Query 039796
Match_columns 66
No_of_seqs 105 out of 168
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyd_A Decapping protein 1; DC 99.9 4.5E-27 1.5E-31 154.5 2.2 56 11-66 8-63 (134)
2 2qkl_A DCP1 protein, SPBC3B9.2 99.9 1.1E-26 3.9E-31 151.6 -0.2 53 14-66 6-58 (127)
3 1q67_A Decapping protein invol 99.8 3.1E-22 1.1E-26 141.5 0.8 51 16-66 19-69 (231)
4 1rrp_B Nuclear pore complex pr 91.3 0.16 5.6E-06 32.1 3.0 26 39-65 27-52 (134)
5 1xke_A RAN-binding protein 2; 90.7 0.19 6.4E-06 31.7 2.9 26 39-65 13-38 (130)
6 3n7c_A ABR034WP; nuclear pore 90.4 0.19 6.3E-06 32.0 2.7 26 39-65 16-41 (130)
7 2crf_A RAN binding protein 3; 88.9 0.31 1E-05 31.6 2.9 26 39-65 32-57 (150)
8 2y8g_A Ranbp3-B, RAN-binding p 88.8 0.32 1.1E-05 31.0 2.9 26 39-65 20-45 (138)
9 4hat_B RAN-specific GTPase-act 86.3 0.55 1.9E-05 30.2 2.9 27 38-65 27-53 (140)
10 1qc6_A EVH1 domain from ENA/VA 82.0 0.92 3.1E-05 28.4 2.5 21 39-60 9-29 (130)
11 1k5d_B RAN-specific GTPase-act 80.3 1.2 4.2E-05 30.3 2.8 26 39-65 51-78 (201)
12 3m1i_B RAN-specific GTPase-act 79.7 1.4 4.7E-05 30.0 2.9 27 38-65 78-104 (191)
13 1evh_A WH1 domain, protein (ME 79.0 1.2 4E-05 27.5 2.2 22 38-59 8-29 (112)
14 1egx_A VAsp, vasodilator-stimu 77.4 1 3.5E-05 27.9 1.5 28 38-65 8-39 (115)
15 1ddw_A GLGF-domain protein hom 69.2 6.1 0.00021 24.6 3.7 21 38-58 8-29 (120)
16 1xod_A Spred1; sprouty, EVH1, 65.6 6.7 0.00023 24.3 3.3 23 38-60 8-30 (118)
17 2jp2_A Spred-2, sprouty-relate 60.3 9.3 0.00032 24.0 3.3 23 38-60 17-39 (126)
18 2dbc_A PDCL2, unnamed protein 58.7 14 0.00048 21.7 3.8 40 25-65 46-87 (135)
19 2ec1_A Nucleoporin 50 kDa; ran 57.7 9 0.00031 23.7 2.9 24 39-65 18-41 (125)
20 3evi_A Phosducin-like protein 45.2 11 0.00039 22.3 1.9 40 25-65 39-80 (118)
21 1i2h_A PSD-ZIP45(homer-1C/VESL 45.0 21 0.00071 23.7 3.2 21 38-58 13-34 (168)
22 2djj_A PDI, protein disulfide- 44.3 20 0.0007 19.7 2.8 39 26-65 42-88 (121)
23 2woz_A Kelch repeat and BTB do 37.4 17 0.00058 23.6 1.9 17 40-56 277-293 (318)
24 4euy_A Uncharacterized protein 37.0 41 0.0014 18.2 3.3 36 25-60 34-71 (105)
25 3zzx_A Thioredoxin; oxidoreduc 35.3 29 0.00098 19.7 2.5 41 25-65 36-80 (105)
26 4asc_A Kelch repeat and BTB do 35.1 22 0.00074 23.1 2.1 17 40-56 267-283 (315)
27 2vpj_A Kelch-like protein 12; 32.4 26 0.00089 22.3 2.1 16 41-56 269-284 (301)
28 3syx_A Sprouty-related, EVH1 d 32.0 48 0.0016 21.1 3.3 21 38-58 15-35 (130)
29 2uvk_A YJHT; unknown function, 31.6 24 0.00082 23.2 1.9 17 41-57 86-102 (357)
30 1mke_A WIP - N-WAsp, fusion pr 31.4 37 0.0013 22.0 2.8 28 37-66 44-71 (152)
31 2ifs_A N-WAsp, wiskott-aldrich 30.2 40 0.0014 22.2 2.8 28 37-66 61-88 (169)
32 1zgk_A Kelch-like ECH-associat 29.6 30 0.001 22.4 2.1 17 40-56 230-246 (308)
33 2xn4_A Kelch-like protein 2; s 29.0 31 0.0011 22.0 2.1 17 41-57 267-283 (302)
34 3ii7_A Kelch-like protein 7; p 27.5 35 0.0012 21.8 2.1 16 41-56 216-231 (306)
35 1nvp_D Transcription initiatio 27.1 47 0.0016 20.5 2.6 36 17-54 29-72 (108)
36 4dde_A 6-phospho-beta-glucosid 26.7 21 0.00071 26.7 1.0 32 17-48 103-136 (480)
37 4glq_A Methyl-accepting chemot 26.0 61 0.0021 19.9 3.0 32 17-49 8-40 (171)
38 4a3y_A Raucaffricine-O-beta-D- 26.0 29 0.001 26.1 1.7 32 17-48 110-143 (540)
39 1r26_A Thioredoxin; redox-acti 25.9 34 0.0012 19.7 1.7 35 26-60 54-90 (125)
40 3r84_A Mediator of RNA polymer 25.9 11 0.00037 22.7 -0.5 22 20-41 6-27 (86)
41 1f75_A Undecaprenyl pyrophosph 25.8 25 0.00086 24.3 1.2 20 37-58 64-83 (249)
42 2f51_A Thioredoxin; electron t 25.2 37 0.0013 19.1 1.7 34 27-60 41-76 (118)
