Query 039800
Match_columns 576
No_of_seqs 206 out of 2459
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 1.7E-64 3.6E-69 543.7 55.5 498 48-548 22-557 (557)
2 PRK15049 L-asparagine permease 100.0 9.5E-55 2.1E-59 464.1 49.5 364 49-431 23-409 (499)
3 PRK11387 S-methylmethionine tr 100.0 2.1E-53 4.5E-58 453.0 47.1 420 50-544 10-458 (471)
4 PRK10746 putative transport pr 100.0 8.9E-53 1.9E-57 445.4 47.9 420 48-545 4-452 (461)
5 PRK10249 phenylalanine transpo 100.0 8.6E-53 1.9E-57 446.0 46.7 362 48-429 15-396 (458)
6 COG0833 LysP Amino acid transp 100.0 9.6E-54 2.1E-58 433.0 34.0 421 51-545 41-500 (541)
7 PRK10655 potE putrescine trans 100.0 3.3E-52 7.1E-57 440.9 45.6 369 52-437 4-385 (438)
8 PRK10644 arginine:agmatin anti 100.0 7E-52 1.5E-56 438.7 48.0 418 49-547 3-434 (445)
9 TIGR00908 2A0305 ethanolamine 100.0 8.8E-52 1.9E-56 438.1 48.1 421 48-548 1-436 (442)
10 PRK11357 frlA putative fructos 100.0 3.5E-52 7.6E-57 441.3 43.6 422 48-545 2-438 (445)
11 TIGR00909 2A0306 amino acid tr 100.0 2E-51 4.4E-56 434.3 47.0 424 52-541 1-429 (429)
12 COG1113 AnsP Gamma-aminobutyra 100.0 2.1E-52 4.5E-57 414.8 36.5 420 48-545 7-453 (462)
13 PRK10580 proY putative proline 100.0 3.7E-51 8E-56 434.3 48.9 364 48-431 3-388 (457)
14 PRK10836 lysine transporter; P 100.0 2.7E-51 5.8E-56 438.5 47.3 399 48-521 9-437 (489)
15 TIGR01773 GABAperm gamma-amino 100.0 3.7E-51 8.1E-56 434.3 48.0 368 49-436 7-396 (452)
16 PRK10238 aromatic amino acid t 100.0 2.5E-51 5.5E-56 434.5 46.5 364 49-432 7-390 (456)
17 KOG1289 Amino acid transporter 100.0 2.2E-52 4.7E-57 421.9 32.4 462 34-556 30-523 (550)
18 PRK11049 D-alanine/D-serine/gl 100.0 1.3E-50 2.9E-55 430.8 47.1 365 49-433 15-404 (469)
19 PRK10435 cadB lysine/cadaverin 100.0 2.2E-50 4.8E-55 425.4 44.2 357 52-426 3-377 (435)
20 TIGR03428 ureacarb_perm permea 100.0 1.2E-49 2.6E-54 424.5 49.5 414 48-493 7-449 (475)
21 KOG1287 Amino acid transporter 100.0 6.9E-51 1.5E-55 411.3 32.7 378 48-439 6-395 (479)
22 TIGR00905 2A0302 transporter, 100.0 2E-49 4.3E-54 422.6 45.7 417 52-545 5-439 (473)
23 TIGR00911 2A0308 L-type amino 100.0 1.1E-49 2.5E-54 427.8 44.1 376 48-438 36-425 (501)
24 TIGR00907 2A0304 amino acid pe 100.0 1.2E-49 2.5E-54 426.3 43.9 443 48-549 6-481 (482)
25 TIGR00913 2A0310 amino acid pe 100.0 3.1E-49 6.8E-54 422.8 47.0 358 53-430 1-394 (478)
26 KOG1286 Amino acid transporter 100.0 1E-50 2.2E-55 427.0 29.8 486 49-546 25-552 (554)
27 PRK10197 gamma-aminobutyrate t 100.0 1.4E-48 3E-53 412.5 46.2 346 64-429 2-369 (446)
28 PRK11021 putative transporter; 100.0 5.4E-48 1.2E-52 404.9 47.0 354 56-428 1-362 (410)
29 TIGR03810 arg_ornith_anti argi 100.0 2.4E-47 5.2E-52 406.1 45.2 411 54-543 1-432 (468)
30 TIGR03813 put_Glu_GABA_T putat 100.0 7.4E-46 1.6E-50 395.6 45.5 434 54-545 1-458 (474)
31 TIGR00910 2A0307_GadC glutamat 100.0 6.8E-45 1.5E-49 388.7 45.4 401 53-491 3-430 (507)
32 TIGR00930 2a30 K-Cl cotranspor 100.0 1.2E-45 2.7E-50 413.4 41.0 425 51-545 73-540 (953)
33 COG0531 PotE Amino acid transp 100.0 5.6E-42 1.2E-46 366.9 44.0 378 48-437 6-398 (466)
34 PRK15238 inner membrane transp 100.0 2E-41 4.3E-46 363.0 47.4 404 52-488 5-460 (496)
35 PF13520 AA_permease_2: Amino 100.0 9E-43 2E-47 368.4 34.5 361 56-434 1-381 (426)
36 PF00324 AA_permease: Amino ac 100.0 3E-44 6.5E-49 384.1 12.7 359 62-434 3-398 (478)
37 TIGR00837 araaP aromatic amino 100.0 5.6E-28 1.2E-32 251.2 32.9 337 63-424 4-352 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.5E-22 3.2E-27 208.8 35.1 283 55-357 2-292 (359)
39 KOG2082 K+/Cl- cotransporter K 99.9 2E-22 4.2E-27 207.3 20.4 365 55-424 113-590 (1075)
40 KOG1288 Amino acid transporter 99.9 1.1E-21 2.5E-26 200.3 25.2 374 55-437 66-481 (945)
41 TIGR00796 livcs branched-chain 99.9 1.1E-18 2.4E-23 176.9 38.1 342 64-443 3-369 (378)
42 PHA02764 hypothetical protein; 99.9 3.7E-19 8.1E-24 167.3 25.4 278 47-381 5-285 (399)
43 PF03222 Trp_Tyr_perm: Tryptop 99.8 2E-16 4.4E-21 163.2 38.8 290 55-359 2-303 (394)
44 TIGR00814 stp serine transport 99.8 5.6E-17 1.2E-21 166.9 32.1 283 60-363 7-313 (397)
45 KOG2083 Na+/K+ symporter [Inor 99.8 6E-18 1.3E-22 172.3 17.6 367 53-435 27-422 (643)
46 PRK10483 tryptophan permease; 99.8 1.5E-14 3.3E-19 147.8 38.4 323 52-399 7-341 (414)
47 PRK15132 tyrosine transporter 99.7 2.8E-14 6E-19 146.6 38.1 343 57-428 4-362 (403)
48 PRK09664 tryptophan permease T 99.7 3.2E-14 6.8E-19 145.3 37.9 323 57-403 10-346 (415)
49 PF03845 Spore_permease: Spore 99.7 2.9E-14 6.3E-19 144.5 31.0 284 55-359 1-290 (320)
50 PRK13629 threonine/serine tran 99.7 1.7E-13 3.6E-18 140.0 35.0 282 63-363 26-348 (443)
51 COG0814 SdaC Amino acid permea 99.6 1.9E-12 4E-17 134.8 37.3 285 51-348 4-302 (415)
52 PF01235 Na_Ala_symp: Sodium:a 99.4 4.8E-10 1.1E-14 114.3 30.7 292 50-361 13-338 (416)
53 TIGR00835 agcS amino acid carr 99.4 2.8E-09 6.1E-14 109.4 32.7 285 54-360 45-364 (425)
54 COG1115 AlsT Na+/alanine sympo 99.3 2.6E-08 5.6E-13 100.5 34.3 290 51-361 58-382 (452)
55 KOG1304 Amino acid transporter 99.2 2.7E-08 5.8E-13 101.5 27.8 351 53-437 44-423 (449)
56 KOG1303 Amino acid transporter 99.2 3.5E-08 7.6E-13 102.2 28.3 280 52-351 34-325 (437)
57 PTZ00206 amino acid transporte 99.1 1.8E-07 3.9E-12 99.5 34.0 243 57-307 61-318 (467)
58 PLN03074 auxin influx permease 99.1 1.3E-07 2.9E-12 100.2 32.6 234 55-307 45-293 (473)
59 PRK11375 allantoin permease; P 99.1 3.7E-06 8E-11 89.7 40.0 329 48-398 19-365 (484)
60 COG3949 Uncharacterized membra 99.0 2.5E-06 5.5E-11 82.7 31.4 264 63-352 10-280 (349)
61 PF13906 AA_permease_C: C-term 98.9 5E-09 1.1E-13 73.0 5.5 51 496-546 1-51 (51)
62 PRK11017 codB cytosine permeas 98.8 0.00027 6E-09 73.9 42.0 218 53-292 8-229 (404)
63 COG1457 CodB Purine-cytosine p 98.8 8.4E-05 1.8E-09 76.6 36.4 168 90-276 54-224 (442)
64 PRK09442 panF sodium/panthothe 98.8 0.00022 4.8E-09 76.6 39.7 286 53-363 40-350 (483)
65 PF01490 Aa_trans: Transmembra 98.7 2.8E-09 6.1E-14 112.2 0.4 357 54-432 1-378 (409)
66 TIGR02119 panF sodium/pantothe 98.6 0.0012 2.5E-08 70.9 39.8 283 53-356 39-345 (471)
67 PF05525 Branch_AA_trans: Bran 98.6 0.0003 6.5E-09 72.7 32.4 310 64-415 11-345 (427)
68 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.0016 3.5E-08 70.0 39.2 283 53-357 35-346 (487)
69 PRK15419 proline:sodium sympor 98.5 0.0017 3.7E-08 70.0 39.1 154 53-224 39-200 (502)
70 TIGR00813 sss transporter, SSS 98.5 0.0004 8.7E-09 73.0 32.6 283 53-357 2-322 (407)
71 COG1953 FUI1 Cytosine/uracil/t 98.5 0.0028 6.2E-08 65.7 36.8 182 48-232 33-218 (497)
72 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.0024 5.2E-08 67.8 36.0 239 49-296 7-257 (442)
73 PF00474 SSF: Sodium:solute sy 98.4 8.3E-05 1.8E-09 78.1 23.3 289 53-365 5-325 (406)
74 PRK15433 branched-chain amino 98.3 0.0051 1.1E-07 63.8 32.5 209 187-415 124-348 (439)
75 PRK10484 putative transporter; 98.2 0.013 2.8E-07 63.6 44.2 291 53-357 37-355 (523)
76 PRK09395 actP acetate permease 98.2 0.014 3E-07 63.8 38.7 154 53-225 68-223 (551)
77 COG0591 PutP Na+/proline sympo 98.2 0.0088 1.9E-07 64.2 34.0 282 53-357 37-353 (493)
78 PF01566 Nramp: Natural resist 98.1 0.0032 7E-08 64.9 28.3 244 99-361 20-285 (358)
79 TIGR02711 symport_actP cation/ 98.1 0.026 5.5E-07 61.6 36.4 281 53-355 66-380 (549)
80 PRK12488 acetate permease; Pro 98.0 0.045 9.7E-07 59.8 37.8 156 53-227 66-223 (549)
81 PRK00701 manganese transport p 97.9 0.042 9.1E-07 57.9 35.7 68 99-166 72-141 (439)
82 TIGR03648 Na_symport_lg probab 97.9 0.058 1.3E-06 59.0 34.7 148 53-221 31-182 (552)
83 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.041 8.9E-07 57.0 32.1 127 87-232 43-171 (416)
84 TIGR02358 thia_cytX probable h 97.9 0.044 9.5E-07 57.0 41.3 198 89-303 30-229 (386)
85 PF02705 K_trans: K+ potassium 97.9 0.0052 1.1E-07 65.0 23.9 221 187-422 134-371 (534)
86 PF02028 BCCT: BCCT family tra 97.8 0.077 1.7E-06 56.3 32.1 348 52-427 71-483 (485)
87 COG0733 Na+-dependent transpor 97.7 0.092 2E-06 54.1 30.5 285 57-348 10-322 (439)
88 COG1114 BrnQ Branched-chain am 97.7 0.086 1.9E-06 53.6 31.6 318 60-415 9-347 (431)
89 KOG1305 Amino acid transporter 97.6 0.019 4.2E-07 59.6 23.1 243 53-308 3-257 (411)
90 PLN00151 potassium transporter 97.4 0.032 7E-07 61.4 22.5 218 187-419 276-511 (852)
91 PF02133 Transp_cyt_pur: Perme 97.4 0.0091 2E-07 63.5 18.3 171 52-225 5-177 (440)
92 PLN00149 potassium transporter 97.4 0.072 1.6E-06 58.7 24.4 221 187-419 200-438 (779)
93 PLN00150 potassium ion transpo 97.2 0.05 1.1E-06 59.8 20.5 218 187-419 216-451 (779)
94 PRK10745 trkD potassium transp 96.9 0.29 6.2E-06 52.8 23.1 220 187-421 145-381 (622)
95 PRK09950 putative transporter; 96.8 1 2.2E-05 48.1 28.4 24 53-76 81-104 (506)
96 TIGR00794 kup potassium uptake 96.7 0.085 1.8E-06 57.6 17.4 220 187-421 170-407 (688)
97 PLN00148 potassium transporter 96.4 0.24 5.2E-06 54.7 18.3 217 187-418 199-433 (785)
98 PRK09928 choline transport pro 96.3 2.2 4.9E-05 46.9 28.7 24 53-76 90-113 (679)
99 COG4147 DhlC Predicted symport 96.2 1.9 4.1E-05 44.9 26.7 270 104-397 90-410 (529)
100 TIGR00842 bcct choline/carniti 96.0 2.5 5.4E-05 44.6 26.6 24 53-76 34-57 (453)
101 KOG2466 Uridine permease/thiam 95.8 2.1 4.5E-05 44.6 20.6 37 48-84 48-84 (572)
102 PRK03356 L-carnitine/gamma-but 95.8 3.4 7.4E-05 44.2 29.1 25 53-77 83-107 (504)
103 COG3158 Kup K+ transporter [In 95.4 1.4 3E-05 46.7 18.1 338 61-428 18-394 (627)
104 COG4145 PanF Na+/panthothenate 95.4 3.5 7.5E-05 41.5 28.1 244 92-356 72-344 (473)
105 COG1292 BetT Choline-glycine b 95.0 6 0.00013 42.0 25.1 88 330-425 403-494 (537)
106 PF00209 SNF: Sodium:neurotran 94.8 7.6 0.00016 42.2 28.3 146 200-349 195-366 (523)
107 KOG4303 Vesicular inhibitory a 91.9 0.64 1.4E-05 45.9 7.7 229 51-300 112-355 (524)
108 PF02554 CstA: Carbon starvati 91.1 19 0.00042 36.6 19.9 95 56-153 52-148 (376)
109 PF02667 SCFA_trans: Short cha 89.9 10 0.00023 39.6 14.7 38 360-397 74-111 (453)
110 PF12794 MscS_TM: Mechanosensi 87.6 16 0.00036 37.1 14.4 36 265-300 28-67 (340)
111 KOG2349 Na+:iodide/myo-inosito 85.6 19 0.00042 39.0 14.0 222 119-359 108-362 (585)
112 PF01102 Glycophorin_A: Glycop 85.4 1.3 2.8E-05 37.4 4.1 21 525-545 73-93 (122)
113 COG2271 UhpC Sugar phosphate p 83.3 21 0.00046 37.1 12.5 48 341-397 67-114 (448)
114 TIGR01197 nramp NRAMP (natural 78.9 86 0.0019 32.6 37.5 43 316-360 282-324 (390)
115 COG3247 HdeD Uncharacterized c 73.5 74 0.0016 29.1 16.6 39 376-414 14-52 (185)
116 PF05297 Herpes_LMP1: Herpesvi 73.0 0.95 2.1E-05 43.2 -0.5 18 372-389 13-30 (381)
117 TIGR00910 2A0307_GadC glutamat 71.5 1.6E+02 0.0034 32.0 17.9 36 482-517 382-421 (507)
118 PLN00411 nodulin MtN21 family 69.8 98 0.0021 31.8 13.3 40 497-536 285-324 (358)
119 TIGR00366 conserved hypothetic 68.9 1.1E+02 0.0024 32.1 13.2 31 367-397 78-108 (438)
120 PF09991 DUF2232: Predicted me 63.7 1.5E+02 0.0033 29.0 17.4 101 331-435 158-263 (290)
121 PF08507 COPI_assoc: COPI asso 62.3 1E+02 0.0022 26.6 10.2 20 520-539 85-104 (136)
122 KOG3660 Sodium-neurotransmitte 62.2 2.6E+02 0.0056 31.1 33.9 48 185-232 215-263 (629)
123 KOG1286 Amino acid transporter 56.6 3E+02 0.0066 30.1 20.9 47 186-232 156-202 (554)
124 KOG2325 Predicted transporter/ 54.6 99 0.0021 33.1 10.2 31 269-299 22-52 (488)
125 PTZ00206 amino acid transporte 51.8 1.8E+02 0.0039 31.1 11.9 56 314-371 121-176 (467)
126 PF05767 Pox_A14: Poxvirus vir 50.1 78 0.0017 25.0 6.2 21 525-545 52-72 (92)
127 TIGR00913 2A0310 amino acid pe 49.0 1.5E+02 0.0033 31.6 11.0 9 429-437 398-406 (478)
128 PHA03048 IMV membrane protein; 48.3 85 0.0018 24.6 6.2 23 525-547 51-73 (93)
129 PHA02898 virion envelope prote 47.9 64 0.0014 25.2 5.4 24 525-548 52-75 (92)
130 PRK10263 DNA translocase FtsK; 47.7 6E+02 0.013 30.9 20.2 7 460-466 142-148 (1355)
131 PF02447 GntP_permease: GntP f 45.9 3.9E+02 0.0085 28.3 15.4 48 338-391 62-109 (441)
132 PF05297 Herpes_LMP1: Herpesvi 45.0 7.2 0.00016 37.5 0.0 46 444-489 30-75 (381)
133 PF14150 YesK: YesK-like prote 41.9 1.7E+02 0.0036 22.8 9.3 41 423-466 17-57 (81)
134 PF06570 DUF1129: Protein of u 40.5 3.1E+02 0.0067 25.5 13.2 16 473-488 157-172 (206)
135 PF06679 DUF1180: Protein of u 40.3 45 0.00098 29.8 4.3 16 525-540 99-114 (163)
136 COG1966 CstA Carbon starvation 39.6 5.3E+02 0.011 28.0 34.8 101 56-158 52-153 (575)
137 PF05961 Chordopox_A13L: Chord 37.4 80 0.0017 23.4 4.3 23 525-547 7-29 (68)
138 COG5505 Predicted integral mem 34.7 1.3E+02 0.0027 29.9 6.5 25 376-400 27-51 (384)
139 KOG3659 Sodium-neurotransmitte 34.4 6.6E+02 0.014 27.6 32.7 101 187-287 256-365 (629)
140 PHA03049 IMV membrane protein; 33.3 93 0.002 22.9 4.1 22 525-546 7-28 (68)
141 TIGR01773 GABAperm gamma-amino 32.4 6.2E+02 0.013 26.7 14.8 72 473-544 372-451 (452)
142 TIGR02230 ATPase_gene1 F0F1-AT 31.2 2.9E+02 0.0063 22.5 7.4 25 51-75 37-61 (100)
143 PHA02681 ORF089 virion membran 30.6 70 0.0015 24.6 3.3 23 523-545 6-28 (92)
144 COG1272 Predicted membrane pro 30.4 4.8E+02 0.01 24.8 12.0 44 491-538 140-183 (226)
145 PRK15238 inner membrane transp 28.4 7.6E+02 0.017 26.4 14.1 21 343-363 322-342 (496)
146 PF10225 DUF2215: Uncharacteri 28.3 5.5E+02 0.012 24.8 11.5 11 420-430 52-62 (249)
147 PF15102 TMEM154: TMEM154 prot 28.1 67 0.0015 28.0 3.2 7 540-546 81-87 (146)
148 PRK12489 anaerobic C4-dicarbox 28.0 7.5E+02 0.016 26.2 13.8 20 378-397 83-102 (443)
149 PRK09804 putative cryptic C4-d 27.7 7.6E+02 0.017 26.2 11.6 35 363-397 96-130 (455)
150 PF05449 DUF754: Protein of un 27.5 3E+02 0.0066 21.5 6.8 40 418-457 10-49 (83)
151 PRK00269 zipA cell division pr 26.8 96 0.0021 30.5 4.4 26 520-545 4-29 (293)
152 TIGR03813 put_Glu_GABA_T putat 25.5 8.3E+02 0.018 25.9 18.7 35 484-518 381-419 (474)
153 PHA02902 putative IMV membrane 25.1 2.1E+02 0.0045 21.0 4.6 25 528-552 11-35 (70)
154 PF08693 SKG6: Transmembrane a 25.1 42 0.00091 22.1 1.1 14 531-544 26-39 (40)
155 COG1230 CzcD Co/Zn/Cd efflux s 25.1 6.9E+02 0.015 24.9 11.9 17 501-517 127-143 (296)
156 PF05525 Branch_AA_trans: Bran 24.8 8.4E+02 0.018 25.7 16.3 95 122-232 264-358 (427)
157 PF03806 ABG_transport: AbgT p 24.8 2.4E+02 0.0051 30.3 7.2 45 95-139 301-345 (502)
158 PF11998 DUF3493: Protein of u 24.2 3.3E+02 0.0072 20.9 6.7 41 263-303 4-44 (75)
159 PF05656 DUF805: Protein of un 24.0 4.1E+02 0.009 21.9 11.1 21 414-434 57-77 (120)
160 KOG0748 Predicted membrane pro 23.4 7.3E+02 0.016 24.5 10.3 34 465-498 210-243 (286)
161 PRK00968 tetrahydromethanopter 23.1 2E+02 0.0043 26.8 5.4 33 268-300 203-236 (240)
162 COG4325 Predicted membrane pro 22.3 7.3E+02 0.016 25.6 9.5 46 350-397 97-142 (464)
163 PRK13108 prolipoprotein diacyl 21.9 8.9E+02 0.019 25.8 10.8 14 530-544 264-277 (460)
164 PF13038 DUF3899: Domain of un 21.6 68 0.0015 25.5 2.0 11 528-538 10-20 (92)
165 PF14256 YwiC: YwiC-like prote 21.4 5.2E+02 0.011 22.1 10.7 47 384-430 7-53 (129)
166 PF01102 Glycophorin_A: Glycop 21.3 1.9E+02 0.0041 24.5 4.6 18 376-393 60-77 (122)
167 PRK11056 hypothetical protein; 21.1 5E+02 0.011 21.8 9.3 14 531-544 99-112 (120)
168 PF04277 OAD_gamma: Oxaloaceta 20.5 2.6E+02 0.0055 21.3 5.0 6 533-538 22-27 (79)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.7e-64 Score=543.73 Aligned_cols=498 Identities=38% Similarity=0.659 Sum_probs=411.5
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
++++++|+++.++++.+++|.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|+|+++
T Consensus 22 ~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~ 101 (557)
T TIGR00906 22 EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYV 101 (557)
T ss_pred cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHH
Confidence 34579999999999999999999999999999887555899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCC--chhhHHHHHHHHHHHHHHHhcch
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGF--NEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
.+|+.+||++||.++++|....+..+..++.|+..+++.....+.........+. .....++++++++++++|++|+|
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999998876532221111000000000 11235677777888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCC--------CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWK-DPKNPS--------GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~--------~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
.++++|++++.++++.++++++.++.+ +.+|+. ++.|.|+.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 999999999999999998888888776 444543 67777888999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
||+||+++.++++++++|++.+++.....|+++++.++|+..+++ ..|.++...++.++++.+.+++.++.+++.||+
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~--~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE--YVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888889999998 778788899999999999999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCC
Q 039800 357 MCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGT-TNP 435 (576)
