Query 039797
Match_columns 437
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 96.7 0.054 1.8E-06 61.5 18.9 24 238-261 1020-1043(1080)
2 2v71_A Nuclear distribution pr 96.7 0.39 1.3E-05 44.8 21.7 63 97-168 8-70 (189)
3 3na7_A HP0958; flagellar bioge 96.4 0.51 1.7E-05 44.7 20.9 47 121-167 6-52 (256)
4 1i84_S Smooth muscle myosin he 96.0 0.031 1E-06 63.5 11.8 24 98-121 856-879 (1184)
5 3na7_A HP0958; flagellar bioge 96.0 1.1 3.7E-05 42.5 20.9 14 289-302 154-167 (256)
6 3vkg_A Dynein heavy chain, cyt 95.5 2.9 9.9E-05 52.7 26.5 156 111-270 1908-2071(3245)
7 2dfs_A Myosin-5A; myosin-V, in 95.4 0.84 2.9E-05 51.9 19.9 71 231-306 981-1051(1080)
8 1c1g_A Tropomyosin; contractIl 94.5 2.3 7.7E-05 37.4 32.5 14 101-114 15-28 (284)
9 3vkg_A Dynein heavy chain, cyt 93.8 10 0.00035 48.0 25.5 48 109-156 1913-1964(3245)
10 3oja_B Anopheles plasmodium-re 93.8 2.1 7.1E-05 43.8 16.8 32 238-269 548-579 (597)
11 3o0z_A RHO-associated protein 92.0 7.4 0.00025 35.7 16.3 102 97-198 46-156 (168)
12 3ghg_A Fibrinogen alpha chain; 91.6 6.9 0.00024 41.7 17.2 34 282-315 173-206 (562)
13 3oja_B Anopheles plasmodium-re 90.9 4.8 0.00016 41.2 15.2 27 97-123 454-480 (597)
14 3swk_A Vimentin; cytoskeleton, 89.9 0.42 1.4E-05 39.1 5.1 64 242-312 1-83 (86)
15 2fxo_A Myosin heavy chain, car 87.8 12 0.00043 32.0 17.3 31 238-268 94-124 (129)
16 3ol1_A Vimentin; structural ge 87.0 9.8 0.00034 32.5 12.0 35 93-127 14-48 (119)
17 2jee_A YIIU; FTSZ, septum, coi 85.7 11 0.00036 31.0 10.9 59 135-193 8-77 (81)
18 3oja_A Leucine-rich immune mol 85.5 9.8 0.00033 38.2 13.0 16 110-125 364-379 (487)
19 2fxo_A Myosin heavy chain, car 85.1 18 0.0006 31.1 18.5 24 237-260 86-109 (129)
20 2no2_A HIP-I, huntingtin-inter 85.0 12 0.0004 31.8 11.3 56 126-181 47-102 (107)
21 3oja_A Leucine-rich immune mol 84.3 36 0.0012 34.1 18.7 33 237-269 438-470 (487)
22 3o0z_A RHO-associated protein 83.7 26 0.00091 32.1 18.0 108 152-269 18-132 (168)
23 3mq9_A Bone marrow stromal ant 82.9 24 0.00082 35.2 14.6 87 163-256 375-465 (471)
24 3hnw_A Uncharacterized protein 81.8 26 0.00087 30.8 12.6 94 151-265 36-134 (138)
25 2v71_A Nuclear distribution pr 81.8 33 0.0011 31.9 20.3 37 236-272 104-140 (189)
26 3u1c_A Tropomyosin alpha-1 cha 81.7 21 0.00073 29.6 14.5 64 134-197 31-98 (101)
27 3swk_A Vimentin; cytoskeleton, 80.1 17 0.00059 29.5 10.1 33 237-269 45-77 (86)
28 1ik9_A DNA repair protein XRCC 79.9 28 0.00095 32.7 12.9 55 152-212 144-198 (213)
29 2b9c_A Striated-muscle alpha t 79.4 26 0.00088 31.2 11.9 68 202-269 51-122 (147)
30 3i00_A HIP-I, huntingtin-inter 77.4 13 0.00045 32.1 9.1 71 94-173 10-80 (120)
31 3ol1_A Vimentin; structural ge 76.6 34 0.0012 29.1 15.1 27 147-173 20-46 (119)
32 1deq_A Fibrinogen (alpha chain 74.4 60 0.002 33.4 14.3 29 283-311 177-205 (390)
33 1gd2_E Transcription factor PA 73.4 6.6 0.00023 31.2 5.7 37 231-267 26-62 (70)
34 2oqq_A Transcription factor HY 72.4 11 0.00038 27.4 6.1 37 133-169 3-39 (42)
35 1deq_A Fibrinogen (alpha chain 70.0 75 0.0026 32.7 13.8 55 168-222 102-157 (390)
36 1p9i_A Cortexillin I/GCN4 hybr 67.7 4.1 0.00014 27.4 2.8 27 150-176 2-28 (31)
37 3s9g_A Protein hexim1; cyclin 67.3 38 0.0013 28.8 9.3 24 235-258 66-89 (104)
38 1go4_E MAD1 (mitotic arrest de 66.5 34 0.0011 29.0 8.9 29 145-173 10-38 (100)
39 3a7p_A Autophagy protein 16; c 66.5 76 0.0026 28.7 11.7 25 241-265 110-134 (152)
40 3hnw_A Uncharacterized protein 65.1 55 0.0019 28.7 10.4 17 179-195 111-127 (138)
41 3a7p_A Autophagy protein 16; c 64.5 57 0.0019 29.5 10.5 65 97-167 66-130 (152)
42 1go4_E MAD1 (mitotic arrest de 63.4 22 0.00074 30.1 7.1 64 236-299 14-89 (100)
43 3s4r_A Vimentin; alpha-helix, 62.5 46 0.0016 27.3 8.9 75 101-186 18-92 (93)
44 1jnm_A Proto-oncogene C-JUN; B 61.9 17 0.00059 27.4 5.8 36 230-265 18-53 (62)
45 2dgc_A Protein (GCN4); basic d 61.5 13 0.00045 28.6 5.1 35 230-264 26-60 (63)
46 3a7o_A Autophagy protein 16; c 60.8 19 0.00065 29.0 5.9 44 129-172 28-71 (75)
47 2v4h_A NF-kappa-B essential mo 60.4 83 0.0028 27.1 12.0 14 203-216 62-75 (110)
48 3qh9_A Liprin-beta-2; coiled-c 60.1 39 0.0013 27.7 7.8 55 96-156 23-77 (81)
49 2l5g_B Putative uncharacterize 59.6 23 0.00078 25.8 5.6 31 168-198 6-36 (42)
50 1ic2_A Tropomyosin alpha chain 59.0 65 0.0022 25.4 9.3 37 235-271 35-71 (81)
51 2wt7_B Transcription factor MA 58.6 75 0.0026 26.3 9.5 68 199-270 17-84 (90)
52 3q8t_A Beclin-1; autophagy, AT 57.7 79 0.0027 26.0 13.2 27 99-125 4-30 (96)
53 1m1j_B Fibrinogen beta chain; 57.4 1.9E+02 0.0064 30.3 15.1 18 98-115 99-116 (464)
54 2efr_A General control protein 55.9 1.2E+02 0.004 27.4 17.9 60 210-269 56-119 (155)
55 3u59_A Tropomyosin beta chain; 55.4 85 0.0029 25.7 14.3 63 135-197 32-98 (101)
56 2zuo_A MVP, major vault protei 54.3 2.8E+02 0.0095 31.3 19.0 52 110-168 667-718 (861)
57 1dh3_A Transcription factor CR 53.4 19 0.00065 27.0 4.6 29 146-174 21-49 (55)
58 3tnu_A Keratin, type I cytoske 52.3 1.1E+02 0.0038 26.1 11.6 66 97-172 36-102 (131)
59 1t2k_D Cyclic-AMP-dependent tr 52.2 34 0.0012 25.7 5.9 35 231-265 19-53 (61)
60 2wt7_A Proto-oncogene protein 51.9 40 0.0014 25.6 6.3 27 146-172 22-48 (63)
61 4h22_A Leucine-rich repeat fli 51.3 63 0.0021 27.6 8.0 74 136-212 19-92 (103)
62 3i00_A HIP-I, huntingtin-inter 50.6 50 0.0017 28.5 7.5 21 97-117 20-40 (120)
63 2wt7_A Proto-oncogene protein 49.4 37 0.0013 25.8 5.8 35 230-264 19-53 (63)
64 4h22_A Leucine-rich repeat fli 49.4 38 0.0013 28.9 6.3 49 128-176 39-87 (103)
65 2i1j_A Moesin; FERM, coiled-co 49.1 35 0.0012 36.1 7.5 26 224-249 423-448 (575)
66 3nmd_A CGMP dependent protein 49.0 58 0.002 26.1 7.0 29 128-156 35-63 (72)
67 1pfi_A Major coat protein of P 48.9 8.3 0.00029 28.3 1.9 19 18-36 26-44 (46)
68 1t2k_D Cyclic-AMP-dependent tr 48.7 40 0.0014 25.3 5.8 28 146-173 21-48 (61)
69 1deb_A APC protein, adenomatou 48.3 87 0.003 23.7 7.8 27 228-254 25-51 (54)
70 3bas_A Myosin heavy chain, str 48.3 1.1E+02 0.0036 24.7 10.3 50 220-269 14-63 (89)
71 1eq1_A Apolp-III, apolipophori 47.5 19 0.00065 32.4 4.4 66 235-300 79-158 (166)
72 1ci6_A Transcription factor AT 47.4 51 0.0017 25.1 6.3 25 147-171 23-47 (63)
73 1jnm_A Proto-oncogene C-JUN; B 47.3 28 0.00096 26.3 4.8 28 146-173 21-48 (62)
74 2q6q_A Spindle POLE BODY compo 47.2 1.1E+02 0.0037 24.5 8.7 27 136-162 6-32 (74)
75 1dh3_A Transcription factor CR 46.5 35 0.0012 25.5 5.2 33 231-263 19-51 (55)
76 1m1j_A Fibrinogen alpha subuni 45.5 3E+02 0.01 29.1 15.3 20 282-301 174-193 (491)
77 2k48_A Nucleoprotein; viral pr 44.5 1.3E+02 0.0045 25.8 8.9 53 200-255 46-103 (107)
78 2yy0_A C-MYC-binding protein; 44.4 33 0.0011 25.6 4.7 28 238-265 23-50 (53)
79 2v4h_A NF-kappa-B essential mo 44.3 1.5E+02 0.0053 25.4 11.3 20 142-161 40-59 (110)
80 1ci6_A Transcription factor AT 44.3 49 0.0017 25.2 5.8 32 231-262 20-51 (63)
81 2i1j_A Moesin; FERM, coiled-co 44.0 20 0.00069 37.9 4.7 36 237-272 387-422 (575)
82 3mq9_A Bone marrow stromal ant 43.8 2.5E+02 0.0086 27.8 14.5 30 239-268 434-463 (471)
83 2dgc_A Protein (GCN4); basic d 43.6 29 0.00099 26.7 4.4 29 146-174 29-57 (63)
84 4emc_A Monopolin complex subun 43.3 55 0.0019 30.6 7.0 23 149-171 15-37 (190)
85 1kd8_B GABH BLL, GCN4 acid bas 42.8 40 0.0014 23.8 4.5 30 235-264 2-31 (36)
86 2akf_A Coronin-1A; coiled coil 42.7 30 0.001 23.6 3.7 25 96-120 3-27 (32)
87 2v66_B Nuclear distribution pr 42.4 1.6E+02 0.0056 25.2 14.2 31 241-271 56-86 (111)
88 1f5n_A Interferon-induced guan 42.3 3.4E+02 0.012 28.8 14.6 9 50-58 299-307 (592)
89 3nmd_A CGMP dependent protein 41.6 49 0.0017 26.6 5.5 28 135-162 21-48 (72)
90 3efg_A Protein SLYX homolog; x 41.5 83 0.0028 25.1 6.9 36 132-167 13-48 (78)
91 1hjb_A Ccaat/enhancer binding 41.4 63 0.0022 26.5 6.3 38 148-188 37-74 (87)
