Query 039797
Match_columns 437
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 13:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 97.4 0.29 6.2E-06 55.2 30.8 26 98-123 676-701 (1179)
2 KOG4673 Transcription factor T 97.4 0.013 2.7E-07 65.1 19.1 122 149-271 490-628 (961)
3 PHA02562 46 endonuclease subun 97.4 0.22 4.8E-06 52.6 27.8 64 236-308 339-402 (562)
4 COG1196 Smc Chromosome segrega 97.2 0.48 1E-05 55.6 30.9 78 99-176 232-317 (1163)
5 PRK02224 chromosome segregatio 97.2 0.36 7.7E-06 54.2 28.0 24 241-264 349-372 (880)
6 PRK03918 chromosome segregatio 97.2 0.24 5.1E-06 55.3 26.3 115 103-220 166-283 (880)
7 PF09726 Macoilin: Transmembra 97.1 0.22 4.9E-06 55.8 25.3 30 96-125 422-451 (697)
8 PF12718 Tropomyosin_1: Tropom 97.1 0.045 9.7E-07 49.9 16.6 118 132-270 20-137 (143)
9 KOG0977 Nuclear envelope prote 97.1 0.19 4.1E-06 55.0 23.8 103 129-231 144-271 (546)
10 TIGR02168 SMC_prok_B chromosom 97.0 0.93 2E-05 51.1 31.7 27 99-125 670-696 (1179)
11 COG1196 Smc Chromosome segrega 97.0 0.73 1.6E-05 54.1 29.2 40 134-173 703-742 (1163)
12 KOG0996 Structural maintenance 97.0 0.19 4.1E-06 58.8 23.7 197 98-303 784-1016(1293)
13 KOG0980 Actin-binding protein 96.8 0.99 2.1E-05 51.9 27.2 220 93-325 327-562 (980)
14 PRK02224 chromosome segregatio 96.8 1.3 2.9E-05 49.7 28.5 60 138-197 521-584 (880)
15 TIGR02169 SMC_prok_A chromosom 96.8 1.5 3.3E-05 49.8 31.2 9 148-156 302-310 (1164)
16 KOG0971 Microtubule-associated 96.7 1.1 2.4E-05 51.9 26.4 110 155-264 369-495 (1243)
17 PHA02562 46 endonuclease subun 96.7 0.3 6.4E-06 51.7 21.3 175 94-270 176-394 (562)
18 TIGR00606 rad50 rad50. This fa 96.6 0.46 9.9E-06 56.4 24.2 65 105-173 798-862 (1311)
19 PF05667 DUF812: Protein of un 96.6 0.66 1.4E-05 51.3 23.6 85 227-311 440-541 (594)
20 PLN03188 kinesin-12 family pro 96.6 0.49 1.1E-05 56.0 23.2 66 240-307 1172-1247(1320)
21 KOG0161 Myosin class II heavy 96.5 1.6 3.5E-05 54.1 27.8 166 97-271 906-1078(1930)
22 PRK03918 chromosome segregatio 96.5 2.1 4.6E-05 48.0 28.8 15 287-301 461-475 (880)
23 KOG0977 Nuclear envelope prote 96.4 0.41 8.9E-06 52.5 20.0 33 234-266 162-194 (546)
24 KOG4643 Uncharacterized coiled 96.3 0.33 7.1E-06 56.3 19.7 165 83-261 161-335 (1195)
25 KOG0161 Myosin class II heavy 96.3 1.1 2.3E-05 55.5 25.0 121 146-269 998-1118(1930)
26 KOG0250 DNA repair protein RAD 96.3 0.65 1.4E-05 54.2 21.9 152 97-248 666-839 (1074)
27 TIGR00606 rad50 rad50. This fa 96.2 3 6.5E-05 49.7 27.6 31 237-267 994-1024(1311)
28 PF10174 Cast: RIM-binding pro 96.1 3.1 6.8E-05 47.5 26.0 163 133-298 343-541 (775)
29 PF13851 GAS: Growth-arrest sp 95.9 1.7 3.7E-05 41.7 22.4 97 98-218 26-122 (201)
30 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.4 2.9E-05 39.4 17.7 85 165-266 46-130 (132)
31 KOG0982 Centrosomal protein Nu 95.6 1.6 3.4E-05 46.9 19.7 89 94-182 217-332 (502)
32 TIGR01843 type_I_hlyD type I s 95.6 3 6.4E-05 42.1 24.7 33 91-123 73-105 (423)
33 PF07888 CALCOCO1: Calcium bin 95.5 5.3 0.00011 44.1 27.4 128 133-270 171-298 (546)
34 PF06818 Fez1: Fez1; InterPro 95.4 2.5 5.5E-05 41.2 19.0 76 98-173 30-106 (202)
35 PRK09039 hypothetical protein; 95.4 1.3 2.9E-05 45.6 18.2 23 149-171 83-105 (343)
36 PF05622 HOOK: HOOK protein; 95.4 0.0043 9.3E-08 68.6 0.0 33 286-318 392-424 (713)
37 PF04849 HAP1_N: HAP1 N-termin 95.4 0.84 1.8E-05 46.9 16.2 109 147-268 160-268 (306)
38 PRK11637 AmiB activator; Provi 95.3 4.4 9.4E-05 42.4 26.9 30 237-266 187-216 (428)
39 PF12325 TMF_TATA_bd: TATA ele 95.3 0.95 2.1E-05 40.6 14.5 78 133-210 16-93 (120)
40 KOG4673 Transcription factor T 95.2 7.6 0.00017 44.2 25.4 182 83-267 330-531 (961)
41 PRK04863 mukB cell division pr 95.1 11 0.00025 46.0 30.2 163 101-269 309-477 (1486)
42 TIGR01000 bacteriocin_acc bact 95.1 4.3 9.4E-05 42.7 21.1 32 92-123 90-121 (457)
43 COG1579 Zn-ribbon protein, pos 95.1 3.1 6.8E-05 41.4 18.8 110 138-269 29-138 (239)
44 PRK01156 chromosome segregatio 95.1 8 0.00017 43.9 28.5 18 98-115 482-499 (895)
45 PRK11637 AmiB activator; Provi 95.0 5.5 0.00012 41.7 26.0 80 97-176 45-125 (428)
46 PF08317 Spc7: Spc7 kinetochor 95.0 0.96 2.1E-05 45.9 15.3 17 241-257 276-292 (325)
47 KOG0963 Transcription factor/C 94.9 8.2 0.00018 43.2 26.1 137 108-248 120-263 (629)
48 smart00787 Spc7 Spc7 kinetocho 94.9 1 2.2E-05 46.1 15.3 115 99-216 165-284 (312)
49 PF08317 Spc7: Spc7 kinetochor 94.9 5.1 0.00011 40.7 26.0 154 99-268 75-250 (325)
50 PF13851 GAS: Growth-arrest sp 94.8 3.3 7.1E-05 39.8 17.8 119 121-267 13-133 (201)
51 COG4942 Membrane-bound metallo 94.7 7.3 0.00016 41.8 24.2 81 97-183 43-124 (420)
52 COG1579 Zn-ribbon protein, pos 94.7 5 0.00011 40.0 19.0 26 239-264 147-172 (239)
53 PF06548 Kinesin-related: Kine 94.6 4.3 9.3E-05 43.9 19.4 67 240-308 402-478 (488)
54 PF14662 CCDC155: Coiled-coil 94.6 4.9 0.00011 39.0 23.4 163 97-265 20-189 (193)
55 KOG0933 Structural maintenance 94.5 14 0.00029 43.8 30.7 64 94-157 669-732 (1174)
56 PF00038 Filament: Intermediat 94.4 5.8 0.00013 39.2 26.3 34 94-127 49-82 (312)
57 PRK01156 chromosome segregatio 94.3 12 0.00026 42.5 28.5 94 97-194 474-567 (895)
58 KOG0933 Structural maintenance 94.2 15 0.00033 43.4 24.5 153 116-270 772-935 (1174)
59 PF12128 DUF3584: Protein of u 94.0 18 0.00038 43.2 27.5 78 236-316 727-806 (1201)
60 PF07888 CALCOCO1: Calcium bin 93.9 13 0.00027 41.3 27.5 23 101-123 159-181 (546)
61 KOG0612 Rho-associated, coiled 93.9 19 0.00041 43.3 26.1 81 101-181 467-549 (1317)
62 PRK09039 hypothetical protein; 93.8 3.6 7.8E-05 42.5 16.7 76 94-169 76-152 (343)
63 KOG0976 Rho/Rac1-interacting s 93.8 17 0.00036 42.3 24.9 55 97-151 97-166 (1265)
64 PF00261 Tropomyosin: Tropomyo 93.8 7 0.00015 38.0 20.6 151 101-268 3-161 (237)
65 PF11365 DUF3166: Protein of u 93.8 0.65 1.4E-05 40.4 9.5 78 135-216 3-89 (96)
66 PF05557 MAD: Mitotic checkpoi 93.6 0.02 4.4E-07 63.5 0.0 86 130-216 227-318 (722)
67 PF05667 DUF812: Protein of un 93.2 6.4 0.00014 43.8 18.4 12 239-250 424-435 (594)
68 KOG0250 DNA repair protein RAD 92.9 25 0.00054 41.8 26.3 27 238-264 405-431 (1074)
69 PF06785 UPF0242: Uncharacteri 92.9 7.7 0.00017 40.8 17.2 88 102-192 85-173 (401)
70 COG2433 Uncharacterized conser 92.7 1.6 3.4E-05 48.6 12.7 55 142-199 417-471 (652)
71 KOG4643 Uncharacterized coiled 92.7 27 0.00058 41.5 24.1 76 99-174 257-342 (1195)
72 KOG0963 Transcription factor/C 92.6 21 0.00046 40.1 22.8 97 105-201 144-265 (629)
73 PF09789 DUF2353: Uncharacteri 92.4 15 0.00033 38.1 21.6 119 97-215 21-173 (319)
74 PF15619 Lebercilin: Ciliary p 92.2 11 0.00025 36.2 20.2 14 285-298 171-184 (194)
75 PF09730 BicD: Microtubule-ass 92.2 14 0.00031 42.0 19.6 133 121-268 15-148 (717)
76 COG0419 SbcC ATPase involved i 92.0 28 0.00061 40.1 28.0 43 152-194 557-602 (908)
77 PF10186 Atg14: UV radiation r 91.9 12 0.00027 36.0 18.3 26 150-175 23-48 (302)
78 PF04156 IncA: IncA protein; 91.9 10 0.00022 35.0 15.5 31 235-265 152-182 (191)
79 TIGR01005 eps_transp_fam exopo 91.9 25 0.00053 39.4 23.6 55 216-270 351-405 (754)
80 KOG1029 Endocytic adaptor prot 91.9 26 0.00056 40.7 20.8 34 236-269 488-521 (1118)
81 PF00038 Filament: Intermediat 91.6 15 0.00033 36.3 27.4 163 99-267 82-256 (312)
82 TIGR03007 pepcterm_ChnLen poly 91.6 21 0.00045 37.7 22.8 63 238-300 314-384 (498)
83 COG0419 SbcC ATPase involved i 91.5 31 0.00067 39.8 24.9 24 104-127 230-253 (908)
84 KOG3091 Nuclear pore complex, 91.1 6.5 0.00014 42.9 14.8 109 136-259 337-446 (508)
85 TIGR03007 pepcterm_ChnLen poly 90.8 24 0.00053 37.2 19.0 66 133-198 161-231 (498)
86 KOG0971 Microtubule-associated 90.6 42 0.00091 39.7 27.6 164 104-267 229-443 (1243)
87 TIGR03017 EpsF chain length de 90.6 23 0.00051 36.6 20.1 20 281-300 352-371 (444)
88 KOG4809 Rab6 GTPase-interactin 90.5 24 0.00053 39.3 18.5 191 97-301 241-461 (654)
89 KOG0946 ER-Golgi vesicle-tethe 90.5 30 0.00065 40.3 19.7 46 125-170 662-708 (970)
90 KOG0996 Structural maintenance 90.4 48 0.001 40.0 26.5 13 345-357 620-633 (1293)
91 PF10473 CENP-F_leu_zip: Leuci 90.4 15 0.00032 34.0 17.5 116 136-264 6-124 (140)
92 PF08614 ATG16: Autophagy prot 90.4 3.6 7.9E-05 38.8 11.0 20 245-264 162-181 (194)
93 KOG4674 Uncharacterized conser 90.1 61 0.0013 40.8 28.1 104 99-215 1236-1358(1822)
94 COG4942 Membrane-bound metallo 90.1 30 0.00066 37.3 23.8 33 232-264 159-191 (420)
95 PF09726 Macoilin: Transmembra 90.0 40 0.00086 38.4 24.5 94 216-309 548-646 (697)
96 KOG0978 E3 ubiquitin ligase in 90.0 40 0.00087 38.5 23.9 223 97-327 398-642 (698)
97 KOG0612 Rho-associated, coiled 90.0 53 0.0011 39.8 27.7 20 242-261 582-601 (1317)
98 PF05557 MAD: Mitotic checkpoi 89.9 1 2.3E-05 50.2 8.2 70 98-167 363-433 (722)
99 PF10168 Nup88: Nuclear pore c 89.6 24 0.00052 40.2 18.4 68 131-201 556-623 (717)
100 PF15290 Syntaphilin: Golgi-lo 89.6 16 0.00035 37.6 15.3 52 128-196 84-135 (305)
101 PF15070 GOLGA2L5: Putative go 89.5 41 0.00088 37.8 24.9 84 97-183 85-172 (617)
102 KOG0946 ER-Golgi vesicle-tethe 89.4 33 0.0007 40.0 18.9 84 216-299 809-899 (970)
103 TIGR00998 8a0101 efflux pump m 89.4 24 0.00051 34.9 16.4 89 93-194 74-162 (334)
104 PF05622 HOOK: HOOK protein; 89.1 0.12 2.5E-06 57.6 0.0 157 148-322 240-400 (713)
105 KOG4674 Uncharacterized conser 89.1 72 0.0016 40.2 27.4 29 289-317 1480-1508(1822)
106 COG3883 Uncharacterized protei 89.1 28 0.00061 35.4 20.1 59 138-199 50-108 (265)
107 PF00261 Tropomyosin: Tropomyo 89.0 24 0.00051 34.4 27.9 36 235-270 156-191 (237)
108 KOG0239 Kinesin (KAR3 subfamil 89.0 23 0.00049 40.2 17.5 39 133-171 182-220 (670)
109 KOG1029 Endocytic adaptor prot 88.7 38 0.00082 39.4 18.8 162 99-262 393-591 (1118)
110 PRK10361 DNA recombination pro 88.7 41 0.00089 36.8 23.0 70 189-265 122-196 (475)
111 PF09755 DUF2046: Uncharacteri 88.7 33 0.00071 35.7 21.8 22 102-123 23-44 (310)
112 COG2433 Uncharacterized conser 88.6 8.3 0.00018 43.2 13.5 58 135-192 431-488 (652)
113 PRK10884 SH3 domain-containing 88.4 11 0.00023 36.7 12.8 41 150-193 128-168 (206)
114 PF08614 ATG16: Autophagy prot 88.3 3.3 7.2E-05 39.0 9.1 40 232-271 128-167 (194)
115 TIGR00634 recN DNA repair prot 88.1 31 0.00067 37.7 17.4 16 379-394 478-493 (563)
116 PF01486 K-box: K-box region; 88.1 1.4 3.1E-05 37.3 5.9 74 94-171 14-99 (100)
117 COG3883 Uncharacterized protei 88.0 33 0.00072 34.9 20.2 65 128-195 33-97 (265)
118 KOG0243 Kinesin-like protein [ 87.8 68 0.0015 38.3 22.1 148 97-269 409-560 (1041)
119 PF09728 Taxilin: Myosin-like 87.6 27 0.00059 35.7 15.8 100 151-267 47-147 (309)
120 PF06632 XRCC4: DNA double-str 87.2 11 0.00025 39.2 12.9 61 152-218 149-209 (342)
121 PRK12704 phosphodiesterase; Pr 86.4 51 0.0011 36.2 17.9 6 289-294 158-163 (520)
122 PF05483 SCP-1: Synaptonemal c 86.1 70 0.0015 36.7 20.4 42 224-265 577-625 (786)
123 TIGR01000 bacteriocin_acc bact 86.1 50 0.0011 35.0 18.8 28 13-40 16-44 (457)
124 TIGR03319 YmdA_YtgF conserved 86.1 54 0.0012 36.0 17.9 9 226-234 96-104 (514)
125 PF09730 BicD: Microtubule-ass 86.1 71 0.0015 36.7 21.6 13 99-111 265-277 (717)
126 KOG0979 Structural maintenance 86.1 83 0.0018 37.5 21.8 144 108-265 161-307 (1072)
127 PRK10476 multidrug resistance 86.0 41 0.00088 33.9 17.0 45 148-192 122-166 (346)
128 KOG1003 Actin filament-coating 86.0 37 0.0008 33.4 19.9 35 146-180 3-37 (205)
129 KOG0018 Structural maintenance 86.0 83 0.0018 37.7 19.9 30 282-311 811-840 (1141)
130 KOG0995 Centromere-associated 85.9 65 0.0014 36.1 19.7 26 148-173 253-278 (581)
131 KOG0249 LAR-interacting protei 85.8 60 0.0013 37.5 18.2 84 98-188 104-187 (916)
132 KOG0995 Centromere-associated 85.8 66 0.0014 36.1 27.8 61 111-171 264-325 (581)
133 PF15619 Lebercilin: Ciliary p 85.6 36 0.00077 32.8 22.4 10 135-144 14-23 (194)
134 PF15070 GOLGA2L5: Putative go 85.5 69 0.0015 36.1 27.0 101 101-201 17-138 (617)
135 KOG4593 Mitotic checkpoint pro 85.4 75 0.0016 36.4 26.1 55 101-155 107-162 (716)
136 PF06005 DUF904: Protein of un 85.1 15 0.00032 30.3 10.1 61 135-195 6-70 (72)
137 PRK04778 septation ring format 85.0 65 0.0014 35.4 25.2 14 97-110 254-267 (569)
138 smart00787 Spc7 Spc7 kinetocho 84.8 51 0.0011 34.0 25.2 40 101-142 72-119 (312)
139 KOG4360 Uncharacterized coiled 84.7 42 0.0009 37.3 15.9 98 98-196 103-223 (596)
140 KOG0982 Centrosomal protein Nu 84.2 69 0.0015 35.0 18.3 28 13-40 16-43 (502)
141 PF09755 DUF2046: Uncharacteri 84.0 58 0.0013 33.9 20.8 28 241-268 106-133 (310)
142 PF15035 Rootletin: Ciliary ro 83.6 42 0.00092 32.0 16.2 102 152-256 62-163 (182)
143 TIGR01005 eps_transp_fam exopo 83.5 83 0.0018 35.3 19.2 19 19-37 21-39 (754)
144 PRK04863 mukB cell division pr 83.4 1.3E+02 0.0028 37.5 28.3 41 147-187 390-430 (1486)
145 PF05278 PEARLI-4: Arabidopsis 83.1 58 0.0013 33.3 16.1 125 145-269 124-256 (269)
146 PF14662 CCDC155: Coiled-coil 83.1 49 0.0011 32.4 25.3 88 103-203 5-92 (193)
147 PF04859 DUF641: Plant protein 82.8 2.3 5E-05 38.8 4.9 41 129-169 90-130 (131)
148 PRK04778 septation ring format 82.5 82 0.0018 34.6 21.5 62 155-216 276-337 (569)
149 KOG0999 Microtubule-associated 82.4 13 0.00029 41.5 11.2 87 94-183 144-234 (772)
150 KOG0980 Actin-binding protein 81.6 1.2E+02 0.0026 35.9 29.1 127 98-224 350-487 (980)
151 PF00769 ERM: Ezrin/radixin/mo 81.4 56 0.0012 32.3 14.4 70 237-308 57-126 (246)
152 TIGR03185 DNA_S_dndD DNA sulfu 81.3 95 0.0021 34.5 18.3 14 251-264 505-518 (650)
153 PRK15422 septal ring assembly 81.1 18 0.00039 30.7 9.2 60 135-194 6-76 (79)
154 TIGR02680 conserved hypothetic 81.1 1.4E+02 0.0031 36.4 28.3 37 92-128 223-259 (1353)
155 PF09728 Taxilin: Myosin-like 80.5 73 0.0016 32.7 26.8 98 200-299 185-300 (309)
156 PF10226 DUF2216: Uncharacteri 80.1 62 0.0014 31.7 14.1 80 154-253 55-134 (195)
157 KOG0979 Structural maintenance 80.0 1.4E+02 0.0031 35.7 24.0 21 251-271 335-355 (1072)
158 COG5185 HEC1 Protein involved 79.9 1E+02 0.0023 34.2 17.2 58 138-195 254-312 (622)
159 TIGR03794 NHPM_micro_HlyD NHPM 79.4 84 0.0018 32.7 21.5 28 93-120 90-117 (421)
160 PF10498 IFT57: Intra-flagella 79.1 63 0.0014 34.0 14.6 84 114-198 216-300 (359)
161 PF15397 DUF4618: Domain of un 78.9 78 0.0017 32.1 20.5 28 283-311 205-232 (258)
162 PF06818 Fez1: Fez1; InterPro 78.9 69 0.0015 31.5 14.9 99 145-253 8-106 (202)
163 PF10174 Cast: RIM-binding pro 78.6 1.4E+02 0.003 34.8 29.7 59 215-273 366-424 (775)
164 KOG0994 Extracellular matrix g 77.7 1E+02 0.0022 37.7 16.7 122 144-268 1616-1744(1758)
165 PF07106 TBPIP: Tat binding pr 77.4 22 0.00047 32.7 9.6 61 97-161 77-137 (169)
166 PRK10884 SH3 domain-containing 77.4 31 0.00067 33.6 11.0 24 243-266 134-157 (206)
167 KOG0249 LAR-interacting protei 77.2 77 0.0017 36.7 15.2 48 135-183 93-140 (916)
168 PF05911 DUF869: Plant protein 77.2 1.5E+02 0.0033 34.4 20.4 114 129-250 81-206 (769)
169 PF04012 PspA_IM30: PspA/IM30 76.6 70 0.0015 30.3 20.3 119 150-270 26-148 (221)
170 PF07798 DUF1640: Protein of u 76.4 67 0.0015 30.0 12.8 12 132-143 57-68 (177)
171 PF07106 TBPIP: Tat binding pr 76.1 22 0.00047 32.7 9.2 83 237-319 75-163 (169)
172 PF05483 SCP-1: Synaptonemal c 76.1 1.6E+02 0.0034 34.1 26.3 21 100-120 423-443 (786)
173 PF13870 DUF4201: Domain of un 76.1 66 0.0014 29.8 20.0 121 144-264 3-135 (177)
174 COG4913 Uncharacterized protei 75.9 1.7E+02 0.0037 34.4 18.7 102 97-199 614-719 (1104)
175 PF05911 DUF869: Plant protein 75.5 1.7E+02 0.0036 34.1 22.0 127 143-270 585-716 (769)
176 PF13874 Nup54: Nucleoporin co 75.4 23 0.00051 32.0 9.1 92 136-234 33-124 (141)
177 KOG0018 Structural maintenance 75.4 2E+02 0.0042 34.8 24.1 34 235-268 403-436 (1141)
178 PF05701 WEMBL: Weak chloropla 75.2 1.3E+02 0.0029 32.8 29.7 51 147-197 211-261 (522)
179 KOG0976 Rho/Rac1-interacting s 74.9 1.9E+02 0.004 34.4 24.3 46 141-186 236-281 (1265)
180 KOG1937 Uncharacterized conser 74.8 1.4E+02 0.003 32.9 28.9 46 97-142 229-274 (521)
181 PF15254 CCDC14: Coiled-coil d 74.7 1.7E+02 0.0037 34.2 17.1 61 148-211 421-481 (861)
182 PF15294 Leu_zip: Leucine zipp 74.5 1.1E+02 0.0024 31.5 15.3 101 149-256 127-237 (278)
183 PF01576 Myosin_tail_1: Myosin 74.3 1 2.2E-05 51.7 0.0 92 95-186 359-465 (859)
184 PF10186 Atg14: UV radiation r 73.9 88 0.0019 30.2 19.4 27 99-125 20-46 (302)
185 PF12718 Tropomyosin_1: Tropom 73.9 72 0.0016 29.2 19.7 62 135-196 30-91 (143)
186 PRK12704 phosphodiesterase; Pr 73.7 1.5E+02 0.0032 32.7 17.2 7 310-316 319-325 (520)
187 PF05266 DUF724: Protein of un 73.6 59 0.0013 31.3 11.7 29 169-197 70-98 (190)
188 PF14197 Cep57_CLD_2: Centroso 73.1 50 0.0011 27.0 9.5 57 133-199 5-61 (69)
189 PRK09841 cryptic autophosphory 72.7 1.7E+02 0.0038 33.1 17.1 44 227-270 356-399 (726)
190 PF12325 TMF_TATA_bd: TATA ele 72.5 54 0.0012 29.5 10.5 24 149-172 18-41 (120)
191 PF13863 DUF4200: Domain of un 71.8 65 0.0014 27.8 11.2 78 100-177 26-111 (126)
192 PF09789 DUF2353: Uncharacteri 71.2 1.4E+02 0.003 31.3 19.9 13 100-112 7-19 (319)
193 KOG0804 Cytoplasmic Zn-finger 70.6 1.6E+02 0.0034 32.5 15.0 12 180-191 412-423 (493)
194 PF04111 APG6: Autophagy prote 70.5 1E+02 0.0022 31.6 13.3 34 236-269 101-134 (314)
195 KOG0239 Kinesin (KAR3 subfamil 70.3 2E+02 0.0044 32.8 17.7 21 298-318 374-396 (670)
196 PF14197 Cep57_CLD_2: Centroso 70.1 44 0.00096 27.3 8.6 11 99-109 5-15 (69)
197 PF05701 WEMBL: Weak chloropla 69.8 1.8E+02 0.0038 31.9 28.1 35 286-327 373-407 (522)
198 PF10482 CtIP_N: Tumour-suppre 69.4 46 0.00099 30.3 9.2 74 97-170 12-119 (120)
199 PRK11281 hypothetical protein; 69.3 2.5E+02 0.0054 34.1 17.7 47 150-196 124-174 (1113)
200 KOG0978 E3 ubiquitin ligase in 68.8 2.3E+02 0.0049 32.8 28.7 169 149-322 425-610 (698)
201 PF07111 HCR: Alpha helical co 68.8 2.3E+02 0.005 32.8 22.1 153 147-312 101-271 (739)
202 KOG4787 Uncharacterized conser 68.1 93 0.002 35.4 13.0 162 99-267 332-548 (852)
203 KOG0804 Cytoplasmic Zn-finger 67.9 1.8E+02 0.0039 32.1 14.8 20 249-268 436-455 (493)
204 PF11365 DUF3166: Protein of u 67.6 33 0.00071 30.0 7.7 78 174-258 4-93 (96)
205 TIGR02680 conserved hypothetic 67.5 3E+02 0.0066 33.8 26.5 23 18-40 619-641 (1353)
206 COG1566 EmrA Multidrug resista 67.4 1.7E+02 0.0037 30.8 14.4 76 92-187 84-160 (352)
207 PF07989 Microtub_assoc: Micro 66.8 62 0.0013 26.9 8.9 66 128-195 2-67 (75)
208 COG3074 Uncharacterized protei 66.4 62 0.0013 27.3 8.7 47 135-181 6-52 (79)
209 COG4026 Uncharacterized protei 65.6 57 0.0012 33.0 9.9 29 236-264 158-186 (290)
210 PRK09343 prefoldin subunit bet 64.7 1E+02 0.0022 27.3 13.1 47 139-185 6-52 (121)
211 PF09744 Jnk-SapK_ap_N: JNK_SA 64.3 1.3E+02 0.0028 28.3 13.5 41 181-221 85-128 (158)
212 PF06156 DUF972: Protein of un 64.2 35 0.00077 30.1 7.4 48 134-181 9-56 (107)
213 PF03962 Mnd1: Mnd1 family; I 63.9 1.3E+02 0.0028 28.8 11.7 37 174-210 106-142 (188)
214 PRK10929 putative mechanosensi 63.6 3.4E+02 0.0074 33.0 17.8 9 314-322 266-274 (1109)
215 COG5185 HEC1 Protein involved 63.3 2.5E+02 0.0055 31.4 23.3 63 134-196 331-400 (622)
216 TIGR03752 conj_TIGR03752 integ 63.2 30 0.00065 37.8 8.1 72 224-303 56-127 (472)
217 TIGR02449 conserved hypothetic 63.0 67 0.0015 26.3 8.2 51 146-196 6-60 (65)
218 PF01576 Myosin_tail_1: Myosin 62.7 2.5 5.3E-05 48.6 0.0 33 236-268 421-453 (859)
219 COG4026 Uncharacterized protei 62.7 68 0.0015 32.5 9.9 49 122-170 137-186 (290)
220 PF05010 TACC: Transforming ac 62.4 1.6E+02 0.0035 28.9 21.7 28 96-123 6-33 (207)
221 COG1340 Uncharacterized archae 62.2 2E+02 0.0044 29.9 24.4 29 99-127 48-76 (294)
222 PF09787 Golgin_A5: Golgin sub 62.2 2.4E+02 0.0052 30.7 19.1 19 309-327 444-463 (511)
223 TIGR03545 conserved hypothetic 62.2 70 0.0015 35.5 10.9 64 146-209 190-257 (555)
224 PF04111 APG6: Autophagy prote 61.9 2E+02 0.0042 29.6 13.5 23 147-169 57-79 (314)
225 PF11559 ADIP: Afadin- and alp 61.6 1.2E+02 0.0027 27.2 18.1 14 95-108 31-44 (151)
226 PRK13729 conjugal transfer pil 61.5 18 0.0004 39.4 6.2 20 151-170 101-120 (475)
227 PF07111 HCR: Alpha helical co 61.0 3.2E+02 0.0069 31.8 23.8 165 97-263 71-264 (739)
228 TIGR02132 phaR_Bmeg polyhydrox 60.9 1.7E+02 0.0037 28.6 12.3 92 96-207 69-168 (189)
229 TIGR03319 YmdA_YtgF conserved 60.7 2.6E+02 0.0057 30.7 19.0 45 209-253 86-130 (514)
230 smart00338 BRLZ basic region l 60.4 34 0.00074 26.7 6.1 36 231-266 23-58 (65)
231 KOG1962 B-cell receptor-associ 59.9 1.2E+02 0.0026 30.1 11.0 32 227-258 165-196 (216)
232 PF05700 BCAS2: Breast carcino 59.3 1.8E+02 0.0038 28.3 17.0 19 236-254 198-216 (221)
233 PF04949 Transcrip_act: Transc 59.0 1.7E+02 0.0036 27.9 16.3 44 154-197 56-103 (159)
234 PF14988 DUF4515: Domain of un 58.5 1.8E+02 0.004 28.2 23.2 93 96-193 15-107 (206)
235 COG1842 PspA Phage shock prote 58.3 2E+02 0.0043 28.5 14.4 50 121-171 27-76 (225)
236 KOG1899 LAR transmembrane tyro 58.1 3.5E+02 0.0076 31.3 19.5 65 150-217 107-171 (861)
237 PLN02939 transferase, transfer 57.5 4.1E+02 0.0089 31.9 20.8 154 97-257 224-399 (977)
238 PF06005 DUF904: Protein of un 57.5 1E+02 0.0023 25.4 8.6 31 233-263 17-47 (72)
239 PF04849 HAP1_N: HAP1 N-termin 57.1 2.5E+02 0.0054 29.3 18.8 95 97-201 158-257 (306)
240 PF05529 Bap31: B-cell recepto 56.9 1.2E+02 0.0026 28.4 10.1 22 235-256 169-190 (192)
241 PF02994 Transposase_22: L1 tr 56.6 28 0.00061 36.4 6.4 48 221-271 141-188 (370)
242 PRK10698 phage shock protein P 56.1 2.1E+02 0.0044 28.0 19.3 91 176-270 57-149 (222)
243 PF10481 CENP-F_N: Cenp-F N-te 56.1 2.6E+02 0.0056 29.1 17.0 81 228-308 89-178 (307)
244 PF05761 5_nucleotid: 5' nucle 55.9 24 0.00052 38.1 6.0 67 130-197 319-388 (448)
245 TIGR02977 phageshock_pspA phag 55.9 2E+02 0.0043 27.8 19.3 37 234-270 113-149 (219)
246 KOG4196 bZIP transcription fac 55.8 1.3E+02 0.0027 28.1 9.6 75 187-268 34-115 (135)
247 PRK12705 hypothetical protein; 55.6 3.3E+02 0.0071 30.2 14.6 22 183-204 57-78 (508)
248 smart00340 HALZ homeobox assoc 55.4 24 0.00053 26.9 4.1 30 147-176 5-34 (44)
249 KOG0962 DNA repair protein RAD 55.3 5E+02 0.011 32.2 21.7 98 101-201 187-284 (1294)
250 PF10805 DUF2730: Protein of u 54.6 1.5E+02 0.0031 25.9 11.0 58 99-160 35-92 (106)
251 PF05010 TACC: Transforming ac 54.5 2.2E+02 0.0048 27.9 23.0 28 99-126 23-50 (207)
252 PF14077 WD40_alt: Alternative 54.2 12 0.00027 28.9 2.5 20 235-254 19-38 (48)
253 PF15066 CAGE1: Cancer-associa 53.9 3.5E+02 0.0076 30.1 21.8 95 132-231 344-453 (527)
254 PF13514 AAA_27: AAA domain 53.7 4.6E+02 0.0099 31.3 28.8 85 236-327 891-975 (1111)
255 PTZ00491 major vault protein; 53.5 4.4E+02 0.0095 31.2 15.5 20 26-45 570-589 (850)
256 PRK13922 rod shape-determining 53.4 40 0.00086 33.2 6.6 37 156-192 71-107 (276)
257 PTZ00464 SNF-7-like protein; P 53.1 2.3E+02 0.005 27.8 18.2 45 79-127 2-46 (211)
258 PRK00106 hypothetical protein; 52.3 3.8E+02 0.0082 30.0 22.1 10 382-391 379-388 (535)
259 PRK00295 hypothetical protein; 51.6 1E+02 0.0022 25.0 7.6 37 133-169 5-41 (68)
260 PRK11519 tyrosine kinase; Prov 51.5 4.1E+02 0.0089 30.1 18.8 129 132-270 266-399 (719)
261 TIGR00219 mreC rod shape-deter 51.4 43 0.00093 33.8 6.6 38 155-192 67-105 (283)
262 PF00170 bZIP_1: bZIP transcri 51.1 57 0.0012 25.4 5.9 35 231-265 23-57 (64)
263 PF04102 SlyX: SlyX; InterPro 50.9 71 0.0015 25.7 6.6 35 133-167 4-38 (69)
264 PF10473 CENP-F_leu_zip: Leuci 50.6 2.1E+02 0.0046 26.5 18.5 71 98-174 9-79 (140)
265 PRK13169 DNA replication intia 49.7 86 0.0019 28.0 7.4 47 134-180 9-55 (110)
266 KOG1937 Uncharacterized conser 49.7 4.1E+02 0.0088 29.6 22.5 61 233-299 454-516 (521)
267 PRK02793 phi X174 lysis protei 49.4 98 0.0021 25.4 7.2 38 132-169 7-44 (72)
268 PRK04406 hypothetical protein; 49.3 94 0.002 25.8 7.2 36 132-167 10-45 (75)
269 TIGR02977 phageshock_pspA phag 49.1 2.5E+02 0.0055 27.0 19.5 109 97-216 36-149 (219)
270 KOG3564 GTPase-activating prot 48.9 1.5E+02 0.0033 33.0 10.5 31 97-127 26-56 (604)
271 PF13870 DUF4201: Domain of un 48.7 2.2E+02 0.0048 26.3 22.1 156 97-256 4-174 (177)
272 PRK00409 recombination and DNA 48.6 4.9E+02 0.011 30.2 15.8 14 383-396 746-759 (782)
273 KOG4005 Transcription factor X 48.6 2.3E+02 0.005 29.0 11.0 56 195-261 62-117 (292)
274 PF10168 Nup88: Nuclear pore c 48.1 4.9E+02 0.011 30.0 19.9 42 130-171 576-617 (717)
275 PF12128 DUF3584: Protein of u 47.8 5.9E+02 0.013 30.9 31.3 39 236-274 422-461 (1201)
276 PF05266 DUF724: Protein of un 47.7 2.7E+02 0.0058 26.9 13.2 15 99-113 69-83 (190)
277 KOG1853 LIS1-interacting prote 47.4 3.5E+02 0.0075 28.1 20.8 153 110-294 24-180 (333)
278 TIGR01010 BexC_CtrB_KpsE polys 47.4 3.3E+02 0.0071 27.8 12.6 134 128-270 165-307 (362)
279 PF14257 DUF4349: Domain of un 47.3 98 0.0021 30.3 8.2 50 149-198 134-189 (262)
280 PRK00846 hypothetical protein; 47.1 1.1E+02 0.0025 25.7 7.4 39 132-170 12-50 (77)
281 PF07716 bZIP_2: Basic region 47.0 52 0.0011 25.0 5.0 31 231-261 22-52 (54)
282 PF15330 SIT: SHP2-interacting 46.7 16 0.00035 32.2 2.5 28 16-43 4-31 (107)
283 PF00769 ERM: Ezrin/radixin/mo 46.7 3E+02 0.0066 27.3 16.2 33 134-166 34-66 (246)
284 PF00170 bZIP_1: bZIP transcri 46.5 82 0.0018 24.5 6.2 28 146-173 25-52 (64)
285 KOG2991 Splicing regulator [RN 46.2 3.6E+02 0.0079 28.0 16.8 26 236-261 266-291 (330)
286 PRK02119 hypothetical protein; 46.0 1.4E+02 0.003 24.6 7.6 36 132-167 8-43 (73)
287 KOG0964 Structural maintenance 45.6 6.4E+02 0.014 30.7 21.4 143 126-271 671-822 (1200)
288 PF10205 KLRAQ: Predicted coil 45.6 2.2E+02 0.0048 25.3 10.6 41 227-267 33-73 (102)
289 PRK05431 seryl-tRNA synthetase 45.6 1.3E+02 0.0028 32.1 9.3 46 150-195 38-83 (425)
290 PF04977 DivIC: Septum formati 45.3 78 0.0017 24.8 6.0 27 147-173 24-50 (80)
291 PF03112 DUF244: Uncharacteriz 45.2 1.9E+02 0.004 27.6 9.1 73 101-173 23-103 (158)
292 PF10212 TTKRSYEDQ: Predicted 45.2 4.5E+02 0.0097 29.5 13.4 43 175-217 459-501 (518)
293 PF02403 Seryl_tRNA_N: Seryl-t 44.7 1.1E+02 0.0025 25.8 7.3 24 152-175 41-64 (108)
294 PF05384 DegS: Sensor protein 44.3 2.8E+02 0.0061 26.2 17.9 57 242-300 99-155 (159)
295 PRK04325 hypothetical protein; 44.3 1.3E+02 0.0028 24.8 7.2 35 133-167 9-43 (74)
296 PF09744 Jnk-SapK_ap_N: JNK_SA 44.1 2.8E+02 0.0061 26.1 15.1 37 238-274 86-122 (158)
297 PF13863 DUF4200: Domain of un 44.1 2.1E+02 0.0045 24.6 14.9 35 236-270 76-110 (126)
298 PF13514 AAA_27: AAA domain 43.8 6.4E+02 0.014 30.1 26.9 44 284-327 345-388 (1111)
299 TIGR01730 RND_mfp RND family e 43.5 1.4E+02 0.0029 29.0 8.5 37 156-192 80-116 (322)
300 PF15254 CCDC14: Coiled-coil d 42.8 6.4E+02 0.014 29.9 19.8 150 99-264 394-559 (861)
301 COG0497 RecN ATPase involved i 42.6 5.5E+02 0.012 29.0 22.1 28 290-323 358-385 (557)
302 PF12709 Kinetocho_Slk19: Cent 42.5 2.3E+02 0.0049 24.6 10.6 30 239-268 47-76 (87)
303 PRK00736 hypothetical protein; 41.8 1.6E+02 0.0034 23.9 7.3 31 134-164 6-36 (68)
304 PRK15178 Vi polysaccharide exp 41.6 4.6E+02 0.0099 28.6 12.7 55 98-152 241-305 (434)
305 smart00338 BRLZ basic region l 41.6 88 0.0019 24.4 5.7 27 146-172 25-51 (65)
306 TIGR01010 BexC_CtrB_KpsE polys 41.5 4E+02 0.0087 27.2 16.9 19 282-300 289-307 (362)
307 PF10267 Tmemb_cc2: Predicted 41.4 4.9E+02 0.011 28.1 17.5 178 19-216 105-318 (395)
308 TIGR02209 ftsL_broad cell divi 41.0 1.1E+02 0.0024 24.6 6.3 36 140-175 24-59 (85)
309 TIGR02338 gimC_beta prefoldin, 40.9 2.4E+02 0.0051 24.4 11.4 38 147-184 10-47 (110)
310 PF09731 Mitofilin: Mitochondr 40.8 5.2E+02 0.011 28.2 18.9 162 122-308 212-383 (582)
311 PF04156 IncA: IncA protein; 40.7 2.9E+02 0.0064 25.4 15.5 61 101-167 90-150 (191)
312 PF11932 DUF3450: Protein of u 40.7 3.6E+02 0.0077 26.4 14.7 62 100-174 22-83 (251)
313 TIGR00414 serS seryl-tRNA synt 40.5 1.7E+02 0.0037 31.1 9.3 47 151-197 41-88 (418)
314 PF11180 DUF2968: Protein of u 40.4 3.7E+02 0.008 26.4 14.0 18 200-217 165-182 (192)
315 PF09738 DUF2051: Double stran 40.1 4.5E+02 0.0097 27.3 15.1 72 136-210 101-172 (302)
316 TIGR03017 EpsF chain length de 39.8 4.5E+02 0.0098 27.3 20.0 63 132-194 170-238 (444)
317 KOG0999 Microtubule-associated 39.7 6.4E+02 0.014 29.0 24.0 29 135-163 52-80 (772)
318 cd00632 Prefoldin_beta Prefold 39.5 2.4E+02 0.0052 24.0 11.3 36 148-183 7-42 (105)
319 PF03961 DUF342: Protein of un 39.3 1.5E+02 0.0033 31.5 8.8 76 95-170 330-405 (451)
320 PRK13182 racA polar chromosome 38.7 2.5E+02 0.0054 26.8 9.2 55 144-198 89-145 (175)
321 PF13874 Nup54: Nucleoporin co 38.6 1.8E+02 0.004 26.2 8.0 32 239-270 70-101 (141)
322 PF12329 TMF_DNA_bd: TATA elem 38.3 1.7E+02 0.0036 24.1 7.0 31 239-269 31-61 (74)
323 PRK10869 recombination and rep 38.3 5.9E+02 0.013 28.2 21.0 47 223-269 323-369 (553)
324 KOG4001 Axonemal dynein light 38.2 68 0.0015 32.0 5.5 60 238-297 189-254 (259)
325 COG1340 Uncharacterized archae 38.0 4.9E+02 0.011 27.1 22.3 52 151-202 135-189 (294)
326 PF08172 CASP_C: CASP C termin 37.8 71 0.0015 32.0 5.7 34 136-169 96-129 (248)
327 PF07058 Myosin_HC-like: Myosi 37.8 3.4E+02 0.0073 28.7 10.5 32 241-272 59-90 (351)
328 TIGR03752 conj_TIGR03752 integ 37.6 3.9E+02 0.0086 29.5 11.5 21 16-36 5-25 (472)
