Query 039798
Match_columns 229
No_of_seqs 252 out of 1903
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 13:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.8 4.2E-18 9E-23 129.0 8.8 98 59-170 2-100 (101)
2 PLN02160 thiosulfate sulfurtra 99.7 1.1E-17 2.4E-22 134.7 9.8 109 57-182 13-129 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.7 1.7E-17 3.8E-22 127.4 9.2 99 56-170 7-106 (109)
4 cd01523 RHOD_Lact_B Member of 99.7 3.5E-17 7.5E-22 123.6 8.7 96 61-170 1-99 (100)
5 KOG1530 Rhodanese-related sulf 99.7 5.6E-17 1.2E-21 129.1 9.2 109 56-179 20-134 (136)
6 PRK00162 glpE thiosulfate sulf 99.7 5.8E-17 1.3E-21 124.2 9.1 103 57-181 3-105 (108)
7 cd01534 4RHOD_Repeat_3 Member 99.7 1.6E-16 3.5E-21 119.1 8.1 93 61-170 1-94 (95)
8 cd01527 RHOD_YgaP Member of th 99.7 2.1E-16 4.6E-21 118.9 8.0 98 59-179 2-99 (99)
9 cd01526 RHOD_ThiF Member of th 99.7 2.6E-16 5.7E-21 123.5 8.3 110 56-178 5-120 (122)
10 cd01522 RHOD_1 Member of the R 99.7 6.4E-16 1.4E-20 120.8 9.9 98 61-170 1-103 (117)
11 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 5.4E-16 1.2E-20 128.4 9.6 113 54-179 31-162 (162)
12 cd01530 Cdc25 Cdc25 phosphatas 99.6 1.2E-15 2.6E-20 120.3 8.4 97 59-170 2-120 (121)
13 cd01444 GlpE_ST GlpE sulfurtra 99.6 1.6E-15 3.4E-20 112.9 8.6 93 61-170 2-95 (96)
14 PRK01415 hypothetical protein; 99.6 1.8E-15 3.9E-20 133.3 8.5 100 57-170 110-210 (247)
15 cd01528 RHOD_2 Member of the R 99.6 3.7E-15 7.9E-20 112.8 8.7 96 60-170 1-97 (101)
16 cd01520 RHOD_YbbB Member of th 99.6 4.6E-15 1E-19 117.6 9.4 96 61-170 1-125 (128)
17 COG0607 PspE Rhodanese-related 99.6 1.9E-15 4.2E-20 114.5 6.8 93 70-180 15-107 (110)
18 cd01521 RHOD_PspE2 Member of t 99.6 5.3E-15 1.1E-19 114.0 8.9 101 58-179 7-110 (110)
19 cd01519 RHOD_HSP67B2 Member of 99.6 4.4E-15 9.5E-20 112.5 8.2 97 62-170 2-105 (106)
20 cd01447 Polysulfide_ST Polysul 99.6 7.9E-15 1.7E-19 110.3 7.8 96 61-170 1-100 (103)
21 cd01525 RHOD_Kc Member of the 99.6 9.3E-15 2E-19 110.7 7.8 96 61-170 1-104 (105)
22 PRK05320 rhodanese superfamily 99.6 9.5E-15 2.1E-19 129.4 8.9 100 58-170 109-214 (257)
23 cd01532 4RHOD_Repeat_1 Member 99.6 1.3E-14 2.7E-19 108.6 7.4 85 70-170 5-91 (92)
24 cd01524 RHOD_Pyr_redox Member 99.5 3.1E-14 6.8E-19 105.6 8.2 89 61-170 1-89 (90)
25 cd01535 4RHOD_Repeat_4 Member 99.5 3.3E-14 7.2E-19 115.7 8.5 96 66-182 2-97 (145)
26 PRK00142 putative rhodanese-re 99.5 3.1E-14 6.8E-19 129.4 9.3 102 56-171 109-211 (314)
27 cd01531 Acr2p Eukaryotic arsen 99.5 5.9E-14 1.3E-18 108.5 8.1 99 59-170 2-110 (113)
28 cd01443 Cdc25_Acr2p Cdc25 enzy 99.5 4E-14 8.6E-19 109.6 7.2 98 59-170 2-112 (113)
29 cd01449 TST_Repeat_2 Thiosulfa 99.5 5.6E-14 1.2E-18 108.6 8.0 101 61-170 1-117 (118)
30 smart00450 RHOD Rhodanese Homo 99.5 6.5E-14 1.4E-18 102.7 7.9 92 73-178 2-100 (100)
31 PRK08762 molybdopterin biosynt 99.5 5.8E-14 1.3E-18 130.1 9.4 104 58-182 2-105 (376)
32 cd01448 TST_Repeat_1 Thiosulfa 99.5 1E-13 2.2E-18 108.0 9.2 97 61-170 2-119 (122)
33 PF00581 Rhodanese: Rhodanese- 99.5 1.1E-13 2.4E-18 104.6 7.8 96 62-170 1-111 (113)
34 PRK07878 molybdopterin biosynt 99.5 1.3E-13 2.8E-18 128.7 9.5 106 57-178 285-390 (392)
35 cd01529 4RHOD_Repeats Member o 99.5 9E-14 2E-18 104.2 6.8 85 73-170 10-95 (96)
36 TIGR02981 phageshock_pspE phag 99.5 2E-13 4.4E-18 104.9 8.0 81 73-170 16-96 (101)
37 cd00158 RHOD Rhodanese Homolog 99.5 2.3E-13 4.9E-18 98.6 7.6 86 67-170 3-89 (89)
38 PRK07411 hypothetical protein; 99.4 3.1E-13 6.8E-18 126.1 8.9 108 57-178 280-388 (390)
39 TIGR03167 tRNA_sel_U_synt tRNA 99.4 4.8E-13 1E-17 121.6 8.5 123 75-202 2-151 (311)
40 PRK10287 thiosulfate:cyanide s 99.4 5.9E-13 1.3E-17 102.9 7.3 81 73-170 18-98 (104)
41 PRK11784 tRNA 2-selenouridine 99.4 7.3E-13 1.6E-17 121.9 8.9 134 62-202 4-165 (345)
42 PRK05600 thiamine biosynthesis 99.4 1.2E-12 2.6E-17 121.5 8.7 95 60-164 272-369 (370)
43 PRK09629 bifunctional thiosulf 99.3 1.5E-11 3.2E-16 120.8 10.2 109 59-183 9-131 (610)
44 PRK05597 molybdopterin biosynt 99.2 1.8E-11 3.9E-16 113.0 7.5 91 60-170 262-353 (355)
45 PRK11493 sseA 3-mercaptopyruva 99.2 3.7E-11 8E-16 107.2 8.3 96 72-180 165-278 (281)
46 PRK11493 sseA 3-mercaptopyruva 99.2 6.7E-11 1.4E-15 105.5 9.2 108 59-182 5-136 (281)
47 PLN02723 3-mercaptopyruvate su 99.2 1.3E-10 2.8E-15 105.8 9.7 109 58-182 21-152 (320)
48 cd01446 DSP_MapKP N-terminal r 99.2 1.2E-10 2.5E-15 92.3 8.1 96 61-170 2-125 (132)
49 PLN02723 3-mercaptopyruvate su 99.1 1.6E-10 3.4E-15 105.2 8.4 107 61-181 192-317 (320)
50 COG1054 Predicted sulfurtransf 99.1 9.9E-11 2.2E-15 104.9 5.1 94 58-164 112-208 (308)
51 PRK09629 bifunctional thiosulf 99.1 5.1E-10 1.1E-14 110.0 9.3 109 60-181 148-271 (610)
52 cd01445 TST_Repeats Thiosulfat 99.0 1.7E-09 3.7E-14 87.2 9.5 101 61-170 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 98.8 5.6E-09 1.2E-13 100.1 7.4 81 64-161 398-482 (482)
54 KOG2017 Molybdopterin synthase 98.8 4.9E-09 1.1E-13 95.9 5.4 110 58-179 316-426 (427)
55 COG2897 SseA Rhodanese-related 98.6 1.5E-07 3.2E-12 84.8 9.0 108 61-180 158-281 (285)
56 COG2897 SseA Rhodanese-related 98.2 1E-05 2.2E-10 73.0 9.7 110 57-182 9-139 (285)
57 KOG3772 M-phase inducer phosph 97.9 1.4E-05 2.9E-10 73.0 5.2 105 54-170 151-274 (325)
58 KOG1529 Mercaptopyruvate sulfu 96.2 0.029 6.2E-07 50.7 8.5 51 127-183 85-138 (286)
59 KOG1529 Mercaptopyruvate sulfu 95.3 0.047 1E-06 49.3 6.2 87 74-170 171-274 (286)
60 COG5105 MIH1 Mitotic inducer, 95.1 0.084 1.8E-06 48.7 7.4 114 58-191 241-371 (427)
61 TIGR01244 conserved hypothetic 94.8 0.14 3.1E-06 40.8 7.3 88 59-153 13-112 (135)
62 COG2603 Predicted ATPase [Gene 93.8 0.039 8.4E-07 50.2 2.2 118 74-198 14-160 (334)
63 PF04273 DUF442: Putative phos 93.3 0.22 4.7E-06 38.8 5.4 84 58-148 12-106 (110)
64 cd00127 DSPc Dual specificity 84.0 5.9 0.00013 30.5 7.2 18 70-87 23-40 (139)
65 PF09992 DUF2233: Predicted pe 82.2 1.8 3.9E-05 35.3 3.8 38 127-164 100-141 (170)
66 PF13350 Y_phosphatase3: Tyros 82.1 5.2 0.00011 32.5 6.5 31 58-89 27-57 (164)
67 smart00195 DSPc Dual specifici 77.2 12 0.00026 29.0 6.9 75 72-154 24-107 (138)
68 PF01451 LMWPc: Low molecular 67.0 7.5 0.00016 30.4 3.5 38 130-170 1-42 (138)
69 PLN02727 NAD kinase 66.1 14 0.00031 38.8 6.1 85 58-149 266-364 (986)
70 COG3453 Uncharacterized protei 64.9 11 0.00025 30.1 4.1 80 55-145 10-104 (130)
71 cd05565 PTS_IIB_lactose PTS_II 63.9 6.8 0.00015 29.9 2.6 33 131-164 3-39 (99)
72 cd05564 PTS_IIB_chitobiose_lic 56.8 13 0.00028 27.9 3.0 33 131-164 2-38 (96)
73 TIGR02689 ars_reduc_gluta arse 55.7 21 0.00045 27.8 4.2 36 129-164 2-37 (126)
74 KOG0326 ATP-dependent RNA heli 55.4 10 0.00022 35.6 2.7 152 16-209 241-392 (459)
75 TIGR00853 pts-lac PTS system, 54.9 18 0.00039 27.2 3.6 34 130-164 5-42 (95)
76 PRK09590 celB cellobiose phosp 53.9 16 0.00034 28.1 3.1 24 131-154 4-31 (104)
77 COG2453 CDC14 Predicted protei 53.0 20 0.00044 29.8 3.9 28 127-154 104-134 (180)
78 PF04722 Ssu72: Ssu72-like pro 52.4 21 0.00046 30.7 4.0 29 130-159 4-32 (195)
79 PF05957 DUF883: Bacterial pro 52.0 36 0.00079 25.1 4.8 32 20-51 59-91 (94)
80 COG0062 Uncharacterized conser 49.9 39 0.00085 29.2 5.3 43 119-161 40-85 (203)
81 smart00226 LMWPc Low molecular 49.1 25 0.00054 27.5 3.7 35 130-164 1-35 (140)
82 KOG2585 Uncharacterized conser 49.0 20 0.00043 34.5 3.6 32 127-158 265-299 (453)
83 COG4822 CbiK Cobalamin biosynt 48.9 32 0.00069 30.5 4.6 102 57-159 56-173 (265)
84 PRK13530 arsenate reductase; P 47.1 39 0.00086 26.7 4.6 38 127-164 3-40 (133)
85 PF10805 DUF2730: Protein of u 44.3 32 0.0007 26.4 3.6 27 27-53 2-29 (106)
86 PF03853 YjeF_N: YjeF-related 44.0 70 0.0015 26.2 5.8 30 127-158 25-57 (169)
87 PRK10310 PTS system galactitol 42.9 34 0.00073 25.5 3.4 24 131-154 5-33 (94)
88 PF14606 Lipase_GDSL_3: GDSL-l 41.4 30 0.00066 29.2 3.2 87 55-161 41-144 (178)
89 PF13268 DUF4059: Protein of u 41.3 78 0.0017 23.0 4.8 42 22-63 1-42 (72)
90 PF02302 PTS_IIB: PTS system, 39.6 36 0.00078 24.3 3.0 24 131-154 2-30 (90)
91 PF05552 TM_helix: Conserved T 39.3 22 0.00048 23.6 1.7 34 19-53 4-37 (53)
92 cd00115 LMWPc Substituted upda 38.7 46 0.001 26.1 3.8 36 129-164 2-38 (141)
93 PRK10499 PTS system N,N'-diace 38.0 35 0.00075 26.1 2.9 24 131-154 6-33 (106)
94 PRK11391 etp phosphotyrosine-p 37.8 50 0.0011 26.5 3.9 35 129-164 4-38 (144)
95 TIGR03642 cas_csx13 CRISPR-ass 37.3 93 0.002 24.8 5.3 29 130-159 92-123 (124)
96 PRK10126 tyrosine phosphatase; 37.0 47 0.001 26.5 3.7 35 129-164 4-38 (147)
97 TIGR02691 arsC_pI258_fam arsen 36.9 53 0.0011 25.8 3.9 35 130-164 1-35 (129)
98 PRK13857 type IV secretion sys 36.3 1.2E+02 0.0025 24.2 5.5 22 15-36 51-72 (120)
99 COG2519 GCD14 tRNA(1-methylade 35.5 83 0.0018 28.2 5.2 43 115-159 177-219 (256)
100 PF10777 YlaC: Inner membrane 35.4 26 0.00057 29.0 1.9 65 27-94 29-95 (155)
101 TIGR03167 tRNA_sel_U_synt tRNA 35.3 1.2E+02 0.0025 27.8 6.3 35 59-94 136-172 (311)
102 PF03818 MadM: Malonate/sodium 34.8 87 0.0019 21.9 4.1 35 23-57 1-36 (60)
103 cd00133 PTS_IIB PTS_IIB: subun 34.2 48 0.001 22.5 2.9 19 132-150 3-22 (84)
104 PF01488 Shikimate_DH: Shikima 33.5 87 0.0019 24.5 4.6 30 130-160 14-43 (135)
105 PF02879 PGM_PMM_II: Phosphogl 33.4 1.9E+02 0.0042 21.1 7.1 62 128-202 22-83 (104)
106 PHA02657 hypothetical protein; 33.1 56 0.0012 24.6 3.1 23 2-24 4-29 (95)
107 PRK12361 hypothetical protein; 32.9 1.2E+02 0.0025 29.6 6.3 22 129-150 176-199 (547)
108 PRK11267 biopolymer transport 32.6 1.5E+02 0.0033 23.5 6.0 32 127-159 99-133 (141)
109 PF07755 DUF1611: Protein of u 31.4 71 0.0015 29.3 4.2 49 127-180 111-164 (301)
110 PF01102 Glycophorin_A: Glycop 30.6 66 0.0014 25.6 3.4 18 40-57 77-94 (122)
111 COG4844 Uncharacterized protei 29.6 33 0.00071 24.8 1.3 19 18-36 60-78 (78)
112 PF13399 LytR_C: LytR cell env 29.3 96 0.0021 22.3 3.9 26 130-155 5-32 (90)
113 PF06189 5-nucleotidase: 5'-nu 29.0 64 0.0014 29.1 3.4 59 105-164 159-224 (264)
114 KOG0029 Amine oxidase [Seconda 27.8 79 0.0017 30.9 4.1 68 128-202 15-91 (501)
115 TIGR00197 yjeF_nterm yjeF N-te 27.7 1.3E+02 0.0029 25.5 5.1 30 128-159 46-78 (205)
116 PF05706 CDKN3: Cyclin-depende 27.4 72 0.0016 26.9 3.2 85 65-152 63-159 (168)
117 KOG0685 Flavin-containing amin 27.2 91 0.002 30.6 4.3 35 127-162 20-54 (498)
118 PF04583 Baculo_p74: Baculovir 27.1 92 0.002 27.8 4.0 39 16-57 5-44 (249)
119 KOG2424 Protein involved in tr 26.8 78 0.0017 27.1 3.4 30 129-159 7-36 (195)
120 PF13950 Epimerase_Csub: UDP-g 26.5 69 0.0015 22.1 2.6 20 16-35 41-60 (62)
121 COG0394 Wzb Protein-tyrosine-p 26.3 1E+02 0.0022 24.7 3.9 37 128-164 3-39 (139)
122 PF12273 RCR: Chitin synthesis 26.0 48 0.001 26.0 1.9 6 34-39 2-7 (130)
123 PF02590 SPOUT_MTase: Predicte 25.8 1.4E+02 0.003 24.5 4.6 45 118-164 59-108 (155)
124 PRK13940 glutamyl-tRNA reducta 25.7 1.2E+02 0.0026 28.9 4.8 30 129-159 182-211 (414)
125 KOG1093 Predicted protein kina 25.4 19 0.00042 36.0 -0.6 93 59-170 622-719 (725)
126 COG1077 MreB Actin-like ATPase 25.3 1E+02 0.0022 28.8 4.0 48 127-180 100-150 (342)
127 PRK11024 colicin uptake protei 25.2 2E+02 0.0044 22.7 5.5 18 141-158 119-136 (141)
128 PTZ00393 protein tyrosine phos 25.2 1.3E+02 0.0029 26.7 4.7 27 128-154 170-198 (241)
129 PRK00676 hemA glutamyl-tRNA re 25.1 1.4E+02 0.0031 27.7 5.1 31 128-159 174-204 (338)
130 PF06480 FtsH_ext: FtsH Extrac 24.9 51 0.0011 23.8 1.8 31 54-85 23-53 (110)
131 PRK07688 thiamine/molybdopteri 24.9 73 0.0016 29.4 3.2 32 57-89 275-311 (339)
132 PLN03050 pyridoxine (pyridoxam 24.7 1.2E+02 0.0026 26.8 4.3 26 128-154 61-89 (246)
133 PLN02918 pyridoxine (pyridoxam 24.3 1.5E+02 0.0032 29.5 5.3 26 128-154 136-164 (544)
134 cd02071 MM_CoA_mut_B12_BD meth 24.1 97 0.0021 23.8 3.3 50 129-178 52-104 (122)
135 PF08704 GCD14: tRNA methyltra 24.1 92 0.002 27.6 3.5 39 129-170 140-178 (247)
136 PF01972 SDH_sah: Serine dehyd 23.4 4.6E+02 0.01 23.9 7.8 25 127-151 90-117 (285)
137 PF07879 PHB_acc_N: PHB/PHA ac 22.1 96 0.0021 22.0 2.6 29 59-87 18-46 (64)
138 PF15086 UPF0542: Uncharacteri 21.9 3E+02 0.0065 20.0 5.1 22 17-38 2-23 (74)
139 TIGR00640 acid_CoA_mut_C methy 21.9 1.5E+02 0.0033 23.4 4.1 51 128-178 54-107 (132)
140 PF09623 Cas_NE0113: CRISPR-as 21.8 2E+02 0.0044 25.2 5.1 14 75-88 81-94 (224)
141 PRK10565 putative carbohydrate 21.6 1.7E+02 0.0036 28.7 5.0 27 127-154 60-89 (508)
142 PRK13664 hypothetical protein; 21.4 75 0.0016 22.2 1.8 26 27-53 1-26 (62)
143 KOG0333 U5 snRNP-like RNA heli 21.3 1.2E+02 0.0027 30.3 4.0 36 127-164 517-552 (673)
144 cd03409 Chelatase_Class_II Cla 21.0 3.1E+02 0.0067 19.6 5.4 42 117-160 24-66 (101)
145 cd05567 PTS_IIB_mannitol PTS_I 20.9 1.2E+02 0.0027 21.8 3.1 20 131-150 3-23 (87)
146 PRK12549 shikimate 5-dehydroge 20.6 2.7E+02 0.0058 24.8 5.9 46 114-160 113-158 (284)
147 PF05052 MerE: MerE protein; 20.5 2.1E+02 0.0046 20.8 4.1 14 26-39 44-57 (75)
148 PF03054 tRNA_Me_trans: tRNA m 20.5 1E+02 0.0022 28.9 3.2 24 130-154 3-26 (356)
149 PF13344 Hydrolase_6: Haloacid 20.4 2.5E+02 0.0055 20.8 4.8 37 113-154 20-57 (101)
150 PF00156 Pribosyltran: Phospho 20.2 2.2E+02 0.0048 21.1 4.6 32 127-158 88-121 (125)
151 KOG1717 Dual specificity phosp 20.2 2.5E+02 0.0055 25.8 5.4 34 60-95 5-38 (343)
152 cd00079 HELICc Helicase superf 20.2 3.4E+02 0.0073 19.7 5.6 36 127-164 28-63 (131)
153 TIGR02804 ExbD_2 TonB system t 20.0 4.1E+02 0.0088 20.3 6.9 65 75-158 50-117 (121)
154 TIGR00201 comF comF family pro 20.0 1.7E+02 0.0037 24.2 4.2 33 127-159 152-186 (190)
155 PF04343 DUF488: Protein of un 20.0 1E+02 0.0022 23.7 2.7 24 63-86 2-25 (122)
156 PF06936 Selenoprotein_S: Sele 20.0 39 0.00084 28.9 0.3 30 22-52 25-55 (190)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.75 E-value=4.2e-18 Score=128.99 Aligned_cols=98 Identities=26% Similarity=0.306 Sum_probs=70.9
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCCCcEEEEEcCC
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPINTVVCILDNF 137 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~~~vIvvcc~s 137 (229)
+.|++.++.+++ +++++++||||++.||+. |++ | |++++|+.+ ...+...+.+..+ ++++++| +||++
T Consensus 2 ~~is~~~l~~~~-~~~~~~iiDvR~~~e~~~-ghi--~----gA~~ip~~~--~~~~~~~~~~~~~~~~~~~iv-vyC~~ 70 (101)
T cd01518 2 TYLSPAEWNELL-EDPEVVLLDVRNDYEYDI-GHF--K----GAVNPDVDT--FREFPFWLDENLDLLKGKKVL-MYCTG 70 (101)
T ss_pred CcCCHHHHHHHH-cCCCEEEEEcCChhhhhc-CEe--c----cccCCCccc--HhHhHHHHHhhhhhcCCCEEE-EECCC
Confidence 468999999976 567789999999999984 333 2 466666543 1122222211111 3355655 56679
Q ss_pred ChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 138 DGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 138 G~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
|.||..|+..|+++||++||+|.||+. +|.