Q Consensus 357 l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~ 435 (576)
+|+|||||.+|++|+|+|||+++|++++++.++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.+ ++|
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~ 419 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA 419 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999988888888999999999999999999999999998775211 001
Q ss_pred -----------------------C--chhHHHHHHHHHHHH-HHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Q 039800 436 -----------------------Q--PTLSFLFLFSVTSII-FTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQ 489 (576)
Q Consensus 436 -----------------------~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (576)
. ..-..+..+..+..+ ....|......+|.. .+.....+..+.......+.|+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 498 (557)
T TIGR00906 420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSI-ALLTLFLVLFLLVVLTIWRQPQ 498 (557)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHHhcCCC
Confidence 0 000111111111111 112222111223333 3344444444555555666666
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhccccc
Q 039800 490 AKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFD 548 (576)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 548 (576)
.+.+++||+|.+|++|.++++.|++++.+++..+|+.+.+|+++|+++|+.|++||+++
T Consensus 499 ~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 499 NKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 56689999999999999999999999999999999999999999999999999999764
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=9.5e-55 Score=464.10 Aligned_cols=364 Identities=20% Similarity=0.336 Sum_probs=312.4
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
++++||+++.+++.++++|.+||+|+|..++..+.. +||..+++|++++++.++.+.+++|+++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999876 8998888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP-TAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
+||..||++||.+|++|....+......+.+...+-..+ .+ .+.++.+++++++.+|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVP---------------QWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777666666666665331110 11 12567777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----CC--CC---C------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK----DP--KN---P------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~----~~--~~---~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|.+++.+|++.++.+++.++.. ++ .+ + .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988887776665432 11 11 1 23445667777778888999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|++|||+..++..+.++|++..+++....|+++++. .+|+.++++ ..|.++...++.+..+++.+++.++.++
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~--~~g~~~~~~ii~~~ilia~~ss~ns~~~ 324 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFS--KLGVPYIGSIMNIVVLTAALSSLNSGLY 324 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888753 579999988 7788888999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|+|||||.+|++|+|+| |+++|++|++++.++.++..++ ..++.+.++.+.+.++.|.+++++.+++
T Consensus 325 ~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~ 403 (499)
T PRK15049 325 CTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRL 403 (499)
T ss_pred HHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8899999999988876543222 3588899999999999999999999998
Q ss_pred hhccCC
Q 039800 426 RYVNLG 431 (576)
Q Consensus 426 r~~~~~ 431 (576)
|++.++
T Consensus 404 R~~~~~ 409 (499)
T PRK15049 404 RKAIKE 409 (499)
T ss_pred HHhhhh
Confidence 876443
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.1e-53 Score=453.00 Aligned_cols=420 Identities=19% Similarity=0.273 Sum_probs=344.7
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+++||+++.++++++++|.++|+|+|..++..+.. +|| ..+++|+++++++++.+++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 46899999999999999999999999999999877 787 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||.+||.+|+++....+......+.+++.+++. .+. ....+++.++++++|++|+|..+
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~~~~~~~~~~~~in~~gvk~~~ 152 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-VPV---------------WPWCLLFCALIFGLNVVSTRFFA 152 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CcH---------------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999988887776666666544331 111 13445556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-------CCC-------CC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-------DPK-------NP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-------~~~-------~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++|.+.+.+|++.++.+++.++.. +.. ++ .++.+++..+++.++..++|+|.|+|.+++++||+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999887666655431 111 11 12234555678888899999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+|||+..++..+.++|++..+++....|.++.+ +++|+.++++ ..|.++...++.+.++++.+++.++.++
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~--~~g~~~~~~ii~~~~~~s~~~~~~~~~~ 310 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFE--KVGIPYAADIFNFVILTAILSAANSGLY 310 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998889987764 4679999988 7787899999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++.+++.+++
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMF 389 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6899999999887655443332 2356678888889999999999999998
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHH
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIP 505 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (576)
|++++++.+ +..+++||.|.+|+.|
T Consensus 390 r~~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~ 414 (471)
T PRK11387 390 RRRHLRDGK-------------------------------------------------------ALSELAYRAPWYPLTP 414 (471)
T ss_pred HHHHHhcCC-------------------------------------------------------CCCCCCccCCCccHHH
Confidence 887664322 1235678888899999
Q ss_pred HHHHHHHHHHHhcCChh-----HHHHHHHHHHHHHHHHHHhhhc
Q 039800 506 CISIFLNIFLLGSLDGP-----SYVRFGFFSALAVLVYLLYSVH 544 (576)
Q Consensus 506 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~y~~~~~~ 544 (576)
+++++.+.+++...... .......+++++++.|..++|+
T Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 415 ILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999888777654221 2344556667777777666544
No 4
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=8.9e-53 Score=445.43 Aligned_cols=420 Identities=18% Similarity=0.297 Sum_probs=352.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
.++++||+++.+|+.++++|.+||+|+|..++..+.. +||..+++|++++++.++++++++|+++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999887 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||.+||.+|+++....+.+....+.|++.+++. .+. ..+..+++++.+.+|++|+|..
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-~~~---------------~~~~~~~~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-MAQ---------------WIPALIAVALVALANLAAVRLY 146 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-Cch---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999998888888888888776542 111 1455667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------C------CCCCC---CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK------D------PKNPS---GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~------~------~~~~~---~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|..++.+|+..++++++.++.. + .+++. ++.++|+.|+..++..+.|+|.|+|.+++.+||+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999988876666554321 1 12221 2345678899999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|++|||+..++..+.++|++..+++....|+++++. ++|+.++++ ..|.+....++.+..+.+.+++.|+.++
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~--~~g~~~~~~i~~~~il~a~~s~~n~~~~ 304 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA--KIGITAAAGIINFVVLTAALSGCNSGMY 304 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH--HhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999998864 569999998 6687888889999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHH---Hh-----hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIA---LF-----TDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.+...+.. +. ..++.+.++++.+.++.|++++++.+
T Consensus 305 ~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i 383 (461)
T PRK10746 305 SCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQL 383 (461)
T ss_pred HHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 88999999998865433211 11 24788999999999999999999999
Q ss_pred HHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccH
Q 039800 424 YRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPW 503 (576)
Q Consensus 424 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (576)
++||++|+. .++++||.|.+|+
T Consensus 384 ~~r~~~~~~----------------------------------------------------------~~~~~~~~~~~p~ 405 (461)
T PRK10746 384 RFRRAHKAA----------------------------------------------------------IASHPFRSILFPW 405 (461)
T ss_pred HHHHhcccc----------------------------------------------------------ccCCCCcCCCccH
Confidence 999886641 2345677788888
Q ss_pred HHHHHHHHHHHHHhcC--C---hhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 504 IPCISIFLNIFLLGSL--D---GPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 504 ~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.++++++.++.++..+ + ..+......++.+..+.|+.|++.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 406 ANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888777775543 1 2345555666777888887776654
No 5
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=8.6e-53 Score=445.96 Aligned_cols=362 Identities=23% Similarity=0.375 Sum_probs=315.2
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
++++++|+++.+++..+++|.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|+|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5568999999999999999999999999999999886 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||.+||.+|+++....+.+....+.|++.+++.. + ...+..+++++.+.+|++|+|..
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-P---------------TWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-c---------------HHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999998888888887888887655321 1 12556777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----C------CCC-C--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK----D------PKN-P--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~----~------~~~-~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
+++|.+++.+|++.++.+++.++.. + .++ + .++.++|+.++..++...+|+|.|+|.+++++||+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 9999999999988776666554422 1 111 1 1234567888999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQ 353 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (576)
|+|++||++..++..+.++|++..++.....|+++... ++|+.++++ ..+.++...++.+..+++.+++.++.+++.
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFH--NLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888877643 579999988 556688888899999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 354 ARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427 (576)
Q Consensus 354 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 427 (576)
||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+...++.|++++++.+++|+
T Consensus 316 sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7899999999999988766544 257889999999999999999999999886
Q ss_pred cc
Q 039800 428 VN 429 (576)
Q Consensus 428 ~~ 429 (576)
++
T Consensus 395 ~~ 396 (458)
T PRK10249 395 AM 396 (458)
T ss_pred HH
Confidence 43
No 6
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-54 Score=433.01 Aligned_cols=421 Identities=20% Similarity=0.318 Sum_probs=368.7
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
++||+|..+|+.++++|..||+|.|...+..+.. +||. ++++|++.+++.+++..+++||++.+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999987 9997 8999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
+|.+||..||.||+.|....+.+..+.+..++.+++.+.+.+ ++..++.+++.++|.+++|.++.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~---------------~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPW---------------IWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChH---------------HHHHHHHHHHHHHHHhcccccce
Confidence 999999999999999999999999999999999875543322 67788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----CC-CCC--------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 210 VNMILTVLHILFIAFVILMGFWK----DP-KNP--------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~----~~-~~~--------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
.+.++..+|++.++.+++.++.. .+ +.. .+.+++|+.|+...+..+.|+|.|.|.+...++|.|||+
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~ 264 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR 264 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch
Confidence 99999999999999998888765 11 111 233457799999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID---------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
|++|||+.-.+..+.++|++..+++...+|+++-+ ..+|+..+++ ..|.+....++++.++.+.+++.|
T Consensus 265 K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~--~~Gi~~~~~imNaVIL~svlSa~N 342 (541)
T COG0833 265 KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIK--NAGIPVAASIMNAVILTSVLSAAN 342 (541)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHH--hcCCccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987732 2469999999 889999999999999999999999
Q ss_pred HHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHH
Q 039800 348 VAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANA 421 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 421 (576)
+.++++||++|+||+||..||+|+|+| |+|+|++|++++.+++++-.+. ..|+++.++.+.+.++.|..++++
T Consensus 343 S~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~s 421 (541)
T COG0833 343 SGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLS 421 (541)
T ss_pred ccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999999888654443 269999999999999999999999
Q ss_pred HHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 039800 422 VIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLM 501 (576)
Q Consensus 422 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (576)
.+++|+..+.+.| ..+..+||.|++
T Consensus 422 hirFR~A~~~QG~-------------------------------------------------------s~~~L~yks~~~ 446 (541)
T COG0833 422 HIRFRRAMKAQGR-------------------------------------------------------SLDELPYKSPFG 446 (541)
T ss_pred HHHHHHHHHHcCC-------------------------------------------------------ChhhcCccCCCc
Confidence 9999987665432 234678999999
Q ss_pred cHHHHHHHHHHHHHHhcCChhHHH----------HHHHHHHHHHHHHHHhhhcc
Q 039800 502 PWIPCISIFLNIFLLGSLDGPSYV----------RFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~y~~~~~~~ 545 (576)
|+.|+.++++|+.++...+|.... ....-+-+.++.|+.|+..+
T Consensus 447 p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~ 500 (541)
T COG0833 447 PYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYK 500 (541)
T ss_pred cHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEe
Confidence 999999999999999986554432 22222334555666655443
No 7
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=3.3e-52 Score=440.86 Aligned_cols=369 Identities=17% Similarity=0.283 Sum_probs=314.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+||+++.++.+.++++.++|+|+|..++... . +|+..+++|++++++.++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4788999999999999999999999987753 4 6888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..||++||.+++++.......+.....|+..+++...+.+. ..++.++++++++.+|++|+|..+++|
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~------------~~~~~~~~l~~~~~ln~~g~~~~~~i~ 149 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQ------------ICLATIGVLWLCTVANFGGARITGQIS 149 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH------------HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999887777777777888777653322221 225566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCC-CCCCCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPS-GFFPYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~-~~~~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
++.+..+++.++++++.++.. +++++. ++.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+||+++.+
T Consensus 150 ~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~ 229 (438)
T PRK10655 150 SVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHH
Confidence 999999988887777766554 444442 233333 356777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..+++++|++...+.....|++++. ++.|+.+++++ ..| ++...++.+..+++.+++.+++..+.+|++++++|||.