92 3tnu_B Keratin, type II cytosk 40.8 1.7E+02 0.0057 24.8 12.5 66 97-172 34-100 (129)
93 4gkw_A Spindle assembly abnorm 40.7 2E+02 0.0069 25.8 19.7 24 174-197 56-79 (167)
94 1kd8_A GABH AIV, GCN4 acid bas 39.8 34 0.0012 24.2 3.7 29 236-264 3-31 (36)
95 3ghg_A Fibrinogen alpha chain; 39.4 1.9E+02 0.0065 31.0 11.0 51 172-222 103-154 (562)
96 3qh9_A Liprin-beta-2; coiled-c 39.3 1.4E+02 0.0047 24.5 7.9 16 147-162 26-41 (81)
97 1x79_B RAB GTPase binding effe 38.8 1.9E+02 0.0064 24.9 12.6 25 156-180 8-32 (112)
98 3cl3_D NF-kappa-B essential mo 38.3 1.3E+02 0.0043 26.7 8.1 82 105-186 5-94 (130)
99 1ik9_A DNA repair protein XRCC 37.3 2.6E+02 0.0089 26.0 11.0 27 177-203 181-207 (213)
100 3bas_A Myosin heavy chain, str 36.8 1.6E+02 0.0056 23.6 10.6 33 137-169 25-57 (89)
101 1m1j_A Fibrinogen alpha subuni 36.4 4.1E+02 0.014 28.1 13.0 43 181-223 114-156 (491)
102 1x8y_A Lamin A/C; structural p 36.3 1.6E+02 0.0056 23.5 9.0 26 147-172 28-53 (86)
103 1gd2_E Transcription factor PA 36.1 38 0.0013 26.8 4.0 13 150-162 53-65 (70)
104 3trt_A Vimentin; cytoskeleton, 35.4 1.5E+02 0.0051 22.7 10.1 25 235-259 50-74 (77)
105 3tnu_B Keratin, type II cytosk 35.3 2E+02 0.007 24.3 13.4 26 145-170 34-59 (129)
106 1ic2_A Tropomyosin alpha chain 35.1 79 0.0027 24.9 5.9 38 137-174 31-68 (81)
107 2j5u_A MREC protein; bacterial 34.1 26 0.00089 33.3 3.4 36 157-192 22-57 (255)
108 1x79_B RAB GTPase binding effe 34.0 2.3E+02 0.0077 24.4 11.7 35 177-211 19-53 (112)
109 1wii_A Hypothetical UPF0222 pr 33.5 18 0.00062 29.6 1.9 11 309-319 70-80 (85)
110 3m48_A General control protein 33.1 39 0.0013 23.5 3.2 25 237-261 3-27 (33)
111 2e7s_A RAB guanine nucleotide 33.0 1.5E+02 0.005 26.3 7.7 17 252-268 100-116 (135)
112 3m91_A Proteasome-associated A 32.9 1.3E+02 0.0045 22.4 6.3 16 152-167 14-29 (51)
113 2wt7_B Transcription factor MA 32.5 2E+02 0.0068 23.8 8.0 54 138-195 33-86 (90)
114 1wle_A Seryl-tRNA synthetase; 32.4 2.9E+02 0.01 28.8 11.2 23 151-173 81-103 (501)
115 3m91_A Proteasome-associated A 32.0 1.6E+02 0.0054 22.0 6.7 31 240-270 8-38 (51)
116 2lw1_A ABC transporter ATP-bin 31.7 94 0.0032 24.8 5.9 25 148-172 23-47 (89)
117 4dnd_A Syntaxin-10, SYN10; str 31.7 2.5E+02 0.0086 24.2 10.4 64 130-193 64-127 (130)
118 4fi5_A Nucleoprotein; structur 31.4 2.3E+02 0.0078 24.5 8.4 52 200-254 33-89 (113)
119 3mq7_A Bone marrow stromal ant 31.1 2.7E+02 0.0091 24.3 11.3 20 234-253 85-104 (121)
120 2oxj_A Hybrid alpha/beta pepti 30.3 71 0.0024 22.3 4.1 26 236-261 3-28 (34)
121 1jcd_A Major outer membrane li 29.8 1.8E+02 0.006 21.8 7.3 40 146-188 10-49 (52)
122 1wt6_A Myotonin-protein kinase 29.6 2.3E+02 0.0079 23.2 8.7 8 183-190 50-57 (81)
123 4etp_A Kinesin-like protein KA 29.6 1.4E+02 0.0047 30.2 7.9 8 188-195 48-55 (403)
124 2w6b_A RHO guanine nucleotide 29.5 1.1E+02 0.0037 23.5 5.4 33 151-183 14-46 (56)
125 3q8t_A Beclin-1; autophagy, AT 29.1 2.4E+02 0.0081 23.1 10.3 68 235-304 12-79 (96)
126 2e7s_A RAB guanine nucleotide 28.9 2.2E+02 0.0074 25.2 8.1 26 96-121 5-30 (135)
127 3lay_A Zinc resistance-associa 28.8 1.5E+02 0.0051 27.0 7.3 13 236-248 115-127 (175)
128 2yy0_A C-MYC-binding protein; 28.7 1E+02 0.0034 23.0 5.1 9 180-188 28-36 (53)
129 1zxa_A CGMP-dependent protein 28.6 62 0.0021 25.5 4.1 28 129-156 21-48 (67)
130 2ocy_A RAB guanine nucleotide 28.3 3.3E+02 0.011 24.5 16.9 25 96-120 17-41 (154)
131 2hy6_A General control protein 28.2 76 0.0026 22.2 3.9 27 235-261 2-28 (34)
132 1hjb_A Ccaat/enhancer binding 27.9 1.2E+02 0.0041 24.8 5.9 32 236-267 38-69 (87)
133 2f1m_A Acriflavine resistance 27.6 1.1E+02 0.0039 27.8 6.4 12 177-188 97-108 (277)
134 3qne_A Seryl-tRNA synthetase, 27.5 1.4E+02 0.0049 31.2 7.8 21 152-172 45-65 (485)
135 2ic6_A Nucleocapsid protein; h 27.5 2.5E+02 0.0085 22.8 8.9 55 198-255 14-73 (78)
136 2dq0_A Seryl-tRNA synthetase; 26.8 1.2E+02 0.0042 31.0 7.1 21 152-172 43-63 (455)
137 3q0x_A Centriole protein; cent 26.6 2.8E+02 0.0097 26.3 9.1 55 132-186 163-217 (228)
138 1gu4_A CAAT/enhancer binding p 26.1 1.4E+02 0.0047 24.0 5.8 34 148-184 37-70 (78)
139 2ocy_A RAB guanine nucleotide 25.8 3.7E+02 0.012 24.2 17.3 34 135-168 15-48 (154)
140 3m9b_A Proteasome-associated A 25.6 91 0.0031 30.2 5.5 21 149-169 56-76 (251)
141 1gu4_A CAAT/enhancer binding p 25.0 1.5E+02 0.0053 23.7 5.9 34 234-267 36-69 (78)
142 2oa5_A Hypothetical protein BQ 24.5 95 0.0032 26.7 4.8 24 243-266 10-33 (110)
143 1xaw_A Occludin; coiled-coil, 24.4 2.9E+02 0.0099 24.5 8.1 65 133-197 59-128 (140)
144 2wvr_A Geminin; DNA replicatio 24.3 2.4E+02 0.0082 26.7 7.9 40 152-191 120-159 (209)
145 2ic9_A Nucleocapsid protein; h 23.7 3.3E+02 0.011 22.9 8.9 56 197-255 13-73 (96)
146 1s94_A S-syntaxin; three helix 23.7 2.3E+02 0.008 24.7 7.5 31 182-212 78-108 (180)
147 1m1j_C Fibrinogen gamma chain; 23.1 6.1E+02 0.021 25.9 14.1 9 207-215 123-131 (409)
148 1kd8_A GABH AIV, GCN4 acid bas 23.1 1.3E+02 0.0045 21.2 4.4 29 151-179 5-33 (36)
149 2ve7_A Kinetochore protein HEC 23.1 92 0.0031 30.4 5.1 23 155-177 186-208 (315)
150 1gk7_A Vimentin; intermediate 23.1 1.5E+02 0.0053 20.8 4.9 25 147-171 13-37 (39)
151 3vmx_A Voltage-gated hydrogen 22.9 2.4E+02 0.0081 21.1 6.0 39 211-252 5-43 (48)
152 2efr_A General control protein 22.6 4.2E+02 0.014 23.7 22.2 59 203-264 77-135 (155)
153 1fzc_A Fibrin; blood coagulati 21.9 2.7E+02 0.0092 23.0 6.8 18 282-299 63-80 (87)
154 3m48_A General control protein 21.7 72 0.0025 22.1 2.9 25 152-176 5-29 (33)
155 3he4_A Synzip6; heterodimeric 21.7 1.3E+02 0.0043 22.5 4.4 46 135-180 5-50 (56)
156 1uii_A Geminin; human, DNA rep 21.4 2.9E+02 0.0098 22.7 6.9 21 150-170 56-76 (83)
157 1ses_A Seryl-tRNA synthetase; 21.2 2E+02 0.0067 29.2 7.3 16 155-170 43-58 (421)
158 1uii_A Geminin; human, DNA rep 20.8 2.8E+02 0.0096 22.7 6.7 34 148-181 47-80 (83)
159 3qne_A Seryl-tRNA synthetase, 20.8 3.2E+02 0.011 28.6 8.9 28 169-196 76-103 (485)
160 2wq1_A General control protein 20.7 1.4E+02 0.0048 20.7 4.1 25 236-260 2-26 (33)
161 1zxa_A CGMP-dependent protein 20.7 1.1E+02 0.0037 24.2 4.1 43 135-177 13-55 (67)
162 1cii_A Colicin IA; bacteriocin 20.6 7.9E+02 0.027 26.2 12.0 84 132-215 369-452 (602)
163 3fpp_A Macrolide-specific effl 20.6 2.1E+02 0.0073 26.8 7.0 28 161-188 97-124 (341)
164 3u06_A Protein claret segregat 20.5 1.7E+02 0.006 29.6 6.7 35 136-170 6-40 (412)
165 1fmh_A General control protein 20.5 1.3E+02 0.0045 20.4 3.9 26 148-173 2-27 (33)
166 2oqq_A Transcription factor HY 20.5 2.5E+02 0.0084 20.4 5.6 23 238-260 14-36 (42)
167 1nkp_B MAX protein, MYC proto- 20.4 1.3E+02 0.0046 23.4 4.7 30 236-265 49-78 (83)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.73 E-value=0.054 Score=61.47 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 238 KLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+|+..|..|+..|..|+.+..+|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.71 E-value=0.39 Score=44.82 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
...||...|.....++.+=..|+.+|-||-. -=.+||.+| -.+++.+..++.-|+..+.+|..
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe------sSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQE------GSRELEAEL---EAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999965 234555554 23444455555555555555443
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.44 E-value=0.51 Score=44.73 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 121 QFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 121 eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
+|--++.|++-++.+..|+..+..--.++..|...+..++..-..++
T Consensus 6 ~L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~ 52 (256)
