Query 039796
Match_columns 66
No_of_seqs 105 out of 168
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06058 DCP1: Dcp1-like decap 99.9 3.3E-27 7.2E-32 153.6 1.0 53 14-66 2-54 (122)
2 KOG2868 Decapping enzyme compl 99.9 8.7E-23 1.9E-27 151.4 4.1 59 8-66 4-62 (335)
3 KOG4693 Uncharacterized conser 93.7 0.038 8.1E-07 42.1 1.7 22 41-62 105-126 (392)
4 cd00837 EVH1 EVH1 (Enabled, Va 92.3 0.21 4.6E-06 31.1 3.4 29 38-66 6-35 (104)
5 cd00835 RanBD Ran-binding doma 92.2 0.16 3.5E-06 32.1 2.8 27 38-65 15-41 (122)
6 smart00160 RanBD Ran-binding d 90.2 0.44 9.5E-06 30.9 3.3 28 38-66 24-51 (130)
7 PF00638 Ran_BP1: RanBP1 domai 90.0 0.38 8.3E-06 30.0 2.9 26 39-65 15-40 (122)
8 PF00568 WH1: WH1 domain; Int 88.1 0.75 1.6E-05 28.7 3.2 29 38-66 13-42 (111)
9 PF09951 DUF2185: Protein of u 87.5 0.91 2E-05 28.2 3.3 37 18-56 50-86 (89)
10 PF01344 Kelch_1: Kelch motif; 86.6 0.91 2E-05 23.3 2.5 20 37-56 24-43 (47)
11 PF13964 Kelch_6: Kelch motif 86.1 0.76 1.7E-05 24.3 2.1 19 38-56 25-43 (50)
12 PF13418 Kelch_4: Galactose ox 83.5 1 2.3E-05 23.5 1.9 18 39-56 27-44 (49)
13 smart00612 Kelch Kelch domain. 82.8 1.3 2.8E-05 22.0 2.0 18 39-56 13-30 (47)
14 PF13415 Kelch_3: Galactose ox 82.5 1.3 2.9E-05 23.4 2.1 17 40-56 18-34 (49)
15 PF07646 Kelch_2: Kelch motif; 75.8 2.5 5.4E-05 22.3 1.8 21 38-58 27-47 (49)
16 cd01205 WASP WASP-type EVH1 do 72.0 5.8 0.00013 25.5 3.1 29 37-66 8-36 (105)
17 COG3055 Uncharacterized protei 68.6 2.9 6.3E-05 32.4 1.4 20 41-60 113-132 (381)
18 KOG3671 Actin regulatory prote 63.5 2.4 5.1E-05 34.3 0.0 61 5-66 10-70 (569)
19 smart00461 WH1 WASP homology r 51.8 28 0.00061 21.6 3.5 24 41-64 11-34 (106)
20 cd02989 Phd_like_TxnDC9 Phosdu 51.3 16 0.00035 22.4 2.3 36 25-60 38-75 (113)
21 PLN02772 guanylate kinase 48.3 14 0.00031 28.6 2.1 21 41-61 51-71 (398)
22 PF14598 PAS_11: PAS domain; P 47.2 60 0.0013 19.9 4.5 35 30-64 54-89 (111)
23 PHA03092 semaphorin-like prote 45.6 20 0.00044 24.0 2.2 29 31-61 32-60 (134)
24 cd02984 TRX_PICOT TRX domain, 40.7 44 0.00095 18.9 2.9 36 25-60 30-68 (97)
25 PF12673 DUF3794: Domain of un 40.4 26 0.00056 19.9 1.9 33 29-64 1-33 (87)
26 cd02957 Phd_like Phosducin (Ph 39.8 28 0.0006 21.0 2.1 36 25-60 40-76 (113)
27 PLN02153 epithiospecifier prot 39.8 21 0.00047 25.4 1.8 17 42-58 218-234 (341)
28 PLN02153 epithiospecifier prot 39.0 22 0.00048 25.3 1.7 17 42-58 277-293 (341)
29 PF06355 Aegerolysin: Aegeroly 38.9 32 0.00069 22.6 2.4 25 41-65 52-76 (131)
30 PRK09593 arb 6-phospho-beta-gl 37.6 17 0.00037 28.2 1.0 30 18-47 107-138 (478)
31 PHA03098 kelch-like protein; P 37.3 40 0.00087 25.4 3.0 17 41-57 406-422 (534)
32 KOG4693 Uncharacterized conser 35.6 17 0.00038 28.0 0.8 22 40-61 267-288 (392)
33 PRK10557 hypothetical protein; 35.6 42 0.00092 23.0 2.7 29 38-66 87-117 (192)
34 PF07893 DUF1668: Protein of u 35.5 27 0.00058 25.7 1.7 16 42-57 200-215 (342)
35 TIGR03548 mutarot_permut cycli 35.0 35 0.00077 24.0 2.2 16 42-57 272-287 (323)
36 TIGR01233 lacG 6-phospho-beta- 34.7 14 0.00031 28.5 0.2 30 18-47 86-117 (467)
37 PF00085 Thioredoxin: Thioredo 32.7 35 0.00075 19.1 1.6 36 25-60 33-71 (103)
38 PF14157 YmzC: YmzC-like prote 32.5 28 0.00061 20.8 1.2 18 36-53 36-53 (63)
39 KOG1747 Protein tyrosine kinas 31.7 45 0.00099 25.6 2.5 25 38-65 231-255 (342)
40 PF11679 DUF3275: Protein of u 30.3 25 0.00054 25.4 0.8 13 44-56 202-214 (214)
41 PRK09589 celA 6-phospho-beta-g 30.2 22 0.00048 27.6 0.6 31 18-48 101-133 (476)
42 KOG0379 Kelch repeat-containin 29.5 32 0.0007 26.5 1.4 22 40-61 189-210 (482)
43 PRK15014 6-phospho-beta-glucos 27.3 30 0.00065 26.9 0.9 31 18-48 103-135 (477)
44 TIGR01295 PedC_BrcD bacterioci 27.3 87 0.0019 19.5 2.9 26 25-51 39-64 (122)
45 TIGR03547 muta_rot_YjhT mutatr 27.0 62 0.0013 22.9 2.4 16 41-56 168-183 (346)
46 PRK14131 N-acetylneuraminic ac 26.6 49 0.0011 24.1 1.9 17 41-57 106-122 (376)
47 KOG4441 Proteins containing BT 26.5 58 0.0013 25.8 2.3 18 38-55 346-363 (571)
48 PLN02814 beta-glucosidase 26.3 28 0.00062 27.3 0.6 31 18-48 110-142 (504)
49 PHA02278 thioredoxin-like prot 26.0 1.1E+02 0.0023 18.7 3.1 41 25-65 30-79 (103)
50 TIGR01068 thioredoxin thioredo 25.4 1.3E+02 0.0028 16.5 3.3 34 27-60 32-68 (101)
51 PF10577 UPF0560: Uncharacteri 24.4 55 0.0012 27.9 2.0 24 35-58 203-226 (807)