T Consensus 230 ~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~-~~g-~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~ 307 (438)
T PRK10655 230 TLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQ-MFN-PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGY 307 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHH-HcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999998888888877764 45788888874 455 67777888888899999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQP 437 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 437 (576)
+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+++.+||+|
T Consensus 308 lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~ 385 (438)
T PRK10655 308 FPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAK 385 (438)
T ss_pred hhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhH
Confidence 999999999 6899999999999887665543 3578899999999999999999999999988877666665
No 8
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=7e-52 Score=438.71 Aligned_cols=418 Identities=19% Similarity=0.271 Sum_probs=339.5
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+.+++|+++.++.+.+++|.++|+|+|..++.... .|+..+++|+++++..++.+++++|+++++|++||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 45678999999999999999999999999987654 3556788999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||++||.+|+.+.............|...+++...+.+. ..++.++++++++.+|++|+|..+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLV------------LTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHH------------HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999999999999988777777666666777766543222221 225667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC-CCC---CchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSG-FFP---YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGV 283 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~-~~~---~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai 283 (576)
++|++.+..+++.++++++.++.. +.+++.+ +.+ .++.++..++..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 999999999998887777766554 3333221 111 23556777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGR 362 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 362 (576)
+.++.+++++|++..++.....|++++. ++.|+.+++++ ..| ++...++.+..+++.+++.++++...+|++++|||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~-~~g-~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ar 306 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARM-ALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHH-Hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887764 46789888884 555 66777888888889999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 363 SSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 363 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
||.+||+|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...+++|++++++.+++|+|+++.+|
T Consensus 307 dg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~- 384 (445)
T PRK10644 307 DGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR- 384 (445)
T ss_pred CCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc-
Confidence 999999999999 5799999999999988776544 2488899999999999999999999998877553222
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHH
Q 039800 436 QPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFL 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (576)
|..++.|+++++.++++
T Consensus 385 ---------------------------------------------------------------p~~~~~~~~~~~~~~~~ 401 (445)
T PRK10644 385 ---------------------------------------------------------------PAYLAVTLIAFVYCIWA 401 (445)
T ss_pred ---------------------------------------------------------------cchhHHHHHHHHHHHHH
Confidence 23456777788888777
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHH-Hhhhcccc
Q 039800 516 LGSLDGPSYVRFGFFSALAVLVYL-LYSVHASF 547 (576)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~~y~-~~~~~~~~ 547 (576)
+...+..+.....++.+++.+.|+ .++|||+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 402 VVGSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 776665555555555666666664 45555433
No 9
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=8.8e-52 Score=438.08 Aligned_cols=421 Identities=20% Similarity=0.328 Sum_probs=345.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 357799999999999999999997 777666666555 7875 7889999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+||..||++||.+++++....+.++..+++|+..+++..+ . ...+.+++++.+++|++|+|.
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~-~---------------~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP-G---------------WLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-h---------------hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764321 1 156667777888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCC--------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCC
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPKNP--------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK 277 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~--------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r 277 (576)
.+++|.+.+.++++.+++++.....+ +..++ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998888765554443332 22121 2344556678899999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 278 DIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGW-KWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 278 ~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
|+||+++.+..++.++|+..........|.+++. +++|+.+++++ ..|. ++...++.+..+++.+++.++.+.+.||
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~-~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR 301 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALES-IYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSR 301 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHH-HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877766667766664 45688888874 5553 4566777788888889999999999999
Q ss_pred HHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 356 YMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 356 ~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
++++|||||.+|++|+|+| |+|+|++|++++.++++++.+.++.+.+.++.+...++.|.+.+++++++|+++|+.+|
T Consensus 302 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~r- 379 (442)
T TIGR00908 302 QIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMER- 379 (442)
T ss_pred HHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-
Confidence 9999999999999999999 99999999999999998887777778888889999999999999999999988666444
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHH
Q 039800 436 QPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFL 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (576)
+||.|..++.|+++++.+.++
T Consensus 380 -----------------------------------------------------------p~~~p~~~~~~~l~~~~~~~~ 400 (442)
T TIGR00908 380 -----------------------------------------------------------PYRTPGGILTPGVALVLACVA 400 (442)
T ss_pred -----------------------------------------------------------CccCCCcchHHHHHHHHHHHH
Confidence 455566777888888887777
Q ss_pred HhcC---ChhHHHHHHHHHHHHHHHHHHhhhccccc
Q 039800 516 LGSL---DGPSYVRFGFFSALAVLVYLLYSVHASFD 548 (576)
Q Consensus 516 ~~~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 548 (576)
+..+ ++..+.....+.++..++|+.|+|+|..+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 401 LVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 6653 44334444566667777777777666444
No 10
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=3.5e-52 Score=441.26 Aligned_cols=422 Identities=23% Similarity=0.376 Sum_probs=343.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||++++++.++++++.++|+|+|..++......+++. .+++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 2 ~~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 2 GSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred CcccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 356799999999999999999999999999998776645554 7889999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcch
Q 039800 127 VTFGEFAAFLTGSN-LILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 127 ~~~g~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
+.+||.+||+++|. ++.......+.++...++|+...++.+. + ....++.+++.+++.+|.+|+|
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--~------------~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP--L------------LGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--H------------HHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999996 4445566677777788888776543211 0 0124566667778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC---C--CCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCc
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSG---F--FPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKD 278 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~---~--~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~ 278 (576)
..+++|++++..+++.++++++.++.. +.+++.+ . ...+ +.++..++..++|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999999887777766543 3222211 1 1122 5678888999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccC-CCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 279 IPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGK-SDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 279 ~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
+|||+..++.+++++|++.+++.....|.+++.. +.|+.+++++. ..| ++...++.+.++++.+++.++++.+.+|+
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 306 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALG-STAGIFVAITAMIVILGSLSSCVMYQPRL 306 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999988888887743 56888877720 133 55666777788888999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 039800 357 MCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQ 436 (576)
Q Consensus 357 l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 436 (576)
+|+|||||.+|++|+|+|||+++|++|++++++++.++.+..+++.+.++.+......|.+...+++++|++++
T Consensus 307 ~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~------ 380 (445)
T PRK11357 307 EYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD------ 380 (445)
T ss_pred HHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC------
Confidence 99999999999999999999999999999999999888888889999998888888889888888887775522
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 039800 437 PTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLL 516 (576)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (576)
.+++||+|..|+.|+++++.+.+++
T Consensus 381 -------------------------------------------------------~~~~~k~p~~~~~~~~~~~~~~~~~ 405 (445)
T PRK11357 381 -------------------------------------------------------YKPLWRTPAFGLMTTLAIASSLILV 405 (445)
T ss_pred -------------------------------------------------------CCCCcccCCchHHHHHHHHHHHHHH
Confidence 1245677788888888888887776
Q ss_pred hc----CChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 517 GS----LDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 517 ~~----~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.. ....++.....++++|+++|+.+++|+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 406 ASTFVWAPIPGLICAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhhhHHhheechh
Confidence 43 233344556778888999997766654
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2e-51 Score=434.27 Aligned_cols=424 Identities=34% Similarity=0.553 Sum_probs=365.9
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+||+++.++.+.+.++.++|+|++..++..... +|+..+++|+++++..++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999987766 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV---PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
..|++.+|.+++.+....+.....+++++..+++. +.+.+... .+.++......+++++++++++|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc---CCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999998877652 21111000 0001111124567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSV 287 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 287 (576)
|++.+.+.++++.++++++.++.+ +..++.++.+.++.++..++...+|+|.|+|.+.+++||+|||+|++||++..++
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 999999999999987777766665 5556666667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCC
Q 039800 288 IIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVV 366 (576)
Q Consensus 288 ~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 366 (576)
.++.++|++..+......|.+++. ++.|+.++.+ ..++++...++.+..+++.+++.++.+.+.||+++++||||.+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 314 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGY--DLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLL 314 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999988888887764 4568887877 5566888999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHH
Q 039800 367 PAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFS 446 (576)
Q Consensus 367 P~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 446 (576)
|++|+|+|||+++|++|++++++++.++....+++.+.++.+...++.|++.+++.+++|+|+|+.+||
T Consensus 315 P~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~----------- 383 (429)
T TIGR00909 315 PGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRA----------- 383 (429)
T ss_pred cHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----------
Confidence 999999999999999999999999988877778999999999999999999999999999887664444
Q ss_pred HHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHH
Q 039800 447 VTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVR 526 (576)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (576)
||.|..|+.+.+.+..+.++....++.++..
T Consensus 384 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (429)
T TIGR00909 384 -------------------------------------------------FRCPLVPVLPVLVVSYCIYLLLNLGPGTTVW 414 (429)
T ss_pred -------------------------------------------------CCCCcchHHHHHHHHHHHHHHHHccHHHHHH
Confidence 4445666777777777778777888888889
Q ss_pred HHHHHHHHHHHHHHh
Q 039800 527 FGFFSALAVLVYLLY 541 (576)
Q Consensus 527 ~~~~~~i~~~~y~~~ 541 (576)
..+|+++|.++|..|
T Consensus 415 ~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 415 FLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998654
No 12
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=414.82 Aligned_cols=420 Identities=23% Similarity=0.387 Sum_probs=370.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
+++++||.++.+|...+++|+.||+|.|...+..++. +||+.++++++++++.+.+.-.++|+..+-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4567999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||..||++||.||+.++....++..+.+.|++.+++.. +.| +.+++++.+...+|+.++|.+
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P~W---------------v~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-PQW---------------VFALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765 444 788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------CC-----CCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK-------DP-----KNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~-------~~-----~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+..|..+..+|++.++.+++.++.. +. +|. .+|.|+|+.|++.++..++|+|.|.|.+...++|+
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999999999998887664 11 111 36789999999999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|.+|||+........++|+...+++....|++++++ ++|+.+.++ ..|.++...++++.++.+.++++|+.++
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~--~iGi~~Aa~i~N~VVLtAa~S~~NSgly 307 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFS--LIGIPFAAGIMNFVVLTAALSALNSGLY 307 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHH--HcCCcccccceeEEEeechhhccccccc
Confidence 9999999999999999999999999999999999999865 579999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|++|+||..||.++|+| |+|+|+++++++.+...+...+ ..|+.+.+..+...+..|+++.++.+++
T Consensus 308 stsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~ 386 (462)
T COG1113 308 STSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKL 386 (462)
T ss_pred ccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8999999999998776554444 4689999999999999999999999999
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHH
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIP 505 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (576)
|+++++ ..++.+||.|..|+..
T Consensus 387 rk~~~~----------------------------------------------------------~~~~~~fkm~~~p~~~ 408 (462)
T COG1113 387 RKAKPA----------------------------------------------------------EGKKLKFKMPLYPFTN 408 (462)
T ss_pred Hhcchh----------------------------------------------------------cccCcccccccccHHH
Confidence 985443 2445667777788888
Q ss_pred HHHHHHHHHHHhcC--C---hhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 506 CISIFLNIFLLGSL--D---GPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 506 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++++++..+++..| + ........+|+++-.+.|+.+++|+
T Consensus 409 ~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777776666654 1 1234455566666666665555444
No 13
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.7e-51 Score=434.33 Aligned_cols=364 Identities=20% Similarity=0.360 Sum_probs=310.3
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
+++++||+++.++++.+++|.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4567999999999999999999999999999998876 899899999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||++||.+++.+....+.+...++.|...+++.. +. ....++++++...+|++|+|..
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV-PH---------------WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-Ch---------------HHHHHHHHHHHHHHHHccchhH
Confidence 9999999999999999998888887777888887655321 11 1345566677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------C---CCCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK------D---PKNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~------~---~~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|.+++.+++..++++++.++.. + ..+. .++.+.++.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999999887665544210 1 1111 12345667788999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+|||+..+++.+.++|++..+......|++++.. +.|+..+++ ..|.++...++.+..+.+.+++.+++++
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQ--HMGITFAASILNFVVLTASLSAINSDVF 303 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888753 568888876 7787888888888888999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.++..+...+ ..++.+.++.+...++.|.+++++.+++
T Consensus 304 ~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~l 382 (457)
T PRK10580 304 GVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAF 382 (457)
T ss_pred HHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6899999999997655443222 3477899999999999999999999999
Q ss_pred hhccCC
Q 039800 426 RYVNLG 431 (576)
Q Consensus 426 r~~~~~ 431 (576)
|+++++
T Consensus 383 r~~~~~ 388 (457)
T PRK10580 383 RRRLPP 388 (457)
T ss_pred HHHHHh
Confidence 887543
No 14
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.7e-51 Score=438.45 Aligned_cols=399 Identities=20% Similarity=0.253 Sum_probs=327.4
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||+++.++.+++++|.+||+|+|..++..+.. +||. .+++|+++++++++.+++|+|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4567999999999999999999999999999999887 8886 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+|+.+||.+||.+++.+....+........++..+++. .+. .....+++.+++.+|++|+|.
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD-TPG---------------WIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-Cch---------------HHHHHHHHHHHHHHHHHcchh
Confidence 9999999999999999988777665544444444443321 111 134556667788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc------C-----CCCCC---CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK------D-----PKNPS---GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~------~-----~~~~~---~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
.+++|.+++..|+..++.+++.++.. + ++++. +..+.++.+++.+....+|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999998876666544322 1 11221 1113456666666666789999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------CCchHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID---------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
|||+||+|||+..++..+.++|++..++.....|.++.+ ..+|+..+++ ..|.++...++.+.++++.+
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~--~~g~~~~~~ii~~~il~a~~ 309 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQ--HAGLLSAAAVMNAVILTAVL 309 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHH--HcCChhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888865431 2468888888 66767788899999999999
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHH
Q 039800 344 TSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYM 417 (576)
Q Consensus 344 ~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 417 (576)
++.|+.+++.||++|+|||||.+|++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|++
T Consensus 310 ~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~ 388 (489)
T PRK10836 310 SAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLG 388 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 6899999999999988766554 23567888899999999999
Q ss_pred HHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 039800 418 VANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWG 497 (576)
Q Consensus 418 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (576)
.+++.+++||+.+++.+ ..++++||
T Consensus 389 ~~~a~l~~R~~~~~~~~-------------------------------------------------------~~~~~p~~ 413 (489)
T PRK10836 389 IAISHYRFRRGYVLQGH-------------------------------------------------------DLNDLPYR 413 (489)
T ss_pred HHHHHHHHHHHHHhcCC-------------------------------------------------------CcCCCCCc
Confidence 99999998886432211 01236788
Q ss_pred cccccHHHHHHHHHHHHHHhcCCh
Q 039800 498 VPLMPWIPCISIFLNIFLLGSLDG 521 (576)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~ 521 (576)
.|.+|+.|+++++.+++++....+
T Consensus 414 ~p~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 414 SGFFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998886544
No 15
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=3.7e-51 Score=434.28 Aligned_cols=368 Identities=21% Similarity=0.320 Sum_probs=316.9
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+.++||+++.+++.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 455899999999999999999999999999999887 8888888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||++||.++++++...+.+....++++..+++.. + ...++++++++.+.+|++|+|..+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-P---------------LWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-c---------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999888888888765421 1 225677778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------CC---CCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK--------DP---KNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~--------~~---~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
++|.+.+.+|++.++.+++.++.. +. .++ .++.|+++.++..++..+.|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 999999999999887666655421 11 111 1234567778999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC--CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID--AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLG 352 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (576)
|+||+|||+..+.....++|++..+......|+++.+ +++|+.++.+ ..|.++...++.+.++++.+++.++.+++
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~--~~g~~~~~~ii~~~~~~~~~~~~~~~~~~ 307 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLE--LLGIPHAKLIMDFVVLTAVLSCLNSALYT 307 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877777766543 3348888877 77878888899999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 353 QARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRR 426 (576)
Q Consensus 353 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 426 (576)
.||++++|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++++++.+++|
T Consensus 308 ~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r 386 (452)
T TIGR01773 308 TSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMR 386 (452)
T ss_pred HHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 7899999999998888765544 23567888888888999999999999999
Q ss_pred hccCCCCCCC
Q 039800 427 YVNLGTTNPQ 436 (576)
Q Consensus 427 ~~~~~~~~~~ 436 (576)
++.|+++||+
T Consensus 387 ~~~~~~~~~~ 396 (452)
T TIGR01773 387 KKLKANGEAI 396 (452)
T ss_pred HHHHhcCCCC
Confidence 8877655553
No 16
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.5e-51 Score=434.50 Aligned_cols=364 Identities=24% Similarity=0.397 Sum_probs=316.9
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
++++||+++.++..+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|.+||.|+|+++.