T Consensus 71 G~rs~~a~~~L~~~G~~~v~~l~GG~~---~W~ 100 (101)
T cd01518 71 GIRCEKASAYLKERGFKNVYQLKGGIL---KYL 100 (101)
T ss_pred chhHHHHHHHHHHhCCcceeeechhHH---HHh
Confidence 999999999999999999999999999 997
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.74 E-value=1.1e-17 Score=134.66 Aligned_cols=109 Identities=22% Similarity=0.376 Sum_probs=79.5
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCccccccc--ceeccccC------cchhHHHHHHhhCCCCCC
Q 039798 57 KCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSV--VQVEFVEG------DENGFLNNVLSNFADPIN 128 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kga--v~iP~~~~------~~~~f~~~l~~~~~d~~~ 128 (229)
.+..+++.++.+++. + +.++||||++.||.. |++. ++ +++|+... ...++..++.+.+ ++++
T Consensus 13 ~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghIp------gA~~iniP~~~~~~~~~l~~~~~~~~~~~~~-~~~~ 82 (136)
T PLN02160 13 EVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHCE------AAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL-NPAD 82 (136)
T ss_pred eeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCCC------CcceecccchhcCcccccCCHHHHHHHHhcc-CCCC
Confidence 367899999999763 3 468999999999984 3332 34 45565211 1123334443322 3355
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
++| +||++|.||..|+..|.+.||++||++.||+. +|+ .+|+|+...
T Consensus 83 ~Ii-vyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~---~W~---~~g~p~~~~ 129 (136)
T PLN02160 83 DIL-VGCQSGARSLKATTELVAAGYKKVRNKGGGYL---AWV---DHSFPINQE 129 (136)
T ss_pred cEE-EECCCcHHHHHHHHHHHHcCCCCeeecCCcHH---HHh---hCCCCcccc
Confidence 655 56679999999999999999999999999999 999 999998653
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.73 E-value=1.7e-17 Score=127.38 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=73.0
Q ss_pred CCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEc
Q 039798 56 SKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILD 135 (229)
Q Consensus 56 ~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc 135 (229)
...+.++++++.+++.+.++.++||||++.||.. |+ || |++++|+. .+...+.+...++++++| +||
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-gh--Ip----gainip~~-----~l~~~~~~l~~~~~~~iv-v~C 73 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRK-MT--IP----GSVSCPGA-----ELVLRVGELAPDPRTPIV-VNC 73 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-Cc--CC----CceeCCHH-----HHHHHHHhcCCCCCCeEE-EEC
Confidence 4567899999999774444678999999999984 32 33 56777763 232332222122355655 566
Q ss_pred CCChHHHHHHHHHHHcCCcc-eEEccCcccCccccH
Q 039798 136 NFDGNSLKAAELLYKNGFKE-AYAISGGVRGKKGWL 170 (229)
Q Consensus 136 ~sG~RS~~Aa~~L~k~Gf~~-Vy~L~GGi~g~~aW~ 170 (229)
++|.||..|+..|++.||++ +++|.|||. +|+
T Consensus 74 ~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~---~W~ 106 (109)
T cd01533 74 AGRTRSIIGAQSLINAGLPNPVAALRNGTQ---GWT 106 (109)
T ss_pred CCCchHHHHHHHHHHCCCCcceeEecCCHH---HHH
Confidence 79999999999999999998 999999999 999
No 4
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.71 E-value=3.5e-17 Score=123.56 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=68.4
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhH---HHHHHhhCCCCCCcEEEEEcCC
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGF---LNNVLSNFADPINTVVCILDNF 137 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f---~~~l~~~~~d~~~~vIvvcc~s 137 (229)
|+++++.+++.+.+++++||||+++||+. |++ | |++++|+.+.. ..+ ..+....+ ++++++|+ ||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi--~----ga~~ip~~~~~-~~~~~~~~~~~~~~-~~~~~ivv-~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKI--D----GENNTPYFDPY-FDFLEIEEDILDQL-PDDQEVTV-ICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-ccc--C----CCcccccccch-HHHHHhhHHHHhhC-CCCCeEEE-EcCC
Confidence 68899999776556789999999999984 222 2 35555553311 111 01222334 34566665 5569
Q ss_pred ChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 138 DGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 138 G~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
|.||..|+..|++.||+ +++|.|||. +|+
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~~---~W~ 99 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGMK---AWS 99 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcHH---hhc
Confidence 99999999999999998 999999999 997
No 5
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=5.6e-17 Score=129.09 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=83.7
Q ss_pred CCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceecccc------CcchhHHHHHHhhCCCCCCc
Q 039798 56 SKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVE------GDENGFLNNVLSNFADPINT 129 (229)
Q Consensus 56 ~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~------~~~~~f~~~l~~~~~d~~~~ 129 (229)
+....++..++..++ +.++.++||||+|+||++.|. | .++||||.. .++++|.+++-...++.++.
T Consensus 20 ~~~~sv~~~qvk~L~-~~~~~~llDVRepeEfk~gh~---~----~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~e 91 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLL-QHPDVVLLDVREPEEFKQGHI---P----ASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKE 91 (136)
T ss_pred CCcEEEEHHHHHHHh-cCCCEEEEeecCHHHhhccCC---c----ceEeccccccccccccCCHHHHHHhcccCCCCCCc
Confidence 556889999999966 677799999999999996333 2 366677632 23567777763222223446
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCC
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPP 179 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl 179 (229)
+|+ +|++|.||..|.+.|..+||++|.++.||+. +|. +.++|.
T Consensus 92 iIf-~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~---~W~---~k~~~~ 134 (136)
T KOG1530|consen 92 IIF-GCASGVRSLKATKILVSAGYKNVGNYPGSYL---AWV---DKGGPK 134 (136)
T ss_pred EEE-EeccCcchhHHHHHHHHcCcccccccCccHH---HHH---HccCCC
Confidence 665 5569999999999999999999999999999 999 888874
No 6
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.70 E-value=5.8e-17 Score=124.24 Aligned_cols=103 Identities=24% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcC
Q 039798 57 KCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDN 136 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~ 136 (229)
+++.++++++.+++ ++.++++||||+++||+. |+ || +++++|+. .+...+ ..+ ++++++++|| .
T Consensus 3 ~~~~is~~el~~~l-~~~~~~ivDvR~~~e~~~-gh--i~----gA~~ip~~-----~l~~~~-~~~-~~~~~ivv~c-~ 66 (108)
T PRK00162 3 QFECINVEQAHQKL-QEGGAVLVDIRDPQSFAM-GH--AP----GAFHLTND-----SLGAFM-RQA-DFDTPVMVMC-Y 66 (108)
T ss_pred CccccCHHHHHHHH-HcCCCEEEEcCCHHHHhc-CC--CC----CCeECCHH-----HHHHHH-Hhc-CCCCCEEEEe-C
Confidence 56889999999976 455689999999999984 32 33 56666653 232222 233 3466666655 5
Q ss_pred CChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCee
Q 039798 137 FDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAV 181 (229)
Q Consensus 137 sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~ 181 (229)
+|.||..++..|++.||+++++|.||+. +|+ ..++|++.
T Consensus 67 ~g~~s~~a~~~L~~~G~~~v~~l~GG~~---~w~---~~~~~~~~ 105 (108)
T PRK00162 67 HGNSSQGAAQYLLQQGFDVVYSIDGGFE---AWR---RTFPAEVA 105 (108)
T ss_pred CCCCHHHHHHHHHHCCchheEEecCCHH---HHH---hcCCCccC
Confidence 9999999999999999999999999999 999 99999763
No 7
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.67 E-value=1.6e-16 Score=119.15 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred cCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCCh
Q 039798 61 ISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDG 139 (229)
Q Consensus 61 Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~ 139 (229)
||+.++.+++.+. ++.++||||+++||+. |++. |++++|+. .+........+.+++++| +||.+|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghip------ga~~ip~~-----~l~~~~~~~~~~~~~~iv-~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHLP------GFRHTPGG-----QLVQETDHFAPVRGARIV-LADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCC------CcEeCCHH-----HHHHHHHHhcccCCCeEE-EECCCCC
Confidence 6889999977543 3578999999999984 3322 46666653 222222111112245555 5666999
Q ss_pred HHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 140 NSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 140 RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
||..++..|+..||+ |++|.||+. +|+
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~---~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLA---AAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHH---Hhc
Confidence 999999999999999 999999999 997
No 8
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.67 E-value=2.1e-16 Score=118.88 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=73.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCC
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFD 138 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG 138 (229)
..|+++++.+++. +. .++||+|+++||.. |++ | |++++|+.+ +..... .+ ++++++|+ ||++|
T Consensus 2 ~~i~~~el~~~~~-~~-~~liDvR~~~e~~~-~hi--~----ga~~ip~~~-----~~~~~~-~~-~~~~~iv~-~c~~g 64 (99)
T cd01527 2 TTISPNDACELLA-QG-AVLVDIREPDEYLR-ERI--P----GARLVPLSQ-----LESEGL-PL-VGANAIIF-HCRSG 64 (99)
T ss_pred CccCHHHHHHHHH-CC-CEEEECCCHHHHHh-CcC--C----CCEECChhH-----hccccc-CC-CCCCcEEE-EeCCC
Confidence 4689999999763 33 89999999999984 322 2 566666533 111111 12 33556665 56699
Q ss_pred hHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCC
Q 039798 139 GNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPP 179 (229)
Q Consensus 139 ~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl 179 (229)
.||..++..|.+.||+++++|.||+. +|+ .+++|+
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~~---~W~---~~~~~~ 99 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGLD---AWK---AAGLPV 99 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCHH---HHH---HCcCCC
Confidence 99999999999999999999999999 999 888884
No 9
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.66 E-value=2.6e-16 Score=123.47 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHH-----hhCCCCCCcE
Q 039798 56 SKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVL-----SNFADPINTV 130 (229)
Q Consensus 56 ~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~-----~~~~d~~~~v 130 (229)
.....|+++++.+++.+.+++++||||+++||.. |++ | |++++|+.+. ......+. ....++++++
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hI--p----gai~ip~~~~--~~~~~~~~~~~~~~~~~~~~~~i 75 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRL--P----EAINIPLSEL--LSKAAELKSLQELPLDNDKDSPI 75 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccC--C----CCeEccHHHH--hhhhhhhhhhhhcccccCCCCcE
Confidence 4567899999999774446789999999999984 222 2 4666665331 11111110 1111346666
Q ss_pred EEEEcCCChHHHHHHHHHHHcCC-cceEEccCcccCccccHhhhhcCCC
Q 039798 131 VCILDNFDGNSLKAAELLYKNGF-KEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 131 Ivvcc~sG~RS~~Aa~~L~k~Gf-~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
|+ ||++|.||..+++.|++.|| ++++.+.|||. +|+......+|
T Consensus 76 vv-~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~---~W~~~~~~~~~ 120 (122)
T cd01526 76 YV-VCRRGNDSQTAVRKLKELGLERFVRDIIGGLK---AWADKVDPTFP 120 (122)
T ss_pred EE-ECCCCCcHHHHHHHHHHcCCccceeeecchHH---HHHHHhCccCC
Confidence 55 56699999999999999999 79999999999 99944444444
No 10
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.66 E-value=6.4e-16 Score=120.82 Aligned_cols=98 Identities=26% Similarity=0.389 Sum_probs=71.7
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhh-hcCCCCCcccccccceeccccCc----chhHHHHHHhhCCCCCCcEEEEEc
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMV-SLGSPNLKSLKKSVVQVEFVEGD----ENGFLNNVLSNFADPINTVVCILD 135 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~-i~Gainip~~~kgav~iP~~~~~----~~~f~~~l~~~~~d~~~~vIvvcc 135 (229)
||+.++.+++.+.++.++||||++.||+ . | +|| +++++|+.+.. ...|...+.... ++++++ ++||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-g--hIp----gA~~ip~~~~~~~~~~~~~~~~l~~~~-~~~~~i-vv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-G--GVP----DAVHVAWQVYPDMEINPNFLAELEEKV-GKDRPV-LLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-c--CCC----CceecchhhccccccCHHHHHHHHhhC-CCCCeE-EEEc
Confidence 6889999977554678999999999998 4 3 233 46777764311 123444443333 335555 5577
Q ss_pred CCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 136 NFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 136 ~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++|.||..++..|++.||++++++.|||. +|+
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~---~~~ 103 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFE---GDL 103 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCcee---cCC
Confidence 79999999999999999999999999999 664
No 11
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.65 E-value=5.4e-16 Score=128.45 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=80.5
Q ss_pred hhCCCcccCHHHHHHHHhCCCCcEEEeecChh----hhhhcCC-------CCCcccccccceecccc---Cc---chhHH
Q 039798 54 YLSKCKFISAIDAFQKLRNDPNAQLLDIRNKK----TMVSLGS-------PNLKSLKKSVVQVEFVE---GD---ENGFL 116 (229)
Q Consensus 54 ~~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~----Ef~i~Ga-------inip~~~kgav~iP~~~---~~---~~~f~ 116 (229)
.++++..|+++++.+++ ++++.+|||||+++ ||.. |. -+|| |++++|+.. .. .+.|.
T Consensus 31 ~~~~~~~vs~~el~~~l-~~~~~~lIDVR~~~~~~~e~~~-G~~~~~~~~~HIP----GAv~ip~~~~~~l~~~~~~~~~ 104 (162)
T TIGR03865 31 TLKGARVLDTEAAQALL-ARGPVALIDVYPRPPKPKNLLE-GTVWRDEPRLNIP----GSLWLPNTGYGNLAPAWQAYFR 104 (162)
T ss_pred ccCCccccCHHHHHHHH-hCCCcEEEECCCCccccccccc-cceeccccCCCCC----CcEEecccCCCCCCCchhHHHH
Confidence 34678999999999977 56678999999976 4432 21 1566 677777522 11 11233
Q ss_pred HHHHhhCC-CCCCcEEEEEcCCCh-HHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCC
Q 039798 117 NNVLSNFA-DPINTVVCILDNFDG-NSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPP 179 (229)
Q Consensus 117 ~~l~~~~~-d~~~~vIvvcc~sG~-RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl 179 (229)
..+.+... ++++++|+|| ++|. ||..++..|++.||++||+|.||+. +|+ .+|+|+
T Consensus 105 ~~l~~~~~~~~d~~IVvYC-~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~---aW~---~aG~Pv 162 (162)
T TIGR03865 105 RGLERATGGDKDRPLVFYC-LADCWMSWNAAKRALAYGYSNVYWYPDGTD---GWQ---AAGLPL 162 (162)
T ss_pred HHHHHhcCCCCCCEEEEEE-CCCCHHHHHHHHHHHhcCCcceEEecCCHH---HHH---HcCCCC
Confidence 33322111 3467777655 5886 8999999999999999999999999 999 999995
No 12
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.62 E-value=1.2e-15 Score=120.29 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=68.9
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhh---C-CCCCCc
Q 039798 59 KFISAIDAFQKLRND-----PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSN---F-ADPINT 129 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~-----~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~---~-~d~~~~ 129 (229)
..||++++.+++.++ +++++||||++.||+. |++ | +++++|+.+ .+...+.+. . .+++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI--~----gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHI--K----GAVNLSTKD----ELEEFFLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcC--C----CCEeCCcHH----HHHHHHHHhhcccccCCCCE
Confidence 469999999987543 4689999999999984 333 2 466666531 222222211 0 133555
Q ss_pred EEEEEcC-CChHHHHHHHHHHHc------------CCcceEEccCcccCccccH
Q 039798 130 VVCILDN-FDGNSLKAAELLYKN------------GFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 130 vIvvcc~-sG~RS~~Aa~~L~k~------------Gf~~Vy~L~GGi~g~~aW~ 170 (229)
+|+ ||. +|.||..|+..|++. ||.+||+|+|||. +|.
T Consensus 71 vv~-yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~---~f~ 120 (121)
T cd01530 71 LIF-HCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK---NFF 120 (121)
T ss_pred EEE-ECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH---hhc
Confidence 555 564 999999999999985 9999999999999 885
No 13
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.62 E-value=1.6e-15 Score=112.87 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=70.7
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhc-CCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCCh
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSL-GSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDG 139 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~-Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~ 139 (229)
|++.++.+++.+..++++||||++.||+.. |++ | +++++|+.+ +.+ ....+ ++++++|++ |++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi--~----ga~~ip~~~-----~~~-~~~~~-~~~~~ivv~-c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHI--P----GAIHLDEDS-----LDD-WLGDL-DRDRPVVVY-CYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCC--C----CCeeCCHHH-----HHH-HHhhc-CCCCCEEEE-eCCCC
Confidence 788999987744467899999999999741 433 3 678888643 222 22334 346676665 55999
Q ss_pred HHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 140 NSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 140 RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
||..++..|++.||+++++|.||+. +|+
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~~---~w~ 95 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGFE---AWR 95 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCHH---Hhc
Confidence 9999999999999999999999999 997
No 14
>PRK01415 hypothetical protein; Validated
Probab=99.61 E-value=1.8e-15 Score=133.27 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccC-cchhHHHHHHhhCCCCCCcEEEEEc
Q 039798 57 KCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEG-DENGFLNNVLSNFADPINTVVCILD 135 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~-~~~~f~~~l~~~~~d~~~~vIvvcc 135 (229)
..+.|+|.++.+++ +++++++||||++.||++ |++. +++++|.... +.+.+..+..+. +++++++ +||
T Consensus 110 ~g~~i~p~e~~~ll-~~~~~vvIDVRn~~E~~~-Ghi~------gAinip~~~f~e~~~~~~~~~~~--~k~k~Iv-~yC 178 (247)
T PRK01415 110 KGEYIEPKDWDEFI-TKQDVIVIDTRNDYEVEV-GTFK------SAINPNTKTFKQFPAWVQQNQEL--LKGKKIA-MVC 178 (247)
T ss_pred CccccCHHHHHHHH-hCCCcEEEECCCHHHHhc-CCcC------CCCCCChHHHhhhHHHHhhhhhh--cCCCeEE-EEC
Confidence 35789999999976 677899999999999994 3332 3444553220 011112222222 3355655 566
Q ss_pred CCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 136 NFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 136 ~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++|.||.+|+..|+++||++||+|.|||. +|.
T Consensus 179 tgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~---~w~ 210 (247)
T PRK01415 179 TGGIRCEKSTSLLKSIGYDEVYHLKGGIL---QYL 210 (247)
T ss_pred CCChHHHHHHHHHHHcCCCcEEEechHHH---HHH
Confidence 79999999999999999999999999999 998
No 15
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.60 E-value=3.7e-15 Score=112.80 Aligned_cols=96 Identities=22% Similarity=0.411 Sum_probs=70.1
Q ss_pred ccCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCC
Q 039798 60 FISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFD 138 (229)
Q Consensus 60 ~Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG 138 (229)
.|++.++.+++... +++++||||+++||.. + +|| |++++|+.+ ...+...+. .. ++++++|+ ||++|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~--hI~----ga~~ip~~~--~~~~~~~~~-~~-~~~~~vv~-~c~~g 68 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEI-A--FLP----GFLHLPMSE--IPERSKELD-SD-NPDKDIVV-LCHHG 68 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhc-C--cCC----CCEecCHHH--HHHHHHHhc-cc-CCCCeEEE-EeCCC
Confidence 37899999977443 3689999999999984 2 344 577777643 122222321 11 23556655 55699
Q ss_pred hHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 139 GNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 139 ~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
.||..++..|.+.||+++++|.||+. +|+
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~~---~w~ 97 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGID---AWS 97 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCHH---HHh
Confidence 99999999999999999999999999 998
No 16
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.60 E-value=4.6e-15 Score=117.56 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=67.0
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCc----------------------------c
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGD----------------------------E 112 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~----------------------------~ 112 (229)
||++++.+++ + ++.++||||++.||+. |++ | |++++|+.... .