52 PF11732 Thoc2: Transcription- 24.4 27 0.00058 21.3 0.1 29 19-47 15-43 (77)
53 cd02985 TRX_CDSP32 TRX family, 24.3 1.1E+02 0.0024 18.0 2.9 26 26-51 32-57 (103)
54 PF03759 PRONE: PRONE (Plant-s 24.2 49 0.0011 25.7 1.5 29 13-41 100-128 (365)
55 PRK11408 hypothetical protein; 23.7 58 0.0013 22.2 1.6 18 42-59 48-65 (145)
56 PRK13511 6-phospho-beta-galact 23.5 37 0.00079 26.2 0.7 30 18-47 87-118 (469)
57 cd03600 CLECT_thrombomodulin_l 23.5 68 0.0015 19.9 1.9 29 38-66 105-138 (141)
58 PLN03215 ascorbic acid mannose 23.3 91 0.002 24.0 2.8 26 39-64 284-311 (373)
59 PF03088 Str_synth: Strictosid 22.7 1.4E+02 0.0029 18.3 3.1 25 30-54 26-50 (89)
60 PLN02998 beta-glucosidase 22.6 36 0.00077 26.7 0.5 30 18-47 115-146 (497)
61 cd02987 Phd_like_Phd Phosducin 22.1 1.1E+02 0.0024 20.3 2.8 25 25-49 99-123 (175)
62 PF10946 DUF2625: Protein of u 21.9 60 0.0013 23.3 1.5 18 42-59 125-142 (208)
63 PRK09852 cryptic 6-phospho-bet 21.7 45 0.00098 26.0 0.9 30 18-47 105-136 (474)
64 PLN02193 nitrile-specifier pro 21.6 74 0.0016 24.2 2.0 18 41-58 193-210 (470)
65 cd02986 DLP Dim1 family, Dim1- 21.6 1E+02 0.0022 19.9 2.5 26 25-50 30-56 (114)
66 cd02947 TRX_family TRX family; 21.5 1.3E+02 0.0028 15.8 2.6 36 25-60 26-63 (93)
67 KOG3304 Surfeit family protein 21.4 94 0.002 21.3 2.3 27 14-40 15-41 (148)
68 cd02952 TRP14_like Human TRX-r 21.4 1.8E+02 0.0039 18.5 3.5 26 25-50 44-70 (119)
69 PHA02713 hypothetical protein; 20.9 69 0.0015 25.1 1.8 16 41-56 432-447 (557)
70 COG4835 Uncharacterized protei 20.6 21 0.00046 23.8 -0.9 17 40-56 9-25 (124)
No 1
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=99.93 E-value=3.3e-27 Score=153.63 Aligned_cols=53 Identities=49% Similarity=0.816 Sum_probs=50.4
Q ss_pred hhhhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 14 QSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
+++++|||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+
T Consensus 2 ~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~ 54 (122)
T PF06058_consen 2 RTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYK 54 (122)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred chHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEE
Confidence 67889999999999999999999999999999999999999999999999995
No 2
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=99.87 E-value=8.7e-23 Score=151.37 Aligned_cols=59 Identities=42% Similarity=0.756 Sum_probs=53.8
Q ss_pred CCCCchhhhhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 8 MPNLDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 8 ~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
++......++++||+||+|+||+|++||++++||+||+||...++|+|+|||||||||+
T Consensus 4 ~~~~~~~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~ 62 (335)
T KOG2868|consen 4 MADELIFRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYK 62 (335)
T ss_pred hhHHHHHhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEE
Confidence 33445566678999999999999999999999999999999999999999999999996
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.74 E-value=0.038 Score=42.14 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.2
Q ss_pred EEEEEeeCCCCCeeecCceeeE
Q 039796 41 VTFYEFNIDLSQWSRKDVEGSL 62 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~vEGtL 62 (66)
-+||.||+++++|.|..|||++
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred ceeeeeccccccccccceeeec
Confidence 4799999999999999999974
No 4
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=92.34 E-value=0.21 Score=31.08 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCcEEEEEeeCCCCCeeec-CceeeEEEeC
Q 039796 38 AAHVTFYEFNIDLSQWSRK-DVEGSLFVVK 66 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~-~vEGtLFv~k 66 (66)
++-|.||.+|+.+++|.+. +..|.+-+++
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~ 35 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVK 35 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEE
Confidence 4668999999999999998 6778877663
No 5
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=92.24 E-value=0.16 Score=32.14 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=23.3
Q ss_pred CCcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
...|-||.|+.++++|...|+ |+|-|.