T 3na7_A 6 HLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE 52 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444444444444444444333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.04 E-value=0.031 Score=63.52 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRELETKMQ 121 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE~~LE~e 121 (437)
..|+..|+..+..++++-.+++..
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555554444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.01 E-value=1.1 Score=42.46 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhhH
Q 039797 289 QLLNECEQLQKDRA 302 (437)
Q Consensus 289 ~L~kqvEqLq~dR~ 302 (437)
.+-++++.|...|.
T Consensus 154 e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 154 NIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.49 E-value=2.9 Score=52.73 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhh----hhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHH
Q 039797 111 LQKRELETKMQFARYH----DLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKV----LDQLQQ 182 (437)
Q Consensus 111 LqERE~~LE~eLLEy~----~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v----~~ELe~ 182 (437)
|.++...+..+--.|. -|.|....|.+|+.+|..+..+++.-..+.+.+=.+-..=++++.+-... .++++.
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443332 35667777777777777766666555544433322222222222211111 112222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 183 WKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLN 262 (437)
Q Consensus 183 ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~ 262 (437)
...++...+...+.+..++.= +.=+++++ ...+++.......+..+-..|++|+.++.+|+..-.++..||..|..
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~P-a~Pkr~~l---~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEP-TGPLREEV---EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHCC--------CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCC-CChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333222111100 00112222 22333333334455555556777777777777777766666666666
Q ss_pred hHHHhhhh
Q 039797 263 KLQEWHQS 270 (437)
Q Consensus 263 kL~~Ae~~ 270 (437)
.++.++.+
T Consensus 2064 e~~~~~~k 2071 (3245)
T 3vkg_A 2064 ESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.36 E-value=0.84 Score=51.89 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAEAK 306 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~seVE 306 (437)
.-...++.|+.++.+|+.....+..|+.+|-.+.+..+..+. +...-++.++..|..|++.|.......-+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~-----~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE-----QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333557788888888888888888888888777665543221 11222445566676777666644444433
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.53 E-value=2.3 Score=37.35 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKR 114 (437)
Q Consensus 101 I~~Lr~lVeeLqER 114 (437)
+..+...+..|...
T Consensus 15 ~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 15 KENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.82 E-value=10 Score=47.98 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHH----HHHHHHHhHhhhhHHHHHHHHH
Q 039797 109 EELQKRELETKMQFARYHDLKEQESL----LMELRNMIFLEKSYVELLDREV 156 (437)
Q Consensus 109 eeLqERE~~LE~eLLEy~~LKEQea~----v~ELe~~L~~k~~Ei~~L~~kI 156 (437)
.++.++-.+|+.=|-....=.+|.+. +.+++.+|..++.+.+.+-.+|
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444444332 3344555555555555444433
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.78 E-value=2.1 Score=43.84 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+||....+.+....+|+.|+..+..++..-+.
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666665555555544443
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.96 E-value=7.4 Score=35.75 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhH--------HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQES--------LLMELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea--------~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
.+.-+..|+..+..|+.-...|+-++...-..=+||. .+.+|+.++..-..|++.+.-....++.+|+.|++
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666677777666666655554 46778888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039797 169 LVVLYLKVLDQLQ-QWKSESGLLKRKVKKLV 198 (437)
Q Consensus 169 ~v~e~~~v~~ELe-~ar~ki~~Lqrk~~~~a 198 (437)
.+...-+-..-++ -.-=+++.||.+...+.
T Consensus 126 kl~~lEKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 126 MLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 8877666554444 11235667777666553
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.58 E-value=6.9 Score=41.71 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039797 282 TTMENYRQLLNECEQLQKDRAAEAKELIYLRWAN 315 (437)
Q Consensus 282 v~~e~~~~L~kqvEqLq~dR~seVEELVYLRWvN 315 (437)
|-.++|+++.|||||+-.-..--++..=||+=+.
T Consensus 173 vd~~sY~~~QKQLeQv~a~dL~p~~~~q~Lp~lK 206 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIK 206 (562)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCSCCCC------
T ss_pred cchHHHHHHHHHHHHHhhcccCCccccccchhcc
Confidence 3458999999999999776665555555665443
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.95 E-value=4.8 Score=41.18 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFA 123 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLL 123 (437)
...|+..++..|..|+++....+..+-
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888887776665443
No 14
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.90 E-value=0.42 Score=39.14 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHhhhhccccccc-chhhhhHHHH------------------HHHHHHHHHHhhhhH
Q 039797 242 ELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKI-EDEGTTMENY------------------RQLLNECEQLQKDRA 302 (437)
Q Consensus 242 Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~-E~~~v~~e~~------------------~~L~kqvEqLq~dR~ 302 (437)
|+.+||+....+..+|.-|...++.++..+.-+..- |.+...|.+. -+|-.+||.|+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~---- 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ---- 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence 457888888888888888888888777654333221 3333322211 25778888886
Q ss_pred HHHHHHHHHH
Q 039797 303 AEAKELIYLR 312 (437)
Q Consensus 303 seVEELVYLR 312 (437)
+||.|||
T Consensus 77 ---eEl~fLk 83 (86)
T 3swk_A 77 ---EEIAFLK 83 (86)
T ss_dssp ---HHHHHHT
T ss_pred ---HHHHHHh
Confidence 7888886
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.78 E-value=12 Score=32.04 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
+.|....+|-..-+.|+.+..+|...|+..+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555444
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.05 E-value=9.8 Score=32.47 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039797 93 DKLHYELEILNLRFQIEELQKRELETKMQFARYHD 127 (437)
Q Consensus 93 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 127 (437)
...-|+.+|..||..|..+.---.+|+.++--..+
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558899999999999999888888888765544
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.73 E-value=11 Score=30.98 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLK-----------VLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~-----------v~~ELe~ar~ki~~Lqrk 193 (437)
+-.||..+...-..|..|.++|+-|..+|..|..++.+... +..|...|..+++.|=.|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777666777888888888888888887776665443 444444455554444433
No 18
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.48 E-value=9.8 Score=38.20 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 039797 110 ELQKRELETKMQFARY 125 (437)
Q Consensus 110 eLqERE~~LE~eLLEy 125 (437)
.|++.+.+|+..+...