T Consensus 1 ~s~~el~~~l-~-~~~~iiDvR~~~e~~~-ghI--p----gAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALR-K-ADGPLIDVRSPKEFFE-GHL--P----GAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHH-h-cCCEEEECCCHHHhcc-CcC--C----CcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 6889999866 4 5789999999999984 322 2 46666663211 0
Q ss_pred hhHHHHHH-hhCCCCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 113 NGFLNNVL-SNFADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 113 ~~f~~~l~-~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
+.+...+. ..+ ++++++|+||.++|.||..++..|+.+|| +|++|.||+. +|+
T Consensus 72 ~~~~~~~~~~~i-~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~---aw~ 125 (128)
T cd01520 72 KRILNEAWEARL-ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK---AYR 125 (128)
T ss_pred HHHHHHHHHhcc-CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH---HHH
Confidence 11111211 123 34667666554478999999999999999 5999999999 998
No 17
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.9e-15 Score=114.52 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=66.8
Q ss_pred HhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHH
Q 039798 70 LRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLY 149 (229)
Q Consensus 70 l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~ 149 (229)
+.+.+++++||||++.||+..+.++ .+.++|..+ ...+.... . . ++++++|+ +|++|.||..|++.|+
T Consensus 15 ~~~~~~~~liDvR~~~e~~~~~i~~------~~~~ip~~~--~~~~~~~~-~-~-~~~~~ivv-~C~~G~rS~~aa~~L~ 82 (110)
T COG0607 15 LLAGEDAVLLDVREPEEYERGHIPG------AAINIPLSE--LKAAENLL-E-L-PDDDPIVV-YCASGVRSAAAAAALK 82 (110)
T ss_pred hhccCCCEEEeccChhHhhhcCCCc------ceeeeeccc--chhhhccc-c-c-CCCCeEEE-EeCCCCChHHHHHHHH
Confidence 5466789999999999999544333 144555433 11111111 0 1 23556665 5569999999999999
Q ss_pred HcCCcceEEccCcccCccccHhhhhcCCCCe
Q 039798 150 KNGFKEAYAISGGVRGKKGWLAIQETLLPPA 180 (229)
Q Consensus 150 k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~ 180 (229)
++||++++++.|||. +|+ .+++|.+
T Consensus 83 ~~G~~~~~~l~gG~~---~w~---~~~~~~~ 107 (110)
T COG0607 83 LAGFTNVYNLDGGID---AWK---GAGLPLV 107 (110)
T ss_pred HcCCccccccCCcHH---HHH---hcCCCcc
Confidence 999999999999999 999 9999965
No 18
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.59 E-value=5.3e-15 Score=113.96 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=74.0
Q ss_pred CcccCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcC
Q 039798 58 CKFISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDN 136 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~ 136 (229)
-..++++++.+++.+. ++.++||||++.||.. | +|| +++++|+.. +.......+ ++++++|+|| .
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-g--hIp----gA~~ip~~~-----l~~~~~~~i-~~~~~vvvyc-~ 72 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-G--HVP----GAINLPHRE-----ICENATAKL-DKEKLFVVYC-D 72 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-C--CCC----CCEeCCHHH-----hhhHhhhcC-CCCCeEEEEE-C
Confidence 3679999999988654 5689999999999984 3 233 466666533 221111233 3466766655 4
Q ss_pred CC--hHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCC
Q 039798 137 FD--GNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPP 179 (229)
Q Consensus 137 sG--~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl 179 (229)
+| .+|..++..|++.||+ ++.|.||+. +|+ .+|+|+
T Consensus 73 ~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~---~W~---~~g~~~ 110 (110)
T cd01521 73 GPGCNGATKAALKLAELGFP-VKEMIGGLD---WWK---REGYAT 110 (110)
T ss_pred CCCCchHHHHHHHHHHcCCe-EEEecCCHH---HHH---HCCCCC
Confidence 76 4899999999999995 999999999 999 899984
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.59 E-value=4.4e-15 Score=112.54 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred CHHHHHHHHhC-CCCcEEEeecChhhhhhcCCCCCcccccccceeccccCc------chhHHHHHHhhCCCCCCcEEEEE
Q 039798 62 SAIDAFQKLRN-DPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGD------ENGFLNNVLSNFADPINTVVCIL 134 (229)
Q Consensus 62 s~~ea~~~l~~-~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~------~~~f~~~l~~~~~d~~~~vIvvc 134 (229)
|++++.+++ + .++++|||||++.||.. |++ | +++++|+.+.. ..+|.+.+.....++++++| +|
T Consensus 2 ~~~~~~~~l-~~~~~~~iiDvR~~~e~~~-ghI--p----gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv-v~ 72 (106)
T cd01519 2 SFEEVKNLP-NPHPNKVLIDVREPEELKT-GKI--P----GAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI-FY 72 (106)
T ss_pred cHHHHHHhc-CCCCCEEEEECCCHHHHhc-CcC--C----CcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE-EE
Confidence 577888855 5 56799999999999983 333 3 56677764411 11222222111112355555 56
Q ss_pred cCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 135 DNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 135 c~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
|.+|.||..++..|...||++|+++.||+. +|.
T Consensus 73 c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~---~W~ 105 (106)
T cd01519 73 CKAGVRSKAAAELARSLGYENVGNYPGSWL---DWA 105 (106)
T ss_pred CCCcHHHHHHHHHHHHcCCccceecCCcHH---HHc
Confidence 669999999999999999999999999999 996
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.57 E-value=7.9e-15 Score=110.25 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=67.8
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHH---H-HhhCCCCCCcEEEEEcC
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNN---V-LSNFADPINTVVCILDN 136 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~---l-~~~~~d~~~~vIvvcc~ 136 (229)
|+++++.+++ ++++.++||||++.||...|++ | |++++|+... ..+... + ...+ ++++++|+ ||.
T Consensus 1 is~~el~~~~-~~~~~~iiDvR~~~~~~~~ghI--p----ga~~ip~~~~--~~~~~~~~~~~~~~~-~~~~~ivv-~c~ 69 (103)
T cd01447 1 LSPEDARALL-GSPGVLLVDVRDPRELERTGMI--P----GAFHAPRGML--EFWADPDSPYHKPAF-AEDKPFVF-YCA 69 (103)
T ss_pred CCHHHHHHHH-hCCCeEEEECCCHHHHHhcCCC--C----CcEEcccchh--hhhcCccccccccCC-CCCCeEEE-EcC
Confidence 5788998866 5567899999999998533443 3 5677775331 111110 0 0012 33556655 556
Q ss_pred CChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 137 FDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 137 sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
+|.||..++..|...||++|+.|.||+. +|.
T Consensus 70 ~g~~s~~~~~~l~~~G~~~v~~l~Gg~~---~w~ 100 (103)
T cd01447 70 SGWRSALAGKTLQDMGLKPVYNIEGGFK---DWK 100 (103)
T ss_pred CCCcHHHHHHHHHHcChHHhEeecCcHH---HHh
Confidence 8999999999999999999999999999 998
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.56 E-value=9.3e-15 Score=110.72 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=66.6
Q ss_pred cCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcc--hh---H--HHHHHhhCCCCCCcEEE
Q 039798 61 ISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDE--NG---F--LNNVLSNFADPINTVVC 132 (229)
Q Consensus 61 Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~--~~---f--~~~l~~~~~d~~~~vIv 132 (229)
||++++.+++.+. ++.++||||++.||+. |++ | |++++|+..... .. + ...+ .. ..++++|+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghI--p----gA~~ip~~~~~~~~~~~~~~~~~~~~-~~--~~~~~vv~ 70 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHI--E----GSINIPFSSVFLKEGELEQLPTVPRL-EN--YKGKIIVI 70 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-Ccc--C----CCEeCCHHHhcccccccccccchHHH-Hh--hcCCeEEE
Confidence 6889999977543 3679999999999984 322 2 466666532100 00 0 1111 11 12455555
Q ss_pred EEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 133 ILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 133 vcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
||.+|.||..++..|+..||++||+|.||+. +|+
T Consensus 71 -~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~---a~~ 104 (105)
T cd01525 71 -VSHSHKHAALFAAFLVKCGVPRVCILDGGIN---ALK 104 (105)
T ss_pred -EeCCCccHHHHHHHHHHcCCCCEEEEeCcHH---Hhc
Confidence 5569999999999999999999999999999 997
No 22
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.56 E-value=9.5e-15 Score=129.43 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=71.5
Q ss_pred CcccCHHHHHHHHhCC-----CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCCCcEE
Q 039798 58 CKFISAIDAFQKLRND-----PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPINTVV 131 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~-----~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~~~vI 131 (229)
...|++.++.+++.+. +++++||||++.||++ |++. |++++|+.+ ..++...+.+... .++++++
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~--f~~~~~~l~~~~~~~kdk~Iv 179 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDK--FTEFPEALAAHRADLAGKTVV 179 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhH--hhhhHHHHHhhhhhcCCCeEE
Confidence 5789999999877442 3479999999999984 4332 466666533 1222222211110 1255655
Q ss_pred EEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 132 CILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 132 vvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++|++|.||.+|+..|++.||++||+|.|||. +|.
T Consensus 180 -vyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~---~w~ 214 (257)
T PRK05320 180 -SFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL---KYF 214 (257)
T ss_pred -EECCCCHHHHHHHHHHHHcCCcceEEeccCHH---HHH
Confidence 56669999999999999999999999999999 998
No 23
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.55 E-value=1.3e-14 Score=108.58 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=59.3
Q ss_pred HhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChH--HHHHHHH
Q 039798 70 LRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGN--SLKAAEL 147 (229)
Q Consensus 70 l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~R--S~~Aa~~ 147 (229)
+.+++++++||||+++||.. +++ | +++++|+. .+.......++++++++|+ ||.+|.| |..|+..
T Consensus 5 ~~~~~~~~liDvR~~~e~~~-~hi--~----ga~~ip~~-----~~~~~~~~~~~~~~~~ivl-~c~~G~~~~s~~aa~~ 71 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQ-SHP--L----WAANLPLS-----RLELDAWVRIPRRDTPIVV-YGEGGGEDLAPRAARR 71 (92)
T ss_pred hhcCCCeEEEECCCHHHHhh-CCc--c----cCeeCCHH-----HHHhhhHhhCCCCCCeEEE-EeCCCCchHHHHHHHH
Confidence 33567889999999999984 322 2 45566642 2211111222223556655 5568877 6899999
Q ss_pred HHHcCCcceEEccCcccCccccH
Q 039798 148 LYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 148 L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
|++.||++|++|.||+. +|+
T Consensus 72 L~~~G~~~v~~l~GG~~---~W~ 91 (92)
T cd01532 72 LSELGYTDVALLEGGLQ---GWR 91 (92)
T ss_pred HHHcCccCEEEccCCHH---HHc
Confidence 99999999999999999 997
No 24
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.53 E-value=3.1e-14 Score=105.63 Aligned_cols=89 Identities=15% Similarity=0.286 Sum_probs=65.9
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChH
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGN 140 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~R 140 (229)
++|+++.+++ .++.++||+|+++||.. |+ +| +++++|+. .+...+ ..+ ++++++|+ ||.+|.+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~-~h--ip----gA~~ip~~-----~~~~~~-~~~-~~~~~vvl-~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEK-GH--IK----GAINIPLD-----ELRDRL-NEL-PKDKEIIV-YCAVGLR 63 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhc-CC--CC----CCEeCCHH-----HHHHHH-Hhc-CCCCcEEE-EcCCChh
Confidence 4688888855 45679999999999984 32 23 56677753 233322 233 23556665 5568999
Q ss_pred HHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 141 SLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 141 S~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
|..++..|++.|| ++++|.||+. +|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~~---~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGYK---TYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCHH---Hhc
Confidence 9999999999999 8999999999 997
No 25
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.53 E-value=3.3e-14 Score=115.69 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred HHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHH
Q 039798 66 AFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGNSLKAA 145 (229)
Q Consensus 66 a~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa 145 (229)
+.+++.++.+++|||||++.||+. |++ | |++++|. ..+...+ ..++ ++.++|++|. +|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHI--p----gAi~~~~-----~~l~~~l-~~l~-~~~~vVv~c~-~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHI--P----GAWWVLR-----AQLAQAL-EKLP-AAERYVLTCG-SSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCC--C----CceeCCH-----HHHHHHH-HhcC-CCCCEEEEeC-CChHHHHHH
Confidence 344454555689999999999983 222 2 3555442 2333333 3343 3567776565 899999999
Q ss_pred HHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 146 ELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 146 ~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
..|+..||++|++|.||+. +|+ .+|+|+...
T Consensus 67 ~~L~~~G~~~v~~L~GG~~---aW~---~~g~pl~~~ 97 (145)
T cd01535 67 ADLAALTVKPVFVLEGGTA---AWI---AAGLPVESG 97 (145)
T ss_pred HHHHHcCCcCeEEecCcHH---HHH---HCCCCcccC
Confidence 9999999999999999999 999 999998653
No 26
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.53 E-value=3.1e-14 Score=129.41 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=75.4
Q ss_pred CCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCCCcEEEEE
Q 039798 56 SKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPINTVVCIL 134 (229)
Q Consensus 56 ~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~~~vIvvc 134 (229)
.....++++++.+++ +++++++||||++.||++ |++. |++++|+.. ..++...+.+.+. .+++++| +|
T Consensus 109 ~~~~~is~~el~~~l-~~~~~vlIDVR~~~E~~~-GhI~------GAi~ip~~~--~~~~~~~l~~~~~~~kdk~Iv-vy 177 (314)
T PRK00142 109 NVGTYLKPKEVNELL-DDPDVVFIDMRNDYEYEI-GHFE------NAIEPDIET--FREFPPWVEENLDPLKDKKVV-MY 177 (314)
T ss_pred cCCcccCHHHHHHHh-cCCCeEEEECCCHHHHhc-CcCC------CCEeCCHHH--hhhhHHHHHHhcCCCCcCeEE-EE
Confidence 345789999999966 667899999999999985 4433 577777643 2223233322221 2355655 56
Q ss_pred cCCChHHHHHHHHHHHcCCcceEEccCcccCccccHh
Q 039798 135 DNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLA 171 (229)
Q Consensus 135 c~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~ 171 (229)
|++|.||..|+..|+++||++||+|.|||. +|..
T Consensus 178 C~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~---~w~~ 211 (314)
T PRK00142 178 CTGGIRCEKASAWMKHEGFKEVYQLEGGII---TYGE 211 (314)
T ss_pred CCCCcHHHHHHHHHHHcCCCcEEEecchHH---HHHH
Confidence 679999999999999999999999999999 9984
No 27
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.51 E-value=5.9e-14 Score=108.48 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=67.2
Q ss_pred cccCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCCCcEEEEEcC
Q 039798 59 KFISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPINTVVCILDN 136 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~~~vIvvcc~ 136 (229)
+.|+++++.+++.+. ++.++||||++ ||.. |+ +| +++++|+.+. .....++.+... ++++++|++|..
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~h--i~----gA~~ip~~~l--~~~~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GH--IK----GSWHYPSTRF--KAQLNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-Cc--CC----CCEecCHHHH--hhCHHHHHHHHhcCCCCeEEEEeec
Confidence 578999999977443 46789999999 9973 32 23 4666665431 111223322210 225566665533
Q ss_pred CChHHHHHHHHHHH--------cCCcceEEccCcccCccccH
Q 039798 137 FDGNSLKAAELLYK--------NGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 137 sG~RS~~Aa~~L~k--------~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
+|.||..|++.|.+ .||++|++|.||+. +|+
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~---~w~ 110 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN---AWE 110 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH---HHH
Confidence 77899999998865 49999999999999 998
No 28
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.51 E-value=4e-14 Score=109.55 Aligned_cols=98 Identities=20% Similarity=0.381 Sum_probs=63.9
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCCCcEEE
Q 039798 59 KFISAIDAFQKLRND-----PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPINTVVC 132 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~-----~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~~~vIv 132 (229)
+.|+++++.+++.+. ++.++||||++ ||.. |+ || +++++|+.. ......++.+.+. ++..++|
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-gh--ip----gAi~ip~~~--~~~~~~~~~~~~~~~~~~~iv- 70 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GH--IK----GSINLPAQS--CYQTLPQVYALFSLAGVKLAI- 70 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Cc--cc----CceecchhH--HHHHHHHHHHHhhhcCCCEEE-
Confidence 578999999977443 46889999999 9984 32 33 466666543 1121222222221 2234555
Q ss_pred EEcCC-ChHHHHHHHHHHH----cCC--cceEEccCcccCccccH
Q 039798 133 ILDNF-DGNSLKAAELLYK----NGF--KEAYAISGGVRGKKGWL 170 (229)
Q Consensus 133 vcc~s-G~RS~~Aa~~L~k----~Gf--~~Vy~L~GGi~g~~aW~ 170 (229)
++|.+ |.||..+++.|.+ .|| .++|+|.||+. +|+
T Consensus 71 ~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~---~w~ 112 (113)
T cd01443 71 FYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK---AWY 112 (113)
T ss_pred EECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh---hhc
Confidence 56655 6899888877554 465 78999999999 996
No 29
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.51 E-value=5.6e-14 Score=108.55 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=69.9
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhhc--------CCCCCcccccccceeccccCc-------chhHHHHHHhhCC-
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVSL--------GSPNLKSLKKSVVQVEFVEGD-------ENGFLNNVLSNFA- 124 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~--------Gainip~~~kgav~iP~~~~~-------~~~f~~~l~~~~~- 124 (229)
++++++.+.+ ++++.++||||++.||... ..-+|| |++++|+.... ..+...++.....
T Consensus 1 ~s~~~l~~~l-~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp----gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (118)
T cd01449 1 VTAEEVLANL-DSGDVQLVDARSPERFRGEVPEPRPGLRSGHIP----GAVNIPWTSLLDEDGTFKSPEELRALFAALGI 75 (118)
T ss_pred CCHHHHHHhc-CCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC----CCcccChHHhcCCCCCcCCHHHHHHHHHHcCC
Confidence 5788888865 5566899999999999631 012344 67777764311 1111222222222
Q ss_pred CCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 125 DPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 125 d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++++++|+ ||++|.||..++..|+..||++++.+.||+. +|+
T Consensus 76 ~~~~~iv~-yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~---~W~ 117 (118)
T cd01449 76 TPDKPVIV-YCGSGVTACVLLLALELLGYKNVRLYDGSWS---EWG 117 (118)
T ss_pred CCCCCEEE-ECCcHHHHHHHHHHHHHcCCCCeeeeCChHH---Hhc
Confidence 34667665 5568999999999999999999999999999 997
No 30
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.51 E-value=6.5e-14 Score=102.66 Aligned_cols=92 Identities=28% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcch-------hHHHHHHhhCCCCCCcEEEEEcCCChHHHHHH
Q 039798 73 DPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDEN-------GFLNNVLSNFADPINTVVCILDNFDGNSLKAA 145 (229)
Q Consensus 73 ~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~-------~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa 145 (229)
+++.+|||+|++.||.. +++ | +++++|+...... .+...+......+++++|++| .+|.+|..++
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi--~----ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c-~~g~~a~~~~ 73 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHI--P----GAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYC-RSGNRSAKAA 73 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCC--C----CceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEe-CCCcHHHHHH
Confidence 45789999999999983 222 2 4555554331100 111111111113356666555 7999999999
Q ss_pred HHHHHcCCcceEEccCcccCccccHhhhhcCCC
Q 039798 146 ELLYKNGFKEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 146 ~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
..|++.||++|++|.||+. +|+ ..++|
T Consensus 74 ~~l~~~G~~~v~~l~GG~~---~w~---~~~~~ 100 (100)
T smart00450 74 WLLRELGFKNVYLLDGGYK---EWS---AAGPP 100 (100)
T ss_pred HHHHHcCCCceEEecCCHH---HHH---hcCCC
Confidence 9999999999999999999 999 77654
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.50 E-value=5.8e-14 Score=130.14 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=78.0
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCC
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNF 137 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~s 137 (229)
++.|+++++.+++. .+.++||||+++||+. |+ || +++++|+.. +...+.....++++++|+ ||++
T Consensus 2 v~~is~~el~~~l~--~~~~ivDvR~~~e~~~-gh--Ip----gAi~ip~~~-----l~~~~~~~~~~~~~~Ivv-yC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA--QGAVLIDVREAHERAS-GQ--AE----GALRIPRGF-----LELRIETHLPDRDREIVL-ICAS 66 (376)
T ss_pred CceeCHHHHHHHHh--CCCEEEECCCHHHHhC-Cc--CC----CCEECCHHH-----HHHHHhhhcCCCCCeEEE-EcCC
Confidence 56799999999773 3589999999999984 33 33 567777532 222222222234566665 5569
Q ss_pred ChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 138 DGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 138 G~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
|.||..|+..|++.||++|++|.||+. +|+ .+++|++..
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~~---~W~---~~g~p~~~~ 105 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGFS---AWK---DAGLPLERP 105 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcHH---HHH---hcCCccccc
Confidence 999999999999999999999999999 999 899998644
No 32
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.50 E-value=1e-13 Score=108.03 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=66.6
Q ss_pred cCHHHHHHHHhCCCCcEEEeecCh-------hhhhhcCCCCCcccccccceeccccCc------------chhHHHHHHh
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNK-------KTMVSLGSPNLKSLKKSVVQVEFVEGD------------ENGFLNNVLS 121 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~-------~Ef~i~Gainip~~~kgav~iP~~~~~------------~~~f~~~l~~ 121 (229)
++++++.+++ ++++.++||+|++ +||+. |++ | +++++|+.+.. ..+|.+.+ .