T Consensus 15 ~~r~KLy~~~~~~~~WkerG~-G~lki~ 41 (122)
T cd00835 15 SVRAKLYRFDDETKEWKERGV-GELKIL 41 (122)
T ss_pred EEEeEEEEEcCCCCCCeeceE-EEEEEE
Confidence 456899999988899999998 888875
No 6
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=90.17 E-value=0.44 Score=30.86 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=24.1
Q ss_pred CCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
...|-||.|+.++++|.-.|+ |.|.|.+
T Consensus 24 ~~r~KL~~~~~~~~~WkerG~-G~lki~~ 51 (130)
T smart00160 24 SARAKLYRFANDKKEWKERGV-GDLKILK 51 (130)
T ss_pred EEEeEEEEEcCCCCCCeeccE-EEEEEEE
Confidence 357899999998999999999 9998853
No 7
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=90.01 E-value=0.38 Score=30.01 Aligned_cols=26 Identities=23% Similarity=0.684 Sum_probs=22.1
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.|+..+++|...|+ |.|-|.
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~-G~l~i~ 40 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGV-GTLKIL 40 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEEEEEEEeCCCCCccccce-eEEEEE
Confidence 35899999998999999988 888764
No 8
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=88.12 E-value=0.75 Score=28.74 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCcEEEEEeeCCCCC-eeecCceeeEEEeC
Q 039796 38 AAHVTFYEFNIDLSQ-WSRKDVEGSLFVVK 66 (66)
Q Consensus 38 as~v~vY~f~~~~~~-WeK~~vEGtLFv~k 66 (66)
++-|-||..|+.+++ |.+....|.+-+++
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~ 42 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVK 42 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEE
Confidence 466889999988888 99988888887763
No 9
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=87.51 E-value=0.91 Score=28.24 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=30.7
Q ss_pred hhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeec
Q 039796 18 LLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~ 56 (66)
-..|+.+-++||.|..||+. +.-+.|..+..++ |.|-
T Consensus 50 i~~ln~i~~idp~i~~ll~~-p~Gt~~er~e~g~-~~~v 86 (89)
T PF09951_consen 50 IVDLNTILNIDPSIIPLLDA-PYGTAFERDEDGE-FYEV 86 (89)
T ss_pred EEeHHHHHhhChHHHHHhcC-CCCceEEECCCCC-EEEe
Confidence 35789999999999999985 7788889987655 9873
No 10
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.58 E-value=0.91 Score=23.31 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=16.9
Q ss_pred hCCcEEEEEeeCCCCCeeec
Q 039796 37 TAAHVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~ 56 (66)
......++.||.++++|++.
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEc
Confidence 45677899999999999974
No 11
>PF13964 Kelch_6: Kelch motif
Probab=86.08 E-value=0.76 Score=24.26 Aligned_cols=19 Identities=5% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCcEEEEEeeCCCCCeeec
Q 039796 38 AAHVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~ 56 (66)
...-.++.||+++++|++.
T Consensus 25 ~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQL 43 (50)
T ss_pred CccccEEEEcCCCCcEEEC
Confidence 3456789999999999985
No 12
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=83.51 E-value=1 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=12.7
Q ss_pred CcEEEEEeeCCCCCeeec
Q 039796 39 AHVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~ 56 (66)
.+--+|.||.++++|++.
T Consensus 27 ~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E---EEEEETTTTEEEE-
T ss_pred ccCCEEEEECCCCEEEEC
Confidence 445689999999999986
No 13
>smart00612 Kelch Kelch domain.
Probab=82.79 E-value=1.3 Score=21.96 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=15.2
Q ss_pred CcEEEEEeeCCCCCeeec
Q 039796 39 AHVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~ 56 (66)
....++.||+.+++|++.
T Consensus 13 ~~~~v~~yd~~~~~W~~~ 30 (47)
T smart00612 13 RLKSVEVYDPETNKWTPL 30 (47)
T ss_pred eeeeEEEECCCCCeEccC
Confidence 456789999999999864
No 14
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=82.51 E-value=1.3 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.6
Q ss_pred cEEEEEeeCCCCCeeec
Q 039796 40 HVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~ 56 (66)
.--+|.||.++++|++.
T Consensus 18 ~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRI 34 (49)
T ss_pred ecCEEEEECCCCEEEEC
Confidence 35689999999999987
No 15
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.83 E-value=2.5 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=16.6
Q ss_pred CCcEEEEEeeCCCCCeeecCc
Q 039796 38 AAHVTFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~v 58 (66)
..+-.++.||.++++|++...