T Consensus 364 ~l~~~~~~le~~~~~~ 379 (487)
T 3oja_A 364 TLEQKKKALDEQVSNG 379 (487)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555444433
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.07 E-value=18 Score=31.12 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 039797 237 QKLENELKELHSVIDQLQEQNSEL 260 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL 260 (437)
++|+..+.+....|..|+.+|+.|
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555544
No 20
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=84.97 E-value=12 Score=31.81 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=47.7
Q ss_pred hhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 126 HDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 126 ~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
-.+++|-..+..|+++|..+..++..|+..++.++.++..+...+....+-+..|.
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999888866655555443
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.35 E-value=36 Score=34.09 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
+..=.++..|++.|.+|+.+.+++-..++.|.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 344456677777788888888888877776665
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.73 E-value=26 Score=32.11 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=62.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH---hHHHhh----
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESA---DAELLR---- 224 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~---E~E~~~---- 224 (437)
++.+...--.-..||+.+..++.+....++.. +++|+-++..+- .+-..|.++++.|++. |.....
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~---~rELq~~~~~L~----~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMSKSISQLESL---NRELQERNRILE----NSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333356666666666666555543 555555554442 2234455555555542 111111
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 225 NCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 225 ~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
...+++.| +..|..|+..+|-....++.+|+.|..++..-|.
T Consensus 91 ~~~elq~r---i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 91 MIGDLQAR---ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12244444 5678889999999999999999999999876664
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.92 E-value=24 Score=35.18 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhhH-HhHHHhhhhhHHHHhhHHHHH
Q 039797 163 NKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKL---VRKTKELSDIIREQNLKIES-ADAELLRNCDVLEEKSNAIQK 238 (437)
Q Consensus 163 n~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~---a~q~K~q~~~lkqqv~~l~~-~E~E~~~~~~e~E~Kl~~l~~ 238 (437)
-+.+++++.....-...-..+++...+||+++... .-+.+.|.....--|..|++ .|++.+ . -.+++++
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~ 447 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA----Q---GQKKVEE 447 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH----H---HHHHHHH
Confidence 34444444444444444456777778888877643 34566666666666666653 222111 1 1235778
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 039797 239 LENELKELHSVIDQLQEQ 256 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~E 256 (437)
||.||.+|-...+++.-|
T Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888777665554444443
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.81 E-value=26 Score=30.83 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHH--HHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHhhh
Q 039797 151 LLDREVSSVESE--NKRLE-NLVVLYLK--VLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELLRN 225 (437)
Q Consensus 151 ~L~~kI~sLEsE--n~rL~-~~v~e~~~--v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~~~ 225 (437)
.++.+|..+... +.++. ..++-..+ +..|+-.++.++..|...+... ...+-.|+.++..++.+
T Consensus 36 ~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~----~kE~~~lK~el~~~~~k------- 104 (138)
T 3hnw_A 36 YINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK----DKEIYDLKHELIAAQIK------- 104 (138)
T ss_dssp HHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------
Confidence 356666666643 55554 22222222 3555555666666655544433 22222333333322211
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 226 CDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 226 ~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
+..+..++.+|++.+..||.++..|--.|.
T Consensus 105 ----------~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 ----------AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888887777755543
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.78 E-value=33 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcc
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSAS 272 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~ 272 (437)
...|-..+.+|-..|++|.-..|..+.-|+..+..++
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3455566777777788888888877777777776543
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.73 E-value=21 Score=29.58 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=47.2
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 039797 134 LLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKS----ESGLLKRKVKKL 197 (437)
Q Consensus 134 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~----ki~~Lqrk~~~~ 197 (437)
.+..++....-...+|..|.++|..|+.+-.+.+..+.+......+-+.... .+..|.|||+..
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666677788889999999999988888888877666555555555 788888887754
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.14 E-value=17 Score=29.47 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
..+|.+++-||+-.+++-.-+.+|-.++++-..
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999998888888888876543
No 28
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=79.90 E-value=28 Score=32.66 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQN 212 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv 212 (437)
|..+...|+.+..+|.+++.++.....++|.. |=.|+-...+.=|..|+-+++++
T Consensus 144 L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~------L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQGRFEKAVSAKEALETD------LYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556677888888888888888888888877 77777777777777777776554
No 29
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.43 E-value=26 Score=31.17 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 202 KELSDIIREQNLKIESADAELLRNCDVLEEKSNA----IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 202 K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~----l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
-..+..|-.|+-.....-.++-++.+++..|+.. |..-|..+...-..+.+|+.+.+.+...|-+-+.
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344455555555555555666777777777653 3344566666777788888888888777776665
No 30
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.42 E-value=13 Score=32.15 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=40.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 94 KLHYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 94 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
+++-+..|++|+.-|..|+..=-++ .-|...+|..|++++..-.++++.-....-..-.||..|+.++...
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l---------~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENM---------KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678889988888776543332 3345556666666665555555554444444445555555444443
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.59 E-value=34 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.+|..|+..|..+..+|.+|..++...
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777766554433
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.45 E-value=60 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039797 283 TMENYRQLLNECEQLQKDRAAEAKELIYL 311 (437)
Q Consensus 283 ~~e~~~~L~kqvEqLq~dR~seVEELVYL 311 (437)
-.++|++..||++|+.....--....=||
T Consensus 177 D~e~ye~qqKQL~qv~a~~llP~~~~q~l 205 (390)
T 1deq_A 177 DLEDYKNQQKQLEQVIAINLLPSRDIQYL 205 (390)
T ss_pred cHHHHHHHHHHHHhhhhhccccccccccc
Confidence 45788999999999877665555554444
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.44 E-value=6.6 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=28.3
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
.|-+.|++||..|.+|...+..|+.||..|-..+...
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788899999999888888888877776666443
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.38 E-value=11 Score=27.44 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
+++.+||.+.+........|+-+|+.|+.||.-|+.-
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567777777777777778899999999999888643
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.02 E-value=75 Score=32.65 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHH
Q 039797 168 NLVVLYLKVLDQL-QQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAEL 222 (437)
Q Consensus 168 ~~v~e~~~v~~EL-e~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~ 222 (437)
+++.+...+..|+ +.++.+|..||++|......-+.--.+|+.|+.+|+..|..|
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 556667777777776665544444446677777777776655
No 36
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=67.66 E-value=4.1 Score=27.38 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
+.|+.-+.||++||+.|.+.+.+..+-
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777899999999999988877653
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=67.35 E-value=38 Score=28.83 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNS 258 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~ 258 (437)
++++|+.||..||+-|..|-.|+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888888888877663
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.54 E-value=34 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 145 EKSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 145 k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.+.++..|..+|.+|+.||.+|..++..+
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588889999999999999998877654
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.46 E-value=76 Score=28.72 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
.++..+...+..||.||..|+.|+=
T Consensus 110 lq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 110 IENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667778888888887763
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.06 E-value=55 Score=28.70 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039797 179 QLQQWKSESGLLKRKVK 195 (437)
Q Consensus 179 ELe~ar~ki~~Lqrk~~ 195 (437)
+++..+.++..|++++.
T Consensus 111 e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444333
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.53 E-value=57 Score=29.52 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
....|..|+.....|+.|=..|+.+ |++....+..|.-++..-+.+...+..++..|+.||..|-
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeee------l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEV------IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666555555555443 4555566666666666666666666666666666665553
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.38 E-value=22 Score=30.14 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh----cc------cccccchhh--hhHHHHHHHHHHHHHHhh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS----AS------SVTKIEDEG--TTMENYRQLLNECEQLQK 299 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~----~~------s~~~~E~~~--v~~e~~~~L~kqvEqLq~ 299 (437)
+..|-.++..|++-|.+|-.+|..|-.+|.-.-.+ +. ...|+.+.. -.+++.+.|..++|+|+.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788888888888888888888652221 11 112233222 245666778888888864
No 43
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.51 E-value=46 Score=27.29 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 101 ILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 101 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
+...-.-|+.|++.=..|++++-.+++ +.. .-+.. .-..+|..|+..|..+..++.+|.-++.. +..++
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~---~~~--~~~~~---~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn---l~~~~ 86 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKG---QGK--SRLGD---LYEEEMRELRRQVDQLTNDKARVEVERDN---LAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---ccC--CCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 344456788888888899998877664 221 22222 23567888999999999999999887766 55666
Q ss_pred HHHHHH
Q 039797 181 QQWKSE 186 (437)
Q Consensus 181 e~ar~k 186 (437)
+..|.|
T Consensus 87 ~~~k~K 92 (93)
T 3s4r_A 87 MRLREK 92 (93)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 665554
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.85 E-value=17 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 230 EEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 230 E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
++|.+.+.+||.+|.+|...|..|..+...|...+.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888999999888888888888777765553
No 45
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=61.54 E-value=13 Score=28.58 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 230 EEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 230 E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
++|...+.+||.+|.+|...|..|..+...|...|
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999998888777766544
No 46
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=60.82 E-value=19 Score=29.03 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=36.7
Q ss_pred hHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 129 KEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 129 KEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
++-+-.+..|+..+.+++.-.+.|+..|=||--||.-|+..+..