43 2wz9_A Glutaredoxin-3; protein 24.9 36 0.0012 20.1 1.7 35 26-60 49-85 (153)
44 3kvp_A Uncharacterized protein 24.7 46 0.0016 19.5 2.0 16 38-53 37-52 (72)
45 2vm1_A Thioredoxin, thioredoxi 24.3 39 0.0013 18.2 1.7 34 27-60 46-81 (118)
46 3ta9_A Glycoside hydrolase fam 23.7 20 0.0007 26.6 0.5 31 17-47 98-130 (458)
47 2d2r_A Undecaprenyl pyrophosph 23.5 25 0.00087 24.3 0.9 20 38-59 60-79 (245)
48 4ha4_A Beta-galactosidase; TIM 23.4 17 0.00058 27.0 -0.0 32 17-48 121-154 (489)
49 3qas_B Undecaprenyl pyrophosph 23.0 28 0.00096 24.2 1.0 20 38-59 62-81 (253)
50 2vim_A Thioredoxin, TRX; thior 22.5 47 0.0016 17.4 1.7 23 28-50 38-60 (104)
51 3vii_A Beta-glucosidase; cellu 22.2 32 0.0011 25.8 1.3 32 17-48 99-132 (487)
52 3gnj_A Thioredoxin domain prot 22.1 48 0.0016 17.7 1.7 35 26-60 39-76 (111)
53 3ptm_A Beta-glucosidase OS4BGl 20.9 31 0.0011 26.0 1.0 32 17-48 122-155 (505)
54 1syr_A Thioredoxin; SGPP, stru 20.6 52 0.0018 17.9 1.7 33 28-60 45-79 (112)
55 2vg0_A Short-chain Z-isoprenyl 20.0 24 0.00083 23.9 0.2 19 37-57 47-65 (227)
56 3sgv_B Undecaprenyl pyrophosph 20.0 33 0.0011 24.0 0.9 21 37-59 61-81 (253)
No 1
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=99.93 E-value=4.5e-27 Score=154.47 Aligned_cols=56 Identities=36% Similarity=0.789 Sum_probs=53.5
Q ss_pred CchhhhhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 11 LDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 11 ~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
|.+++..+|||+||||+||+|++||++|+||+||+||.++++|+|+||||+||||+
T Consensus 8 m~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~ 63 (134)
T 2lyd_A 8 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYH 63 (134)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred cChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEE
Confidence 56688889999999999999999999999999999999999999999999999995
No 2
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=99.92 E-value=1.1e-26 Score=151.58 Aligned_cols=53 Identities=36% Similarity=0.676 Sum_probs=44.5
Q ss_pred hhhhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 14 QSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
..++++||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+
T Consensus 6 ~~r~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~ 58 (127)
T 2qkl_A 6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVK 58 (127)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEEEEEEECC------CCEEEEEEEEEEEE
T ss_pred HHHHHhHHHHHhhhCchHHHHhccCCeEEEEEecCCCCceEEcCcEEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999995
No 3
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=99.83 E-value=3.1e-22 Score=141.48 Aligned_cols=51 Identities=25% Similarity=0.595 Sum_probs=47.2
Q ss_pred hhhhcHHHHHhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 16 TKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 16 ~~~lNL~vL~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
+++|||+||+|+||.|++||++++||+||+||.++++|+|+++||+||||+
T Consensus 19 RkaLNlnVL~RyDP~IkqIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~ 69 (231)
T 1q67_A 19 RKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYL 69 (231)
T ss_dssp ---CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred HHHhHHHHHHhhChhHHHHHhcCCeEEEEEecCCCCceEecCcEEEEEEEE
Confidence 579999999999999999999999999999999999999999999999994
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=91.25 E-value=0.16 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.695 Sum_probs=22.6
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.||.++++|...|+ |.|-|.