329 KOG4360 Uncharacterized coiled 37.3 6.6E+02 0.014 28.4 16.6 86 101-190 161-252 (596)
330 PF08537 NBP1: Fungal Nap bind 37.3 4.2E+02 0.0092 28.0 11.2 72 114-192 134-217 (323)
331 TIGR01843 type_I_hlyD type I s 37.1 4.5E+02 0.0099 26.5 22.7 27 100-126 75-101 (423)
332 PF06637 PV-1: PV-1 protein (P 37.0 5.9E+02 0.013 27.8 14.7 24 12-35 25-48 (442)
333 PF09006 Surfac_D-trimer: Lung 36.9 85 0.0019 24.3 4.7 29 149-177 1-29 (46)
334 KOG1103 Predicted coiled-coil 36.6 5.9E+02 0.013 27.7 18.6 86 96-186 83-171 (561)
335 KOG0244 Kinesin-like protein [ 35.9 6.5E+02 0.014 30.2 13.4 59 152-210 514-573 (913)
336 PF12126 DUF3583: Protein of u 35.8 5.5E+02 0.012 27.1 13.2 137 157-319 6-152 (324)
337 TIGR01069 mutS2 MutS2 family p 35.8 6.1E+02 0.013 29.4 13.3 41 152-192 513-553 (771)
338 KOG0994 Extracellular matrix g 35.5 9.9E+02 0.021 30.0 20.0 16 246-261 1687-1702(1758)
339 PRK00846 hypothetical protein; 35.5 2.2E+02 0.0047 24.1 7.3 48 222-269 11-62 (77)
340 TIGR02231 conserved hypothetic 35.4 4E+02 0.0088 28.8 11.3 8 135-142 73-80 (525)
341 PF14257 DUF4349: Domain of un 35.2 2.5E+02 0.0053 27.5 8.9 56 94-153 127-182 (262)
342 PF05278 PEARLI-4: Arabidopsis 35.1 5.2E+02 0.011 26.6 13.4 15 99-113 126-140 (269)
343 KOG2264 Exostosin EXT1L [Signa 35.0 2.3E+02 0.0051 32.4 9.4 19 144-162 104-122 (907)
344 PF10046 BLOC1_2: Biogenesis o 34.7 2.9E+02 0.0063 23.6 12.4 13 178-190 14-26 (99)
345 PF11932 DUF3450: Protein of u 34.7 4.5E+02 0.0096 25.7 16.5 58 135-192 58-116 (251)
346 PF02183 HALZ: Homeobox associ 34.5 1.4E+02 0.0031 22.5 5.6 34 139-172 4-37 (45)
347 TIGR03545 conserved hypothetic 34.4 5.8E+02 0.013 28.6 12.5 17 133-149 164-180 (555)
348 KOG4796 RNA polymerase II elon 34.3 3.2E+02 0.0068 30.9 10.2 89 163-255 507-595 (604)
349 PRK11281 hypothetical protein; 33.8 9.7E+02 0.021 29.3 24.5 29 98-126 79-107 (1113)
350 KOG4715 SWI/SNF-related matrix 33.6 4.8E+02 0.01 27.9 10.9 74 98-187 220-295 (410)
351 KOG3348 BolA (bacterial stress 33.6 33 0.00071 29.6 2.2 20 310-329 51-70 (85)
352 PF12709 Kinetocho_Slk19: Cent 33.5 1.4E+02 0.003 25.9 6.0 50 210-262 34-84 (87)
353 PRK14011 prefoldin subunit alp 33.4 2.1E+02 0.0045 26.5 7.6 85 99-183 10-124 (144)
354 PF10146 zf-C4H2: Zinc finger- 33.4 5E+02 0.011 25.9 15.2 12 238-249 92-103 (230)
355 PRK10929 putative mechanosensi 33.4 9.8E+02 0.021 29.3 20.9 20 287-306 335-354 (1109)
356 PF12761 End3: Actin cytoskele 33.2 2.2E+02 0.0048 27.9 8.0 21 197-217 161-181 (195)
357 PF07544 Med9: RNA polymerase 33.1 1.1E+02 0.0024 25.5 5.3 61 93-156 22-82 (83)
358 PF06632 XRCC4: DNA double-str 33.0 6.1E+02 0.013 26.8 11.8 23 151-173 141-163 (342)
359 PRK15136 multidrug efflux syst 32.7 5.9E+02 0.013 26.5 15.3 45 148-192 128-172 (390)
360 PF07227 DUF1423: Protein of u 32.5 6E+02 0.013 28.0 11.8 38 133-170 350-387 (446)
361 KOG4005 Transcription factor X 32.3 4.2E+02 0.0092 27.2 10.0 31 292-322 202-233 (292)
362 KOG0288 WD40 repeat protein Ti 32.3 7.2E+02 0.016 27.4 17.6 65 104-174 4-68 (459)
363 PF04012 PspA_IM30: PspA/IM30 32.1 4.4E+02 0.0096 24.9 19.8 95 97-197 35-138 (221)
364 PF06156 DUF972: Protein of un 32.1 3E+02 0.0066 24.3 8.1 34 236-269 24-57 (107)
365 COG4372 Uncharacterized protei 32.0 7.2E+02 0.016 27.3 21.3 35 135-169 146-180 (499)
366 PF07716 bZIP_2: Basic region 31.9 1.2E+02 0.0027 23.0 5.0 28 146-173 24-51 (54)
367 PF06160 EzrA: Septation ring 31.9 7.4E+02 0.016 27.4 19.5 59 155-213 272-330 (560)
368 PF05356 Phage_Coat_B: Phage C 31.9 33 0.0007 29.2 1.9 18 19-36 64-81 (83)
369 TIGR03185 DNA_S_dndD DNA sulfu 31.5 7.8E+02 0.017 27.5 29.0 27 241-267 391-417 (650)
370 PF05529 Bap31: B-cell recepto 31.3 4.4E+02 0.0095 24.6 10.0 13 20-32 50-62 (192)
371 PF15397 DUF4618: Domain of un 31.3 5.8E+02 0.013 26.0 20.3 23 236-258 202-224 (258)
372 PRK14892 putative transcriptio 30.9 30 0.00066 30.3 1.6 14 309-322 65-78 (99)
373 KOG2391 Vacuolar sorting prote 30.6 3.6E+02 0.0077 28.9 9.5 37 237-273 249-285 (365)
374 KOG2010 Double stranded RNA bi 30.6 7E+02 0.015 26.8 12.2 28 89-116 101-129 (405)
375 KOG4438 Centromere-associated 30.5 7.7E+02 0.017 27.2 21.0 93 152-248 221-314 (446)
376 COG5509 Uncharacterized small 30.3 76 0.0016 26.0 3.6 25 149-173 27-51 (65)
377 PF10226 DUF2216: Uncharacteri 30.1 5.5E+02 0.012 25.4 13.2 39 131-169 39-77 (195)
378 KOG4436 Predicted GTPase activ 30.0 7.6E+02 0.017 29.5 12.6 63 243-308 857-923 (948)
379 cd00928 Cyt_c_Oxidase_VIIa Cyt 29.8 30 0.00064 27.5 1.3 25 9-34 15-47 (55)
380 COG4985 ABC-type phosphate tra 29.8 5.6E+02 0.012 26.3 10.3 83 173-264 159-244 (289)
381 TIGR01069 mutS2 MutS2 family p 29.6 9.4E+02 0.02 27.9 15.9 15 383-397 735-749 (771)
382 PLN02678 seryl-tRNA synthetase 29.6 3.2E+02 0.007 29.7 9.3 11 316-326 263-273 (448)
383 PF09006 Surfac_D-trimer: Lung 29.5 1.1E+02 0.0024 23.7 4.2 27 101-127 1-27 (46)
384 PF06698 DUF1192: Protein of u 29.4 1.3E+02 0.0028 24.3 4.8 30 148-177 22-51 (59)
385 PF06160 EzrA: Septation ring 29.3 8.2E+02 0.018 27.1 26.8 46 224-269 289-334 (560)
386 PRK03947 prefoldin subunit alp 29.2 4.1E+02 0.0088 23.5 12.2 31 100-130 14-44 (140)
387 COG2900 SlyX Uncharacterized p 29.1 2.6E+02 0.0055 23.6 6.6 45 226-270 10-58 (72)
388 PF04420 CHD5: CHD5-like prote 28.6 1.7E+02 0.0037 27.2 6.2 52 145-196 38-91 (161)
389 PF04912 Dynamitin: Dynamitin 28.5 7E+02 0.015 26.1 17.1 105 164-274 249-362 (388)
390 PF06810 Phage_GP20: Phage min 28.5 4.9E+02 0.011 24.2 9.8 14 288-301 119-132 (155)
391 PF06810 Phage_GP20: Phage min 28.2 4.9E+02 0.011 24.2 11.0 15 236-250 118-132 (155)
392 KOG4302 Microtubule-associated 28.1 9.8E+02 0.021 27.7 20.5 80 235-314 234-319 (660)
393 KOG4603 TBP-1 interacting prot 28.1 2E+02 0.0044 28.1 6.7 58 98-180 85-142 (201)
394 TIGR02894 DNA_bind_RsfA transc 28.1 5.4E+02 0.012 24.7 12.2 32 237-268 107-138 (161)
395 PF14992 TMCO5: TMCO5 family 28.0 6E+02 0.013 26.3 10.4 132 190-329 9-160 (280)
396 TIGR00634 recN DNA repair prot 27.7 8.5E+02 0.018 26.8 20.0 52 125-176 153-204 (563)
397 PF07246 Phlebovirus_NSM: Phle 27.7 4.9E+02 0.011 26.8 9.6 11 28-38 40-52 (264)
398 PRK00888 ftsB cell division pr 27.6 2.5E+02 0.0055 24.5 6.8 21 152-172 39-59 (105)
399 KOG1962 B-cell receptor-associ 27.6 6.3E+02 0.014 25.2 11.8 10 29-38 58-67 (216)
400 PRK15422 septal ring assembly 27.5 4E+02 0.0086 22.9 7.9 33 241-273 39-71 (79)
401 PF14193 DUF4315: Domain of un 27.5 1.4E+02 0.0031 25.4 5.0 25 173-197 3-27 (83)
402 PF12808 Mto2_bdg: Micro-tubul 27.2 1.4E+02 0.0031 23.5 4.6 20 152-171 27-46 (52)
403 PRK00888 ftsB cell division pr 27.2 1.3E+02 0.0028 26.2 4.9 14 287-300 50-63 (105)
404 PF07989 Microtub_assoc: Micro 27.1 2.4E+02 0.0051 23.4 6.2 29 236-264 2-30 (75)
405 PRK10698 phage shock protein P 27.0 6E+02 0.013 24.8 19.4 30 98-127 37-66 (222)
406 PF05308 Mito_fiss_reg: Mitoch 27.0 53 0.0011 33.0 2.8 25 154-178 122-146 (253)
407 PF07246 Phlebovirus_NSM: Phle 26.9 6.9E+02 0.015 25.7 10.6 41 174-214 201-241 (264)
408 cd00632 Prefoldin_beta Prefold 26.7 4E+02 0.0087 22.7 10.2 90 99-191 6-104 (105)
409 PF01166 TSC22: TSC-22/dip/bun 26.7 67 0.0014 26.0 2.7 29 99-127 14-42 (59)
410 PF08826 DMPK_coil: DMPK coile 26.6 3.5E+02 0.0075 21.9 8.2 30 166-195 6-35 (61)
411 COG4985 ABC-type phosphate tra 26.4 7.3E+02 0.016 25.5 10.9 46 106-167 161-206 (289)
412 KOG2129 Uncharacterized conser 26.0 9.4E+02 0.02 26.7 17.4 143 104-254 134-298 (552)
413 COG1730 GIM5 Predicted prefold 26.0 3.4E+02 0.0073 25.4 7.6 45 148-192 7-51 (145)
414 KOG0837 Transcriptional activa 25.9 2.7E+02 0.0058 28.7 7.5 34 231-264 224-257 (279)
415 PRK10361 DNA recombination pro 25.9 9.4E+02 0.02 26.7 22.8 61 283-343 145-218 (475)
416 PF05377 FlaC_arch: Flagella a 25.9 3.1E+02 0.0067 21.9 6.3 24 150-173 10-33 (55)
417 KOG4807 F-actin binding protei 25.8 9.3E+02 0.02 26.6 17.9 79 240-326 455-539 (593)
418 KOG3214 Uncharacterized Zn rib 25.7 40 0.00086 30.1 1.5 11 309-319 70-80 (109)
419 smart00502 BBC B-Box C-termina 25.7 3.8E+02 0.0082 22.1 16.2 57 166-222 5-62 (127)
420 PRK14161 heat shock protein Gr 25.6 3.4E+02 0.0074 26.0 7.8 48 150-200 15-62 (178)
421 PF07851 TMPIT: TMPIT-like pro 25.5 8.2E+02 0.018 25.9 11.7 36 97-132 2-37 (330)
422 COG3879 Uncharacterized protei 25.5 4.2E+02 0.0092 26.9 8.7 22 15-36 18-39 (247)
423 PHA03099 epidermal growth fact 25.5 39 0.00085 31.3 1.4 28 13-40 103-130 (139)
424 KOG4797 Transcriptional regula 25.4 98 0.0021 28.1 3.8 26 98-123 66-91 (123)
425 PF09969 DUF2203: Uncharacteri 25.2 5E+02 0.011 23.3 8.5 35 125-163 2-36 (120)
426 PF01486 K-box: K-box region; 25.0 4.2E+02 0.0091 22.3 10.9 27 238-264 72-98 (100)
427 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.0 4.9E+02 0.011 23.1 18.5 36 160-195 48-83 (132)
428 PF14282 FlxA: FlxA-like prote 24.9 4E+02 0.0088 23.1 7.5 39 229-267 46-84 (106)
429 TIGR02894 DNA_bind_RsfA transc 24.8 5E+02 0.011 24.9 8.6 21 146-166 110-130 (161)
430 KOG4571 Activating transcripti 24.8 4E+02 0.0086 27.8 8.5 20 13-32 35-54 (294)
431 KOG3564 GTPase-activating prot 24.8 5.7E+02 0.012 28.8 10.1 54 148-204 29-82 (604)
432 COG1842 PspA Phage shock prote 24.8 6.9E+02 0.015 24.8 19.5 33 150-182 27-59 (225)
433 KOG0962 DNA repair protein RAD 24.7 1.5E+03 0.032 28.5 25.5 61 101-161 787-847 (1294)
434 PRK10559 p-hydroxybenzoic acid 24.7 6.4E+02 0.014 25.4 10.0 17 20-36 12-28 (310)
435 PF10805 DUF2730: Protein of u 24.6 4.5E+02 0.0099 22.8 7.8 24 174-197 68-91 (106)
436 PLN02320 seryl-tRNA synthetase 24.6 3.8E+02 0.0082 29.8 8.9 21 152-172 105-125 (502)
437 PF12958 DUF3847: Protein of u 24.5 3E+02 0.0066 23.7 6.5 33 166-198 3-35 (86)
438 PF07139 DUF1387: Protein of u 24.3 4.6E+02 0.0099 27.5 8.9 54 101-160 184-241 (302)
439 PF12711 Kinesin-relat_1: Kine 24.2 4.7E+02 0.01 22.6 8.0 25 146-170 43-67 (86)
440 PF11629 Mst1_SARAH: C termina 24.2 1.3E+02 0.0027 23.7 3.7 25 226-250 10-35 (49)
441 PF11559 ADIP: Afadin- and alp 24.1 5.3E+02 0.011 23.1 15.7 21 179-199 88-108 (151)
442 TIGR03382 GC_trans_RRR Myxococ 24.0 75 0.0016 21.8 2.3 20 20-39 7-26 (27)
443 PF03961 DUF342: Protein of un 23.8 5.6E+02 0.012 27.3 9.8 20 102-121 330-349 (451)
444 KOG3433 Protein involved in me 23.7 7.2E+02 0.016 24.6 12.5 120 160-298 42-175 (203)
445 PF03980 Nnf1: Nnf1 ; InterPr 23.7 1.4E+02 0.003 25.5 4.4 30 144-173 77-106 (109)
446 PLN02939 transferase, transfer 23.6 1.4E+03 0.03 27.8 20.9 16 109-124 166-181 (977)
447 KOG0993 Rab5 GTPase effector R 23.6 1E+03 0.022 26.4 11.9 76 92-167 92-168 (542)
448 PF07851 TMPIT: TMPIT-like pro 23.6 8.9E+02 0.019 25.6 11.5 32 152-183 2-33 (330)
449 PF05600 DUF773: Protein of un 23.5 8.3E+02 0.018 27.0 11.2 45 101-145 357-409 (507)
450 PF10224 DUF2205: Predicted co 23.5 3.2E+02 0.0069 23.2 6.4 41 135-175 25-65 (80)
451 PF11947 DUF3464: Protein of u 23.5 62 0.0014 30.5 2.4 32 9-40 59-90 (153)
452 PF14073 Cep57_CLD: Centrosome 23.2 7E+02 0.015 24.2 18.6 89 173-265 59-151 (178)
453 TIGR02231 conserved hypothetic 23.1 9.8E+02 0.021 25.9 12.6 23 97-119 69-91 (525)
454 PRK03598 putative efflux pump 23.1 7.6E+02 0.017 24.7 11.6 45 149-193 116-160 (331)
455 PF00804 Syntaxin: Syntaxin; 22.7 4E+02 0.0087 21.3 11.1 33 181-213 41-73 (103)
456 PF05129 Elf1: Transcription e 22.6 55 0.0012 27.4 1.7 11 309-319 69-79 (81)
457 PF12777 MT: Microtubule-bindi 22.4 8.6E+02 0.019 25.0 12.0 30 128-157 10-39 (344)
458 PRK14872 rod shape-determining 22.3 1.9E+02 0.0042 30.4 5.9 21 284-304 182-202 (337)
459 KOG4403 Cell surface glycoprot 22.3 1.1E+03 0.024 26.3 16.4 27 228-254 336-362 (575)
460 PRK10803 tol-pal system protei 22.1 7.3E+02 0.016 24.8 9.7 22 136-157 57-78 (263)
461 PF04977 DivIC: Septum formati 21.9 3E+02 0.0065 21.4 5.7 18 149-166 33-50 (80)
462 PRK15178 Vi polysaccharide exp 21.9 8.9E+02 0.019 26.5 10.9 22 13-37 82-103 (434)
463 KOG0964 Structural maintenance 21.7 1.5E+03 0.034 27.7 24.7 44 226-269 424-467 (1200)
464 PF09738 DUF2051: Double stran 21.6 3.9E+02 0.0084 27.7 7.8 49 130-178 123-171 (302)
465 TIGR02971 heterocyst_DevB ABC 21.5 8E+02 0.017 24.3 16.3 60 136-195 93-152 (327)
466 PF02609 Exonuc_VII_S: Exonucl 21.3 3.7E+02 0.0081 20.4 6.5 48 149-196 5-52 (53)
467 TIGR02449 conserved hypothetic 21.3 3.2E+02 0.007 22.4 5.8 37 235-271 15-51 (65)
468 PF09787 Golgin_A5: Golgin sub 21.2 1.1E+03 0.024 25.8 27.5 29 241-269 274-302 (511)
469 PF14931 IFT20: Intraflagellar 21.2 6.1E+02 0.013 22.9 8.6 58 102-161 51-108 (120)
470 PRK05431 seryl-tRNA synthetase 21.2 6.1E+02 0.013 27.1 9.5 10 316-325 258-267 (425)
471 PF07412 Geminin: Geminin; In 20.8 2.2E+02 0.0048 28.1 5.6 41 152-192 130-170 (200)
472 PF01166 TSC22: TSC-22/dip/bun 20.6 1.3E+02 0.0027 24.5 3.2 20 148-167 15-34 (59)
473 COG2900 SlyX Uncharacterized p 20.6 5.2E+02 0.011 21.8 7.2 26 132-157 7-32 (72)
474 PF05377 FlaC_arch: Flagella a 20.4 3.6E+02 0.0079 21.6 5.7 32 137-168 4-35 (55)
475 COG4372 Uncharacterized protei 20.3 1.2E+03 0.026 25.8 27.7 17 97-113 79-95 (499)
476 PF15030 DUF4527: Protein of u 20.1 9.7E+02 0.021 24.7 10.6 45 151-195 13-57 (277)
477 PF14916 CCDC92: Coiled-coil d 20.1 72 0.0016 25.8 1.8 24 233-256 20-43 (60)
478 KOG4378 Nuclear protein COP1 [ 20.0 2.2E+02 0.0048 32.1 5.9 31 161-191 640-670 (673)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.42 E-value=0.29 Score=55.17 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
..++..|+..+..++..-..++.++.
T Consensus 676 ~~e~~~l~~~~~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 676 RREIEELEEKIEELEEKIAELEKALA 701 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444433
No 2
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.39 E-value=0.013 Score=65.15 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=85.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDV 228 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e 228 (437)
+.+++..|..|++|.++|..-+..--.+.+.+..+=.|......+.+..-...+..+..+..|.+.+++.--++.. |--
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~-Dlq 568 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS-DLQ 568 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh-hHH
Confidence 6677778888888888888887777777777766666666666666666667777777888888888776544432 111
Q ss_pred HHHhhH------HHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHhHHHhhhhc
Q 039797 229 LEEKSN------AIQKLENELKELHSVI-----------DQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 229 ~E~Kl~------~l~~LE~Ev~ELrr~n-----------k~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
.+.+++ .-..|-..|.+||.+. ..+-+|+++|-.||++||.+.
T Consensus 569 k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~ 628 (961)
T KOG4673|consen 569 KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRC 628 (961)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 2335667777888665 567889999999999999874
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.38 E-value=0.22 Score=52.63 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
+.+++..+.+.+.....+..++..|...++..+.... -..++..+|..++..++.++.....|.
T Consensus 339 i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~---------~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 339 LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV---------DNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433200 011234455556666666655555554
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.24 E-value=0.48 Score=55.60 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHHHH-------hHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDL-KEQESLLMELRNM-------IFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L-KEQea~v~ELe~~-------L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
.++..++..+..+.+.-..++.++-++..- .+-+..+..++.. +.....+.-.+..++..++.+...++..+
T Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444321 2222223333333 33333333333445666666666666555
Q ss_pred HHHHHH
Q 039797 171 VLYLKV 176 (437)
Q Consensus 171 ~e~~~v 176 (437)
.....-
T Consensus 312 ~~~~~~ 317 (1163)
T COG1196 312 EELENE 317 (1163)
T ss_pred HHHHHH
Confidence 555444
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.36 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 241 NELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
..+.+|.+.+++|+.+..++...+
T Consensus 349 ~~~~~le~~~~~l~~~~~~l~~~~ 372 (880)
T PRK02224 349 EDADDLEERAEELREEAAELESEL 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=97.16 E-value=0.24 Score=55.33 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 103 NLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQ 182 (437)
Q Consensus 103 ~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ 182 (437)
.++...+.++.+-..|+..+-.+. +.+..+..++..+.....++..+..++..++.+-..++.++..+.....+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~l~---~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~ 242 (880)
T PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTE---NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554433 33445677777777777788888888888887777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhhhHHhH
Q 039797 183 WKSESGLLKRKVKKLVR---KTKELSDIIREQNLKIESADA 220 (437)
Q Consensus 183 ar~ki~~Lqrk~~~~a~---q~K~q~~~lkqqv~~l~~~E~ 220 (437)
++.++..+..+++..-. .....+..+++++..++....
T Consensus 243 l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766554432 333444455555555544433
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.10 E-value=0.22 Score=55.81 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQFARY 125 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy 125 (437)
.++.||..||.-+...+..|..|+.++--|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l 451 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSL 451 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 457899999999999999999988886533
No 8
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.09 E-value=0.045 Score=49.87 Aligned_cols=118 Identities=17% Similarity=0.260 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQ 211 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqq 211 (437)
++.+..|+.+...+..+|.-|..++..|+.+-..++.++.+......+-+.....+.-|+++|+.+
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L-------------- 85 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL-------------- 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH--------------
Confidence 345677777888888889999999999999999999998888888888877777777787777655
Q ss_pred HHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 212 NLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 212 v~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
|.++-..+.-+..-...+++..+.+.++-|..+.|..+...+-.|++..+.+
T Consensus 86 -------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 86 -------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333333333344566778888888888888888888887777665543
No 9
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.08 E-value=0.19 Score=55.01 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=58.8
Q ss_pred hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH------------------HHHHHHHHH----HH
Q 039797 129 KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK------------------VLDQLQQWK----SE 186 (437)
Q Consensus 129 KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~------------------v~~ELe~ar----~k 186 (437)
.++...+-.++.++..-+..++.|...+.-|-.||.||.+++....+ +.++|+.++ .+
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~e 223 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQE 223 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 34455566666666666666666666666666777777776666554 455566666 66
Q ss_pred HHHHHHHHHHHH-HhhHHHH-HHHHHHHHhhhHHhHHHh-hhhhHHHH
Q 039797 187 SGLLKRKVKKLV-RKTKELS-DIIREQNLKIESADAELL-RNCDVLEE 231 (437)
Q Consensus 187 i~~Lqrk~~~~a-~q~K~q~-~~lkqqv~~l~~~E~E~~-~~~~e~E~ 231 (437)
|.+++++...+. ..++... .-|...+..|.++-+..+ .+..++|.
T Consensus 224 I~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~ 271 (546)
T KOG0977|consen 224 IEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES 271 (546)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777777777665 4443332 123444444444433332 33444444
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.00 E-value=0.93 Score=51.15 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARY 125 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy 125 (437)
.++..|..-+..|+..-..++.++-+.
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.98 E-value=0.73 Score=54.12 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.+.++...+.....+++.+...+..++.+.+.++..+..+
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (1163)
T COG1196 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEEL 742 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544444444433
No 12
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.19 Score=58.84 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH--------
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL-------- 169 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~-------- 169 (437)
+.++.......+.++++...++.++-++ ...+++|+++|..-.+++..+...|+-|+..-.-+++.
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~l------r~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKL------RERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence 3445555555555555555555554444 23567777777666666666555444444433333322
Q ss_pred ------HHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhh
Q 039797 170 ------VVLYLKVLDQLQQW-----K-SESGLLKRKVKKLVR----KTKELSDIIREQNLKIESADAELLRNCDVLEEKS 233 (437)
Q Consensus 170 ------v~e~~~v~~ELe~a-----r-~ki~~Lqrk~~~~a~----q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl 233 (437)
-.....+..|++.+ + .+++.||.++..... ..+..+.-+.+|+-.+ +.++.+.-..+++--
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l---~~~i~k~~~~i~~s~ 934 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKL---EADIAKLTVAIKTSD 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHH---HHHHHHhHHHHhcCc
Confidence 22233444444444 4 777777777775532 2233333444443333 333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccc----ccc-----ch---hhhhHHHHHHHHHHHHHHhhhh
Q 039797 234 NAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSV----TKI-----ED---EGTTMENYRQLLNECEQLQKDR 301 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~----~~~-----E~---~~v~~e~~~~L~kqvEqLq~dR 301 (437)
..+..+...+.+|.+-...+..+...|...+...+..+.-. .+. |. -.-.+.+++++.+.+-.|+.+|
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~r 1014 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAER 1014 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444443333321110 000 10 0113445566666666677766
Q ss_pred HH
Q 039797 302 AA 303 (437)
Q Consensus 302 ~s 303 (437)
..
T Consensus 1015 Id 1016 (1293)
T KOG0996|consen 1015 ID 1016 (1293)
T ss_pred cc
Confidence 55
No 13
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.83 E-value=0.99 Score=51.87 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=125.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 93 DKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 93 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
.+++.+.-|.+|-..|..+.---- ..+-++..++..+++++..-..+...-.+....-.+|.++|++++++
T Consensus 327 qkd~~~~~~~~~~~e~~~~~~~l~---------~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 327 QKDPRELQIEQLSREVAQLKAQLE---------NLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred cCChhhHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777666665542211 12345667778888888777777666666666666777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHH----HHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNA----IQKLENELKELHS 248 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~----l~~LE~Ev~ELrr 248 (437)
..+.+.+++.+...+.++.++... .+.++-.+++....|.....++.++.+++.+++.+ +-+++.+..+|-.
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~----~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d 473 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALA----AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND 473 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999887777775543 34556677777777777777777777777666442 2233333333333
Q ss_pred HhHHHHHHHHHHHHh-------HHHhhhhccc-ccccc----hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 039797 249 VIDQLQEQNSELLNK-------LQEWHQSASS-VTKIE----DEGTTMENYRQLLNECEQLQKDRAAEAKELIYLRWANA 316 (437)
Q Consensus 249 ~nk~LQ~EK~eL~~k-------L~~Ae~~~~s-~~~~E----~~~v~~e~~~~L~kqvEqLq~dR~seVEELVYLRWvNA 316 (437)
...++|.+-..+..| |++.+..+.. ..+.+ ......+.++...-|++.+-..+=..+.++|--+=--+
T Consensus 474 ~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~ 553 (980)
T KOG0980|consen 474 QLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEERE 553 (980)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333332222222 2222111100 00000 00112233445556666666666666677766552111
Q ss_pred HHHHHHHhh
Q 039797 317 CLRHELMRN 325 (437)
Q Consensus 317 CLR~ELrn~ 325 (437)
-+|.|+-+.
T Consensus 554 ~~~~e~e~s 562 (980)
T KOG0980|consen 554 ALRLEAERS 562 (980)
T ss_pred HHHHHHHhh
Confidence 277777665
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=96.79 E-value=1.3 Score=49.74 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 039797 138 LRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK----VLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 138 Le~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~----v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
++..+......++....++..|+.+-..|++.+.++.. +..++..+..++..+++++...
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 584 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33334444455555556666666666666666666665 3444445555566666655533
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.75 E-value=1.5 Score=49.82 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039797 148 YVELLDREV 156 (437)
Q Consensus 148 Ei~~L~~kI 156 (437)
++..+..++
T Consensus 302 ~~~~~~~~~ 310 (1164)
T TIGR02169 302 EIASLERSI 310 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 16
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.71 E-value=1.1 Score=51.86 Aligned_cols=110 Identities=27% Similarity=0.326 Sum_probs=77.8
Q ss_pred HHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhhHHhH
Q 039797 155 EVSSVESENKRLENLVVL-----------YLKVLDQLQQWKSESGLLKRKVKKL---VRKTKELSDIIREQNLKIESADA 220 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v~e-----------~~~v~~ELe~ar~ki~~Lqrk~~~~---a~q~K~q~~~lkqqv~~l~~~E~ 220 (437)
....||.+|.||.+-++. +.++.+|+|.-++++.+|.+.-..+ ..+...+++-+++||-+--..|+
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~ 448 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEE 448 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 445788899999977764 4577899999999999998865555 44567788889999977655544
Q ss_pred ---HHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 221 ---ELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 221 ---E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
....+..++|.|..-|.+==.++++|+..|.+|++-+++|..-|
T Consensus 449 MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DL 495 (1243)
T KOG0971|consen 449 MVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDL 495 (1243)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345567777755444444445566777888888888665443
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.71 E-value=0.3 Score=51.69 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=97.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
-.....++..|...+..++.+-..++..+..+...- ...+.++++++..-..+...+...+..|+.+-..+...+..+
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~--~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~ 253 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN--GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 356777888888888888777776666666665432 244666776666666666666666666666666665554443
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH--------------------------HHhhHHHHHH--------------HH
Q 039797 174 LKVLDQLQQW----KSESGLLKRKVKKL--------------------------VRKTKELSDI--------------IR 209 (437)
Q Consensus 174 ~~v~~ELe~a----r~ki~~Lqrk~~~~--------------------------a~q~K~q~~~--------------lk 209 (437)
..+..+++.. +.++..+++-+... ...-+.++.. +.
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~ 333 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222 22222222211111 0000111111 12
Q ss_pred HHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 210 EQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 210 qqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
+....+...+..+......++........|+.++.+|...+.++..+..+|..+|+.+...