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 33344588899999999999999999999999999999877654
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.36 E-value=83 Score=27.11 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhh
Q 039797 203 ELSDIIREQNLKIE 216 (437)
Q Consensus 203 ~q~~~lkqqv~~l~ 216 (437)
+.+-+|++|+....
T Consensus 62 E~I~vLkaQv~IY~ 75 (110)
T 2v4h_A 62 ETVPVLKAQADIYK 75 (110)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777776654
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=60.14 E-value=39 Score=27.72 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREV 156 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI 156 (437)
++-+||..||-.|.+|..--.--| .-||-.-+.+..|+.+|..+.++|..|..++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyE------kKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYE------WKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788888888887754322222 2344455566666666666666666555443
No 49
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.56 E-value=23 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 168 NLVVLYLKVLDQLQQWKSESGLLKRKVKKLV 198 (437)
Q Consensus 168 ~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a 198 (437)
+.+..+.+|..|++.++.+|..||+|++.+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999887663
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.98 E-value=65 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
....+|.+|..|.+.+..|+.+......+|..|...+
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999998888888887777643
No 51
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.60 E-value=75 Score=26.33 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 199 RKTKELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 199 ~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
.-+++++..||+.=-.++-... +.+|- .+|++...+||.++..|.+....|..|+..+..-++.....
T Consensus 17 gls~eev~~lKq~RRtlKNRgy--Aq~CR--~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGY--AQSCR--YKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776665544 22222 26677778899999999999999988888888777766543
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.74 E-value=79 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039797 99 LEILNLRFQIEELQKRELETKMQFARY 125 (437)
Q Consensus 99 ~EI~~Lr~lVeeLqERE~~LE~eLLEy 125 (437)
.++..|..-+..|+.-|.+|-.+|.+.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~l 30 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDV 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888888888777666543
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.36 E-value=1.9e+02 Score=30.25 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039797 98 ELEILNLRFQIEELQKRE 115 (437)
Q Consensus 98 ~~EI~~Lr~lVeeLqERE 115 (437)
...|..|+..|.+|....
T Consensus 99 ~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhh
Confidence 345666666666664443
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=55.90 E-value=1.2e+02 Score=27.38 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=34.0
Q ss_pred HHHHhhhHHhHHHhhhhhHHHHhhH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 210 EQNLKIESADAELLRNCDVLEEKSN----AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 210 qqv~~l~~~E~E~~~~~~e~E~Kl~----~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
..+-.|+..+.....+.+..+.++. .+++-|..+..--|....||.+...|-.+|..+..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345445544444444444422 35566666666667777777777777777765543
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=55.41 E-value=85 Score=25.70 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQ----WKSESGLLKRKVKKL 197 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~----ar~ki~~Lqrk~~~~ 197 (437)
+..++....-...+|.-|.++|..|+.+-.+.+..+.....-..+-+. |-..+..|.|||+..
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556677778888888888877777766665544333333 333677777777643
No 56
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=54.31 E-value=2.8e+02 Score=31.29 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 110 ELQKRELETKMQFARYHDLKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 110 eLqERE~~LE~eLLEy~~LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
.-||.+.+-+++.+| |++ -..|++|--.-.++.+..+.++-.||+++...+.
T Consensus 667 ~sqEa~Ar~~A~~~e------Qea-~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves 718 (861)
T 2zuo_A 667 NSQEAAAKHEAQRLE------QEA-RGRLERQKILDQSEAEKARKELLELEAMSMAVES 718 (861)
T ss_dssp HHHHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH------HHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 467777777776654 444 4555555555566666677777777777766554
No 57
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.37 E-value=19 Score=26.97 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
...++.|..++..|+.||..|..++..+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777788899999999988876653
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.26 E-value=1.1e+02 Score=26.07 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQ-ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
...||..||..|..| +.++--..+++.. +..+.+++.+. ..++..+..+|..|+++..+++.+++.
T Consensus 36 ~k~Ei~elrr~iq~L-------~~el~~l~~~~~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 36 GKSEISELRRTMQNL-------EIELQSQLSMKASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp -----CHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666544 3444333333322 33445555544 445566677777777776666655443
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.21 E-value=34 Score=25.67 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
+|...+.+||.+|..|...|.+|+.+...|...+.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777778887777777777777666655443
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.95 E-value=40 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
...+..|..++..|+.+|..|..++..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888999999888887754
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=51.33 E-value=63 Score=27.56 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=45.9
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQN 212 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv 212 (437)
..|-|+=..-.=+|+.|..+++-+++....++.+..+. ..+++..|-.+..|+.++.....+-++.=.+|.+++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK---~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~ 92 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK---NKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKL 92 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC----
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666788888888888888887777766665 345666666666676666655444444433344433
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.57 E-value=50 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELE 117 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~ 117 (437)
+-.||+.|+.-++.++..-.+
T Consensus 20 Lkreie~lk~ele~l~~E~q~ 40 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQR 40 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455554444444443333
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.39 E-value=37 Score=25.79 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 230 EEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 230 E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
.+|.+.+.+|+.+|..|...|..|+.+-..|...+
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888888877765554443
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.37 E-value=38 Score=28.87 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=40.8
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
|.|++-.+.++++++..+..+++.+.+.+..|+.+..-|++++.+-..+
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888889999999999999999999999999999888765444
No 65
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.05 E-value=35 Score=36.10 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=3.1
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHH
Q 039797 224 RNCDVLEEKSNAIQKLENELKELHSV 249 (437)
Q Consensus 224 ~~~~e~E~Kl~~l~~LE~Ev~ELrr~ 249 (437)
+-..+.+.|..-...|..++.+.|+.
T Consensus 423 ~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 423 RIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp -------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333444444444443
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.00 E-value=58 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=15.3
Q ss_pred hhHhhHHHHHHHHHhHhhhhHHHHHHHHH
Q 039797 128 LKEQESLLMELRNMIFLEKSYVELLDREV 156 (437)
Q Consensus 128 LKEQea~v~ELe~~L~~k~~Ei~~L~~kI 156 (437)
|+.++..|.+|+.+|..+..+|..|...+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 67
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=48.89 E-value=8.3 Score=28.28 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.7
Q ss_pred hcchhHHHHHhHHHHHHHh
Q 039797 18 KAGVPLAISVAGFICAKMM 36 (437)
Q Consensus 18 k~g~~lalS~ag~i~ar~~ 36 (437)
-||+-+-|.||||||+-.|
T Consensus 26 IVGaLvil~VAGLiysm~R 44 (46)
T 1pfi_A 26 IVGALVILAVAGLIYSMLR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4688888999999998665
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.68 E-value=40 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
...+..|..++..|+.+|..|..++..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888887777766544
No 69
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=48.34 E-value=87 Score=23.74 Aligned_cols=27 Identities=44% Similarity=0.637 Sum_probs=20.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHH
Q 039797 228 VLEEKSNAIQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 228 e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ 254 (437)
|++..-.-+.+||.|.-.|+...+.||
T Consensus 25 EL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 25 ELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 444555567788888888888888887
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.28 E-value=1.1e+02 Score=24.73 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=33.0
Q ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhh
Q 039797 220 AELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQ 269 (437)
Q Consensus 220 ~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~ 269 (437)
.++.....++.+=-..+...+....+|...+..|..+|.+|...|..|+.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33433334443333345566777788888888999999999888666654
No 71
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=47.46 E-value=19 Score=32.45 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh------------ccccccc--chhhhhHHHHHHHHHHHHHHhhh
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQS------------ASSVTKI--EDEGTTMENYRQLLNECEQLQKD 300 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~------------~~s~~~~--E~~~v~~e~~~~L~kqvEqLq~d 300 (437)
+-..||.-++|||+.--+.+.+-..|-.+|++|-+- ++++... --....++.|+|..|+.|+.|+-
T Consensus 79 ~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLaPkiK~Ay~dF~K~aeevqKK 158 (166)
T 1eq1_A 79 ARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKK 158 (166)
T ss_dssp HHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345888899999999999999999999999988543 1122111 12245688999999999998864
No 72
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.35 E-value=51 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
.++..|..++..|+.+|..|..++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666555543
No 73
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.27 E-value=28 Score=26.26 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
...+..|..++..|+.+|..|..++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777666544
No 74
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.18 E-value=1.1e+02 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESE 162 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsE 162 (437)
.+|.+.|..+..||+.|+.-|.+|.+-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~K 32 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSK 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999988754
No 75
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=46.53 E-value=35 Score=25.48 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLNK 263 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~k 263 (437)
.|..-+.+||.+|..|...|..|..+...|...
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788898888888888777777766543
No 76
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.51 E-value=3e+02 Score=29.08 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 039797 282 TTMENYRQLLNECEQLQKDR 301 (437)
Q Consensus 282 v~~e~~~~L~kqvEqLq~dR 301 (437)
|-.+.|+++.||+||+-...
T Consensus 174 VD~~~Ye~~QKqLeQv~a~d 193 (491)
T 1m1j_A 174 VDKEGYDNIQKHLTQASSID 193 (491)
T ss_dssp CCTTTTHHHHHHHHHHTTCC
T ss_pred hcHHHHHHHHHHHHHhhccc
Confidence 34578999999999994433
No 77
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.50 E-value=1.3e+02 Score=25.75 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH-----hhHHHHHHHHHHHHHHHHhHHHHH
Q 039797 200 KTKELSDIIREQNLKIESADAELLRNCDVLEE-----KSNAIQKLENELKELHSVIDQLQE 255 (437)
Q Consensus 200 q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~-----Kl~~l~~LE~Ev~ELrr~nk~LQ~ 255 (437)
....|+.+.+|+ |+..+......-|++.+ |-..+..|+..+.||+|...++..