T Consensus 27 ~raKL~~~~~~~~~WkerG~-G~lkil 52 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGI-GNVKIL 52 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEE-EEEEEE
T ss_pred EEEEEEEEcccCCCcccCcE-EEEEEE
Confidence 46899999988999999998 888765
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=90.74 E-value=0.19 Score=31.68 Aligned_cols=26 Identities=27% Similarity=0.790 Sum_probs=22.5
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.||.++++|.-.|+ |.|.|.
T Consensus 13 ~raKL~~~~~~~~~WkERG~-G~lkil 38 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGL-GNLKIL 38 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEEEEEEEcCCCCCcccCcE-EEEEEE
Confidence 45889999988999999998 888875
No 6
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=90.41 E-value=0.19 Score=31.97 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.5
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.||.++++|...|+ |.|-|.
T Consensus 16 ~raKL~~f~~~~~~WkerG~-G~lkil 41 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGV-GELKLL 41 (130)
T ss_dssp EEEEEEEECC---CEEEEEE-EEEEEE
T ss_pred EEEEEEEEeCCCCCchhcce-EEEEEE
Confidence 45889999998899999987 888774
No 7
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=88.94 E-value=0.31 Score=31.58 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=22.2
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.||.++++|...|+ |.|-|.
T Consensus 32 ~raKL~~fd~~~~~WkERG~-G~lkil 57 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGR-GLLRLN 57 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEeEEEEEcCCCCCccccee-EEEEEE
Confidence 35899999998999999987 888765
No 8
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=88.83 E-value=0.32 Score=31.03 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.4
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.||..+++|...|+ |.|-|.
T Consensus 20 ~raKL~~f~~~~~~WkERG~-G~lkil 45 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGR-GLLRLN 45 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEeEEEEEecCCCCchhceE-EEEEEE
Confidence 46889999988899999998 888775
No 9
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=86.33 E-value=0.55 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
+..|-||.|+.++++|...|+ |.|.|.
T Consensus 27 ~~raKLf~f~~~~~~WkerG~-G~lkil 53 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGT-GDCKFL 53 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEeEEEEEEcCCCCCcccccE-EEEEEE
Confidence 345889999988899999988 888774
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=82.01 E-value=0.92 Score=28.43 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=17.1
Q ss_pred CcEEEEEeeCCCCCeeecCcee
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEG 60 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEG 60 (66)
.-|.||.||+++++|.+.+ .|
T Consensus 9 ~~A~V~~~d~~~~~W~~~g-~G 29 (130)
T 1qc6_A 9 ARASVMVYDDTSKKWVPIK-PG 29 (130)
T ss_dssp EEEEEEEEETTTTEEEECC---
T ss_pred EEEEEEEECCCCCceeECC-CC
Confidence 4688999999999999998 55
No 11
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=80.33 E-value=1.2 Score=30.26 Aligned_cols=26 Identities=19% Similarity=0.644 Sum_probs=22.3
Q ss_pred CcEEEEEe--eCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEF--NIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f--~~~~~~WeK~~vEGtLFv~ 65 (66)
..|-||.| |..+++|.-.|+ |.|.|.
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGv-G~lkIl 78 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGT-GDVKLL 78 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEE-EEEEEE
T ss_pred EeeeEEEecccccCCCccccce-EEEEEE
Confidence 46899999 778899999998 888875
No 12
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=79.71 E-value=1.4 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
...|-||.|+..+++|.-.|+ |.|-|.
T Consensus 78 ~~RaKLf~f~~~~~~WKERGv-G~lkil 104 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGT-GDCKFL 104 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred EEeeEEEEEecCCCCccceeE-EEEEEE
Confidence 357999999988899999998 888774
No 13
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=78.97 E-value=1.2 Score=27.48 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.0
Q ss_pred CCcEEEEEeeCCCCCeeecCce
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vE 59 (66)
++-|.||.+|+.++.|.+.+-.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~ 29 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGS 29 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGC
T ss_pred EEEEEEEEEcCCCCceEECCCC
Confidence 4568999999999999999864
No 14
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=77.35 E-value=1 Score=27.92 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCcEEEEEeeCCCCCeeecCc--eee--EEEe
Q 039796 38 AAHVTFYEFNIDLSQWSRKDV--EGS--LFVV 65 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~v--EGt--LFv~ 65 (66)
++-|.||.+|+.++.|.+.+. +|. +-+|
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~ 39 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIY 39 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEE
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEE
Confidence 356889999999999999886 563 5554