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 346899999999999999999999999999999887 8889899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||..||++||.+++++....+.+....+++++.+++. .+.| ....++.++++.+|++|+|..+
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~---------------~~~~i~~~~~~~lN~~gv~~~~ 149 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPTW---------------VSAAVFFVVINAINLTNVKVFG 149 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHH---------------HHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998888888776542 2222 4566667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---C-------CCCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK---D-------PKNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~---~-------~~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
++|.+.+.+|++.++++++.++.. + ..+. .++.|+++.++..++..+.|+|.|+|.+++++||+|||
T Consensus 150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 999999999998876655543221 1 1111 22345667788888888999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQA 354 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 354 (576)
+|++|||+..++....+.|+..........|++++.. ++|+.++++ ..|.++...++.+..+.+.+++.++.+++.|
T Consensus 230 ~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~--~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 230 EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFH--ELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHH--HcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777888887753 579999888 7777888889999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039800 355 RYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 355 R~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 428 (576)
|++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+.+.+++|.+++++.+++||+
T Consensus 308 R~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6799999999999988766553 4588899999999999999999999999987
Q ss_pred cCCC
Q 039800 429 NLGT 432 (576)
Q Consensus 429 ~~~~ 432 (576)
++++
T Consensus 387 ~~~~ 390 (456)
T PRK10238 387 KQEQ 390 (456)
T ss_pred HHhc
Confidence 6653
No 17
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-52 Score=421.90 Aligned_cols=462 Identities=18% Similarity=0.287 Sum_probs=368.6
Q ss_pred cCCchHHhhhhhccCCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 34 VSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFA 112 (576)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~ 112 (576)
+++|++++.+++ +|||+||++++++.+.++++.+- -.|+-.+....+...|+|.+.|+|++++++.++++++++|++
T Consensus 30 ~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 30 DDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred ccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455566666 99999999999999999999772 244444444455443445689999999999999999999999
Q ss_pred hcCcCCCchhHHHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHH
Q 039800 113 VDMPVAGGAFSYLRV----TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVL 188 (576)
Q Consensus 113 ~~~p~~Gg~y~~~~~----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (576)
+++|++||.|.|+.. .+||..+|++||...+++....++..++.++.+.......++.+ .++++ +..++
T Consensus 108 Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y------~~~~~-~~~~v 180 (550)
T KOG1289|consen 108 SAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNY------EPTNY-HQFGV 180 (550)
T ss_pred hhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCC------cccce-EeehH
Confidence 999999999999975 56778899999999999999999999999999987765443332 12222 23478
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC--------------CCCCCCCCCchhHHHHHHH
Q 039800 189 AVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DP--------------KNPSGFFPYGAKGVFNGAA 253 (576)
Q Consensus 189 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--------------~~~~~~~~~g~~~~~~~~~ 253 (576)
..++..+..++|+.+.|...+++.+.....++.+++..+..... +. +|.+++.+.|| .+..++.
T Consensus 181 ~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~ 259 (550)
T KOG1289|consen 181 FEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFF 259 (550)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhc
Confidence 88889999999999999999999999999999988877776665 11 11123333444 4788888
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--C-CC--CchHHHhhccCCCChh
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--I-DA--EAPFSGAFSGKSDGWK 328 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~-~~--~~p~~~~~~~~~~g~~ 328 (576)
...|.+.|+|+++|++||+|||+|+.||||+.++.+..++.....+.+....++|. + ++ ..|+.+.+.+ ..|.+
T Consensus 260 ~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~-~lg~k 338 (550)
T KOG1289|consen 260 NPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQ-ALGKK 338 (550)
T ss_pred cceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHH-hcCCC
Confidence 89999999999999999999999999999999999999999999999888777532 2 32 4799999987 88866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHH
Q 039800 329 WVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLT 401 (576)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~ 401 (576)
+. ..+....+++.+.+..+.+.+.||+.|+.||||.+| ++++|+||++++|.+|+++..+++.++.++ .+++
T Consensus 339 ~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~ 417 (550)
T KOG1289|consen 339 GA-VFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFN 417 (550)
T ss_pred ce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 55 667777777778888899999999999999999999 999999988899999999999999887776 5799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHH
Q 039800 402 VLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQ 481 (576)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (576)
++.+++.++...+|..+.++.+..+|+ .-++.| |++ ||.+. ++++.+++|.+++.
T Consensus 418 Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp--------------------~~l---Gk~s~-p~~~i~v~w~lf~~ 472 (550)
T KOG1289|consen 418 ALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGP--------------------FNL---GKFSK-PIGIIAVLWVLFMI 472 (550)
T ss_pred HHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCC--------------------ccc---ccccc-chHHHHHHHHHHHH
Confidence 999999999999999999888776655 222223 444 44444 67778899999999
Q ss_pred HHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccccccccCcCC
Q 039800 482 IFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFDAEEDGSFG 556 (576)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~ 556 (576)
+++++|+..+...+ +||| +.+++++..+.++++|+.++||. .++++....+
T Consensus 473 vil~fP~~~pvT~~----------------------~MNy-a~VV~gg~~lf~li~~~~~~~k~-f~gP~~~~~~ 523 (550)
T KOG1289|consen 473 VILCFPSVYPVTAD----------------------NMNY-ACVVYGGVMLFCLIYYFVSARKW-FKGPIPSVLE 523 (550)
T ss_pred HHHhCCcccCCCcc----------------------cCce-EEEeehhhhhhhhheeeeeccee-ecCCcccccc
Confidence 99999998555443 4455 44777888889999998886665 6666554433
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1.3e-50 Score=430.84 Aligned_cols=365 Identities=21% Similarity=0.344 Sum_probs=314.5
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.+++||+++.++...+++|.+||+|+|..++..+.. +||..+++|++++++.++.+.+++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345999999999999999999999999999999887 8888889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||..||++||.+++++....+.++...+.|+..+++.. +. ..++.+++.+++++|++|+|..+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-~~---------------~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-SD---------------WVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cH---------------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998777777777888887665421 11 14556677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---C---C----CCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK---D---P----KNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~---~---~----~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++|++.+.+|++.++.+++.++.. . + .++ .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 999999999999988887776642 1 1 111 12345677789999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+||++..+.+.+.++|++...+.....|++++.. ++|+.++++ ..|.++...++.+..+++.+++.++.+.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~s~~~~~~~~~~ 315 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFV--LVGLPAAASVINFVVLTSAASSANSGVF 315 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888888744 578988888 6677888889999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHH---HHh-----hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAI---ALF-----TDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.++..+. ... ..++.+.++.+....+.|++.+.+++
T Consensus 316 ~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~ 394 (469)
T PRK11049 316 STSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYL 394 (469)
T ss_pred HHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 5699999999987765431 112 24777888888889999999999999
Q ss_pred HHhhccCCCC
Q 039800 424 YRRYVNLGTT 433 (576)
Q Consensus 424 ~~r~~~~~~~ 433 (576)
++|+++|+.+
T Consensus 395 ~lr~~~p~~~ 404 (469)
T PRK11049 395 VYRKQRPHLH 404 (469)
T ss_pred HHHHhhhhcC
Confidence 9999887754
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2.2e-50 Score=425.37 Aligned_cols=357 Identities=18% Similarity=0.255 Sum_probs=302.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.+|+++.++++.+.+|.++|+|+|..++... . +|+..+++|+++++.+++.+++++|+++++|++||.|+|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4688999999999999999999999998864 4 688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
.+||.+||.+|................|+..+++...+.+ ...+++++++++++++|.+|+|..++++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI------------PAGIACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH------------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999987766666666777788877664321111 1124566677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCC----CCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPK----NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
.+.+.++++.++.+.+.+..+ +++ ++.+..+.++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~ 227 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLG 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHH
Confidence 999988887776655555443 322 222223355778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..++.++|++..++.....|+++++ +++|+.++++ ..++++...++.+..+++++++.+++++..+|..+++||||.
T Consensus 228 ~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~--~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~ 305 (435)
T PRK10435 228 TGLAGIIYIAATQVISGMFPASVMAASGAPFAISAS--TILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGN 305 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999988884 5679998887 555588888999889999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHH----h--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIAL----F--------TDLTVLLNLVSIGTLFVFYMVANAVIYRR 426 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~----~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 426 (576)
+||+|+|+| |+|+|++|++++.++..++.. + ..++.+.++.+...+..|++++++.+++|
T Consensus 306 lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 306 FPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred ccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 799999999998876644331 1 25788999999999999999999988543
No 20
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.2e-49 Score=424.48 Aligned_cols=414 Identities=19% Similarity=0.244 Sum_probs=323.2
Q ss_pred CCCCCccccChHHHHHHHhhhh-hhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGM-VGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
++|||||+++.++.+.++++.+ ++.|++..++..+.. +||..+++|+++++..++.+++++|+++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 8899999999999999999986 789999999999886 89999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV-----PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVIC 201 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (576)
+.+||.+||++||.+++++....+........++..+.+. ..+.+. .+....+..+++.+++++.+++|+
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~in~ 160 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT-----SPSGAANAVLLGSVLLVLTTVINC 160 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc-----CCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777666665555443210 001110 011111233677777888999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC---CCC----CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhc
Q 039800 202 YSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKN---PSG----FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVK 273 (576)
Q Consensus 202 ~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~---~~~----~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 273 (576)
+|+|..+++|++.+.++++.++++++.++.+ +.+. +.. ..+....++..+....+|+|.|+|.+++++||+|
T Consensus 161 ~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 161 IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 9999999999999999988877766665544 2110 111 1111134566778888999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCC-c-CCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 274 NPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYD-M-IDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 274 ~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~-~-~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
||+||+||++..++.++.++|.+..+......+.. + ..++.+.+.++.+ ..|.++.. .+....+++.+++.++.+.
T Consensus 241 nP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~~-~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 241 NPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSA-VLDSPWGT-VLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHH-HhCcHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777766655431 1 1122223344443 56655554 4445567788889999999
Q ss_pred hHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
+.||++|++||||.+| ++|+|+|||+++|++|+++..+++.++.++ ..|+.+.++.+.....+|+++.++.+.
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~ 398 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLL 398 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 589999999999999999999988776665 357889999999999999999888887
Q ss_pred Hhhcc--C--C--CCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 039800 425 RRYVN--L--G--TTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKP 493 (576)
Q Consensus 425 ~r~~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (576)
+|+|. | + +++| |++ |++|. ++|+++++|.++..++.++|+..+.+
T Consensus 399 ~~~~~~~~~~~~~~~g~--------------------f~l---g~~g~-~vn~~a~~~~~~~~v~~~~P~~~~~~ 449 (475)
T TIGR03428 399 RRLRGWPRGDQTDPAGL--------------------FSL---GRWGL-PVNILAVVYGALMVVNLSWPRPEVYD 449 (475)
T ss_pred HHHhccCCccCCCCCCC--------------------CCC---chhHH-HHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 66543 1 1 2233 444 45666 99999999999999999999864433
No 21
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-51 Score=411.30 Aligned_cols=378 Identities=21% Similarity=0.382 Sum_probs=331.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-H-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-A-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
++.+++|+++.+..+.+.+++++|+|+|..+..+... +|+ + ++..|+.++++++.-+++|+||++.+|++||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4556889999999999999999999999999999887 665 3 777899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc
Q 039800 126 RVTFGEFAAFLTGSNL-ILEYVMSNAAVARGFASY-FGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS 203 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (576)
.++||+.+||...|.- .+.+....+..+..+++| +...++. .. .+......++.+++.+++++|+.+
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--c~---------~p~~~~~lla~~~l~~lt~~n~~~ 153 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--CD---------VPRVASKLLAAALLVLLTLINSFS 153 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--CC---------CchHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999954 455566669999999999 5555541 11 111123478889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCC--CC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSG--FF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~--~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
+|+..++|.+++..|++.+.++++.++.. +.+|++. +. ..+...+..++...+|+|.|||.....+||+|||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 99999999999999999999999999886 3343321 22 2234557788889999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
+||+|||+..++.+++++|++.+++.....++|++.+++.+..-+.+ ..++.+. +.+.+.+.++.++++|+.+.+.||
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~-~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFAD-RILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHH-HhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999998766666666665 5554555 999999999999999999999999
Q ss_pred HHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 356 YMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 356 ~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
+++++||+|++|+.|+++|+++.+|..++++++..+++..+.++++.++|..++...+.+.+.+++++++|+|+|+++||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchh
Q 039800 436 QPTL 439 (576)
Q Consensus 436 ~~~~ 439 (576)
+|+.
T Consensus 392 iKvp 395 (479)
T KOG1287|consen 392 IKVP 395 (479)
T ss_pred Eeee
Confidence 8843
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=2e-49 Score=422.64 Aligned_cols=417 Identities=21% Similarity=0.274 Sum_probs=339.6
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRVTF 129 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 129 (576)
++|+++.++.+.++++.++|+|+|..++..... +|+. .+++|++++++.++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478899999999999999999999999887765 7875 7889999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||..||++||.+++.+............+++..+++..... +.....+.+++++++.+.+|++|+|..+|
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG----------NPVPSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999988887777777777877766521100 00112256667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCC----CC----CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNP----SG----FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~----~~----~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
+|.+.+..+++.++++++.++.. +.+++ .+ ..++++.++..++...+|+|.|+|.+++++||+|| +||+|
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iP 232 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccch
Confidence 99999999999888877777653 22222 11 11224567888899999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCch-HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAP-FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
|++..++.+++++|++...+.....|.+++. .+.| ..++.+ ...+++...++.+.++++.+++.++.+.+.||++|
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~--~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLE--MIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888764 4567 666666 33447788889999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTT 433 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 433 (576)
+|||||.+|++|+|+|| +++|++|++++.+++.++.+. .+++.+.++.+...++.|++.+++.+++|+|++..+
T Consensus 311 amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~ 389 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK 389 (473)
T ss_pred HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999995 599999999999887654442 468899999999999999999999999887752100
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHH
Q 039800 434 NPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNI 513 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (576)
+ +.|..++.+.++.+.+.
T Consensus 390 ~--------------------------------------------------------------~~~~~~~~~~l~~~~~~ 407 (473)
T TIGR00905 390 I--------------------------------------------------------------KNRKALIVGVIACVYSI 407 (473)
T ss_pred c--------------------------------------------------------------ccchHHHHHHHHHHHHH
Confidence 0 01234556777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 514 FLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++....+........+++++|+..|++++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 408 WLLYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666666666667778888988887655543
No 23
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.1e-49 Score=427.83 Aligned_cols=376 Identities=24% Similarity=0.394 Sum_probs=310.4
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-H-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-A-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
++++++|+++.++.++++++.++|+|+|..++..+.. +|+ + .+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 5678999999999999999999999999999988776 665 3 467899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhCC-CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 039800 126 RVTFGEFAAFLTGSNLIL-EYVMSNAAVARGFASYFGT-AIGV-PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICY 202 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (576)
++.+||..||+.+|..+. .+....+..+..+++|+.. .++. ..+.|. ..+++++++++.+++|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~------------~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA------------IRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH------------HHHHHHHHHHHHHHHHHh
Confidence 999999999999998765 3345556666666777543 2321 111221 226777788889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcc-C---CC--CCC-CCC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhc
Q 039800 203 STRDSSVVNMILTVLHILFIAFVILMGFWK-D---PK--NPS-GFF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVK 273 (576)
Q Consensus 203 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~---~~--~~~-~~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 273 (576)
|+|..+++|.+++.++++.++++++.++.. . .. ++. .+. +.+..++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 999999999999999999888777766543 1 11 111 111 13456788899999999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039800 274 NPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQ 353 (576)
Q Consensus 274 ~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (576)
||+|++||++..++++++++|++..++.....|.+++..+.+....+.+...| ....++.+...++.+++.++.+.+.