T Consensus 46 ~~E~QL~iArQK---LkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 46 AHEQQLVTARQK---LKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555553 23333344444445554 455677777777777777666554
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.44 E-value=33 Score=25.64 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 238 KLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
.|-.|..+||..+..|+.+..+|..+|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5557778888888888888888877774
No 79
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.32 E-value=1.5e+02 Score=25.44 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=9.1
Q ss_pred hHhhhhHHHHHHHHHHhHHH
Q 039797 142 IFLEKSYVELLDREVSSVES 161 (437)
Q Consensus 142 L~~k~~Ei~~L~~kI~sLEs 161 (437)
|..+..+++.|..+|..++.
T Consensus 40 L~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 80
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.28 E-value=49 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 231 EKSNAIQKLENELKELHSVIDQLQEQNSELLN 262 (437)
Q Consensus 231 ~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~ 262 (437)
+|.....+|+.++.+|...|.+|..+-..|..
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555544433
No 81
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.96 E-value=20 Score=37.93 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcc
Q 039797 237 QKLENELKELHSVIDQLQEQNSELLNKLQEWHQSAS 272 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~ 272 (437)
.++|.++..|+.....-..++..|..++..++..+.
T Consensus 387 ~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 422 (575)
T 2i1j_A 387 NELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVS 422 (575)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777788888888888876543
No 82
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.83 E-value=2.5e+02 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHhh
Q 039797 239 LENELKELHSVIDQLQEQNSELLNKLQEWH 268 (437)
Q Consensus 239 LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae 268 (437)
||.+|-.-.+..++|+-|.-+|..+|+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443
No 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.57 E-value=29 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
...+..|..++..|+.+|..|..++..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888777665543
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.33 E-value=55 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
++.-..-|..|+.||..|..++.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888888877665
No 85
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.79 E-value=40 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
+++.||..|+||-..|..|+.|-.-|...|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 356788888888888888887776665555
No 86
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.73 E-value=30 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKM 120 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~ 120 (437)
.++.|+..|...|++||+|=-+||-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999888874
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.41 E-value=1.6e+02 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHhhhhc
Q 039797 241 NELKELHSVIDQLQEQNSELLNKLQEWHQSA 271 (437)
Q Consensus 241 ~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~ 271 (437)
..+.+|-..|++|+-..|.-+.=|+..+...
T Consensus 56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 56 KYVRELEQANDDLERAKRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence 4455556667777777777666666666543
No 88
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.34 E-value=3.4e+02 Score=28.85 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.2
Q ss_pred ccccccCCC
Q 039797 50 SYEKFRDDE 58 (437)
Q Consensus 50 ~~~~~~~~~ 58 (437)
++.+.|+++
T Consensus 299 ~yv~ain~g 307 (592)
T 1f5n_A 299 TYVNAISSG 307 (592)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhCC
Confidence 344455544
No 89
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.62 E-value=49 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESE 162 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsE 162 (437)
|++|+..|..+..||......|..|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~ 48 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELE 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555544444444444433
No 90
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.54 E-value=83 Score=25.12 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLE 167 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~ 167 (437)
+..+.+||.+|+-....|+.|+..|..-+.+..+|+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666555555555555555554444444433
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.43 E-value=63 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESG 188 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~ 188 (437)
....+..++..|+.||..|+.+|.+ +..|+..+|.-+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~---L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQ---LSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3445667888889999998888774 3445555544443
No 92
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.78 E-value=1.7e+02 Score=24.82 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 97 YELEILNLRFQIEELQKRELETKMQFARYHDLKEQ-ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 97 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
...||..||..|..|+ .++--..+++.. +..+.+++.+. ..++..+..+|..|+++..+++.+++.
T Consensus 34 ~k~Ei~elrr~iq~L~-------~el~~l~~~~~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLR-------AEIDNVKKQCANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567777777776543 444333333322 33444555444 345666677777777776666655543
No 93
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=40.71 E-value=2e+02 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 174 LKVLDQLQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 174 ~~v~~ELe~ar~ki~~Lqrk~~~~ 197 (437)
..-.+||...|+++..+||.+.+-
T Consensus 56 ~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 56 VAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344566777777777777776654
No 94
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.80 E-value=34 Score=24.19 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
++.||.+|+||=..|..|+.|-.-|-.-|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34667777777777777766655554433
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.37 E-value=1.9e+02 Score=30.99 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=25.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHH
Q 039797 172 LYLKVLDQL-QQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAEL 222 (437)
Q Consensus 172 e~~~v~~EL-e~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~ 222 (437)
+...+..|+ +.++.+|--|+.+|+....+-+..--+|..|+.+|+..|-.|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 255555555555555554222222234555666666555533
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=39.34 E-value=1.4e+02 Score=24.50 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhHHHH
Q 039797 147 SYVELLDREVSSVESE 162 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsE 162 (437)
-||..|+.+|+.|+.|
T Consensus 26 qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 26 QELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666655444
No 97
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=38.83 E-value=1.9e+02 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=12.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 156 VSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 156 I~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
...|+.+...|+.++.-....+.+|
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~L 32 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQEL 32 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444
No 98
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=38.29 E-value=1.3e+02 Score=26.66 Aligned_cols=82 Identities=17% Similarity=0.052 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHhhH----HHHHHHHHhHh----hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 105 RFQIEELQKRELETKMQFARYHDLKEQES----LLMELRNMIFL----EKSYVELLDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 105 r~lVeeLqERE~~LE~eLLEy~~LKEQea----~v~ELe~~L~~----k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
-+++.+|+|...+|+.=..+-..|++.-- .+..++.++.. -.+.+|.|.+.+.||+++.+==+.-+.+--.-
T Consensus 5 tSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrk 84 (130)
T 3cl3_D 5 SGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRK 84 (130)
T ss_dssp ----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888766666555544221 23334444433 46889999999999998865444333333344
Q ss_pred HHHHHHHHHH
Q 039797 177 LDQLQQWKSE 186 (437)
Q Consensus 177 ~~ELe~ar~k 186 (437)
.++|..|=.+
T Consensus 85 LAqLQ~AY~~ 94 (130)
T 3cl3_D 85 LAQLQVAYHQ 94 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555444433
No 99
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.34 E-value=2.6e+02 Score=26.05 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039797 177 LDQLQQWKSESGLLKRKVKKLVRKTKE 203 (437)
Q Consensus 177 ~~ELe~ar~ki~~Lqrk~~~~a~q~K~ 203 (437)
+.=|-.=|.|||.||.++-..|.+...
T Consensus 181 ~~lLNeKK~KIR~lq~~Ll~~~~~~~~ 207 (213)
T 1ik9_A 181 ILVLNEKKTKIRSLHNKLLNAAQEREK 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 333455677888888777666555443
No 100
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.80 E-value=1.6e+02 Score=23.60 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=17.6
Q ss_pred HHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 039797 137 ELRNMIFLEKSYVELLDREVSSVESENKRLENL 169 (437)
Q Consensus 137 ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~ 169 (437)
.|+..+.-.......|..+...|..+...|..+
T Consensus 25 ~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 25 KMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333444444555566666666666666
No 101
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.44 E-value=4.1e+02 Score=28.06 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHHh
Q 039797 181 QQWKSESGLLKRKVKKLVRKTKELSDIIREQNLKIESADAELL 223 (437)
Q Consensus 181 e~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv~~l~~~E~E~~ 223 (437)
+.++.+|--|+++|......-+.--.+|+.|+.+|+..|..+.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665552223333356667777776666553
No 102
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.34 E-value=1.6e+02 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.021 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
.++..+...|..|+++..++++++..
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666655443
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.07 E-value=38 Score=26.79 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=4.8
Q ss_pred HHHHHHHHhHHHH
Q 039797 150 ELLDREVSSVESE 162 (437)
Q Consensus 150 ~~L~~kI~sLEsE 162 (437)
..|...|..|+.|
T Consensus 53 ~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 53 DQLRQKVRQLEEE 65 (70)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 104
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.45 E-value=1.5e+02 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSE 259 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~e 259 (437)
.++.-..|+.||||....|+-|...
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455668899999988888877543
No 105
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.31 E-value=2e+02 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 145 EKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 145 k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
...||..+++.|.+|+.|...|..+-
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555555555555544444443
No 106
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.10 E-value=79 Score=24.93 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=23.5
Q ss_pred HHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039797 137 ELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYL 174 (437)
Q Consensus 137 ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~ 174 (437)
+.+........+|.-|.++|..||.+-.+.++.+....
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556677777777777777766666655443
No 107
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.12 E-value=26 Score=33.28 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 157 SSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKR 192 (437)
Q Consensus 157 ~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqr 192 (437)
..|.+||++|+.++.++.....+++..+.++..|++
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777777777777777776665
No 108
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=33.97 E-value=2.3e+02 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039797 177 LDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQ 211 (437)
Q Consensus 177 ~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqq 211 (437)
.++|+.+...-..|...++.-.+..+.|+-.|..+
T Consensus 19 ~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~ 53 (112)
T 1x79_B 19 NDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLR 53 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444443
No 109
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=33.55 E-value=18 Score=29.62 Aligned_cols=11 Identities=36% Similarity=1.060 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 039797 309 IYLRWANACLR 319 (437)
Q Consensus 309 VYLRWvNACLR 319 (437)
||=.||.||..