No 15
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=69.24 E-value=6.1 Score=24.60 Aligned_cols=21 Identities=5% Similarity=0.359 Sum_probs=16.6
Q ss_pred CCcEEEEEeeCCCC-CeeecCc
Q 039796 38 AAHVTFYEFNIDLS-QWSRKDV 58 (66)
Q Consensus 38 as~v~vY~f~~~~~-~WeK~~v 58 (66)
++-|.||.+|+.++ .|.+.+-
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~ 29 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSK 29 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCS
T ss_pred EEEEEEEEEcCCCCCceEeCCC
Confidence 35688999999885 9999543
No 16
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=65.59 E-value=6.7 Score=24.26 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.8
Q ss_pred CCcEEEEEeeCCCCCeeecCcee
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEG 60 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEG 60 (66)
++-|.||.+|+.++.|.+.+--|
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~ 30 (118)
T 1xod_A 8 RVRAVVMTRDDSSGGWLQLGGGG 30 (118)
T ss_dssp EEEEEEEEECSSSSCEEEGGGCC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCC
Confidence 45688999999999999987533
No 17
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.29 E-value=9.3 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCcEEEEEeeCCCCCeeecCcee
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVEG 60 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vEG 60 (66)
++-|.||.+|+.++.|.+.+--|
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ 39 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGG 39 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCS
T ss_pred EEEEEEeeEcCCCCCEeeCCCCC
Confidence 46788999999999999988633
No 18
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.67 E-value=14 Score=21.67 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=27.6
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCcee--eEEEe
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVV 65 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEG--tLFv~ 65 (66)
++..|.+.++...-..+.++..|.+... ++-+|.| |+++|
T Consensus 46 ~~~~p~l~~la~~~~~v~~~~vd~~~~~-~~~~i~~~Pt~~~~ 87 (135)
T 2dbc_A 46 LVVNQHLSVLARKFPETKFVKAIVNSCI-EHYHDNCLPTIFVY 87 (135)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECCSSSC-SSCCSSCCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEhhcCc-ccCCCCCCCEEEEE
Confidence 4566777777777677888998876554 5667766 55554
No 19
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.68 E-value=9 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=19.4
Q ss_pred CcEEEEEeeCCCCCeeecCceeeEEEe
Q 039796 39 AHVTFYEFNIDLSQWSRKDVEGSLFVV 65 (66)
Q Consensus 39 s~v~vY~f~~~~~~WeK~~vEGtLFv~ 65 (66)
.-|-||.|+ +++|.-.|+ |+|-|-
T Consensus 18 ~raKLf~~~--~~~WkERGv-G~lki~ 41 (125)
T 2ec1_A 18 KKCKLFYKK--DNEFKEKGI-GTLHLK 41 (125)
T ss_dssp EEEEEEEEC--SSSEEEEEE-EEEEEE
T ss_pred EeeEEEEec--CCCcccccE-EEEEee
Confidence 457899996 689999998 888763
No 20
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=45.16 E-value=11 Score=22.32 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=28.1
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCCCeeecCcee--eEEEe
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVV 65 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~~WeK~~vEG--tLFv~ 65 (66)
|.++|.++++...-+.+.+++-|.+.. -++-+|.+ ||.+|
T Consensus 39 ~~~~p~l~~la~~~~~v~f~kvd~d~~-~~~~~v~~~PT~~~f 80 (118)
T 3evi_A 39 LLVNQHLSLLARKFPETKFVKAIVNSC-IQHYHDNCLPTIFVY 80 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEGGGT-STTCCGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHh-HHHCCCCCCCEEEEE
Confidence 567788888888778888889887654 24556666 55554
No 21
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=45.04 E-value=21 Score=23.66 Aligned_cols=21 Identities=5% Similarity=0.359 Sum_probs=16.8
Q ss_pred CCcEEEEEeeCCCC-CeeecCc
Q 039796 38 AAHVTFYEFNIDLS-QWSRKDV 58 (66)
Q Consensus 38 as~v~vY~f~~~~~-~WeK~~v 58 (66)
++-|.||.+|+.++ .|.+.+-
T Consensus 13 s~rA~Vm~~D~~tk~~WvP~g~ 34 (168)
T 1i2h_A 13 STRAHVFQIDPNTKKNWVPTSK 34 (168)
T ss_dssp EEEEEEEEECTTSSCCSEESCS
T ss_pred EEEEEEEEECCCCCCceeecCC
Confidence 45688999999876 9999654
No 22
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=44.34 E-value=20 Score=19.72 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.9
Q ss_pred hhCccHHHHhhhCC------cEEEEEeeCCCCCeeecCcee--eEEEe
Q 039796 26 LIDPFIEEILITAA------HVTFYEFNIDLSQWSRKDVEG--SLFVV 65 (66)
Q Consensus 26 R~Dp~I~~Il~~as------~v~vY~f~~~~~~WeK~~vEG--tLFv~ 65 (66)
+..|.+.++...-. .+.++..|.+.+...+ +|.| +++++
T Consensus 42 ~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~~~Pt~~~~ 88 (121)
T 2djj_A 42 ALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQGFPTIKLY 88 (121)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCSSSSEEEEE
T ss_pred HhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccCcCCeEEEE
Confidence 34444455444322 5788888877776666 7777 55555
No 23
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=37.37 E-value=17 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=14.6
Q ss_pred cEEEEEeeCCCCCeeec
Q 039796 40 HVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~ 56 (66)
.-.+|.||+++++|++.