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g--~~~~~i~~~~~is~~~~~~~~~~~~ 340 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG--VMSWAMPALVGLSCFGSVNGSLFSS 340 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888775544333333210333 4566778888889999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 039800 354 ARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTT 433 (576)
Q Consensus 354 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 433 (576)
||++++|||||.+|++|+|+|||+++|+++++++++++++....++...+.++.+....+.|++..++++++|+|+|+.+
T Consensus 341 sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~ 420 (501)
T TIGR00911 341 SRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMN 420 (501)
T ss_pred HHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCC
Confidence 99999999999999999999999999999999999888777667777778888888889999999999999999999988
Q ss_pred CCCch
Q 039800 434 NPQPT 438 (576)
Q Consensus 434 ~~~~~ 438 (576)
||+|.
T Consensus 421 rp~r~ 425 (501)
T TIGR00911 421 RPIKV 425 (501)
T ss_pred CCccC
Confidence 88873
No 24
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.2e-49 Score=426.26 Aligned_cols=443 Identities=17% Similarity=0.215 Sum_probs=342.5
Q ss_pred CCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
+++++||+++.++.+.++++.+. ..|++...+..... +|| ..+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 78889999999999999999652 37888777766655 788 4899999999999999999999999999999999999
Q ss_pred HHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc--cccccCCCCCCCchhhHHHHHHHHHHHHH
Q 039800 126 RVTFG----EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAK--WRLKVDGLPDGFNEIDVLAVAVVLVITFV 199 (576)
Q Consensus 126 ~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (576)
++.+| +..||++||.+++++....+......++++........+. +. ++.+ ....+.++++++++++
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTRW-HIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccCc-hhhhhHHHHHHHHHHH
Confidence 99987 5679999999999999999988888888887654321111 10 1111 1125666777889999
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC----CC--CCC-------CCCCchhHHHHHHHHHHHHHhhhhhH
Q 039800 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DP----KN--PSG-------FFPYGAKGVFNGAAMVYLSYIGYDAV 265 (576)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~----~~--~~~-------~~~~g~~~~~~~~~~~~~~f~G~e~~ 265 (576)
|++|+|..++++++...++++.++++++..+.. +. .+ +.+ +.+.++ +++.++..+.|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988888876555444332 11 11 111 122233 4667777788999999999
Q ss_pred hhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCCcC-CC--CchHHHhhccCCCChhHHHHHHHHHHHHH
Q 039800 266 STMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM-PYDMI-DA--EAPFSGAFSGKSDGWKWVSNVIGVGASFG 341 (576)
Q Consensus 266 ~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~-~~~~~-~~--~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (576)
++++||+|||+||+|||+..++.+..+++++..+...... +.+++ ++ +.|+.+++.+ ..|.++...++.+..+++
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~ 315 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYN-ALGNKAGAIFLLCLILVT 315 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHH-HhCCchHHHHHHHHHHHH
Confidence 9999999999999999999999887776665555444333 22322 22 3588888874 677667777888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHH
Q 039800 342 ILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFV 414 (576)
Q Consensus 342 ~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~ 414 (576)
.+++.++++.+.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+. ..++.+.++.+...++.
T Consensus 316 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 395 (482)
T TIGR00907 316 SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVS 395 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999988899999999999988776654 36889999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 039800 415 FYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPE 494 (576)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (576)
|.++.++.+++|++ ++++||++ .++++. .++..+++|..+..+..++|+..+.+.
T Consensus 396 y~~~~~~~l~~~~~-~~~~~~f~-----------------------lg~~~~-~~~~~~~~~~~~~~v~~~~P~~~p~~~ 450 (482)
T TIGR00907 396 YVIPIICKLAKGRN-TIAPGPFW-----------------------LGKYGF-FVNAVAVAWTVFSSVLFSFPPVLPVTP 450 (482)
T ss_pred HHHHHHHHHHhcCC-CCCCCCCc-----------------------CCcchH-HHHHHHHHHHHHHHhheeCCCCCCCCc
Confidence 99988877655444 56667765 233443 678889999999999999998633221
Q ss_pred ccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 039800 495 FWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFDA 549 (576)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 549 (576)
.++||. .+..++.++++.++|+.++||+ +++
T Consensus 451 ----------------------~~~ny~-~~~~~~~~~~~~~~~~~~~r~~-~~g 481 (482)
T TIGR00907 451 ----------------------ENMNYA-VVVFAGVLAISLVYWKYKGRKE-FTG 481 (482)
T ss_pred ----------------------ccCChH-hHHHHHHHHHHHHHheEeceee-ccC
Confidence 234553 3566788889999998887776 554
No 25
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=3.1e-49 Score=422.79 Aligned_cols=358 Identities=22% Similarity=0.305 Sum_probs=300.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRVTFG 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g 130 (576)
||+++.+++..+++|.++|+|+|..++..+.. +||. .+++|++++++.++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8885 7899999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|.+||++||.++++++...+.+....+.++..+.+. .+. .....++.++.+++|++|+|..+++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK-VNP---------------AVWIAIFYVFIVIINLFGVKGYGEA 143 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCH---------------HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999999998888888764331 111 1233455667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CC--C---------CCCCCCCC----chhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 211 NMILTVLHILFIAFVILMGFWK---DP--K---------NPSGFFPY----GAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~---~~--~---------~~~~~~~~----g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
|++.+.+|+..++.+++.++.. +. . +..++.+. ++.++..++..++|+|.|+|.+++++||+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 223 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh
Confidence 9999999988877666655432 11 0 11122222 25678889999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--C-C-------CCchHHHhhccCCCChhHHHHHHHHHHHHHH
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--I-D-------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGI 342 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (576)
|||+||+|||++.++..+.++|++..++.....|.++ + + .++|+..+++ ..|.++...++.++++++.
T Consensus 224 knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~s~ 301 (478)
T TIGR00913 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQ--NHGIKVLPHIFNAVILISV 301 (478)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHH--HcCCchHhHHHHHHHHHHH
Confidence 9999999999999999999999999888777778664 2 1 1267777666 7777888889999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHH
Q 039800 343 LTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFY 416 (576)
Q Consensus 343 ~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~ 416 (576)
+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|+
T Consensus 302 ~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~ 380 (478)
T TIGR00913 302 LSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWM 380 (478)
T ss_pred HHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 7899999999999887654332 2478899999999999999
Q ss_pred HHHHHHHHHhhccC
Q 039800 417 MVANAVIYRRYVNL 430 (576)
Q Consensus 417 ~~~~~~~~~r~~~~ 430 (576)
+.+++.+++|++.+
T Consensus 381 ~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 381 CICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887644
No 26
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-50 Score=426.99 Aligned_cols=486 Identities=33% Similarity=0.540 Sum_probs=374.1
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRV 127 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~ 127 (576)
++++||+|+.+|+.++++|.++|+|+|...+..+...+|++.+++++++++.+++.+++++|+++++|. +||.|.|+++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~ 104 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYR 104 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeee
Confidence 468999999999999999999999999999999998666779999999999999999999999999999 5999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH-hcchh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVIC-YSTRD 206 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 206 (576)
.+|+.+||.+||.|++.|++..+.++.+.+.+++.+.+ .+.+....++.+........+++++++.++.+-. .++|.
T Consensus 105 ~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 105 FVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 99999999999999999999999999999999999861 1122111122222211222333333333333333 56667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCC---------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPKNP---------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~---------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
...++++++.+.++.+.++++.|... |..++ .+|.|.++.|++.++..+.|+|.|+|.++..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 77777777777777777777777766 43333 357888899999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--CCCCc----hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--IDAEA----PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAM 350 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~~~~~----p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (576)
|++|+|+..++..+.++|++..+.+...+|+++ ++++. |+..+.+ ..+.+....++++++++++.+++|+.+
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~--~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG--NAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh--ccCccccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988 76655 4444444 444455556999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 351 LGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTD------LTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 351 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.+|.+++||+||.+||+|+++|+| |+|++|++++.+++.+..+..+ ++++.++.+++.++.|.++++++++
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLR 419 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHee
Confidence 99999999999999999999999966 9999999999999988877643 5999999999999999999999999
Q ss_pred HhhccCCCCC-----CCc-----hhHHHHHHHHHHHHHHHhhccC-CC----CchhhHHHHHHHHHHHHHHHHHHHhccC
Q 039800 425 RRYVNLGTTN-----PQP-----TLSFLFLFSVTSIIFTLIWHFV-PP----CKSKAFMLGASAIVAIAVLQIFHCVVPQ 489 (576)
Q Consensus 425 ~r~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (576)
+|+..+.+.+ +++ +........+..+.....|... +. ..++.....+...+++++...+....+.
T Consensus 420 ~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~ 499 (554)
T KOG1286|consen 420 FRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKP 499 (554)
T ss_pred eeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecc
Confidence 9987543321 222 3344444444444444444332 22 2233322222322233333322222221
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHhcCChhHHH--HHHHHHHHHHHHHHH-hhhccc
Q 039800 490 AKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYV--RFGFFSALAVLVYLL-YSVHAS 546 (576)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~ 546 (576)
... ..|+.|.+.+..+..++..++..++. ....|..+++..|.. |+.+|+
T Consensus 500 ~~~-------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 552 (554)
T KOG1286|consen 500 TNT-------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHS 552 (554)
T ss_pred ccc-------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhcc
Confidence 110 46677778888888888887777888 888888998888876 776664
No 27
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.4e-48 Score=412.47 Aligned_cols=346 Identities=19% Similarity=0.294 Sum_probs=300.9
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLIL 143 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 143 (576)
+++|.+||+|+|..++..++. +||..+++|++++++.++.+++++|+++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999999887 8888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q 039800 144 EYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIA 223 (576)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 223 (576)
+++...+.+....+.+++.+.+. .+ ...++.+++++.+.+|++|+|..+++|.+.+.+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li 144 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVPG-IP---------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAIL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-Cc---------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 99999988887777766654321 11 226778888889999999999999999999999999888
Q ss_pred HHHHHhhcc----CC----CCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 224 FVILMGFWK----DP----KNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 224 ~~~i~~~~~----~~----~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
.+++.++.. ++ .++ .++.|+++.++..++..++|+|.|+|.+++.+||+|||+||+||++..++..
T Consensus 145 ~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~ 224 (446)
T PRK10197 145 AFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWR 224 (446)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 877766542 11 111 1344667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCCC--CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc
Q 039800 290 VTVLYCLMAASMSMLMPYDMIDA--EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 367 (576)
+.++|++..++.....|+++.+. ..++..+++ ..|.++...++.+.++++.+++.|+++++.||++|++||||.+|
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP 302 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLE--LLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP 302 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999888888876543 346667777 77878889999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 368 AWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVN 429 (576)
Q Consensus 368 ~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 429 (576)
++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+++++.+++||+.
T Consensus 303 ~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 303 AVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 8899999999998777654433 25788999999999999999999999998863
No 28
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=5.4e-48 Score=404.90 Aligned_cols=354 Identities=18% Similarity=0.256 Sum_probs=291.4
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+++++.+.+.+++++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999998887 88889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
.+||.++..+....+.......+++...++.+. +. ...++.++.++++++|++|+|..+|+|.+++
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--WQ------------LLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--ch------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988777666655556677776654321 11 1245667777889999999999999999888
Q ss_pred HHHHHHHHHHHHHhhccCCCCC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHH
Q 039800 216 VLHILFIAFVILMGFWKDPKNP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVL 293 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~ 293 (576)
.+.+..+..+...+- .+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+...+.++
T Consensus 146 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~l 224 (410)
T PRK11021 146 LLIVALVVAIWWAGD-IKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLV 224 (410)
T ss_pred HHHHHHHHHHHHHcC-CchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHH
Confidence 655443332221111 122222 22344578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcC-CCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhh
Q 039800 294 YCLMAASMSMLMPYDMI-DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFAR 372 (576)
Q Consensus 294 y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~ 372 (576)
|++.+++.....+.++. ..+.|..+++++ ..| ++...++.+..+.+.+++.++++.+.||++++|||||.+||+|+|
T Consensus 225 Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 225 YWACTVVVLHFPAYGDKQAAAASLPGIFVQ-LFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHhcCCCcchhhccccHHHHHHH-HhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 99999887766655443 345677777764 556 445667788888999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039800 373 VHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 373 ~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 428 (576)
+| |+|+|+++++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++
T Consensus 303 ~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 303 LS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred hc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 6899999999998877655433 4788899999999999999999999988754
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=2.4e-47 Score=406.10 Aligned_cols=411 Identities=18% Similarity=0.259 Sum_probs=331.2
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCC-CchhHHHHHHhch
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVA-GGAFSYLRVTFGE 131 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~-Gg~y~~~~~~~g~ 131 (576)
|++++++.+++.++.++|+|+|..++..+.. +||. .+++|+++++.+++.+++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6799999999999999999999999988776 7775 78899999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..||++||.+|+++.............++..+++..... ........+.+++++++.+|++|+|..+++|
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG----------NNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999988777777666666666655321100 0001124555666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCC-----C----C-CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPS-----G----F-FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~-----~----~-~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
.+.+..|++.++++++.++.. +.+++. + + .+..+.++..++..++|+|.|+|.+++++||.|| +||+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip 228 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccch
Confidence 999999999988877766543 221111 0 0 1122456777888999999999999999999999 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-Cch-HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAP-FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
|++..++..+.++|++.+++.....|.+++++ ++| ..++++ ...+++...++.++++++.+++.++++...||++|
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~--~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE--HMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH--HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888877643 445 666777 44447888999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLG-T 432 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~ 432 (576)
+|||||.+||+|+|+| |+|+|+++++++.+++.++.+. ..++.+.++.+...++.|.+++++.+++|+|+++ +
T Consensus 307 a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~ 385 (468)
T TIGR03810 307 LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQER 385 (468)
T ss_pred HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999 7899999999998877555433 4688899999999999999999999998876531 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHH
Q 039800 433 TNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLN 512 (576)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (576)
.|++ .++.+.++.+.+
T Consensus 386 ~~~~----------------------------------------------------------------~~~~~~l~~~~~ 401 (468)
T TIGR03810 386 GRRK----------------------------------------------------------------QLLIGLVALLYA 401 (468)
T ss_pred chhh----------------------------------------------------------------hHHHHHHHHHHH
Confidence 1111 134667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHhhh
Q 039800 513 IFLLGSLDGPSYVRFGFFSALAVLVYLLYSV 543 (576)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~ 543 (576)
.+.+...++.......+.+++|+..|++.+|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 402 VWLIYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777767777778888888855333
No 30
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=7.4e-46 Score=395.55 Aligned_cols=434 Identities=18% Similarity=0.284 Sum_probs=321.1
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhhcCcCCCchhHHHHHHhchh
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAVDMPVAGGAFSYLRVTFGEF 132 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 132 (576)
||++.++++.+.+..+++.... + .. +. .|+..+++|++++++. ++.+++++||++++|++||.|.|+++++|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~-~~-a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--P-AE-AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--h-HH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4599999999998888663322 2 22 23 7888888999999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 039800 133 AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM 212 (576)
Q Consensus 133 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (576)
+||+.+|.+|+++....+......+..+....+... . .+..+.+......+.+++.++.+.+|++|+|..+++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999987666554433333332211100 0 01111111111245556667788999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhhcc----C-CC---CCCCCCCC--chhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhh
Q 039800 213 ILTVL-HILFIAFVILMGFWK----D-PK---NPSGFFPY--GAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPI 281 (576)
Q Consensus 213 ~~~~~-~l~~~~~~~i~~~~~----~-~~---~~~~~~~~--g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ 281 (576)
+...+ +++.++++++.++.. + .. ++.++.|+ ++.++..+. ..+|+|.|+|.++.++||+|||+||+||
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhH
Confidence 87554 455544444444332 1 10 11122232 233333332 4578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCch----HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 282 GVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP----FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 282 ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
|+..++.++.++|++.++++....|+++...+.+ +.+.++ ..|.++...++.+...++.+++.++++.+.||++
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~ 307 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFH--WAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGM 307 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887654333 444555 5566778888888888899999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF--------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVN 429 (576)
Q Consensus 358 ~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 429 (576)
+++||||.+|++|+|+| |+|+|+++++++.+++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+
T Consensus 308 ~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~ 386 (474)
T TIGR03813 308 LAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQ 386 (474)
T ss_pred HHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 8999999999998876543322 23678888888889999999999999999988
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHH
Q 039800 430 LGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISI 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (576)
|+++|||| + +.++++.+.+++.++++.++..++.++|+.......