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 2222223333333344445555556677888888888888888888888888888877654
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.63 E-value=0.46 Score=56.37 Aligned_cols=65 Identities=0% Similarity=0.043 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 105 RFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 105 r~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
..-+..|+.+=..|+.++..|-+ ...+.+|+.++.....+++.+..++..++.+..+++.++..+
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555554433 224566777777777777777666666666555555544444
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.59 E-value=0.66 Score=51.29 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=40.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc---cccccc-chhh---hhHH-------HHHHHHH
Q 039797 227 DVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA---SSVTKI-EDEG---TTME-------NYRQLLN 292 (437)
Q Consensus 227 ~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~---~s~~~~-E~~~---v~~e-------~~~~L~k 292 (437)
.+...+++.++.|..++.++-.....-.+.-..|...++..-..+ .|...+ |... .-++ |...|.|
T Consensus 440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQk 519 (594)
T PF05667_consen 440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQK 519 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444444444332221 111111 2111 1122 3344666
Q ss_pred HHHHHh---hhhHHHHHHHHHH
Q 039797 293 ECEQLQ---KDRAAEAKELIYL 311 (437)
Q Consensus 293 qvEqLq---~dR~seVEELVYL 311 (437)
++..|. ..=|+-++||||-
T Consensus 520 eiN~l~gkL~RtF~v~dElifr 541 (594)
T PF05667_consen 520 EINSLTGKLDRTFTVTDELIFR 541 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 664443 3569999999994
No 20
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.55 E-value=0.49 Score=56.04 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHHHHHHHH----------HHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Q 039797 240 ENELKELHSVIDQLQEQNS----------ELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKE 307 (437)
Q Consensus 240 E~Ev~ELrr~nk~LQ~EK~----------eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEE 307 (437)
|.|..=||.-|+.||-|.| ||.+||-.||..+... -+--+.+.++++++-||+|.|+..+-.++.=
T Consensus 1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a--~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA--QKRAMDAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777999999987 6777777776533222 1233567789999999999999998776543
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.49 E-value=1.6 Score=54.06 Aligned_cols=166 Identities=25% Similarity=0.252 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
.+.++..+...+++.+++...|+.+.-+ .+..+.+|+..+......+..+.++...++.+++.|+.++..+...
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~------~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRK------LEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666655433 2234444444444444444444444444444444444444443333
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhHHHHH---HHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 039797 177 LDQLQQWKS----ESGLLKRKVKKLVRKTKELSD---IIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSV 249 (437)
Q Consensus 177 ~~ELe~ar~----ki~~Lqrk~~~~a~q~K~q~~---~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~ 249 (437)
...|-..|. .++.|+-.++..-++++.... -+-+++..++..-+.--+...++|+ ..++||.+...++..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek---~~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK---AKRKLEGELKDLQES 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhH
Confidence 333322222 233444444433333332221 1222333333222222222333442 234666666666666
Q ss_pred hHHHHHHHHHHHHhHHHhhhhc
Q 039797 250 IDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 250 nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
...+..++.+|...|.-.+..+
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El 1078 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665555443
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=96.47 E-value=2.1 Score=47.96 Aligned_cols=15 Identities=7% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhh
Q 039797 287 YRQLLNECEQLQKDR 301 (437)
Q Consensus 287 ~~~L~kqvEqLq~dR 301 (437)
.+.|.++++.|+...
T Consensus 461 i~~l~~~~~~l~~~~ 475 (880)
T PRK03918 461 LKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666655544
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.37 E-value=0.41 Score=52.46 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 039797 234 NAIQKLENELKELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
..++.||.++..|++-|.+|..+-...-..|+.
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345677777777777777776666655555543
No 24
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.34 E-value=0.33 Score=56.26 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=97.9
Q ss_pred cccCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHH
Q 039797 83 MKSKGDLEFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESE 162 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsE 162 (437)
+.+.+.+.+....++..++..|+.-++ +|+.||-|-. ..+..|+++|.-..+|++.|+..+..+..+
T Consensus 161 ~~sp~~~~~~~~~hL~velAdle~kir-------~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 161 YKSPYDIVVKKNLHLEVELADLEKKIR-------TLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred CCCcchhhcchhHHHHHHHHHHHHHHH-------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666666665554 5555554433 568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHH---HHHHHHHHHHhhhHHhHHHhhhhhHHHHh
Q 039797 163 NKRLENLVVLYLKVLDQLQQWKSE-------SGLLKRKVKKLVRKTKE---LSDIIREQNLKIESADAELLRNCDVLEEK 232 (437)
Q Consensus 163 n~rL~~~v~e~~~v~~ELe~ar~k-------i~~Lqrk~~~~a~q~K~---q~~~lkqqv~~l~~~E~E~~~~~~e~E~K 232 (437)
..|...-..+..+++.+-++|-.. +.-++.++.-+-+.++. .--||++|+-++.++-+- .....+|=+=
T Consensus 228 a~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiql 306 (1195)
T KOG4643|consen 228 AHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQL 306 (1195)
T ss_pred HHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHH
Confidence 999998888888887777665322 12233444333333221 223566666666554311 1111111111
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 233 SNAIQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 233 l~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
-+.+.+|+.+--=.|-...+|+.||.-|-
T Consensus 307 kqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 307 KQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 23355666665555555555555555443
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.31 E-value=1.1 Score=55.50 Aligned_cols=121 Identities=16% Similarity=0.235 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhh
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRN 225 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~ 225 (437)
...+.....++.+|-.-+.+|..++.+.....++=...|..+.-.++|+..+..-.+..+..++.++..++. +..+.
T Consensus 998 ~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~---~l~kk 1074 (1930)
T KOG0161|consen 998 QDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN---QLKKK 1074 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHH
Confidence 333344444444444444444444444444444444444444445555555554445555555555554432 23344
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
..++..=...+.++...+..+.+..++||-++.+|...|++-..
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444556677777777777778888878777777765543
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.29 E-value=0.65 Score=54.20 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHH-------HHhHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHD-LKEQESLLMELRNMIFLEKSYVELLDRE-------VSSVESENKRLEN 168 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~k-------I~sLEsEn~rL~~ 168 (437)
++.|+..|.+.+.+|+....+.+..|-++.. |++=...+..+++++..+..|+..|.-. |..++.+-..+..
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~ 745 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKK 745 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHH
Confidence 3445555555555555555555555555433 2333344556666666666666666653 3444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH--------------hhH
Q 039797 169 LVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEE--------------KSN 234 (437)
Q Consensus 169 ~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~--------------Kl~ 234 (437)
...++..-...++.++.++..++.+.+...+.=.+....|++...++.+.+.|+..+++.+.. .++
T Consensus 746 ~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~ 825 (1074)
T KOG0250|consen 746 KEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLE 825 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhH
Confidence 444444445555566666666666666555555566667788888888887777665554443 355
Q ss_pred HHHHHHHHHHHHHH
Q 039797 235 AIQKLENELKELHS 248 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr 248 (437)
.++..|+++..+..
T Consensus 826 ~l~~~E~~~~~~e~ 839 (1074)
T KOG0250|consen 826 ELKQKEVEKVNLEE 839 (1074)
T ss_pred HHHHHHHHHHhhhc
Confidence 56666666655543
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.21 E-value=3 Score=49.72 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
..+..++..+++....++.+++.+...|...
T Consensus 994 ~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 994 EKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666665555554
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.12 E-value=3.1 Score=47.54 Aligned_cols=163 Identities=24% Similarity=0.273 Sum_probs=107.0
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKE---LSDIIR 209 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~---q~~~lk 209 (437)
+.|-.|..+|..++..++.....|..+++|..++..++.+ +...++....+|+.|+++|..+..+.+. ++..++
T Consensus 343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~---l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k 419 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED---LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK 419 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888888888888999998888877765 5677788888888888887655544322 244445
Q ss_pred HHHH-------------hhhHHhHHHhhhhhH--------HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 210 EQNL-------------KIESADAELLRNCDV--------LEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 210 qqv~-------------~l~~~E~E~~~~~~e--------~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.++. .|+..-.+-.+.... -..+...+..+..++.+++..+..||-+..+....|..+.
T Consensus 420 ~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 420 ERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 5444 111111111111111 1123455778889999999999999999999999998887
Q ss_pred hhccccc----ccchhh--------hhHHHHHHHHHHHHHHh
Q 039797 269 QSASSVT----KIEDEG--------TTMENYRQLLNECEQLQ 298 (437)
Q Consensus 269 ~~~~s~~----~~E~~~--------v~~e~~~~L~kqvEqLq 298 (437)
..++++. +-.+.. ..++.+.+|.+|++.++
T Consensus 500 ee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 500 EEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred hHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6644432 212211 12566678888888765
No 29
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.93 E-value=1.7 Score=41.73 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
-.-|..|+.-|.+++.++...+..+.+. ..|...|..-+..++.|+..|+.++..|.+-.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei--------------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEI--------------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888887777665543 33455688888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 039797 178 DQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESA 218 (437)
Q Consensus 178 ~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~ 218 (437)
..|..+|++++.++++++.. +-+..+|.++...++..
T Consensus 86 ~~L~~~k~rl~~~ek~l~~L----k~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 86 QSLQNLKARLKELEKELKDL----KWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99999999999988877765 44455677776666543
No 30
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.77 E-value=1.4 Score=39.38 Aligned_cols=85 Identities=27% Similarity=0.354 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHH
Q 039797 165 RLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELK 244 (437)
Q Consensus 165 rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ 244 (437)
+.+.++.-+......|..+|..+..++..+.........--..|.+ .+.. -+-+ -..|+.++.
T Consensus 46 ~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~-------~e~s-----w~~q-----k~~le~e~~ 108 (132)
T PF07926_consen 46 KYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE-------SEAS-----WEEQ-----KEQLEKELS 108 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh-----HHHH-----HHHHHHHHH
Confidence 3445566666666666666666666655444432222111111111 1110 0111 237889999
Q ss_pred HHHHHhHHHHHHHHHHHHhHHH
Q 039797 245 ELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 245 ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
++++...+|..+|.=|-..|++
T Consensus 109 ~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888864
No 31
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.63 E-value=1.6 Score=46.93 Aligned_cols=89 Identities=26% Similarity=0.255 Sum_probs=56.0
Q ss_pred CcccHHHHHHHHHHHHHHHH-------HHHHHHHHHH----hhhhhhHh----hH-----------HHHHHHHHhH-hhh
Q 039797 94 KLHYELEILNLRFQIEELQK-------RELETKMQFA----RYHDLKEQ----ES-----------LLMELRNMIF-LEK 146 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqE-------RE~~LE~eLL----Ey~~LKEQ----ea-----------~v~ELe~~L~-~k~ 146 (437)
..|++.-+.-|.+-|.+|.. |-.+|..+-+ .|.-|.|| +. ...|+...+. .+.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas 296 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS 296 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888888776 4444444432 34555444 22 1222222222 456
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQ 182 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ 182 (437)
-+++.|..++-.|+.||.+|+..++.......+|+.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999999999888877666555543
No 32
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.59 E-value=3 Score=42.08 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=23.0
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 91 FQDKLHYELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 91 ~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
.-+..++..++..|+..+..|+.+-.+|+..+-
T Consensus 73 ~ld~~~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 73 ELDATDVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred EEccchhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334556677888888888888777777666544
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.46 E-value=5.3 Score=44.11 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=67.2
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQN 212 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv 212 (437)
..+..|+..|.....+.+.|..+...+...++.|.. +...+..+++.++.+|..|...+.....+.+++-..+.+ .
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~---E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~-l 246 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKE---ERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDK-L 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345566666766666666676666666666555543 334456667777777777777776665555333222211 1
Q ss_pred HhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 213 LKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 213 ~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
..+. .+......++. +.|++.-.++....+.+..++.++..|...|..++.+
T Consensus 247 k~~~---~elEq~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~ 298 (546)
T PF07888_consen 247 KELK---AELEQLEAELK---QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQ 298 (546)
T ss_pred HHHH---HHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1111 11101111122 2344444555544455566666666666666666544
No 34
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.45 E-value=2.5 Score=41.16 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHD-LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
..||-.||..+++++-.-...+.++....+ +......+...+++|..+..+++.|+.++..|+.|...|+..++..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 478999999999998888888888887776 5666777889999999999999999999999999999999988885
No 35
>PRK09039 hypothetical protein; Validated
Probab=95.45 E-value=1.3 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
|..+...+..++.++.+|++..+
T Consensus 83 l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 83 VANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555433
No 36
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.37 E-value=0.0043 Score=68.61 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039797 286 NYRQLLNECEQLQKDRAAEAKELIYLRWANACL 318 (437)
Q Consensus 286 ~~~~L~kqvEqLq~dR~seVEELVYLRWvNACL 318 (437)
++..|...++.|+..+-.-+.|.--|||.|.-|
T Consensus 392 e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 392 ENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555566655433
No 37
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.36 E-value=0.84 Score=46.89 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhh
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNC 226 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~ 226 (437)
..++.|..|+..||.||..|+.++..+..-...+|.- -+.+...-=.|+.....|++.|. .+++++-
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek----------EqqLv~dcv~QL~~An~qia~Ls---eELa~k~ 226 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK----------EQQLVLDCVKQLSEANQQIASLS---EELARKT 226 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH----------HHHHHHHHHHHhhhcchhHHHHH---HHHHHHH
Confidence 3478999999999999999999988877444333221 11111111122222333333332 1122222
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 227 DVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 227 ~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.+...--.-|-.|=.+++.|.+..+.+=.||.+|...|.++.
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222111122334556667777777777777777777777664
No 38
>PRK11637 AmiB activator; Provisional
Probab=95.34 E-value=4.4 Score=42.44 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
.+|+.+..++.....+++.++.+|......
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554443
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.29 E-value=0.95 Score=40.58 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=58.6
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIRE 210 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkq 210 (437)
..|-.|...|.....|+..+...+..|+.+...+.+++.....-..++.....++..|+.+++..-.+--.-+-++++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346667777777788888888999999999999999999888888888888888888877666554443333444444
No 40
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.15 E-value=7.6 Score=44.18 Aligned_cols=182 Identities=20% Similarity=0.198 Sum_probs=84.7
Q ss_pred cccCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHH
Q 039797 83 MKSKGDLEFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESE 162 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsE 162 (437)
+++.-.+-+.++++...|++.+...|+.|.+.=..=+.+||-. .-+.+.+.+-+..+....-....-+-.|++|.+|
T Consensus 330 ~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~---e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e 406 (961)
T KOG4673|consen 330 QRSSSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLAD---EIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREE 406 (961)
T ss_pred cCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHhhcccccchHHH
Confidence 4555555666777778889988888888766444444444322 2222222221111111111111122234555555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHH---HHHHHhhhHHhHHHhh--------h
Q 039797 163 N-KRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRK-----TKELSDII---REQNLKIESADAELLR--------N 225 (437)
Q Consensus 163 n-~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q-----~K~q~~~l---kqqv~~l~~~E~E~~~--------~ 225 (437)
- +|+.+.-.-...+.+|-.++|-+++-|+..+...... --++|..| .+++++-+....-+.+ +
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~ 486 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA 486 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 4 5555444455555666666666666444433322111 01111111 2222222222111111 1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhHHHh
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVID---QLQEQNSELLNKLQEW 267 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk---~LQ~EK~eL~~kL~~A 267 (437)
+.-++|+-..|..|+.|-.-|++... +.+..-+|-++|+.+-
T Consensus 487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae 531 (961)
T KOG4673|consen 487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAE 531 (961)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 11233444467788887777777653 3334445666666554
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.12 E-value=11 Score=46.02 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
+..+...+.++..+...|+.+.-.+-.-++.......+...+......++.|...+...+.....++. +...+..++
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeelee---eleeleeEl 385 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADE---QQEENEARA 385 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 55566666677777777766655544433333222222333333333333333333333222222222 222223444
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHhhhHHhHHHh---hhhhHHHHhhHHHHHHHHHHHHHHHHhHHHH
Q 039797 181 QQWKSESGLLKRKVKK---LVRKTKELSDIIREQNLKIESADAELL---RNCDVLEEKSNAIQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 181 e~ar~ki~~Lqrk~~~---~a~q~K~q~~~lkqqv~~l~~~E~E~~---~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ 254 (437)
+.+..++..|+.++.. .......++..+.+.+..++..+.=-. -.+++++. .+..++..+.+++....+|+
T Consensus 386 eelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~---~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 386 EAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED---WLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 122223333334444444433322110 01123332 23355555555555555555
Q ss_pred HHHHHHHHhHHHhhh
Q 039797 255 EQNSELLNKLQEWHQ 269 (437)
Q Consensus 255 ~EK~eL~~kL~~Ae~ 269 (437)
.+...+...++.-+.
T Consensus 463 ~kL~~lea~leql~~ 477 (1486)
T PRK04863 463 QKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 42
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.09 E-value=4.3 Score=42.75 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=27.6
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 92 QDKLHYELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 92 ~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
=++..+..++..|+..+..|+.+..+|+.++-
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999988764
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.08 E-value=3.1 Score=41.42 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=55.0
Q ss_pred HHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH
Q 039797 138 LRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIES 217 (437)
Q Consensus 138 Le~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~ 217 (437)
...-|....++++.++..+..++.+...|+.++..+ ..+|..++.+++.++.++ .+-.+-.++..|...+..+
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~---e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~a-- 101 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQL---ESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIA-- 101 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHH--
Confidence 333444444555555555555555555555555443 345555555555555555 2222222333333322222
Q ss_pred HhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 218 ADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 218 ~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
-.....|+.++.++......|+.+.-.|..++...+.
T Consensus 102 ---------------k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 102 ---------------KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234456666666666666666666666666655554
No 44
>PRK01156 chromosome segregation protein; Provisional
Probab=95.07 E-value=8 Score=43.94 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRE 115 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE 115 (437)
..++..|.+-++.+...-
T Consensus 482 ~~~i~~l~~~~~~l~~~~ 499 (895)
T PRK01156 482 EEKIREIEIEVKDIDEKI 499 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444433
No 45
>PRK11637 AmiB activator; Provisional
Probab=95.01 E-value=5.5 Score=41.72 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHD-LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
...++..++..+..++..=..++.++-+.-. |..-+..+..++..+.....+|..++.+|..++.+...+++++.....
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544443333333321100 112222333344444444444444444444444444444444443333
Q ss_pred H
Q 039797 176 V 176 (437)
Q Consensus 176 v 176 (437)
.
T Consensus 125 ~ 125 (428)
T PRK11637 125 L 125 (428)
T ss_pred H
Confidence 3
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.96 E-value=0.96 Score=45.95 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHHHH
Q 039797 241 NELKELHSVIDQLQEQN 257 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK 257 (437)
.||..|++....||..-
T Consensus 276 ~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665543
No 47
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.90 E-value=8.2 Score=43.18 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHH-HHhHHHH-----HHHHHHHHHHHHHHHHHHH
Q 039797 108 IEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDRE-VSSVESE-----NKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 108 VeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~k-I~sLEsE-----n~rL~~~v~e~~~v~~ELe 181 (437)
+.+.++--..|+--.-+|-++|.|+..|.-|+..+..-....+..-.+ ++..+.. +++......+-..+.++++
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555556677788889999999988886655555444332 2233322 2233333333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 039797 182 QWKSESGLLKRKVKKLVRKTKELSDIIREQN-LKIESADAELLRNCDVLEEKSNAIQKLENELKELHS 248 (437)
Q Consensus 182 ~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv-~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr 248 (437)
.+..+|..||+.+. .+..++..++.++ ...-..-.++.-...+++.--+++..||-|+..||-
T Consensus 200 ~le~ki~~lq~a~~----~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 200 ELEKKISSLQSAIE----DTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHH----hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444332 2233333333331 001111223333345666666667777777777764
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.88 E-value=1 Score=46.07 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh-----hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDLKEQ-----ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
..+..|-.++-.|.++-..|+.++-....+.+. ...+..++..|+.-..+|.....++..++.+...+...+.
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~-- 242 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE-- 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344455555555555555555555554444333 2234444455555555555555555555444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIE 216 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~ 216 (437)
....+....+..|..+++.+..-...+..++..|+.++..|+
T Consensus 243 -~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 243 -DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 223334444444555555444444444444444444444443
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.87 E-value=5.1 Score=40.74 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHhhHHHHHHHHHhHhhhhHHHHH-------------HHHHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQ--------FARYHDLKEQESLLMELRNMIFLEKSYVELL-------------DREVS 157 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~e--------LLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L-------------~~kI~ 157 (437)
--+..|++-|.+.+.-=..++.+ |-|||..-.. ....|.+++..-..-.... .--+.
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d--~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~ 152 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPD--MRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKE 152 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666665 3488876433 3345555555433322222 22234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhh-HHHHhhHHH
Q 039797 158 SVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCD-VLEEKSNAI 236 (437)
Q Consensus 158 sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~-e~E~Kl~~l 236 (437)
.|+.....|+.....+.+....+....-++...+..+ ..++..++..-.++..++. +++.=-+.|
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L--------------~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL 218 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAEL--------------EEELENLKQLVEEIESCDQEELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 4444444444444444444333333333333333322 2222222322222332222 444444455
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.++..++.++|+...+|+.+...+..+++...
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655554443
No 50
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.82 E-value=3.3 Score=39.77 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=73.3
Q ss_pred HHHhhhhh--hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 121 QFARYHDL--KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 121 eLLEy~~L--KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
++=.||.= ...-..|.-|..++..-........+.+..+..||.+| .+-|..|+.++..|++++.. .
T Consensus 13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L----------~epL~~a~~e~~eL~k~L~~-y 81 (201)
T PF13851_consen 13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRL----------SEPLKKAEEEVEELRKQLKN-Y 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH-H
Confidence 34456652 33444555566665555555555666666666666666 56677777788888887775 4
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 199 RKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 199 ~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
.+.|..+..++.++..++. .+++|+.+-.-|......|+.|..+|-.+...+
T Consensus 82 ~kdK~~L~~~k~rl~~~ek-----------------~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEK-----------------ELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666655443331 134666666666667777777777777666655
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.73 E-value=7.3 Score=41.81 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV-VLYLK 175 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v-~e~~~ 175 (437)
...||..+...+..-+.+-..|+.+ |++++..+..++.+|..-..+++.++..|..+......|+.|- .+-..
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~ 116 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQ------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRR 116 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888888876 5788999999999999999999999999999999888888776 33334
Q ss_pred HHHHHHHH
Q 039797 176 VLDQLQQW 183 (437)
Q Consensus 176 v~~ELe~a 183 (437)
+.+.|.++
T Consensus 117 La~~L~A~ 124 (420)
T COG4942 117 LAEQLAAL 124 (420)
T ss_pred HHHHHHHH
Confidence 44444433
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.67 E-value=5 Score=39.99 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 239 LENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
++.+|.+++..-..+..+..+|..+|
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444443
No 53
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=94.60 E-value=4.3 Score=43.92 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhHHHHHHHH----------HHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 240 ENELKELHSVIDQLQEQNS----------ELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 240 E~Ev~ELrr~nk~LQ~EK~----------eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
|.|..=||.-|+.||.|-| ||.+||-.||..+... .+--+.+.++++++-+|++.|+..+-.++.=|
T Consensus 402 EkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 402 EKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--QERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667779999999976 6777777776533222 12335567899999999999999998876543
No 54
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.56 E-value=4.9 Score=39.04 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH--
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL-- 174 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~-- 174 (437)
+..|...|+..|.-+.+==.+|-.++...+ -|-.....+=..-+.-..|++.|+-.+.+||++|.+|.++..+.-
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~---~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE 96 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLR---KQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655544333 233333322222233466788888888999999999888776543
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 039797 175 --KVLDQLQQWKSESGLLKRKVKKLVRKTKEL---SDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSV 249 (437)
Q Consensus 175 --~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q---~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~ 249 (437)
.+..+++....++..|..-......++++- ...|+-|+..++.. +..++..+..+...+.+|..-++|.|.+
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l---~~~~da~l~e~t~~i~eL~~~ieEy~~~ 173 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL---ICQRDAILSERTQQIEELKKTIEEYRSI 173 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455556666666555555444444444332 23445555444322 3366778889999999999999999999
Q ss_pred hHHHHHHHHHHHHhHH
Q 039797 250 IDQLQEQNSELLNKLQ 265 (437)
Q Consensus 250 nk~LQ~EK~eL~~kL~ 265 (437)
+-+|-.+++.|-..|.
T Consensus 174 teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 174 TEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998884
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=14 Score=43.76 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVS 157 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~ 157 (437)
..+.-.+|..|.....+|+.-...|+.==-+..+|+-|-.....|+++|..+.-+..++...+.
T Consensus 669 ~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~ 732 (1174)
T KOG0933|consen 669 GADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLE 732 (1174)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677888888888887777776665556667777888899999999999999988887765
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.40 E-value=5.8 Score=39.22 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=25.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
...|+.||..||..|..+..--.+|+.++--+..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4447888888888888888777777776665443
No 57
>PRK01156 chromosome segregation protein; Provisional
Probab=94.30 E-value=12 Score=42.54 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
+..+|..|..-+++|.++...|+.++-++-.+.+... ..--+.+..+..++..+..++..+..+-..|.+....|..+
T Consensus 474 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l 551 (895)
T PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEI 551 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888888877665333222110 01112233334444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039797 177 LDQLQQWKSESGLLKRKV 194 (437)
Q Consensus 177 ~~ELe~ar~ki~~Lqrk~ 194 (437)
..++...+ ++.|..++
T Consensus 552 ~~~~~~~~--l~~l~~~~ 567 (895)
T PRK01156 552 KNRYKSLK--LEDLDSKR 567 (895)
T ss_pred HHHHHHhh--HHHHHHHH
Confidence 55554442 44444433
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=15 Score=43.41 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=85.2
Q ss_pred HHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH-------HHHH----HHHHHHHHHHHHH
Q 039797 116 LETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE-------NLVV----LYLKVLDQLQQWK 184 (437)
Q Consensus 116 ~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~-------~~v~----e~~~v~~ELe~ar 184 (437)
..||.-.-++.. +++..+.+|++.|.....+++......+.=+-+-++|+ .++. ++..+..++...+
T Consensus 772 ~~lE~~~~d~~~--~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 772 STLEKKMKDAKA--NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHHhHhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 34444555555555444444443333333333333333 2221 1122233444455
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 185 SESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 185 ~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
+++..|..++.......+.-...|+.+-.++.....++.......++.++...+++.++.+|---...++.++.+...++
T Consensus 850 ~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v 929 (1174)
T KOG0933|consen 850 SELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEV 929 (1174)
T ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHH
Confidence 55566666665554444444455566666666666666555556666677777777777777777788888888888888
Q ss_pred HHhhhh
Q 039797 265 QEWHQS 270 (437)
Q Consensus 265 ~~Ae~~ 270 (437)
+.-...
T Consensus 930 ~~l~~k 935 (1174)
T KOG0933|consen 930 EKLLKK 935 (1174)
T ss_pred HHHHHh
Confidence 776554
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.96 E-value=18 Score=43.18 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh-cccccccc-hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS-ASSVTKIE-DEGTTMENYRQLLNECEQLQKDRAAEAKELIYLRW 313 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~-~~s~~~~E-~~~v~~e~~~~L~kqvEqLq~dR~seVEELVYLRW 313 (437)
..++...+..+.......+.+..+-...|+.+... +++.-.-+ .....+.....|-+++.....+|. .|-| |-+|
T Consensus 727 ~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~-~V~e--Y~~~ 803 (1201)
T PF12128_consen 727 EAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA-EVIE--YEDW 803 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHH--HHHH
Confidence 34444555555555544444444444444444321 11110000 011133444556666666555554 3333 8998
Q ss_pred HHH
Q 039797 314 ANA 316 (437)
Q Consensus 314 vNA 316 (437)
+.-
T Consensus 804 ~~~ 806 (1201)
T PF12128_consen 804 LQE 806 (1201)
T ss_pred HHH
Confidence 765
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.92 E-value=13 Score=41.30 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLL 123 (437)
...|...+..|+++=.+|+.+|-
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666766664
No 61
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.91 E-value=19 Score=43.31 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKM--QFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLD 178 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~--eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ 178 (437)
...|.+.+..++-++..|.. +-+-....++=+-.+.+.++++..-..++..+...++-++..|..+..........++
T Consensus 467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk 546 (1317)
T KOG0612|consen 467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK 546 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444445555445554442 1111122222233333444444444444444555555555555555555555555555
Q ss_pred HHH
Q 039797 179 QLQ 181 (437)
Q Consensus 179 ELe 181 (437)
+|+
T Consensus 547 ~le 549 (1317)
T KOG0612|consen 547 QLE 549 (1317)
T ss_pred HHH
Confidence 555
No 62
>PRK09039 hypothetical protein; Validated
Probab=93.81 E-value=3.6 Score=42.48 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHD-LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
..++..+|..|+.....++.+..+|+..+-.-++ ..+-+..+..|+..|....+++......|..|..|...|++|
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888877776654333 223345555566666555555555555555555555555555
No 63
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.80 E-value=17 Score=42.33 Aligned_cols=55 Identities=24% Similarity=0.232 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhH-------hhHHHHHHHHHhHhhhhHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYH--------DLKE-------QESLLMELRNMIFLEKSYVEL 151 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~--------~LKE-------Qea~v~ELe~~L~~k~~Ei~~ 151 (437)
++..+.++.+.+..||-+=.+||+|+--+- .||| ..+.+-+|+..|.+++.+|-+
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM 166 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence 456678888899999988888888875442 2333 334455666666666666543
No 64
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.79 E-value=7 Score=37.98 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH----HHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY----LKV 176 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~----~~v 176 (437)
|..|+.-+...++|...++.+|-+.- ..+.....++.-|.++|..|+.+..+....+... ..+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~-------------~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~ 69 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAE-------------KRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEA 69 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666667777666666554432 2333334555666666666666655554322221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHH----HHHHHHHHHHHHHHhHH
Q 039797 177 LDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNA----IQKLENELKELHSVIDQ 252 (437)
Q Consensus 177 ~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~----l~~LE~Ev~ELrr~nk~ 252 (437)
...++......+.|..+... .-..+..|..++......-.++-++++++..|+.. |...|..+..+-....+
T Consensus 70 e~~~de~er~~k~lE~r~~~----~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~e 145 (237)
T PF00261_consen 70 EKRADESERARKVLENREQS----DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKE 145 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Confidence 11111111112222222222 22333444444444444444444555555555432 23344444444455555
Q ss_pred HHHHHHHHHHhHHHhh
Q 039797 253 LQEQNSELLNKLQEWH 268 (437)
Q Consensus 253 LQ~EK~eL~~kL~~Ae 268 (437)
|+.+...+...|.+.+
T Consensus 146 LE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555444444443
No 65
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=93.77 E-value=0.65 Score=40.42 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=55.4
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHhhHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ-QWK--------SESGLLKRKVKKLVRKTKELS 205 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe-~ar--------~ki~~Lqrk~~~~a~q~K~q~ 205 (437)
..+|+.+|..-..|.+.|+++|.-|+.+|++|..++..|..--..++ .+. .+-..||..++ -++.|+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk----~a~~qi 78 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELK----LAREQI 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHH----HHHHHH
Confidence 57899999999999999999999999999999999998876544443 111 11123333332 355666
Q ss_pred HHHHHHHHhhh
Q 039797 206 DIIREQNLKIE 216 (437)
Q Consensus 206 ~~lkqqv~~l~ 216 (437)
-.|..+|.+++
T Consensus 79 ~~Ls~kv~eLq 89 (96)
T PF11365_consen 79 NELSGKVMELQ 89 (96)
T ss_pred HHHhhHHHHHh
Confidence 66666666665
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.57 E-value=0.02 Score=63.46 Aligned_cols=86 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhHhhhhHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039797 130 EQESLLMELRNMIFLEKSYV------ELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKE 203 (437)
Q Consensus 130 EQea~v~ELe~~L~~k~~Ei------~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~ 203 (437)
+.+..+.+|+.+|..-.... ...-..|..||.+|.+|.+++..+..+.+-.+.++.+++-|++|+... +...+
T Consensus 227 e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-E~~~~ 305 (722)
T PF05557_consen 227 EAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL-EELEE 305 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34566666666554333322 112235788999999999999999999999999999999999998865 34445
Q ss_pred HHHHHHHHHHhhh
Q 039797 204 LSDIIREQNLKIE 216 (437)
Q Consensus 204 q~~~lkqqv~~l~ 216 (437)
++..+.-++..|+
T Consensus 306 el~~lq~e~~~Le 318 (722)
T PF05557_consen 306 ELAELQLENEKLE 318 (722)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444444
No 67
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.23 E-value=6.4 Score=43.80 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 039797 239 LENELKELHSVI 250 (437)
Q Consensus 239 LE~Ev~ELrr~n 250 (437)
|..|...||...
T Consensus 424 L~~e~r~lk~~~ 435 (594)
T PF05667_consen 424 LIEEYRRLKEKA 435 (594)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.93 E-value=25 Score=41.79 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
.|+.+|+.|+-.+..|-.+-.++..++
T Consensus 405 ~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 405 QLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 69
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.91 E-value=7.7 Score=40.79 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q 039797 102 LNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL- 180 (437)
Q Consensus 102 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL- 180 (437)
+.||..-+.+++|-...+.=-+----|+.|-..+++ -+.--..++..|.-.|..+.+||.+|+.++..+..-..|-
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~---vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE---VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 467777777777765544322223334444444443 2233456778888899999999999999999888776655
Q ss_pred HHHHHHHHHHHH
Q 039797 181 QQWKSESGLLKR 192 (437)
Q Consensus 181 e~ar~ki~~Lqr 192 (437)
|.+..=+++|-.
T Consensus 162 eesq~LnrELaE 173 (401)
T PF06785_consen 162 EESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHH
Confidence 455554555544
No 70
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=1.6 Score=48.58 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=40.4
Q ss_pred hHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 142 IFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVR 199 (437)
Q Consensus 142 L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~ 199 (437)
+.....++..+..+++.|+.||.-|+..+.++. .+++..++++..+++++.....
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~ 471 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVR 471 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 345566788888899999999999888877764 6667777777777776664433
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.66 E-value=27 Score=41.46 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhh---hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQKRELE-------TKMQFARYHDL---KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~-------LE~eLLEy~~L---KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
-+++.++..|++|++--.- |+.||-.|.-= -.=++.|..|+..|.--..+-+....+++.|..||..|+-
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4566788888888876222 33333322210 1124677788888888888888888899999999999986
Q ss_pred HHHHHH
Q 039797 169 LVVLYL 174 (437)
Q Consensus 169 ~v~e~~ 174 (437)
+-+.+.
T Consensus 337 q~eqL~ 342 (1195)
T KOG4643|consen 337 QKEQLD 342 (1195)
T ss_pred HHHHhh
Confidence 665443
No 72
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.56 E-value=21 Score=40.07 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh----h------hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH-------
Q 039797 105 RFQIEELQKRELETKMQFARYHD----L------KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE------- 167 (437)
Q Consensus 105 r~lVeeLqERE~~LE~eLLEy~~----L------KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~------- 167 (437)
+..|+-|.+|=..++.++...-. . +++--.-..|.++...-+..+..+..+|.+|++-+..-+
T Consensus 144 q~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~ 223 (629)
T KOG0963|consen 144 QVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLK 223 (629)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555444444333 1 222223445566666667788889999999976554322
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 168 --------NLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKT 201 (437)
Q Consensus 168 --------~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~ 201 (437)
...+++..+..+|+.|..+|..|++.+..+..|.
T Consensus 224 s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 224 SKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999998886654
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.40 E-value=15 Score=38.08 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hhhHhhH---HHHHHHHHhHhhhhHHHHHHHHHHhHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYH------------DLKEQES---LLMELRNMIFLEKSYVELLDREVSSVES 161 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~------------~LKEQea---~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 161 (437)
.-.|-+.++.|++.|++|=..|+...-++- -.+++.+ .+.+...+-.--..|++.|..++..++.
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999888887664443 1122222 2344444445556667777777777777
Q ss_pred HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhh
Q 039797 162 ENKRLENLVV----------------LYLKVLDQLQQWKSESGLLKRKVKKLVR---KTKELSDIIREQNLKI 215 (437)
Q Consensus 162 En~rL~~~v~----------------e~~~v~~ELe~ar~ki~~Lqrk~~~~a~---q~K~q~~~lkqqv~~l 215 (437)
+++-|+..++ +...++.+||.++.++..|++-++.... ....+-..-+.++..|
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666554 4566788999999999999987775432 2233334444444444
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.22 E-value=11 Score=36.16 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 039797 285 ENYRQLLNECEQLQ 298 (437)
Q Consensus 285 e~~~~L~kqvEqLq 298 (437)
.++.-|..+|+.|+
T Consensus 171 ~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 171 EEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555443
No 75
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.21 E-value=14 Score=42.05 Aligned_cols=133 Identities=20% Similarity=0.199 Sum_probs=84.1
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039797 121 QFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRK 200 (437)
Q Consensus 121 eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q 200 (437)
+--|-+.|+|.-+.=..|.+++..-..|++-++..+...++||.||.....++....+.++.-|..+|. +.+.
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~-------e~ke 87 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLRE-------EIKE 87 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 333444455555555556666666666777788888889999999988888877776666654444332 1111
Q ss_pred hHHH-HHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 201 TKEL-SDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 201 ~K~q-~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.|.. .++|.. .+. .|+|- .-++|-...++.=-+|++-|+--+++|++|..-|.-+|+.|-
T Consensus 88 ~K~rE~rll~d-yse---lEeEN----islQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 88 YKFREARLLQD-YSE---LEEEN----ISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHhhh-hHH---HHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112211 122 22221 135566667777779999999999999999999998887664
No 76
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.96 E-value=28 Score=40.11 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVL---DQLQQWKSESGLLKRKV 194 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~---~ELe~ar~ki~~Lqrk~ 194 (437)
+..++..|+.....|.+....+.... .+++.++.+++.+..++
T Consensus 557 l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~ 602 (908)
T COG0419 557 LKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444 55555555555544443
No 77
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.95 E-value=12 Score=36.01 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
-.+...+..+..++..|+.++.+...
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444
No 78
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.94 E-value=10 Score=35.01 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
.++++..++.+++....+++.....+..++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 152 ELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666554
No 79
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.94 E-value=25 Score=39.41 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=39.8
Q ss_pred hHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 216 ESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 216 ~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
+..+..+.....+++.++..+...+.+..+|.|...-.+.--..|..|++.+...
T Consensus 351 ~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 351 QARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445556677777777788888888888888888888888888888655
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=26 Score=40.71 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+..|-..+.|+...+-.|--|+.+|.-+|-..+.