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 45689999999999985
No 24
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=36.99 E-value=41 Score=18.15 Aligned_cols=36 Identities=17% Similarity=-0.017 Sum_probs=19.9
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
++..|.+.++....+.+.++..|.+.+. ..+-+|.|
T Consensus 34 ~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~ 71 (105)
T 4euy_A 34 DVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFT 71 (105)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEEECCC---------CC
T ss_pred HHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCC
Confidence 4456667777776677888888855443 34556666
No 25
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=35.29 E-value=29 Score=19.73 Aligned_cols=41 Identities=17% Similarity=0.411 Sum_probs=27.8
Q ss_pred HhhCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee--eEEEe
Q 039796 25 QLIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG--SLFVV 65 (66)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG--tLFv~ 65 (66)
++..|.++++....+.+.++..|.+.+. ..+-+|.| |+.++
T Consensus 36 ~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~ 80 (105)
T 3zzx_A 36 KMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFM 80 (105)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred cCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence 4566777777777788889998865442 34557777 55544
No 26
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=35.12 E-value=22 Score=23.08 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.6
Q ss_pred cEEEEEeeCCCCCeeec
Q 039796 40 HVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~ 56 (66)
.-.+|.||+++++|++.
T Consensus 267 ~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 267 LNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred cCcEEEecCCCChhhhh
Confidence 35689999999999986
No 27
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=32.41 E-value=26 Score=22.34 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=14.2
Q ss_pred EEEEEeeCCCCCeeec
Q 039796 41 VTFYEFNIDLSQWSRK 56 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~ 56 (66)
-.+|.||+++++|++.
T Consensus 269 ~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 269 SSIECYDPIIDSWEVV 284 (301)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred ccEEEEcCCCCeEEEc
Confidence 6789999999999975
No 28
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=32.04 E-value=48 Score=21.08 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=17.7
Q ss_pred CCcEEEEEeeCCCCCeeecCc
Q 039796 38 AAHVTFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~v 58 (66)
..-|.|..+|+.++.|.-.+=
T Consensus 15 ~~rA~Vm~~Dd~tk~WlP~gg 35 (130)
T 3syx_A 15 RVRAVVMTRDDSSGGWLPLGG 35 (130)
T ss_dssp EEEEEEEEECSSSSCEEESSS
T ss_pred EEEEEeeeEcCCCCceEeCCC
Confidence 356889999999999998763
No 29
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=31.59 E-value=24 Score=23.20 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=14.3
Q ss_pred EEEEEeeCCCCCeeecC
Q 039796 41 VTFYEFNIDLSQWSRKD 57 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~ 57 (66)
..+|.||+.+++|++..
T Consensus 86 ~~v~~yd~~~~~W~~~~ 102 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLM 102 (357)
T ss_dssp CCEEEEETTTTEEEECS
T ss_pred ccEEEEeCCCCcEEECC
Confidence 45899999999999754
No 30
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=31.40 E-value=37 Score=21.98 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=21.2
Q ss_pred hCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
.++-|-||.-++. +.|.+. ..|.+-++|
T Consensus 44 ataVaqLy~a~~~-~~W~~~-~~Gal~~Vk 71 (152)
T 1mke_A 44 SSAVVQLYAADRN-CMWSKK-CSGVACLVK 71 (152)
T ss_dssp EEEEEEEEEEETT-TEEEEE-EEEEEEEEE
T ss_pred EEeeEEEEEECCC-CceEec-CceEEEEEE
Confidence 3456779999864 799996 689887653
No 31
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=30.21 E-value=40 Score=22.19 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=21.3
Q ss_pred hCCcEEEEEeeCCCCCeeecCceeeEEEeC
Q 039796 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~vEGtLFv~k 66 (66)
.++-|-||.-++. +.|.+. ..|.+-+++
T Consensus 61 ataVaqLy~a~~~-~~W~~~-~~Gal~~vk 88 (169)
T 2ifs_A 61 SSAVVQLYAADRN-CMWSKK-CSGVACLVK 88 (169)
T ss_dssp EEEEEEEEEEETT-TEEEEE-EEEEEEEEE
T ss_pred EEEEEEEEEECCC-CeeEec-CceEEEEEE
Confidence 3456779999864 799996 689887664
No 32
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=29.63 E-value=30 Score=22.35 Aligned_cols=17 Identities=6% Similarity=0.354 Sum_probs=14.4
Q ss_pred cEEEEEeeCCCCCeeec
Q 039796 40 HVTFYEFNIDLSQWSRK 56 (66)
Q Consensus 40 ~v~vY~f~~~~~~WeK~ 56 (66)
.-.+|.||.++++|++.
