BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039798
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
           At4g01050 From Arabidopsis Thaliana
 pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
           Rhodanese Homology Domain At4g01050(175-295) From
           Arabidopsis Thaliana
          Length = 134

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 64/108 (59%)

Query: 63  AIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSN 122
           A +A+ KL  D NAQLLDIR       +GSPN+K L K  V   +   D+ GFL  +   
Sbjct: 9   AKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLK 68

Query: 123 FADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170
           F DP NT + ILD FDGNS   AEL+  NGFK AYAI  G  G +GWL
Sbjct: 69  FKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWL 116


>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
          Length = 148

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 61  ISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGD---ENGFLN 117
           I+ + A++ L ++P A L+D+R +     +G P+L SL + VV VE+   D    + FL 
Sbjct: 7   ITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLA 66

Query: 118 NVLSNF---ADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAI---------SGGVRG 165
            +       AD     V  L      S+ AAE+  + G   AY +         + G RG
Sbjct: 67  ELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRG 126

Query: 166 KKGWLAI 172
             GW A+
Sbjct: 127 ATGWRAV 133


>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
           Transferase Homodimer From Wolinella Succinogenes
 pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
           Transferase Homodimer From Wolinella Succinogenes
          Length = 137

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 60  FISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNV 119
            +S  DA++ L+ +P+  L+D+R+   + ++G P++K+ K              G L  +
Sbjct: 24  MLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHM----------SRGKLEPL 73

Query: 120 LSNFA-DPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGV 163
           L+    DP   VV         +L A + L + GFK  Y   GG+
Sbjct: 74  LAKSGLDPEKPVVVFCKTAARAAL-AGKTLREYGFKTIYNSEGGM 117


>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
          Length = 108

 Score = 32.3 bits (72), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 18/109 (16%)

Query: 55  LSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENG 114
           + + + I+  DA QKL+ +  A L+DIR+         P   ++  +V            
Sbjct: 1   MDQFECINVADAHQKLQ-EKEAVLVDIRD---------PQSFAMGHAVQAFHLTNDTLGA 50

Query: 115 FLNNVLSNFADPINTVVCILDNFDGNSLK-AAELLYKNGFKEAYAISGG 162
           F+ +  ++F  P+  V+C    + GNS K AA+ L + G+   Y+I GG
Sbjct: 51  FMRD--NDFDTPV-MVMC----YHGNSSKGAAQYLLQQGYDVVYSIDGG 92


>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
          Length = 108

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)

Query: 55  LSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENG 114
           + + + I+  DA QKL+ +  A L+DIR+         P   ++  +V            
Sbjct: 1   MDQFECINVADAHQKLQ-EKEAVLVDIRD---------PQSFAMGHAVQAFHLTNDTLGA 50

Query: 115 FLNNVLSNFADPINTVVCILDNFDGNSLK-AAELLYKNGFKEAYAISGG 162
           F+ +  ++F  P+     ++  + GNS K AA+ L + G+   Y+I GG
Sbjct: 51  FMRD--NDFDTPV-----MVMXYHGNSSKGAAQYLLQQGYDVVYSIDGG 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,952,187
Number of Sequences: 62578
Number of extensions: 218665
Number of successful extensions: 446
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 11
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)