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 4455556666666666666677777777765554
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.63 E-value=15 Score=36.31 Aligned_cols=163 Identities=21% Similarity=0.216 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH-----H
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHD-LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV-----L 172 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~-----e 172 (437)
.++..++..++.....-..|+.++-..+. +.+--.....|++++..-..++.|+..- -+.|..-|+.++. +
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~---heeEi~~L~~~~~~~~~~e 158 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN---HEEEIEELREQIQSSVTVE 158 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTSTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhcccccccee
Confidence 44445555555454555566666666553 3333344567777777777777776541 1222333333332 1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHhhhHH----hHHHhhhhhHHHHhhHHHHHHHHHHHHH
Q 039797 173 YL-KVLDQLQQWKSESGLLKRKVKKLVRKTKELSDII-REQNLKIESA----DAELLRNCDVLEEKSNAIQKLENELKEL 246 (437)
Q Consensus 173 ~~-~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~l-kqqv~~l~~~----E~E~~~~~~e~E~Kl~~l~~LE~Ev~EL 246 (437)
.. .-..+|. ..++.++......+.+++.++... +.++..+... .........++-.--..+..|..++.-|
T Consensus 159 ~~~~~~~dL~---~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l 235 (312)
T PF00038_consen 159 VDQFRSSDLS---AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESL 235 (312)
T ss_dssp --------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccch---hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcc
Confidence 11 0012222 224455555555666665554332 2233333211 1111122223333333466777777777
Q ss_pred HHHhHHHHHHHHHHHHhHHHh
Q 039797 247 HSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 247 rr~nk~LQ~EK~eL~~kL~~A 267 (437)
+..|..|+....+|-..++..
T Consensus 236 ~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 236 RAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHH
Confidence 777777777777776666543
No 82
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.55 E-value=21 Score=37.75 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccc-------cc-hhhhhHHHHHHHHHHHHHHhhh
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTK-------IE-DEGTTMENYRQLLNECEQLQKD 300 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~-------~E-~~~v~~e~~~~L~kqvEqLq~d 300 (437)
.|...+.+++.....|+.+...|...++..+..+..+.. .+ .-.+.+..|+.|....++.+.+
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444443322221 12 2234567788888888888765
No 83
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.53 E-value=31 Score=39.76 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 104 LRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 104 Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
|+..++.+.++...|+..+-.|-.
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555554
No 84
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=6.5 Score=42.93 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=78.3
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKI 215 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l 215 (437)
.+|..+++....+++..+..|..+.+...+|+ .++......|+.+|.|...|.+||-+.+-+ +.+++-.=-.|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik----qeilr~~G~~L 409 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIK----QEILRKRGYAL 409 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCcC
Confidence 57999999999999999999999999999999 788888999999999999999988766221 11222222234
Q ss_pred hHHhHHHhhhhhHHHHhhHHH-HHHHHHHHHHHHHhHHHHHHHHH
Q 039797 216 ESADAELLRNCDVLEEKSNAI-QKLENELKELHSVIDQLQEQNSE 259 (437)
Q Consensus 216 ~~~E~E~~~~~~e~E~Kl~~l-~~LE~Ev~ELrr~nk~LQ~EK~e 259 (437)
...|+ ++..|++.| +.|..= .|++++...|...-+-
T Consensus 410 ~~~EE-------~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 410 TPDEE-------ELRAKLDTLLAQLNAP-NQLKARLDELYEILRM 446 (508)
T ss_pred CccHH-------HHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHh
Confidence 44444 445555533 233333 7788888877766543
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.79 E-value=24 Score=37.21 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=32.8
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRL-----ENLVVLYLKVLDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL-----~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
.....|+.++..-..+++....++.....+|.-. ..-...+..+..++..++.++..++.++....
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555444321 11223334444455555555555555444443
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.65 E-value=42 Score=39.68 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHhhhhhhHhhHHHHHHHHHhHhhhhHH----HHHHHHHHhHHHHHHHHHHHHHH
Q 039797 104 LRFQIEELQKRELET-------KMQFARYHDLKEQESLLMELRNMIFLEKSYV----ELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 104 Lr~lVeeLqERE~~L-------E~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei----~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
||..|+.|.|+=..| ...|+|+..+|=|---++|...++-.+.+.+ ..-+.....+++=..++..++++
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765555 4578888888888777777777665544432 22223333344334444444443
Q ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhhhH------
Q 039797 173 YLK------------------VLDQLQQWKSESGLLKRKVKKLVR-----------KTKELSDIIREQNLKIES------ 217 (437)
Q Consensus 173 ~~~------------------v~~ELe~ar~ki~~Lqrk~~~~a~-----------q~K~q~~~lkqqv~~l~~------ 217 (437)
+.. +.-|++.++.++.+|.--+..+.. .+--|..-|-+|+.+|..
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 332 233444555555554443332211 222333444555555432
Q ss_pred ----HhHH-HhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 218 ----ADAE-LLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 218 ----~E~E-~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
.+.. .-+-..++|+|-.-+.+|..-.+-|.|....++....+|..+.|+|
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 2255667777777777777777777777777777777888888876
No 87
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.58 E-value=23 Score=36.64 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 039797 281 GTTMENYRQLLNECEQLQKD 300 (437)
Q Consensus 281 ~v~~e~~~~L~kqvEqLq~d 300 (437)
..++..|+.|....++.+-.
T Consensus 352 ~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 352 ENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888777654
No 88
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=24 Score=39.32 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhh----HHHHH-----------------HHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKS----YVELL-----------------DRE 155 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~----Ei~~L-----------------~~k 155 (437)
...|+.-||++..+++ ++.|+++--.. +....|.+|..||-.+-+ +=..| .++
T Consensus 241 ~~~e~~llr~t~~~~e---~riEtqkqtl~---ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~ 314 (654)
T KOG4809|consen 241 TKEEQFLLRSTDPSGE---QRIETQKQTLD---ARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERI 314 (654)
T ss_pred HHHHHHHHHhcCchHH---HHHHHHHhhhh---hHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHH
Confidence 3456666666666654 45666654433 344456666666654321 11111 133
Q ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH----hHHHhhhhhHHH
Q 039797 156 VSSVESENKRLE-NLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESA----DAELLRNCDVLE 230 (437)
Q Consensus 156 I~sLEsEn~rL~-~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~----E~E~~~~~~e~E 230 (437)
|..|-....|=+ +...++..-.+++...+.++..||+ +.....+++.-+++..+.|.+. ..+....+..+|
T Consensus 315 IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~----~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 315 IERLKEQRERDERERLEEIESFRKENKDLKEKVNALQA----ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 444433332222 2222333334444444444444444 2223345566667766666443 223333444555
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHhHHHhhhhcccccccchhhh-hH-HHHHHHHHHHHHHhhhh
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQ--EQNSELLNKLQEWHQSASSVTKIEDEGT-TM-ENYRQLLNECEQLQKDR 301 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ--~EK~eL~~kL~~Ae~~~~s~~~~E~~~v-~~-e~~~~L~kqvEqLq~dR 301 (437)
.|...+.+||...+--....++-- -+-.++...|+-+- +++.. +...+ +. -.+-.+++|||++++|-
T Consensus 391 qkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~---~~y~d-e~~kaqaevdrlLeilkeveneKnDk 461 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEA---SYYRD-ECGKAQAEVDRLLEILKEVENEKNDK 461 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 555555565554433222221111 12223333343222 12210 11111 11 12235889999998874
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=30 Score=40.28 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=27.5
Q ss_pred hhhh-hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 125 YHDL-KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 125 y~~L-KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
|||| ++|...+..|+.+.+.-+.|.+.|+-++..+.++...|.+++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~ 708 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL 708 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655 666666666666666666666666666655555554444443
No 90
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.44 E-value=48 Score=40.01 Aligned_cols=13 Identities=46% Similarity=1.025 Sum_probs=7.2
Q ss_pred CCCCCCC-cccCCC
Q 039797 345 GGIGDYG-IEQHLD 357 (437)
Q Consensus 345 g~~~e~~-~e~~~s 357 (437)
|..||-| ||..++
T Consensus 620 GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 620 GRLGDLGAIDEKYD 633 (1293)
T ss_pred cccccccccchHHH
Confidence 5666665 454443
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.40 E-value=15 Score=34.01 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVR---KTKELSDIIREQN 212 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~---q~K~q~~~lkqqv 212 (437)
...++.|+.-..+.+.|..+|.+|+.+..-.+.. ...+..+.+.++..|.-|+.++...+. +-...+..++...
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~---~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQEN---KECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999997776653 334556667777777777776665432 2233333333211
Q ss_pred HhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 213 LKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 213 ~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
. .-..+++++-..|.+||.-...+++....+..++..+...+
T Consensus 83 ~----------~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~ 124 (140)
T PF10473_consen 83 E----------NLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEES 124 (140)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11124445555566676666666666666666654444433
No 92
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.37 E-value=3.6 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=11.5
Q ss_pred HHHHHhHHHHHHHHHHHHhH
Q 039797 245 ELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 245 ELrr~nk~LQ~EK~eL~~kL 264 (437)
-+...+..|+.||.+|+.|+
T Consensus 162 ~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666665
No 93
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.14 E-value=61 Score=40.77 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH-----------
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE----------- 167 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~----------- 167 (437)
.+..++-.-+++|+++=..|+.++. -|++.+....+++......+..|+.|+.+-.
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~-------------plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k 1302 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELA-------------PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK 1302 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555544 4445555555555555555555555543322
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039797 168 --------NLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKI 215 (437)
Q Consensus 168 --------~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l 215 (437)
....++..+.++|+.....|-+|..++....++.+.++..+.....-+
T Consensus 1303 ~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~l 1358 (1822)
T KOG4674|consen 1303 DSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANL 1358 (1822)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222234444555555555566666666666666666665555444443
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.13 E-value=30 Score=37.26 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 232 KSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 232 Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
..+.+..|.....+|...-..+.-|+.+|...+
T Consensus 159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566655555666666555444
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.03 E-value=40 Score=38.44 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred hHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccccccc-chhhhhHH----HHHHH
Q 039797 216 ESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKI-EDEGTTME----NYRQL 290 (437)
Q Consensus 216 ~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~-E~~~v~~e----~~~~L 290 (437)
+..|.|+.+...|+..|-..+..||.++.+||..+++=+.+-..|.--|.+.+.....+-+. -.+...+. ..-+-
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~a 627 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDA 627 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44456666666677777777888888888888776555555666666666666542222111 11222222 33466
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 039797 291 LNECEQLQKDRAAEAKELI 309 (437)
Q Consensus 291 ~kqvEqLq~dR~seVEELV 309 (437)
.+|+|.++.-.-.-=.|++
T Consensus 628 krq~ei~~~~~~~~d~ei~ 646 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIE 646 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888877766554444444
No 96
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=40 Score=38.52 Aligned_cols=223 Identities=19% Similarity=0.186 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHHhH---hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLK---EQESLLMELRNMIF---LEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LK---EQea~v~ELe~~L~---~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
...|++.|+..+..+.+.|..=-.+.-.=..++ +.....-+|+.-.+ .--+|...-.-.++-+|++|.+|-.++
T Consensus 398 a~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el 477 (698)
T KOG0978|consen 398 ARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQEL 477 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888777665433222222222 44444555554444 334666667778888999999988776
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhhHHhHHHh----hhhhHHHHhhHHHHHH
Q 039797 171 VL----YLKVLDQLQQWKSESGLLKRKVKKLVRKT---KELSDIIREQNLKIESADAELL----RNCDVLEEKSNAIQKL 239 (437)
Q Consensus 171 ~e----~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~---K~q~~~lkqqv~~l~~~E~E~~----~~~~e~E~Kl~~l~~L 239 (437)
.+ +.++..+...+..+++.|.........+. +.+...+...+..|+.++.-.. ..-.++....+++..+
T Consensus 478 ~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~ 557 (698)
T KOG0978|consen 478 REKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEML 557 (698)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH
Confidence 54 55677788888888888887777665433 4444444444444444333221 2223555556666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccc-cccchh----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039797 240 ENELKELHSVIDQLQEQNSELLNKLQEWHQSASSV-TKIEDE----GTTMENYRQLLNECEQLQKDRAAEAKELIYLRWA 314 (437)
Q Consensus 240 E~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~-~~~E~~----~v~~e~~~~L~kqvEqLq~dR~seVEELVYLRWv 314 (437)
=..+.++.+....||.+......+|...+.+.+-. ...+.. -.+.++...|-+-++.+++.=- .--.
T Consensus 558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~--------~~s~ 629 (698)
T KOG0978|consen 558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES--------GASA 629 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------cccc
Confidence 67777777888888888887777777766542211 111211 1245777788888888776432 1112
Q ss_pred HHHHHHHHHhhhh
Q 039797 315 NACLRHELMRNQA 327 (437)
Q Consensus 315 NACLR~ELrn~~~ 327 (437)
..=|.-||++|.+
T Consensus 630 d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 630 DEVLAEELKEYKE 642 (698)
T ss_pred cHHHHHHHHHHHh
Confidence 2346677777766
No 97
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.96 E-value=53 Score=39.78 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 039797 242 ELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 242 Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
++.+|...+..||..+..|.
T Consensus 582 ~~~~~~d~l~~le~~k~~ls 601 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLS 601 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 55566666666666655444
No 98
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.95 E-value=1 Score=50.17 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYH-DLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
..++..|...+..|+..-..+..++.+|. .++.....+..||++..+-.-|++.|+.-+.++..|.....
T Consensus 363 ~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~ 433 (722)
T PF05557_consen 363 QSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMN 433 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 45666666666666665555655555553 34555667778888888888888888888888887766554
No 99
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.65 E-value=24 Score=40.22 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 131 QESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKT 201 (437)
Q Consensus 131 Qea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~ 201 (437)
|+.+..+++.++..-..+.+.--.++..++.+.+.|++.... +.+.++.++.+-+.|.+|++...+..
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK---LAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888778888888887777644433 34567888888777887777665433
No 100
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.61 E-value=16 Score=37.59 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=34.4
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
|.+.++.|.+|..|| .++.=.=+|+|=.|.++|++ |-.||.+|+-|+.=|.+
T Consensus 84 l~dRetEI~eLksQL---------~RMrEDWIEEECHRVEAQLA--------LKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 84 LHDRETEIDELKSQL---------ARMREDWIEEECHRVEAQLA--------LKEARKEIKQLKQVIET 135 (305)
T ss_pred HHhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 445667777777776 45555556777777777765 45688888887764443
No 101
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.51 E-value=41 Score=37.83 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhh-hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFAR---YHDL-KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLE---y~~L-KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..|+..|+.-++.|.++ |+.++-+ +--| ++|+..+.+||..|.....+......-++.|++++.-..-.+++
T Consensus 85 Lq~E~~~L~kElE~L~~q---lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQ 161 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQ---LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQ 161 (617)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHh
Confidence 455677777777777643 2223222 2222 68899999999998877777666666677777777666655555
Q ss_pred HHHHHHHHHHH
Q 039797 173 YLKVLDQLQQW 183 (437)
Q Consensus 173 ~~~v~~ELe~a 183 (437)
-..++.+|...
T Consensus 162 N~eLK~QL~El 172 (617)
T PF15070_consen 162 NRELKEQLAEL 172 (617)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 102
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=33 Score=39.99 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=46.4
Q ss_pred hHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccccccc---chhh----hhHHHHH
Q 039797 216 ESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKI---EDEG----TTMENYR 288 (437)
Q Consensus 216 ~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~---E~~~----v~~e~~~ 288 (437)
+....+..+.-.++++++......-..+..|.-+++-+-.++.....||..-...++...|. ..+. .+..+++
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Confidence 33344444444566666666777777777777777666666666666666555444433221 1110 1233455
Q ss_pred HHHHHHHHHhh
Q 039797 289 QLLNECEQLQK 299 (437)
Q Consensus 289 ~L~kqvEqLq~ 299 (437)
.|.+.|++-.+
T Consensus 889 ~l~ka~~~~k~ 899 (970)
T KOG0946|consen 889 TLSKALKTVKS 899 (970)
T ss_pred HHHHHHHHhhc
Confidence 56666666555
No 103
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=89.37 E-value=24 Score=34.92 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 93 DKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 93 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
++.++..++..++..+..++..-..++.. +..++.++......++.....+...+.+-+|.+.....
T Consensus 74 d~~~~~~~l~~a~a~l~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 74 DPTNAELALAKAEANLAALVRQTKQLEIT-------------VQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 45556677777777776666544444433 22344444444555555555666666677777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKV 194 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~ 194 (437)
......+++.++......+..+
T Consensus 141 g~is~~~~~~a~~~~~~a~~~l 162 (334)
T TIGR00998 141 GLISREELDHARKALLSAKAAL 162 (334)
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 6666677777766655544443
No 104
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.14 E-value=0.12 Score=57.56 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHh
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKV----LDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELL 223 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v----~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~ 223 (437)
+...+..++..|+.|+.++.+...++..- ..++...+.++..|..... .+..-|-++.+++....++...|.++.
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve 318 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777776665555322 2233333444444433222 233335566777776666666666553
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHH
Q 039797 224 RNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAA 303 (437)
Q Consensus 224 ~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~s 303 (437)
+ ..+|+..+.+|...|.+|+-.|..|...+..|-..|..+.+. +..+..+.+||-.|+..+..
T Consensus 319 ~----YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~-------------~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 319 K----YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARAL-------------KSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 2 335777677777777777777777666666665555433221 12223455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039797 304 EAKELIYLRWANACLRHEL 322 (437)
Q Consensus 304 eVEELVYLRWvNACLR~EL 322 (437)
+-.+.-+|.+=|.=|+.++
T Consensus 382 ~~~~~~~l~~e~~~L~ek~ 400 (713)
T PF05622_consen 382 ESRRADKLEFENKQLEEKL 400 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555444444344333
No 105
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.14 E-value=72 Score=40.19 Aligned_cols=29 Identities=21% Similarity=0.050 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039797 289 QLLNECEQLQKDRAAEAKELIYLRWANAC 317 (437)
Q Consensus 289 ~L~kqvEqLq~dR~seVEELVYLRWvNAC 317 (437)
....-+||+.+.|..+-|+++-.+=.++=
T Consensus 1480 ~~~~~le~~k~e~~~e~e~~~~~~~~~~~ 1508 (1822)
T KOG4674|consen 1480 SKSENLEGTKKELESEKEELKQRLTELAA 1508 (1822)
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35578899999999999999988776654
No 106
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.10 E-value=28 Score=35.40 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 138 LRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVR 199 (437)
Q Consensus 138 Le~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~ 199 (437)
++++|......|+.+..++.+++.++.+++..+.. +..+|+..+..|+..+..+..-+|
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~---l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK---LQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333 244555555555555554444433
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.97 E-value=24 Score=34.37 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
.++.||.-....=.....++...+.|..+|..|+.+
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555566666666655554
No 108
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.97 E-value=23 Score=40.16 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
..+..+...|......++.......+++.++..|++.+.
T Consensus 182 ~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 182 SDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 334444444444444444444444445555555554444
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=38 Score=39.44 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHH----HHHHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDL-----KEQESLLMELRNMIFLEKSYVELLDREVSSVESENK----RLENL 169 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L-----KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~----rL~~~ 169 (437)
-||++--..=++| ||-..||.+-..-..| +||+-++. |....+--..|++-|+.++-.|..-.. ++..+
T Consensus 393 keie~rEaar~El-EkqRqlewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~ 470 (1118)
T KOG1029|consen 393 KEIERREAAREEL-EKQRQLEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQ 470 (1118)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchH
Confidence 4555544444454 3445555554444444 56665544 555555556666777776655543221 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHH-HHHHH----------HHHhhhH-----------HhHH
Q 039797 170 VVLYLKVLDQLQQWKSESGLLKRKVKKLVRKT------KELS-DIIRE----------QNLKIES-----------ADAE 221 (437)
Q Consensus 170 v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~------K~q~-~~lkq----------qv~~l~~-----------~E~E 221 (437)
-.++..+.++.+...+.|..|+.+|+..-+.. |+.+ .-|++ +++.|.+ ....
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdq 550 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQ 550 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554332211 0000 11111 1222211 1111
Q ss_pred HhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 222 LLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLN 262 (437)
Q Consensus 222 ~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~ 262 (437)
.....-|++.|++.+.-+-+.+.|||....-+|..+++|-.
T Consensus 551 ldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122366677887888888999999988888888877755
No 110
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.72 E-value=41 Score=36.81 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhHHHHHH----HHHHHHhhhHHhHHHhhhhhHHHHh-hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 039797 189 LLKRKVKKLVRKTKELSDI----IREQNLKIESADAELLRNCDVLEEK-SNAIQKLENELKELHSVIDQLQEQNSELLNK 263 (437)
Q Consensus 189 ~Lqrk~~~~a~q~K~q~~~----lkqqv~~l~~~E~E~~~~~~e~E~K-l~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~k 263 (437)
.|+.+-++-..++++.+.. +++++..++.+ ..++++. .+.-..|..++..|...|.++..|-..|+.=
T Consensus 122 ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~-------v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~A 194 (475)
T PRK10361 122 IFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQ-------VQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRA 194 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555433 35665555533 2233322 3334678899999999999999999999987
Q ss_pred HH
Q 039797 264 LQ 265 (437)
Q Consensus 264 L~ 265 (437)
|-
T Consensus 195 Lk 196 (475)
T PRK10361 195 LK 196 (475)
T ss_pred Hc
Confidence 74
No 111
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.70 E-value=33 Score=35.67 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039797 102 LNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 102 ~~Lr~lVeeLqERE~~LE~eLL 123 (437)
+.|+..|.+|+..=..|+.+|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~ 44 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELE 44 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 6778888888776555555553
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=8.3 Score=43.18 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
+..|+.+...-..+++.+.++|+.|+++-.++...+..-.....++++...+|..|++
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444444333333333433334444333
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.42 E-value=11 Score=36.66 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk 193 (437)
...+..|..|+.+|.+|.+++.. +..+++.++.++..+++.
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~---~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIV---AQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33566677788888888655544 344444444444444443
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.30 E-value=3.3 Score=39.04 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 232 KSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 232 Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
-...+++|+.++.|+.+.|..|+.|---|...+..++.++
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778999999999999999999888888887776543
No 115
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.08 E-value=31 Score=37.66 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=10.6
Q ss_pred CCchhHHHHhhhhhcC
Q 039797 379 SKRSRLLKRLKRWVDG 394 (437)
Q Consensus 379 SKK~~Li~KLKkWv~g 394 (437)
.-+..+...|+++..|
T Consensus 478 ~~~~~~~~~l~~l~~~ 493 (563)
T TIGR00634 478 ETAQAIAKKLAQLSER 493 (563)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3456777888887543
No 116
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.07 E-value=1.4 Score=37.31 Aligned_cols=74 Identities=26% Similarity=0.225 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhh------------hhHHHHHHHHHHhHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLE------------KSYVELLDREVSSVES 161 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k------------~~Ei~~L~~kI~sLEs 161 (437)
......|+..|+..+..|+..-..+.++=|+-+.++| +..||.+|... ..+|+.|..++..|+.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e----L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE----LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345689999999999999999999988888777443 56666665432 4466677777777777
Q ss_pred HHHHHHHHHH
Q 039797 162 ENKRLENLVV 171 (437)
Q Consensus 162 En~rL~~~v~ 171 (437)
+|..|+.+++
T Consensus 90 en~~L~~~~~ 99 (100)
T PF01486_consen 90 ENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.96 E-value=33 Score=34.88 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=31.8
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
+.-|++.+.+++.....-..+|+.|.-+|+.+...-..+++++.+ ...++...+.+|..|...|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~---~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQ---SKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554444443332 23344444444444444443
No 118
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.80 E-value=68 Score=38.28 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL---- 172 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e---- 172 (437)
+..||++|++-|...+++.=-.-. +..+...+.+...+...|+.+..+|..++.+-..|++...-
T Consensus 409 ~~~EIerLK~dl~AaReKnGvyis-----------ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~ 477 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKNGVYIS-----------EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEI 477 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhCceEec-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 789999999999888776432211 11122344444555555666666666666666666554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQ 252 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~ 252 (437)
...+.++++..+.++..--..+. -.+..+.-++ ..|. .+.++.......|.++. .-...||+.+..
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~----~~~ee~~~~~---~~l~-~~e~ii~~~~~se~~l~------~~a~~l~~~~~~ 543 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELE----SLKEELQQAK---ATLK-EEEEIISQQEKSEEKLV------DRATKLRRSLEE 543 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 22333333333333221111111 1111111111 1111 12223333333333333 338899999999
Q ss_pred HHHHHHHHHHhHHHhhh
Q 039797 253 LQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 253 LQ~EK~eL~~kL~~Ae~ 269 (437)
-|...+.|..||+.-..
T Consensus 544 s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 544 SQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHhhhhhc
Confidence 99999999999986654
No 119
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.62 E-value=27 Score=35.73 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=55.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLE 230 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E 230 (437)
.+.++...|..++..++.+..-...++..|+.. ||+||+.-+...+.++.. ...+. .+..++-
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~L---CRELQk~Nk~lkeE~~~~-----------~~eee---~kR~el~ 109 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESL---CRELQKQNKKLKEESKRR-----------AREEE---EKRKELS 109 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHH---HHHHHHH
Confidence 344455555555555555555444444444433 556665444443333332 21111 1223334
Q ss_pred HhhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 231 EKSN-AIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 231 ~Kl~-~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
.+.+ .|.++..-+.+=...|..+-.+|..|..||.+-
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSL 147 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 4433 577777888888888888888888888888744
No 120
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=87.17 E-value=11 Score=39.22 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESA 218 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~ 218 (437)
|...-..|+.+..++.+++.++...+.++|.. |-+|+-...+.=|+.|+-|++++...+..
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~------L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHEED------LYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 34444556777777888888888888888777 88888888888888888888877666643
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=86.36 E-value=51 Score=36.16 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.7
Q ss_pred HHHHHH
Q 039797 289 QLLNEC 294 (437)
Q Consensus 289 ~L~kqv 294 (437)
.|.+++
T Consensus 158 ~l~~~~ 163 (520)
T PRK12704 158 ILLEKV 163 (520)
T ss_pred HHHHHH
Confidence 344444
No 122
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.14 E-value=70 Score=36.74 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=26.3
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHhHH
Q 039797 224 RNCDVLEEKSNAIQKLENELKELHS-------VIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 224 ~~~~e~E~Kl~~l~~LE~Ev~ELrr-------~nk~LQ~EK~eL~~kL~ 265 (437)
....++.++.+.++-||..+.-||+ ...+||.+|--|-.+..
T Consensus 577 ~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 577 SIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666665 34667777777766653
No 123
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.11 E-value=50 Score=34.96 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=13.2
Q ss_pred chhhhhcch-hHHHHHhHHHHHHHhcccC
Q 039797 13 KPVLLKAGV-PLAISVAGFICAKMMARKD 40 (437)
Q Consensus 13 kp~~lk~g~-~lalS~ag~i~ar~~~r~~ 40 (437)
+|-|.++.+ +|++-|+||++.=++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~WA~~~~~~ 44 (457)
T TIGR01000 16 YHNFSTLVIVPIFLLLVFLVLFSLFAKKE 44 (457)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhEeee
Confidence 344445443 4555555544433345544
No 124
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.07 E-value=54 Score=35.95 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=3.3
Q ss_pred hhHHHHhhH
Q 039797 226 CDVLEEKSN 234 (437)
Q Consensus 226 ~~e~E~Kl~ 234 (437)
...++++.+
T Consensus 96 ~e~Lekre~ 104 (514)
T TIGR03319 96 MESLDKKEE 104 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.06 E-value=71 Score=36.72 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEEL 111 (437)
Q Consensus 99 ~EI~~Lr~lVeeL 111 (437)
.||..|+..+...
T Consensus 265 ~EiqKL~qQL~qv 277 (717)
T PF09730_consen 265 SEIQKLKQQLLQV 277 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 4577777765555
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.06 E-value=83 Score=37.52 Aligned_cols=144 Identities=23% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHH-HHhh-hhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 108 IEELQKRELETKMQ-FARY-HDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKS 185 (437)
Q Consensus 108 VeeLqERE~~LE~e-LLEy-~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ 185 (437)
|+-|.+=|...=.. |+.| +.|.++...-..|+.-+.-++.-+..|...|..|+-+-+++ .|.+.-++
T Consensus 161 i~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~-----------rer~~~~~ 229 (1072)
T KOG0979|consen 161 IELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV-----------RERERKKS 229 (1072)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 44555556666555 7766 56888888888888887666665555555555555444443 35566677
Q ss_pred HHHHHHHHHH-HHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 186 ESGLLKRKVK-KLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 186 ki~~Lqrk~~-~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
+|+.|..+.. ...++-...+-.+++-+-++........+--..++ ....+||.++.|++...+..+.+-++-..|+
T Consensus 230 ~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~---~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~ 306 (1072)
T KOG0979|consen 230 KIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE---DKKEELESEKKETRSKISQKQRELNEALAKV 306 (1072)
T ss_pred HHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777754433 22233333333333322222222221111111222 2345777777777777777777766555554
Q ss_pred H
Q 039797 265 Q 265 (437)
Q Consensus 265 ~ 265 (437)
.
T Consensus 307 ~ 307 (1072)
T KOG0979|consen 307 Q 307 (1072)
T ss_pred H
Confidence 3
No 127
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=86.04 E-value=41 Score=33.93 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
++......+...+.+-+|.+...........+++.++......+.
T Consensus 122 ~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~ 166 (346)
T PRK10476 122 QVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEV 166 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 344444444455555566666665555556666666655544443
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.99 E-value=37 Score=33.39 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
.++|..++++|..|+.+..+-++.+....--..+.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998888776665544444444
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.97 E-value=83 Score=37.74 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039797 282 TTMENYRQLLNECEQLQKDRAAEAKELIYL 311 (437)
Q Consensus 282 v~~e~~~~L~kqvEqLq~dR~seVEELVYL 311 (437)
+.+.+.+++-+++++|+.+..+-+.++--.
T Consensus 811 ~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 811 RWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 345677889999999999887766665443
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.88 E-value=65 Score=36.11 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
++++..-++++|+....+|+..+.-+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~ 278 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKF 278 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHH
Confidence 44444444444444444444444333
No 131
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.84 E-value=60 Score=37.52 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
+.++..+++.+..|++|=.-++-+|--- ++ -..++++|..|.-.+.+.-+-..+-...++-..+|..++.+. .
T Consensus 104 da~lrq~eekn~slqerLelaE~~l~qs--~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~---n 176 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERLELAEPKLQQS--LR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEEL---N 176 (916)
T ss_pred chhhchhHHhhhhhhHHHHHhhHhhHhH--Hh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---H
Confidence 3567778888888888766666555433 23 445778888887777777777777777776666666665543 4
Q ss_pred HHHHHHHHHHH
Q 039797 178 DQLQQWKSESG 188 (437)
Q Consensus 178 ~ELe~ar~ki~ 188 (437)
.||..|+-+.+
T Consensus 177 aeL~rarqree 187 (916)
T KOG0249|consen 177 AELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHH
Confidence 56666654433
No 132
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.77 E-value=66 Score=36.07 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 111 LQKRELETKMQFARYHDLKEQ-ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 111 LqERE~~LE~eLLEy~~LKEQ-ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
|+++-.+|+.-.-.|-.-=.| ...-+.+++-|.-.++||+.-..+++.|+++|..|+.+|.
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444332222 2223456666666677777777777777777777776653
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.60 E-value=36 Score=32.83 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.2
Q ss_pred HHHHHHHhHh
Q 039797 135 LMELRNMIFL 144 (437)
Q Consensus 135 v~ELe~~L~~ 144 (437)
|.+|+|+|..
T Consensus 14 i~~L~n~l~e 23 (194)
T PF15619_consen 14 IKELQNELAE 23 (194)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.46 E-value=69 Score=36.06 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh-HHHHHHHHHhHhhh---------------hHHH-HHHHHHHhHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQE-SLLMELRNMIFLEK---------------SYVE-LLDREVSSVESEN 163 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQe-a~v~ELe~~L~~k~---------------~Ei~-~L~~kI~sLEsEn 163 (437)
...|+.-...+++|-..|-.++-.+..=|++. ..|.+|++.|..-. ++.+ .|...+..|+.|.
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kEl 96 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKEL 96 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444333322 23445555443221 2222 3444555555555
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 039797 164 KRLENLVVLYLKVLDQL----QQWKSESGLLKRKVKKLVRKT 201 (437)
Q Consensus 164 ~rL~~~v~e~~~v~~EL----e~ar~ki~~Lqrk~~~~a~q~ 201 (437)
..|..++.....-...| ..-..++.+|++++.......
T Consensus 97 E~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 97 ESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333322222222 334556666776666554443
No 135
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.44 E-value=75 Score=36.43 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHHHhHhhhhHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYH-DLKEQESLLMELRNMIFLEKSYVELLDRE 155 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQea~v~ELe~~L~~k~~Ei~~L~~k 155 (437)
...|+.+-+.+..+|..|+-++++-- .+++-...+-+|-+.+..+.++..-|..+
T Consensus 107 ~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k 162 (716)
T KOG4593|consen 107 LTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNK 162 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666778888888888888877 66666666666666666666666555543
No 136
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.06 E-value=15 Score=30.34 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV----LYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~----e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
.-.||..+...-..|..|.++|..|..+|..|.++-. +...++.+...|..+|+.|=.|++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777777777777777777777777777663332 223334555666666665555443
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.04 E-value=65 Score=35.38 Aligned_cols=14 Identities=50% Similarity=0.591 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEE 110 (437)
Q Consensus 97 ~~~EI~~Lr~lVee 110 (437)
.+.+|..|+..+..
T Consensus 254 i~~~i~~l~~~i~~ 267 (569)
T PRK04778 254 IEKEIQDLKEQIDE 267 (569)
T ss_pred hHHHHHHHHHHHHH
Confidence 45566666655555
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.85 E-value=51 Score=33.97 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHhhHHHHHHHHHh
Q 039797 101 ILNLRFQIEELQKRELETKMQ--------FARYHDLKEQESLLMELRNMI 142 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~e--------LLEy~~LKEQea~v~ELe~~L 142 (437)
...|+.-|.+=+.--..++.+ |-|||..=+-.- ..|.+++
T Consensus 72 C~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r--~lm~~Qf 119 (312)
T smart00787 72 CKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVK--LLMDKQF 119 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHH--HHHHHHH
Confidence 445666666666655666655 458887543333 3344444
No 139
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.69 E-value=42 Score=37.31 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHhhHHH----HHHHHH--hHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDL--KEQESLL----MELRNM--IFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L--KEQea~v----~ELe~~--L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
+.-++.-+..|-.|+ -|.....+||..|.- .|.++.. +---|. -....--.+.|..++..+++||.+|+..
T Consensus 103 eEqv~~~~d~vvql~-hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k 181 (596)
T KOG4360|consen 103 EEQVDAPWDRVVQLG-HELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSK 181 (596)
T ss_pred HhhhcchHHHHHHhh-hhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 334555555554443 466777888888853 2332110 000000 1111133577899999999999999977
Q ss_pred HHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 039797 170 VVLY---------------LKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 170 v~e~---------------~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
+..+ ..++++|..+..+++-++.-++.
T Consensus 182 ~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~ 223 (596)
T KOG4360|consen 182 AMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQS 223 (596)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 35677777666666666444433
No 140
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.19 E-value=69 Score=34.98 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=15.9
Q ss_pred chhhhhcchhHHHHHhHHHHHHHhcccC
Q 039797 13 KPVLLKAGVPLAISVAGFICAKMMARKD 40 (437)
Q Consensus 13 kp~~lk~g~~lalS~ag~i~ar~~~r~~ 40 (437)
.|+=|--.-...-|||.+.||--+++.+
T Consensus 16 ~p~rLqGssss~as~adglla~T~s~ps 43 (502)
T KOG0982|consen 16 PPMRLQGSSSSSASVADGLLAETRSRPS 43 (502)
T ss_pred CccccCCCccCCCCcccchhhhccCCCC
Confidence 4555542233445677777776666655
No 141
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.00 E-value=58 Score=33.93 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.-...|-|...+|+.||-+|...|..=+
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456677788888889988888886543
No 142
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.57 E-value=42 Score=32.05 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=64.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEE 231 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~ 231 (437)
|...+..|++|..|-.........++++|+.++..|..|..-+.+....-..--.-|..+-..+...+.-+.. ... .
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~-y~~--~ 138 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ-YLS--S 138 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhc--c
Confidence 4447889999999999988889999999999999999999877765443322111222222333322222211 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHH
Q 039797 232 KSNAIQKLENELKELHSVIDQLQEQ 256 (437)
Q Consensus 232 Kl~~l~~LE~Ev~ELrr~nk~LQ~E 256 (437)
--..+=.|=-+|+-+||...+|...
T Consensus 139 eh~rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 139 EHSRLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123556667888888888777654
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.51 E-value=83 Score=35.35 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=12.0
Q ss_pred cchhHHHHHhHHHHHHHhc
Q 039797 19 AGVPLAISVAGFICAKMMA 37 (437)
Q Consensus 19 ~g~~lalS~ag~i~ar~~~ 37 (437)
+++.+++.++|++|+.+.+
T Consensus 21 ~~~~~~~~~~a~~~~~~~~ 39 (754)
T TIGR01005 21 ALFVLVVTGLGAAYASFAT 39 (754)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 4566666667777775544
No 144
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.43 E-value=1.3e+02 Score=37.46 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSES 187 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki 187 (437)
.++..+..++..++.+...++.++..|......++.|+.=+
T Consensus 390 eeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444555555555555555555544
No 145
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.14 E-value=58 Score=33.29 Aligned_cols=125 Identities=17% Similarity=0.293 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHhHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HH--HHHH--HHHHHhhh
Q 039797 145 EKSYVELLDREVSSVESEN-KRLE-NLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTK--EL--SDII--REQNLKIE 216 (437)
Q Consensus 145 k~~Ei~~L~~kI~sLEsEn-~rL~-~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K--~q--~~~l--kqqv~~l~ 216 (437)
++.-++.|-.-|.-|+.-+ +.|. +.+.+...++..|+.|+-++.=|+.++...+...+ .+ .+.. ......+.
T Consensus 124 RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 124 RSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666533 4444 66777788888888888888888877776543211 11 1111 11222233
Q ss_pred HHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 217 SADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 217 ~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
..+.|+.....++.++-+.++++-..+.|+|....+|+++-..|...+..+..