T Consensus 387 ~~~~rpf~--------------------~-p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-------------- 431 (474)
T TIGR03813 387 PDRPRPYR--------------------I-PGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGS-------------- 431 (474)
T ss_pred CCCCCCeE--------------------e-cCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCc--------------
Confidence 88888876 1 234455568899999999999999999987443221
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 510 FLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++|| +.+.+++.+++..++|+.|+||+
T Consensus 432 --------~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 432 --------PTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred --------hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344 33555666667777777776554
No 31
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=6.8e-45 Score=388.67 Aligned_cols=401 Identities=16% Similarity=0.221 Sum_probs=298.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhcCc-CCCchhHHHHHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVDMP-VAGGAFSYLRVTFG 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g 130 (576)
+|+++.++++.+.++.+.+ +...+ .. ...|...+..|++++++ .++.+++++||++++| ++||.|+|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~--a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TF--ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5679999999999988864 33223 22 23677777778887776 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
+++||+++|.+|+......+.........+...+..+. ++.+.....+..++++++++++|+.|.|...++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~---------~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPA---------LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999998876555443333333333322110 001000122455566778899999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcc----CCC----CCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 211 NMILTVLHILF-IAFVILMGFWK----DPK----NPSGFFPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 211 ~~~~~~~~l~~-~~~~~i~~~~~----~~~----~~~~~~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
+++.....++. ++++++.++.. ++. +..++.|.. ..+....+...+|+|.|+|.+++++||+|||+||+|
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 99876654443 33333333222 111 112333321 123444555578999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchH----HHhhccCCCC--hhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPF----SGAFSGKSDG--WKWVSNVIGVGASFGILTSLLVAMLGQA 354 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~s 354 (576)
||++.+++++.++|.+..+.+....|+++++.+++. .+.+. ..+ .++...++.+..+++.+++.++++.+.|
T Consensus 229 rAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~s 306 (507)
T TIGR00910 229 LAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLIL--HFAHEIEWLVKVIAALIAFGVLAEIASWIVGPS 306 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888877544333 33333 332 3567778888889999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 355 RYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF---------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 355 R~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
|+++++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++..++++++
T Consensus 307 R~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~l 385 (507)
T TIGR00910 307 RGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVL 385 (507)
T ss_pred HHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999888664432 1345566778889999999999999999
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAK 491 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (576)
|+|+|+.+||||. +.++++.++++++++++.++..++.++|+...
T Consensus 386 r~k~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~ 430 (507)
T TIGR00910 386 ILKHPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPANI 430 (507)
T ss_pred HHhcCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCCcc
Confidence 9999999998762 12344545788999999999999999998743
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.2e-45 Score=413.45 Aligned_cols=425 Identities=15% Similarity=0.161 Sum_probs=336.9
Q ss_pred CCccccChHHHHHHH-hhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhc-CcCCCchhHHHHH
Q 039800 51 DMRKTLRWYDLVCFG-IGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVD-MPVAGGAFSYLRV 127 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~-~p~~Gg~y~~~~~ 127 (576)
+-+|++|+++.+.+. +++++|+|+|..++.++.. +|.. .++.|+++++++++++++++|++++ .|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456789999999888 9999999999999999887 7765 7889999999999999999999998 9999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
++|+..|+.+||.+++++.+..+.++.++++|+..+++...... . ..+.+...+++.+++++++++|+.|+|..
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~--~----~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI--M----VDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c----cCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999998875321100 0 00111123678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC------------C----CCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWKDP------------K----NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEE 271 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~~~------------~----~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E 271 (576)
.|+|.+++.++++.++.+++.++.... . |+.+..+.+..++...+...+++|.|+|..++++||
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998777766554210 0 111111223334777777778899999999999999
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-Cc------------------hHHHhhcc---CCCChhH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EA------------------PFSGAFSG---KSDGWKW 329 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~------------------p~~~~~~~---~~~g~~~ 329 (576)
+|||+|++|||++.++++++++|++.++++....+.+.... +. |....+.+ .......
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988777776543221 11 11111100 0001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHH
Q 039800 330 VSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLV 407 (576)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 407 (576)
...++.++++++.+++.++++.+++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56789999999999999999999999999999999999 8999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039800 408 SIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVV 487 (576)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (576)
+..++++|+++++++++.|++++...||
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP---------------------------------------------------- 493 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRP---------------------------------------------------- 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCC----------------------------------------------------
Confidence 9999999999999999888665432222
Q ss_pred cCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 488 PQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.|+. ..+++++++++.|++++...++ ....+.+++++++|+++.+|+
T Consensus 494 -------~fk~-~~~~~sllG~l~c~~lmf~i~w---~~ali~~~i~~~ly~~~~~~~ 540 (953)
T TIGR00930 494 -------RFKY-YHWWLSLLGASLCCAIMFLISW---WAALVAMVIALFLYKYVTYKK 540 (953)
T ss_pred -------cccc-chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccC
Confidence 1111 3457888888888888877654 455556666767776655443
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-42 Score=366.93 Aligned_cols=378 Identities=31% Similarity=0.534 Sum_probs=322.2
Q ss_pred CCCCCccccChHH-HHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYD-LVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566788999999 889999999999999998887665 3 455555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+||+.|+.++|.+++++....+........++...++... .+ ..+......++.++.++.+++|++|+|.
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL-------SIGPLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh-------cCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999998888876422 00 0000113478888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCC--CCC-CCC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPK--NPS-GFF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~--~~~-~~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
..+++.+.+.++++.++++.+.++.+ +.. +.. .+. .....++..++...+|+|.|+|.+++++||+|||+|++|
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 99999999999999999998888777 332 221 111 123446888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
|+++.+.+.++++|++..++.....|.+++... .|+.++.. ..++.+...++.+..+.+.+++.+++..+.+|.+
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAAL--FGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHH--HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887655433 68888887 4444789999999999999999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHH-HHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 039800 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTA-AIALFT----DLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGT 432 (576)
Q Consensus 358 ~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 432 (576)
++|+|||.+|++++|+|+|+++|+++++++.+++. +..... .++.+.++.+...++.|.+..++.+.+|+|+++.
T Consensus 314 ~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 393 (466)
T COG0531 314 YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDL 393 (466)
T ss_pred HHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999998 333322 4689999999999999999999999999987776
Q ss_pred CCCCc
Q 039800 433 TNPQP 437 (576)
Q Consensus 433 ~~~~~ 437 (576)
+|+++
T Consensus 394 ~~~~~ 398 (466)
T COG0531 394 KRPFR 398 (466)
T ss_pred CCccc
Confidence 66654
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=2e-41 Score=363.00 Aligned_cols=404 Identities=16% Similarity=0.275 Sum_probs=289.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhcCcC-CCchhHHHHHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVDMPV-AGGAFSYLRVTF 129 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 129 (576)
++|++++++++.+.++.++|.+.. +..... +|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999996532 333333 788876667777655 67899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFAS-YFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||++|++++|.++.+++............ .....++... ..|+.. +. ........++++++.+++++|++|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GL-NSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--cc-cchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888877665443322211 1112222211 111110 00 0111122455566668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcc--CCCC---CCCCC---CCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILM----GFWK--DPKN---PSGFF---PYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~----~~~~--~~~~---~~~~~---~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++++++.+..++...+++++. .+.. +..+ ..++. +.+ ..+++.++..+.|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 999999887776543222211 1111 1111 11111 111 1357777888999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-------CchHHHhhccCCCC-----------------hh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-------EAPFSGAFSGKSDG-----------------WK 328 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~g-----------------~~ 328 (576)
|||+|++||++..++..+.++|++..+.+....|+++... +.|+. +++ ..| .+
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~g~~~~~~~g~~~~~~~~~g~ 314 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMN--NLGYTLGHALGLSPAASLTLGV 314 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHH--HHHHHHHHHhccchhhhhhhhH
Confidence 9999999999999999999999999888777777665532 12221 111 111 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh---h------c
Q 039800 329 WVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF---T------D 399 (576)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---~------~ 399 (576)
++..++.+..+.+.+++.+++.++.+|.++..+|||.+||+|+|+| |+|+|++|++++.++..++... . .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~ 393 (496)
T PRK15238 315 WFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAF 393 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 5556778888999999999999999999999999999999999999 8999999999998877655433 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHH
Q 039800 400 LTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAV 479 (576)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (576)
|+.+.++.+...++.|++++++++++|| +++.+||++. + .++...+.++++.+++.++
T Consensus 394 f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~-----------------~----~~~~~~~~~~~~~~~~~~~ 451 (496)
T PRK15238 394 FNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV-----------------F----KTKKSTLIATIVVVLVVGF 451 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee-----------------c----CCcceehhHHHHHHHHHHH
Confidence 7889999999999999999999999876 5777777641 1 1221222667777777777
Q ss_pred HHHHHHhcc
Q 039800 480 LQIFHCVVP 488 (576)
Q Consensus 480 ~~~~~~~~~ 488 (576)
..++.+.+|
T Consensus 452 ~~~~~~~~p 460 (496)
T PRK15238 452 ANVFTIIQP 460 (496)
T ss_pred HHHHheeCC
Confidence 777776665
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=9e-43 Score=368.37 Aligned_cols=361 Identities=29% Similarity=0.549 Sum_probs=307.8
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
+++++.+.+.++.++|+|++..+ .. ..+|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998776 33 337888888899998887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++.+|.+++.+....+.....+.+++...++.+.+.+. .....++++++++.+.+|++|.|..+|++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSP----------WPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSH----------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccccccccc----------chheeeeecccccceEeeechhhhhhhhhhhh
Confidence 99999999999999999998899999877653211110 01236788888999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHhhcc-CCCC-------CCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHH
Q 039800 215 TVLHI-LFIAFVILMGFWK-DPKN-------PSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285 (576)
Q Consensus 215 ~~~~l-~~~~~~~i~~~~~-~~~~-------~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~ 285 (576)
+.+++ ..++++++.++.. +.+. ...+.++++.+++.++...+|+|.|+|.+++++||+|| ||+||++..
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~ 225 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeeccc
Confidence 99999 5766766666665 2111 13455667778899999999999999999999999887 899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcCCCCc----hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 286 SVIIVTVLYCLMAASMSMLMPYDMIDAEA----PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 286 ~~~~~~i~y~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
+.+.+.++|++.+++.....|+++.+..+ +....++ ..++++...++.+..+++.+++.++.+.+.+|++++|+
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLAS--AVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHH--HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhc--cccccccccccccccccccccccchhhcchhhcccccc
Confidence 99999999999999999999988765432 4556666 56657899999999999999999999999999999999
Q ss_pred hcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHH-h-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 039800 362 RSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL-F-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTN 434 (576)
Q Consensus 362 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 434 (576)
|||.+|++++|+| |+|+|++++++..+++.++.. + .+++.+.++.+......|.+..++.++.|+|+++.+|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 999999999999999966543 2 2578999999999999999999999999999887655
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=3e-44 Score=384.08 Aligned_cols=359 Identities=27% Similarity=0.483 Sum_probs=304.6
Q ss_pred HHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 62 VCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 62 ~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+++++++++|+|.|...+..+.. +|+ ..++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 45788999999999999998887 777 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 039800 141 LILEYVMSNAAVARGFASYFGTA--IGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLH 218 (576)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (576)
|++.++...+.+....+.+++.+ ++..+..|... .+++.++.++++.+|++|+|...++|.++..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWG-----------ILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccccccccccccccc-----------chhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 99999999999988877777665 32222122110 034677888889999999999999999999999
Q ss_pred HHHHHHHHHHh-hcc----CCCCC---------CCCCCCc--------hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 219 ILFIAFVILMG-FWK----DPKNP---------SGFFPYG--------AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 219 l~~~~~~~i~~-~~~----~~~~~---------~~~~~~g--------~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
++.++.+++.+ +.. ++.+. .+..+.+ +.+++.++..++++|.|+|.++.++||+|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99998888877 322 11111 1123333 78899999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC------chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE------APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAM 350 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (576)
|++|||+..+++.++++|++..++.....|+++.... +|+..+.+ ..+.++...++.+..+.+.+++.++.+
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQ--YSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhh--hcccccccceecccchhhhhhhhhhhh
Confidence 9999999999999999999999999998998875321 48888888 788899999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 351 LGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 351 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.||++++|||||.+|+++.++|+|+|+|++|++++.+++++..+. ..++.+.++.++..+..|.+.+++.++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIR 388 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhh
Confidence 99999999999999999777777779999999999999988776654 235677888889999999999999998
Q ss_pred HhhccCCCCC
Q 039800 425 RRYVNLGTTN 434 (576)
Q Consensus 425 ~r~~~~~~~~ 434 (576)
+|++.+.++|
T Consensus 389 ~r~~~~~~~~ 398 (478)
T PF00324_consen 389 FRKKFKYRGR 398 (478)
T ss_pred hhhhhccccc
Confidence 8877554433
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=5.6e-28 Score=251.24 Aligned_cols=337 Identities=15% Similarity=0.129 Sum_probs=264.2
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLI 142 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 142 (576)
.+.++.++|+|++..|...... +++..++..+++++.+...+++++|+++++|++||.|+|.++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999886654 555566778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 039800 143 LEYVMSNAAVARGFASYFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILF 221 (576)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 221 (576)
+.......++....++++..+++... ..+. .....+++.+++..+++.|.|...|++.+++..++..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPWS------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCcc------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 98888888888877888877664211 1110 1245666777888999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCCCCCCC--CCchhHHHHHHHHHHHHHhhhh-hHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHH
Q 039800 222 IAFVILMGFWK-DPKNPSGFF--PYGAKGVFNGAAMVYLSYIGYD-AVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLM 297 (576)
Q Consensus 222 ~~~~~i~~~~~-~~~~~~~~~--~~g~~~~~~~~~~~~~~f~G~e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~ 297 (576)
++++++.++.+ +.+++.+.. +.++.++..++...+++| |+| ......+|.||++|++||++..+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776 555544332 235667888888888888 565 6888899998779999999999999999999999
Q ss_pred HHHHHhcccCCcCCC-------CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhh
Q 039800 298 AASMSMLMPYDMIDA-------EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWF 370 (576)
Q Consensus 298 ~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 370 (576)
..+..+..|++++.+ .+++.+++++ ..|.++...++.+...+++.++.+++.++.++. +++.+
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~ 299 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQG-VLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLF 299 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHh
Confidence 999999999887631 2466777774 677788899999999999999999988877744 34445
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 371 ARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 371 ~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.|++++ |..+.++..+...++..+.....+..+...+....++...+..+.
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 300 KFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALL 352 (381)
T ss_pred CCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444434 678888888888888777666666666666666665555554443
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=1.5e-22 Score=208.81 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=231.2
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
+++.+|.+.+.++.++|+|++..|+..+.. +|+++|++++++++.+++.++++.|+++++|+. +.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 589999999999999999999999988775 888899999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++.+|.++.......+......+++++..+.++.+.+ .+...+++.+...+..|.|..+|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~---------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPII---------------VIIILIIIVSIYIVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999988888888888888888876554333322 5667777788889999999999999999
Q ss_pred HHHHHHHH-HHHHHHhhcc-CCCCCCCCCCCchhHHHHHHH-HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHH
Q 039800 215 TVLHILFI-AFVILMGFWK-DPKNPSGFFPYGAKGVFNGAA-MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVT 291 (576)
Q Consensus 215 ~~~~l~~~-~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~ 291 (576)
....+... +++....... +.+|..|..++|+.+++.+.. ...++|.|+|......+|+||| |+.||++..+...++
T Consensus 145 ~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~ 223 (359)
T TIGR00912 145 LIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGV 223 (359)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHH
Confidence 98887773 4444333333 677888888899988888887 8899999999999999999996 579999999999999
Q ss_pred HHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChh-HHH---HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 292 VLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWK-WVS---NVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 292 i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
++|.+..++..+..++++.+. ..|..+..+. ...+ ... .++....+.+.+.....+++..++.+
T Consensus 224 ~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~--i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~ 292 (359)
T TIGR00912 224 LLYILTTFVSISVFGGNVTKNLYWPTLELIKL--INIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL 292 (359)
T ss_pred HHHHHHHHHHHheecHHHhhhhcccHHHHHHH--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999898887754 5688888873 3322 333 44444444555555556666666664
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2e-22 Score=207.29 Aligned_cols=365 Identities=17% Similarity=0.202 Sum_probs=269.8
Q ss_pred ccChHHH-HHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhch
Q 039800 55 TLRWYDL-VCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGE 131 (576)
Q Consensus 55 ~l~~~~~-~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 131 (576)
+++...- ..=.+-.+.|.-.|......... +|.. .+...+++++..++++.+++.+++.-- .+||.|.-.+|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 4554333 33344566788788877777665 7765 666677888888899999999999865 689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCccc-ccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGT-AIGVPTAKW-RLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
..|-.+|.++.++.....+.+..+..+.+.. +++...-.. .-........++...+.+.+++++.+++...|+|...+
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888886654 333210000 00001122233445578889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCCCC---------------C----------------------------------
Q 039800 210 VNMILTVLHILFIAFVILMGFWK--DPKNP---------------S---------------------------------- 238 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~--~~~~~---------------~---------------------------------- 238 (576)
+..++..+.++.++.+.+.++-. ++..+ .