T Consensus 2 i~~~~l~~~l-~~~~~~ivDvR~~~~~~~~~~~~~~-ghI--~----ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (122)
T cd01448 2 VSPDWLAEHL-DDPDVRILDARWYLPDRDGRKEYLE-GHI--P----GAVFFDLDEDLDDKSPGPHMLPSPEEFAELL-G 72 (122)
T ss_pred cCHHHHHHHh-CCCCeEEEEeecCCCCCchhhHHhh-CCC--C----CCEEcChhhccccCCCCCCCCCCHHHHHHHH-H
Confidence 6889999866 5567899999999 88873 222 2 35555543211 11222222 2
Q ss_pred hCC-CCCCcEEEEEcCC-ChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 122 NFA-DPINTVVCILDNF-DGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 122 ~~~-d~~~~vIvvcc~s-G~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
... ++++++|+ ||++ |.+|..++..|+..||++|++|.||+. +|+
T Consensus 73 ~~~~~~~~~vv~-~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~ 119 (122)
T cd01448 73 SLGISNDDTVVV-YDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ---AWK 119 (122)
T ss_pred HcCCCCCCEEEE-ECCCCCccHHHHHHHHHHcCCCCEEEecCCHH---HHH
Confidence 211 33556555 5657 589999999999999999999999999 998
No 33
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.48 E-value=1.1e-13 Score=104.59 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=67.1
Q ss_pred CHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccC----c---chhH---HHHHHhhCCCCCCcEE
Q 039798 62 SAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEG----D---ENGF---LNNVLSNFADPINTVV 131 (229)
Q Consensus 62 s~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~----~---~~~f---~~~l~~~~~d~~~~vI 131 (229)
||+|+.+++ ++++.+|||+|++.||.. |++. +++++|+... . ...+ ........ ++++++|
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv 71 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHIP------GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKI-DKDKDIV 71 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBET------TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGS-TTTSEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCCC------CCccccccccccccccccccccccccccccccc-cccccce
Confidence 689999977 778999999999999994 3332 4666766221 0 0111 11111222 3355666
Q ss_pred EEEcCCChHHHHHHHH-----HHHcCCcceEEccCcccCccccH
Q 039798 132 CILDNFDGNSLKAAEL-----LYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 132 vvcc~sG~RS~~Aa~~-----L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++| .+|.++..++.. |.+.||++|+.|.||+. +|+
T Consensus 72 ~yc-~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~---~w~ 111 (113)
T PF00581_consen 72 FYC-SSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE---AWK 111 (113)
T ss_dssp EEE-SSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH---HHH
T ss_pred eee-ecccccchhHHHHHHHHHHHcCCCCEEEecChHH---HHh
Confidence 545 699999888887 89999999999999999 998
No 34
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.48 E-value=1.3e-13 Score=128.69 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcC
Q 039798 57 KCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDN 136 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~ 136 (229)
....|+++++.+++.+.++.++||||+++||+. +++ | |++++|+.+... ...+ ..+ ++++++|++ |+
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghI--p----GAinip~~~l~~---~~~~-~~l-~~d~~iVvy-C~ 351 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHI--P----GAQLIPKSEILS---GEAL-AKL-PQDRTIVLY-CK 351 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCC--C----CCEEcChHHhcc---hhHH-hhC-CCCCcEEEE-cC
Confidence 456799999999775545678999999999984 333 3 577777643110 0122 233 346676654 56
Q ss_pred CChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCC
Q 039798 137 FDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 137 sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
+|.||..|+..|++.||++|++|.||+. +|++..+..+|
T Consensus 352 ~G~rS~~aa~~L~~~G~~~V~~L~GG~~---~W~~~~~~~~p 390 (392)
T PRK07878 352 TGVRSAEALAALKKAGFSDAVHLQGGVV---AWAKQVDPSLP 390 (392)
T ss_pred CChHHHHHHHHHHHcCCCcEEEecCcHH---HHHHhcCCCCC
Confidence 9999999999999999999999999999 99954444444
No 35
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.48 E-value=9e-14 Score=104.21 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCCcEEEeecChhhhhhcCCCCCcccccccceeccccCc-chhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHc
Q 039798 73 DPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGD-ENGFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKN 151 (229)
Q Consensus 73 ~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~-~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~ 151 (229)
++++++||||++.||+. |++ | |++++|+.... .....+.+ ... ++++++|+ ||.+|.+|..++..|++.
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hI--p----gA~~ip~~~~~~~~~~~~~~-~~~-~~~~~ivv-~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHL--P----GKRSIPGAALVLRSQELQAL-EAP-GRATRYVL-TCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCC--C----CcEeCCHHHhcCCHHHHHHh-hcC-CCCCCEEE-EeCChHHHHHHHHHHHHc
Confidence 45689999999999984 322 3 46666653211 11111111 222 33566665 555999999999999999
Q ss_pred CCcceEEccCcccCccccH
Q 039798 152 GFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 152 Gf~~Vy~L~GGi~g~~aW~ 170 (229)
||++|++|.|||. +|+
T Consensus 80 G~~~v~~l~GG~~---~W~ 95 (96)
T cd01529 80 GGKPVALLDGGTS---AWV 95 (96)
T ss_pred CCCCEEEeCCCHH---Hhc
Confidence 9999999999999 997
No 36
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.46 E-value=2e-13 Score=104.86 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHcC
Q 039798 73 DPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKNG 152 (229)
Q Consensus 73 ~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~G 152 (229)
.....+||||+++||.. |+ || |++++|+.+ +...+.+...++++++|+ ||++|.||..++..|++.|
T Consensus 16 ~~~~~lIDvR~~~ef~~-gh--Ip----gAinip~~~-----l~~~l~~~~~~~~~~vvl-yC~~G~rS~~aa~~L~~~G 82 (101)
T TIGR02981 16 FAAEHWIDVRIPEQYQQ-EH--IQ----GAINIPLKE-----IKEHIATAVPDKNDTVKL-YCNAGRQSGMAKDILLDMG 82 (101)
T ss_pred ccCCEEEECCCHHHHhc-CC--CC----CCEECCHHH-----HHHHHHHhCCCCCCeEEE-EeCCCHHHHHHHHHHHHcC
Confidence 34568999999999984 32 33 577777632 333332222233455555 5569999999999999999
Q ss_pred CcceEEccCcccCccccH
Q 039798 153 FKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 153 f~~Vy~L~GGi~g~~aW~ 170 (229)
|++++++ ||+. +|.
T Consensus 83 ~~~v~~~-GG~~---~~~ 96 (101)
T TIGR02981 83 YTHAENA-GGIK---DIA 96 (101)
T ss_pred CCeEEec-CCHH---Hhh
Confidence 9999986 9999 997
No 37
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.46 E-value=2.3e-13 Score=98.64 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=60.2
Q ss_pred HHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHH-HhhCCCCCCcEEEEEcCCChHHHHHH
Q 039798 67 FQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNV-LSNFADPINTVVCILDNFDGNSLKAA 145 (229)
Q Consensus 67 ~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l-~~~~~d~~~~vIvvcc~sG~RS~~Aa 145 (229)
.+++ +.++..+||+|++.||+. +++ | +++++|+.. +.... .... +++.++|++| ..|.+|..++
T Consensus 3 ~~~~-~~~~~~iiD~R~~~~~~~-~~i--~----ga~~~~~~~-----~~~~~~~~~~-~~~~~vv~~c-~~~~~a~~~~ 67 (89)
T cd00158 3 KELL-DDEDAVLLDVREPEEYAA-GHI--P----GAINIPLSE-----LEERAALLEL-DKDKPIVVYC-RSGNRSARAA 67 (89)
T ss_pred HHHh-cCCCeEEEECCCHHHHhc-ccc--C----CCEecchHH-----HhhHHHhhcc-CCCCeEEEEe-CCCchHHHHH
Confidence 3434 467889999999999984 222 2 455666532 11111 1111 3356666555 4899999999
Q ss_pred HHHHHcCCcceEEccCcccCccccH
Q 039798 146 ELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 146 ~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
..|++.||++++.|.||+. +|+
T Consensus 68 ~~l~~~G~~~v~~l~gG~~---~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGML---AWK 89 (89)
T ss_pred HHHHHhCcccEEEecCChh---hcC
Confidence 9999999999999999999 995
No 38
>PRK07411 hypothetical protein; Validated
Probab=99.44 E-value=3.1e-13 Score=126.08 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCcccCHHHHHHHHhCCC-CcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEc
Q 039798 57 KCKFISAIDAFQKLRNDP-NAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILD 135 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~-~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc 135 (229)
..+.|+++++.+++.... +.++||||+++||+. |++ | |++++||.+.......+++.+. ++++++| +||
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghI--p----GAiniP~~~l~~~~~~~~l~~l--~~d~~IV-vyC 349 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARI--P----GSVLVPLPDIENGPGVEKVKEL--LNGHRLI-AHC 349 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcC--C----CCEEccHHHhhcccchHHHhhc--CCCCeEE-EEC
Confidence 356799999999775432 578999999999984 433 3 5777776442111112233222 2355655 466
Q ss_pred CCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCC
Q 039798 136 NFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 136 ~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
++|.||..|+..|+++||+ ++++.||+. +|+......+|
T Consensus 350 ~~G~RS~~aa~~L~~~G~~-~~~l~GG~~---~W~~~~~p~~p 388 (390)
T PRK07411 350 KMGGRSAKALGILKEAGIE-GTNVKGGIT---AWSREVDPSVP 388 (390)
T ss_pred CCCHHHHHHHHHHHHcCCC-eEEecchHH---HHHHhcCCCCC
Confidence 7999999999999999998 468999999 99944444444
No 39
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.42 E-value=4.8e-13 Score=121.56 Aligned_cols=123 Identities=19% Similarity=0.146 Sum_probs=76.1
Q ss_pred CcEEEeecChhhhh---hcCCCCCccccc---ccceecccc---------------CcchhHHHHHHhhCCCCCCcEEEE
Q 039798 75 NAQLLDIRNKKTMV---SLGSPNLKSLKK---SVVQVEFVE---------------GDENGFLNNVLSNFADPINTVVCI 133 (229)
Q Consensus 75 ~avlIDVR~~~Ef~---i~Gainip~~~k---gav~iP~~~---------------~~~~~f~~~l~~~~~d~~~~vIvv 133 (229)
++++||||++.||. ++|++|+|+... ..+..-|.. ...+.++.++.. +.+++..+|++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~-~~~~~~~vvvy 80 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRA-FADGPPQPLLY 80 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHh-hcCCCCcEEEE
Confidence 46899999999998 455555554210 000000000 001112222222 22223347777
Q ss_pred EcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCe------eeeCCccccccchhhHHHhhhc
Q 039798 134 LDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPA------VHILPKKKKKKTKTSQQVGING 202 (229)
Q Consensus 134 cc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~------~~~~~~~~~~~~~~~~~~~~~g 202 (229)
|+++|.||..++..|+.+|| ++++|.||+. +|+......+... ....+.+..+|+.+++.+...|
T Consensus 81 C~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~---aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~ 151 (311)
T TIGR03167 81 CWRGGMRSGSLAWLLAQIGF-RVPRLEGGYK---AYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAG 151 (311)
T ss_pred ECCCChHHHHHHHHHHHcCC-CEEEecChHH---HHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCC
Confidence 76789999999999999999 6999999999 9995442222110 0144568888999999987654
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.41 E-value=5.9e-13 Score=102.88 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHcC
Q 039798 73 DPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKNG 152 (229)
Q Consensus 73 ~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~G 152 (229)
..+-++||||+++||+. +++ | |++++|+. ++...+.....++++++|+ ||.+|.||..++..|.+.|
T Consensus 18 ~~~~~lIDvR~~~ef~~-ghI--p----GAiniP~~-----~l~~~l~~l~~~~~~~IVl-yC~~G~rS~~aa~~L~~~G 84 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQ-EHV--Q----GAINIPLK-----EVKERIATAVPDKNDTVKL-YCNAGRQSGQAKEILSEMG 84 (104)
T ss_pred cCCCEEEECCCHHHHhc-CCC--C----ccEECCHH-----HHHHHHHhcCCCCCCeEEE-EeCCChHHHHHHHHHHHcC
Confidence 44557999999999984 322 3 56677753 2333332221233456665 5569999999999999999
Q ss_pred CcceEEccCcccCccccH
Q 039798 153 FKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 153 f~~Vy~L~GGi~g~~aW~ 170 (229)
|+++++ .||+. +|.
T Consensus 85 ~~~v~~-~GG~~---~~~ 98 (104)
T PRK10287 85 YTHAEN-AGGLK---DIA 98 (104)
T ss_pred CCeEEe-cCCHH---HHh
Confidence 999988 69999 998
No 41
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.40 E-value=7.3e-13 Score=121.94 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=82.2
Q ss_pred CHHHHHHHHhCCCCcEEEeecChhhhh---hcCCCCCccccc---ccceeccccCc------------chhHHHHH---H
Q 039798 62 SAIDAFQKLRNDPNAQLLDIRNKKTMV---SLGSPNLKSLKK---SVVQVEFVEGD------------ENGFLNNV---L 120 (229)
Q Consensus 62 s~~ea~~~l~~~~~avlIDVR~~~Ef~---i~Gainip~~~k---gav~iP~~~~~------------~~~f~~~l---~ 120 (229)
...++.+++ .+++++||||++.||. ++|++|+|+... ..+..=|.... .+.+...+ .
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 355666644 3578999999999998 445555554210 00000000000 00111111 1
Q ss_pred hhCCCCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhc-------CCCCeeeeCCccccccch
Q 039798 121 SNFADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQET-------LLPPAVHILPKKKKKKTK 193 (229)
Q Consensus 121 ~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~a-------gLPl~~~~~~~~~~~~~~ 193 (229)
..++.++.++|++|.++|.||..++..|...|| +++.|.||+. +|++.... ..+.. ...+.++++||.
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~---awr~~~~~~~~~~~~~~~~i-vl~G~TGsGKT~ 156 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYK---AYRRFVIDTLEEAPAQFPLV-VLGGNTGSGKTE 156 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHH---HHHHhhHHHHhhhcccCceE-ecCCCCcccHHH
Confidence 112113566666554689999999999999999 5999999999 99954321 11221 266779999999
Q ss_pred hhHHHhhhc
Q 039798 194 TSQQVGING 202 (229)
Q Consensus 194 ~~~~~~~~g 202 (229)
++..|...|
T Consensus 157 iL~~L~~~~ 165 (345)
T PRK11784 157 LLQALANAG 165 (345)
T ss_pred HHHHHHhcC
Confidence 999998765
No 42
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.38 E-value=1.2e-12 Score=121.50 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCC-CcccccccceeccccCcc-hhHHHHHHhhCCCCCCcEEEEEcCC
Q 039798 60 FISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPN-LKSLKKSVVQVEFVEGDE-NGFLNNVLSNFADPINTVVCILDNF 137 (229)
Q Consensus 60 ~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gain-ip~~~kgav~iP~~~~~~-~~f~~~l~~~~~d~~~~vIvvcc~s 137 (229)
.++++++.+++ +++++++||||+++||+. |++. .+ +++++|+.+... ..+..++ ..++ ++++| +||++
T Consensus 272 ~~~~~el~~~l-~~~~~~lIDVR~~~E~~~-ghI~~~~----gAinIPl~~l~~~~~~~~~l-~~~~--~~~Iv-v~C~s 341 (370)
T PRK05600 272 RTDTTSLIDAT-LNGSATLLDVREPHEVLL-KDLPEGG----ASLKLPLSAITDDADILHAL-SPID--GDNVV-VYCAS 341 (370)
T ss_pred ccCHHHHHHHH-hcCCeEEEECCCHHHhhh-ccCCCCC----ccEeCcHHHhhcchhhhhhc-cccC--CCcEE-EECCC
Confidence 46889999976 555689999999999985 3332 11 466777543110 0011222 1222 34655 56679
Q ss_pred ChHHHHHHHHHHHcCCcc-eEEccCccc
Q 039798 138 DGNSLKAAELLYKNGFKE-AYAISGGVR 164 (229)
Q Consensus 138 G~RS~~Aa~~L~k~Gf~~-Vy~L~GGi~ 164 (229)
|.||..|++.|+++||++ ||+|.|||.
T Consensus 342 G~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 342 GIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999999996 999999997
No 43
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.28 E-value=1.5e-11 Score=120.77 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=78.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceecccc------------CcchhHHHHHHhhCC-C
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVE------------GDENGFLNNVLSNFA-D 125 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~------------~~~~~f~~~l~~~~~-d 125 (229)
..||++++.+++ ++++++|||+|+++||.. |+| | |++++||.. .+..+|...+ .++. +
T Consensus 9 ~lIs~~eL~~~l-~~~~vvIIDvR~~~eY~~-GHI--P----GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l-~~lGI~ 79 (610)
T PRK09629 9 LVIEPNDLLERL-DAPELILVDLTSSARYEA-GHI--R----GARFVDPKRTQLGKPPAPGLLPDTADLEQLF-GELGHN 79 (610)
T ss_pred ceecHHHHHHHh-cCCCEEEEECCChHHHHh-CCC--C----CcEEcChhHhhccCCCCCCCCCCHHHHHHHH-HHcCCC
Confidence 469999999977 667899999999999983 322 2 455555421 0112333333 3332 3
Q ss_pred CCCcEEEEEcCCC-hHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeeee
Q 039798 126 PINTVVCILDNFD-GNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVHI 183 (229)
Q Consensus 126 ~~~~vIvvcc~sG-~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~~ 183 (229)
+++++|+ ||++| .+|.+++..|+..||++|++|.||+. +|+ .+|+|++...
T Consensus 80 ~d~~VVv-Yd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~---aW~---~ag~p~~~~~ 131 (610)
T PRK09629 80 PDAVYVV-YDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL---AWE---AQALPLSTDV 131 (610)
T ss_pred CCCEEEE-ECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH---HHH---HcCCccccCC
Confidence 4666665 45455 58889999999999999999999999 999 9999987553
No 44
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.23 E-value=1.8e-11 Score=112.97 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHh-hCCCCCCcEEEEEcCCC
Q 039798 60 FISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLS-NFADPINTVVCILDNFD 138 (229)
Q Consensus 60 ~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~-~~~d~~~~vIvvcc~sG 138 (229)
.++++++.+ + .++.++||||+++||+. +++ | |++++|+.+ +...... .+ ++++++|+ +|++|
T Consensus 262 ~i~~~~~~~-~--~~~~~IIDVR~~~ef~~-ghI--p----gAinip~~~-----l~~~~~~~~~-~~~~~Ivv-yC~~G 324 (355)
T PRK05597 262 VLDVPRVSA-L--PDGVTLIDVREPSEFAA-YSI--P----GAHNVPLSA-----IREGANPPSV-SAGDEVVV-YCAAG 324 (355)
T ss_pred ccCHHHHHh-c--cCCCEEEECCCHHHHcc-CcC--C----CCEEeCHHH-----hhhccccccC-CCCCeEEE-EcCCC
Confidence 466666665 3 34679999999999985 333 3 577777643 2222111 12 33566665 55699
Q ss_pred hHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 139 GNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 139 ~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
.||..|+..|++.||++|++|.||+. +|+
T Consensus 325 ~rS~~Aa~~L~~~G~~nV~~L~GGi~---~W~ 353 (355)
T PRK05597 325 VRSAQAVAILERAGYTGMSSLDGGIE---GWL 353 (355)
T ss_pred HHHHHHHHHHHHcCCCCEEEecCcHH---HHh
Confidence 99999999999999999999999999 997
No 45
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.21 E-value=3.7e-11 Score=107.16 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCCCcEEEeecChhhhhh----------cCCCCCcccccccceeccccCcch-hH--HHHHH---hhCC-CCCCcEEEEE
Q 039798 72 NDPNAQLLDIRNKKTMVS----------LGSPNLKSLKKSVVQVEFVEGDEN-GF--LNNVL---SNFA-DPINTVVCIL 134 (229)
Q Consensus 72 ~~~~avlIDVR~~~Ef~i----------~Gainip~~~kgav~iP~~~~~~~-~f--~~~l~---~~~~-d~~~~vIvvc 134 (229)
+.++++|||+|+++||.- .| +|| |++++||.+.... .| .+++. .+.. ++++++|+ |
T Consensus 165 ~~~~~~llD~R~~~e~~G~~~~~~~~~~~G--hIp----gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~-y 237 (281)
T PRK11493 165 HEKTAQIVDARPAARFNAEVDEPRPGLRRG--HIP----GALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIA-S 237 (281)
T ss_pred cCCCcEEEeCCCccceeeeccCCCCCcccc--cCC----CcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEE-E
Confidence 445689999999999950 12 344 6777777542110 01 12221 2211 34566665 6
Q ss_pred cCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhh-cCCCCe
Q 039798 135 DNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQE-TLLPPA 180 (229)
Q Consensus 135 c~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~-agLPl~ 180 (229)
|++|.||..++..|+..||++++++.||+. .|. . +++|++
T Consensus 238 C~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~---eW~---~~~~~P~~ 278 (281)
T PRK11493 238 CGSGVTAAVVVLALATLDVPNVKLYDGAWS---EWG---ARADLPVE 278 (281)
T ss_pred CCcHHHHHHHHHHHHHcCCCCceeeCCCHH---HHc---cCCCCCcC
Confidence 679999999999999999999999999999 998 6 789975
No 46
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.20 E-value=6.7e-11 Score=105.50 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecC----------hhhhhhcCCCCCcccccccceeccccC------------cchhHH
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRN----------KKTMVSLGSPNLKSLKKSVVQVEFVEG------------DENGFL 116 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~----------~~Ef~i~Gainip~~~kgav~iP~~~~------------~~~~f~ 116 (229)
..++++++.+.+ ++++.+|||+|+ +.+|.. |+| | |++++||... +...|.
T Consensus 5 ~lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHI--p----GA~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 5 WFVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRA-GHI--P----GAVFFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred cccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHh-CcC--C----CCEEcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 358999998866 677899999997 667773 322 2 4555544210 112222
Q ss_pred HHHHhhCC-CCCCcEEEEEcCCCh-HHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 117 NNVLSNFA-DPINTVVCILDNFDG-NSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 117 ~~l~~~~~-d~~~~vIvvcc~sG~-RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
++...+. ++++++|+ ||.+|. .+..++..|+..||++|+.|.||+. +|+ .+++|+...
T Consensus 77 -~~~~~~Gi~~d~~VVv-yc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~---~~g~p~~~~ 136 (281)
T PRK11493 77 -VAMRELGVNQDKHLVV-YDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA---GWQ---RDDLLLEEG 136 (281)
T ss_pred -HHHHHcCCCCCCEEEE-ECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH---HHH---HcCCCccCC
Confidence 2223322 34566665 555665 4677888999999999999999999 999 899998754
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.17 E-value=1.3e-10 Score=105.80 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=73.9
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeec--------C-hhhhhhcCCCCCcccccccceecccc------------CcchhHH
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIR--------N-KKTMVSLGSPNLKSLKKSVVQVEFVE------------GDENGFL 116 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR--------~-~~Ef~i~Gainip~~~kgav~iP~~~------------~~~~~f~ 116 (229)
...|+++++.+.+ ++++.+|||+| + .+||.. |+ || |++++|+.. .+...|.
T Consensus 21 ~~lvs~~~L~~~l-~~~~~~IiDvr~~~~~~~r~~~~~y~~-gH--IP----gAi~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 21 EPVVSVDWLHANL-REPDVKVLDASWYMPDEQRNPIQEYQV-AH--IP----GALFFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred CceecHHHHHHHh-cCCCeEEEEeeccccCCCCchHHHHHh-cc--CC----CCeecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3579999999976 56788999996 3 367873 22 22 344444321 0112333
Q ss_pred HHHHhhCC-CCCCcEEEEEcCCCh-HHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 117 NNVLSNFA-DPINTVVCILDNFDG-NSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 117 ~~l~~~~~-d~~~~vIvvcc~sG~-RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
+.+ ..+. .+++++|+||+ .|. .+.+++..|+..||++|++|.||+. +|+ ++|+|++..