T Consensus 70 VYs~WiDac~~ 80 (85)
T 1wii_A 70 VYSDWIDACES 80 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 67788888753
No 110
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.15 E-value=39 Score=23.47 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 237 QKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 237 ~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
..||..|+||-..|.+|+.|-.-|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678888888888888887765443
No 111
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.98 E-value=1.5e+02 Score=26.31 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhHHHhh
Q 039797 252 QLQEQNSELLNKLQEWH 268 (437)
Q Consensus 252 ~LQ~EK~eL~~kL~~Ae 268 (437)
.++..+..|..+|..++
T Consensus 100 ~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.91 E-value=1.3e+02 Score=22.42 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLE 167 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~ 167 (437)
|...+..|-+.|.+|.
T Consensus 14 l~~~l~~L~~rN~rL~ 29 (51)
T 3m91_A 14 LEARIDSLAARNSKLM 29 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555553
No 113
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.49 E-value=2e+02 Score=23.77 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 138 LRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVK 195 (437)
Q Consensus 138 Le~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~ 195 (437)
|+|+..+.+-....+. .+..||.++..|+.++.. +..|+..+...+..++.|.+
T Consensus 33 lKNRgyAq~CR~Kr~~-q~~~LE~e~~~L~~e~~~---L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 33 LKNRGYAQSCRYKRVQ-QKHHLENEKTQLIQQVEQ---LKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555553 335666666666554433 33444444444555544443
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.41 E-value=2.9e+02 Score=28.82 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
.+..++..|+++.+.+..++...
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655543
No 115
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.01 E-value=1.6e+02 Score=21.98 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHhhhh
Q 039797 240 ENELKELHSVIDQLQEQNSELLNKLQEWHQS 270 (437)
Q Consensus 240 E~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~ 270 (437)
+....+|++.+..|-..|..|+.-|..|...
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999888877653
No 116
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.68 E-value=94 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e 172 (437)
|++.|..+|..|+.+...|++++++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777777777777777777754
No 117
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.67 E-value=2.5e+02 Score=24.20 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 130 EQESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRK 193 (437)
Q Consensus 130 EQea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk 193 (437)
|-...-.||++-|..-.-.++.|...|...+..-.+..=...+...=+.=+...|.+++.++..
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888988888899999999999988776666322223333233335566666665554
No 118
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.45 E-value=2.3e+02 Score=24.51 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH-----hhHHHHHHHHHHHHHHHHhHHHH
Q 039797 200 KTKELSDIIREQNLKIESADAELLRNCDVLEE-----KSNAIQKLENELKELHSVIDQLQ 254 (437)
Q Consensus 200 q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~-----Kl~~l~~LE~Ev~ELrr~nk~LQ 254 (437)
....|+.+.+|+ |+..+......-+++.+ |-..+..|+..+.||+|...+..
T Consensus 33 ~~E~QL~~ArQK---LkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 33 AHEGQLVIARQK---VRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 23333334444455554 34456666666666666554443
No 119
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.12 E-value=2.7e+02 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 039797 234 NAIQKLENELKELHSVIDQL 253 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~L 253 (437)
+.|++.+.||+.||+-|-.|
T Consensus 85 q~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 85 HKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhh
Confidence 34556666666666655444
No 120
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.33 E-value=71 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+..||..|+||=..|.+|+.|..-|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45678888888888888887766554
No 121
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.80 E-value=1.8e+02 Score=21.84 Aligned_cols=40 Identities=5% Similarity=0.029 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 146 KSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESG 188 (437)
Q Consensus 146 ~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~ 188 (437)
+..|..|.-+|..|.++-.-|+..+. .+..|-++|..+|.
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~---~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQ---AAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 45566777777777777666666444 56666666655553
No 122
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.61 E-value=2.3e+02 Score=23.15 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039797 183 WKSESGLL 190 (437)
Q Consensus 183 ar~ki~~L 190 (437)
+..+++.|
T Consensus 50 ae~rn~eL 57 (81)
T 1wt6_A 50 AEARNRDL 57 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.59 E-value=1.4e+02 Score=30.21 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 039797 188 GLLKRKVK 195 (437)
Q Consensus 188 ~~Lqrk~~ 195 (437)
+.|+.+++
T Consensus 48 r~l~n~~~ 55 (403)
T 4etp_A 48 RTLHNELQ 55 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 124
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.46 E-value=1.1e+02 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVLDQLQQW 183 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~a 183 (437)
-|...+..|+.||++|..-+.+-.++++.||..
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777766654
No 125
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.13 E-value=2.4e+02 Score=23.12 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhhhhcccccccchhhhhHHHHHHHHHHHHHHhhhhHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELLNKLQEWHQSASSVTKIEDEGTTMENYRQLLNECEQLQKDRAAE 304 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~Ae~~~~s~~~~E~~~v~~e~~~~L~kqvEqLq~dR~se 304 (437)
.+++|+.+=.+|.+....|+.++..+..-|.+.+..+.-+. ..+...-.+|+++..|+-.+++++.+-
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~--~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD--QEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777766665322221 111222345777777877777777663
No 126
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.90 E-value=2.2e+02 Score=25.24 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKMQ 121 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~e 121 (437)
+++.++..+|..+...+.|...++..
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~l 30 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQL 30 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888887777766653
No 127
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.85 E-value=1.5e+02 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 039797 236 IQKLENELKELHS 248 (437)
Q Consensus 236 l~~LE~Ev~ELrr 248 (437)
++.|-.|+.+||.
T Consensus 115 I~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 115 INAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555544
No 128
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.72 E-value=1e+02 Score=23.01 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039797 180 LQQWKSESG 188 (437)
Q Consensus 180 Le~ar~ki~ 188 (437)
++..|.|+.
T Consensus 28 ~~eLk~k~~ 36 (53)
T 2yy0_A 28 LAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 129
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.63 E-value=62 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=13.7
Q ss_pred hHhhHHHHHHHHHhHhhhhHHHHHHHHH
Q 039797 129 KEQESLLMELRNMIFLEKSYVELLDREV 156 (437)
Q Consensus 129 KEQea~v~ELe~~L~~k~~Ei~~L~~kI 156 (437)
+..+..+.+||..|..+..+|..|+..+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444333
No 130
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.34 E-value=3.3e+02 Score=24.49 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 96 HYELEILNLRFQIEELQKRELETKM 120 (437)
Q Consensus 96 ~~~~EI~~Lr~lVeeLqERE~~LE~ 120 (437)
+++.++..+|..+..++.|-..|+.
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~ 41 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQ 41 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999988888877666664
No 131
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.20 E-value=76 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039797 235 AIQKLENELKELHSVIDQLQEQNSELL 261 (437)
Q Consensus 235 ~l~~LE~Ev~ELrr~nk~LQ~EK~eL~ 261 (437)
+++.||..|+||=..|..|+.|-.-|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345778888888888877777755443
No 132
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.95 E-value=1.2e+02 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
-.+++.+|.+|.+.|..|..+...|...+..-
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555555433
No 133
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.58 E-value=1.1e+02 Score=27.84 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 039797 177 LDQLQQWKSESG 188 (437)
Q Consensus 177 ~~ELe~ar~ki~ 188 (437)
..+++.++..+.
T Consensus 97 ~~~~~~a~~~~~ 108 (277)
T 2f1m_A 97 KQEYDQALADAQ 108 (277)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 134
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.55 E-value=1.4e+02 Score=31.16 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..++..|+++.+.+..++..
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555544444
No 135
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.47 E-value=2.5e+02 Score=22.80 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH-----hhHHHHHHHHHHHHHHHHhHHHHH
Q 039797 198 VRKTKELSDIIREQNLKIESADAELLRNCDVLEE-----KSNAIQKLENELKELHSVIDQLQE 255 (437)
Q Consensus 198 a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~-----Kl~~l~~LE~Ev~ELrr~nk~LQ~ 255 (437)
......|+.+.+|+ |+..+......-|++.+ |-..+..|+..+.+|+|...++..
T Consensus 14 ~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 14 ITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555554 23334444444455554 455677788888888877766654
No 136
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.77 E-value=1.2e+02 Score=31.04 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVL 172 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e 172 (437)
+..++..|+++.+.+..++..
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 137
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.65 E-value=2.8e+02 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSE 186 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~k 186 (437)
+.+..-|-.++..-..+...|+.++...++|++.+.++++++....+|+-.|--+
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555566777889999999999999999999988887777666443
No 138
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.15 E-value=1.4e+02 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWK 184 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar 184 (437)
....+..++..|+.||..|+.+|..+ ..|+..+|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L---~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQL---SRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34456678888999999998887743 44444443
No 139
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.80 E-value=3.7e+02 Score=24.19 Aligned_cols=34 Identities=3% Similarity=-0.003 Sum_probs=19.8
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLEN 168 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~ 168 (437)
...|+-.|..-..++.....+|..|+..+.++..
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~ 48 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT 48 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655566666666666666665555444
No 140
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.59 E-value=91 Score=30.24 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 039797 149 VELLDREVSSVESENKRLENL 169 (437)
Q Consensus 149 i~~L~~kI~sLEsEn~rL~~~ 169 (437)
+..|...+..|++.|++|.+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~ 76 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMET 76 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666543
No 141
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.98 E-value=1.5e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHh
Q 039797 234 NAIQKLENELKELHSVIDQLQEQNSELLNKLQEW 267 (437)
Q Consensus 234 ~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~~A 267 (437)
....+++..|.+|.+.|..|+.+...|...+..-
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777776666655443
No 142
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.51 E-value=95 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHH
Q 039797 243 LKELHSVIDQLQEQNSELLNKLQE 266 (437)
Q Consensus 243 v~ELrr~nk~LQ~EK~eL~~kL~~ 266 (437)
|+||-....+||.||..|-.||..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777778999999999999963
No 143
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.43 E-value=2.9e+02 Score=24.54 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 039797 133 SLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQ-----LQQWKSESGLLKRKVKKL 197 (437)
Q Consensus 133 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~E-----Le~ar~ki~~Lqrk~~~~ 197 (437)
+...+|..++..-+..+..|...+..|.......+.-+.+|..+..- +-..|.++.-|+.|+...