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y 351 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEY 351 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccc
Confidence 99999999888887776665543 21110 0
Q ss_pred ----------CC------------C----------CCc-------------------hhHHHHHHHHHHHHHhhhhhHhh
Q 039800 239 ----------GF------------F----------PYG-------------------AKGVFNGAAMVYLSYIGYDAVST 267 (576)
Q Consensus 239 ----------~~------------~----------~~g-------------------~~~~~~~~~~~~~~f~G~e~~~~ 267 (576)
++ + +.| -..|..-+..-+-+.+|+=+.++
T Consensus 352 ~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSN 431 (1075)
T KOG2082|consen 352 FSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSN 431 (1075)
T ss_pred cccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCC
Confidence 00 0 000 01122222233456688889999
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC--chHH--HhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE--APFS--GAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~--~p~~--~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
.+++.|||+|.+|.+.+.+.+....+|+...+.+.++.....+.+. ..+. .+.. .+. ....+++.++.+++.+
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva--~la-WPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVA--TLA-WPSPWVIVIGSFLSTC 508 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEE--Eec-CCCceeeehhHHHHHh
Confidence 9999999999999999999999999999999888877663332110 0000 0111 111 1235678889999999
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 039800 344 TSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANA 421 (576)
Q Consensus 344 ~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 421 (576)
++.+..+.++.|+|.+.|||+.+| +.|+|.+ ++|-|.+|++++.+++-...++++.+.+..+.++.++++|.+++++
T Consensus 509 GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 509 GAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred HHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999 8899998 8999999999999999988889999999999999999999999887
Q ss_pred HHH
Q 039800 422 VIY 424 (576)
Q Consensus 422 ~~~ 424 (576)
+.+
T Consensus 588 Cav 590 (1075)
T KOG2082|consen 588 CAV 590 (1075)
T ss_pred HHH
Confidence 654
No 40
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-21 Score=200.34 Aligned_cols=374 Identities=18% Similarity=0.201 Sum_probs=285.2
Q ss_pred ccChHHHHHHHhh-hhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhch
Q 039800 55 TLRWYDLVCFGIG-GMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGE 131 (576)
Q Consensus 55 ~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 131 (576)
+++.++-++.-.. +|...-.|...+.++.. +|-. .+.-.+++-.+.+++.++.+.+++.-- +.||.|.-++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7887766554443 34555677778887776 7765 666677777888888999999999877 778999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..|--.|..++++.+..++.+..++.+-+.+-++.....-. ....+|.++-+..+.+..+..++..+++.|...++|..
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~s-g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGAS-GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCc-ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 99999999999999999999999999988888875331100 01124555555557777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-CCCC------------------CCCC-----------------CCchhHHHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWKD-PKNP------------------SGFF-----------------PYGAKGVFNGAAMV 255 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~~-~~~~------------------~~~~-----------------~~g~~~~~~~~~~~ 255 (576)
+++.....+.+....+..+..+ .++. +++. ..+...+-..+.+.
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 8888776666655555444331 1110 1110 01112244444455
Q ss_pred HHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHH
Q 039800 256 YLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 256 ~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~ 335 (576)
+-.-+|.-+.+.|++|.|+|.|.+||+.+.++....+.|++..+.+....|...+.++..+.+... ....++.
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~is-------l~p~fi~ 376 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHIS-------LHPPFIL 376 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeecc-------ccchHHH
Confidence 556688889999999999999999999999999999999999999998888776665543322221 2235666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLF 413 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (576)
++.+.+.+.+..+.+.++||++.++|||..+| -.++|.....+.|+.|+.++..+.-++.+.+++|.+..+.++.+++
T Consensus 377 iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLl 456 (945)
T KOG1288|consen 377 IGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLL 456 (945)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777788888899999999999999999999 6788888788999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCC-Cc
Q 039800 414 VFYMVANAVIYRRYVNLGTTNP-QP 437 (576)
Q Consensus 414 ~~~~~~~~~~~~r~~~~~~~~~-~~ 437 (576)
+|..++++++.++....-.-|| +|
T Consensus 457 ty~~vNLacl~LeissAPNFRPtFk 481 (945)
T KOG1288|consen 457 TYGAVNLACLLLEISSAPNFRPTFK 481 (945)
T ss_pred HHHHHHHHHHHhhhccCCCCCchhh
Confidence 9999999999887755333343 55
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.87 E-value=1.1e-18 Score=176.89 Aligned_cols=342 Identities=14% Similarity=0.136 Sum_probs=252.3
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+.++.-+|+|.+..|+..-.. +|.. +.++|+++++...+.+++ +.|++||.|++.++.+||..|++.+|.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~ 75 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVI 75 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHH
Confidence 345556899999999888777 5532 677899999998888877 889999999999999999999999996
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 141 LILEYVMS-----NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 141 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
.++..-.. .+..+...+ +..+++...... ...+..+++..++.++++++.|...+++++++
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~------------~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLL------------ALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH--HHhccCcccchH------------HHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 66443222 222222211 333333211000 12256667777778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCC-CCCCCCch-hHHHHHHHHHHHHHh-------hhhhHhhhhh-hhcCcCCchhhHHHH
Q 039800 216 VLHILFIAFVILMGFWKDPKNP-SGFFPYGA-KGVFNGAAMVYLSYI-------GYDAVSTMAE-EVKNPVKDIPIGVSG 285 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~~~~~~-~~~~~~g~-~~~~~~~~~~~~~f~-------G~e~~~~~~~-E~k~p~r~~p~ai~~ 285 (576)
..+++.++.+++.++.+..... .+..+..- ..+..++....++|+ |+-.+..+.+ |.|||+|+.|+.+..
T Consensus 142 P~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999998711111 11111111 457778888888888 9988888888 999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHhcccCCcCC----CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039800 286 SV-IIVTVLYCLMAASMSMLMPYDMID----AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVI 360 (576)
Q Consensus 286 ~~-~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 360 (576)
++ ..+...|+...++..+..+.+... ......++.++ .+| +.+..++.+.+.++++++.++.+.+.++.
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~-~~G-~~G~~ll~i~v~lACLtT~iGli~~~a~~---- 295 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQH-LFG-SLGSFLLGLIITLACLTTAVGLTTACSEY---- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHH-Hcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 98 666667777888888777755443 23355566664 666 88899999999999999999988885544
Q ss_pred hhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCCCCCCch
Q 039800 361 GRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY--RRYVNLGTTNPQPT 438 (576)
Q Consensus 361 a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 438 (576)
|+|.+|| +|+.+.++...+...+.....++.+.++..-...+.|-+.....+. .|++.|+.+|+||.
T Consensus 296 ---------f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 296 ---------FHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred ---------HHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 7777754 9999998888777777766789999998888888888665555444 78888888899986
Q ss_pred hHHHH
Q 039800 439 LSFLF 443 (576)
Q Consensus 439 ~~~~~ 443 (576)
.....
T Consensus 365 ~~~~~ 369 (378)
T TIGR00796 365 TLIVA 369 (378)
T ss_pred HHHHH
Confidence 54433
No 42
>PHA02764 hypothetical protein; Provisional
Probab=99.85 E-value=3.7e-19 Score=167.32 Aligned_cols=278 Identities=19% Similarity=0.283 Sum_probs=180.8
Q ss_pred cCCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 47 KSGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 47 ~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
|+.++|-|+.+.+|.+...++.+- |.++ ..+........|...+++|+++++++++.+++|+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 478999999999999999998773 3322 11211111224556889999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcch
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
+|++||.+|++.||..|+.+..+.+..+-... + + +..+ +.... . .+-. -......+...|.|
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~-~-~~i~-~~~~~-----------f-~~~~-s~~~i~~~i~~~~~ 145 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--L-N-FNIQ-NQFEQ-----------F-LIVE-SLFPIVLLIIANKK 145 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheee--e-e-eeeH-HHHHH-----------H-HHHH-HHHHHHHHHHcccH
Confidence 99999999999999999998888776542111 0 0 0000 00000 0 1111 11222333445678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHH
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWKDPKNP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGV 283 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai 283 (576)
...|...++.....+ ..+.... ..-|+ +.|.-+ .....+...-.-.|.=.|+....++|.||-+|....+-
T Consensus 146 ~~~~~v~il~~a~~i---~aif~~~--~s~n~~~~~f~~s--nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gy 218 (399)
T PHA02764 146 IYAKIVDILAIAQII---IAIFIAF--KSFNFQYQNFTIS--NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGY 218 (399)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhc--cceeEEEcceeeh--HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhh
Confidence 888887775544433 1111111 11111 111111 22455566666777778999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
..+...+.++-+..+ +. . -.++.+.+....++-+....--.||+.++|+.|
T Consensus 219 f~s~~~~~~~~ii~s---------------------y~--n------~~il~~~~~~w~~~y~~~~~~~~srli~~~~fd 269 (399)
T PHA02764 219 FVSYGIVAILSIIDS---------------------YS--N------LNILFALMPIWFFSYMPIANKIQSRLIQTMSFD 269 (399)
T ss_pred HHHHHHHHHHHHHHh---------------------hh--h------HHHHHHHHHHHHHhheeeecchHHHHHHHHHhh
Confidence 777666655544433 11 0 011222244445555555566789999999999
Q ss_pred CCCchhhhhhcCCCCCch
Q 039800 364 SVVPAWFARVHPKTSTPV 381 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~ 381 (576)
+.+|+.|+|.|| ++|.
T Consensus 270 ~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 270 KVLPEKFSKINP--NVLL 285 (399)
T ss_pred hhchHHHhccCC--Ccee
Confidence 999999999994 6887
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=2e-16 Score=163.17 Aligned_cols=290 Identities=17% Similarity=0.186 Sum_probs=237.8
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFA 133 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~ 133 (576)
+-+.+....+.+|..+|+|++..|-.... +|- ...+..++++.++...++.++|...+.|+..+.-+-+++.+||.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 45678888999999999999998876533 454 367778889999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 039800 134 AFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTA-KWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM 212 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (576)
+++.+..|++.......++....++.+.+.++.... ++. .......+..++..+.+.|.|...|+++
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~------------~~~~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS------------PWLSSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999988888888888888888888887754321 110 1145566677777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-CCCCCCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 213 ILTVLHILFIAFVILMGFWK-DPKNPSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 213 ~~~~~~l~~~~~~~i~~~~~-~~~~~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
.+...+++.++.+.+.++.+ +.++.... .+..+...+.+++..+++|.-...+..+.+..++-+|+.+|++..+..+
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999998888888887 66665432 2356788889999999999999999999999987678899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCC----CC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 290 VTVLYCLMAASMSMLMPYDMID----AE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
..++|++..+++.+..|.++.. ++ +++....++ ..++++...+..+...++..++..+...+..+.+..
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALAN-VSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887642 22 355566665 677788999999999999999998888887776643
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.81 E-value=5.6e-17 Score=166.90 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=219.1
Q ss_pred HHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----h--hhcCcCCCchhHHHHHHhchhH
Q 039800 60 DLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTE----F--AVDMPVAGGAFSYLRVTFGEFA 133 (576)
Q Consensus 60 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~e----l--~~~~p~~Gg~y~~~~~~~g~~~ 133 (576)
..+...+|.++|+|++..|.. +|...+++++++++++++.++.++. . .+..| ..+.++++++.+||..
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-CEDITEVVEEHFGKNW 80 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHcCHHH
Confidence 345677788899999999875 3444577778777777776665555 4 44444 5689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 134 AFLTGSNLILEYVMSNAAVARGFASYFGTAIG----VPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|.+.++.|++........+.....+.+.+++. .+.+. ..+....+++....++..|.|...|
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~--------------~~i~~lilv~il~~iv~~G~~~i~r 146 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPL--------------RGLLSLALILILVAIMSFGEKLLFK 146 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 99999999999998877777666666555442 22111 1245666677778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhh----hhhcCc---CCch
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNPSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMA----EEVKNP---VKDI 279 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~----~E~k~p---~r~~ 279 (576)
++.++...+++.++.+.+....+ |.++.... ....+..++.+++..+|+|.|+|..+.++ +|.+|| +|+.
T Consensus 147 ~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 147 IMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 99999999988888888777776 66665322 22346779999999999999999999998 666655 5778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC----CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 280 PIGVSGSVIIVTVLYCLMAASMSMLMPYDMID----AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 280 p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
.|++..+..+..++|+...+++.+..++++.. ++.+....+.+ ....++...+..+...++..++..+..++...
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~-~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLAN-HFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999999999999999999999998888752 33344555554 66778888888888888999999999998888
Q ss_pred HHHHHhhc
Q 039800 356 YMCVIGRS 363 (576)
Q Consensus 356 ~l~a~a~d 363 (576)
.+..+-++
T Consensus 306 ~l~~l~~~ 313 (397)
T TIGR00814 306 GLNGIVLN 313 (397)
T ss_pred HHHHHHHH
Confidence 88887744
No 45
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6e-18 Score=172.34 Aligned_cols=367 Identities=16% Similarity=0.223 Sum_probs=285.8
Q ss_pred ccccChHHHHHHHh-hhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHh
Q 039800 53 RKTLRWYDLVCFGI-GGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTF 129 (576)
Q Consensus 53 ~r~l~~~~~~~~~~-~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~ 129 (576)
+-++|+|+-++.-. -++-|.-.|...+...++ +|.. .++...++..+...++++..-++++-. +.||.|..+++.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 34699998876655 355688889888888777 7765 666677888899999999999999987 8899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|+..|--.|..|.++....++.+..++++.+..++.... .+. +..++.+...+...+|..|+++..|
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-~~~------------i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-KEM------------IDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-HHH------------hcchhHHHHHHHHHhhhccchhHHH
Confidence 999999999999999999999999999999999887542 222 1247777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-C-CC-CC---------CCCCCC--chhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-D-PK-NP---------SGFFPY--GAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~-~~-~~---------~~~~~~--g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
.|.++..+.++.+.-..+..+.. . .+ .+ ++++|. .-..++..+...+-+.+|.=+.++++++.|+|
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 99999988888877666665554 1 00 00 111211 01245666666778889999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-----CCc----hHHHhhccCCCC-hhHHHHHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-----AEA----PFSGAFSGKSDG-WKWVSNVIGVGASFGILTS 345 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-----~~~----p~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 345 (576)
++++|++-..+......+|..+..-.....-.+... .+. .+.+-++ ... .......+..+...+.+.+
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~q--v~smvS~~~Pl~~AGi~~a~LSs 330 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQ--VMSMVSTFGPLITAGILAAELSS 330 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHH--HHHhHhhcccchhhHHHHHHHHH
Confidence 999999999999999999987776544433222211 011 1222222 111 1223445667777788888
Q ss_pred HHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 346 LLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 346 ~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
..+.+.++.++++++++|...| .+++|-.++++.|.++...+...+..+..++..+.+..+.+...+.+|.....+++
T Consensus 331 alsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f 410 (643)
T KOG2083|consen 331 ALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCF 410 (643)
T ss_pred HHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhh
Confidence 8899999999999999999999 67899999999999999999999988888899999999999999999999999988
Q ss_pred HHhhccCCCCCC
Q 039800 424 YRRYVNLGTTNP 435 (576)
Q Consensus 424 ~~r~~~~~~~~~ 435 (576)
.-+...++..||
T Consensus 411 ~aSl~~s~~wRp 422 (643)
T KOG2083|consen 411 HASLAISEGWRP 422 (643)
T ss_pred hhhhccccccCc
Confidence 777776665554
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.76 E-value=1.5e-14 Score=147.83 Aligned_cols=323 Identities=14% Similarity=0.089 Sum_probs=238.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
.|++.+.+....+..|..||.|.+..|-.... .|- .+....+++++.+...++.+.|...++|+.-+...-+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 45678999999999999999999988765533 453 367778889999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|.+..+.+..+.+-......++....++.+++.++... +. .+ ...-.+++..++..+.+.|.|...|+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~--~~-----i~-----~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS--LN-----VP-----ARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC--CC-----Cc-----HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99887777766665556666667777777777664310 00 00 12567778888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCCCCCCC---CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 211 NMILTVLHILFIAFVILMGFWK-DPKNPSGF---FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~---~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
++++...+++.++..+...+.+ +.++.... .+..+...+.+++..+++|.=...++.+.+..++-.|+++|++..+
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 9999999999987777766665 44333211 1122445778899999999888999999888876556899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC----C--C-chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID----A--E-APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~----~--~-~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
..+..++|++...++.+..|.++.. . + +.+.+.+++ ..++++...+..+...++..+|..+...+....+..
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~-~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSG-VLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977641 1 2 223455554 667778888888888888888888777776666655
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhc
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTD 399 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~ 399 (576)
+-+-+ + +.+-.....+++.+...++.+...
T Consensus 312 ~~k~~---------~-~~~~r~~~~~ltflPPl~~al~~P 341 (414)
T PRK10483 312 LFGFD---------D-SAMGRFKTALLTFLPPVVGGLLFP 341 (414)
T ss_pred HhCCC---------C-ccccceeeehhhHhhHHHHHHHhH
Confidence 43221 1 111112234456666666666643
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.74 E-value=2.8e-14 Score=146.60 Aligned_cols=343 Identities=15% Similarity=0.154 Sum_probs=247.3
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+.....++..|..+|.|++..|-.... +|.. .....++++.++...++.+.|...+.|...+..+-+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 566778889999999999988876533 4543 5666777888888899999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGV----PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
+....|++.......++....++.+.+.++. +.+. ....+.+..+...+.+.|.|...|++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~---------------~~~~l~F~~~~~~iv~~g~~~v~~~n 146 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSP---------------TAGVLLFTLVAGGVVCVGTSSVDLFN 146 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCCh---------------HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999888888888888866666655432 1111 13455666666668888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIV 290 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~ 290 (576)
+++...+++.++.+......+ +.++.... +.+..-.+.+++..+++|.=...++.+....++-+|+.+|++..+..+.