T Consensus 230 ~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 230 LNSVERYDVETETWTFV 246 (308)
T ss_dssp CCCEEEEETTTTEEEEC
T ss_pred cceEEEEeCCCCcEEEC
Confidence 35689999999999975
No 33
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=28.96 E-value=31 Score=22.03 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEEEeeCCCCCeeecC
Q 039796 41 VTFYEFNIDLSQWSRKD 57 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~~ 57 (66)
..++.||+++++|++..
T Consensus 267 ~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 267 ASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CCEEEEETTTTEEEECS
T ss_pred ccEEEEcCCCCeEEECC
Confidence 45899999999999864
No 34
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=27.48 E-value=35 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=13.8
Q ss_pred EEEEEeeCCCCCeeec
Q 039796 41 VTFYEFNIDLSQWSRK 56 (66)
Q Consensus 41 v~vY~f~~~~~~WeK~ 56 (66)
-.+|.||+++++|++.
T Consensus 216 ~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 216 DNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CCEEEEETTTTEEEEC
T ss_pred ceEEEeeCCCCcEEEC
Confidence 4589999999999976
No 35
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=27.10 E-value=47 Score=20.45 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=27.4
Q ss_pred hhhcHHHHHhhCccHHHHhhh--CCc------EEEEEeeCCCCCee
Q 039796 17 KLLNLTVLQLIDPFIEEILIT--AAH------VTFYEFNIDLSQWS 54 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~------v~vY~f~~~~~~We 54 (66)
.++-+.+|+.+|.+|.+.|.. -+. ..-|+|- .+-|.
T Consensus 29 p~la~kVL~~FDksi~~aL~~~vksk~sfKG~L~tYrfc--DnVWT 72 (108)
T 1nvp_D 29 PQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFC--DNVWT 72 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEE--TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCeEeeccCCcccc--CcEEE
Confidence 356789999999999999984 333 3347776 78997
No 36
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans} PDB: 3pn8_A* 4f66_A* 4gpn_A* 4f79_A*
Probab=26.66 E-value=21 Score=26.73 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.3
Q ss_pred hhhcHHHHHhhCccHHHHhh--hCCcEEEEEeeC
Q 039796 17 KLLNLTVLQLIDPFIEEILI--TAAHVTFYEFNI 48 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~--~as~v~vY~f~~ 48 (66)
...|-.-|+.||.-|.+++. .-+.|+||+||.
T Consensus 103 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~Dl 136 (480)
T 4dde_A 103 AEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFEL 136 (480)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCcceEEeeCCCC
Confidence 46899999999999999987 479999999993
No 37
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=26.00 E-value=61 Score=19.89 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=21.9
Q ss_pred hhhcHHHH-HhhCccHHHHhhhCCcEEEEEeeCC
Q 039796 17 KLLNLTVL-QLIDPFIEEILITAAHVTFYEFNID 49 (66)
Q Consensus 17 ~~lNL~vL-~R~Dp~I~~Il~~as~v~vY~f~~~ 49 (66)
+.+|+..+ +..=..|.+++ .+..|.+|.|+++
T Consensus 8 ~sldl~~il~~~v~~v~~~l-~~DRv~Iy~f~~d 40 (171)
T 4glq_A 8 ELRDRQAIFETLVAKGRELL-ACDRVIVYAFDDN 40 (171)
T ss_dssp CTTHHHHHHHHHHHHHHHHH-TCSEEEEEEECTT
T ss_pred hcCCHHHHHHHHHHHHHHHH-CCCeEEEEEEeCC
Confidence 34555443 55556667766 4799999999965
No 38
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=25.97 E-value=29 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=28.5
Q ss_pred hhhcHHHHHhhCccHHHHhhh--CCcEEEEEeeC
Q 039796 17 KLLNLTVLQLIDPFIEEILIT--AAHVTFYEFNI 48 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~~ 48 (66)
.+.|-..|+.||.-|.+++.. -+.|+||+||.