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433444455555556666666666666666666666666666655554
No 146
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.06 E-value=49 Score=32.36 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 103 NLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQ 182 (437)
Q Consensus 103 ~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ 182 (437)
.|-..|+.|+---.+|..+ +--|+-+.-.+-+.=.+ |...|..|.-+-+-++-.+-.+..+.+||+-
T Consensus 5 dL~~~v~dL~~~n~~L~~e---n~kL~~~ve~~ee~na~----------L~~e~~~L~~q~~s~Qqal~~aK~l~eEled 71 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADE---NAKLQRSVETAEEGNAQ----------LAEEITDLRKQLKSLQQALQKAKALEEELED 71 (193)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666555555543 22333333223333223 3333333333333444455556666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 039797 183 WKSESGLLKRKVKKLVRKTKE 203 (437)
Q Consensus 183 ar~ki~~Lqrk~~~~a~q~K~ 203 (437)
+|.-++.|+..-..+..++++
T Consensus 72 Lk~~~~~lEE~~~~L~aq~rq 92 (193)
T PF14662_consen 72 LKTLAKSLEEENRSLLAQARQ 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666555543
No 147
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=82.76 E-value=2.3 Score=38.85 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=36.6
Q ss_pred hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 129 KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 129 KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
+.-|+.+.+||.++..|.+||..|+.++..+...|.+|...
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33478899999999999999999999999999999998753
No 148
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.55 E-value=82 Score=34.62 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 039797 155 EVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIE 216 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~ 216 (437)
++...++.+..+..++..+-.+.+.-..|+..+.....++.....+.+++...+......+.
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666666666655555444
No 149
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.37 E-value=13 Score=41.47 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=69.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
..+.+.+=.+||.-+++++.||.+| |-+|-.|.|-...++..=.-|.-..+|.+-|.-.|..|++|..=|-.++.+.
T Consensus 144 ~~~~E~qR~rlr~elKe~KfRE~Rl---lseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 144 NAAVEDQRRRLRDELKEYKFREARL---LSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788999999999999998 6788888888887887777888888999999999999999988887777665
Q ss_pred HHH----HHHHHHH
Q 039797 174 LKV----LDQLQQW 183 (437)
Q Consensus 174 ~~v----~~ELe~a 183 (437)
..+ -.|||.|
T Consensus 221 ~~Lk~IAekQlEEA 234 (772)
T KOG0999|consen 221 IRLKEIAEKQLEEA 234 (772)
T ss_pred HHHHHHHHHHHHHH
Confidence 544 3455554
No 150
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.63 E-value=1.2e+02 Score=35.87 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhH----HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHH----HHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQES----LLMELRNMIFLEKSYVELLDREVSSVESENK----RLENL 169 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea----~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~----rL~~~ 169 (437)
+..+..=|.++..++.+=..|+++|-+--.+.++.. .++....+|.+...+.+.-...++.++-.+- |.++.
T Consensus 350 ~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~kl 429 (980)
T KOG0980|consen 350 ENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKL 429 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444666677777777777788888877665543322 2333333333444444444333344333332 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhhHHhHHHhh
Q 039797 170 VVLYLKVLDQLQQWKSESGLLKRKVKKL---VRKTKELSDIIREQNLKIESADAELLR 224 (437)
Q Consensus 170 v~e~~~v~~ELe~ar~ki~~Lqrk~~~~---a~q~K~q~~~lkqqv~~l~~~E~E~~~ 224 (437)
..-|..++.+...+..|+...++++... ....+.+...|..++..++.....+.+
T Consensus 430 kek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~ 487 (980)
T KOG0980|consen 430 KEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET 487 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555554322 112233444455555555554444333
No 151
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.45 E-value=56 Score=32.34 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
.+++.+...|+......+.++..|..++..++..+.-+. +.......+...|..+++.-|.+.-.-.++|
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~--ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE--EESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888889999999999999999999988887543321 1111122344566666666666655555555
No 152
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.31 E-value=95 Score=34.53 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhH
Q 039797 251 DQLQEQNSELLNKL 264 (437)
Q Consensus 251 k~LQ~EK~eL~~kL 264 (437)
..|+..-.+...+|
T Consensus 505 ~~le~~~~~~f~~l 518 (650)
T TIGR03185 505 QQLEEEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455545555555
No 153
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.13 E-value=18 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL-----------YLKVLDQLQQWKSESGLLKRKV 194 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e-----------~~~v~~ELe~ar~ki~~Lqrk~ 194 (437)
+-.||..+...-..|..|.++|+-|.+.|..|..++.. ...++.|...|..+++.|=.|+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677778778888999999999999999999887655 4444555555555555554443
No 154
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.12 E-value=1.4e+02 Score=36.45 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=23.0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039797 92 QDKLHYELEILNLRFQIEELQKRELETKMQFARYHDL 128 (437)
Q Consensus 92 ~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L 128 (437)
.+-......++.++..++.|+++-..|+.=+-.|...
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y 259 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRY 259 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667777777777777777776555444443
No 155
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=80.47 E-value=73 Score=32.69 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=64.2
Q ss_pred hhHHHHHHHHH-------HHHhhhHHhHHHhh-------hhhHHHH----hhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 200 KTKELSDIIRE-------QNLKIESADAELLR-------NCDVLEE----KSNAIQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 200 q~K~q~~~lkq-------qv~~l~~~E~E~~~-------~~~e~E~----Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+..++...+++ ++..+...|.+... +.++++. -......+-.||..|...++.|..|+..+.
T Consensus 185 ~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k 264 (309)
T PF09728_consen 185 QEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK 264 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666 77777776666542 2334443 233456677899999999999999999999
Q ss_pred HhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhh
Q 039797 262 NKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQK 299 (437)
Q Consensus 262 ~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~ 299 (437)
.|-+.+...+-.+ .+........+..+.+++++|++
T Consensus 265 ~k~e~~n~~l~~m--~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 265 SKWEKSNKALIEM--AEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877532221 13333445666777787777764
No 156
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.12 E-value=62 Score=31.67 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhh
Q 039797 154 REVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKS 233 (437)
Q Consensus 154 ~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl 233 (437)
.+|..|...|+||+++=.++..+.--|.-.|.|.+.|-+.-+.-.+.| +-+.++.|...+
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt---a~vmr~eV~~Y~----------------- 114 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT---ASVMRQEVAQYQ----------------- 114 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH---HHHHHHHHHHHH-----------------
Confidence 344555555666665555555566666667777777766555554443 234555555444
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 039797 234 NAIQKLENELKELHSVIDQL 253 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~L 253 (437)
+.|++||..-.+|-+-|.+|
T Consensus 115 ~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 115 QKLKELEDKQEELIRENLEL 134 (195)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 23567777777777777665
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.03 E-value=1.4e+02 Score=35.72 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHhhhhc
Q 039797 251 DQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 251 k~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
...|..-.-...-+..||..+
T Consensus 335 ~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 335 EKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444455555443
No 158
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.91 E-value=1e+02 Score=34.16 Aligned_cols=58 Identities=12% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHhHhh-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 138 LRNMIFLE-KSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 138 Le~~L~~k-~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
++.+|++- +..+-.+...|+.|.++|.+|-+++.+..++-.-++..+.|-|+|++-..
T Consensus 254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~n 312 (622)
T COG5185 254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSN 312 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444432 33445677899999999999999999999999999999999888887443
No 159
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.41 E-value=84 Score=32.73 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 93 DKLHYELEILNLRFQIEELQKRELETKM 120 (437)
Q Consensus 93 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~ 120 (437)
++.++...+..++..+..++.+-.+|+.
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777666654
No 160
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.10 E-value=63 Score=33.99 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 114 RELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESE-NKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 114 RE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsE-n~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
+.+|.-.+-+.-+. +.=.+..++...+|.--..+|..--.+|.+-|.- |..|+..+.+|..+..+|..++.+.+.+..
T Consensus 216 kDWR~hleqm~~~~-~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 216 KDWRSHLEQMKQHK-KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred chHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555444443332 2223446677777777777777777777777765 588999999999999999999999888877
Q ss_pred HHHHHH
Q 039797 193 KVKKLV 198 (437)
Q Consensus 193 k~~~~a 198 (437)
-+....
T Consensus 295 ~V~~~t 300 (359)
T PF10498_consen 295 GVSERT 300 (359)
T ss_pred HHHHHH
Confidence 665543
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.95 E-value=78 Score=32.14 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039797 283 TMENYRQLLNECEQLQKDRAAEAKELIYL 311 (437)
Q Consensus 283 ~~e~~~~L~kqvEqLq~dR~seVEELVYL 311 (437)
+.+++..|-.+|++|+.++. +|-|.||-
T Consensus 205 l~e~I~~L~~eV~~L~~~~~-~~Re~iF~ 232 (258)
T PF15397_consen 205 LEEEIPQLRAEVEQLQAQAQ-DPREVIFA 232 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhc-chHHHhhH
Confidence 44566778889999999888 88888764
No 162
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.91 E-value=69 Score=31.48 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhh
Q 039797 145 EKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLR 224 (437)
Q Consensus 145 k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~ 224 (437)
|+.||-.|.-.+.-.++|- -.-..++..++.+|-.++++++.....+..... .+..+-..++.-+.|.-+
T Consensus 8 k~GEIsLLKqQLke~q~E~---~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~-------~~~~K~~ELE~ce~ELqr 77 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEV---NQKDSEIVSLRAQLRELRAELRNKESQIQELQD-------SLRTKQLELEVCENELQR 77 (202)
T ss_pred hhhhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHhhHhHHHhHHHHHH
Confidence 4445444444444444432 112233444455555555555544444433221 223334444444555555
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 039797 225 NCDVLEEKSNAIQKLENELKELHSVIDQL 253 (437)
Q Consensus 225 ~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~L 253 (437)
...+.+---..+..|+.|+.+||.....+
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 44444444445777778887777776665
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.61 E-value=1.4e+02 Score=34.77 Aligned_cols=59 Identities=29% Similarity=0.300 Sum_probs=34.4
Q ss_pred hhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccc
Q 039797 215 IESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASS 273 (437)
Q Consensus 215 l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s 273 (437)
+....++..+--.+++..-..+..-+.+|.-|++.+..|+...++=..+|+.+..++++
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444445555555555566666667777666776666666666666655543
No 164
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=77.67 E-value=1e+02 Score=37.66 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=66.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhh
Q 039797 144 LEKSYVELLDREVSSVESENKRLENLVVLYL----KVLDQLQQWKSESGLLKRKVKKL---VRKTKELSDIIREQNLKIE 216 (437)
Q Consensus 144 ~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~----~v~~ELe~ar~ki~~Lqrk~~~~---a~q~K~q~~~lkqqv~~l~ 216 (437)
..+.++..|...++.|.-+...-...+.... .+..+-..|+..++.||.+.+.- ..+..+-....+++...|.
T Consensus 1616 ~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~ 1695 (1758)
T KOG0994|consen 1616 SATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLR 1695 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3444555555555555444333223332222 23444456666677666655432 2221122222333333332
Q ss_pred HHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 217 SADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 217 ~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
. ++.+--.....|++.|++||.+-..=.+....++.+...|..+|...-
T Consensus 1696 ~---eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1696 T---EAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 1 222333456678899999998888888888888888888887776443
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.41 E-value=22 Score=32.70 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVES 161 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 161 (437)
+..+|..|+..+.+|+.....|+.+|-.+.. .....+|...+..-..++..+..++..|++
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~----~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSS----EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888877766 455555666555555555555555555554
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.37 E-value=31 Score=33.58 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHH
Q 039797 243 LKELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 243 v~ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
+.+|+..|.+|+.|...+..++++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.24 E-value=77 Score=36.71 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=33.9
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQW 183 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~a 183 (437)
.-+||++|+.+.+.+.-+..+..+|+..-.-++.++....+ .+-|..+
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpev 140 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEV 140 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhh
Confidence 56788888888888888888888877777666666666665 4444333
No 168
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.18 E-value=1.5e+02 Score=34.45 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=75.9
Q ss_pred hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh---
Q 039797 129 KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ----QWKSESGLLKRKVKKLVRKT--- 201 (437)
Q Consensus 129 KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe----~ar~ki~~Lqrk~~~~a~q~--- 201 (437)
+|.+..-.+||..|. .+..++..+-+||..|..-+.+-..+..+|. .+-.++..|+.++...-+.+
T Consensus 81 ~e~e~~~~~le~~l~-------e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 81 KEWEKIKSELEAKLA-------ELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555556665553 3455667788888888887777777766664 44555778888888766655
Q ss_pred HHHHHHHHHHHHhhhHHhHHHhhhhhHHHHh-----hHHHHHHHHHHHHHHHHh
Q 039797 202 KELSDIIREQNLKIESADAELLRNCDVLEEK-----SNAIQKLENELKELHSVI 250 (437)
Q Consensus 202 K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~K-----l~~l~~LE~Ev~ELrr~n 250 (437)
|-+++++.. -+.+...|.+..++-++.-.| .+.+-.||.|-.-||-..
T Consensus 154 kye~~~~~k-eleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 154 KYELHVLSK-ELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 355666677777766666655 455778888887777655
No 169
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.57 E-value=70 Score=30.33 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=59.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhh
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKV----LDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRN 225 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v----~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~ 225 (437)
.+|+..|..++....+++..++..... ..+++.+..++..++.+...-.......+. +.=+......+..+...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA--r~al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA--REALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 345555555555555554444433332 333344444555555555444444333321 11111111122222222
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
...+..=...+..|...+.+|+....+++.++..|.-+..+|+++
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333455677777788888888888888888888888765
No 170
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.39 E-value=67 Score=29.99 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=6.6
Q ss_pred hHHHHHHHHHhH
Q 039797 132 ESLLMELRNMIF 143 (437)
Q Consensus 132 ea~v~ELe~~L~ 143 (437)
.+.+.+|...+.
T Consensus 57 ~a~~~eLr~el~ 68 (177)
T PF07798_consen 57 KAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHH
Confidence 455555555553
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.13 E-value=22 Score=32.69 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHH----HHHHH--HH
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAA----EAKEL--IY 310 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~s----eVEEL--VY 310 (437)
.+|..++.+|+..+.+|+.+...|...|......+....-.........++..|...++.|+.+... +++.+ -|
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3444555555555555555555555555443332111100111223456677788888888875433 33333 36
Q ss_pred HHHHHHHHH
Q 039797 311 LRWANACLR 319 (437)
Q Consensus 311 LRWvNACLR 319 (437)
-+|...|-.
T Consensus 155 ~~~~k~w~k 163 (169)
T PF07106_consen 155 KKWRKEWKK 163 (169)
T ss_pred HHHHHHHHH
Confidence 777777654
No 172
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=76.10 E-value=1.6e+02 Score=34.11 Aligned_cols=21 Identities=33% Similarity=0.161 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039797 100 EILNLRFQIEELQKRELETKM 120 (437)
Q Consensus 100 EI~~Lr~lVeeLqERE~~LE~ 120 (437)
+-..+....++|+.+|..|-.
T Consensus 423 ekk~~eki~E~lq~~eqel~~ 443 (786)
T PF05483_consen 423 EKKQFEKIAEELQGTEQELTG 443 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888876644
No 173
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.06 E-value=66 Score=29.75 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=64.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHH
Q 039797 144 LEKSYVELLDREVSSVESENKRLENLVVLYLKV-----LDQLQQWKSESGLLKRKVKKL-------VRKTKELSDIIREQ 211 (437)
Q Consensus 144 ~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v-----~~ELe~ar~ki~~Lqrk~~~~-------a~q~K~q~~~lkqq 211 (437)
.+..+|+.++.+..+|+....+++.++.....+ .-.++.++-++..|..||..- ...+..-+.+|..-
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV 82 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888777665554 234566666666666666422 12222222222222
Q ss_pred HHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 212 NLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 212 v~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
-.++.....+......++..+...+..+..++...+.....+...+..|..+.
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222233333333445555555555555555555555555555555544433
No 174
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.91 E-value=1.7e+02 Score=34.38 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELET----KMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~L----E~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..-++-|+.+|+.+.-++.-+ -.+--||-.|+||--++.++..- .-..-.+..+.+.|+-|+.+-++|.+--..
T Consensus 614 N~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~-~fa~ID~~Sa~rqIael~~~lE~L~~t~~~ 692 (1104)
T COG4913 614 NDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQAL-NFASIDLPSAQRQIAELQARLERLTHTQSD 692 (1104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc-chhhcchhhHHHHHHHHHHHHHHhcCChhH
Confidence 5677999999999999888644 34445677777776666666543 444555566778888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKLVR 199 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~a~ 199 (437)
...+...|.++....+.|.++.+..+.
T Consensus 693 ~~~~~~~l~aaQT~~~vler~~~~~~~ 719 (1104)
T COG4913 693 IAIAKAALDAAQTRQKVLERQYQQEVT 719 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999998887654
No 175
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.50 E-value=1.7e+02 Score=34.11 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=67.2
Q ss_pred HhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhhhH
Q 039797 143 FLEKSYVELLDREVSSVESENKRLENLVVLY----LKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDI-IREQNLKIES 217 (437)
Q Consensus 143 ~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~----~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~-lkqqv~~l~~ 217 (437)
.........+..++..|+++...|...+..+ -....+|..+..++..|+.++. .++.++..+.. ++.+....+.
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~-~~keS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE-SAKESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777888888887777655433 2334444555555555555555 22222222111 1111111111
Q ss_pred HhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 218 ADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 218 ~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
.+........|++.-...+..||.|+..=|....++--.-++|-.+|+.....
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 11111111123333344577888888888888777777777888888766543
No 176
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=75.43 E-value=23 Score=31.99 Aligned_cols=92 Identities=15% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKI 215 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l 215 (437)
.+|.+++.....++..+...+..+......|+.. .......++.+|.+...|..++=+.+.+.. +++.+-..|
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~---~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e----ilr~~g~~l 105 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKH---DLETSARLEEARRRHQELSHRLLRVLRKQE----ILRNRGYAL 105 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCC
Confidence 3556666666667777777777777766666332 556677888888888888887766654332 455544455
Q ss_pred hHHhHHHhhhhhHHHHhhH
Q 039797 216 ESADAELLRNCDVLEEKSN 234 (437)
Q Consensus 216 ~~~E~E~~~~~~e~E~Kl~ 234 (437)
...|+++......++..++
T Consensus 106 ~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 106 SPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp -------------------
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 5566655555555554444
No 177
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.35 E-value=2e+02 Score=34.84 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
...++|..+..++....++..+.+.|..++.+..
T Consensus 403 ~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~ 436 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESVERLDKRRNKLAAKITSLS 436 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777777777765443
No 178
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.22 E-value=1.3e+02 Score=32.84 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..+..+...+..-+.+-.+|..++.....+..+|..+...+..|+..+..-
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555666666666665555443
No 179
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.89 E-value=1.9e+02 Score=34.37 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=21.3
Q ss_pred HhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 141 MIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSE 186 (437)
Q Consensus 141 ~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~k 186 (437)
||......+.-++.....+++.-.-|++-..++.--..++++|++-
T Consensus 236 QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~ 281 (1265)
T KOG0976|consen 236 QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSV 281 (1265)
T ss_pred HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555555555555444444444445444444
No 180
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.81 E-value=1.4e+02 Score=32.93 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHh
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMI 142 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L 142 (437)
-.+||+.|...+++..+=....+..+.+|..|+.-.+-..+...+|
T Consensus 229 e~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~sel 274 (521)
T KOG1937|consen 229 EEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSEL 274 (521)
T ss_pred cchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3467999999999998888888888888888877766555544443
No 181
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.70 E-value=1.7e+02 Score=34.24 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQ 211 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqq 211 (437)
....++.++.+|++=|.-||.|+.+..+ .++..+.|+.+|-+-+......+|.-..+++++
T Consensus 421 ~~~~~n~El~sLqSlN~~Lq~ql~es~k---~~e~lq~kneellk~~e~q~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 421 GSQDCNLELFSLQSLNMSLQNQLQESLK---SQELLQSKNEELLKVIENQKEENKRLRKMFQEK 481 (861)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778899999999999999988754 455667777778777777767776665555443
No 182
>PF15294 Leu_zip: Leucine zipper
Probab=74.48 E-value=1.1e+02 Score=31.50 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-----hH-HHHHHHHHHHHhhhHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKV----LDQLQQWKSESGLLKRKVKKLVRK-----TK-ELSDIIREQNLKIESA 218 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v----~~ELe~ar~ki~~Lqrk~~~~a~q-----~K-~q~~~lkqqv~~l~~~ 218 (437)
+..|++.|..|++||++|++.+..+... ..|-..+...++.|+. +...... .+ +++.-|..+++.++..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 3447788888888888888777654443 3444444445555555 2221111 11 2233445555555422
Q ss_pred hHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 039797 219 DAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQ 256 (437)
Q Consensus 219 E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~E 256 (437)
+.+. +..+....+.|+..+.--+-....+|.+
T Consensus 206 ---~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 206 ---LEKA---LQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred ---HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 1111 1122223456666666655555555555
No 183
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=74.26 E-value=1 Score=51.67 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhH
Q 039797 95 LHYELEILNLRFQIEELQKRELETKMQFARYHDL---------------KEQESLLMELRNMIFLEKSYVELLDREVSSV 159 (437)
Q Consensus 95 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L---------------KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sL 159 (437)
.|+..+++..+..+..|..+-.++..+|-++..- +.-.+.+..|.+.+......++.+.+....|
T Consensus 359 eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L 438 (859)
T PF01576_consen 359 EDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQL 438 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777767777766666332 2233445555566555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 160 ESENKRLENLVVLYLKVLDQLQQWKSE 186 (437)
Q Consensus 160 EsEn~rL~~~v~e~~~v~~ELe~ar~k 186 (437)
+.|..-|..++.+..+-+.+|+.++..
T Consensus 439 ~~El~dl~~q~~~~~k~v~eLek~kr~ 465 (859)
T PF01576_consen 439 QDELEDLTSQLDDAGKSVHELEKAKRR 465 (859)
T ss_dssp ---------------------------
T ss_pred HHhhccchhhhhhhccchHHHHHHHHH
Confidence 555555555555555555555555433
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.94 E-value=88 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARY 125 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy 125 (437)
.-+..++..+..++..-..|..++-+.
T Consensus 20 ~~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 20 NRLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666655544
No 185
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.87 E-value=72 Score=29.19 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
...++.++..-+..+..|...|..++..-......+.+........+.+..+|..|...+..
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHH
Confidence 34445555555555566777777777777777777777777777777777888887775543
No 186
>PRK12704 phosphodiesterase; Provisional
Probab=73.68 E-value=1.5e+02 Score=32.68 Aligned_cols=7 Identities=0% Similarity=0.164 Sum_probs=3.8
Q ss_pred HHHHHHH
Q 039797 310 YLRWANA 316 (437)
Q Consensus 310 YLRWvNA 316 (437)
-++|+.+
T Consensus 319 i~~ll~~ 325 (520)
T PRK12704 319 LIKLLGR 325 (520)
T ss_pred HHHHHHH
Confidence 3456555
No 187
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.56 E-value=59 Score=31.28 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 169 LVVLYLKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 169 ~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
.+..+.+...+||.-==-++.|+.++.++
T Consensus 70 ~f~~~~~tl~~LE~~GFnV~~l~~RL~kL 98 (190)
T PF05266_consen 70 SFESLMKTLSELEEHGFNVKFLRSRLNKL 98 (190)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 33444444444444333344455555543
No 188
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.14 E-value=50 Score=27.01 Aligned_cols=57 Identities=32% Similarity=0.281 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVR 199 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~ 199 (437)
+.+..|+++| +.+..+++..+.+|+.|.. +-..+..+|..|...|..|+.++.....
T Consensus 5 a~~~~Lr~rL-------d~~~rk~~~~~~~~k~L~~---ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 5 AEIATLRNRL-------DSLTRKNSVHEIENKRLRR---ERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 6677777777777777765 3444455555555556555555544433
No 189
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.69 E-value=1.7e+02 Score=33.06 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 227 DVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 227 ~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
..++.++..+-..|.+..+|.|..+-.+.--..|..|.+.++..
T Consensus 356 ~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 356 KRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888899999888877777777777777776554
No 190
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.50 E-value=54 Score=29.53 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
|+.|.-.|..++.|..-|+.+++.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~ 41 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELAR 41 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 191
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.82 E-value=65 Score=27.76 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHhhHHH-------HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 100 EILNLRFQIEELQKRELETKMQFARYHDL-KEQESLL-------MELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 100 EI~~Lr~lVeeLqERE~~LE~eLLEy~~L-KEQea~v-------~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
--..+..-+..|..++..|+..+..|... ++-++.. ..=......+..+|..|...|+.|+++..++++.|.
T Consensus 26 ~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 26 REEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999887777653 3322221 111222335667777777777777777777777777
Q ss_pred HHHHHH
Q 039797 172 LYLKVL 177 (437)
Q Consensus 172 e~~~v~ 177 (437)
.|..-.
T Consensus 106 ~~~~Y~ 111 (126)
T PF13863_consen 106 EYKKYE 111 (126)
T ss_pred HHHHHH
Confidence 665543
No 192
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.21 E-value=1.4e+02 Score=31.28 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 039797 100 EILNLRFQIEELQ 112 (437)
Q Consensus 100 EI~~Lr~lVeeLq 112 (437)
-++.|..+-++|.
T Consensus 7 K~eAL~IL~~eLe 19 (319)
T PF09789_consen 7 KSEALLILSQELE 19 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.55 E-value=1.6e+02 Score=32.52 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 039797 180 LQQWKSESGLLK 191 (437)
Q Consensus 180 Le~ar~ki~~Lq 191 (437)
+..|+.++++++
T Consensus 412 q~vw~~kl~~~~ 423 (493)
T KOG0804|consen 412 QDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.49 E-value=1e+02 Score=31.64 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
...+..+..++......|..+......+|+..+.
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666666666665554
No 195
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.29 E-value=2e+02 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHH--HHHHHHHH
Q 039797 298 QKDRAAEAKELIY--LRWANACL 318 (437)
Q Consensus 298 q~dR~seVEELVY--LRWvNACL 318 (437)
|.+=|.++.+||- |+=-|-|.
T Consensus 374 Q~~VF~e~~~lv~S~lDGYnVCI 396 (670)
T KOG0239|consen 374 QDDVFEEVSPLVQSALDGYNVCI 396 (670)
T ss_pred HHHHHHHHHHHHHHHhcCcceeE
Confidence 4566788888762 33344443
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.10 E-value=44 Score=27.30 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 039797 99 LEILNLRFQIE 109 (437)
Q Consensus 99 ~EI~~Lr~lVe 109 (437)
.+|..|++-+.
T Consensus 5 a~~~~Lr~rLd 15 (69)
T PF14197_consen 5 AEIATLRNRLD 15 (69)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 197
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.78 E-value=1.8e+02 Score=31.92 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 286 NYRQLLNECEQLQKDRAAEAKELIYLRWANACLRHELMRNQA 327 (437)
Q Consensus 286 ~~~~L~kqvEqLq~dR~seVEELVYLRWvNACLR~ELrn~~~ 327 (437)
....+..+.|+.+.....--+|+ +|++.|+-...+
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~-------~~~k~E~e~~ka 407 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEV-------EKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44556666666666555555554 456666655544
No 198
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=69.41 E-value=46 Score=30.27 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHhhHH----HHHHHHHhHh------------------------
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHD----LKEQESL----LMELRNMIFL------------------------ 144 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~----LKEQea~----v~ELe~~L~~------------------------ 144 (437)
.+.||..|..-|.+|.---..=--.+-+||. |+||..+ |..||++|.+
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~ 91 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSH 91 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH
Q ss_pred --hhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 145 --EKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 145 --k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
.-.-|-.|.-+.+.|+.||++|.+++
T Consensus 92 ~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 92 LQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
No 199
>PRK11281 hypothetical protein; Provisional
Probab=69.30 E-value=2.5e+02 Score=34.07 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLK----VLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~----v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
..|...+..++.+-+..+++++++.+ ...+.++|++.+..-+.+++.
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rlqe 174 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQ 174 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 33666666666666666666655532 233334454444444444433
No 200
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=68.83 E-value=2.3e+02 Score=32.79 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHH-------------H
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKEL----SDIIRE-------------Q 211 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q----~~~lkq-------------q 211 (437)
.+...++|....++..-|+.....+..+..+++.+-+-+..+|-++.++..+-... +.+..+ .
T Consensus 425 ~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~e 504 (698)
T KOG0978|consen 425 LDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREE 504 (698)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888888888887777777776654432211 222222 1
Q ss_pred HHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHH
Q 039797 212 NLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLL 291 (437)
Q Consensus 212 v~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~ 291 (437)
...+..+=..+....+. =...++.||..+.-|......|-.+..-+++.++.-...+-.+ -.+..-++...+..-
T Consensus 505 k~~l~~~i~~l~~~~~~---~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~--~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 505 KSKLEEQILTLKASVDK---LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEA--KQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 11111111111111111 1123445555444444444444444444444443222111000 011222344445666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039797 292 NECEQLQKDRAAEAKELIYLRWANACLRHEL 322 (437)
Q Consensus 292 kqvEqLq~dR~seVEELVYLRWvNACLR~EL 322 (437)
.++++++-.-..--.||--++..+-=|--|+
T Consensus 580 ~~le~i~~~~~e~~~ele~~~~k~~rleEE~ 610 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELEIEKFKRKRLEEEL 610 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666666665555555
No 201
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=68.78 E-value=2.3e+02 Score=32.84 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHhhhHHhHHHhhh
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIRE-QNLKIESADAELLRN 225 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkq-qv~~l~~~E~E~~~~ 225 (437)
+|++.|...-..-++|-+.|++-++.-..++..||.+. |+.+...-+.-++|+.-+.+ .-..+. ....+
T Consensus 101 ~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~------q~ELee~q~~Hqeql~~Lt~aHq~~l~----sL~~k 170 (739)
T PF07111_consen 101 EELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGS------QRELEEAQRLHQEQLSSLTQAHQEALA----SLTSK 170 (739)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 34444554445566777777777777777777775542 33332222222333322221 111111 11122
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc-----------ccccccchhhh----hHHHHHHH
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA-----------SSVTKIEDEGT----TMENYRQL 290 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~-----------~s~~~~E~~~v----~~e~~~~L 290 (437)
..++++.+ +.||.............|.+...|...|.-++..+ +|+-+.....+ -..+-..|
T Consensus 171 ~~~Le~~L---~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L 247 (739)
T PF07111_consen 171 AEELEKSL---ESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREEL 247 (739)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHH
Confidence 33444443 34444443333444444445555555554444332 12211100000 01233568
Q ss_pred HHHHHHHhhhhHH--HHHHHHHHH
Q 039797 291 LNECEQLQKDRAA--EAKELIYLR 312 (437)
Q Consensus 291 ~kqvEqLq~dR~s--eVEELVYLR 312 (437)
.+-|..|+.||.+ -.-||.--|
T Consensus 248 ~~tVq~L~edR~~L~~T~ELLqVR 271 (739)
T PF07111_consen 248 LETVQHLQEDRDALQATAELLQVR 271 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 345665555
No 202
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=93 Score=35.41 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------H----------------HhhhhhhHhhHHHHHHHHHhHhhhhHH------
Q 039797 99 LEILNLRFQIEELQKRELETKMQ-------F----------------ARYHDLKEQESLLMELRNMIFLEKSYV------ 149 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~e-------L----------------LEy~~LKEQea~v~ELe~~L~~k~~Ei------ 149 (437)
..+..|...|+.|.-|--++|.+ | -..-.+|+|--.+.++.++|.....+.
T Consensus 332 ~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~ 411 (852)
T KOG4787|consen 332 LQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLEL 411 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcccH
Confidence 44666666666666665555533 1 223457778777777777664432221
Q ss_pred HHHHH---------------------HHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039797 150 ELLDR---------------------EVSSVESENKRLE-----NLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKE 203 (437)
Q Consensus 150 ~~L~~---------------------kI~sLEsEn~rL~-----~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~ 203 (437)
-.+.+ +|-.+|++-.-++ +.|.....++.+|+.|-.-+|-|+-|+++.-+..-.
T Consensus 412 s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R 491 (852)
T KOG4787|consen 412 TTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVR 491 (852)
T ss_pred HHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHh
Confidence 11111 4445555554444 567777788899999999999999998877553322
Q ss_pred HHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 204 LSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 204 q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
+.-.-..--.+|...|.+. +.-.+|-. +|-.|+++++..-+++...+..|...+-.+
T Consensus 492 ~~~~~~~d~~kIK~LE~e~-R~S~~Ls~------~L~~ElE~~~~~~~~~e~~~evL~~~~~~t 548 (852)
T KOG4787|consen 492 DGEIQYSDELKIKILELEK-RLSEKLAI------DLVSELEGKIPTIDEIEQCCEVLAAVETQT 548 (852)
T ss_pred hhhhccchHHHHHHHHHHH-HHHHHHHH------HHHHHHHhhcCcHhHHHHHHHHHHHHhhhH
Confidence 2111111111222222221 22223333 344677778888888888888887776544
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.93 E-value=1.8e+02 Score=32.10 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHhHHHhh
Q 039797 249 VIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 249 ~nk~LQ~EK~eL~~kL~~Ae 268 (437)
..-+||+|-|+|..-|++-+
T Consensus 436 ~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 436 KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHhHheehhhhh
Confidence 34567788888877776443
No 204
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=67.59 E-value=33 Score=30.05 Aligned_cols=78 Identities=28% Similarity=0.317 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH----h-----HHHh---hhhhHHHHhhHHHHHHHH
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESA----D-----AELL---RNCDVLEEKSNAIQKLEN 241 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~----E-----~E~~---~~~~e~E~Kl~~l~~LE~ 241 (437)
+-++.+|..++.+-.+|.|++-....++++--.- +.+++.. + ..+. .+-..++.. ++-.+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~E----L~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~e---Lk~a~~ 76 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEE----LNKYKSKYGDLDSLAKLSEGGSPSGREAELQEE---LKLARE 76 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCcccccCCCCCCCccccHHHHHH---HHHHHH
Confidence 3467888999999999999999888888764333 3333221 1 0010 112344444 556888
Q ss_pred HHHHHHHHhHHHHHHHH
Q 039797 242 ELKELHSVIDQLQEQNS 258 (437)
Q Consensus 242 Ev~ELrr~nk~LQ~EK~ 258 (437)
++.+|.+...+||.|||
T Consensus 77 qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 77 QINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHhhHHHHHhhccc
Confidence 99999999999999998
No 205
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.55 E-value=3e+02 Score=33.78 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.1
Q ss_pred hcchhHHHHHhHHHHHHHhcccC
Q 039797 18 KAGVPLAISVAGFICAKMMARKD 40 (437)
Q Consensus 18 k~g~~lalS~ag~i~ar~~~r~~ 40 (437)
++||=-||--+||+=||+++...
T Consensus 619 ra~IEaAL~~~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 619 RAGLEAALEAAGLLDAWVTADGT 641 (1353)
T ss_pred HHHHHHHHHHCCCcceeeCCCcc
Confidence 57777799999999999987643
No 206
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=67.37 E-value=1.7e+02 Score=30.84 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=46.4
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHH-HHHhHHHHHHHHHHHH
Q 039797 92 QDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDR-EVSSVESENKRLENLV 170 (437)
Q Consensus 92 ~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~-kI~sLEsEn~rL~~~v 170 (437)
=|+.+|..-++.++.-+...+..=..|+.++-.+.. .|..-.- .....+.+-.|.....
T Consensus 84 iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A--------------------~i~~a~a~~l~~a~~~~~R~~~L~ 143 (352)
T COG1566 84 IDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQA--------------------LIAQAEAQDLDQAQNELERRAELA 143 (352)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888887777666655555555444432 2222222 2445555666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039797 171 VLYLKVLDQLQQWKSES 187 (437)
Q Consensus 171 ~e~~~v~~ELe~ar~ki 187 (437)
....--.++++.++.-.
T Consensus 144 ~~g~vs~~~~~~a~~a~ 160 (352)
T COG1566 144 QRGVVSREELDRARAAL 160 (352)
T ss_pred hcCcccHHHHHHHHHHH
Confidence 66666677777777633
No 207
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=66.84 E-value=62 Score=26.85 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=33.1
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
||||+..+-.|+++=---.-.|-+|...+..+ -....++-+.+...+.-+++..+..+..+++.+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~--~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKL--GPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877644444444444433311 1122223333434444455555555555544443
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.42 E-value=62 Score=27.28 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
+..||.-+.-.-..|..|.++|+-|-+.|..|..++......++.|+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 34556666666677888888888888888888888776555554443
No 209
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.62 E-value=57 Score=32.98 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
+.+||.++.+++-..++|.-||.-|..++
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999998888777666
No 210
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.66 E-value=1e+02 Score=27.34 Aligned_cols=47 Identities=9% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 139 RNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKS 185 (437)
Q Consensus 139 e~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ 185 (437)
..++...-.+...+..++..+-.....|..++.+...+.+||+....
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~ 52 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD 52 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444566667777777777777777777777777777776543
No 211
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.32 E-value=1.3e+02 Score=28.34 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHhhhHHhHH
Q 039797 181 QQWKSESGLLKRKVKKLVRKTKELSD---IIREQNLKIESADAE 221 (437)
Q Consensus 181 e~ar~ki~~Lqrk~~~~a~q~K~q~~---~lkqqv~~l~~~E~E 221 (437)
+.|+.+.+.|+.++...-..+|.-.. .+..++..+...+.+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~ 128 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAE 128 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHH
Confidence 47888888888888777776665542 233455555544443
No 212
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.22 E-value=35 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
.+..|+.+|..-..++..|...|..|-+||.+|+-+-..+.....+++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888898888999999999999999999988766655555544443
No 213
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.93 E-value=1.3e+02 Score=28.78 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIRE 210 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkq 210 (437)
..+.++|+..+.++..|+.++......+-+.+..+++
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344555555555555555555443333333333333
No 214
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.57 E-value=3.4e+02 Score=32.97 Aligned_cols=9 Identities=33% Similarity=0.312 Sum_probs=6.1
Q ss_pred HHHHHHHHH
Q 039797 314 ANACLRHEL 322 (437)
Q Consensus 314 vNACLR~EL 322 (437)
+|.=|-.+|
T Consensus 266 ~N~~Ls~~L 274 (1109)
T PRK10929 266 INRELSQAL 274 (1109)
T ss_pred HHHHHHHHH
Confidence 477777666
No 215
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.31 E-value=2.5e+02 Score=31.36 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=46.4
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENK-------RLENLVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~-------rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
.+..|+.++..+..||+.|.-.+.+|..+-. .++.+.++--.+-.+|+..+.++..|.+-+..