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred cccceeEEEECCCCEEeecCC
Confidence 445568899999999998654
No 16
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=71.96 E-value=5.8 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=23.8
Q ss_pred hCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
.++-|-||.=.++.++|.++ .+|.+-+++
T Consensus 8 ~~aVvqlY~a~p~~~~W~~~-~~Gvl~~vk 36 (105)
T cd01205 8 ATAVVQLYKAYPDPGRWTKT-LTGAVCLVK 36 (105)
T ss_pred EEEEEEEEEecCCCCeeEEE-eEEEEEEEE
Confidence 34567899998778999999 999987764
No 17
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.63 E-value=2.9 Score=32.44 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.1
Q ss_pred EEEEEeeCCCCCeeecCcee
Q 039796 41 VTFYEFNIDLSQWSRKDVEG 60 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~vEG 60 (66)
-.+|.||+.+++|+|.+..-
T Consensus 113 nd~Y~y~p~~nsW~kl~t~s 132 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRS 132 (381)
T ss_pred eeeEEecCCCChhheecccc
Confidence 46899999999999998653
No 18
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=63.47 E-value=2.4 Score=34.31 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCCCCCCchhhhhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 5 GKLMPNLDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 5 ~~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
.+..||+.....+.-.=..|+++-+. +...-.++-|-||.=+...+.|.|++.-|.|.++|
T Consensus 10 ~~~~~n~~S~lLt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVk 70 (569)
T KOG3671|consen 10 PRRPPNVPSTLLTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVK 70 (569)
T ss_pred CCCCCCCcccccchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCChhhhccccCceeEEEee
Confidence 44455543332222223345666666 33333455678999998889999999999998775
No 19
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=51.78 E-value=28 Score=21.58 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=16.5
Q ss_pred EEEEEeeCCCCCeeecCceeeEEE
Q 039796 41 VTFYEFNIDLSQWSRKDVEGSLFV 64 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~vEGtLFv 64 (66)
+++-.|+..++.|.+.+..|.+-+
T Consensus 11 avV~~y~~~~~~W~~~~~gg~~~~ 34 (106)
T smart00461 11 AVVQLYDADTKKWVPTGEGGAANL 34 (106)
T ss_pred EEEEEEeCCCCCeEECCCCCEEEE
Confidence 445555666778999998874443
No 20
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=51.30 E-value=16 Score=22.41 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=27.1
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
++.+|.++++....+.+.+|+-|.+.+. +++-+|.+
T Consensus 38 ~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~ 75 (113)
T cd02989 38 KIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV 75 (113)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc
Confidence 5667788888877777899999977664 66666665
No 21
>PLN02772 guanylate kinase
Probab=48.30 E-value=14 Score=28.61 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEEEEeeCCCCCeeecCceee
Q 039796 41 VTFYEFNIDLSQWSRKDVEGS 61 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~vEGt 61 (66)
-.||-||..++.|.+.-|.|+
T Consensus 51 ~~v~i~D~~t~~W~~P~V~G~ 71 (398)
T PLN02772 51 IGVQILDKITNNWVSPIVLGT 71 (398)
T ss_pred ceEEEEECCCCcEecccccCC
Confidence 479999999999999999885
No 22
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=47.20 E-value=60 Score=19.92 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=26.1
Q ss_pred cHHHHhhhCCcEE-EEEeeCCCCCeeecCceeeEEE
Q 039796 30 FIEEILITAAHVT-FYEFNIDLSQWSRKDVEGSLFV 64 (66)
Q Consensus 30 ~I~~Il~~as~v~-vY~f~~~~~~WeK~~vEGtLFv 64 (66)
...+++....-++ .|+|-..+++|.....++.+|.
T Consensus 54 ~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~ 89 (111)
T PF14598_consen 54 HHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFY 89 (111)
T ss_dssp HHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEE
T ss_pred HHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEE
Confidence 3455555555444 8999999999999999998885
No 23
>PHA03092 semaphorin-like protein; Provisional
Probab=45.57 E-value=20 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.453 Sum_probs=24.2
Q ss_pred HHHHhhhCCcEEEEEeeCCCCCeeecCceee
Q 039796 31 IEEILITAAHVTFYEFNIDLSQWSRKDVEGS 61 (66)
Q Consensus 31 I~~Il~~as~v~vY~f~~~~~~WeK~~vEGt 61 (66)
|.++|.+...-+||+|+ .++-.|+|.-.+
T Consensus 32 iddvlytgvngavytfs--nn~lnktglan~ 60 (134)
T PHA03092 32 IDDVLYTGVNGAVYTFS--NNKLNKTGLANT 60 (134)
T ss_pred hhhhhccccCceEEEec--CCcccccccccc
Confidence 67889999999999998 788888876544
No 24
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=40.74 E-value=44 Score=18.85 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=22.7
Q ss_pred HhhCccHHHHhhh-CCcEEEEEeeCCCCC--eeecCcee
Q 039796 25 QLIDPFIEEILIT-AAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~-as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
++.+|.++++... ...+.+|..|.+... +.+-++.|
T Consensus 30 ~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~ 68 (97)
T cd02984 30 KQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA 68 (97)
T ss_pred HHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc
Confidence 4556666666666 667888888855322 34455665
No 25
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=40.41 E-value=26 Score=19.87 Aligned_cols=33 Identities=39% Similarity=0.417 Sum_probs=24.5
Q ss_pred ccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEE
Q 039796 29 PFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64 (66)
Q Consensus 29 p~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv 64 (66)
|.|.+|+..-..+.+-......+ |--++|.+.+
T Consensus 1 P~I~~Il~~~~~v~i~~~~v~~~---kv~v~G~l~~ 33 (87)
T PF12673_consen 1 PDIEKILSSDAEVKITEIKVIDD---KVIVEGELNV 33 (87)
T ss_pred CChHhEEEeeeEEEEEEEEEECC---EEEEEEEEEE
Confidence 67888888888888777765554 6778887764
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=39.76 E-value=28 Score=20.96 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=23.8
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCC-CeeecCcee
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLS-QWSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~-~WeK~~vEG 60 (66)
+.++|.++++....+.+.+++.|.+.+ -.++-+|.+
T Consensus 40 ~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~ 76 (113)
T cd02957 40 KILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKV 76 (113)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCc
Confidence 456777888888877888888886542 133445544
No 27
>PLN02153 epithiospecifier protein
Probab=39.75 E-value=21 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.5
Q ss_pred EEEEeeCCCCCeeecCc
Q 039796 42 TFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~v 58 (66)
.||.||+++++|++...
T Consensus 218 ~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 218 AVQFFDPASGKWTEVET 234 (341)
T ss_pred ceEEEEcCCCcEEeccc
Confidence 58999999999998653
No 28
>PLN02153 epithiospecifier protein
Probab=39.00 E-value=22 Score=25.31 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.6
Q ss_pred EEEEeeCCCCCeeecCc
Q 039796 42 TFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~v 58 (66)
.||.||.++++|++...