T Consensus 93 ~~l-~~~Gi~~~~~VVvY~~-~g~~~a~r~~~~L~~~G~~~V~~LdGG~~---~W~---~~G~pv~~~ 152 (320)
T PLN02723 93 AAV-SALGIENKDGVVVYDG-KGIFSAARVWWMFRVFGHEKVWVLDGGLP---KWR---ASGYDVESS 152 (320)
T ss_pred HHH-HHcCCCCCCEEEEEcC-CCcchHHHHHHHHHHcCCCceEEcCCCHH---HHH---HcCCCcccC
Confidence 333 3332 34667776655 664 5678888999999999999999999 999 999998754
No 48
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.16 E-value=1.2e-10 Score=92.34 Aligned_cols=96 Identities=18% Similarity=0.057 Sum_probs=62.3
Q ss_pred cCHHHHHHHHhCC-CCcEEEeecChhhhhhcCCCCCcccccccceeccccCc----------------chhHHHHHHhhC
Q 039798 61 ISAIDAFQKLRND-PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGD----------------ENGFLNNVLSNF 123 (229)
Q Consensus 61 Is~~ea~~~l~~~-~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~----------------~~~f~~~l~~~~ 123 (229)
|+|+++.+++... ++.++||||++.||+. +++ | +++++|+.... .+.....+. ..
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI--~----~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 73 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHI--R----GAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLR-RG 73 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Ccc--c----CcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHh-cC
Confidence 7899999977543 5789999999999983 222 2 34455543100 001111111 11
Q ss_pred CCCCCcEEEEEcCCChH---------HHHHHHHHHH--cCCcceEEccCcccCccccH
Q 039798 124 ADPINTVVCILDNFDGN---------SLKAAELLYK--NGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 124 ~d~~~~vIvvcc~sG~R---------S~~Aa~~L~k--~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++.++|+ ||.+|.+ +..+++.|.+ .|+.+|+.|+||+. +|+
T Consensus 74 --~~~~VVv-Yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~---~w~ 125 (132)
T cd01446 74 --ESLAVVV-YDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE---QFS 125 (132)
T ss_pred --CCCeEEE-EeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH---HHH
Confidence 2456665 5546654 7788888888 58889999999999 998
No 49
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.13 E-value=1.6e-10 Score=105.23 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=74.2
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhh----------hcCCCCCcccccccceeccccCc--------chhHHHHHHhh
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMV----------SLGSPNLKSLKKSVVQVEFVEGD--------ENGFLNNVLSN 122 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~----------i~Gainip~~~kgav~iP~~~~~--------~~~f~~~l~~~ 122 (229)
++.+++.+.+ ++++.+|||+|++.||. ..| ||| |++++||.... .+++...+ ..
T Consensus 192 ~~~~~v~~~~-~~~~~~iiD~R~~~ef~G~~~~~~~~~~~G--HIP----gAvnip~~~~~~~~~~~~~~~el~~~~-~~ 263 (320)
T PLN02723 192 WTLEQVKKNI-EDKTYQHIDARSKARFDGAAPEPRKGIRSG--HIP----GSKCVPFPQMLDSSQTLLPAEELKKRF-EQ 263 (320)
T ss_pred ecHHHHHHhh-cCCCeEEEECCCcccccCCCCCCCCCCcCC--cCC----CCcccCHHHhcCCCCCCCCHHHHHHHH-Hh
Confidence 5677777755 55678899999999994 112 345 68888874310 12222222 22
Q ss_pred CC-CCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCee
Q 039798 123 FA-DPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAV 181 (229)
Q Consensus 123 ~~-d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~ 181 (229)
.. ++++++|+ ||.+|.||..++-.|+..||++|+++.||+. .|.+ ...+|++.
T Consensus 264 ~gi~~~~~iv~-yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~---eW~~--~~~~Pv~~ 317 (320)
T PLN02723 264 EGISLDSPIVA-SCGTGVTACILALGLHRLGKTDVPVYDGSWT---EWGA--LPDTPVAT 317 (320)
T ss_pred cCCCCCCCEEE-ECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH---HHhc--CCCCCccC
Confidence 11 34667665 5669999999999999999999999999999 9983 34688653
No 50
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.09 E-value=9.9e-11 Score=104.94 Aligned_cols=94 Identities=24% Similarity=0.331 Sum_probs=69.4
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhhh---cCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEE
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMVS---LGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCIL 134 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i---~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvc 134 (229)
...|+|+|..+++ .++++++||.|..-||++ .||++.+. -.|.+ .+.+..+..+.++ ++++ +.|
T Consensus 112 G~yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv~p~~-------~tFre--fP~~v~~~~~~~~--~KkV-vmy 178 (308)
T COG1054 112 GTYLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAVEPDI-------ETFRE--FPAWVEENLDLLK--DKKV-VMY 178 (308)
T ss_pred cCccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCccCCCh-------hhhhh--hHHHHHHHHHhcc--CCcE-EEE
Confidence 4679999999966 788999999999999995 35555331 00111 2333444444444 4454 567
Q ss_pred cCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 135 DNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 135 c~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
|.+|.|..+|+..|+..||++||+|+|||.
T Consensus 179 CTGGIRCEKas~~m~~~GF~eVyhL~GGIl 208 (308)
T COG1054 179 CTGGIRCEKASAWMKENGFKEVYHLEGGIL 208 (308)
T ss_pred cCCceeehhhHHHHHHhcchhhhcccchHH
Confidence 779999999999999999999999999997
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.06 E-value=5.1e-10 Score=110.03 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=75.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEeecChhhhh-------hcCCCCCcccccccceeccccC-c------chhHHHHHHhhCC-
Q 039798 60 FISAIDAFQKLRNDPNAQLLDIRNKKTMV-------SLGSPNLKSLKKSVVQVEFVEG-D------ENGFLNNVLSNFA- 124 (229)
Q Consensus 60 ~Is~~ea~~~l~~~~~avlIDVR~~~Ef~-------i~Gainip~~~kgav~iP~~~~-~------~~~f~~~l~~~~~- 124 (229)
.++.+++.+.+ ++++.+|||+|+++||. ..| ||| |++++||... + ..+-+.++.+...
T Consensus 148 ~v~~e~v~~~l-~~~~~~iIDaR~~~ef~G~~~~~~r~G--HIP----GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRL-GAADLAIWDARAPTEYSGEKVVAAKGG--HIP----GAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhh-CCCCcEEEECCCccccCCcccccccCC--CCC----CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 35667777755 56678999999999995 123 344 6888887431 0 1111223323222
Q ss_pred CCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCee
Q 039798 125 DPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAV 181 (229)
Q Consensus 125 d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~ 181 (229)
++++++|+ ||.+|.||..++-.|+..||++|+++.||+. .|.+ ..++|++.
T Consensus 221 ~~~~~VVv-YC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~---eW~~--~~~lPv~~ 271 (610)
T PRK09629 221 TPDKEVIT-HCQTHHRSGFTYLVAKALGYPRVKAYAGSWG---EWGN--HPDTPVEV 271 (610)
T ss_pred CCCCCEEE-ECCCChHHHHHHHHHHHcCCCCcEEeCCCHH---HHhC--CCCCcccc
Confidence 34667665 5669999999999999999999999999999 9983 35788753
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.02 E-value=1.7e-09 Score=87.23 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=68.4
Q ss_pred cCHHHHHHHHhC---CCCcEEEeecCh--------hhhhhc-------C--CCCCcccccccceeccccC---c------
Q 039798 61 ISAIDAFQKLRN---DPNAQLLDIRNK--------KTMVSL-------G--SPNLKSLKKSVVQVEFVEG---D------ 111 (229)
Q Consensus 61 Is~~ea~~~l~~---~~~avlIDVR~~--------~Ef~i~-------G--ainip~~~kgav~iP~~~~---~------ 111 (229)
+|++++.+.+.+ +++.+|||+|.. +||... + .-+|| |++++||... +
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP----gAv~~~~~~~~~~~~~~~~~ 76 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP----GASFFDFEECLDEAGFEESM 76 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC----CCEeeCHHHhhCcCCCCCCC
Confidence 578888886632 467899999987 888730 0 02455 6888886431 0
Q ss_pred c---hhHHHHHHhhCC-CCCCcEEEEEcCC---ChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 112 E---NGFLNNVLSNFA-DPINTVVCILDNF---DGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 112 ~---~~f~~~l~~~~~-d~~~~vIvvcc~s---G~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
. .+|. ++...+. +++.++|+ ||.+ |.+|..+.-.|+..|+++|+.|.||+. +|+
T Consensus 77 ~p~~~~~~-~~~~~~GI~~~~~vVv-Y~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~---~W~ 137 (138)
T cd01445 77 EPSEAEFA-AMFEAKGIDLDKHLIA-TDGDDLGGFTACHIALAARLCGHPDVAILDGGFF---EWF 137 (138)
T ss_pred CCCHHHHH-HHHHHcCCCCCCeEEE-ECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH---Hhh
Confidence 1 1222 2233332 34566665 5544 778889999999999999999999999 996
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.85 E-value=5.6e-09 Score=100.06 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccc----cceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCCh
Q 039798 64 IDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKS----VVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDG 139 (229)
Q Consensus 64 ~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kg----av~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~ 139 (229)
.+..+.+ .+++++||||+++||+. +++ | | ++++|+.+ +...+ ..+ ++++++|+ ||++|.
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~-~hI--~----g~~~~a~niP~~~-----l~~~~-~~l-~~~~~iiv-yC~~G~ 460 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQED-KPL--K----LEGVEVKSLPFYK-----LSTQF-GDL-DQSKTYLL-YCDRGV 460 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhc-CCC--C----CCCceEEECCHHH-----HHHHH-hhc-CCCCeEEE-ECCCCH
Confidence 4444434 45789999999999984 322 2 4 67777633 33333 233 33566655 556999
Q ss_pred HHHHHHHHHHHcCCcceEEccC
Q 039798 140 NSLKAAELLYKNGFKEAYAISG 161 (229)
Q Consensus 140 RS~~Aa~~L~k~Gf~~Vy~L~G 161 (229)
||..||..|+++||++|+++.+
T Consensus 461 rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 461 MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHcCCccEEecCC
Confidence 9999999999999999987753
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.81 E-value=4.9e-09 Score=95.93 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=73.8
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCC
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNF 137 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~s 137 (229)
-..||..|..+++.+.+..++||||++.||+|...+ +++|||+.+..... .+++.........++ +|.|+.
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~-~~~~~~~~~~~~~~I-~ViCrr 386 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRS-GKKLQGDLNTESKDI-FVICRR 386 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhh-hhhhcccccccCCCE-EEEeCC
Confidence 467899999998877788999999999999963222 14444443311000 122222222224454 555669
Q ss_pred ChHHHHHHHHHHHcCC-cceEEccCcccCccccHhhhhcCCCC
Q 039798 138 DGNSLKAAELLYKNGF-KEAYAISGGVRGKKGWLAIQETLLPP 179 (229)
Q Consensus 138 G~RS~~Aa~~L~k~Gf-~~Vy~L~GGi~g~~aW~~~~~agLPl 179 (229)
|+.|+.|++.|++..+ ..++.+.||+. +|....+..+|.
T Consensus 387 GNdSQ~Av~~Lre~~~~~~vrDvigGl~---~w~~~vd~~fP~ 426 (427)
T KOG2017|consen 387 GNDSQRAVRILREKFPDSSVRDVIGGLK---AWAAKVDPNFPL 426 (427)
T ss_pred CCchHHHHHHHHhhCCchhhhhhhhHHH---HHHHhcCcCCCC
Confidence 9999999999997654 45778899999 999766666663
No 55
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.5e-07 Score=84.83 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=73.0
Q ss_pred cCHHHHHHHHhCCCCcEEEeecChhhhhh------cC-CCCCcccccccceeccccCcc-------hhHHHHHHh--hCC
Q 039798 61 ISAIDAFQKLRNDPNAQLLDIRNKKTMVS------LG-SPNLKSLKKSVVQVEFVEGDE-------NGFLNNVLS--NFA 124 (229)
Q Consensus 61 Is~~ea~~~l~~~~~avlIDVR~~~Ef~i------~G-ainip~~~kgav~iP~~~~~~-------~~f~~~l~~--~~~ 124 (229)
.+..+....+ +....+|||+|+++||.- .+ +=||| |++|+||...-+ ++....+.+ .+
T Consensus 158 ~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP----GAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi- 231 (285)
T COG2897 158 VDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIP----GAINIPWTDLVDDGGLFKSPEEIARLYADAGI- 231 (285)
T ss_pred CCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCC----CCcCcCHHHHhcCCCccCcHHHHHHHHHhcCC-
Confidence 4445555534 566788999999999981 10 12445 799999865211 112222221 12
Q ss_pred CCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCe
Q 039798 125 DPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPA 180 (229)
Q Consensus 125 d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~ 180 (229)
++++++|+ ||.+|.||....-.|+..|+.++.++.|+.. .|-+ ..+.|++
T Consensus 232 ~~~~~vI~-yCgsG~~As~~~~al~~lg~~~~~lYdGSWs---EWg~--~~~~PV~ 281 (285)
T COG2897 232 DPDKEVIV-YCGSGVRASVTWLALAELGGPNNRLYDGSWS---EWGS--DPDRPVE 281 (285)
T ss_pred CCCCCEEE-EcCCchHHHHHHHHHHHhCCCCcccccChHH---Hhhc--CCCCccc
Confidence 45777776 5569999999999999999988889999999 9983 3446764
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.19 E-value=1e-05 Score=73.01 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCcccCHHHHHHHHhCCC-----CcEEEeecCh--hhhhhcCCCCCcccccccceecccc------------CcchhHHH
Q 039798 57 KCKFISAIDAFQKLRNDP-----NAQLLDIRNK--KTMVSLGSPNLKSLKKSVVQVEFVE------------GDENGFLN 117 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~-----~avlIDVR~~--~Ef~i~Gainip~~~kgav~iP~~~------------~~~~~f~~ 117 (229)
...-||++-+.+.| .++ ++.+++++.. ++|...| || ||+.+++.. .+.+.|.+
T Consensus 9 ~~~lVs~~wl~~~l-~~~~~~~~d~~~~~~~~~~~~~Y~~~H---IP----GAv~~d~~~~~~~~~~~~~~lp~~e~fa~ 80 (285)
T COG2897 9 SEFLVSPDWLAENL-DDPAVVIVDARIILPDPDDAEEYLEGH---IP----GAVFFDWEADLSDPVPLPHMLPSPEQFAK 80 (285)
T ss_pred cceEEcHHHHHhhc-cccccccCceEEEeCCcchHHHHHhcc---CC----CCEecCHHHhhcCCCCCCCCCCCHHHHHH
Confidence 44568888888755 333 7778887777 7776322 22 344444422 11123333
Q ss_pred HHHhhCC-CCCCcEEEEEc-CCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeee
Q 039798 118 NVLSNFA-DPINTVVCILD-NFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVH 182 (229)
Q Consensus 118 ~l~~~~~-d~~~~vIvvcc-~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~ 182 (229)
+...+. ..+.++| +|. .++.-|.+|.-.|+-+|.++|+.|.||+. +|+ .+++|+...
T Consensus 81 -~~~~~GI~~d~tVV-vYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~---~W~---~~g~p~~~~ 139 (285)
T COG2897 81 -LLGELGIRNDDTVV-VYDDGGGFFAARAWWLLRYLGHENVRILDGGLP---AWK---AAGLPLETE 139 (285)
T ss_pred -HHHHcCCCCCCEEE-EECCCCCeehHHHHHHHHHcCCCceEEecCCHH---HHH---HcCCCccCC
Confidence 333332 3344554 565 44456999999999999999999999999 999 999999853
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=1.4e-05 Score=73.01 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=66.5
Q ss_pred hhCCCcccCHHHHHHHHhCC-----CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCC-CCC
Q 039798 54 YLSKCKFISAIDAFQKLRND-----PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFA-DPI 127 (229)
Q Consensus 54 ~~~~~~~Is~~ea~~~l~~~-----~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~-d~~ 127 (229)
....++.||++.+..+|.+. ...+|||+|-|-||. .|+|. |+++++..+.....|... ...+ ...
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~-GGHIk------gavnl~~~~~~~~~f~~~--~~~~~~~~ 221 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYE-GGHIK------GAVNLYSKELLQDFFLLK--DGVPSGSK 221 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCccccc-Ccccc------cceecccHhhhhhhhccc--cccccccC
Confidence 44568999999999988641 125699999999998 34443 455555432111111110 0111 012
Q ss_pred C-cEEEEEcCCChHHHHHHHHHHH------------cCCcceEEccCcccCccccH
Q 039798 128 N-TVVCILDNFDGNSLKAAELLYK------------NGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 128 ~-~vIvvcc~sG~RS~~Aa~~L~k------------~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
. .+||.|--+-.|.-++|+.|++ .-|.++|+|.||+. .|-
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk---~ff 274 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYK---EFF 274 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHH---HHH
Confidence 3 3455444555799999999994 34567999999999 987
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.16 E-value=0.029 Score=50.65 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCcEEEEEcC--CCh-HHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeeee
Q 039798 127 INTVVCILDN--FDG-NSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVHI 183 (229)
Q Consensus 127 ~~~vIvvcc~--sG~-RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~~ 183 (229)
....++||.+ .|. .|.+++-+++-.|+++|+.|.||++ +|+ .+++|+....
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~---~Wk---~~g~~~~s~~ 138 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFR---AWK---AAGGPVDSSK 138 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHH---HHH---HcCCcccccc
Confidence 3445667886 554 5788888999999999999999999 999 9999987654
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=95.25 E-value=0.047 Score=49.30 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCcEEEeecChhhhhh------cC--CCCCcccccccceeccccCc--------chhHHHHH-HhhCCCCCCcEEEEEcC
Q 039798 74 PNAQLLDIRNKKTMVS------LG--SPNLKSLKKSVVQVEFVEGD--------ENGFLNNV-LSNFADPINTVVCILDN 136 (229)
Q Consensus 74 ~~avlIDVR~~~Ef~i------~G--ainip~~~kgav~iP~~~~~--------~~~f~~~l-~~~~~d~~~~vIvvcc~ 136 (229)
.+...||-|...+|.- .+ .-||| |++++|+.+.- ..+....+ .+.++ .++|+|+.| .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIp----Ga~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~-~~~p~~~sC-~ 244 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIP----GAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLK-LSKPVIVSC-G 244 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCC----CcccCChHHhcccccccCCHHHHHHHHHhcCcc-cCCCEEEee-c
Confidence 4578999999999981 01 11344 78888875511 01111111 12343 367877655 4
Q ss_pred CChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 137 FDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 137 sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
.|..+...+-.|...| .+|-.+.|++. .|.
T Consensus 245 ~Gisa~~i~~al~r~g-~~~~lYdGS~~---Ew~ 274 (286)
T KOG1529|consen 245 TGISASIIALALERSG-PDAKLYDGSWT---EWA 274 (286)
T ss_pred cchhHHHHHHHHHhcC-CCcceecccHH---HHh
Confidence 9999999999999999 67888999998 887
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.09 E-value=0.084 Score=48.70 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=67.2
Q ss_pred CcccCHHHHHHHHhCC-----CCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEE
Q 039798 58 CKFISAIDAFQKLRND-----PNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVC 132 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~-----~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIv 132 (229)
++.||++.+...|.+. -+.+|||.|=+-||.-.+.+| +++|--. ..+...++.+.---..-+|+
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIin-------aVNi~s~----~~l~~~F~hkplThp~aLif 309 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIIN-------AVNISST----KKLGLLFRHKPLTHPRALIF 309 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeee-------eeecchH----HHHHHHHHhccccCceeEEE
Confidence 6889999999977532 146799999999998322222 3333211 12222222121000223444
Q ss_pred EEcCCChHHHHHHHHHHHc------------CCcceEEccCcccCccccHhhhhcCCCCeeeeCCcccccc
Q 039798 133 ILDNFDGNSLKAAELLYKN------------GFKEAYAISGGVRGKKGWLAIQETLLPPAVHILPKKKKKK 191 (229)
Q Consensus 133 vcc~sG~RS~~Aa~~L~k~------------Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~~~~~~~~~~ 191 (229)
-|--+..|+-..|..|+.. =|..||+|.||+. +.- .++|- .+.|+.=.++
T Consensus 310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk---~fy----~n~p~--lCdP~~YV~M 371 (427)
T COG5105 310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYK---KFY----SNYPD--LCDPKGYVTM 371 (427)
T ss_pred EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHH---HHh----hcCcc--ccCccccccc
Confidence 4445567899999988853 2467999999998 655 45553 3666644443
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.78 E-value=0.14 Score=40.84 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=47.3
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhhh-cCC---------CCCcccccccceeccccCcc-hhHHHHHHhhCCCCC
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMVS-LGS---------PNLKSLKKSVVQVEFVEGDE-NGFLNNVLSNFADPI 127 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i-~Ga---------inip~~~kgav~iP~~~~~~-~~f~~~l~~~~~d~~ 127 (229)
..++++++.. |.+.+=-.+||.|++.|-.. +.. .++ ..+++|+..... +.-...+.+.+...+
T Consensus 13 ~qlt~~d~~~-L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl-----~y~~iPv~~~~~~~~~v~~f~~~~~~~~ 86 (135)
T TIGR01244 13 PQLTKADAAQ-AAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGV-----TYHHQPVTAGDITPDDVETFRAAIGAAE 86 (135)
T ss_pred CCCCHHHHHH-HHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCC-----eEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 6789999887 44444457999999877441 110 122 245666533211 111222222222224
Q ss_pred CcEEEEEcCCChHHHHHHHHHH-HcCC
Q 039798 128 NTVVCILDNFDGNSLKAAELLY-KNGF 153 (229)
Q Consensus 128 ~~vIvvcc~sG~RS~~Aa~~L~-k~Gf 153 (229)
.|+ +++|++|.|+..++.++. ..|.