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3566777888888888888888888776643 34566777777888888888888777776653
No 216
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.23 E-value=30 Score=37.82 Aligned_cols=72 Identities=24% Similarity=0.319 Sum_probs=50.8
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHH
Q 039797 224 RNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAA 303 (437)
Q Consensus 224 ~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~s 303 (437)
.-.|-+-+=.-.+++|+.++..|.+-|+.|..||..|..+......++...... +..+|.++.++|+..+..
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~--------~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS--------ETQELTKEIEQLKSERQQ 127 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHH
Confidence 334445555667889999999999999999999999988887776665443222 124566777777766553
No 217
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.03 E-value=67 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYL----KVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~----~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
...|+.|-.....|+.||.-|.++++... .+....+.||++|..|=.+++.
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44567777778888999988887766543 4455557777777776555543
No 218
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=62.74 E-value=2.5 Score=48.63 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
+.++...+..|+|.|+.|+.+..+|+-.++.+.
T Consensus 421 lee~~e~~e~lere~k~L~~El~dl~~q~~~~~ 453 (859)
T PF01576_consen 421 LEELQEQLEELERENKQLQDELEDLTSQLDDAG 453 (859)
T ss_dssp ---------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Confidence 445556666666777777777766666666543
No 219
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.71 E-value=68 Score=32.46 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHhhhh-hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 122 FARYHD-LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 122 LLEy~~-LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
+.++++ |.|-...-.+|-.+|....++++.++..+.+|+-||.+|.+.+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 4444444455555555556666666666666666666655544
No 220
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.45 E-value=1.6e+02 Score=28.86 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=13.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
|++.-|..++.-+...+.+...|..++-
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~ 33 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYE 33 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555544444444444433
No 221
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.21 E-value=2e+02 Score=29.86 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
..+..++..+.+|.++--.+--++-+|..
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444444444443
No 222
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.20 E-value=2.4e+02 Score=30.74 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHHHHH-HHHHHHHHHhhhh
Q 039797 309 IYLRWA-NACLRHELMRNQA 327 (437)
Q Consensus 309 VYLRWv-NACLR~ELrn~~~ 327 (437)
.|+.|+ +|-.|+.+.-...
T Consensus 444 ~~~~~~~d~~~r~~~~~~~~ 463 (511)
T PF09787_consen 444 KYSNSEDDAESRVPLLMKDS 463 (511)
T ss_pred hhccCCCchhhhhhhhccCC
Confidence 455553 3555555543333
No 223
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=62.18 E-value=70 Score=35.55 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESEN----KRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIR 209 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn----~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lk 209 (437)
..+++.+..+|+.|+..+ .-++.-..+...++.++...+.+++-+++.++.+..+.++++..++
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455555566555541 1233444455555555556666666666655555555555544443
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.92 E-value=2e+02 Score=29.63 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
.|.+.+..++..||.|...|..+
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~e 79 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333333
No 225
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.59 E-value=1.2e+02 Score=27.19 Aligned_cols=14 Identities=7% Similarity=-0.346 Sum_probs=6.8
Q ss_pred cccHHHHHHHHHHH
Q 039797 95 LHYELEILNLRFQI 108 (437)
Q Consensus 95 ~~~~~EI~~Lr~lV 108 (437)
.+...=|..+-.++
T Consensus 31 ~~~~~vin~i~~Ll 44 (151)
T PF11559_consen 31 DNDVRVINCIYDLL 44 (151)
T ss_pred ccHHHHHHHHHHHH
Confidence 33444455555554
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.52 E-value=18 Score=39.44 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLV 170 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v 170 (437)
.+..+|+.|++|+++|++++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665
No 227
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.01 E-value=3.2e+02 Score=31.75 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhh----hHhhHHHHHHHHHhHhhhhHHHHHHHH---HHhHHHHHHH
Q 039797 97 YELEILNLRFQIEELQK----RELETKMQFARYHDL----KEQESLLMELRNMIFLEKSYVELLDRE---VSSVESENKR 165 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqE----RE~~LE~eLLEy~~L----KEQea~v~ELe~~L~~k~~Ei~~L~~k---I~sLEsEn~r 165 (437)
.-+||.+|..-|+.|++ .-.+|+.+-+|.--| +-..+...+|..-|. .+|+-..+.. -.-|+.=+..
T Consensus 71 qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala--~ae~~R~~lEE~~q~ELee~q~~ 148 (739)
T PF07111_consen 71 QLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALA--GAEVVRKNLEEGSQRELEEAQRL 148 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh--hHHHHHHhhHHHHHHHHHHHHHH
Confidence 34677777777766654 456777777777666 223333334433221 1222222111 1112222222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHhhhHH-hHHHh-----hhhh-
Q 039797 166 LENLVVLYLKV-LDQLQQWKSESGLLKRKVKKLVR----------KTKELSDIIREQNLKIESA-DAELL-----RNCD- 227 (437)
Q Consensus 166 L~~~v~e~~~v-~~ELe~ar~ki~~Lqrk~~~~a~----------q~K~q~~~lkqqv~~l~~~-E~E~~-----~~~~- 227 (437)
-+.++.....+ ..++....+|...|++.++..-. -+.....+|++|+++.+.. +.... +++-
T Consensus 149 Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvG 228 (739)
T PF07111_consen 149 HQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVG 228 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33444444333 56778888888888887764422 1222345566666555421 11100 1110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 039797 228 VLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNK 263 (437)
Q Consensus 228 e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~k 263 (437)
+.--.-.....-+.|=.+|..+...|+.++..|-.-
T Consensus 229 eq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T 264 (739)
T PF07111_consen 229 EQVPPEVHSQAWEPEREELLETVQHLQEDRDALQAT 264 (739)
T ss_pred hhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011234566688888888888888765433
No 228
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=60.88 E-value=1.7e+02 Score=28.59 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQFAR-YHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLE-y~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
..-.+|.++-.+|-.|.+|=-+|+-+|-+ |..|.+|.-.-+-++.. +..|+....+|...+..+.
T Consensus 69 PSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~--------------v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 69 PTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD--------------VTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999 55566555444444444 3344444444444444444
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039797 175 KVLD-------QLQQWKSESGLLKRKVKKLVRKTKELSDI 207 (437)
Q Consensus 175 ~v~~-------ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~ 207 (437)
.+.+ ||-.. .|++|++-.++-.+|++-
T Consensus 135 ~llE~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 168 (189)
T TIGR02132 135 ELLEGQQKTQDELKET------IQKQIKTQGEQLQAQLLE 168 (189)
T ss_pred HHHhcCccchhHHHHH------HHHHHhhhHHHHHHHHHH
Confidence 4433 44443 677777777777666443
No 229
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.69 E-value=2.6e+02 Score=30.74 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 039797 209 REQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQL 253 (437)
Q Consensus 209 kqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~L 253 (437)
.++...|+.++..+.++..+++.+.+.+...+.++.++.....++
T Consensus 86 ~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~ 130 (514)
T TIGR03319 86 LQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEEL 130 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555555555555554444444433
No 230
>smart00338 BRLZ basic region leucin zipper.
Probab=60.43 E-value=34 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
+|...+.+||.+|..|...|.+|+.+...|...+..
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777666666555543
No 231
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.93 E-value=1.2e+02 Score=30.13 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=17.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039797 227 DVLEEKSNAIQKLENELKELHSVIDQLQEQNS 258 (437)
Q Consensus 227 ~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~ 258 (437)
++++++-+.++..+..+.+|+....+++.|-.
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 34555555555666666666665555554443
No 232
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.30 E-value=1.8e+02 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 039797 236 IQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ 254 (437)
+..||.+|.+||+.-.+++
T Consensus 198 ~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 198 CEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456666666666555444
No 233
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.01 E-value=1.7e+02 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 039797 154 REVSSVESENKRLENLVVLYLK----VLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 154 ~kI~sLEsEn~rL~~~v~e~~~----v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..++.++++.+||...-.++-. ++.|++..|.+|....+.++-+
T Consensus 56 ~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 56 AQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHH
Confidence 3456667777776644333332 3677777777777766655433
No 234
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=58.48 E-value=1.8e+02 Score=28.23 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
.....|..|+.....-...-..=..+|...|. ..+.+|+.+|..+..++..+...+..|..=...=..+-.++..
T Consensus 15 e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~-----~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~ 89 (206)
T PF14988_consen 15 EKEKKIEKLWKQYIQQLEEIQRERQELVSRYA-----KQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQT 89 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566777776644333333333334555554 4466788888888888888887777776555544455666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039797 176 VLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 176 v~~ELe~ar~ki~~Lqrk 193 (437)
+..++..++......-++
T Consensus 90 Le~e~~~~~~e~~~~l~~ 107 (206)
T PF14988_consen 90 LEEELEKMRAEHAEKLQE 107 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655554443333
No 235
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.34 E-value=2e+02 Score=28.51 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 121 QFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 121 eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
.+++|| +++.+..+.++...+.--.+.-..|.++++.++....+++..+.
T Consensus 27 ~~l~Q~-ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 27 KMLEQA-IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 35666666666666666666666666777766666666665443
No 236
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=58.09 E-value=3.5e+02 Score=31.32 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIES 217 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~ 217 (437)
+.+..++..|+-.++.|+=||.- +.+|.++-..||+.|.-=|..-..+--+-=.+|+|+.....+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsv---LteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrts 171 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSV---LTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTS 171 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHH---HHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhh
Confidence 34445555666666666555443 345666667777777665544333322222245555444433
No 237
>PLN02939 transferase, transferring glycosyl groups
Probab=57.48 E-value=4.1e+02 Score=31.94 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh-----------hHHHHHHHHHhHhhhhHH--------HHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQ-----------ESLLMELRNMIFLEKSYV--------ELLDREVS 157 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----------ea~v~ELe~~L~~k~~Ei--------~~L~~kI~ 157 (437)
+..|+..||.-=-.|++--.-|..+|.+...-.|- ++.+.+||..+.+....+ +-+-.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 45566666665556666666666666555433222 233444444443333222 22333445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhH
Q 039797 158 SVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTK---ELSDIIREQNLKIESADAELLRNCDVLEEKSN 234 (437)
Q Consensus 158 sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K---~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~ 234 (437)
.||.=-.+.-.++.....+..+-...+.|+..|+.-++. ++-.| .-+..++|+|..++ +-..+.+.++..-
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-- 377 (977)
T PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE-ANVSKFSSYKVELLQQKLKLLE---ERLQASDHEIHSY-- 377 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hhHhhhhHHHHHHHHHHHHHHH---HHHHhhHHHHHHH--
Confidence 555544555555555555544444444444444433221 11111 12233444443333 2233444455443
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQN 257 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK 257 (437)
++--..++.|++.+.+.|-.|.
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~ 399 (977)
T PLN02939 378 -IQLYQESIKEFQDTLSKLKEES 399 (977)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhh
Confidence 2344566777777777665554
No 238
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.47 E-value=1e+02 Score=25.40 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 039797 233 SNAIQKLENELKELHSVIDQLQEQNSELLNK 263 (437)
Q Consensus 233 l~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~k 263 (437)
+..+.-|..|+.+|+..|..|..++..|...
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456677777777777777666555555443
No 239
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.05 E-value=2.5e+02 Score=29.32 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHhhHH-HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYH----DLKEQESL-LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~----~LKEQea~-v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
.-.-++.|+..++.|++--..|..+.-... .+.|++.. |.+-=++|...+.+|..|...++.--.++.+.+++|.
T Consensus 158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999887777776655544 33333333 3334466777777777777777777777666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 172 LYLKVLDQLQQWKSESGLLKRKVKKLVRKT 201 (437)
Q Consensus 172 e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~ 201 (437)
.+ .+++-.||+|++..+-.+
T Consensus 238 ~L----------lsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 238 SL----------LSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred HH----------HHHHHHHHHHHHHHhhhH
Confidence 44 344445666666555443
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.85 E-value=1.2e+02 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQ 256 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~E 256 (437)
.+.+-+.++..|+...+.|+.|
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666655555544
No 241
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.62 E-value=28 Score=36.41 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=38.1
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 221 ELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 221 E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
.+..+.+++|.+ +.+||..+.++......++.+...|..+|+..+..+
T Consensus 141 ~l~~Ri~e~Eer---is~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 141 SLNSRIDELEER---ISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667778766 558999999999999999999999999999888653
No 242
>PRK10698 phage shock protein PspA; Provisional
Probab=56.08 E-value=2.1e+02 Score=28.02 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 039797 176 VLDQLQQWKSESGLLKRKVKKLVRKTKELSDI--IREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQL 253 (437)
Q Consensus 176 v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~--lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~L 253 (437)
+..+++.+...+..++.|...-..+.++.+.- |.++ ......+..-..+++.--..+..|...+..|+....+.
T Consensus 57 ~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K----~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK----QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566555555555444211 1111 11111222222233344445667778888888888888
Q ss_pred HHHHHHHHHhHHHhhhh
Q 039797 254 QEQNSELLNKLQEWHQS 270 (437)
Q Consensus 254 Q~EK~eL~~kL~~Ae~~ 270 (437)
...+..|.-|..+|+++
T Consensus 133 k~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 133 RARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888999999988876
No 243
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.06 E-value=2.6e+02 Score=29.15 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccc-------cchhhh--hHHHHHHHHHHHHHHh
Q 039797 228 VLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTK-------IEDEGT--TMENYRQLLNECEQLQ 298 (437)
Q Consensus 228 e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~-------~E~~~v--~~e~~~~L~kqvEqLq 298 (437)
++..|...|.-||+.+.-.+..+..|+.+..-+..-|+-.+..+.+... +.-... .--........+|.|+
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ 168 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQ 168 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHH
Confidence 4455555566666666666666666666666555556555544322110 000000 0001112335677788
Q ss_pred hhhHHHHHHH
Q 039797 299 KDRAAEAKEL 308 (437)
Q Consensus 299 ~dR~seVEEL 308 (437)
--..-+|||=
T Consensus 169 ekynkeveer 178 (307)
T PF10481_consen 169 EKYNKEVEER 178 (307)
T ss_pred HHHHHHHHHH
Confidence 8888888874
No 244
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=55.87 E-value=24 Score=38.05 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=48.1
Q ss_pred HhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 130 EQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV---LYLKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 130 EQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~---e~~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..-++|+||+.++.+-+..-..... +..|+.....++..+. ........++.++.+++.+.+.++..
T Consensus 319 rT~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (448)
T PF05761_consen 319 RTAAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKEL 388 (448)
T ss_dssp EEEEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3467889999998877766655554 7888888888887766 66677777777777777777766543
No 245
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.87 E-value=2e+02 Score=27.76 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 234 NAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
..+..|...+.+|++...++.-.+..|.-|...|++.
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777778888888888765
No 246
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.84 E-value=1.3e+02 Score=28.07 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHH-------HHHHHHHHHhHHHHHHHHH
Q 039797 187 SGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLE-------NELKELHSVIDQLQEQNSE 259 (437)
Q Consensus 187 i~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE-------~Ev~ELrr~nk~LQ~EK~e 259 (437)
+++|.+ ++...+|+.+.-+||+-..|+-...-.. +.. ++++--.+|| .+|.-|+..|.+++.|-.-
T Consensus 34 VReLNr---~LrG~~reEVvrlKQrRRTLKNRGYA~s-CR~---KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 34 VRELNR---HLRGLSREEVVRLKQRRRTLKNRGYAQS-CRV---KRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHH---HhcCCCHHHHHHHHHHHHHHhhhhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456766 4456788888888888888876665433 111 2222223444 4455555555555555555
Q ss_pred HHHhHHHhh
Q 039797 260 LLNKLQEWH 268 (437)
Q Consensus 260 L~~kL~~Ae 268 (437)
+-.|.+++.
T Consensus 107 ~k~k~e~l~ 115 (135)
T KOG4196|consen 107 YKSKYEALQ 115 (135)
T ss_pred HHHHHHHHH
Confidence 555554444
No 247
>PRK12705 hypothetical protein; Provisional
Probab=55.62 E-value=3.3e+02 Score=30.24 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 039797 183 WKSESGLLKRKVKKLVRKTKEL 204 (437)
Q Consensus 183 ar~ki~~Lqrk~~~~a~q~K~q 204 (437)
+|.++..++.++..+.+..+..
T Consensus 57 ~~~~~~~~~~~~e~e~~~~~~~ 78 (508)
T PRK12705 57 AKELLLRERNQQRQEARREREE 78 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 248
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.38 E-value=24 Score=26.90 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
+.-+.|.+=-++|-.||.||+.++.++.++
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455678888999999999999999988765
No 249
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=55.31 E-value=5e+02 Score=32.23 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
++.++.+...-..-=...++.|--|.+||+-- .+. .-.+...-..++.-...++.++.+-....+.+.++.....+|
T Consensus 187 ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~-e~~--~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el 263 (1294)
T KOG0962|consen 187 LDSLKKLRKDQSQEVKTKKQELEHLKTLKERA-EVL--RLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKEL 263 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56666666665554445555555566666532 222 222233344455556666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039797 181 QQWKSESGLLKRKVKKLVRKT 201 (437)
Q Consensus 181 e~ar~ki~~Lqrk~~~~a~q~ 201 (437)
+..-.++..|+.+.+....+.
T Consensus 264 ~k~~~~~~~l~~e~~~l~~~~ 284 (1294)
T KOG0962|consen 264 EKLLKQVKLLDSEHKNLKKQI 284 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777677666666555544433
No 250
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.65 E-value=1.5e+02 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVE 160 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLE 160 (437)
.++..|...+.....|=..+|.++--.=. ...+-.|+..+..-..+++.++.+|..+.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt----~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPT----RDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47778888888777777777777665544 33344455444444444444444444443
No 251
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.52 E-value=2.2e+02 Score=27.94 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYH 126 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~ 126 (437)
.++..|+..+.+|...-..|..=..+|-
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~E 50 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYE 50 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666666666655555554444443
No 252
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=54.19 E-value=12 Score=28.87 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ 254 (437)
++-+||.||.-||+.|++|=
T Consensus 19 rv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eHHHHHHHHHHHHHHhHHHH
Confidence 47799999999999999984
No 253
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.89 E-value=3.5e+02 Score=30.08 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhHhhhhHHHH---HHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVEL---LDREVSSVESE-----------NKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~---L~~kI~sLEsE-----------n~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
+..|.+|+-...-..+=||. |...|+-|=++ ++.|++...-..-..+.|+..|..-..||=+++
T Consensus 344 e~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk-- 421 (527)
T PF15066_consen 344 EKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK-- 421 (527)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--
Confidence 45566666555544444443 33345444433 245666666666778888888888877776554
Q ss_pred HHhhHHHHHHHHHHHHh-hhHHhHHHhhhhhHHHH
Q 039797 198 VRKTKELSDIIREQNLK-IESADAELLRNCDVLEE 231 (437)
Q Consensus 198 a~q~K~q~~~lkqqv~~-l~~~E~E~~~~~~e~E~ 231 (437)
+.|+....|+++-+. ++.+.. ....|.|+++
T Consensus 422 --K~k~nyv~LQEry~~eiQqKnk-svsqclEmdk 453 (527)
T PF15066_consen 422 --KIKANYVHLQERYMTEIQQKNK-SVSQCLEMDK 453 (527)
T ss_pred --HHhhhHHHHHHHHHHHHHHhhh-HHHHHHHHHH
Confidence 457777777765443 333322 2334445544
No 254
>PF13514 AAA_27: AAA domain
Probab=53.70 E-value=4.6e+02 Score=31.31 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKELIYLRWAN 315 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEELVYLRWvN 315 (437)
...|+.++.++.....+|+.+..+|...+..++..+..+.... ++.++.-+.+.+...=-..+++.+-++=.-
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~-------~~a~l~~e~e~~~a~l~~~~~~~~~~~la~ 963 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDD-------DAAELEQEREEAEAELEELAEEWAALRLAA 963 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777776666665544442221 223333444444333333344444444444
Q ss_pred HHHHHHHHhhhh
Q 039797 316 ACLRHELMRNQA 327 (437)
Q Consensus 316 ACLR~ELrn~~~ 327 (437)
..|+.-+..|..
T Consensus 964 ~lL~~a~~~~r~ 975 (1111)
T PF13514_consen 964 ELLEEAIERYRE 975 (1111)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 255
>PTZ00491 major vault protein; Provisional
Probab=53.46 E-value=4.4e+02 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=14.6
Q ss_pred HHhHHHHHHHhcccCCCCCC
Q 039797 26 SVAGFICAKMMARKDDKVSS 45 (437)
Q Consensus 26 S~ag~i~ar~~~r~~~~~~~ 45 (437)
=|.|++|.-|.+|-..-+.|
T Consensus 570 DFvGd~Ck~iaSrIR~aVA~ 589 (850)
T PTZ00491 570 DFVGDACKTIASRVRAAVAS 589 (850)
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 46899999888887744444
No 256
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.35 E-value=40 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 156 VSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 156 I~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
...+.+||++|+++++++..-..+++..+.++..|++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666665
No 257
>PTZ00464 SNF-7-like protein; Provisional
Probab=53.09 E-value=2.3e+02 Score=27.75 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=33.4
Q ss_pred cccccccCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 79 STHFMKSKGDLEFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
++.||+.. ..++.....=+..|+..+..|+.|..+|+.|+-.|+.
T Consensus 2 ~rlFG~~k----~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~ 46 (211)
T PTZ00464 2 NRLFGKKN----KTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKE 46 (211)
T ss_pred ccccCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577654 1345556666899999999999999998888887753
No 258
>PRK00106 hypothetical protein; Provisional
Probab=52.26 E-value=3.8e+02 Score=29.96 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=4.0
Q ss_pred hhHHHHhhhh
Q 039797 382 SRLLKRLKRW 391 (437)
Q Consensus 382 ~~Li~KLKkW 391 (437)
-+|+|=+=|+
T Consensus 379 AGLLHDIGK~ 388 (535)
T PRK00106 379 AGFLHDMGKA 388 (535)
T ss_pred HHHHHhccCc
Confidence 3344444333
No 259
>PRK00295 hypothetical protein; Provisional
Probab=51.57 E-value=1e+02 Score=25.00 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
..+.+||..+.--...|+.|+..|...+.+..+|+.+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677666666666666666666555554444433
No 260
>PRK11519 tyrosine kinase; Provisional
Probab=51.51 E-value=4.1e+02 Score=30.14 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRL--ENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKE---LSD 206 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL--~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~---q~~ 206 (437)
...+..|+.+|..-..+++.....+...+.+|.-+ ..+ .......+...+.++..|+.+.......-.. +..
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~e---a~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~ 342 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE---AKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYR 342 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH
Confidence 34566677777666666666666666666665421 111 1112222222333333333332222111000 011
Q ss_pred HHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 207 IIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 207 ~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
.++++... +.+...+++.+...+.+.|.+..+|.|...-.+.--..|..|++.+...
T Consensus 343 ~l~~~~~~-------L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 343 TLLEKRKA-------LEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222222 2233345566677777888888888887777777777777777777644
No 261
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.38 E-value=43 Score=33.79 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 039797 155 EVSSVESENKRLENLVVLY-LKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v~e~-~~v~~ELe~ar~ki~~Lqr 192 (437)
.+..|++||++|+.++.++ ..+....+.++.++..|++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888877 4444444446666666666
No 262
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.12 E-value=57 Score=25.45 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
+|...+..||..|..|...|..|..+...|...+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777776666665554
No 263
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.89 E-value=71 Score=25.73 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
..+.+||..|+-....|+.|+..|...+.+..+|+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~ 38 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQ 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655555555555555554444443333
No 264
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=50.62 E-value=2.1e+02 Score=26.54 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
..++.+-++---.|+.+-..|+.+|--.-. +++..+.+ ..-...+|..|.-.|+.|-++.++|..++.-+.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~--~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQE--NKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHH--hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666543211 22322333 333466677777777777777777766555443
No 265
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.66 E-value=86 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
.+..|+.++..-..++..|...|..|-+||.+|+-+-..+.....++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888888876665555554444
No 266
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.66 E-value=4.1e+02 Score=29.55 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh--cccccccchhhhhHHHHHHHHHHHHHHhh
Q 039797 233 SNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS--ASSVTKIEDEGTTMENYRQLLNECEQLQK 299 (437)
Q Consensus 233 l~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~--~~s~~~~E~~~v~~e~~~~L~kqvEqLq~ 299 (437)
+.++..-=.++.|+=+.+-.+-.|-++|-.++.+-+.. ..++. ...++|..+.++.++|+.
T Consensus 454 lt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slE------kl~~Dyqairqen~~L~~ 516 (521)
T KOG1937|consen 454 LTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLE------KLHQDYQAIRQENDQLFS 516 (521)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHH
Confidence 44566666788888889999999999999998875443 23332 234556666666666653
No 267
>PRK02793 phi X174 lysis protein; Provisional
Probab=49.39 E-value=98 Score=25.37 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
+..+.+||.+++-...-|+.|+..|...+.+..+|+.+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655555554444433
No 268
>PRK04406 hypothetical protein; Provisional
Probab=49.29 E-value=94 Score=25.78 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
+..+.+||.+++-...-|+.|+..|...+.+..+|+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444443333
No 269
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=49.13 E-value=2.5e+02 Score=27.02 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHH--hHhhhhHHHHHHHHH---HhHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNM--IFLEKSYVELLDREV---SSVESENKRLENLVV 171 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~--L~~k~~Ei~~L~~kI---~sLEsEn~rL~~~v~ 171 (437)
....|...|..|-...-.+..++.++-++-. .+.+++++ +.+...+=+.-..-+ ...+....+|+.++
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~------~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~- 108 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEA------QVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL- 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4557777888888877788888877666544 33334333 333333333322222 22233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 039797 172 LYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIE 216 (437)
Q Consensus 172 e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~ 216 (437)
..+...++.++.++..|++++... +++...++.+.+.+.-+
T Consensus 109 --~~~~~~v~~l~~~l~~L~~ki~~~--k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 109 --AAVEETLAKLQEDIAKLQAKLAEA--RARQKALAIRHQAASSR 149 (219)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 334555556666666666666554 44444444444444433
No 270
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.94 E-value=1.5e+02 Score=33.03 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
++.|+.+|+.+|+...|+-.++..++-+|.+
T Consensus 26 ~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~ 56 (604)
T KOG3564|consen 26 NEDEFIRLRKDFEDFEEKWKRTDAELGKYKD 56 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3789999999999999999999999999977
No 271
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.69 E-value=2.2e+02 Score=26.27 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH---------HHHHhHhhhhHHHHHHHHH----HhHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLME---------LRNMIFLEKSYVELLDREV----SSVESEN 163 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~E---------Le~~L~~k~~Ei~~L~~kI----~sLEsEn 163 (437)
...+|..+|--.-.|+-.=.+++.+|-..-.|-|--..+-+ |-..+..++.++-.|..++ -.|.--.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888777776665554444 4444555666666665544 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHh--hhhhHHHHhhHHHHHHHH
Q 039797 164 KRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELL--RNCDVLEEKSNAIQKLEN 241 (437)
Q Consensus 164 ~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~--~~~~e~E~Kl~~l~~LE~ 241 (437)
++|..-..++..+..+|......+..++. ...+.+.+-..+..++..|.....-.. ....+.......+.+|+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~----~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~ 159 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLRE----ELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44444444444454444444333333222 333344444444444444443322111 111235556666777778
Q ss_pred HHHHHHHHhHHHHHH
Q 039797 242 ELKELHSVIDQLQEQ 256 (437)
Q Consensus 242 Ev~ELrr~nk~LQ~E 256 (437)
.|..|++....|+..
T Consensus 160 ~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 160 EIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888777776653
No 272
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.61 E-value=4.9e+02 Score=30.18 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=8.3
Q ss_pred hHHHHhhhhhcCCC
Q 039797 383 RLLKRLKRWVDGSE 396 (437)
Q Consensus 383 ~Li~KLKkWv~gke 396 (437)
-|=+.+..|.....
T Consensus 746 ~Lr~~v~~~L~~~~ 759 (782)
T PRK00409 746 KLRKGVQEFLKKHP 759 (782)
T ss_pred HHHHHHHHHHcCCC
Confidence 45555666776654
No 273
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.57 E-value=2.3e+02 Score=29.01 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=30.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 195 KKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 195 ~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
..+.-.-|.+-+.||-+|+.--+.+. |-.+..+||.+|++|--.|..||.|+.-|-
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDr-----------KKaRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDR-----------KKARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555566666666554433 233455666666666666666666665443
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.13 E-value=4.9e+02 Score=30.04 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 130 EQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 130 EQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
.|-..+.+|+++...-+...+.|..+++....--+.|...+.
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566665555555555555555555544444444333
No 275
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.84 E-value=5.9e+02 Score=30.87 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHhHHHhhhhcccc
Q 039797 236 IQKLENELK-ELHSVIDQLQEQNSELLNKLQEWHQSASSV 274 (437)
Q Consensus 236 l~~LE~Ev~-ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~ 274 (437)
+..++.+.. ++.....+++.+...+...+......+.+.
T Consensus 422 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 461 (1201)
T PF12128_consen 422 YQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNP 461 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 444555544 444455566666666666666665555443
No 276
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.65 E-value=2.7e+02 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQK 113 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqE 113 (437)
..+..+.+.+.+|++
T Consensus 69 ~~f~~~~~tl~~LE~ 83 (190)
T PF05266_consen 69 SSFESLMKTLSELEE 83 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 277
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.41 E-value=3.5e+02 Score=28.10 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 110 ELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGL 189 (437)
Q Consensus 110 eLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~ 189 (437)
+++.+-..+.-+|-|| ..--+|+|.+| .++++-+.-...-|+++|+||.-++... ++.++--+...--
T Consensus 24 ~ykq~f~~~reEl~EF------QegSrE~Eael---esqL~q~etrnrdl~t~nqrl~~E~e~~---Kek~e~q~~q~y~ 91 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEF------QEGSREIEAEL---ESQLDQLETRNRDLETRNQRLTTEQERN---KEKQEDQRVQFYQ 91 (333)
T ss_pred HHHHHHHHHHHHHHHH------hhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH----hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 190 LKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEE----KSNAIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 190 Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~----Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
-.-.+..+..|++++-.-++.-+..|+ ...+.+|. +.-.+.+||.....-=-.|.=|+-|..|--+-|
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLE-------QaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~ll- 163 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELE-------QANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL- 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Q ss_pred HhhhhcccccccchhhhhHHHHHHHHHHH
Q 039797 266 EWHQSASSVTKIEDEGTTMENYRQLLNEC 294 (437)
Q Consensus 266 ~Ae~~~~s~~~~E~~~v~~e~~~~L~kqv 294 (437)
|+.-.++.+..||..++
T Consensus 164 ------------esvqRLkdEardlrqel 180 (333)
T KOG1853|consen 164 ------------ESVQRLKDEARDLRQEL 180 (333)
T ss_pred ------------HHHHHHHHHHHHHHHHH
No 278
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.36 E-value=3.3e+02 Score=27.80 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=67.1
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE------NLVVLYLKVLDQLQQWKSESGLLKRKVKKL---V 198 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~------~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~---a 198 (437)
.+.....+..++.++..-..+++.....+...+.+|.-+. ........+..++..++.++..|+.....+ .
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v 244 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Confidence 3334556777777777777777777777777777664322 233444555555555555555544321110 1
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 199 RKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 199 ~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
...++++..|+.|+...... +.... ...+.....+..+|.|...-.+.--.-+..+++.|...
T Consensus 245 ~~l~~~i~~l~~~i~~e~~~---i~~~~------~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQRNQ---LSGGL------GDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hhcCC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12244444444443322211 11000 01233444555555555555555555666666666544
No 279
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.30 E-value=98 Score=30.27 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENL------VVLYLKVLDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~------v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
.-.+..+++.++.+-.||.+. +.+...+..+|...+.+|..++.+++...
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666666653 44555666666666666666666555443
No 280
>PRK00846 hypothetical protein; Provisional
Probab=47.10 E-value=1.1e+02 Score=25.71 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
+..+.+||.++.-...-|+.|+..|...+.+..+|+.++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777777777766665555554443
No 281
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=46.98 E-value=52 Score=25.01 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+|-..+.+|+.+|..|...|..|+.+...|.
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566777888888877777777766553
No 282
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=46.74 E-value=16 Score=32.18 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.3
Q ss_pred hhhcchhHHHHHhHHHHHHHhcccCCCC
Q 039797 16 LLKAGVPLAISVAGFICAKMMARKDDKV 43 (437)
Q Consensus 16 ~lk~g~~lalS~ag~i~ar~~~r~~~~~ 43 (437)
++-+|+.|.||++.-|++|++-|++.++
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4457999999999999999998877443
No 283
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.72 E-value=3e+02 Score=27.27 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=11.9
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENKRL 166 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL 166 (437)
.+..|+-.+.....+...|..+..-++.++.+|
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 284
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.55 E-value=82 Score=24.55 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
...++.|..++..|+.+|..|..++..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665544443
No 285
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=46.17 E-value=3.6e+02 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+.+|..+|+-|.-+..-||.+..+--
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr 291 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETR 291 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 34666777777777777776544433
No 286
>PRK02119 hypothetical protein; Provisional
Probab=45.97 E-value=1.4e+02 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
+..+.+||..+.--...|+.|+..|...+.+..+|+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444443333
No 287
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.63 E-value=6.4e+02 Score=30.71 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=80.5
Q ss_pred hhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 039797 126 HDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLEN----LVVLYLKVLDQLQQWKSESGLLKRKVKK---LV 198 (437)
Q Consensus 126 ~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~----~v~e~~~v~~ELe~ar~ki~~Lqrk~~~---~a 198 (437)
..+++-...+.+|+..|..-..+|+..+.+|..+--+-+++++ ...++..+..++..++.+.-.++.-+.. ..
T Consensus 671 k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 671 KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 4455555556666666666666666666666666555555553 3445555666666666666555554332 22
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHHHhhhh-hHHHH-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 199 RKTKELSDIIREQNLKIESADAELLRNC-DVLEE-KSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 199 ~q~K~q~~~lkqqv~~l~~~E~E~~~~~-~e~E~-Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
...+..++.+.++... .|.++.... .++-. -.+++..|=.++..|...+..++.+--++.-+-.+.+..+
T Consensus 751 e~i~~~l~~~~~~~~~---~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQSNY---FESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHHHHHHh---HHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 334443222 22211 2456777778888888888888888777666666666553
No 288
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.63 E-value=2.2e+02 Score=25.33 Aligned_cols=41 Identities=34% Similarity=0.380 Sum_probs=30.3
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 227 DVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 227 ~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
..+..|-+.|+.++.|+.=|.-.|.+|...-..|-.-|+..
T Consensus 33 e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888999999888888887776666666666543
No 289
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.62 E-value=1.3e+02 Score=32.15 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
..+..++..|+.+.+.+..++....+..++.+..+.+.+.|+.+++
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~ 83 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIK 83 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 3345555666666666665555422222233334444444444333
No 290
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.31 E-value=78 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.++..+..++..++.+|..|+.++..+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555666666665555555
No 291
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=45.17 E-value=1.9e+02 Score=27.58 Aligned_cols=73 Identities=22% Similarity=0.213 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKR--------ELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 101 I~~Lr~lVeeLqER--------E~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
.+.+-.+|++|-++ |..-..+|.||-.-=+=+..-.+....|+..-.||+.+..+++..|.||++.+..+.+
T Consensus 23 ~d~~~~lVe~lve~SdfY~~gvEfdw~~eFveyV~cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 23 NDTFIKLVEELVERSDFYSSGVEFDWKDEFVEYVDCVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 45566677777665 5667788888877544444444445556666677777777777777777776555444
Q ss_pred H
Q 039797 173 Y 173 (437)
Q Consensus 173 ~ 173 (437)
.
T Consensus 103 ~ 103 (158)
T PF03112_consen 103 L 103 (158)
T ss_pred H
Confidence 3
No 292
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.15 E-value=4.5e+02 Score=29.47 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH
Q 039797 175 KVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIES 217 (437)
Q Consensus 175 ~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~ 217 (437)
....+|..+...+..||..+..-.+-=+.|+.++-++++.+.+
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNe 501 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNE 501 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455666666667777776666666667777777777776653
No 293
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.71 E-value=1.1e+02 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
+..++..|+++.+.+..++....+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhh
Confidence 344444444444444444444433
No 294
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=44.27 E-value=2.8e+02 Score=26.18 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhh
Q 039797 242 ELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKD 300 (437)
Q Consensus 242 Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~d 300 (437)
+...||..-++|+...+.|..-++-|+..++-+.-. -..+..+..++...+|.++..
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vv--l~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVSQIGVV--LNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHh
Confidence 334444444445444444444455555432221000 011223445677777777654
No 295
>PRK04325 hypothetical protein; Provisional
Probab=44.26 E-value=1.3e+02 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
..+.+||..+.-....|+.|+..|..-+-+..+|+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665555555555555555554444443
No 296
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.13 E-value=2.8e+02 Score=26.11 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccc
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSV 274 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~ 274 (437)
.++.+..+|+.....||.+++.|..++...-.+.+.+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl 122 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 5668888899999999999999988886654443333
No 297
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.10 E-value=2.1e+02 Score=24.62 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
....+.++..|+..+..|+.++..+-.+|..-..+
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777654443
No 298
>PF13514 AAA_27: AAA domain
Probab=43.77 E-value=6.4e+02 Score=30.13 Aligned_cols=44 Identities=34% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 284 MENYRQLLNECEQLQKDRAAEAKELIYLRWANACLRHELMRNQA 327 (437)
Q Consensus 284 ~e~~~~L~kqvEqLq~dR~seVEELVYLRWvNACLR~ELrn~~~ 327 (437)
+....+|..+.++|....-.--.+|--.+.-.+=++.++-...+
T Consensus 345 ~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 388 (1111)
T PF13514_consen 345 RERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPA 388 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 45566677777777666655556666666655556666544433
No 299
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=43.48 E-value=1.4e+02 Score=28.96 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 156 VSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 156 I~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
+..++.+.+|++...........+++.++.++..++.