T Consensus 277 ~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 277 EGYALDTETLVWEKLGE 293 (341)
T ss_pred cEEEEEcCccEEEeccC
Confidence 68999999999998753
No 29
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=38.92 E-value=32 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.005 Sum_probs=22.0
Q ss_pred EEEEEeeCCCCCeeecCceeeEEEe
Q 039796 41 VTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
-.-|.+..+..+|.-.|.||+|=+|
T Consensus 52 ~~~~~i~scGr~~~~sGTEGsfdl~ 76 (131)
T PF06355_consen 52 GGSYSICSCGREGSPSGTEGSFDLY 76 (131)
T ss_pred CCeEEEEEecCCCCCcCceEEEEEE
Confidence 5667888899999999999999876
No 30
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=37.64 E-value=17 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=27.5
Q ss_pred hhcHHHHHhhCccHHHHhhhC--CcEEEEEee
Q 039796 18 LLNLTVLQLIDPFIEEILITA--AHVTFYEFN 47 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~vY~f~ 47 (66)
..|-..|+.|+.-|.+++..- +.|+||+||
T Consensus 107 ~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~d 138 (478)
T PRK09593 107 EPNEAGLQFYEDIFKECHKYGIEPLVTITHFD 138 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 489999999999999999865 899999999
No 31
>PHA03098 kelch-like protein; Provisional
Probab=37.26 E-value=40 Score=25.42 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.3
Q ss_pred EEEEEeeCCCCCeeecC
Q 039796 41 VTFYEFNIDLSQWSRKD 57 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~ 57 (66)
-.++.||+.+++|++..
T Consensus 406 ~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 406 KTVECFSLNTNKWSKGS 422 (534)
T ss_pred ceEEEEeCCCCeeeecC
Confidence 56899999999999753
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=35.57 E-value=17 Score=27.96 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.3
Q ss_pred cEEEEEeeCCCCCeeecCceee
Q 039796 40 HVTFYEFNIDLSQWSRKDVEGS 61 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~~vEGt 61 (66)
|--||.||+.+.-|.+-.+.|.
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hcceeecccccchheeeeccCC
Confidence 3458999999999999887773
No 33
>PRK10557 hypothetical protein; Provisional
Probab=35.57 E-value=42 Score=23.00 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=19.5
Q ss_pred CCcEEEEEeeCCCC-Ceee-cCceeeEEEeC
Q 039796 38 AAHVTFYEFNIDLS-QWSR-KDVEGSLFVVK 66 (66)
Q Consensus 38 as~v~vY~f~~~~~-~WeK-~~vEGtLFv~k 66 (66)
...|.+|.||...+ .|++ .+.|--.|.||
T Consensus 87 ~~sCi~~~YD~n~nG~~~~~~~~~~e~~gyr 117 (192)
T PRK10557 87 QGSCLIVAWDLNSNGRWEGAPHKESEQFGYR 117 (192)
T ss_pred CCCeEEEEEcCCCCCcccCCCCCccceEEEE
Confidence 67789999985544 4987 44454566664
No 34
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=35.45 E-value=27 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.684 Sum_probs=14.4
Q ss_pred EEEEeeCCCCCeeecC
Q 039796 42 TFYEFNIDLSQWSRKD 57 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~ 57 (66)
.-|.||..+.+|.|.|
T Consensus 200 GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHG 215 (342)
T ss_pred EEEEEEcCCcceeecc
Confidence 6799999999999974
No 35
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=35.01 E-value=35 Score=24.01 Aligned_cols=16 Identities=13% Similarity=0.476 Sum_probs=13.8
Q ss_pred EEEEeeCCCCCeeecC
Q 039796 42 TFYEFNIDLSQWSRKD 57 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~ 57 (66)
.++.||+++++|++.+
T Consensus 272 ~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 272 KILIYNVRTGKWKSIG 287 (323)
T ss_pred eEEEEECCCCeeeEcc
Confidence 5999999999999754
No 36
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.67 E-value=14 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=27.6
Q ss_pred hhcHHHHHhhCccHHHHhhh--CCcEEEEEee
Q 039796 18 LLNLTVLQLIDPFIEEILIT--AAHVTFYEFN 47 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~ 47 (66)
+.|-..|+.|+.-|.+++.. -+.|+||+||
T Consensus 86 ~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 117 (467)
T TIGR01233 86 EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFD 117 (467)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCC
Confidence 58999999999999999985 5899999999
No 37
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=32.74 E-value=35 Score=19.12 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=23.7
Q ss_pred HhhCccHHHHhhhCC-cEEEEEeeCCCCC--eeecCcee
Q 039796 25 QLIDPFIEEILITAA-HVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as-~v~vY~f~~~~~~--WeK~~vEG 60 (66)
++..|.+.++....+ -+.++..|.+.+. +++-+|.|
T Consensus 33 ~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 71 (103)
T PF00085_consen 33 KAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS 71 (103)
T ss_dssp HHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS
T ss_pred ccccceecccccccccccccchhhhhccchhhhccCCCC
Confidence 345566667766666 7888888866553 55556665
No 38
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=32.53 E-value=28 Score=20.77 Aligned_cols=18 Identities=6% Similarity=0.313 Sum_probs=13.4
Q ss_pred hhCCcEEEEEeeCCCCCe
Q 039796 36 ITAAHVTFYEFNIDLSQW 53 (66)
Q Consensus 36 ~~as~v~vY~f~~~~~~W 53 (66)
+-...+-+|+||+++|+=
T Consensus 36 ~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 36 DEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp -ETTEEEEEEEETTTTEE
T ss_pred ecCCeEEEEEeCCCCCeE
Confidence 455667789999998863
No 39
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=31.70 E-value=45 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
.+.=++|.|+ ..|++-..|-++|||
T Consensus 231 ~prY~ff~~~---ht~eGD~~es~~FIY 255 (342)
T KOG1747|consen 231 GPRYHFFLFK---HTHEGDPLESIVFIY 255 (342)
T ss_pred CCceEEEecc---cccCCCCceeEEEEE
Confidence 4455788887 679999999999998
No 40
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.27 E-value=25 Score=25.41 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=11.9
Q ss_pred EEeeCCCCCeeec
Q 039796 44 YEFNIDLSQWSRK 56 (66)
Q Consensus 44 Y~f~~~~~~WeK~ 56 (66)
|.||..+|.|.++
T Consensus 202 Y~~d~~~Q~W~~~ 214 (214)
T PF11679_consen 202 YAFDFKSQTWHRK 214 (214)
T ss_pred eeecccccccccC
Confidence 9999999999874
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=30.23 E-value=22 Score=27.57 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=27.8
Q ss_pred hhcHHHHHhhCccHHHHhhhC--CcEEEEEeeC
Q 039796 18 LLNLTVLQLIDPFIEEILITA--AHVTFYEFNI 48 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~vY~f~~ 48 (66)
..|-..|+.|+.-|.+++..- +.|+||+||.