T Consensus 110 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~dl 143 (540)
T 4a3y_A 110 GGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDV 143 (540)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCccceeccCCCC
Confidence 478999999999999999875 59999999993
No 39
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=25.92 E-value=34 Score=19.67 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=18.5
Q ss_pred hhCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 26 LIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 26 R~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
+..|.+.++....+.+.++..|.+.+. .++-+|.|
T Consensus 54 ~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~ 90 (125)
T 1r26_A 54 TIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ 90 (125)
T ss_dssp HTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc
Confidence 344555555555556777777755432 23345544
No 40
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=25.91 E-value=11 Score=22.67 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.2
Q ss_pred cHHHHHhhCccHHHHhhhCCcE
Q 039796 20 NLTVLQLIDPFIEEILITAAHV 41 (66)
Q Consensus 20 NL~vL~R~Dp~I~~Il~~as~v 41 (66)
+|..|-.+|..|.++|..++.+
T Consensus 6 RL~sL~~ID~~i~sLL~~as~~ 27 (86)
T 3r84_A 6 RLKSLNDIETQLCSMLQEASQV 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999988765
No 41
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=25.84 E-value=25 Score=24.32 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=8.4
Q ss_pred hCCcEEEEEeeCCCCCeeecCc
Q 039796 37 TAAHVTFYEFNIDLSQWSRKDV 58 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~v 58 (66)
.-.+++||.|+ +..|.+..-
T Consensus 64 GI~~lTlYaFS--teNwkRp~~ 83 (249)
T 1f75_A 64 GVKYLTLYAFS--TENWSRPKD 83 (249)
T ss_dssp TCCEEEEEEC------------
T ss_pred CCCEEEEEEec--ccccCCCHH
Confidence 35789999998 677987643
No 42
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=25.22 E-value=37 Score=19.07 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=18.4
Q ss_pred hCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 27 IDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 27 ~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
..|.+.++......+.++..|.+.+. .++-+|.|
T Consensus 41 ~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 76 (118)
T 2f51_A 41 LGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSS 76 (118)
T ss_dssp HHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS
T ss_pred HHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCC
Confidence 34444555444456777777755443 34455555
No 43
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=24.88 E-value=36 Score=20.06 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=19.1
Q ss_pred hhCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 26 LIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 26 R~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
+..|.+.++....+.+.++..|.+.+. .++-+|.|
T Consensus 49 ~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 85 (153)
T 2wz9_A 49 QMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISS 85 (153)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCC
Confidence 344455555555556777777755433 33445655
No 44
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=24.68 E-value=46 Score=19.49 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.8
Q ss_pred CCcEEEEEeeCCCCCe
Q 039796 38 AAHVTFYEFNIDLSQW 53 (66)
Q Consensus 38 as~v~vY~f~~~~~~W 53 (66)
..++-+|+||+.+|+=
T Consensus 37 ~g~iKIykyde~tNeI 52 (72)
T 3kvp_A 37 DGYIKIYEYNESRNEV 52 (72)
T ss_dssp TTEEEEEEEETTTTEE
T ss_pred CCEEEEEEeCCCCCeE
Confidence 4567899999998864
No 45
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=24.28 E-value=39 Score=18.25 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=18.4
Q ss_pred hCccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 27 IDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 27 ~Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
..|.+.++......+.++..|.+.+. .++-++.|
T Consensus 46 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~ 81 (118)
T 2vm1_A 46 IAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEA 81 (118)
T ss_dssp HHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS
T ss_pred HhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCc
Confidence 34555555555556777777754332 33445554
No 46
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=23.68 E-value=20 Score=26.61 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=27.9
Q ss_pred hhhcHHHHHhhCccHHHHhh--hCCcEEEEEee
Q 039796 17 KLLNLTVLQLIDPFIEEILI--TAAHVTFYEFN 47 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~--~as~v~vY~f~ 47 (66)
.+.|-.-|+.||.-|.+++. .-+.|+||+||
T Consensus 98 g~~N~~Gl~fY~~lid~l~~~GIeP~vTL~H~d 130 (458)
T 3ta9_A 98 GRVNQKGLDFYKRLVDNLLKANIRPMITLYHWD 130 (458)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 47899999999999999987 47899999999
No 47
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=23.51 E-value=25 Score=24.26 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=8.3
Q ss_pred CCcEEEEEeeCCCCCeeecCce
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vE 59 (66)
-.+++||.|+ +..|.+..-|
T Consensus 60 I~~lTlYaFS--teNwkRp~~E 79 (245)
T 2d2r_A 60 LECLTLYAFS--TENWKRPKSE 79 (245)
T ss_dssp CSEEEEECC------------C
T ss_pred CCEEEEEecc--CcccCCCHHH
Confidence 4789999998 6779876433
No 48
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=23.44 E-value=17 Score=27.02 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=28.5
Q ss_pred hhhcHHHHHhhCccHHHHhh--hCCcEEEEEeeC
Q 039796 17 KLLNLTVLQLIDPFIEEILI--TAAHVTFYEFNI 48 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~--~as~v~vY~f~~ 48 (66)
.+.|-.-|+-||.-|.+++. .-+.|+||+||.
T Consensus 121 ~~~N~~Gl~fY~~lid~Ll~~GIeP~VTL~H~Dl 154 (489)
T 4ha4_A 121 KMANRDAINHYREMFSDLRSRGITFILNLYHWPL 154 (489)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTTCEEEEESCSSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeeeEeecCCCc
Confidence 56799999999999999997 469999999993
No 49
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=22.97 E-value=28 Score=24.20 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=9.5
Q ss_pred CCcEEEEEeeCCCCCeeecCce
Q 039796 38 AAHVTFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 38 as~v~vY~f~~~~~~WeK~~vE 59 (66)
-.+++||.|+ +..|.+..-|
T Consensus 62 I~~lTlYaFS--tENwkRp~~E 81 (253)
T 3qas_B 62 IEALTLYAFS--SENWNRPAQE 81 (253)
T ss_dssp CSEEEEECCC--C---------
T ss_pred CCEEEEEEec--CcccCCCHHH
Confidence 5789999998 5669876433
No 50
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=22.50 E-value=47 Score=17.41 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=12.7
Q ss_pred CccHHHHhhhCCcEEEEEeeCCC
Q 039796 28 DPFIEEILITAAHVTFYEFNIDL 50 (66)
Q Consensus 28 Dp~I~~Il~~as~v~vY~f~~~~ 50 (66)
.|.+.++....+.+.++..|.+.