T Consensus 80 ~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~ 116 (322)
T TIGR01730 80 LELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQA 116 (322)
T ss_pred HHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 3344444455555555544455555555555444443
No 300
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.82 E-value=6.4e+02 Score=29.85 Aligned_cols=150 Identities=22% Similarity=0.235 Sum_probs=70.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHH-----HHhhhhhhHhhHHHHHHHHHhHhhhhHH-------HHHHHHHHhHHHH
Q 039797 99 LEILNLRFQIE----ELQKRELETKMQ-----FARYHDLKEQESLLMELRNMIFLEKSYV-------ELLDREVSSVESE 162 (437)
Q Consensus 99 ~EI~~Lr~lVe----eLqERE~~LE~e-----LLEy~~LKEQea~v~ELe~~L~~k~~Ei-------~~L~~kI~sLEsE 162 (437)
.|...||+.++ .|+|+|..-+.- -+|...|+ +.-+-||++|..-.... +.|-+.|+++..|
T Consensus 394 sENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLq---SlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E 470 (861)
T PF15254_consen 394 SENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQ---SLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE 470 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555554 455555543111 22222322 23344555555443333 4455778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHH
Q 039797 163 NKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENE 242 (437)
Q Consensus 163 n~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~E 242 (437)
|+||...+.+-..-.. .-|.....=--+|+.+.+++......++ .+|++.|.|-.-- .-.|+-=+.|
T Consensus 471 nk~~~~~~~ekd~~l~---~~kq~~d~e~~rik~ev~eal~~~k~~q---~kLe~sekEN~iL-------~itlrQrDaE 537 (861)
T PF15254_consen 471 NKRLRKMFQEKDQELL---ENKQQFDIETTRIKIEVEEALVNVKSLQ---FKLEASEKENQIL-------GITLRQRDAE 537 (861)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhhHh-------hhHHHHHHHH
Confidence 9998877665433211 1111111111223333333333322222 2233333321110 1123444577
Q ss_pred HHHHHHHhHHHHHHHHHHHHhH
Q 039797 243 LKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 243 v~ELrr~nk~LQ~EK~eL~~kL 264 (437)
|.-||-.+..||.-..-|.--|
T Consensus 538 i~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 538 IERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888887666665533
No 301
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.55 E-value=5.5e+02 Score=29.02 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 290 LLNECEQLQKDRAAEAKELIYLRWANACLRHELM 323 (437)
Q Consensus 290 L~kqvEqLq~dR~seVEELVYLRWvNACLR~ELr 323 (437)
+.+--+.|...|..-.++ +.+|+-.||.
T Consensus 358 ~~~~A~~Ls~~R~~~A~~------L~~~v~~eL~ 385 (557)
T COG0497 358 LLEAAEALSAIRKKAAKE------LEKEVTAELK 385 (557)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 333344555555543333 4577778884
No 302
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=42.46 E-value=2.3e+02 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 239 LENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
.+..|.+|...|..|..|+..|..+|+++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666554
No 303
>PRK00736 hypothetical protein; Provisional
Probab=41.84 E-value=1.6e+02 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=16.3
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENK 164 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~ 164 (437)
.+.+||..+.--..-|+.|+..|..-+.+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~ 36 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666655555555555555554444433
No 304
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.62 E-value=4.6e+02 Score=28.64 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---h-------hHhhHHHHHHHHHhHhhhhHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHD---L-------KEQESLLMELRNMIFLEKSYVELL 152 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~---L-------KEQea~v~ELe~~L~~k~~Ei~~L 152 (437)
..-|.-.+..|..-++|=..-...|+.|-. + .-+-..|..||.+|....++++.|
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666666666652 1 222344566666666666666544
No 305
>smart00338 BRLZ basic region leucin zipper.
Probab=41.57 E-value=88 Score=24.37 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
...+..|..++..|+.+|..|..++..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666655544
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.54 E-value=4e+02 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 039797 282 TTMENYRQLLNECEQLQKD 300 (437)
Q Consensus 282 v~~e~~~~L~kqvEqLq~d 300 (437)
.++..|+.+...+++.+.+
T Consensus 289 ~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 289 LAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666533
No 307
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.37 E-value=4.9e+02 Score=28.09 Aligned_cols=178 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred cchhHHHHHhHHHHHHHhcccC------CCCCCCc-------------ccccccccCCCCccccccccCCCCc--chhhh
Q 039797 19 AGVPLAISVAGFICAKMMARKD------DKVSSLK-------------TDSYEKFRDDESCHSLNSTSSSFKE--DEEII 77 (437)
Q Consensus 19 ~g~~lalS~ag~i~ar~~~r~~------~~~~~~~-------------~d~~~~~~~~~~~h~~~~~~~~~~~--~~~~i 77 (437)
||.+|.=+++||--+=+-..+. ++-+|-. .++....+.+.. +.+..+.-...| +-+=.
T Consensus 105 v~~~ik~g~sg~s~~v~skPrEfA~likNkFGSADNI~sl~~~~~~~~~~~~~~~l~~s~-~~~~~~ky~S~d~SecSS~ 183 (395)
T PF10267_consen 105 VGGNIKGGLSGLSGAVVSKPREFAHLIKNKFGSADNISSLKDSLDEPNPDSGPRSLSGSS-TLTASPKYGSEDSSECSSV 183 (395)
T ss_pred ccccccCCCcchhHHHHhCcHHHHhcccCCCCCCCccccccccccccCCCCCCcCCCCCc-ccccccccCcccccccccC
Q ss_pred hcccccccCCcc-------cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHH
Q 039797 78 TSTHFMKSKGDL-------EFQDKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVE 150 (437)
Q Consensus 78 ~~~~~~~~~~~~-------~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~ 150 (437)
++...+.+.+.. ...-.......+..+.+-+.++++.-..|+..+-....-=-++
T Consensus 184 tS~S~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e------------------ 245 (395)
T PF10267_consen 184 TSGSIDANSNSSNSGGSSQGSSVSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQRE------------------ 245 (395)
T ss_pred CCCCCCCCCCCCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred HHHHHHHhHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhhh
Q 039797 151 LLDREVSSVESEN---KRLENLVVLYLKV-LDQLQQWKSESGLLKRKVKKL----VRKTKELSDIIREQNLKIE 216 (437)
Q Consensus 151 ~L~~kI~sLEsEn---~rL~~~v~e~~~v-~~ELe~ar~ki~~Lqrk~~~~----a~q~K~q~~~lkqqv~~l~ 216 (437)
+..-..+|++|. +||+++|.++.-+ ..|+...|..+..+..|+... ++.--+-+...+-++.+|+
T Consensus 246 -~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 246 -YQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 308
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.99 E-value=1.1e+02 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=24.1
Q ss_pred HHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 140 NMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 140 ~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
........++..+..++..++.+|.+|+.++.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455666677777777777777777777766544
No 309
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.94 E-value=2.4e+02 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWK 184 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar 184 (437)
.+...+..++..+..+...|..++.++..+.++|+...
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~ 47 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444555666666666777777777777777776553
No 310
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.75 E-value=5.2e+02 Score=28.22 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhhhhhHhhHHHHHHHHHhHhhhhHH-------HHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 039797 122 FARYHDLKEQESLLMELRNMIFLEKSYV-------ELLDREVSSVESENKRLENLVVLYLK-VLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 122 LLEy~~LKEQea~v~ELe~~L~~k~~Ei-------~~L~~kI~sLEsEn~rL~~~v~e~~~-v~~ELe~ar~ki~~Lqrk 193 (437)
...|..+-..+..+.+|...+..-...+ ..+...|......-..|..++.+... ....++.+ |+.+
T Consensus 212 ~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~------L~~q 285 (582)
T PF09731_consen 212 VEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERA------LEEQ 285 (582)
T ss_pred hhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Q ss_pred HHH-HHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHHhhhhc
Q 039797 194 VKK-LVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSV-IDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 194 ~~~-~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~-nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
-.. ......+....++++...+...-. .+++.+..+|+.. ..+|+. +|..+=+.....+
T Consensus 286 ~~e~~~~~~~~~~~~le~~~~~~~~~~~----------------~e~~~~~~~l~~~~~~~L~~---eL~~~~~~~~~~l 346 (582)
T PF09731_consen 286 REELLSKLREELEQELEEKRAELEEELR----------------EEFEREREELEEKYEEELRQ---ELKRQEEAHEEHL 346 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 272 SSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 272 ~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
......-.....++-...+...|++-+..|...+++|
T Consensus 347 ~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~ 383 (582)
T PF09731_consen 347 KNELREQAIELQREFEKEIKEKVEQERNGRLAKLAEL 383 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 311
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.74 E-value=2.9e+02 Score=25.40 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
+..|..-+..++++=..+..++....+- ...+...+.....+++.++..+..+..+-..|+
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKED------LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433321 112223344444455555555555555544444
No 312
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.74 E-value=3.6e+02 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 100 EILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 100 EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
.++.+...+.....-+...+.+.-.+.. +-..-..+++.+..+++.|+..|.+|+..+....
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~-------------e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDD-------------EKQELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443333 1112234445556666666666666665555443
No 313
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.50 E-value=1.7e+02 Score=31.12 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVLDQ-LQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~~E-Le~ar~ki~~Lqrk~~~~ 197 (437)
.+..++..|+++.+.+..++....+..++ .+.++.+.+.|+.+++..
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 88 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTEL 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666552222222 334444444444444433
No 314
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.40 E-value=3.7e+02 Score=26.43 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHhhhH
Q 039797 200 KTKELSDIIREQNLKIES 217 (437)
Q Consensus 200 q~K~q~~~lkqqv~~l~~ 217 (437)
.+..|++.|+.||..|+.
T Consensus 165 aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 165 AAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555543
No 315
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.06 E-value=4.5e+02 Score=27.28 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIRE 210 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkq 210 (437)
..|.|+=..-.=+|+.|..++..||+..--++.++.+ -..+|++.|..+..|+.++.....+-++.=.+|..
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e---K~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE---KIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666778999999999999999888887753 34567777777777777777666655555444443
No 316
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.78 E-value=4.5e+02 Score=27.27 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE------NLVVLYLKVLDQLQQWKSESGLLKRKV 194 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~------~~v~e~~~v~~ELe~ar~ki~~Lqrk~ 194 (437)
......|+.++..-..+++....++...+.+|.-+. .....+..+..++..++.+...++.+.
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKE 238 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777776666664321 112333444455555555544444433
No 317
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.67 E-value=6.4e+02 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=17.5
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESEN 163 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn 163 (437)
+.|||..+.....|++.++......++..
T Consensus 52 ~eEleaeyd~~R~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 52 LEELEAEYDLARTELDQTKEALGQYRSQH 80 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666667766666554444443
No 318
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.49 E-value=2.4e+02 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQW 183 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~a 183 (437)
+...|...+..|..+...|..++.++..+..+|..+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455556666667777777777777777777655
No 319
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.29 E-value=1.5e+02 Score=31.45 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 95 LHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 95 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
..+..++..|+..++.++++=.+|+..+..+..++.+...-++...++..-......+..++..|+.+...|++++
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888877777777776555554433322233333333333333334444444444444443333
No 320
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.71 E-value=2.5e+02 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 039797 144 LEKSYVELLDREVSSVESENKRLENLVVLYLKV--LDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 144 ~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v--~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
.-......+..+|..|+.....+.+.|+-|..+ +.|+|.....+..|..++.+..
T Consensus 89 lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 89 QLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778899999999999999988776 7888888888888877776653
No 321
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=38.56 E-value=1.8e+02 Score=26.24 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 239 LENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
.-..+.++|+.+.+|++---.+..+++.....
T Consensus 70 ~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33567788888888888888888888766553
No 322
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.27 E-value=1.7e+02 Score=24.08 Aligned_cols=31 Identities=39% Similarity=0.570 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 239 LENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+..-|.-||..+.+++.+..+|..+++.++.
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544443
No 323
>PRK10869 recombination and repair protein; Provisional
Probab=38.26 E-value=5.9e+02 Score=28.16 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=26.7
Q ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 223 LRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 223 ~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
....++++.+++.+.+.+....+|+.....+..+-.+++.+|..+..
T Consensus 323 ~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 323 PQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666666666665554443
No 324
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.19 E-value=68 Score=32.03 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh-----ccccccc-chhhhhHHHHHHHHHHHHHH
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQEWHQS-----ASSVTKI-EDEGTTMENYRQLLNECEQL 297 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~-----~~s~~~~-E~~~v~~e~~~~L~kqvEqL 297 (437)
.++.++..|.-.+++|.....++..|+++++.+ ...-.+. |....++++|..|-.|+|+.
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 325
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.98 E-value=4.9e+02 Score=27.14 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVL---DQLQQWKSESGLLKRKVKKLVRKTK 202 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~---~ELe~ar~ki~~Lqrk~~~~a~q~K 202 (437)
.+..+|+-|+.+.+.-+.+......+. +++...|.+-+.++.+|+..++++-
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655555555444444 6666777777777777777777663
No 326
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.82 E-value=71 Score=31.96 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=18.7
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
.|||.++.....++..|..+|++|+++|-+|=+.
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555666666666666665543
No 327
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.78 E-value=3.4e+02 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcc
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEWHQSAS 272 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~ 272 (437)
+-|..-+|...+|++||+-|-.-|.-|.-.++
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56778899999999999999999987776544
No 328
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.57 E-value=3.9e+02 Score=29.54 Aligned_cols=21 Identities=38% Similarity=0.227 Sum_probs=17.2
Q ss_pred hhhcchhHHHHHhHHHHHHHh
Q 039797 16 LLKAGVPLAISVAGFICAKMM 36 (437)
Q Consensus 16 ~lk~g~~lalS~ag~i~ar~~ 36 (437)
+||+=+|+++-+++||..+..
T Consensus 5 llk~L~~~v~~~~~~i~ik~~ 25 (472)
T TIGR03752 5 LLKVLVIPVILVVVLIGIKSF 25 (472)
T ss_pred cceehHHHHHHHHHHhheeec
Confidence 468888999999999987766
No 329
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=37.30 E-value=6.6e+02 Score=28.44 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYH------DLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~------~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
.+.|+.-++.+.+.-..|..+-+-|. --|||.. +-.+..+|.--|+.+..+...|.+.=.|+.|++++ ..
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~-y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee---~s 236 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQL-YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEE---NS 236 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 45566666666665555555433322 2233332 22334444444444444444444444444433332 23
Q ss_pred HHHHHHHHHHHHHHHH
Q 039797 175 KVLDQLQQWKSESGLL 190 (437)
Q Consensus 175 ~v~~ELe~ar~ki~~L 190 (437)
++..+|.-++.|++.+
T Consensus 237 kLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3444444444444443
No 330
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=37.27 E-value=4.2e+02 Score=27.96 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhh-hhhhHhhHHHHHHHHH-----------hHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 114 RELETKMQFARY-HDLKEQESLLMELRNM-----------IFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 114 RE~~LE~eLLEy-~~LKEQea~v~ELe~~-----------L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
|.-.+...|+|. |+ ...+.+|..- -.+....|-.|..+|..|+.+-..++. ++..+.+.|.
T Consensus 134 rSEAFKRKllE~kYD----~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~---eL~~~~k~L~ 206 (323)
T PF08537_consen 134 RSEAFKRKLLEKKYD----KRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEK---ELEITKKDLK 206 (323)
T ss_pred HHHHHHHHHHHHHhH----HHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 445566677776 66 6667666542 223345667777777777665544444 4455788888
Q ss_pred HHHHHHHHHHH
Q 039797 182 QWKSESGLLKR 192 (437)
Q Consensus 182 ~ar~ki~~Lqr 192 (437)
.|+.|+.+||-
T Consensus 207 faqekn~Llqs 217 (323)
T PF08537_consen 207 FAQEKNALLQS 217 (323)
T ss_pred HHHHHHHHHHH
Confidence 88888888887
No 331
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.14 E-value=4.5e+02 Score=26.52 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039797 100 EILNLRFQIEELQKRELETKMQFARYH 126 (437)
Q Consensus 100 EI~~Lr~lVeeLqERE~~LE~eLLEy~ 126 (437)
+-..+...+..|+.+=.+|+.++..+-
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVARLR 101 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777775543
No 332
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=36.95 E-value=5.9e+02 Score=27.79 Aligned_cols=24 Identities=8% Similarity=0.168 Sum_probs=15.7
Q ss_pred cchhhhhcchhHHHHHhHHHHHHH
Q 039797 12 IKPVLLKAGVPLAISVAGFICAKM 35 (437)
Q Consensus 12 ~kp~~lk~g~~lalS~ag~i~ar~ 35 (437)
|+-+||=+.+-=.|=+.||++.-+
T Consensus 25 lryfFlF~SLIQ~LIIlgLVLFmV 48 (442)
T PF06637_consen 25 LRYFFLFVSLIQFLIILGLVLFMV 48 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777776666666777766443
No 333
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=36.92 E-value=85 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
|..|+..++.||.+-++|++-+..|-++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999888763
No 334
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=36.57 E-value=5.9e+02 Score=27.67 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQI---EELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 96 ~~~~EI~~Lr~lV---eeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
+++.-++.|..+. +.+|++-..|=.-+ =+.+-..|..||..-....-....=+.-..-||.|.++|+.|+.=
T Consensus 83 ct~spl~iL~~mM~qcKnmQe~~~s~LaAa-----E~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEF 157 (561)
T KOG1103|consen 83 CTESPLDILDKMMAQCKNMQENAASLLAAA-----EKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEF 157 (561)
T ss_pred eccChhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 34454443321111 123344455555555444444444444456677777777777665
Q ss_pred HHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSE 186 (437)
Q Consensus 173 ~~~v~~ELe~ar~k 186 (437)
.-.-++..|.++.|
T Consensus 158 e~~e~kK~E~~k~K 171 (561)
T KOG1103|consen 158 EIEEKKKAEIAKDK 171 (561)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 335
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.88 E-value=6.5e+02 Score=30.15 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLK-VLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIRE 210 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~-v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkq 210 (437)
|...+.-++.|..+|.+++..... ..+.-+.-+.|++.|..++..+..+-..|.-+++.
T Consensus 514 le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~ 573 (913)
T KOG0244|consen 514 LEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKP 573 (913)
T ss_pred HHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence 444555567777777777766666 33333556666777777766666655555444433
No 336
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=35.76 E-value=5.5e+02 Score=27.06 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHH
Q 039797 157 SSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAI 236 (437)
Q Consensus 157 ~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l 236 (437)
..|+.+-.-+.+--++...++.+|+.+|....+|=+. -.+|-|.-++++|.+.+. .++.+-+
T Consensus 6 q~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~-------------rVrq~V~hVqaqEreLLe---~v~~rYq-- 67 (324)
T PF12126_consen 6 QALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRA-------------RVRQVVAHVQAQERELLE---AVEARYQ-- 67 (324)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHHHHHH---HHHHHHH--
Confidence 4577777777888888888899999998887776440 123334455556666553 2222222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH--HHHHhHHHhhhhcccccccc---hhhhhHHHHHHHHHHH-----HHHhhhhHHHHH
Q 039797 237 QKLENELKELHSVIDQLQEQNS--ELLNKLQEWHQSASSVTKIE---DEGTTMENYRQLLNEC-----EQLQKDRAAEAK 306 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~--eL~~kL~~Ae~~~~s~~~~E---~~~v~~e~~~~L~kqv-----EqLq~dR~seVE 306 (437)
++-+.=+-+|.+.+.-||-=.. .|+.|+. . |.+.-| .-.-+++...+|.++- ..++.|-|++..
T Consensus 68 R~y~ema~~L~~LeavLqRir~G~~LVekM~---~---YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k 141 (324)
T PF12126_consen 68 RDYEEMAGQLGRLEAVLQRIRTGGALVEKMK---L---YASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFK 141 (324)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH---H---hcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHH
Confidence 1233333455555555553221 3444442 1 222222 2223455555555432 455666777764
Q ss_pred HHHHHHHHHHHHH
Q 039797 307 ELIYLRWANACLR 319 (437)
Q Consensus 307 ELVYLRWvNACLR 319 (437)
|-|-=+-+|.-
T Consensus 142 --~rLQ~L~scIt 152 (324)
T PF12126_consen 142 --ARLQDLVSCIT 152 (324)
T ss_pred --HHHHHHHHHHh
Confidence 44445556654
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.75 E-value=6.1e+02 Score=29.41 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
++.-|+.|+.+...++.+..+......+++..+.++.....
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~ 553 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEME 553 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555554554444444444444444444433333
No 338
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.53 E-value=9.9e+02 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHHHHHH
Q 039797 246 LHSVIDQLQEQNSELL 261 (437)
Q Consensus 246 Lrr~nk~LQ~EK~eL~ 261 (437)
-|+.-.+|+.+-+.|.
T Consensus 1687 ar~rAe~L~~eA~~Ll 1702 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLL 1702 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555554
No 339
>PRK00846 hypothetical protein; Provisional
Probab=35.47 E-value=2.2e+02 Score=24.07 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=38.6
Q ss_pred HhhhhhHHHHhh----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 222 LLRNCDVLEEKS----NAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 222 ~~~~~~e~E~Kl----~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+..+..++|.|+ ..+.+|-..|.+..+....|+.+.+-|+.||.+++.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555666663 357788899999999999999999999999999884
No 340
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.39 E-value=4e+02 Score=28.78 Aligned_cols=8 Identities=63% Similarity=0.808 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 039797 135 LMELRNMI 142 (437)
Q Consensus 135 v~ELe~~L 142 (437)
+.+|+.+|
T Consensus 73 ~~~l~~~l 80 (525)
T TIGR02231 73 LAELRKQI 80 (525)
T ss_pred HHHHHHHH
Confidence 44444443
No 341
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.22 E-value=2.5e+02 Score=27.51 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=29.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLD 153 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~ 153 (437)
..|...+.-.+...++.|+..+.+|..-|-.= .....+.++|++|..-..+|+.+.
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka----~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKA----KTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667776666665554322211 134445666666544444433333
No 342
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.08 E-value=5.2e+02 Score=26.61 Aligned_cols=15 Identities=33% Similarity=0.158 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQK 113 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqE 113 (437)
.=++.|-.+|.+|+.
T Consensus 126 ~yLe~Lc~IIqeLq~ 140 (269)
T PF05278_consen 126 YYLECLCDIIQELQS 140 (269)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455566666666655
No 343
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.00 E-value=2.3e+02 Score=32.37 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHhHHHH
Q 039797 144 LEKSYVELLDREVSSVESE 162 (437)
Q Consensus 144 ~k~~Ei~~L~~kI~sLEsE 162 (437)
.-+++|..++.+|+.|+.+
T Consensus 104 el~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3355566666666655444
No 344
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.71 E-value=2.9e+02 Score=23.59 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 039797 178 DQLQQWKSESGLL 190 (437)
Q Consensus 178 ~ELe~ar~ki~~L 190 (437)
.+++......++|
T Consensus 14 ~el~~t~~d~~LL 26 (99)
T PF10046_consen 14 SELEATNEDYNLL 26 (99)
T ss_pred HhHHHHHHHHHHH
Confidence 3344444444333
No 345
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.69 E-value=4.5e+02 Score=25.70 Aligned_cols=58 Identities=24% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ-QWKSESGLLKR 192 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe-~ar~ki~~Lqr 192 (437)
+..|+.++..-....+.+...+.+++.+...|+.++........++. .+...+..|+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666777777777777777777777766666663 33333444433
No 346
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.46 E-value=1.4e+02 Score=22.52 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=16.8
Q ss_pred HHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 139 RNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 139 e~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
|.....-...-+.|...-.+|..||..|+++|..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555555555555555544
No 347
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.44 E-value=5.8e+02 Score=28.58 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHhhhhHH
Q 039797 133 SLLMELRNMIFLEKSYV 149 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei 149 (437)
..+.++++.++......
T Consensus 164 ~~~~~~~~~~k~~~~~w 180 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKW 180 (555)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444443
No 348
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=34.33 E-value=3.2e+02 Score=30.94 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHH
Q 039797 163 NKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENE 242 (437)
Q Consensus 163 n~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~E 242 (437)
.+-++++-.+|..+-+.++.+..+++.|..+++....+.=.....+..| -.+|.+..+.+..+=..-+++..|=..
T Consensus 507 k~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~q----I~qEYeki~~dp~y~eeK~RceYLhsK 582 (604)
T KOG4796|consen 507 KKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQ----ILQEYEKIRKDPNYMEEKQRCEYLHSK 582 (604)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH----HHHHHHHhhcCccHHHHHHHHHHHHHH
Confidence 3667888999999999999999999999999994333222222222222 334555555555555555555566666
Q ss_pred HHHHHHHhHHHHH
Q 039797 243 LKELHSVIDQLQE 255 (437)
Q Consensus 243 v~ELrr~nk~LQ~ 255 (437)
..-+++..-+...
T Consensus 583 LaHIK~lI~efDk 595 (604)
T KOG4796|consen 583 LAHIKTLIGEFDK 595 (604)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555544433
No 349
>PRK11281 hypothetical protein; Provisional
Probab=33.76 E-value=9.7e+02 Score=29.32 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYH 126 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~ 126 (437)
..+.+.|+..+....++=.....+|.++.
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34555666666665555555555555444
No 350
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=33.59 E-value=4.8e+02 Score=27.89 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH--HHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL--VVLYLK 175 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~--v~e~~~ 175 (437)
..=+..|+++|..|.---.+||.+|+- +|..-.. .-..+..--.+++.|.+||+.. .....+
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q-------------~Ee~hq~---kKrk~~estdsf~~eLKr~c~~kvevd~eK 283 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQ-------------IEERHQE---KKRKFLESTDSFNNELKRLCGLKVEVDMEK 283 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHhccHHHHHHHHHhcCCcccccHHH
Confidence 456889999999999999999999982 1221111 1122344456788888888843 334445
Q ss_pred HHHHHHHHHHHH
Q 039797 176 VLDQLQQWKSES 187 (437)
Q Consensus 176 v~~ELe~ar~ki 187 (437)
+..++..|-.+.
T Consensus 284 ~~~~i~q~eeq~ 295 (410)
T KOG4715|consen 284 MAAEIAQAEEQA 295 (410)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 351
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=33.56 E-value=33 Score=29.56 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 039797 310 YLRWANACLRHELMRNQAQQ 329 (437)
Q Consensus 310 YLRWvNACLR~ELrn~~~~~ 329 (437)
-=|-||+||+.|+.+.++-.
T Consensus 51 rHRlVN~~L~Eeik~iHalt 70 (85)
T KOG3348|consen 51 RHRLVNSILAEEIKEIHALT 70 (85)
T ss_pred HHHHHHHHHHHHHHHHhhhe
Confidence 34779999999999988843
No 352
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.53 E-value=1.4e+02 Score=25.86 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHhhh-HHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 210 EQNLKIE-SADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLN 262 (437)
Q Consensus 210 qqv~~l~-~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~ 262 (437)
++|..|. .-|....++.++++.. +..|..|+..|+....--..||.+|..
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e---~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENE---NKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 1222222344444433 235555666666555555556666654
No 353
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.43 E-value=2.1e+02 Score=26.53 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH-------------HHHHhH-----------------hhhhH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLME-------------LRNMIF-----------------LEKSY 148 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~E-------------Le~~L~-----------------~k~~E 148 (437)
.++..++..++.|+..-..|+.-..+|..-++.-..+.. ....+. --..=
T Consensus 10 ~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA 89 (144)
T PRK14011 10 MALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEV 89 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHH
Confidence 355666777777777777777777777543332221100 000000 00123
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVLDQLQQW 183 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~a 183 (437)
+++|+++|+-|+.-...|...+.+......+|...
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889888888888888887777777766543
No 354
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.43 E-value=5e+02 Score=25.86 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 039797 238 KLENELKELHSV 249 (437)
Q Consensus 238 ~LE~Ev~ELrr~ 249 (437)
.|-.+|.+||+.
T Consensus 92 ~Lk~~in~~R~e 103 (230)
T PF10146_consen 92 PLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHH
Confidence 444555555543
No 355
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.35 E-value=9.8e+02 Score=29.28 Aligned_cols=20 Identities=30% Similarity=0.208 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 039797 287 YRQLLNECEQLQKDRAAEAK 306 (437)
Q Consensus 287 ~~~L~kqvEqLq~dR~seVE 306 (437)
+.+|.+++-.|+-.||.--+
T Consensus 335 ~~~l~~~IAdlRl~~f~~~q 354 (1109)
T PRK10929 335 PQQLDTEMAQLRVQRLRYED 354 (1109)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 35688888888888886433
No 356
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.22 E-value=2.2e+02 Score=27.94 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHhhHHHHHHHHHHHHhhhH
Q 039797 197 LVRKTKELSDIIREQNLKIES 217 (437)
Q Consensus 197 ~a~q~K~q~~~lkqqv~~l~~ 217 (437)
+....+..+..+.+||-+|+.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~ 181 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLES 181 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 344557788888888888873
No 357
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.09 E-value=1.1e+02 Score=25.46 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHH
Q 039797 93 DKLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREV 156 (437)
Q Consensus 93 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI 156 (437)
+..|....+..||..+...+.-=..|.+ =-+...||+..+..|+.++..+..-+..|...+
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777777766655544333333 124568899999999998888888777776543
No 358
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=33.04 E-value=6.1e+02 Score=26.76 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.|..++..|+.+|.+|+.++..+
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~ 163 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKL 163 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667788888888887766543
No 359
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=32.74 E-value=5.9e+02 Score=26.54 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
.++.....+...+.+.+|.+...........+++.++......+.
T Consensus 128 ~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a 172 (390)
T PRK15136 128 NIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQA 172 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 344444455556666677777776666667777777666554444
No 360
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=32.50 E-value=6e+02 Score=28.00 Aligned_cols=38 Identities=11% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
..+-+||+.+.+|.+|.+||..+..--.-|-++|+.-+
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~ 387 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIA 387 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998888888888543
No 361
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.31 E-value=4.2e+02 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHH
Q 039797 292 NECEQLQKDRAAEAKELIYL-RWANACLRHEL 322 (437)
Q Consensus 292 kqvEqLq~dR~seVEELVYL-RWvNACLR~EL 322 (437)
.++--|--+--.+|-=+.|| -|.=+|.-..|
T Consensus 202 ~~l~~l~~~~~~~Is~~~~lt~~~~~c~~~dl 233 (292)
T KOG4005|consen 202 TLLDMLGVDEEFDISRLEELTESLLACITADL 233 (292)
T ss_pred HHHHHHccchhhhHHHHHHHHHHHHHHhhhcc
Confidence 33333444444555556666 48999988887
No 362
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.27 E-value=7.2e+02 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 104 LRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 104 Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
|-++--++.+|=..|+.+|..+| ..+-.+-.|+.+..++.+-+..++.-.|.+..+|+++..+..
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~------k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCE------KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666667777666554 456666777777788888888888888888888887776654
No 363
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.13 E-value=4.4e+02 Score=24.92 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHh--HhhhhH---HHHHHHHHHhHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMI--FLEKSY---VELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L--~~k~~E---i~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
....|..++..|-...-....|+.++-++- ..+.+++.+. .++..+ ...+-.++..++.+-..|+.++.
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~------~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAE------EEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655443 3334444333 222222 12233355566666666665555
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 039797 172 LYLKV----LDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 172 e~~~v----~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..... ...|..++.++..++.+....
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 334445555555555554443
No 364
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.08 E-value=3e+02 Score=24.28 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+.+|-..|.+|=--|..|+.||..|-.+|.-.+.
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677888888899999999999999876654
No 365
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.05 E-value=7.2e+02 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
...|+.+|+--..+-..|+-..-||.++.+-|++-
T Consensus 146 ~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s 180 (499)
T COG4372 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555533
No 366
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.94 E-value=1.2e+02 Score=22.96 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
...+..|...+..|+.+|..|+.++..+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888887766654
No 367
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.90 E-value=7.4e+02 Score=27.42 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039797 155 EVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNL 213 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~ 213 (437)
.+...+..+..+.+.+...-.+.+.=-.||..+......+.....+.+.+...|...+.
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~ 330 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE 330 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655555544555555555555555555555555555444333
No 368
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=31.90 E-value=33 Score=29.22 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.3
Q ss_pred cchhHHHHHhHHHHHHHh
Q 039797 19 AGVPLAISVAGFICAKMM 36 (437)
Q Consensus 19 ~g~~lalS~ag~i~ar~~ 36 (437)
||+-.+|.|||+||+-.|
T Consensus 64 Vgvl~~laVaGlI~~l~R 81 (83)
T PF05356_consen 64 VGVLVILAVAGLIYSLLR 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678888999999998665
No 369
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.51 E-value=7.8e+02 Score=27.53 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
..+..++.....++.+..++..+|..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666666677777777777777654
No 370
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.31 E-value=4.4e+02 Score=24.61 Aligned_cols=13 Identities=0% Similarity=0.084 Sum_probs=5.3
Q ss_pred chhHHHHHhHHHH
Q 039797 20 GVPLAISVAGFIC 32 (437)
Q Consensus 20 g~~lalS~ag~i~ 32 (437)
++.+.+.+.++++
T Consensus 50 ~~~~~~~~~~~lf 62 (192)
T PF05529_consen 50 VFKILLAILLLLF 62 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 371
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.31 E-value=5.8e+02 Score=26.04 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNS 258 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~ 258 (437)
+.+|+.++-.||+.+.+|+.+-.
T Consensus 202 i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 202 IDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788888888888888877655
No 372
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=30.92 E-value=30 Score=30.27 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHH
Q 039797 309 IYLRWANACLRHEL 322 (437)
Q Consensus 309 VYLRWvNACLR~EL 322 (437)
||=+||.+|..-.|
T Consensus 65 VY~~wiD~~~eg~i 78 (99)
T PRK14892 65 VYNKFIDLYLEGKI 78 (99)
T ss_pred hHHHHHHHHHhcCC
Confidence 89999999998887
No 373
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.62 E-value=3.6e+02 Score=28.88 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccc
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASS 273 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s 273 (437)
++|+.+...|.+....||..-.=|..|...|..++.+
T Consensus 249 ~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 4677777777777788888887888887777776655
No 374
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=30.60 E-value=7e+02 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=20.1
Q ss_pred ccccCCcccHHHHHHHHH-HHHHHHHHHH
Q 039797 89 LEFQDKLHYELEILNLRF-QIEELQKREL 116 (437)
Q Consensus 89 ~~~~~~~~~~~EI~~Lr~-lVeeLqERE~ 116 (437)
.++....|.+.=|..++. .|-++++|=.
T Consensus 101 gdts~~iD~EAs~~e~~Dskv~Eveekyk 129 (405)
T KOG2010|consen 101 GDTSSLIDPEASLSELRDSKVSEVEEKYK 129 (405)
T ss_pred CCcccccChHHHHHHHhhhhhHHHHHHHH
Confidence 345556667777888888 8888888743
No 375
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.45 E-value=7.7e+02 Score=27.16 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYL-KVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLE 230 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~-~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E 230 (437)
+..-|.+|++.-..|+.++.... ++.+-++.++--+...+.. .-.--++..+|++.|.-++..+.+....-.-+.
T Consensus 221 l~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~----~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~ 296 (446)
T KOG4438|consen 221 LKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSA----MVELQEKAKILEEKVTNLQTIEKELKALLKKIS 296 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555665554432 2222223222222222221 112234445778888888887777654333333
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 039797 231 EKSNAIQKLENELKELHS 248 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr 248 (437)
.-......+|-.+++|++
T Consensus 297 ~~~~e~d~~Et~~v~lke 314 (446)
T KOG4438|consen 297 SDGVEYDSLETKVVELKE 314 (446)
T ss_pred HhhhhhhhhHHHHHHHHH
Confidence 333334566666666654
No 376
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.33 E-value=76 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
|..|+..|..|++|..||.+++.--
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667788888888888776543
No 377
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.14 E-value=5.5e+02 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 131 QESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 131 Qea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
+--.+.+.-++|..--.||..|..--..|+.+|+.|++.
T Consensus 39 ~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 39 HGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666667777777777777777777754
No 378
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=30.04 E-value=7.6e+02 Score=29.47 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=44.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHhhhhcccc----cccchhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 243 LKELHSVIDQLQEQNSELLNKLQEWHQSASSV----TKIEDEGTTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 243 v~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~----~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
+.-|-++|..++.++-+|..+|+.|+..+..+ -+..+. .....+...++|...+.|+.-||.+
T Consensus 857 ~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~~l~~~---e~~~k~~l~~le~~~~~~~k~ve~~ 923 (948)
T KOG4436|consen 857 IAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVEQLLEH---ENKLKRALQTLEDEDRARRKTVETL 923 (948)
T ss_pred ccccccchhhhHhhhhhhhhhhccccchhhHHHHHhhhhhcc---hHHHHHHHhcccchhHHHHhhHHHH
Confidence 55566788999999999999999988764332 111111 1223467888888889898888875
No 379
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=29.81 E-value=30 Score=27.55 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=19.1
Q ss_pred hcccchhhhhcch--------hHHHHHhHHHHHH
Q 039797 9 QAIIKPVLLKAGV--------PLAISVAGFICAK 34 (437)
Q Consensus 9 e~~~kp~~lk~g~--------~lalS~ag~i~ar 34 (437)
.|. .||+||=|+ ..+|++.|.+++=
T Consensus 15 ~ng-~PV~LKGG~~D~~LYr~Tm~L~~vG~~~~~ 47 (55)
T cd00928 15 DDG-LPVHLKGGVVDRILYRLTMALTVVGTGYSL 47 (55)
T ss_pred CCC-ceEEecCCchhHHHHHHHHHHHHHhHHHHH
Confidence 455 799999887 4788888887763
No 380
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.81 E-value=5.6e+02 Score=26.30 Aligned_cols=83 Identities=23% Similarity=0.182 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHh---hhhhHHHHhhHHHHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELL---RNCDVLEEKSNAIQKLENELKELHSV 249 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~---~~~~e~E~Kl~~l~~LE~Ev~ELrr~ 249 (437)
...++.||...=-+...|.+|+.+. .++|+.+|.+|...|..++...- .-|++ ....+-.|--||.+.