T Consensus 101 ~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dl 133 (476)
T PRK09589 101 EPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEM 133 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 479999999999999999865 8999999993
No 42
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=29.47 E-value=32 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.0
Q ss_pred cEEEEEeeCCCCCeeecCceee
Q 039796 40 HVTFYEFNIDLSQWSRKDVEGS 61 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~~vEGt 61 (66)
.=-+|.||.++++|.+..+.|.
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred eeeeeeeccccccceecccCCC
Confidence 3457888888999999999884
No 43
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=27.30 E-value=30 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=27.9
Q ss_pred hhcHHHHHhhCccHHHHhhhC--CcEEEEEeeC
Q 039796 18 LLNLTVLQLIDPFIEEILITA--AHVTFYEFNI 48 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~vY~f~~ 48 (66)
..|-..|+.||.-|..++..- +.|+||+||.
T Consensus 103 ~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 103 QPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 479999999999999999865 8999999994
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=27.29 E-value=87 Score=19.55 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=20.5
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCC
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLS 51 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~ 51 (66)
|+..|.++++... ..+.+|.+|.+.+
T Consensus 39 ~~~~P~l~~~~~~-~~~~~y~vdvd~~ 64 (122)
T TIGR01295 39 RKFSGTLSGVVAQ-TKAPIYYIDSENN 64 (122)
T ss_pred HHHhHHHHHHHHh-cCCcEEEEECCCc
Confidence 6678888888887 5678999997754
No 45
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=26.97 E-value=62 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=14.0
Q ss_pred EEEEEeeCCCCCeeec
Q 039796 41 VTFYEFNIDLSQWSRK 56 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~ 56 (66)
-.++.||+.+++|++.
T Consensus 168 ~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNL 183 (346)
T ss_pred ceEEEEECCCCceeEC
Confidence 4689999999999975
No 46
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=26.62 E-value=49 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.606 Sum_probs=14.6
Q ss_pred EEEEEeeCCCCCeeecC
Q 039796 41 VTFYEFNIDLSQWSRKD 57 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~ 57 (66)
..+|.||+.+++|++..
T Consensus 106 ~~v~~YD~~~n~W~~~~ 122 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLD 122 (376)
T ss_pred ccEEEEeCCCCEEEeCC
Confidence 46999999999999854
No 47
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=26.48 E-value=58 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=15.0
Q ss_pred CCcEEEEEeeCCCCCeee
Q 039796 38 AAHVTFYEFNIDLSQWSR 55 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK 55 (66)
..--+++.||+.+++|.+
T Consensus 346 ~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTP 363 (571)
T ss_pred cccceEEEecCCCCceec
Confidence 344689999999999997
No 48
>PLN02814 beta-glucosidase
Probab=26.34 E-value=28 Score=27.32 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=28.0
Q ss_pred hhcHHHHHhhCccHHHHhhh--CCcEEEEEeeC
Q 039796 18 LLNLTVLQLIDPFIEEILIT--AAHVTFYEFNI 48 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~~ 48 (66)
+.|-..|+.|+.-|.+++.. -+.|+||+||.