T Consensus 38 ~~~l~~~~~~~~~~~~~~v~~~~ 60 (104)
T 2vim_A 38 APKVEALAKEIPEVEFAKVDVDQ 60 (104)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTT
T ss_pred hHHHHHHHHHCCCCEEEEEeccC
Confidence 34445555444566777777544
No 51
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=22.24 E-value=32 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=28.3
Q ss_pred hhhcHHHHHhhCccHHHHhhh--CCcEEEEEeeC
Q 039796 17 KLLNLTVLQLIDPFIEEILIT--AAHVTFYEFNI 48 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~vY~f~~ 48 (66)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 99 g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~H~Dl 132 (487)
T 3vii_A 99 NIVNQDGIDYYNNLINELLANGIEPMVTMYHWDL 132 (487)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEEecCCC
Confidence 468999999999999999875 58999999993
No 52
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=22.14 E-value=48 Score=17.67 Aligned_cols=35 Identities=20% Similarity=0.511 Sum_probs=18.1
Q ss_pred hhCccHHHHhhhCC-cEEEEEeeCCCCC--eeecCcee
Q 039796 26 LIDPFIEEILITAA-HVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 26 R~Dp~I~~Il~~as-~v~vY~f~~~~~~--WeK~~vEG 60 (66)
+..|.+.++..... .+.++..|.+.+. ..+-+|.|
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 76 (111)
T 3gnj_A 39 KVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKG 76 (111)
T ss_dssp HHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCc
Confidence 34445555554444 4677777755443 33445555
No 53
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A*
Probab=20.94 E-value=31 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.2
Q ss_pred hhhcHHHHHhhCccHHHHhh--hCCcEEEEEeeC
Q 039796 17 KLLNLTVLQLIDPFIEEILI--TAAHVTFYEFNI 48 (66)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~--~as~v~vY~f~~ 48 (66)
.+.|-.-|+-||.-|.+++. .-+.|+||+||.
T Consensus 122 g~vN~~Gl~fY~~lid~l~~~GIeP~VTL~HwDl 155 (505)
T 3ptm_A 122 GGVNKEGIKYYNNLINELLSKGVQPFITLFHWDS 155 (505)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 36899999999999999987 568999999993
No 54
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=20.64 E-value=52 Score=17.93 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=16.4
Q ss_pred CccHHHHhhhCCcEEEEEeeCCCCC--eeecCcee
Q 039796 28 DPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG 60 (66)
Q Consensus 28 Dp~I~~Il~~as~v~vY~f~~~~~~--WeK~~vEG 60 (66)
.|.++++....+.+.++..|.+.+. ..+-+|.|
T Consensus 45 ~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 79 (112)
T 1syr_A 45 APFYEECSKTYTKMVFIKVDVDEVSEVTEKENITS 79 (112)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCc
Confidence 3444555554445666666654332 23344444
No 55
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=20.04 E-value=24 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=14.9
Q ss_pred hCCcEEEEEeeCCCCCeeecC
Q 039796 37 TAAHVTFYEFNIDLSQWSRKD 57 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~ 57 (66)
.-.+++||.|+ +..|.+..
T Consensus 47 GI~~lTlYaFS--teN~kRp~ 65 (227)
T 2vg0_A 47 GIELATVYLLS--TENLQRDP 65 (227)
T ss_dssp TCSEEEEEEEE--TGGGGSCH
T ss_pred CCCEEEEEeec--ccccCCCH
Confidence 45789999998 67787754
No 56
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=20.00 E-value=33 Score=23.99 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=8.5
Q ss_pred hCCcEEEEEeeCCCCCeeecCce
Q 039796 37 TAAHVTFYEFNIDLSQWSRKDVE 59 (66)
Q Consensus 37 ~as~v~vY~f~~~~~~WeK~~vE 59 (66)
.-.+++||.|+ +..|.+..-|
T Consensus 61 GI~~lTlYaFS--tENwkRp~~E 81 (253)
T 3sgv_B 61 GIEALTLYAFS--SENWNRPAQE 81 (253)
T ss_dssp TCSEEEEECC-------------
T ss_pred CCCEEEEEEEc--hhccCCCHHH
Confidence 35789999999 5669876544
Done!