T Consensus 87 ~pv-L~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 87 GPV-LAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred CCE-EEEcCCChHHHHHHHHHHHHcCC
Confidence 564 567789999887665433 3344
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=93.79 E-value=0.039 Score=50.20 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCcEEEeecChhhhh---hcCCCCCccccc---ccceecccc--Ccch----------hHHHHHH---hhCCCCCCcEEE
Q 039798 74 PNAQLLDIRNKKTMV---SLGSPNLKSLKK---SVVQVEFVE--GDEN----------GFLNNVL---SNFADPINTVVC 132 (229)
Q Consensus 74 ~~avlIDVR~~~Ef~---i~Gainip~~~k---gav~iP~~~--~~~~----------~f~~~l~---~~~~d~~~~vIv 132 (229)
.+..+||||.|-||. .++++|+|.... .++-.-|.. .+.. +....++ ..+. .+.|+-+
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~-e~~~~Gi 92 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ-EENPVGI 92 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhCCcce
Confidence 467899999999998 456667665321 111111111 0000 0011111 1111 1456656
Q ss_pred EEcCCChHHHHHHHHH-HHcCCcceEEccCcccCccccHhhh-------hcCCCCeeeeCCccccccchhhHHH
Q 039798 133 ILDNFDGNSLKAAELL-YKNGFKEAYAISGGVRGKKGWLAIQ-------ETLLPPAVHILPKKKKKKTKTSQQV 198 (229)
Q Consensus 133 vcc~sG~RS~~Aa~~L-~k~Gf~~Vy~L~GGi~g~~aW~~~~-------~agLPl~~~~~~~~~~~~~~~~~~~ 198 (229)
.|.++|.||...+..| ...|+. .--+.||+. +.+... -+.-|+. ..|-++.+|+.+..++
T Consensus 93 ~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeK---alrt~~~~a~~~~i~~k~~i--l~g~Tgcgkt~lve~l 160 (334)
T COG2603 93 LCARGGLRSKIVQKWLGYAAGID-YPRVIGGEK---ALRTFAIQATIKEIAQKDFI--LCGCTGCGKTELVEQL 160 (334)
T ss_pred eeccccchhHHHHHHHHHHHHhh-hhhhhchHH---HHHHHHHHHHHHHhccCCEE--EeCCCCCcHHHHHHhC
Confidence 6889999999999999 778886 445679998 665321 1122332 3445667777776655
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.28 E-value=0.22 Score=38.84 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=36.5
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhh----------hcCCCCCcccccccceeccccCcc-hhHHHHHHhhCCCC
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMV----------SLGSPNLKSLKKSVVQVEFVEGDE-NGFLNNVLSNFADP 126 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~----------i~Gainip~~~kgav~iP~~~~~~-~~f~~~l~~~~~d~ 126 (229)
...++++++.+ +.+.+=-.||+.|+..|=. ..-...+ ..+++|...... .+-...+.+.+...
T Consensus 12 s~Q~~~~d~~~-la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-----~y~~iPv~~~~~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 12 SGQPSPEDLAQ-LAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-----QYVHIPVDGGAITEEDVEAFADALESL 85 (110)
T ss_dssp ECS--HHHHHH-HHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT------EEEE----TTT--HHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHH-HHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-----eEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 35789999998 4444445799999886521 0111122 245666543221 11122222211111
Q ss_pred CCcEEEEEcCCChHHHHHHHHH
Q 039798 127 INTVVCILDNFDGNSLKAAELL 148 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~Aa~~L 148 (229)
.+|+ +++|++|.||.....+-
T Consensus 86 ~~Pv-l~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 86 PKPV-LAHCRSGTRASALWALA 106 (110)
T ss_dssp TTSE-EEE-SCSHHHHHHHHHH
T ss_pred CCCE-EEECCCChhHHHHHHHH
Confidence 3465 56777999997665443
No 64
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=83.98 E-value=5.9 Score=30.52 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=12.9
Q ss_pred HhCCCCcEEEeecChhhh
Q 039798 70 LRNDPNAQLLDIRNKKTM 87 (229)
Q Consensus 70 l~~~~~avlIDVR~~~Ef 87 (229)
+.+.+=..+||+|+..++
T Consensus 23 L~~~gi~~VI~l~~~~~~ 40 (139)
T cd00127 23 LKKLGITHVLNVAKEVPN 40 (139)
T ss_pred HHHcCCCEEEEcccCCCC
Confidence 333444579999999886
No 65
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=82.23 E-value=1.8 Score=35.27 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=25.9
Q ss_pred CCcEEEEEcC----CChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 127 INTVVCILDN----FDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 127 ~~~vIvvcc~----sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
+..++++++. .|..-..++++|++.|..++.+|+||-.
T Consensus 100 ~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 100 DGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp TSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred CCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 5577777874 3677788999999999999999999987
No 66
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.08 E-value=5.2 Score=32.52 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=18.2
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhhh
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMVS 89 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i 89 (229)
...+|+++... |.+-.=..+||.|++.|.+.
T Consensus 27 l~~lt~~d~~~-L~~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 27 LSNLTEADLER-LRELGIRTIIDLRSPTERER 57 (164)
T ss_dssp -TT--HHHHHH-HHHTT--EEEE-S-HHHHHH
T ss_pred cCcCCHHHHHH-HHhCCCCEEEECCCcccccc
Confidence 46788888877 44444457999999999883
No 67
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=77.15 E-value=12 Score=29.00 Aligned_cols=75 Identities=8% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcch---hHHHHH---HhhCCCCCCcEEEEEcCCCh-HHHH-
Q 039798 72 NDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDEN---GFLNNV---LSNFADPINTVVCILDNFDG-NSLK- 143 (229)
Q Consensus 72 ~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~---~f~~~l---~~~~~d~~~~vIvvcc~sG~-RS~~- 143 (229)
+.+=..+|++++..+... ...+ ..+++|+.+.... .+.... .+.... ....|+|+|..|. ||..
T Consensus 24 ~~gi~~Vi~l~~~~~~~~--~~~~-----~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 24 KLGITHVINVTNEVPNLN--KKGF-----TYLGVPILDNTETKISPYFPEAVEFIEDAEK-KGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred HcCCCEEEEccCCCCCCC--CCCC-----EEEEEECCCCCCCChHHHHHHHHHHHHHHhc-CCCeEEEECCCCCchHHHH
Confidence 333457999998765321 1111 2455665441111 111211 122112 3344667888884 7664
Q ss_pred HHH-HHHHcCCc
Q 039798 144 AAE-LLYKNGFK 154 (229)
Q Consensus 144 Aa~-~L~k~Gf~ 154 (229)
++. .+...|++
T Consensus 96 ~~~yl~~~~~~~ 107 (138)
T smart00195 96 IIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHhCCC
Confidence 333 45456653
No 68
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=67.01 E-value=7.5 Score=30.41 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=30.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHc----CCcceEEccCcccCccccH
Q 039798 130 VVCILDNFDGNSLKAAELLYKN----GFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~----Gf~~Vy~L~GGi~g~~aW~ 170 (229)
++|||-.+-.||..|...|++. +-.++.....|+. +|.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~---~~~ 42 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTE---AWP 42 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESS---STT
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeec---ccc
Confidence 4677765557999999999988 6677888889998 764
No 69
>PLN02727 NAD kinase
Probab=66.06 E-value=14 Score=38.78 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=45.1
Q ss_pred CcccCHHHHHHHHhCCCCcEEEeecChhhhh------h---cCCCCCcccccccceecccc--CcchhHHHHHHhhCC-C
Q 039798 58 CKFISAIDAFQKLRNDPNAQLLDIRNKKTMV------S---LGSPNLKSLKKSVVQVEFVE--GDENGFLNNVLSNFA-D 125 (229)
Q Consensus 58 ~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~------i---~Gainip~~~kgav~iP~~~--~~~~~f~~~l~~~~~-d 125 (229)
...++++++.. +.+.+=-.||+.|+..|-. + ...-.+ ..+++|... ....+-++++.+.+. .
T Consensus 266 sgQpspe~la~-LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL-----~yVhIPVs~~~apt~EqVe~fa~~l~~s 339 (986)
T PLN02727 266 GGQVTEEGLKW-LLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI-----EVVKIPVEVRTAPSAEQVEKFASLVSDS 339 (986)
T ss_pred eCCCCHHHHHH-HHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC-----eEEEeecCCCCCCCHHHHHHHHHHHHhh
Confidence 46789999977 4344334699999988721 0 000112 246666522 112233444444341 1
Q ss_pred CCCcEEEEEcCCChH--HHHHHHHHH
Q 039798 126 PINTVVCILDNFDGN--SLKAAELLY 149 (229)
Q Consensus 126 ~~~~vIvvcc~sG~R--S~~Aa~~L~ 149 (229)
..+|+ +++|++|.| +..+|.+|.
T Consensus 340 lpkPV-LvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 340 SKKPI-YLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred cCCCE-EEECCCCCchHHHHHHHHHH
Confidence 24555 568889984 344555554
No 70
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.93 E-value=11 Score=30.14 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=44.2
Q ss_pred hCCCcccCHHHHHHHHhCCCCcEEEeecChhhhh----------hcCCCCCcccccccceecccc-----CcchhHHHHH
Q 039798 55 LSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMV----------SLGSPNLKSLKKSVVQVEFVE-----GDENGFLNNV 119 (229)
Q Consensus 55 ~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~----------i~Gainip~~~kgav~iP~~~-----~~~~~f~~~l 119 (229)
++-...++++|+.+ +....=..+|--|+..|=. ...+-.+. ..+||... .+...|...+
T Consensus 10 lsVsgQi~~~D~~~-iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-----y~~iPV~~~~iT~~dV~~f~~Al 83 (130)
T COG3453 10 LSVSGQISPADIAS-IAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-----YTHIPVTGGGITEADVEAFQRAL 83 (130)
T ss_pred eeecCCCCHHHHHH-HHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-----eEEeecCCCCCCHHHHHHHHHHH
Confidence 34457899999988 4344334689999877632 01112222 24555432 1223343333
Q ss_pred HhhCCCCCCcEEEEEcCCChHHHHHH
Q 039798 120 LSNFADPINTVVCILDNFDGNSLKAA 145 (229)
Q Consensus 120 ~~~~~d~~~~vIvvcc~sG~RS~~Aa 145 (229)
. ....|++ .||++|.||...-
T Consensus 84 ~----eaegPVl-ayCrsGtRs~~ly 104 (130)
T COG3453 84 D----EAEGPVL-AYCRSGTRSLNLY 104 (130)
T ss_pred H----HhCCCEE-eeecCCchHHHHH
Confidence 2 2255655 5777999997643
No 71
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=63.93 E-value=6.8 Score=29.92 Aligned_cols=33 Identities=27% Similarity=0.185 Sum_probs=21.5
Q ss_pred EEEEcCCChHHHHHHHHHH----HcCCcceEEccCccc
Q 039798 131 VCILDNFDGNSLKAAELLY----KNGFKEAYAISGGVR 164 (229)
Q Consensus 131 Ivvcc~sG~RS~~Aa~~L~----k~Gf~~Vy~L~GGi~ 164 (229)
|++||.+|..|..+++.++ ++|++ +..-..++.
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~ 39 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYG 39 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHH
Confidence 5667878888877777655 56874 444444444
No 72
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=56.78 E-value=13 Score=27.86 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=20.0
Q ss_pred EEEEcCCChHHHHHHHHHH----HcCCcceEEccCccc
Q 039798 131 VCILDNFDGNSLKAAELLY----KNGFKEAYAISGGVR 164 (229)
Q Consensus 131 Ivvcc~sG~RS~~Aa~~L~----k~Gf~~Vy~L~GGi~ 164 (229)
|++||.+|..|..+++.++ ++|++ +..-..++.
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~ 38 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPES 38 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHH
Confidence 5567879988766666554 46774 433344443
No 73
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=55.73 E-value=21 Score=27.79 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=25.9
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
.+++||-..-.||..|..+|++.+-.++.....|+.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 467777655579999999999876445555666766
No 74
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.41 E-value=10 Score=35.57 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCC
Q 039798 16 KIDLESILLAIDDFFNRYPFFVATCTFIWLVVIPLTQEYLSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~F~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gaini 95 (229)
..|...++++++.|+..+.-++..-+.+=+.+-.++.+.+++.-+|+-.+-.. +..|..-.-|-. -.-.+
T Consensus 241 s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLt---------l~GvtQyYafV~-e~qKv 310 (459)
T KOG0326|consen 241 SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELT---------LKGVTQYYAFVE-ERQKV 310 (459)
T ss_pred chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhh---------hcchhhheeeec-hhhhh
Confidence 46788999999999987644332211111233455667777766666544333 222221111110 00000
Q ss_pred cccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhc
Q 039798 96 KSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQET 175 (229)
Q Consensus 96 p~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~a 175 (229)
- + +..+..++. -.+. |+.| ++-+|-...|+...+.||. +|.+---|. .+
T Consensus 311 h-----C-------------LntLfskLq-INQs-IIFC-NS~~rVELLAkKITelGys-cyyiHakM~---------Q~ 359 (459)
T KOG0326|consen 311 H-----C-------------LNTLFSKLQ-INQS-IIFC-NSTNRVELLAKKITELGYS-CYYIHAKMA---------QE 359 (459)
T ss_pred h-----h-------------HHHHHHHhc-ccce-EEEe-ccchHhHHHHHHHHhccch-hhHHHHHHH---------Hh
Confidence 0 0 122223332 1334 4335 5999999999999999997 777765565 12
Q ss_pred CCCCeeeeCCccccccchhhHHHhhhcccccCCC
Q 039798 176 LLPPAVHILPKKKKKKTKTSQQVGINGIDQQAGD 209 (229)
Q Consensus 176 gLPl~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (229)
.--.+.|.. +.++=|..+-..|=++|.|.|+-|
T Consensus 360 hRNrVFHdF-r~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 360 HRNRVFHDF-RNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred hhhhhhhhh-hccccceeeehhhhhcccccceee
Confidence 222333333 345568889999999998777654
No 75
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.86 E-value=18 Score=27.15 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=20.5
Q ss_pred EEEEEcCCChHHHHHHHHHH----HcCCcceEEccCccc
Q 039798 130 VVCILDNFDGNSLKAAELLY----KNGFKEAYAISGGVR 164 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~----k~Gf~~Vy~L~GGi~ 164 (229)
-|++||.+|..|..++..++ +.|++ +..-..++.
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~ 42 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYG 42 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHH
Confidence 35567779987766666554 56775 433344443
No 76
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=53.90 E-value=16 Score=28.15 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=16.8
Q ss_pred EEEEcCCChHHHHHHHHHH----HcCCc
Q 039798 131 VCILDNFDGNSLKAAELLY----KNGFK 154 (229)
Q Consensus 131 Ivvcc~sG~RS~~Aa~~L~----k~Gf~ 154 (229)
|++||.+|..|..+++.++ ++|++
T Consensus 4 ILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 4 ALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred EEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 5567779988777776654 46774
No 77
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=52.99 E-value=20 Score=29.77 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=16.0
Q ss_pred CCcEEEEEcCCC-hHHHH-HH-HHHHHcCCc
Q 039798 127 INTVVCILDNFD-GNSLK-AA-ELLYKNGFK 154 (229)
Q Consensus 127 ~~~vIvvcc~sG-~RS~~-Aa-~~L~k~Gf~ 154 (229)
+...|+|+|+.| .||.. +| -.|...|..
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 334677899888 46653 33 345553443
No 78
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=52.42 E-value=21 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=22.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcceEEc
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
+-+||...-+||+.|-..|+++|| +|...
T Consensus 4 ~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 4 FAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 456677566899999999999999 47665
No 79
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=51.98 E-value=36 Score=25.14 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHH
Q 039798 20 ESILLAIDDFFNRYPFFVATC-TFIWLVVIPLT 51 (229)
Q Consensus 20 ~~~~~~~~~F~~~~~~l~~~~-~~~~~l~~~~~ 51 (229)
....+...+++.+||+-..++ +.+++++-.++
T Consensus 59 ~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 59 REAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 566788899999999988553 33344443333
No 80
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=49.88 E-value=39 Score=29.17 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHhhCCCCCCcEEEEEcCCChH---HHHHHHHHHHcCCcceEEccC
Q 039798 119 VLSNFADPINTVVCILDNFDGN---SLKAAELLYKNGFKEAYAISG 161 (229)
Q Consensus 119 l~~~~~d~~~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~L~G 161 (229)
+.+.+++.....|+++|.+|+. ...||+.|...|+.-...+.|
T Consensus 40 i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 40 ILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred HHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeC
Confidence 3445542113334556646654 789999999999863333334
No 81
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=49.05 E-value=25 Score=27.50 Aligned_cols=35 Identities=14% Similarity=-0.062 Sum_probs=24.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
+++||-..-.||..|..+|++..=.++.....|+.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~ 35 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTG 35 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCccc
Confidence 35666544468999999998765334666777877
No 82
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.05 E-value=20 Score=34.55 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCChH---HHHHHHHHHHcCCcceEE
Q 039798 127 INTVVCILDNFDGN---SLKAAELLYKNGFKEAYA 158 (229)
Q Consensus 127 ~~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~ 158 (229)
..|.|++||..|++ ...+++.|...||+.+..
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~ 299 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLVCGRHLAQHGYTPVIY 299 (453)
T ss_pred CCceEEEEeCCCCccchhHHHHHHHHHcCceeEEE
Confidence 45678899977765 456899999999986533
No 83
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=48.94 E-value=32 Score=30.46 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCcccCHHHHHHHHhCCC--Cc--EEEeecChhhhh-hcCCCCC--cccccccceecc--ccCcchhHHHHHHhhCCC-C
Q 039798 57 KCKFISAIDAFQKLRNDP--NA--QLLDIRNKKTMV-SLGSPNL--KSLKKSVVQVEF--VEGDENGFLNNVLSNFAD-P 126 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~~~--~a--vlIDVR~~~Ef~-i~Gaini--p~~~kgav~iP~--~~~~~~~f~~~l~~~~~d-~ 126 (229)
+.-.=||.+|...+.+.+ ++ +=+-+=+-.||+ +.+-++- +.+.+--+..|+ .-.|...+.+.+...+++ +
T Consensus 56 gi~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~ 135 (265)
T COG4822 56 GIDFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLN 135 (265)
T ss_pred CcccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcC
Confidence 455668888888785432 22 235566777777 1111110 000000111121 112334455666555543 2
Q ss_pred CCcEEEEEcCCChHHHH----HH--HHHHHcCCcceEEc
Q 039798 127 INTVVCILDNFDGNSLK----AA--ELLYKNGFKEAYAI 159 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~----Aa--~~L~k~Gf~~Vy~L 159 (229)
++..+++.| +|..+.. |+ ..|.+.||.+||..
T Consensus 136 k~e~~vlmg-HGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 136 KDEILVLMG-HGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred cCeEEEEEe-cCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 334444455 5543221 11 25678999998754
No 84
>PRK13530 arsenate reductase; Provisional
Probab=47.14 E-value=39 Score=26.67 Aligned_cols=38 Identities=13% Similarity=-0.060 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 127 INTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
.+.++|||-..-.||..|..++++..=.++.....|+.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34677777655579999999998753234555566665
No 85
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.26 E-value=32 Score=26.36 Aligned_cols=27 Identities=7% Similarity=-0.086 Sum_probs=19.0
Q ss_pred HHHHhhchHHH-HHHHHHHHHHHHHHHH
Q 039798 27 DDFFNRYPFFV-ATCTFIWLVVIPLTQE 53 (229)
Q Consensus 27 ~~F~~~~~~l~-~~~~~~~~l~~~~~~~ 53 (229)
.+|+..||.++ +++.+++.++|..+.+
T Consensus 2 ~~~~~~~w~ii~a~~~~~~~~~~~~l~~ 29 (106)
T PF10805_consen 2 WEFIKKNWGIIWAVFGIAGGIFWLWLRR 29 (106)
T ss_pred hHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 58999999887 4455566666666655
No 86
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=44.00 E-value=70 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCChH---HHHHHHHHHHcCCcceEE
Q 039798 127 INTVVCILDNFDGN---SLKAAELLYKNGFKEAYA 158 (229)
Q Consensus 127 ~~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~ 158 (229)
..+++++| ..|+. ...+|+.|.+.||+ |..
T Consensus 25 ~~~v~il~-G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 25 GPRVLILC-GPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp T-EEEEEE--SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred CCeEEEEE-CCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 44555545 47754 78899999999997 544
No 87
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=42.95 E-value=34 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=14.9
Q ss_pred EEEEcCCChH-HHHHHH----HHHHcCCc
Q 039798 131 VCILDNFDGN-SLKAAE----LLYKNGFK 154 (229)
Q Consensus 131 Ivvcc~sG~R-S~~Aa~----~L~k~Gf~ 154 (229)
|+++|.+|.. |..++. .|.++|++
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 5567779974 555444 45567875
No 88
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=41.36 E-value=30 Score=29.24 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=42.8
Q ss_pred hCCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEE
Q 039798 55 LSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCIL 134 (229)
Q Consensus 55 ~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvc 134 (229)
+++-..+.++-|.-+-.-+.+.++||+=.. +. ...+. .....|++.++++++ +.|+|++-
T Consensus 41 fsG~~~le~~~a~~ia~~~a~~~~ld~~~N--~~---~~~~~-------------~~~~~fv~~iR~~hP--~tPIllv~ 100 (178)
T PF14606_consen 41 FSGNGKLEPEVADLIAEIDADLIVLDCGPN--MS---PEEFR-------------ERLDGFVKTIREAHP--DTPILLVS 100 (178)
T ss_dssp -TCCCS--HHHHHHHHHS--SEEEEEESHH--CC---TTTHH-------------HHHHHHHHHHHTT-S--SS-EEEEE
T ss_pred ecCccccCHHHHHHHhcCCCCEEEEEeecC--CC---HHHHH-------------HHHHHHHHHHHHhCC--CCCEEEEe
Confidence 344455665533332222457889998654 11 00000 012457777777765 77887765
Q ss_pred cC---CC-h-----------H--HHHHHHHHHHcCCcceEEccC
Q 039798 135 DN---FD-G-----------N--SLKAAELLYKNGFKEAYAISG 161 (229)
Q Consensus 135 c~---sG-~-----------R--S~~Aa~~L~k~Gf~~Vy~L~G 161 (229)
.- .+ . | -..+.+.|++.|.+|+|.+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 101 PIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp ----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred cCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 20 01 0 1 235667788889999999976
No 89
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=41.33 E-value=78 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhCCCcccCH
Q 039798 22 ILLAIDDFFNRYPFFVATCTFIWLVVIPLTQEYLSKCKFISA 63 (229)
Q Consensus 22 ~~~~~~~F~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~Is~ 63 (229)
|+.++.+|--+-.++.+..+.+...+|..+|...++-|....