T Consensus 110 ~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 110 LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 68999999999999999975 68999999983
No 49
>PHA02278 thioredoxin-like protein
Probab=26.01 E-value=1.1e+02 Score=18.72 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=24.9
Q ss_pred HhhCccHHHHhhh-CCcEEEEEeeCCCCC------eeecCcee--eEEEe
Q 039796 25 QLIDPFIEEILIT-AAHVTFYEFNIDLSQ------WSRKDVEG--SLFVV 65 (66)
Q Consensus 25 ~R~Dp~I~~Il~~-as~v~vY~f~~~~~~------WeK~~vEG--tLFv~ 65 (66)
|...|.++++... ...+.++..|.+.+. +++-+|.| ||.+|
T Consensus 30 k~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 30 EILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred HhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4556777777554 223568888876543 45667776 55554
No 50
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=25.43 E-value=1.3e+02 Score=16.54 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=18.5
Q ss_pred hCccHHHHhhhC-CcEEEEEeeCCCCC--eeecCcee
Q 039796 27 IDPFIEEILITA-AHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 27 ~Dp~I~~Il~~a-s~v~vY~f~~~~~~--WeK~~vEG 60 (66)
..|.+.++.... ..+.++..|.+.+. |.+-+|.+
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 68 (101)
T TIGR01068 32 IAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS 68 (101)
T ss_pred hCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc
Confidence 344445554332 35778888755442 55556665
No 51
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.44 E-value=55 Score=27.85 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=21.5
Q ss_pred hhhCCcEEEEEeeCCCCCeeecCc
Q 039796 35 LITAAHVTFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 35 l~~as~v~vY~f~~~~~~WeK~~v 58 (66)
+....++-.+.||+.++.|.|.++
T Consensus 203 l~~gd~IPAW~FD~ktG~Wv~~G~ 226 (807)
T PF10577_consen 203 LRHGDSIPAWRFDEKTGAWVKSGL 226 (807)
T ss_pred CCCCCeeeeeEecCCcceeEecce
Confidence 567889999999999999999876
No 52
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=24.37 E-value=27 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred hcHHHHHhhCccHHHHhhhCCcEEEEEee
Q 039796 19 LNLTVLQLIDPFIEEILITAAHVTFYEFN 47 (66)
Q Consensus 19 lNL~vL~R~Dp~I~~Il~~as~v~vY~f~ 47 (66)
.=|+.++.||.-|+-+++.+.|.+-+.||
T Consensus 15 ~il~Qie~YdNli~~vVe~~ky~t~l~~D 43 (77)
T PF11732_consen 15 VILSQIESYDNLIEPVVESLKYFTDLGYD 43 (77)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhcchhhHH
Confidence 34678899999999999999999988887
No 53
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=24.25 E-value=1.1e+02 Score=17.95 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=16.5
Q ss_pred hhCccHHHHhhhCCcEEEEEeeCCCC
Q 039796 26 LIDPFIEEILITAAHVTFYEFNIDLS 51 (66)
Q Consensus 26 R~Dp~I~~Il~~as~v~vY~f~~~~~ 51 (66)
+..|.+.++......+.++..|.+.+
T Consensus 32 ~~~p~l~~la~~~~~v~~~~vd~d~~ 57 (103)
T cd02985 32 KIYPTMVKLSRTCNDVVFLLVNGDEN 57 (103)
T ss_pred HHhHHHHHHHHHCCCCEEEEEECCCC
Confidence 34566666666656677888876543
No 54
>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli. Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.
Probab=24.20 E-value=49 Score=25.70 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.0
Q ss_pred hhhhhhhcHHHHHhhCccHHHHhhhCCcE
Q 039796 13 QQSTKLLNLTVLQLIDPFIEEILITAAHV 41 (66)
Q Consensus 13 ~~~~~~lNL~vL~R~Dp~I~~Il~~as~v 41 (66)
+|+.--+||.+||++|.-.-+||+.....
T Consensus 100 ~RsDl~~NlPALrKLD~MLie~LDsf~dt 128 (365)
T PF03759_consen 100 PRSDLYMNLPALRKLDAMLIEILDSFKDT 128 (365)
T ss_dssp E-HHHHTHHHHHHHHHHHHHHHHHTTCS-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHhCCCC
Confidence 45666789999999999999999988763
No 55
>PRK11408 hypothetical protein; Provisional
Probab=23.69 E-value=58 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.6
Q ss_pred EEEEeeCCCCCeeecCce
Q 039796 42 TFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~vE 59 (66)
.||-|-|++-+||-.++.
T Consensus 48 ~v~Y~aPDtL~WE~l~~g 65 (145)
T PRK11408 48 EVYYFAPDTLKWESLELG 65 (145)
T ss_pred eEEEeCCCccceeccCCc
Confidence 479999999999998764
No 56
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.54 E-value=37 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=27.2
Q ss_pred hhcHHHHHhhCccHHHHhhh--CCcEEEEEee
Q 039796 18 LLNLTVLQLIDPFIEEILIT--AAHVTFYEFN 47 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~ 47 (66)
..|-..|+.|+.-|.+++.. -+.|+||+||
T Consensus 87 ~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 118 (469)
T PRK13511 87 EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFD 118 (469)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 58999999999999999864 5799999999
No 57
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=23.48 E-value=68 Score=19.87 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=21.0
Q ss_pred CCcEEEEEeeCC---CCCeeecCceeeE--EEeC
Q 039796 38 AAHVTFYEFNID---LSQWSRKDVEGSL--FVVK 66 (66)
Q Consensus 38 as~v~vY~f~~~---~~~WeK~~vEGtL--Fv~k 66 (66)
..+|+.+..+.. ...|...+.+..+ |||+
T Consensus 105 ~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~fIC~ 138 (141)
T cd03600 105 SPRCVALSAAGSTPDNLKWKDGPCSARADGYLCK 138 (141)
T ss_pred CCccEEEEccCCCCCCCccccCCcCCCCCCeEEe
Confidence 356777766532 4689999999874 9986
No 58
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.32 E-value=91 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=19.7
Q ss_pred CcEEEEEeeCCCCCeeecCcee--eEEE
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEG--SLFV 64 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEG--tLFv 64 (66)
.-.-||+.|.+.++|++.+-=| .||+
T Consensus 284 ~~f~VfklD~~~~~WveV~sLgd~aLFl 311 (373)
T PLN03215 284 VGFKVYKFDDELAKWMEVKTLGDNAFVM 311 (373)
T ss_pred eEEEEEEEcCCCCcEEEecccCCeEEEE
Confidence 4568999999999999865333 6665
No 59
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.66 E-value=1.4e+02 Score=18.32 Aligned_cols=25 Identities=4% Similarity=0.158 Sum_probs=19.7
Q ss_pred cHHHHhhhCCcEEEEEeeCCCCCee
Q 039796 30 FIEEILITAAHVTFYEFNIDLSQWS 54 (66)
Q Consensus 30 ~I~~Il~~as~v~vY~f~~~~~~We 54 (66)
....++..-+.-.|.+||+.+++.+
T Consensus 26 ~~~~~le~~~~GRll~ydp~t~~~~ 50 (89)
T PF03088_consen 26 WVYDLLEGRPTGRLLRYDPSTKETT 50 (89)
T ss_dssp HHHHHHHT---EEEEEEETTTTEEE
T ss_pred eeeeeecCCCCcCEEEEECCCCeEE
Confidence 5788999999999999999999875
No 60
>PLN02998 beta-glucosidase
Probab=22.63 E-value=36 Score=26.73 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=27.4
Q ss_pred hhcHHHHHhhCccHHHHhhh--CCcEEEEEee
Q 039796 18 LLNLTVLQLIDPFIEEILIT--AAHVTFYEFN 47 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~ 47 (66)
+.|-..|+.|+--|.+++.. -+.|+||+||
T Consensus 115 ~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~d 146 (497)
T PLN02998 115 PINPKGLQYYNNLIDELITHGIQPHVTLHHFD 146 (497)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 58999999999999999875 6799999998
No 61
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.10 E-value=1.1e+02 Score=20.35 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=19.8
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCC
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNID 49 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~ 49 (66)
+.++|.+.+|...-+.+.+++-|.+
T Consensus 99 k~m~~~l~~LA~~~~~vkF~kVd~d 123 (175)
T cd02987 99 AALNSSLLCLAAEYPAVKFCKIRAS 123 (175)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecc
Confidence 5667788888888888888888865
No 62
>PF10946 DUF2625: Protein of unknown function DUF2625; InterPro: IPR021239 Some members in this family of proteins are annotated as ybfG however currently no function is known.
