BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039797
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
SV=1
Length = 1004
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 164/322 (50%), Gaps = 30/322 (9%)
Query: 100 EILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSV 159
E+ L+ ++EL++RE++ + + Y+ LKEQES ++EL+ + ++ +++L+ ++S+
Sbjct: 130 ELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSL 189
Query: 160 ESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESAD 219
++E K+L+ + V +L+ +++ L+R+++ +TK ++++ ++ +
Sbjct: 190 QAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKE 249
Query: 220 AELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASS------ 273
E + +E K A+Q LE ++ EL +LQ + EL KL ++
Sbjct: 250 EEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEKRELSIKLDSAEARIATLSNMTE 309
Query: 274 ---VTKIEDEGTTME-NYRQLLNECEQLQKDRAAEAKELIYLRWANACLRHE-------- 321
V K+ +E ++ N LL + E LQ +R +E +EL+YLRW NACLR+E
Sbjct: 310 SDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPA 369
Query: 322 -------LMRNQAQQEQNQEKNRIVEFVGG-GGIGDYGIEQHLDGLDMGNVEPCYNVANE 373
L +N + + Q + K ++E+ G G GD +E + + N + +
Sbjct: 370 GKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDLESNYSQPSSPGSDDFDNASMD 429
Query: 374 ----GSRAGSKRSRLLKRLKRW 391
+ SK+ L+++LK+W
Sbjct: 430 SSTSRFSSFSKKPGLIQKLKKW 451
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 OS=Caenorhabditis elegans
GN=ifa-2 PE=1 SV=1
Length = 581
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 75 EIITSTHFMKSKGDLEFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESL 134
EI T+T+ +K G +D E EI L+ Q++EL+K+ E Q R D + + L
Sbjct: 124 EITTATNVVKQTG----KDHGETEKEIRKLQDQLDELRKKFEEA--QRGRAEDRLKIDDL 177
Query: 135 LMELRNM---IFLEKSYVELLDREVSSVESENKRL 166
L+ L N+ I L K + LL+ EV+ ++ EN RL
Sbjct: 178 LVTLSNLEAEINLLKRRIALLEEEVARLKKENFRL 212
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 OS=Caenorhabditis elegans
GN=ifa-3 PE=1 SV=1
Length = 581
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 75 EIITSTHFMKSKGDLEFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESL 134
EI T+T+ +K G +D E EI ++ Q++EL+K+ E Q R D + + L
Sbjct: 124 EITTATNVVKETG----KDHEEAEKEIGKIKDQLDELRKKFEEA--QKGRAEDRLKIDEL 177
Query: 135 LMELRNM---IFLEKSYVELLDREVSSVESENKRL 166
L+ L N+ I L K + LL+ EV+ ++ EN RL
Sbjct: 178 LVTLSNLEAEINLLKRRIALLEEEVARLKKENFRL 212
>sp|Q9JIL8|RAD50_RAT DNA repair protein RAD50 OS=Rattus norvegicus GN=Rad50 PE=1 SV=1
Length = 1312
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 29/122 (23%)
Query: 173 YLKVLDQLQQWKSESGLLKRKVK------KLVRKTKELSDIIREQNLKIESADAELLRNC 226
Y+K LD L+Q + G +KVK K +R+ KE + IR+Q I S +A+L +
Sbjct: 185 YIKALDTLRQVRQTQG---QKVKECQTELKYLRQNKEKACEIRDQ---ITSKEAQLASSR 238
Query: 227 DVLEEKSN-----------------AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269
++++ N I +L+NE+K L S Q+++ NSEL K+++ Q
Sbjct: 239 EIVKAYENELEPLKNRLKEIEHNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQ 298
Query: 270 SA 271
Sbjct: 299 GT 300
>sp|P70388|RAD50_MOUSE DNA repair protein RAD50 OS=Mus musculus GN=Rad50 PE=1 SV=1
Length = 1312
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 29/122 (23%)
Query: 173 YLKVLDQLQQWKSESGLLKRKVK------KLVRKTKELSDIIREQNLKIESADAELLRNC 226
Y+K LD L+Q + G +KVK K +++ KE + IR+Q I S +A+L +
Sbjct: 185 YIKALDTLRQVRQTQG---QKVKECQTELKYLKQNKEKACEIRDQ---ITSKEAQLASSQ 238
Query: 227 DV-----------------LEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269
++ +E + I KL+NE+K L S Q+++ NSEL K+++ Q
Sbjct: 239 EIVRSYEDELEPLKNRLKEIEHNLSKIMKLDNEIKALESRKKQMEKDNSELEQKMEKVFQ 298
Query: 270 SA 271
Sbjct: 299 GT 300
>sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 OS=Homo sapiens GN=GOLGB1 PE=1 SV=2
Length = 3259
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 229 LEEKSNAIQKLENELKELHSVIDQLQEQNSELL-NKLQEWHQSASSVTKIEDE 280
+EEK++ I L+ +EL S D L++QNS+LL +K ++ QSA ++ ++ED+
Sbjct: 374 MEEKTSHILSLQKTGQELQSACDALKDQNSKLLQDKNEQAVQSAQTIQQLEDQ 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,730,591
Number of Sequences: 539616
Number of extensions: 6437556
Number of successful extensions: 34385
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 2040
Number of HSP's that attempted gapping in prelim test: 28288
Number of HSP's gapped (non-prelim): 5711
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)