T Consensus 1 ML~~if~lYlqgL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~e 42 (72)
T PF13268_consen 1 MLVEIFSLYLQGLLLSSILVLLVSGIWILWRALRKKDKTAKE 42 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 456777777777777766555555556666654444444433
No 90
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=39.55 E-value=36 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=13.8
Q ss_pred EEEEcCCChH-HHHHHHH----HHHcCCc
Q 039798 131 VCILDNFDGN-SLKAAEL----LYKNGFK 154 (229)
Q Consensus 131 Ivvcc~sG~R-S~~Aa~~----L~k~Gf~ 154 (229)
|+++|.+|.. |..++.. +.++|++
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 3456669965 4444354 4557865
No 91
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=39.28 E-value=22 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 039798 19 LESILLAIDDFFNRYPFFVATCTFIWLVVIPLTQE 53 (229)
Q Consensus 19 ~~~~~~~~~~F~~~~~~l~~~~~~~~~l~~~~~~~ 53 (229)
+.+|++++++|+.+ .+....+.+++.++...+++
T Consensus 4 ~~~~~~~ii~~lP~-iv~AilIl~vG~~va~~v~~ 37 (53)
T PF05552_consen 4 LSGMLDQIIAYLPN-IVGAILILIVGWWVAKFVRK 37 (53)
T ss_dssp ---------GGHCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45677888877763 22222244445555555544
No 92
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=38.72 E-value=46 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=26.1
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCc-ceEEccCccc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFK-EAYAISGGVR 164 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~-~Vy~L~GGi~ 164 (229)
.+++||-.+-.||..|..+|++..-+ ++.....|+.
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~ 38 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTS 38 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCC
Confidence 46777764556899999999886433 5667788887
No 93
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=38.01 E-value=35 Score=26.14 Aligned_cols=24 Identities=4% Similarity=-0.052 Sum_probs=15.7
Q ss_pred EEEEcCCChHHHHHHHHHH----HcCCc
Q 039798 131 VCILDNFDGNSLKAAELLY----KNGFK 154 (229)
Q Consensus 131 Ivvcc~sG~RS~~Aa~~L~----k~Gf~ 154 (229)
|++||.+|..|...++.++ +.|.+
T Consensus 6 IllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 6 IYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 5567779988877774443 45654
No 94
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=37.84 E-value=50 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=24.6
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
.++|||-..-.||..|..+|++.. .++..-..|..
T Consensus 4 ~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~ 38 (144)
T PRK11391 4 SILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVH 38 (144)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEccccc
Confidence 577777655579999999998764 23445567776
No 95
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=37.33 E-value=93 Score=24.79 Aligned_cols=29 Identities=17% Similarity=-0.044 Sum_probs=16.1
Q ss_pred EEEEEcCCChH-H--HHHHHHHHHcCCcceEEc
Q 039798 130 VVCILDNFDGN-S--LKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 130 vIvvcc~sG~R-S--~~Aa~~L~k~Gf~~Vy~L 159 (229)
.+.+|- +|.| . ..++-.+.=.|.+++|++
T Consensus 92 ~lh~~i-aGGRK~Ms~~~~~a~sl~g~Drl~Hv 123 (124)
T TIGR03642 92 RIIVNI-SGGRKIMTIILALYAQLLFEDEVYHI 123 (124)
T ss_pred eEEEEe-cCCHHHHHHHHHHHHHHhCCcceeee
Confidence 455566 5555 3 333434444567778875
No 96
>PRK10126 tyrosine phosphatase; Provisional
Probab=37.05 E-value=47 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=24.7
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
.++|||-..-.||..|..+|++.+ ..+.+-..|+.
T Consensus 4 ~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~ 38 (147)
T PRK10126 4 NILVVCVGNICRSPTAERLLQRYH-PELKVESAGLG 38 (147)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeecc
Confidence 577777645579999999999865 33445566776
No 97
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=36.93 E-value=53 Score=25.78 Aligned_cols=35 Identities=17% Similarity=-0.051 Sum_probs=23.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
++|||-.+-.||..|..++++..=.++.....|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35666555578999998888753244555666765
No 98
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=36.26 E-value=1.2e+02 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHhhchHH
Q 039798 15 GKIDLESILLAIDDFFNRYPFF 36 (229)
Q Consensus 15 ~~~~~~~~~~~~~~F~~~~~~l 36 (229)
+.+|+++|+++|.+|+.-+..-
T Consensus 51 ~~~~~~t~lqNIvd~lTGpig~ 72 (120)
T PRK13857 51 GGTDPATMVNNICTFILGPFGQ 72 (120)
T ss_pred CCCCHHHHHHHHHHHHhchHHH
Confidence 4568899999999999987553
No 99
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=35.47 E-value=83 Score=28.24 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEc
Q 039798 115 FLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 115 f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
.++.+.+.+++ +..+ ++||..=....+..+.|++.||.+.-..
T Consensus 177 ~le~~~~~Lkp-gg~~-~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 177 VLEHVSDALKP-GGVV-VVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred HHHHHHHHhCC-CcEE-EEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 34555444542 4444 4555577789999999999999875433
No 100
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=35.42 E-value=26 Score=28.98 Aligned_cols=65 Identities=11% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHhhchHHHHH-HHH-HHHHHHHHHHHhhCCCcccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCC
Q 039798 27 DDFFNRYPFFVAT-CTF-IWLVVIPLTQEYLSKCKFISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPN 94 (229)
Q Consensus 27 ~~F~~~~~~l~~~-~~~-~~~l~~~~~~~~~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gain 94 (229)
.+|+.+||.|+++ .+. +..++..+...++ +...+-.-.+.=.+. ..+.++||++.-.|+-.|...
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm~~spy~-G~~s~~~ftv~fv~m--~~~llfDI~P~YrfEDIdvLD 95 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALMYYSPYF-GLGSVWGFTVFFVVM--AAFLLFDIKPRYRFEDIDVLD 95 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHH--HHHHHhhccceeeecccCeeE
Confidence 4799999998844 222 2222222222222 111111122211121 246789999988888445554
No 101
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=35.25 E-value=1.2e+02 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=25.3
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhh--hcCCCC
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMV--SLGSPN 94 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~--i~Gain 94 (229)
..+...++.+.+ .+.++.+||+|+..+|. ..|++.
T Consensus 136 tg~gKt~Ll~~L-~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 136 TGSGKTELLHAL-ANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCcCHHHHHHHH-hcCCCeEEECCchHHhcCcccCCCC
Confidence 445566777766 44568999999999998 345554
No 102
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=34.84 E-value=87 Score=21.93 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHhhCC
Q 039798 23 LLAIDDFFNRYPFFVAT-CTFIWLVVIPLTQEYLSK 57 (229)
Q Consensus 23 ~~~~~~F~~~~~~l~~~-~~~~~~l~~~~~~~~~~~ 57 (229)
||.+...+.+|-+..+. ++-+.|++-.++.+++.+
T Consensus 1 me~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~ 36 (60)
T PF03818_consen 1 MEMIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTR 36 (60)
T ss_pred ChHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56677888888887766 444456665666655543
No 103
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=34.25 E-value=48 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=11.9
Q ss_pred EEEcCCC-hHHHHHHHHHHH
Q 039798 132 CILDNFD-GNSLKAAELLYK 150 (229)
Q Consensus 132 vvcc~sG-~RS~~Aa~~L~k 150 (229)
+++|.+| ..|..++..|++
T Consensus 3 l~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 3 LVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred EEECCCcHhHHHHHHHHHHH
Confidence 4566588 466666666654
No 104
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.47 E-value=87 Score=24.51 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=24.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcceEEcc
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFKEAYAIS 160 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~ 160 (229)
-+++.. .|..+..++..|.+.|+++++...
T Consensus 14 ~vlviG-aGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 14 RVLVIG-AGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred EEEEEC-CHHHHHHHHHHHHHcCCCEEEEEE
Confidence 345566 788999999999999999887664
No 105
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=33.39 E-value=1.9e+02 Score=21.14 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=37.4
Q ss_pred CcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCeeeeCCccccccchhhHHHhhhc
Q 039798 128 NTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPAVHILPKKKKKKTKTSQQVGING 202 (229)
Q Consensus 128 ~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~~~~~~~~~~~~~~~~~~~~~~g 202 (229)
-+++ |-|.+|..+..+...|.+.|.+ +..+...-. +.- |-....+|.. .....+.+.++..+
T Consensus 22 ~kiv-vD~~~G~~~~~~~~ll~~lg~~-~~~~n~~~d---~~f-------~~~~~p~p~~-~~l~~~~~~v~~~~ 83 (104)
T PF02879_consen 22 LKIV-VDCMNGAGSDILPRLLERLGCD-VIELNCDPD---PDF-------PNQHAPNPEE-ESLQRLIKIVRESG 83 (104)
T ss_dssp CEEE-EE-TTSTTHHHHHHHHHHTTCE-EEEESSS-S---TTG-------TTTSTSSTST-TTTHHHHHHHHHST
T ss_pred CEEE-EECCCCHHHHHHHHHHHHcCCc-EEEEecccc---ccc-------cccccccccc-chhHHHHHHhhccC
Confidence 3555 5555999999999999999995 444544444 322 2111234544 45666777777665
No 106
>PHA02657 hypothetical protein; Provisional
Probab=33.05 E-value=56 Score=24.62 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=13.8
Q ss_pred CCcccccccccCCC---CCCHHHHHH
Q 039798 2 ASETAVSSTETASG---KIDLESILL 24 (229)
Q Consensus 2 ~~~~~~~~~~~~~~---~~~~~~~~~ 24 (229)
|.|+|.+.-..++- |||.|++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~imV 29 (95)
T PHA02657 4 ATEAPLTTLPADNYYYMKINFESILV 29 (95)
T ss_pred cccCCcccccCCceEEEEecchhhhH
Confidence 45666533222222 899999974
No 107
>PRK12361 hypothetical protein; Provisional
Probab=32.89 E-value=1.2e+02 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=13.6
Q ss_pred cEEEEEcCCCh-HHHH-HHHHHHH
Q 039798 129 TVVCILDNFDG-NSLK-AAELLYK 150 (229)
Q Consensus 129 ~vIvvcc~sG~-RS~~-Aa~~L~k 150 (229)
..|+|||..|. ||.. ++..|..
T Consensus 176 ~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 176 KSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHH
Confidence 34678998884 6543 4555543
No 108
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=32.63 E-value=1.5e+02 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCChH---HHHHHHHHHHcCCcceEEc
Q 039798 127 INTVVCILDNFDGN---SLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 127 ~~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~L 159 (229)
+.++++ .+..+.. -..+-..+++.||+++...
T Consensus 99 ~~~V~I-~aD~~~~~~~vv~vmd~l~~aG~~~v~l~ 133 (141)
T PRK11267 99 DTTIFF-RADKTVDYETLMKVMDTLHQAGYLKIGLV 133 (141)
T ss_pred CceEEE-EcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 445554 4434433 4456677889999987554
No 109
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=31.39 E-value=71 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCcEEEEE---cCCChH--HHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCe
Q 039798 127 INTVVCIL---DNFDGN--SLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPA 180 (229)
Q Consensus 127 ~~~vIvvc---c~sG~R--S~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~ 180 (229)
+.+.|+++ |..|.+ +....+.|++.|++-. .+.=|-. +|.. ...|+|+-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~-fvaTGQT---Gimi-a~~Gv~iD 164 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAG-FVATGQT---GIMI-AGYGVPID 164 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EE-EEE-SHH---HHHC-HSEC--GG
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCce-EEecCCc---eEEE-ecCCeecc
Confidence 34555554 456765 6788899999999744 4444566 8884 56677653
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.62 E-value=66 Score=25.61 Aligned_cols=18 Identities=17% Similarity=0.026 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 039798 40 CTFIWLVVIPLTQEYLSK 57 (229)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~ 57 (229)
++.+++|++++++|+.++
T Consensus 77 vIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 555556777777775554
No 111
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.58 E-value=33 Score=24.79 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhhchHH
Q 039798 18 DLESILLAIDDFFNRYPFF 36 (229)
Q Consensus 18 ~~~~~~~~~~~F~~~~~~l 36 (229)
.+|+++++|-.|+.+||+|
T Consensus 60 t~eeLv~NIY~~i~Enp~f 78 (78)
T COG4844 60 TPEELVENIYTFIEENPMF 78 (78)
T ss_pred CHHHHHHHHHHHHhccCCC
Confidence 4789999999999999985
No 112
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.29 E-value=96 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEEcCCCh--HHHHHHHHHHHcCCcc
Q 039798 130 VVCILDNFDG--NSLKAAELLYKNGFKE 155 (229)
Q Consensus 130 vIvvcc~sG~--RS~~Aa~~L~k~Gf~~ 155 (229)
.|-|...+|. .+..++..|++.||+.
T Consensus 5 ~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 5 RVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred EEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 3455655664 5889999999999984
No 113
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=29.04 E-value=64 Score=29.08 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred eccccCcchhHHHHH---HhhCCCCCC--cEEEEEcCCChHHHHHHHHHHHcCCc--ceEEccCccc
Q 039798 105 VEFVEGDENGFLNNV---LSNFADPIN--TVVCILDNFDGNSLKAAELLYKNGFK--EAYAISGGVR 164 (229)
Q Consensus 105 iP~~~~~~~~f~~~l---~~~~~d~~~--~vIvvcc~sG~RS~~Aa~~L~k~Gf~--~Vy~L~GGi~ 164 (229)
.|+...+...|+..+ .++++.... .+.+|..++.-...++-+.|+..|.. .++.| ||+.
T Consensus 159 ~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFL-gG~~ 224 (264)
T PF06189_consen 159 KPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFL-GGLP 224 (264)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHh-CCCc
Confidence 444444455666544 445432122 34566777888889999999999984 56666 7776
No 114
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.84 E-value=79 Score=30.90 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=41.4
Q ss_pred CcEEEEEcCCChHHHHHHHHHHHcCCcceEEcc-----CcccCccccHhhhhcCCC-Cee---eeCCccccccchhhHHH
Q 039798 128 NTVVCILDNFDGNSLKAAELLYKNGFKEAYAIS-----GGVRGKKGWLAIQETLLP-PAV---HILPKKKKKKTKTSQQV 198 (229)
Q Consensus 128 ~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~-----GGi~g~~aW~~~~~agLP-l~~---~~~~~~~~~~~~~~~~~ 198 (229)
++-|+|.. .|.....||+.|.++||+ |-+|+ ||=- ..|+ ..+.+ +.. +..+....-...+.+|+
T Consensus 15 ~~~VIVIG-AGiaGLsAArqL~~~G~~-V~VLEARdRvGGRI--~t~~---~~~~~~vd~Gas~~~g~~~npl~~l~~ql 87 (501)
T KOG0029|consen 15 KKKVIVIG-AGLAGLSAARQLQDFGFD-VLVLEARDRVGGRI--YTFK---SEGGDHVDLGASVLTGVYNNPLALLSKQL 87 (501)
T ss_pred CCcEEEEC-CcHHHHHHHHHHHHcCCc-eEEEeccCCcCcee--EEEe---cCCCCeeecCCceecCcCccHHHHHHHHh
Confidence 33445565 899999999999999997 66664 4432 0455 44444 111 13444444466677777
Q ss_pred hhhc
Q 039798 199 GING 202 (229)
Q Consensus 199 ~~~g 202 (229)
+++=
T Consensus 88 gl~~ 91 (501)
T KOG0029|consen 88 GLEL 91 (501)
T ss_pred Cccc
Confidence 6654
No 115
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=27.74 E-value=1.3e+02 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred CcEEEEEcCCC---hHHHHHHHHHHHcCCcceEEc
Q 039798 128 NTVVCILDNFD---GNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 128 ~~vIvvcc~sG---~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
+++++ +|..| .....+|+.|.+.|.+ ||.+
T Consensus 46 ~~v~v-l~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 46 GHVII-FCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred CeEEE-EECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 44554 54355 4588999999887764 7765
No 116
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=27.36 E-value=72 Score=26.85 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHhCCCCcEEEeecChhhhhhcCCCCCcccc--c--ccceeccccCcchh------HHHHHHhhCCCCCCcEEEEE
Q 039798 65 DAFQKLRNDPNAQLLDIRNKKTMVSLGSPNLKSLK--K--SVVQVEFVEGDENG------FLNNVLSNFADPINTVVCIL 134 (229)
Q Consensus 65 ea~~~l~~~~~avlIDVR~~~Ef~i~Gainip~~~--k--gav~iP~~~~~~~~------f~~~l~~~~~d~~~~vIvvc 134 (229)
++.+ +.+..-..+|=.-+..|+...+.+++.-.- . ..+++|..+...++ +..++...+. ..++ |+++
T Consensus 63 DL~~-Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~-~g~~-V~vH 139 (168)
T PF05706_consen 63 DLER-LKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLE-NGRK-VLVH 139 (168)
T ss_dssp HHHH-HHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHH-TT---EEEE
T ss_pred HHHH-HHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHH-cCCE-EEEE
Confidence 3444 433333345557777787754443321100 1 24456654422222 2233433333 2344 5578
Q ss_pred cCCC-hHH-HHHHHHHHHcC
Q 039798 135 DNFD-GNS-LKAAELLYKNG 152 (229)
Q Consensus 135 c~sG-~RS-~~Aa~~L~k~G 152 (229)
|++| .|+ ..||..|.+.|
T Consensus 140 C~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHc
Confidence 8777 465 55777887765
No 117
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=27.24 E-value=91 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCc
Q 039798 127 INTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGG 162 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GG 162 (229)
..+-|+|.. .|.....||..|.++||.++.+++|.
T Consensus 20 ~~~kIvIIG-AG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIG-AGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEEC-CchHHHHHHHHHHHhCCceEEEEEec
Confidence 334455665 89999999999999999999888764
No 118
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=27.07 E-value=92 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHhhCC
Q 039798 16 KIDLESILLAIDDFFNRYPFFVATCT-FIWLVVIPLTQEYLSK 57 (229)
Q Consensus 16 ~~~~~~~~~~~~~F~~~~~~l~~~~~-~~~~l~~~~~~~~~~~ 57 (229)
.-++|+|+ .+|+.+|.++..+.+ +.+=.+...++..+++
T Consensus 5 ~~~le~II---~~Fled~~~i~~I~~d~Gfd~l~~~lk~mlkk 44 (249)
T PF04583_consen 5 DEDLEDII---SQFLEDHALIMSIATDLGFDVLESALKSMLKK 44 (249)
T ss_pred hhhHHHHH---HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34677774 789999999885533 3333444444444333
No 119
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=26.82 E-value=78 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.4
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
.+.++|...-+||+.|-..|++.||. |...
T Consensus 7 ~~avvC~sN~NRSMeaH~~L~~~G~~-v~S~ 36 (195)
T KOG2424|consen 7 RVAVVCASNQNRSMEAHNILKKKGLN-VRSF 36 (195)
T ss_pred eeeeeehhcccchHHHHHHHHHcCCc-ceee
Confidence 45566775557999999999999996 5544
No 120
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=26.51 E-value=69 Score=22.10 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHhhchH
Q 039798 16 KIDLESILLAIDDFFNRYPF 35 (229)
Q Consensus 16 ~~~~~~~~~~~~~F~~~~~~ 35 (229)
+.||++|+....+|..+||.
T Consensus 41 ~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 41 KYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp SSSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHCcC
Confidence 67999999999999999984
No 121
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=26.27 E-value=1e+02 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.007 Sum_probs=28.1
Q ss_pred CcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 128 NTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 128 ~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
.+++|||-.+-.||..|-.++++..=.++.....|..
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~ 39 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTG 39 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccC
Confidence 4577777655579999999999864467778888876
No 122
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.04 E-value=48 Score=26.04 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.9
Q ss_pred hHHHHH
Q 039798 34 PFFVAT 39 (229)
Q Consensus 34 ~~l~~~ 39 (229)
|+|+++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 555533
No 123
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=25.79 E-value=1.4e+02 Score=24.52 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHhhCCCCCCcEEEEEcCCCh--HHHHHHHHHHH---cCCcceEEccCccc
Q 039798 118 NVLSNFADPINTVVCILDNFDG--NSLKAAELLYK---NGFKEAYAISGGVR 164 (229)
Q Consensus 118 ~l~~~~~d~~~~vIvvcc~sG~--RS~~Aa~~L~k---~Gf~~Vy~L~GGi~ 164 (229)
.+++.++ ++..+++++..|. .|...|+.|.+ .|..++..+.||-.
T Consensus 59 ~il~~i~--~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~ 108 (155)
T PF02590_consen 59 RILKKIP--PNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGAD 108 (155)
T ss_dssp HHHCTSH--TTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTT
T ss_pred HHHhhcc--CCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 3444443 3344556776884 59999999987 68878999999998
No 124
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=25.73 E-value=1.2e+02 Score=28.86 Aligned_cols=30 Identities=10% Similarity=-0.113 Sum_probs=23.8
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEc
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
+.++++. .|.-+..++..|.+.|+.+++..