T Consensus 59 ~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHI 128 (140)
T 1xaw_A 59 QEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHI 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
No 144
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.31 E-value=2.4e+02 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLK 191 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lq 191 (437)
|...|..|+.|...|..+..++..+..+...+-+-|..|-
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555544444443
No 145
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.72 E-value=3.3e+02 Score=22.91 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHhHHHhhhhhHHHH-----hhHHHHHHHHHHHHHHHHhHHHHH
Q 039797 197 LVRKTKELSDIIREQNLKIESADAELLRNCDVLEE-----KSNAIQKLENELKELHSVIDQLQE 255 (437)
Q Consensus 197 ~a~q~K~q~~~lkqqv~~l~~~E~E~~~~~~e~E~-----Kl~~l~~LE~Ev~ELrr~nk~LQ~ 255 (437)
+......|+.+.+|+ |+..+......-+++.+ +-..+..|+..+.+|+|...++..
T Consensus 13 e~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 13 NITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555554 23334444444455554 445567777777777777666655
No 146
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.71 E-value=2.3e+02 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039797 182 QWKSESGLLKRKVKKLVRKTKELSDIIREQN 212 (437)
Q Consensus 182 ~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqqv 212 (437)
..+.++..|-..++..+++.|..+..|++.+
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 147
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.15 E-value=6.1e+02 Score=25.86 Aligned_cols=9 Identities=0% Similarity=0.265 Sum_probs=3.5
Q ss_pred HHHHHHHhh
Q 039797 207 IIREQNLKI 215 (437)
Q Consensus 207 ~lkqqv~~l 215 (437)
.|++++..|
T Consensus 123 ~l~~~i~~l 131 (409)
T 1m1j_C 123 QLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 148
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.11 E-value=1.3e+02 Score=21.22 Aligned_cols=29 Identities=38% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039797 151 LLDREVSSVESENKRLENLVVLYLKVLDQ 179 (437)
Q Consensus 151 ~L~~kI~sLEsEn~rL~~~v~e~~~v~~E 179 (437)
-|..+++.|-.+|.-|+++|..+..+..+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35667777777777777777666655544
No 149
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.06 E-value=92 Score=30.45 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 039797 155 EVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
+|++|++++++|++++.++.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666654433
No 150
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.06 E-value=1.5e+02 Score=20.79 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 039797 147 SYVELLDREVSSVESENKRLENLVV 171 (437)
Q Consensus 147 ~Ei~~L~~kI~sLEsEn~rL~~~v~ 171 (437)
.....+-.++..||.+|..|+.++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678889999999887764
No 151
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.86 E-value=2.4e+02 Score=21.06 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHH
Q 039797 211 QNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQ 252 (437)
Q Consensus 211 qv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~ 252 (437)
++.++.......+.+..+++.. +.++|.|++-|++..++
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~---c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFS---CSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHH
Confidence 3444444444444444455432 45777787777776653
No 152
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.57 E-value=4.2e+02 Score=23.72 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhHHhHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 039797 203 ELSDIIREQNLKIESADAELLRNCDVLEEKSNAIQKLENELKELHSVIDQLQEQNSELLNKL 264 (437)
Q Consensus 203 ~q~~~lkqqv~~l~~~E~E~~~~~~e~E~Kl~~l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL 264 (437)
.+|..|..+.-.-+..-..+.+.+.-+++- +.+||.++..-+..++.++.+......-|
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~---id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKS---IDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333444444433 44666776666666666666655443333
No 153
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=21.86 E-value=2.7e+02 Score=23.03 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 039797 282 TTMENYRQLLNECEQLQK 299 (437)
Q Consensus 282 v~~e~~~~L~kqvEqLq~ 299 (437)
+-.+.|+++.||++|+-.
T Consensus 63 vd~~~Y~~~qKql~q~~a 80 (87)
T 1fzc_A 63 VDLKDYEDQQKQLEQVIA 80 (87)
T ss_dssp CCTHHHHHHHHHHHHHHH
T ss_pred hcHHhHHHHHHHHHHHhh
Confidence 345889999999999853
No 154
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.73 E-value=72 Score=22.14 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 039797 152 LDREVSSVESENKRLENLVVLYLKV 176 (437)
Q Consensus 152 L~~kI~sLEsEn~rL~~~v~e~~~v 176 (437)
|..+++.|=.+|..|+++|..+..+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5677888888888888887766554
No 155
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.70 E-value=1.3e+02 Score=22.53 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQL 180 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~EL 180 (437)
|..|.|++.-+-.|-..|.--+..|+-.|..|+..++.+.+-..-|
T Consensus 5 vaqlknrvayklkenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 5 VAQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4556666666666667777778888888888887776655544443
No 156
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.38 E-value=2.9e+02 Score=22.69 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 039797 150 ELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 150 ~~L~~kI~sLEsEn~rL~~~v 170 (437)
+.+...|..|..+|..|++.+
T Consensus 56 e~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666443
No 157
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.16 E-value=2e+02 Score=29.19 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=6.8
Q ss_pred HHHhHHHHHHHHHHHH
Q 039797 155 EVSSVESENKRLENLV 170 (437)
Q Consensus 155 kI~sLEsEn~rL~~~v 170 (437)
++..|+++.+.+..++
T Consensus 43 ~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 43 RLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 158
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.82 E-value=2.8e+02 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLYLKVLDQLQ 181 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe 181 (437)
|-+.|...|..|+.|+..|+.+..+...+....+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788888888888888777777766665543
No 159
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.76 E-value=3.2e+02 Score=28.59 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 169 LVVLYLKVLDQLQQWKSESGLLKRKVKK 196 (437)
Q Consensus 169 ~v~e~~~v~~ELe~ar~ki~~Lqrk~~~ 196 (437)
.+++...+..++..+..+.+.++.++..
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554555555554443
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.74 E-value=1.4e+02 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSEL 260 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL 260 (437)
++.||..|+||=..|..|+.|-.-|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3467777777777777776665444
No 161
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.72 E-value=1.1e+02 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039797 135 LMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVL 177 (437)
Q Consensus 135 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~ 177 (437)
+.++..+|..|...|+.|...+..=..+...|+.++..+..|.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667777777777777777777777777776666665554
No 162
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.61 E-value=7.9e+02 Score=26.20 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039797 132 ESLLMELRNMIFLEKSYVELLDREVSSVESENKRLENLVVLYLKVLDQLQQWKSESGLLKRKVKKLVRKTKELSDIIREQ 211 (437)
Q Consensus 132 ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v~e~~~v~~ELe~ar~ki~~Lqrk~~~~a~q~K~q~~~lkqq 211 (437)
++.|.-+++++...+.|..-.+...+.++.|...++++++....=..|-.+...++..++.=++.-+.=-+.=...+..|
T Consensus 369 eSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTAdFykkIsEkyGeK 448 (602)
T 1cii_A 369 ESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAK 448 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 039797 212 NLKI 215 (437)
Q Consensus 212 v~~l 215 (437)
...+
T Consensus 449 ykkI 452 (602)
T 1cii_A 449 AEQL 452 (602)
T ss_dssp HHHH
T ss_pred HHHH
No 163
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.60 E-value=2.1e+02 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039797 161 SENKRLENLVVLYLKVLDQLQQWKSESG 188 (437)
Q Consensus 161 sEn~rL~~~v~e~~~v~~ELe~ar~ki~ 188 (437)
.+-+|.+...........+++.++....
T Consensus 97 ~~~~r~~~L~~~~~~s~~~~~~a~~~~~ 124 (341)
T 3fpp_A 97 VTYSRQQRLAQTQAVSQQDLDNAATEMA 124 (341)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 3334444444444444455555544433
No 164
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.51 E-value=1.7e+02 Score=29.62 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=20.7
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 039797 136 MELRNMIFLEKSYVELLDREVSSVESENKRLENLV 170 (437)
Q Consensus 136 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~rL~~~v 170 (437)
..|+.+|.....+++.+..++..+++++..+.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666666666666665554
No 165
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=20.48 E-value=1.3e+02 Score=20.37 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039797 148 YVELLDREVSSVESENKRLENLVVLY 173 (437)
Q Consensus 148 Ei~~L~~kI~sLEsEn~rL~~~v~e~ 173 (437)
|+..|.+++..-++||-.|+.+++++
T Consensus 2 evaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45567788888888888888877764
No 166
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.47 E-value=2.5e+02 Score=20.44 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 039797 238 KLENELKELHSVIDQLQEQNSEL 260 (437)
Q Consensus 238 ~LE~Ev~ELrr~nk~LQ~EK~eL 260 (437)
+||....||.....-||-||.-|
T Consensus 14 ~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444444444444455554444
No 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.39 E-value=1.3e+02 Score=23.41 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 039797 236 IQKLENELKELHSVIDQLQEQNSELLNKLQ 265 (437)
Q Consensus 236 l~~LE~Ev~ELrr~nk~LQ~EK~eL~~kL~ 265 (437)
|+.|..++.+|.....+|..++..|..+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555554443
Done!