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~q~~k~---~~~qv~~in~qlErLRL~krrlQl~g~Ld~~------~q~~~~ae~seLq~r 229 (289)
T COG4985 159 GDPLERELQKRLLEVETLRDQVDKM---VEQQVRVINSQLERLRLEKRRLQLNGQLDDE------FQQHYVAEKSELQKR 229 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccccHH------HHHHHHHHHHHHHHH
Confidence 4555566655555555566655554 34677777777776665443211 11222 235666777788888
Q ss_pred hHHHHHHHHHHHHhH
Q 039797 250 IDQLQEQNSELLNKL 264 (437)
Q Consensus 250 nk~LQ~EK~eL~~kL 264 (437)
.+.||.+-+-|-.-+
T Consensus 230 ~~~l~~~L~~L~~e~ 244 (289)
T COG4985 230 LAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHhhhh
Confidence 888887777665444
No 381
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.59 E-value=9.4e+02 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=9.5
Q ss_pred hHHHHhhhhhcCCCC
Q 039797 383 RLLKRLKRWVDGSEK 397 (437)
Q Consensus 383 ~Li~KLKkWv~gkek 397 (437)
-|-+.+..|......
T Consensus 735 ~Lr~~v~~~L~~~~~ 749 (771)
T TIGR01069 735 KLRKGVQELLKNHPK 749 (771)
T ss_pred HHHHHHHHHhcCCcc
Confidence 355667777776543
No 382
>PLN02678 seryl-tRNA synthetase
Probab=29.56 E-value=3.2e+02 Score=29.71 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=5.9
Q ss_pred HHHHHHHHhhh
Q 039797 316 ACLRHELMRNQ 326 (437)
Q Consensus 316 ACLR~ELrn~~ 326 (437)
.|-|+|--.|.
T Consensus 263 ~cfR~Eags~G 273 (448)
T PLN02678 263 TCFRKEAGSHG 273 (448)
T ss_pred cccccccccCC
Confidence 46666664433
No 383
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.50 E-value=1.1e+02 Score=23.68 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
|..||..|..|+.+=..|+.-|..|.-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998864
No 384
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.39 E-value=1.3e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
-|+.|...|..|++|..|+++.+..-...+
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888899999888888776655443
No 385
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.28 E-value=8.2e+02 Score=27.09 Aligned_cols=46 Identities=35% Similarity=0.472 Sum_probs=31.5
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 224 RNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 224 ~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
.-.+-+|+-..+-+.++.....+......+..++++|...++-...
T Consensus 289 ~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 289 QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666777777777777777778777777765544
No 386
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.16 E-value=4.1e+02 Score=23.54 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 039797 100 EILNLRFQIEELQKRELETKMQFARYHDLKE 130 (437)
Q Consensus 100 EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKE 130 (437)
.+..|+..+..|+..-..|+..+-+|...++
T Consensus 14 ~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e 44 (140)
T PRK03947 14 QLQALQAQIEALQQQLEELQASINELDTAKE 44 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666655543
No 387
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=2.6e+02 Score=23.60 Aligned_cols=45 Identities=36% Similarity=0.412 Sum_probs=36.5
Q ss_pred hhHHHHh----hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 226 CDVLEEK----SNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 226 ~~e~E~K----l~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
..++|.| .+.|.+|=.-+.|.+....++|.+-+-|+.|+..-+..
T Consensus 10 i~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 10 IIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444 34678898999999999999999999999999877653
No 388
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.58 E-value=1.7e+02 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 145 EKSYVELLDREVSSVESENKRLE--NLVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 145 k~~Ei~~L~~kI~sLEsEn~rL~--~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
...+...|..+|..|..|...+. ++.+.+.++..++..+..++..++.....
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665543 77888888888888887777777664443
No 389
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.53 E-value=7e+02 Score=26.07 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHhhhHHhHHHhhhhhHHHHhhH
Q 039797 164 KRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKE---------LSDIIREQNLKIESADAELLRNCDVLEEKSN 234 (437)
Q Consensus 164 ~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~---------q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~ 234 (437)
..|+.++.-+. ...|+....+++.|..++.......+. .+..|=+.+..++ -...-.+.+=.||+
T Consensus 249 ~~L~~~lslL~--~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~----~~~~~lP~lv~RL~ 322 (388)
T PF04912_consen 249 NELERQLSLLD--PAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWD----PYAPSLPSLVERLK 322 (388)
T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH----HHhhhhhHHHHHHH
Confidence 44444444432 235677777777777777655432211 1111111111111 11223456667888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccc
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSV 274 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~ 274 (437)
.|+.|=.++.+.-.....|...-.++..-|..++..+..+
T Consensus 323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~v 362 (388)
T PF04912_consen 323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKV 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888888887655444
No 390
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.49 E-value=4.9e+02 Score=24.21 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhh
Q 039797 288 RQLLNECEQLQKDR 301 (437)
Q Consensus 288 ~~L~kqvEqLq~dR 301 (437)
..|-.||+.||.++
T Consensus 119 ~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 119 KGLDEQIKALKESD 132 (155)
T ss_pred ccHHHHHHHHHhcC
Confidence 45778888887765
No 391
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.18 E-value=4.9e+02 Score=24.18 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHh
Q 039797 236 IQKLENELKELHSVI 250 (437)
Q Consensus 236 l~~LE~Ev~ELrr~n 250 (437)
+..|+..+..|+...
T Consensus 118 ~~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 118 LKGLDEQIKALKESD 132 (155)
T ss_pred cccHHHHHHHHHhcC
Confidence 445555555555443
No 392
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.14 E-value=9.8e+02 Score=27.66 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccccc-ccchhh-----hhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVT-KIEDEG-----TTMENYRQLLNECEQLQKDRAAEAKEL 308 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~-~~E~~~-----v~~e~~~~L~kqvEqLq~dR~seVEEL 308 (437)
.++.|..+..+.-.....|..+-.+|=.+|++......-+- ..++++ ..-+-...+.++|..|+.=+..-+.||
T Consensus 234 ~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKel 313 (660)
T KOG4302|consen 234 MVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKEL 313 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777777777777888888888888877644322111 012222 122334456688888888888889999
Q ss_pred HHHHHH
Q 039797 309 IYLRWA 314 (437)
Q Consensus 309 VYLRWv 314 (437)
|.-+|+
T Consensus 314 i~k~r~ 319 (660)
T KOG4302|consen 314 IEKKRS 319 (660)
T ss_pred HHHHHH
Confidence 998875
No 393
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.09 E-value=2e+02 Score=28.09 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
..+|..|-..|++|+.--+-+ ++.+.+|..+| ++..||.+-+.|..+++.+..-.
T Consensus 85 d~~i~~l~ek~q~l~~t~s~v-------------eaEik~L~s~L------------t~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYV-------------EAEIKELSSAL------------TTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhc------------ChHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555443333 45566666665 45566666666666666665444
Q ss_pred HHH
Q 039797 178 DQL 180 (437)
Q Consensus 178 ~EL 180 (437)
.-|
T Consensus 140 ~~~ 142 (201)
T KOG4603|consen 140 KNI 142 (201)
T ss_pred HHH
Confidence 433
No 394
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.08 E-value=5.4e+02 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
+.|+.++.+|+..|..|+.++..|..++...+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766664433
No 395
>PF14992 TMCO5: TMCO5 family
Probab=27.99 E-value=6e+02 Score=26.33 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhh----------HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039797 190 LKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCD----------VLEEKSNAIQKLENELKELHSVIDQLQEQNSE 259 (437)
Q Consensus 190 Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~----------e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~e 259 (437)
|.++.+..-+.+-.-+..++..--.++..+.|+.+-+. =++.+-.++++||-+-.-|.+.|.-|-+--.+
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhh
Confidence 34444444444444444555544455555555442111 12334455677777776666666666444444
Q ss_pred HHHhHHHhhhh-------cccccccchhhh---hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039797 260 LLNKLQEWHQS-------ASSVTKIEDEGT---TMENYRQLLNECEQLQKDRAAEAKELIYLRWANACLRHELMRNQAQQ 329 (437)
Q Consensus 260 L~~kL~~Ae~~-------~~s~~~~E~~~v---~~e~~~~L~kqvEqLq~dR~seVEELVYLRWvNACLR~ELrn~~~~~ 329 (437)
|-.+++--+.. ++... .++... +.+++..+-+|++.+.. |+.+ |+.-=.||| |+++.|+.--
T Consensus 89 lq~k~~e~~~~~~~e~~~~~~~l-q~sk~~lqql~~~~~~qE~ei~kve~----d~~~-v~~l~eDq~--~~i~klkE~L 160 (280)
T PF14992_consen 89 LQRKQDEQETNVQCEDPQLSQSL-QFSKNKLQQLLESCASQEKEIAKVED----DYQQ-VHQLCEDQA--NEIKKLKEKL 160 (280)
T ss_pred hhhhhccccCCCCCCccchhccc-HHhhhhHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHH--HHHHHHHHHH
Confidence 44444322111 11110 122221 33455566677766655 3333 333347777 5666776644
No 396
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.73 E-value=8.5e+02 Score=26.76 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=30.7
Q ss_pred hhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 125 YHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 125 y~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
|.|+.+....+..+...+.....++..+......++.+...|+.++.++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 153 FAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 4455555555555555665555566666666666666666666666655555
No 397
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=27.70 E-value=4.9e+02 Score=26.79 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=7.8
Q ss_pred hHHHHHHH--hcc
Q 039797 28 AGFICAKM--MAR 38 (437)
Q Consensus 28 ag~i~ar~--~~r 38 (437)
-|++|.|. +.|
T Consensus 40 eglv~YWe~~~kk 52 (264)
T PF07246_consen 40 EGLVYYWEEEMKK 52 (264)
T ss_pred hHHHHHHHHHHHH
Confidence 48899994 444
No 398
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.61 E-value=2.5e+02 Score=24.47 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..++..|+.+|..|+.++..
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 399
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.60 E-value=6.3e+02 Score=25.23 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=5.7
Q ss_pred HHHHHHHhcc
Q 039797 29 GFICAKMMAR 38 (437)
Q Consensus 29 g~i~ar~~~r 38 (437)
-||.|+++.+
T Consensus 58 lfiDsvr~i~ 67 (216)
T KOG1962|consen 58 LFIDSVRRIQ 67 (216)
T ss_pred HHHHHHHHHH
Confidence 3566666544
No 400
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.49 E-value=4e+02 Score=22.86 Aligned_cols=33 Identities=15% Similarity=0.418 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHhhhhccc
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEWHQSASS 273 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s 273 (437)
.++..++.....|+.+|..|..-..+++.++++
T Consensus 39 ~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 39 QEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 401
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.48 E-value=1.4e+02 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
+.++..+|+.+|.||-++|.|++.+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~L 27 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKEL 27 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888766654
No 402
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.22 E-value=1.4e+02 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVV 171 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~ 171 (437)
....|+-|+.||..|.+++.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666553
No 403
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.20 E-value=1.3e+02 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhh
Q 039797 287 YRQLLNECEQLQKD 300 (437)
Q Consensus 287 ~~~L~kqvEqLq~d 300 (437)
|.+|..+|+.|++|
T Consensus 50 n~~L~~eI~~L~~~ 63 (105)
T PRK00888 50 NDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHhhCc
Confidence 35556666666665
No 404
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.07 E-value=2.4e+02 Score=23.44 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
+++.|..+..|+.-|=.|-....-|-.+|
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44555555554444444444444444444
No 405
>PRK10698 phage shock protein PspA; Provisional
Probab=26.99 E-value=6e+02 Score=24.81 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
...+..+|..+-...-...+++.++-++-.
T Consensus 37 ~~~l~~~r~alA~~~A~~k~~er~~~~~~~ 66 (222)
T PRK10698 37 EDTLVEVRSTSARALAEKKQLTRRIEQAEA 66 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666665555543
No 406
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.97 E-value=53 Score=33.04 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 039797 154 REVSSVESENKRLENLVVLYLKVLD 178 (437)
Q Consensus 154 ~kI~sLEsEn~rL~~~v~e~~~v~~ 178 (437)
.||..||.|..+|++|++.+..+.+
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5899999999999999998877655
No 407
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.94 E-value=6.9e+02 Score=25.72 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLK 214 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~ 214 (437)
.....|+..-.+.++.-.+++..+..++|.....++-.+..
T Consensus 201 ~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 201 KILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444444444444444455555555556555555444333
No 408
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.74 E-value=4e+02 Score=22.66 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhH------HHHHHHHHhHh---hhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHDLKEQES------LLMELRNMIFL---EKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea------~v~ELe~~L~~---k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
..+..|+...+.|...-..|+.++-|+..-.+--. .|..+=....+ ...=+..|...++.++.+-+++..+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~ 85 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888877765433222 11111111111 1122334555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039797 170 VVLYLKVLDQLQQWKSESGLLK 191 (437)
Q Consensus 170 v~e~~~v~~ELe~ar~ki~~Lq 191 (437)
+... .+++..++.+++.|+
T Consensus 86 ~~~l---~~~~~elk~~l~~~~ 104 (105)
T cd00632 86 EEDL---QEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHH---HHHHHHHHHHHHHHh
Confidence 4433 344555555555554
No 409
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.71 E-value=67 Score=26.03 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
.||+-||+.|.+|++|=..|+.|---++.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999887655444
No 410
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.64 E-value=3.5e+02 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 166 LENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 166 L~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
|++++.....+.+||-.+|+-+-.++.+++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLq 35 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQ 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666655555555555443
No 411
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=26.36 E-value=7.3e+02 Score=25.55 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 106 FQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 106 ~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
.++.+||.|=..-++=--..|.|.+|. |..++-..+.|.-+.+|||
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~q----------------v~~in~qlErLRL~krrlQ 206 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQ----------------VRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHh
Confidence 456677766544444333344443332 3445555566666666665
No 412
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.04 E-value=9.4e+02 Score=26.73 Aligned_cols=143 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHhhHH--HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 104 LRFQIEELQKRELETKMQFARYHDLKEQESL--LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 104 Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~--v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
|-+-...|+..+..||.-|+-|-..-=+--+ +..|||.--.|...++-|+ ++..+-||+-=|+|-+-..++-+.++
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLR--re~V~lentlEQEqEalvN~LwKrmd 211 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLR--REAVQLENTLEQEQEALVNSLWKRMD 211 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH--------------------HHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHH
Q 039797 182 QWKSESGLLKRKVKKL--------------------VRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLEN 241 (437)
Q Consensus 182 ~ar~ki~~Lqrk~~~~--------------------a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~ 241 (437)
....+-+-||+|+... +.--+.+++.|+-.|..+.....-+-+-..+-=...- .
T Consensus 212 kLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~------~ 285 (552)
T KOG2129|consen 212 KLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYR------A 285 (552)
T ss_pred HHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Q ss_pred HHHHHHHHhHHHH
Q 039797 242 ELKELHSVIDQLQ 254 (437)
Q Consensus 242 Ev~ELrr~nk~LQ 254 (437)
|-+.+|-.|.+||
T Consensus 286 Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 286 EEVDHREENERLQ 298 (552)
T ss_pred HHhhHHHHHHHHH
No 413
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=3.4e+02 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
+++.|...+.-++++-.-|+.++..+.....++..+..-++.++.
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~ 51 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKG 51 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555556666666666666666555555544
No 414
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=25.95 E-value=2.7e+02 Score=28.74 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=26.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
.||+++..||..|..|+-.|-+|-.+-..|...+
T Consensus 224 rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 224 RKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6788899999999999988888877766555444
No 415
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.93 E-value=9.4e+02 Score=26.67 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHhhhhhh-h--hHH----HHh--hHHhhcc
Q 039797 283 TMENYRQLLNECEQLQKD----RAAEAKELIYLRWANACLRHELMRNQAQQ-E--QNQ----EKN--RIVEFVG 343 (437)
Q Consensus 283 ~~e~~~~L~kqvEqLq~d----R~seVEELVYLRWvNACLR~ELrn~~~~~-~--~~q----ek~--l~Le~a~ 343 (437)
.++...+.-++|+.+..+ |++=.+++-.|.=.|.=++.|-.|.-..- | +.| |-+ .+||.+|
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sG 218 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG 218 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhC
Confidence 457777888888888755 66677888888888999988876655421 1 212 333 6777775
No 416
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.91 E-value=3.1e+02 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
..+...|+++++||+.+++.+...
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544443
No 417
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=25.79 E-value=9.3e+02 Score=26.61 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhh----hh--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039797 240 ENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEG----TT--MENYRQLLNECEQLQKDRAAEAKELIYLRW 313 (437)
Q Consensus 240 E~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~----v~--~e~~~~L~kqvEqLq~dR~seVEELVYLRW 313 (437)
+.-.....|.|.+|---|.||..+|.+-=.+++.+....-.. .+ +..| ++|-|-. .. --|+-||+-
T Consensus 455 rqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkday-----ELEVLLR--VK-EsEiQYLKq 526 (593)
T KOG4807|consen 455 RQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAY-----ELEVLLR--VK-ESEIQYLKQ 526 (593)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchh-----hHHHHHH--hh-HHHHHHHHH
Confidence 334445556777888888888888854333344432211000 01 1122 2222211 11 137889999
Q ss_pred HHHHHHHHHHhhh
Q 039797 314 ANACLRHELMRNQ 326 (437)
Q Consensus 314 vNACLR~ELrn~~ 326 (437)
--.||+.||.--+
T Consensus 527 EissLkDELQtal 539 (593)
T KOG4807|consen 527 EISSLKDELQTAL 539 (593)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999996433
No 418
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=25.70 E-value=40 Score=30.08 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q 039797 309 IYLRWANACLR 319 (437)
Q Consensus 309 VYLRWvNACLR 319 (437)
||--||.||=+
T Consensus 70 VYSdWiDaCe~ 80 (109)
T KOG3214|consen 70 VYSDWIDACEA 80 (109)
T ss_pred HHHHHHHHHHH
Confidence 89999999954
No 419
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.69 E-value=3.8e+02 Score=22.06 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHhhhHHhHHH
Q 039797 166 LENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDII-REQNLKIESADAEL 222 (437)
Q Consensus 166 L~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~l-kqqv~~l~~~E~E~ 222 (437)
|...+.....-..+++.+...+......++..+...+.++... ..-...|+..+..+
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444555555554332 22333344444433
No 420
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.60 E-value=3.4e+02 Score=25.97 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRK 200 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q 200 (437)
+.+..-+++++++...|++++.++ ...+-++.+.+.-++++..++..+
T Consensus 15 ~~~~~~~~~~~~ei~~l~~e~~el---kd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 15 DIAEEIVETANPEITALKAEIEEL---KDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666655555555543 344555555555566655555433
No 421
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.54 E-value=8.2e+02 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQE 132 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQe 132 (437)
...|.+.|..-.++||+.-......+-+...++.+-
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C 37 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKC 37 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777766666666655544443
No 422
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=4.2e+02 Score=26.94 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.5
Q ss_pred hhhhcchhHHHHHhHHHHHHHh
Q 039797 15 VLLKAGVPLAISVAGFICAKMM 36 (437)
Q Consensus 15 ~~lk~g~~lalS~ag~i~ar~~ 36 (437)
+|+.++++++..++|++++.-.
T Consensus 18 v~~~~s~~~~~~l~~~~~a~~~ 39 (247)
T COG3879 18 VFWMLSISLAMLLAGVMLAAVF 39 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888888888887654
No 423
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=25.48 E-value=39 Score=31.34 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.4
Q ss_pred chhhhhcchhHHHHHhHHHHHHHhcccC
Q 039797 13 KPVLLKAGVPLAISVAGFICAKMMARKD 40 (437)
Q Consensus 13 kp~~lk~g~~lalS~ag~i~ar~~~r~~ 40 (437)
-|+||-+|+-|++|.+++++-|+..|+.
T Consensus 103 ~~~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 103 SPGIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeeeccc
Confidence 4899999999999999998888765544
No 424
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.44 E-value=98 Score=28.08 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
-+||+-||..|.+|.+|-..||.|--
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999987643
No 425
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=25.21 E-value=5e+02 Score=23.27 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=21.6
Q ss_pred hhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHH
Q 039797 125 YHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESEN 163 (437)
Q Consensus 125 y~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn 163 (437)
|+.|.|-.+.+|.|+..+ .++..+...+..+.++-
T Consensus 2 ~FTl~EA~~lLP~l~~~~----~~~~~~~~~~~~~~~~l 36 (120)
T PF09969_consen 2 YFTLEEANALLPLLRPIL----EEIRELKAELEELEERL 36 (120)
T ss_pred ccCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 677888888888888776 33344444444444433
No 426
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.00 E-value=4.2e+02 Score=22.33 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
-|..++..|++....|+.+|.-|..++
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666777776666655
No 427
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.98 E-value=4.9e+02 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 160 ESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 160 EsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
+.|-..-.+.+..+..++.++..++..+..|+..+.
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555444
No 428
>PF14282 FlxA: FlxA-like protein
Probab=24.88 E-value=4e+02 Score=23.10 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 229 LEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 229 ~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
.+.|.+.++.|...+..|..-..+||.++.+-...-...
T Consensus 46 ~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~~~ 84 (106)
T PF14282_consen 46 AEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQSS 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345556677888888888888889998888776665444
No 429
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.85 E-value=5e+02 Score=24.90 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRL 166 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL 166 (437)
..++..|..++..|+.|+..|
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 430
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.79 E-value=4e+02 Score=27.83 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=15.1
Q ss_pred chhhhhcchhHHHHHhHHHH
Q 039797 13 KPVLLKAGVPLAISVAGFIC 32 (437)
Q Consensus 13 kp~~lk~g~~lalS~ag~i~ 32 (437)
.+++=++|++=+++|+|+..
T Consensus 35 ~~~~~k~~~~~~~~~~~~~~ 54 (294)
T KOG4571|consen 35 PCDLAKAATLEWLAVDGLSS 54 (294)
T ss_pred CCCcccccccccccccCCCC
Confidence 45666888888888888764
No 431
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=24.78 E-value=5.7e+02 Score=28.79 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKEL 204 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q 204 (437)
|+..|.+--+-.++--+|+-+++. +....|..|+.|...|.-|++.-.++..+.
T Consensus 29 ef~rl~k~fed~~ek~~r~~ae~~---~~~~~L~Ka~tk~~~ldvklkha~~~vda~ 82 (604)
T KOG3564|consen 29 EFIRLRKDFEDFEEKWKRTDAELG---KYKDLLAKAETKRSALDVKLKHARNQVDAE 82 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 333444444555555566655444 446777888888888887777655544443
No 432
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.78 E-value=6.9e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKVLDQLQQ 182 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ 182 (437)
++|+..|.-++++...+...++....-...++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~ 59 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLER 59 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888877777666666655555443
No 433
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=24.67 E-value=1.5e+03 Score=28.47 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVES 161 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 161 (437)
+.-+-....++..++.+++...-++.+.=.--..+.|+..+..-.....+.+..+++.++-
T Consensus 787 ~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k 847 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQK 847 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777776666653333334444444444444444444444444433
No 434
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=24.66 E-value=6.4e+02 Score=25.41 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=11.4
Q ss_pred chhHHHHHhHHHHHHHh
Q 039797 20 GVPLAISVAGFICAKMM 36 (437)
Q Consensus 20 g~~lalS~ag~i~ar~~ 36 (437)
.+-|+|-.-|||++|--
T Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (310)
T PRK10559 12 AITLVLVILAFIAIFRA 28 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666778888764
No 435
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.61 E-value=4.5e+02 Score=22.79 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..+..++...+.+++.|..+++..
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455555555566665555544
No 436
>PLN02320 seryl-tRNA synthetase
Probab=24.61 E-value=3.8e+02 Score=29.76 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..+++.|+++.+.+..++..
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666654
No 437
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.46 E-value=3e+02 Score=23.65 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 166 LENLVVLYLKVLDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 166 L~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
|+..-+++..+..+|+.+..+++.|+++.+.+-
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666778888889999999999988876
No 438
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.31 E-value=4.6e+02 Score=27.45 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHH
Q 039797 101 ILNLRFQIEE----LQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVE 160 (437)
Q Consensus 101 I~~Lr~lVee----LqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLE 160 (437)
|-.++..+.+ |.+||+.|=.||...+. |++..-..++- +..+++.+......|-
T Consensus 184 ~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~----EAmeiL~aRqk--kAeeLkrltd~A~~Ms 241 (302)
T PF07139_consen 184 IKKIKQTFAELQSCLMDREVALLAEMDKVKA----EAMEILDARQK--KAEELKRLTDRASQMS 241 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHhhcC
Confidence 4445544444 45788888888888876 66655555543 3444555554444443
No 439
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.20 E-value=4.7e+02 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
+-++-.+..+--+|..|++||+.+.
T Consensus 43 nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 43 NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554
No 440
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.16 E-value=1.3e+02 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=18.8
Q ss_pred hhHHHHhhHHH-HHHHHHHHHHHHHh
Q 039797 226 CDVLEEKSNAI-QKLENELKELHSVI 250 (437)
Q Consensus 226 ~~e~E~Kl~~l-~~LE~Ev~ELrr~n 250 (437)
.++++.++.+| .+||.|+.|||+.-
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY 35 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRY 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45777777765 57899999998764
No 441
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.07 E-value=5.3e+02 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039797 179 QLQQWKSESGLLKRKVKKLVR 199 (437)
Q Consensus 179 ELe~ar~ki~~Lqrk~~~~a~ 199 (437)
++..+..+.+.|+++++....
T Consensus 88 e~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 88 ELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554433
No 442
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=24.03 E-value=75 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.3
Q ss_pred chhHHHHHhHHHHHHHhccc
Q 039797 20 GVPLAISVAGFICAKMMARK 39 (437)
Q Consensus 20 g~~lalS~ag~i~ar~~~r~ 39 (437)
|.|.++.++++.++++..||
T Consensus 7 g~~~~~~l~~l~l~~l~rRR 26 (27)
T TIGR03382 7 GAGGLLALALLALAALLRRR 26 (27)
T ss_pred chHHHHHHHHHHHHHHHhcc
Confidence 67888888888888887665
No 443
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.81 E-value=5.6e+02 Score=27.30 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039797 102 LNLRFQIEELQKRELETKMQ 121 (437)
Q Consensus 102 ~~Lr~lVeeLqERE~~LE~e 121 (437)
..|+..+..|++.-..+..+
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~ 349 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEE 349 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 444
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.74 E-value=7.2e+02 Score=24.61 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhh
Q 039797 160 ESENKRLENLVVLYLKVLDQLQQW--------------KSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRN 225 (437)
Q Consensus 160 EsEn~rL~~~v~e~~~v~~ELe~a--------------r~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~ 225 (437)
+.=+.-||..|....-..+.+... ++.+..|+.++.. .++.+..+.++.-..+..-++.-.+
T Consensus 42 ~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~----~~qk~~tl~e~~en~K~~~e~tEer 117 (203)
T KOG3433|consen 42 QTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLAT----GSQKKATLGESIENRKAGREETEER 117 (203)
T ss_pred hHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHH----hhhhHhHHHHHHHHHHhhhhhhHHH
Confidence 445666777777766666655433 3344444443332 2333344444433333333333334
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHh
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQ 298 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq 298 (437)
-+++.+++.++++ ...-||--..-+|+=+-....++..++ -++.++.++-+.+|.-|+
T Consensus 118 ~~el~kklnslkk---~~e~lr~el~k~~e~dpqv~~k~~~~~------------K~~~eaanrwtDnI~il~ 175 (203)
T KOG3433|consen 118 TDELTKKLNSLKK---ILESLRWELAKIQETDPQVFEKKVHLE------------KTMAEAANRWTDNIFILI 175 (203)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHHhhhhhhHHHHH
Confidence 4566677666665 333344444444433333333332222 122344455666666554
No 445
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=23.66 E-value=1.4e+02 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 144 LEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 144 ~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.+..+++.|+..+..++.+|..|.++|.+.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778889999999999999999888765
No 446
>PLN02939 transferase, transferring glycosyl groups
Probab=23.58 E-value=1.4e+03 Score=27.79 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 039797 109 EELQKRELETKMQFAR 124 (437)
Q Consensus 109 eeLqERE~~LE~eLLE 124 (437)
+.||..=.-|++.|-|
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 166 EALQGKINILEMRLSE 181 (977)
T ss_pred HHHHhhHHHHHHHhhh
Confidence 3444444556666666
No 447
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=1e+03 Score=26.36 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=46.3
Q ss_pred cCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 92 QDKLHYELEILN-LRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 92 ~~~~~~~~EI~~-Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
.+..+|+.++.. |.----.+++-+..++.++-....|-..-.....|+|+..-.....++|+--+--++-|..-|.
T Consensus 92 ~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk 168 (542)
T KOG0993|consen 92 SPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELK 168 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Confidence 355667777766 6555556666666666666555555444445567788776666666666665555555544443
No 448
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.56 E-value=8.9e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQW 183 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~a 183 (437)
+..+.+.|+.|-+.|++-...|..-.+|+...
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~l 33 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKL 33 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887777777777766543
No 449
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.54 E-value=8.3e+02 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhhhhhHhhH-----HHHHHHHHhHhh
Q 039797 101 ILNLRFQIEELQKRELETK---MQFARYHDLKEQES-----LLMELRNMIFLE 145 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE---~eLLEy~~LKEQea-----~v~ELe~~L~~k 145 (437)
|+.|-+|--=|.+|=..|. ...+-+..+..-=+ ....++++|..-
T Consensus 357 ldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V 409 (507)
T PF05600_consen 357 LDELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAV 409 (507)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHH
Confidence 6666666666677766666 55554444433222 344566665433
No 450
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.48 E-value=3.2e+02 Score=23.21 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK 175 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~ 175 (437)
+..|+..|..-..+|+.-......|..||+-|+.=+..+..
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666667777777777766655543
No 451
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.47 E-value=62 Score=30.45 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=25.3
Q ss_pred hcccchhhhhcchhHHHHHhHHHHHHHhcccC
Q 039797 9 QAIIKPVLLKAGVPLAISVAGFICAKMMARKD 40 (437)
Q Consensus 9 e~~~kp~~lk~g~~lalS~ag~i~ar~~~r~~ 40 (437)
.-||+=|.+.+|+|.++.||-|+.+.++..+.
T Consensus 59 ~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~ 90 (153)
T PF11947_consen 59 NRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQ 90 (153)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHhcc
Confidence 34667788899999999999998887764434
No 452
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=23.21 E-value=7e+02 Score=24.25 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---h-hHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 039797 173 YLKVLDQLQQWKSESGLLKRKVKKLVR---K-TKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHS 248 (437)
Q Consensus 173 ~~~v~~ELe~ar~ki~~Lqrk~~~~a~---q-~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr 248 (437)
-..+..+|..|.++|..|.+++....+ . .++...++.+|+.--.. -.-...++..++..|..||.|-.-|.+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e----~~~~~~~~~~klekLe~LE~E~~rLt~ 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRE----RQQDQSELQAKLEKLEKLEKEYLRLTA 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----hccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999886643 2 24455666666443322 123445788888899999999877776
Q ss_pred HhHHHHHHHHHHHHhHH
Q 039797 249 VIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 249 ~nk~LQ~EK~eL~~kL~ 265 (437)
+-.--+.-..+|-.||.
T Consensus 135 ~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 135 TQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555555555553
No 453
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.14 E-value=9.8e+02 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETK 119 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE 119 (437)
..++|..|+..++.|+..-.+++
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666555444333
No 454
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.10 E-value=7.6e+02 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk 193 (437)
+......+...+.+-.|.+..+........+++.++......+.+
T Consensus 116 l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~ 160 (331)
T PRK03598 116 VKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT 160 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444555555555565555555555566666665555544443
No 455
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.72 E-value=4e+02 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039797 181 QQWKSESGLLKRKVKKLVRKTKELSDIIREQNL 213 (437)
Q Consensus 181 e~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~ 213 (437)
...+.++..|-..++..+...+..+..++..+.
T Consensus 41 ~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 41 SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666666666666543
No 456
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=22.64 E-value=55 Score=27.43 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 039797 309 IYLRWANACLR 319 (437)
Q Consensus 309 VYLRWvNACLR 319 (437)
||-.||.||..
T Consensus 69 VY~~wiD~~~~ 79 (81)
T PF05129_consen 69 VYSEWIDACEE 79 (81)
T ss_dssp HHHHHHHHHH-
T ss_pred hhHHHHHHHHh
Confidence 78888888863
No 457
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.44 E-value=8.6e+02 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=16.3
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVS 157 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~ 157 (437)
|.+....|.+|+.+|.....++..-....+
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555555544444333
No 458
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=22.27 E-value=1.9e+02 Score=30.45 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 039797 284 MENYRQLLNECEQLQKDRAAE 304 (437)
Q Consensus 284 ~e~~~~L~kqvEqLq~dR~se 304 (437)
++....|.+|||+|-...+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (337)
T PRK14872 182 KDQLRTLARQVERLPTSYILE 202 (337)
T ss_pred ccchhhhhhhccccccccccc
Confidence 456678999999986665554
No 459
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.25 E-value=1.1e+03 Score=26.28 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=13.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHH
Q 039797 228 VLEEKSNAIQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 228 e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ 254 (437)
.+++=++.--++|+..-+-+|.|.+-|
T Consensus 336 aLQ~wLq~T~E~E~q~~~kkrqnaekq 362 (575)
T KOG4403|consen 336 ALQKWLQLTHEVEVQYYNKKRQNAEKQ 362 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444555555555555554444
No 460
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.12 E-value=7.3e+02 Score=24.77 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHhHhhhhHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVS 157 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~ 157 (437)
.+|+++|..-..||..|+-.|+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4555554443334433333333
No 461
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.92 E-value=3e+02 Score=21.44 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRL 166 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL 166 (437)
++.+..++..|+.+..+|
T Consensus 33 i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 33 IEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 462
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.86 E-value=8.9e+02 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=13.4
Q ss_pred chhhhhcchhHHHHHhHHHHHHHhc
Q 039797 13 KPVLLKAGVPLAISVAGFICAKMMA 37 (437)
Q Consensus 13 kp~~lk~g~~lalS~ag~i~ar~~~ 37 (437)
.|+|+-|.+|..++ .+|.++++
T Consensus 82 ~rl~~~VllPtlla---~~Yy~~iA 103 (434)
T PRK15178 82 RRLFLYIALPLLVI---MLMSWILT 103 (434)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHh
Confidence 67777777776543 45555553
No 463
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.73 E-value=1.5e+03 Score=27.72 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=31.5
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
..++++++..+++|+..+.|.+-...++-.+.-++..+++.+..
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888777777777777777777777776654
No 464
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.58 E-value=3.9e+02 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=30.7
Q ss_pred HhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039797 130 EQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLD 178 (437)
Q Consensus 130 EQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ 178 (437)
|.+-.+.++++.+..|..+++.+...+..|+.+..-|+++|.+-..+.+
T Consensus 123 e~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 123 ELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666777777777777776666666655544443
No 465
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.54 E-value=8e+02 Score=24.31 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
..++.++..-..+++.....+...+.+-.|.+...........+++.++.....++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~ 152 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELE 152 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666666666666666666666666666666666555554433
No 466
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=21.28 E-value=3.7e+02 Score=20.38 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
+..|..-|..|+...--|.+-+..|....+=+...+..+...+.+|+.
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888888888888888888788888777777776654
No 467
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.26 E-value=3.2e+02 Score=22.42 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
.+..|..|=.-||.....++.|.+.|..|.+.|..++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777777777776653
No 468
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.24 E-value=1.1e+03 Score=25.77 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+|..+|+.-..-++.+...|-.+++...+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~ 302 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRA 302 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777754443
No 469
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.24 E-value=6.1e+02 Score=22.86 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHH
Q 039797 102 LNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVES 161 (437)
Q Consensus 102 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 161 (437)
+.+-..|+.=+-|..-+...|--- .+..++....|+..+..+++|++.|+....+|+.
T Consensus 51 ~~~A~~VE~eKlkAIG~RN~l~s~--~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 51 DELAKRVENEKLKAIGARNLLKSE--AKQREAQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444344444444433332 3555666667777777777777777666666643
No 470
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.24 E-value=6.1e+02 Score=27.11 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=7.0
Q ss_pred HHHHHHHHhh
Q 039797 316 ACLRHELMRN 325 (437)
Q Consensus 316 ACLR~ELrn~ 325 (437)
.|-|+|...+
T Consensus 258 ~~fR~Eag~~ 267 (425)
T PRK05431 258 PCFRSEAGSA 267 (425)
T ss_pred CEecCCCCcC
Confidence 5888887543
No 471
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.81 E-value=2.2e+02 Score=28.06 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
|...|+.+++|..+|..+..++..+...+..+..-|..|..
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555566666666555555555555555555555554443
No 472
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.61 E-value=1.3e+02 Score=24.51 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLE 167 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~ 167 (437)
||+.|+.+|.-|++.|..|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444
No 473
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=5.2e+02 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVS 157 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~ 157 (437)
++.+.+||.+++....-|+.|+.-+.
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~la 32 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALA 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444433
No 474
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.37 E-value=3.6e+02 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 137 ELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 137 ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
+||+.+..-.+.|..++..++.+..+.+++..
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444333333333
No 475
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=20.32 E-value=1.2e+03 Score=25.79 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQK 113 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqE 113 (437)
.-+.|..+|.-+..-++
T Consensus 79 i~~qlr~~rtel~~a~~ 95 (499)
T COG4372 79 IRPQLRALRTELGTAQG 95 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666665555444
No 476
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.06 E-value=9.7e+02 Score=24.72 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
.++..|..|.-+-.-|+-|+.+...+-.||.+++.+-.-|+.+++
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~ 57 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQ 57 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777777666666444
No 477
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.06 E-value=72 Score=25.82 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHH
Q 039797 233 SNAIQKLENELKELHSVIDQLQEQ 256 (437)
Q Consensus 233 l~~l~~LE~Ev~ELrr~nk~LQ~E 256 (437)
.+.|+.|=.||.-|++.|++|+++
T Consensus 20 ~~tL~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 20 AQTLKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccccee
Confidence 345778889999999988888875
No 478
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.01 E-value=2.2e+02 Score=32.06 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 161 SENKRLENLVVLYLKVLDQLQQWKSESGLLK 191 (437)
Q Consensus 161 sEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lq 191 (437)
-|-.+|.+...+...+++||+..|.+++.|.
T Consensus 640 ~Ems~llery~eNe~l~aelk~lreenq~lr 670 (673)
T KOG4378|consen 640 REMSRLLERYNENEMLKAELKFLREENQTLR 670 (673)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhh
Confidence 3444455445555556667777776666654
Done!