Probab=21.89 E-value=60 Score=23.31 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.7
Q ss_pred EEEEeeCCCCCeeecCce
Q 039796 42 TFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 42 ~vY~f~~~~~~WeK~~vE 59 (66)
-||-|.|++-+||-.++.
T Consensus 125 ~v~YfAPDtL~WE~l~~~ 142 (208)
T PF10946_consen 125 KVYYFAPDTLEWEPLEIG 142 (208)
T ss_pred eEEEECCCcccccccCCC
Confidence 589999999999988764
No 63
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=21.67 E-value=45 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.8
Q ss_pred hhcHHHHHhhCccHHHHhhhC--CcEEEEEee
Q 039796 18 LLNLTVLQLIDPFIEEILITA--AHVTFYEFN 47 (66)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~vY~f~ 47 (66)
..|-..|+.||.-|..++..- +.|+||+||
T Consensus 105 ~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~ 136 (474)
T PRK09852 105 TPNQQGIAFYRSVFEECKKYGIEPLVTLCHFD 136 (474)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCC
Confidence 479999999999999999766 677999998
No 64
>PLN02193 nitrile-specifier protein
Probab=21.62 E-value=74 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=14.9
Q ss_pred EEEEEeeCCCCCeeecCc
Q 039796 41 VTFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~v 58 (66)
..+|.||.++++|++...
T Consensus 193 ~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 193 KHLYVFDLETRTWSISPA 210 (470)
T ss_pred CcEEEEECCCCEEEeCCC
Confidence 359999999999997644
No 65
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=21.57 E-value=1e+02 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=21.8
Q ss_pred HhhCccHHHHhhhCCc-EEEEEeeCCC
Q 039796 25 QLIDPFIEEILITAAH-VTFYEFNIDL 50 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~-v~vY~f~~~~ 50 (66)
+.+||-++++-..-+. |.+|+-|.+.
T Consensus 30 k~mdp~l~ela~~~~~~~~f~kVDVDe 56 (114)
T cd02986 30 LQLDDILSKTSHDLSKMASIYLVDVDK 56 (114)
T ss_pred HHHHHHHHHHHHHccCceEEEEEeccc
Confidence 6789999999888776 9999999764
No 66
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=21.54 E-value=1.3e+02 Score=15.76 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=19.3
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCC--CCCeeecCcee
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNID--LSQWSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~--~~~WeK~~vEG 60 (66)
++..|.++++......+.+|..|.. ..-..+-++.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 63 (93)
T cd02947 26 KAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS 63 (93)
T ss_pred HHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc
Confidence 3444556666555566677766643 22344445554
No 67
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=21.40 E-value=94 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=19.7
Q ss_pred hhhhhhcHHHHHhhCccHHHHhhhCCc
Q 039796 14 QSTKLLNLTVLQLIDPFIEEILITAAH 40 (66)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~ 40 (66)
.+...+==+-+||.+-.|++|++...+
T Consensus 15 ask~al~k~~~~Rl~ddIkS~~dNF~~ 41 (148)
T KOG3304|consen 15 ASKEALLKSYNKRLKDDIKSIMDNFTE 41 (148)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 444555556779999999999887543
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=21.36 E-value=1.8e+02 Score=18.49 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.8
Q ss_pred HhhCccHHHHhhhCC-cEEEEEeeCCC
Q 039796 25 QLIDPFIEEILITAA-HVTFYEFNIDL 50 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as-~v~vY~f~~~~ 50 (66)
|...|.++++....+ .+.+|+-|.+.
T Consensus 44 r~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 44 VKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred HhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 677899999999988 68899999654
No 69
>PHA02713 hypothetical protein; Provisional
Probab=20.91 E-value=69 Score=25.07 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=13.7
Q ss_pred EEEEEeeCCCCCeeec
Q 039796 41 VTFYEFNIDLSQWSRK 56 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~ 56 (66)
-.++.||+++++|++.
T Consensus 432 ~~ve~YDP~td~W~~v 447 (557)
T PHA02713 432 NKVIRYDTVNNIWETL 447 (557)
T ss_pred ceEEEECCCCCeEeec
Confidence 4689999999999854
No 70
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=21 Score=23.77 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=14.1
Q ss_pred cEEEEEeeCCCCCeeec
Q 039796 40 HVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~ 56 (66)
+|.=|+||.+.-+|+|-
T Consensus 9 fV~qyhfdarn~Ewe~E 25 (124)
T COG4835 9 FVNQYHFDARNEEWEKE 25 (124)
T ss_pred HHHHhcccchhhHHHhc
Confidence 45569999999999974
Done!