T Consensus 182 kkvlviG-aG~~a~~va~~L~~~g~~~I~V~ 211 (414)
T PRK13940 182 KNVLIIG-AGQTGELLFRHVTALAPKQIMLA 211 (414)
T ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCCEEEEE
Confidence 3455666 79999999999999999877655
No 125
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=25.43 E-value=19 Score=36.02 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=51.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhhh---hcCCCCCcccccccceeccccCcchhH--HHHHHhhCCCCCCcEEEE
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTMV---SLGSPNLKSLKKSVVQVEFVEGDENGF--LNNVLSNFADPINTVVCI 133 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef~---i~Gainip~~~kgav~iP~~~~~~~~f--~~~l~~~~~d~~~~vIvv 133 (229)
..|++++...+ +...++|.|...||. +.+++|+|+. ..+.+.+.+ .... ... ..+.+++
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~~~l~~~-~~~---~~~~~v~ 685 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWLRFLPGI-VCS---EGKKCVV 685 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHhhcchHh-HHh---hCCeEEE
Confidence 45555555542 456799999999999 4677777751 111111111 0111 111 2233433
Q ss_pred EcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 134 LDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 134 cc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
+......++.-...+..+-+.+...+.+|++ +.+
T Consensus 686 ~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~---~~~ 719 (725)
T KOG1093|consen 686 VGKNDKHAAERLTELYVMKVPRICILHDGFN---NID 719 (725)
T ss_pred eccchHHHHHHhhHHHHhcccHHHHHHHHHh---hcC
Confidence 3323344666666666666777788888888 555
No 126
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=25.28 E-value=1e+02 Score=28.84 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCChHH---HHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCCCe
Q 039798 127 INTVVCILDNFDGNS---LKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLPPA 180 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS---~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLPl~ 180 (229)
.+|.|++|+.+|..+ ..+-+.+.+.|-++||.+.-++. +=- .+++|+.
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~a---AAI---Gaglpi~ 150 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMA---AAI---GAGLPIM 150 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHH---HHh---cCCCccc
Confidence 467788999888654 33455677899999999999998 544 8999974
No 127
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.18 E-value=2e+02 Score=22.72 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCcceEE
Q 039798 141 SLKAAELLYKNGFKEAYA 158 (229)
Q Consensus 141 S~~Aa~~L~k~Gf~~Vy~ 158 (229)
-..+-..++++||+++..
T Consensus 119 vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 119 IIKALNLLHSAGVKSVGL 136 (141)
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 456677888999998754
No 128
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.15 E-value=1.3e+02 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=18.3
Q ss_pred CcEEEEEcCCC-hHH-HHHHHHHHHcCCc
Q 039798 128 NTVVCILDNFD-GNS-LKAAELLYKNGFK 154 (229)
Q Consensus 128 ~~vIvvcc~sG-~RS-~~Aa~~L~k~Gf~ 154 (229)
...|+|+|..| .|| ..+|..|.+.|++
T Consensus 170 g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 170 NRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 34567899888 464 5566777777774
No 129
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=25.09 E-value=1.4e+02 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=24.8
Q ss_pred CcEEEEEcCCChHHHHHHHHHHHcCCcceEEc
Q 039798 128 NTVVCILDNFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 128 ~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
..-+++.. .|.-+..+++.|.++|+.+++..
T Consensus 174 ~k~vLvIG-aGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 174 KASLLFIG-YSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred CCEEEEEc-ccHHHHHHHHHHHHcCCCEEEEE
Confidence 34455676 89999999999999999877654
No 130
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=24.93 E-value=51 Score=23.81 Aligned_cols=31 Identities=32% Similarity=0.249 Sum_probs=17.4
Q ss_pred hhCCCcccCHHHHHHHHhCCCCcEEEeecChh
Q 039798 54 YLSKCKFISAIDAFQKLRNDPNAQLLDIRNKK 85 (229)
Q Consensus 54 ~~~~~~~Is~~ea~~~l~~~~~avlIDVR~~~ 85 (229)
.....+.|+-.++.+.+ +.++..=|.|.+..
T Consensus 23 ~~~~~~~i~YS~F~~~l-~~g~V~~V~i~~~~ 53 (110)
T PF06480_consen 23 NNSQTKEISYSEFLQML-EKGNVKKVVIQNDK 53 (110)
T ss_dssp ---SSEE--HHHHHHTG-GGT-EEEEEEETTT
T ss_pred ccCCCcEECHHHHHHHH-HcCCEEEEEEECCE
Confidence 34567899999999976 45566555565443
No 131
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=24.89 E-value=73 Score=29.37 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=25.3
Q ss_pred CCcccCHHHHHHHHhC-----CCCcEEEeecChhhhhh
Q 039798 57 KCKFISAIDAFQKLRN-----DPNAQLLDIRNKKTMVS 89 (229)
Q Consensus 57 ~~~~Is~~ea~~~l~~-----~~~avlIDVR~~~Ef~i 89 (229)
....+++.++.+++.. ..+.++||||++. |++
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~ 311 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRL 311 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEE
Confidence 4577999999987732 3578999999988 885
No 132
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.72 E-value=1.2e+02 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=19.0
Q ss_pred CcEEEEEcCCC---hHHHHHHHHHHHcCCc
Q 039798 128 NTVVCILDNFD---GNSLKAAELLYKNGFK 154 (229)
Q Consensus 128 ~~vIvvcc~sG---~RS~~Aa~~L~k~Gf~ 154 (229)
.+++++|- .| .....+|+.|...||+
T Consensus 61 ~~V~VlcG-~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 61 PRVLLVCG-PGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CeEEEEEC-CCCCchhHHHHHHHHHHCCCe
Confidence 35555444 55 4588999999999996
No 133
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=24.31 E-value=1.5e+02 Score=29.51 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=19.0
Q ss_pred CcEEEEEcCCChH---HHHHHHHHHHcCCc
Q 039798 128 NTVVCILDNFDGN---SLKAAELLYKNGFK 154 (229)
Q Consensus 128 ~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~ 154 (229)
.++++ +|..|+. ...+|+.|...||+
T Consensus 136 ~~VlV-lcGpGNNGGDGLVaAR~L~~~G~~ 164 (544)
T PLN02918 136 SRVLA-ICGPGNNGGDGLVAARHLHHFGYK 164 (544)
T ss_pred CEEEE-EECCCcCHHHHHHHHHHHHHCCCc
Confidence 34554 5546654 77899999999997
No 134
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.13 E-value=97 Score=23.82 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=28.4
Q ss_pred cEEEEEcCCChH---HHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCC
Q 039798 129 TVVCILDNFDGN---SLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 129 ~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
.+|++|+..+.. .....+.|++.|+.++..+.||-..+..+....++|+-
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 466777744432 34456677788887777777875422222222267754
No 135
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=24.13 E-value=92 Score=27.58 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=28.2
Q ss_pred cEEEEEcCCChHHHHHHHHHHHcCCcceEEccCcccCccccH
Q 039798 129 TVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVRGKKGWL 170 (229)
Q Consensus 129 ~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~ 170 (229)
-.+++++..=....+.++.|++.||.++..++==.+ .|.
T Consensus 140 G~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl~R---~~~ 178 (247)
T PF08704_consen 140 GRICCFSPCIEQVQKTVEALREHGFTDIETVEVLLR---EWE 178 (247)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEEEE---EEE
T ss_pred ceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEEee---EEE
Confidence 344444434457889999999999998877765556 786
No 136
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=23.41 E-value=4.6e+02 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=15.4
Q ss_pred CCcEEEEEcCCChH---HHHHHHHHHHc
Q 039798 127 INTVVCILDNFDGN---SLKAAELLYKN 151 (229)
Q Consensus 127 ~~~vIvvcc~sG~R---S~~Aa~~L~k~ 151 (229)
+.++.++....|.+ +.+.++.|++.
T Consensus 90 ~~~IdLii~TpGG~v~AA~~I~~~l~~~ 117 (285)
T PF01972_consen 90 DKPIDLIIHTPGGLVDAAEQIARALREH 117 (285)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHHhC
Confidence 45665555556654 66777777765
No 137
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=22.14 E-value=96 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.2
Q ss_pred cccCHHHHHHHHhCCCCcEEEeecChhhh
Q 039798 59 KFISAIDAFQKLRNDPNAQLLDIRNKKTM 87 (229)
Q Consensus 59 ~~Is~~ea~~~l~~~~~avlIDVR~~~Ef 87 (229)
..||.+++.+++.+.++..++|..+.++.
T Consensus 18 ~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 18 SYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred eeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 57999999998888888999999987764
No 138
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.93 E-value=3e+02 Score=20.05 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHhhchHHHH
Q 039798 17 IDLESILLAIDDFFNRYPFFVA 38 (229)
Q Consensus 17 ~~~~~~~~~~~~F~~~~~~l~~ 38 (229)
||.-.-.+.+..|+..+|.-+.
T Consensus 2 ~D~k~w~~~~v~~vAkdP~~Fl 23 (74)
T PF15086_consen 2 IDVKAWASYIVEWVAKDPYEFL 23 (74)
T ss_pred cchHHHHHHHHHHHHcChHHHH
Confidence 5666677788899999987443
No 139
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.89 E-value=1.5e+02 Score=23.42 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=30.5
Q ss_pred CcEEEEEcCCChH---HHHHHHHHHHcCCcceEEccCcccCccccHhhhhcCCC
Q 039798 128 NTVVCILDNFDGN---SLKAAELLYKNGFKEAYAISGGVRGKKGWLAIQETLLP 178 (229)
Q Consensus 128 ~~vIvvcc~sG~R---S~~Aa~~L~k~Gf~~Vy~L~GGi~g~~aW~~~~~agLP 178 (229)
-.+|++|.-.+.. -....+.|++.|..++..+.||...+..+....++|+-
T Consensus 54 adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 54 VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 3466666644422 34566778888876777778886644334433366664
No 140
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=21.82 E-value=2e+02 Score=25.17 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=8.8
Q ss_pred CcEEEeecChhhhh
Q 039798 75 NAQLLDIRNKKTMV 88 (229)
Q Consensus 75 ~avlIDVR~~~Ef~ 88 (229)
.-.+=|||+++|..
T Consensus 81 g~~l~DI~t~~d~~ 94 (224)
T PF09623_consen 81 GLPLDDIRTEEDNE 94 (224)
T ss_pred CccccccCCHHHHH
Confidence 34466777777665
No 141
>PRK10565 putative carbohydrate kinase; Provisional
Probab=21.61 E-value=1.7e+02 Score=28.66 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCh---HHHHHHHHHHHcCCc
Q 039798 127 INTVVCILDNFDG---NSLKAAELLYKNGFK 154 (229)
Q Consensus 127 ~~~vIvvcc~sG~---RS~~Aa~~L~k~Gf~ 154 (229)
.++++++|- .|+ ....+|+.|.+.||+
T Consensus 60 ~~~v~vl~G-~GNNGGDG~v~AR~L~~~G~~ 89 (508)
T PRK10565 60 ARHWLVLCG-HGNNGGDGYVVARLAQAAGID 89 (508)
T ss_pred CCeEEEEEc-CCCchHHHHHHHHHHHHCCCc
Confidence 345555444 554 578999999999996
No 142
>PRK13664 hypothetical protein; Provisional
Probab=21.38 E-value=75 Score=22.16 Aligned_cols=26 Identities=8% Similarity=0.354 Sum_probs=14.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHH
Q 039798 27 DDFFNRYPFFVATCTFIWLVVIPLTQE 53 (229)
Q Consensus 27 ~~F~~~~~~l~~~~~~~~~l~~~~~~~ 53 (229)
|+|+.++|.++.++++++++ +..++.
T Consensus 1 M~WLadyWWilill~lvG~i-~N~iK~ 26 (62)
T PRK13664 1 MDWLAKYWWILVLVFLVGVL-LNVIKD 26 (62)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 36778888765554444433 344443
No 143
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=21.34 E-value=1.2e+02 Score=30.28 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 127 INTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
+.|+| |+.+.-..+...|+.|.+.||+ ++.|-||-.
T Consensus 517 ~ppiI-IFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 517 DPPII-IFVNTKKGADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred CCCEE-EEEechhhHHHHHHHHhhccce-EEEeeCCcc
Confidence 34444 4444667788999999999995 999999876
No 144
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.99 E-value=3.1e+02 Score=19.57 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=25.1
Q ss_pred HHHHhhCCCCCCcEEEEEcCC-ChHHHHHHHHHHHcCCcceEEcc
Q 039798 117 NNVLSNFADPINTVVCILDNF-DGNSLKAAELLYKNGFKEAYAIS 160 (229)
Q Consensus 117 ~~l~~~~~d~~~~vIvvcc~s-G~RS~~Aa~~L~k~Gf~~Vy~L~ 160 (229)
..+.++++ ..++.+.+... .-.-..+.+.|.+.|+++++.+.
T Consensus 24 ~~l~~~~~--~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 24 HNLAESLP--DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred HHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 34434443 34444333322 34567788889999999987664
No 145
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.92 E-value=1.2e+02 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=10.6
Q ss_pred EEEEcCCChH-HHHHHHHHHH
Q 039798 131 VCILDNFDGN-SLKAAELLYK 150 (229)
Q Consensus 131 Ivvcc~sG~R-S~~Aa~~L~k 150 (229)
|+++|.+|.. |..++..+++
T Consensus 3 ilvvCg~G~gtS~ml~~ki~~ 23 (87)
T cd05567 3 IVFACDAGMGSSAMGASVLRK 23 (87)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 3455658864 4554544443
No 146
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=20.63 E-value=2.7e+02 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=29.0
Q ss_pred hHHHHHHhhCCCCCCcEEEEEcCCChHHHHHHHHHHHcCCcceEEcc
Q 039798 114 GFLNNVLSNFADPINTVVCILDNFDGNSLKAAELLYKNGFKEAYAIS 160 (229)
Q Consensus 114 ~f~~~l~~~~~d~~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~ 160 (229)
.|...+.+...+.....+++.- .|..+..++..|.+.|.++++.+.
T Consensus 113 G~~~~l~~~~~~~~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 113 GFAESFRRGLPDASLERVVQLG-AGGAGAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred HHHHHHHhhccCccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEC
Confidence 4555553322111223344565 677888899999999998887764
No 147
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=20.52 E-value=2.1e+02 Score=20.83 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=10.4
Q ss_pred HHHHHhhchHHHHH
Q 039798 26 IDDFFNRYPFFVAT 39 (229)
Q Consensus 26 ~~~F~~~~~~l~~~ 39 (229)
.-.|+.+||.+.++
T Consensus 44 aGafl~e~w~iaal 57 (75)
T PF05052_consen 44 AGAFLGEHWVIAAL 57 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34788999887755
No 148
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=20.49 E-value=1e+02 Score=28.88 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=17.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc
Q 039798 130 VVCILDNFDGNSLKAAELLYKNGFK 154 (229)
Q Consensus 130 vIvvcc~sG~RS~~Aa~~L~k~Gf~ 154 (229)
+++-. .+|.-|..||.+|+++||+
T Consensus 3 V~vam-SGGVDSsvaA~LLk~~G~~ 26 (356)
T PF03054_consen 3 VLVAM-SGGVDSSVAAALLKEQGYD 26 (356)
T ss_dssp EEEE---SSHHHHHHHHHHHHCT-E
T ss_pred EEEEc-cCCHHHHHHHHHHHhhccc
Confidence 44434 4778999999999999996
No 149
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.37 E-value=2.5e+02 Score=20.82 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=23.7
Q ss_pred hhHHHHHHhhCCCCCCcEEEEEcCCChHH-HHHHHHHHHcCCc
Q 039798 113 NGFLNNVLSNFADPINTVVCILDNFDGNS-LKAAELLYKNGFK 154 (229)
Q Consensus 113 ~~f~~~l~~~~~d~~~~vIvvcc~sG~RS-~~Aa~~L~k~Gf~ 154 (229)
.++++.+.+. ..+++++-. ++.++ ...++.|+++||.
T Consensus 20 ~e~l~~L~~~----g~~~~~lTN-ns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRER----GKPVVFLTN-NSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHT----TSEEEEEES--SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHc----CCCEEEEeC-CCCCCHHHHHHHHHhcCcC
Confidence 3455565432 567776665 55555 7888889999996
No 150
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=20.25 E-value=2.2e+02 Score=21.06 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCcEEEEEc--CCChHHHHHHHHHHHcCCcceEE
Q 039798 127 INTVVCILD--NFDGNSLKAAELLYKNGFKEAYA 158 (229)
Q Consensus 127 ~~~vIvvcc--~sG~RS~~Aa~~L~k~Gf~~Vy~ 158 (229)
++.++++-+ .+|..-..+++.|++.|.+.+..
T Consensus 88 gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 88 GKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 556665432 69999999999999999886543
No 151
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=20.20 E-value=2.5e+02 Score=25.78 Aligned_cols=34 Identities=24% Similarity=0.091 Sum_probs=22.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEeecChhhhhhcCCCCC
Q 039798 60 FISAIDAFQKLRNDPNAQLLDIRNKKTMVSLGSPNL 95 (229)
Q Consensus 60 ~Is~~ea~~~l~~~~~avlIDVR~~~Ef~i~Gaini 95 (229)
.+|++.+.+.+ ..++.+++|.|+...- +.+++++
T Consensus 5 ~~s~~wlnr~l-~~~nllllDCRses~~-i~~A~~v 38 (343)
T KOG1717|consen 5 SKSVAWLNRQL-ELGNLLLLDCRSESSH-IESAINV 38 (343)
T ss_pred HHHHHHHHhhc-ccCceEEEecCCccch-hhhhhhh
Confidence 46677777755 5567899999994432 4555553
No 152
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=20.18 E-value=3.4e+02 Score=19.66 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCChHHHHHHHHHHHcCCcceEEccCccc
Q 039798 127 INTVVCILDNFDGNSLKAAELLYKNGFKEAYAISGGVR 164 (229)
Q Consensus 127 ~~~vIvvcc~sG~RS~~Aa~~L~k~Gf~~Vy~L~GGi~ 164 (229)
+.++++ +|.+-......++.|.+.++ .++.+.|++.
T Consensus 28 ~~~~lv-f~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 63 (131)
T cd00079 28 GGKVLI-FCPSKKMLDELAELLRKPGI-KVAALHGDGS 63 (131)
T ss_pred CCcEEE-EeCcHHHHHHHHHHHHhcCC-cEEEEECCCC
Confidence 455555 44477778888999988766 4778888875
No 153
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.04 E-value=4.1e+02 Score=20.33 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=35.3
Q ss_pred CcEEEeecChhhhhhcCCCCCcccccccceeccccCcchhHHHHHHhhCCCCCCcEEEEEcCCCh---HHHHHHHHHHHc
Q 039798 75 NAQLLDIRNKKTMVSLGSPNLKSLKKSVVQVEFVEGDENGFLNNVLSNFADPINTVVCILDNFDG---NSLKAAELLYKN 151 (229)
Q Consensus 75 ~avlIDVR~~~Ef~i~Gainip~~~kgav~iP~~~~~~~~f~~~l~~~~~d~~~~vIvvcc~sG~---RS~~Aa~~L~k~ 151 (229)
+.+.|-|....++.+.|.+ +. .+++...+.+. .++.++++-++ ... +-..+...++++
T Consensus 50 ~~~~v~i~~~g~~~~~~~~-v~---------------~~~L~~~l~~~--~~~~~v~i~aD-~~~~~~~vv~v~d~~~~~ 110 (121)
T TIGR02804 50 LKLLITITADNQLYFNDKP-IS---------------LEELEAEIAQL--NKDQKVTLKSD-KEAKFQDFVTITDMLKAK 110 (121)
T ss_pred CcEEEEEECCCCEEECCcc-cC---------------HHHHHHHHHhh--CCCCeEEEEeC-CCCCHhHHHHHHHHHHHc
Confidence 4577788776665542211 11 13333344332 22445554443 443 345677788999
Q ss_pred CCcceEE
Q 039798 152 GFKEAYA 158 (229)
Q Consensus 152 Gf~~Vy~ 158 (229)
|++++..
T Consensus 111 G~~~v~l 117 (121)
T TIGR02804 111 EHENVQI 117 (121)
T ss_pred CCCeEEE
Confidence 9998754
No 154
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=20.02 E-value=1.7e+02 Score=24.23 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCcEEEEEc--CCChHHHHHHHHHHHcCCcceEEc
Q 039798 127 INTVVCILD--NFDGNSLKAAELLYKNGFKEAYAI 159 (229)
Q Consensus 127 ~~~vIvvcc--~sG~RS~~Aa~~L~k~Gf~~Vy~L 159 (229)
.+.+++|-+ .+|.....+++.|++.|-..|+.+
T Consensus 152 ~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 152 GRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 445665543 699999999999999999888765
No 155
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=20.02 E-value=1e+02 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCcEEEeecChhh
Q 039798 63 AIDAFQKLRNDPNAQLLDIRNKKT 86 (229)
Q Consensus 63 ~~ea~~~l~~~~~avlIDVR~~~E 86 (229)
.+++++.+...+=.+|||||.-.-
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~ 25 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPR 25 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC
Confidence 456777665555558999997543
No 156
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.01 E-value=39 Score=28.93 Aligned_cols=30 Identities=10% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhchH-HHHHHHHHHHHHHHHHH
Q 039798 22 ILLAIDDFFNRYPF-FVATCTFIWLVVIPLTQ 52 (229)
Q Consensus 22 ~~~~~~~F~~~~~~-l~~~~~~~~~l~~~~~~ 52 (229)
+-..+..|+.+|-+ +++++++++ ++|..++
T Consensus 25 l~~tv~~~L~~yGWyil~~~I~ly-~l~qkl~ 55 (190)
T PF06936_consen 25 LQSTVGSFLSSYGWYILFGCILLY-LLWQKLS 55 (190)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH-HHHHHHH
Confidence 33556678888844 444444443 4444433
Done!