T Consensus 147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 999999998887777766666 55554321 1112237888999999999999999999998877789999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcCC----CCc---hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 291 TVLYCLMAASMSMLMPYDMID----AEA---PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 291 ~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
.++|++...++.+..|.++.. ++. +..+.+++ ..+.++...+..+...++..+|..+...+..+.+..+-+.
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALRE-VVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHH-HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999987642 222 45566664 6777899999999999999999888888887777665433
Q ss_pred CCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhh--cHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 039800 364 SVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT--DLTVLLNLVSIG-TLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~~-~~~~~~~~~~~~~~~r~~ 428 (576)
+. + +.+ ......++.+...+++... .|....+.+... ..+..+++.....+.|++
T Consensus 305 ~~--------~-~~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 305 RN--------T-VGG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred Cc--------c-ccC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 1 111 1223445555555555552 344444444432 222334444444444443
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.74 E-value=3.2e-14 Score=145.29 Aligned_cols=323 Identities=12% Similarity=0.097 Sum_probs=229.5
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+......+..|..||+|.+..|-.... .|- ......+++++.+...++.+.|...++|..-+...-+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 566688899999999999988765533 453 36777888999999999999999999998888999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
+.+..+.+-......++....++.+++.++... .... + ....++.+.+++..+.+.|.|...|.++++.
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i-----~-----~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~ 156 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL-GYHA-----N-----PRIVGICTAIFVASVLWISSLAASRITSLFL 156 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCC-----c-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 777766655555666667777777777664310 0000 0 1145678888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCCCCCC-CC---c-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 216 VLHILFIAFVILMGFWK-DPKNPSGFF-PY---G-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~-~~~~~~~~~-~~---g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
..+++.++..+.....+ +.++..... .. . +..++.+++..+++|.=...++.+....++-.|+.+|+++.+..+
T Consensus 157 ~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 157 GLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 99998887777776666 554443211 11 1 334777888889999888888888888876667899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCC----CC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 039800 290 VTVLYCLMAASMSMLMPYDMID----AE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGR 362 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 362 (576)
..++|++...++.+..|+++.. ++ +.+.....+ ...+++...+..+...++..+|..+...+....+..+-+
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~-~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~ 315 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG-TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK 315 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHh-hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988877642 21 122333332 455578888888888888888877766665555544322
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHH
Q 039800 363 SSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVL 403 (576)
Q Consensus 363 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l 403 (576)
. .+ +.+-......++.+.-.++.++.....+
T Consensus 316 ~---------~~-~~~~r~~~~~ltflPPl~~al~~P~gFl 346 (415)
T PRK09664 316 I---------DN-SHGGRFKTVLLTFLPPALLYLIFPNGFI 346 (415)
T ss_pred C---------CC-ccccceeeehhhHhhhHHHHHHhhHHHH
Confidence 1 11 1111222344566666666666443333
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.70 E-value=2.9e-14 Score=144.50 Aligned_cols=284 Identities=16% Similarity=0.219 Sum_probs=235.8
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
|+|.+|...+.+..++|++....|+..... +| ++|++.+++++..+..++.+..+.+++|+. ...++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 478999999999999999999999988877 56 889999999999999999999999999986 499999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
...+..+.+.+....+.....+++.++..+-++.+.| .+...++..+.+....|.+...|...+.
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~---------------~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETPIW---------------VIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHH---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999998776655544 5667777888899999999999988888
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHH
Q 039800 215 TVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVL 293 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~ 293 (576)
....++.++.+....... |+++..|..+.|+..++.+.....+.|.|.|....+...+||++ +..|....+...++++
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~ 221 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLF 221 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHH
Confidence 888877776666665555 88889999999999999999999999999999999999999975 5789999999999999
Q ss_pred HHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChh-H---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 294 YCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWK-W---VSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 294 y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
+.+..+......+++..+. .-|..+..+ ....+ . ...++...-+.+.+.....++++.++.+-.
T Consensus 222 ~~~~~~~~i~vfG~~~~~~~~~P~~~~~~--~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 222 LLFIIFITIGVFGPELAKKLTYPVLELAR--SIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHhcCHHHHhceecHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888766543 567777777 33322 3 334444445555555666666777766543
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.69 E-value=1.7e-13 Score=140.00 Aligned_cols=282 Identities=15% Similarity=0.098 Sum_probs=217.1
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcC-cCCCchhHHHHHHhchhHHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDM-PVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
...+|..+|+|+++.|-.... +|.. ..+..++++.++...+..+.|..... |...+.-+-+++.+|+.+|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 666788899999998876532 4544 66677888888999999999999998 5555788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CC-CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 141 LILEYVMSNAAVARGFASYFGTAI----GV-PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
|++........+.....+.+.+.+ +. +.+ ..+.+.+++.+...+...|.|...|++.++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~---------------r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv 168 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGFAPLN---------------RGFVALFLLLLMAFVIWFGKDLMVKVMSYLV 168 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCcc---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 998888777777766666665542 21 111 1267788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCCCCCC----CC----c-hhHHHHHHHHHHHHHhhhhhHhhhhhh----hc------Cc
Q 039800 216 VLHILFIAFVILMGFWK-DPKNPSGFF----PY----G-AKGVFNGAAMVYLSYIGYDAVSTMAEE----VK------NP 275 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~-~~~~~~~~~----~~----g-~~~~~~~~~~~~~~f~G~e~~~~~~~E----~k------~p 275 (576)
..+++.++.+.+..+.+ +.+++.... +. + ....+.+++..+++|.=...++.++.. .+ +.
T Consensus 169 ~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 169 WPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 99999999988888887 555543211 11 1 124778889999999877777776655 32 22
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcC----CCCch-HHHhhccCCCCh---------hHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMI----DAEAP-FSGAFSGKSDGW---------KWVSNVIGVGASFG 341 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~----~~~~p-~~~~~~~~~~g~---------~~~~~~~~~~~~~~ 341 (576)
+|+..|++..+.++..++|++..+.+.+..|++++ +++.+ +..... ..++ ++...+..+...++
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~--~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLAN--HFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHH--HhhhcccccccchhHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998885 34555 333333 4443 67888888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHhhc
Q 039800 342 ILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 342 ~~~~~~~~~~~~sR~l~a~a~d 363 (576)
..++..+..++..-.+-.+.++
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888754
No 51
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.64 E-value=1.9e-12 Score=134.78 Aligned_cols=285 Identities=16% Similarity=0.121 Sum_probs=220.9
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhHHHHHH
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFSYLRVT 128 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~~~~~~ 128 (576)
..+++-+..+.+...++..+|+|++..|-.. ..+|-. .+...++++.++....+.+.|...+.|+.. +.++-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 3456678889999999999999999887654 225544 666788899999999999999999999884 899999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.++++.+..+.+.....+.++....++.+...++....... ....+..+++...+..+.+.+.+...
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----------~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----------LPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----------cchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999988888888888888888877653111100 00125566666777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC--CC-CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCc-hhhHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSG--FF-PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKD-IPIGV 283 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~--~~-~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~-~p~ai 283 (576)
|.+..+...+++.++++......+ +.++... .. +..+..++.+++..+++|.+......+..|+|+++++ ++|++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999999999999998888877776 4443322 12 3557789999999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcC-------CCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMI-------DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
..+..+..++|+...+......+.+.. +++.....+..+ ....+.......+....+..++..+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~-~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAG-VINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888886632 223344555443 4444556666666666666555433
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.41 E-value=4.8e-10 Score=114.31 Aligned_cols=292 Identities=18% Similarity=0.263 Sum_probs=195.2
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------CCCchh
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMP-------VAGGAF 122 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p-------~~Gg~y 122 (576)
++-+++++.++.++.+++..+|.|-.......+.. +||++++...+.+++.+.+.++=.-|+.++. ..||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 33455799999999999999999999988888876 9998544445555666555555444555443 347899
Q ss_pred HHHHHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 123 SYLRVTFGE-FAAFLTGSNLILEYVMS-NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 123 ~~~~~~~g~-~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
.|.++.+|. +++.+.+.....++... ......+.++.++..++.++ ...++++.+++.++.
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~-----------------~~~gi~l~~l~~~vi 154 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIPP-----------------WITGIILAILVALVI 154 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccccH-----------------HHHHHHHHHHHHHHH
Confidence 999999995 45555555544444333 45555555555555444321 256777778888888
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCCch-hHHHH---------HHHHHHHHH--
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPYGA-KGVFN---------GAAMVYLSY-- 259 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~g~-~~~~~---------~~~~~~~~f-- 259 (576)
.-|+|...++...+..+..+..++..+..+..+.++. ..|.+... .|+.- ++.=.+|+-
T Consensus 155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEA 234 (416)
T PF01235_consen 155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEA 234 (416)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCC
Confidence 9999999999999998888777666555555443332 22333321 11111 111123433
Q ss_pred -hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcC---CCCchHHHhhccCCCChhHHHHHHH
Q 039800 260 -IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMI---DAEAPFSGAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 260 -~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~ 335 (576)
.|....+|.+.|+++|.|+--.+++-..+-+.++..+..+++.....+... +...-...++++ ..| ++...++.
T Consensus 235 G~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~-~~g-~~g~~~v~ 312 (416)
T PF01235_consen 235 GLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFST-VLG-SWGPYFVA 312 (416)
T ss_pred CCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHH-hhh-hhHHHHHH
Confidence 466777788889999998877777777776777777777776664433222 112224556774 566 78899999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
++.++..++++.++.+..-|.+.-+-
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988887765544
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.36 E-value=2.8e-09 Score=109.39 Aligned_cols=285 Identities=16% Similarity=0.216 Sum_probs=179.3
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHHHHHHHHHHHHHHHHHHhhhcCc---C----CCchhHHH
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSAFCYTEFAVDMP---V----AGGAFSYL 125 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~li~~l~~~~~a~~~~el~~~~p---~----~Gg~y~~~ 125 (576)
++++.++.++++.+..+|.|-....+..+.. +||++ +|.|+ ++++.....+.-.-++.++- + .||...|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI-~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWV-TAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHH-HHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 4599999999999999999866566666655 89985 44444 44444444444333443333 2 24555888
Q ss_pred HHHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc
Q 039800 126 RVTFG-EFAAFLTGSNLILEY-VMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS 203 (576)
Q Consensus 126 ~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (576)
++.++ |++|.+.+.. .+.+ ...+.....+.++.++..++. +. ++.++++.++..++..-|
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~--~~---------------~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNV--PK---------------LVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCC--cH---------------HHHHHHHHHHHHHHHhcC
Confidence 88776 7778877766 4444 445666677777777644422 22 256777777777777779
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCCchhHHHH----------HHHHHHHHH---hh
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPYGAKGVFN----------GAAMVYLSY---IG 261 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~g~~~~~~----------~~~~~~~~f---~G 261 (576)
+|...++...+..+..+..+...+.....+.++. ..|.+....|-.. ++.=.+|+- .|
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~G 264 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMG 264 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccC
Confidence 9999999999998887776544443333233332 1233322111111 122233444 46
Q ss_pred hhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--CCCCchH-HHhhccCCCChhHHHHHHHHHH
Q 039800 262 YDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--IDAEAPF-SGAFSGKSDGWKWVSNVIGVGA 338 (576)
Q Consensus 262 ~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~~~~~p~-~~~~~~~~~g~~~~~~~~~~~~ 338 (576)
....+|.+.|+++|.|+--.++.-..+-+.++..+..+++.....+++ -.++..+ .++++. ..| +++..++.++.
T Consensus 265 sa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~-~~g-~~g~~~v~i~~ 342 (425)
T TIGR00835 265 SAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSY-GLG-SFGAVFVAVAL 342 (425)
T ss_pred cHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHH-Hhh-hhHHHHHHHHH
Confidence 667777888899998876666666666566667677766555443331 1112233 345663 454 67889999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 039800 339 SFGILTSLLVAMLGQARYMCVI 360 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~sR~l~a~ 360 (576)
++..++++.++.+..-+.+.-+
T Consensus 343 ~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 343 FLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988877776554
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.29 E-value=2.6e-08 Score=100.53 Aligned_cols=290 Identities=19% Similarity=0.269 Sum_probs=203.1
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-------CCCchh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-------VAGGAF 122 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-------~~Gg~y 122 (576)
+-+++++.++.++.+.++.+|+|-.......+.. +||+ ..|.|+ .+++.+.+.+.=+-|+..+. ..||+-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi-~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWI-VALFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHH-HHHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 3456799999999999999999999988888876 9998 455554 45555555555555666554 347999
Q ss_pred HHHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 123 SYLRVTFG-EFAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 123 ~~~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
+|.++.+| |.+|.+.+.....++- ..+.....+.++.+++.++.+. ...++++.++..++.
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~-----------------~~~gi~la~l~~~VI 198 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIPP-----------------LVTGIVLALLVALVI 198 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcH-----------------HHHHHHHHHHHHHHH
Confidence 99999999 6778888877777776 5888888888898888776542 267888888888899
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCC----chh------HHHHHHHHHHHHH--
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPY----GAK------GVFNGAAMVYLSY-- 259 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~----g~~------~~~~~~~~~~~~f-- 259 (576)
.-|+|..+++........-+.-++..+..+..+.++. ..|.+. |.. .+..++.=.+|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEA 278 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEA 278 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999998888776666554444444322221 122222 121 1222232334554
Q ss_pred -hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC--CCchHH-HhhccCCCChhHHHHHHH
Q 039800 260 -IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID--AEAPFS-GAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 260 -~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~-~~~~~~~~g~~~~~~~~~ 335 (576)
.|....++.+.++++|.|+--..+....+-+.++.....+.+.....++..+ +...+. .+++. .+| +++..++.
T Consensus 279 GmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~-~~g-~~G~~fv~ 356 (452)
T COG1115 279 GMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSS-HLG-SWGSYFVA 356 (452)
T ss_pred cCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHH-hcC-ccHHHHHH
Confidence 3556667778888999887666666555556677777777766655444333 333443 45664 566 68999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
+.+++-.+++..++.+..-|.+.-+.
T Consensus 357 i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 357 IALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877765544
No 55
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.17 E-value=2.7e-08 Score=101.47 Aligned_cols=351 Identities=12% Similarity=0.131 Sum_probs=198.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH--HHHHHHHHHHHHHH---HHHHHHHhhhcCcCCC--------
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA--IVISYAIAGLCALL---SAFCYTEFAVDMPVAG-------- 119 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~li~~l~~~~---~a~~~~el~~~~p~~G-------- 119 (576)
++..+..+.+.--+-.++|+|++..|... .. +|.. .+...+++.+...+ ..-+--++.++.-++-
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34488888888888899999998776544 44 6653 23333444443333 3444556666642211
Q ss_pred ----chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcccccccCCCCCCCchhhHHHHHHHH
Q 039800 120 ----GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP-TAKWRLKVDGLPDGFNEIDVLAVAVVL 194 (576)
Q Consensus 120 ----g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (576)
+.+.| .|.+||...+++-....+.+...+..+....++-+.++.+.. ...+.. .+...+.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~------------~~~i~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSV------------RLYILIQLP 188 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccH------------HHHHHHHHH
Confidence 12225 678899999999999999999999999999999998888731 122211 122222222
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--C---CCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhh
Q 039800 195 VITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--D---PKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMA 269 (576)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~---~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~ 269 (576)
....+| -+|..+++.-+.....+..++.+.+..... + .++...+. ++.++...+..++|+|-|...+-.+=
T Consensus 189 ~~lll~--~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~--~~~~~~lf~GtaifafEGig~VLPlE 264 (449)
T KOG1304|consen 189 PLLLLN--LIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVLPLE 264 (449)
T ss_pred HHHHHH--HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc--chhhhHHHHHHHHHHhccceEEEehh
Confidence 222333 234444444444444444433333332222 2 22222222 36778888889999999999999999
Q ss_pred hhhcCcCCchh---hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 039800 270 EEVKNPVKDIP---IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSL 346 (576)
Q Consensus 270 ~E~k~p~r~~p---~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (576)
+++|+|+ +.| +.+-.++.++.++|+..-+.-....+.|..++-. - .+...++...+-+...++.+-+.
T Consensus 265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------L--NLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------L--NLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------e--cCCccHHHHHHHHHHHHHHHHcC
Confidence 9999996 678 9999999999999998887755555544332211 1 23334555555566666666555
Q ss_pred HHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHH-hhcHHHHHHHHHHH--HHHHHHHHHHHHH
Q 039800 347 LVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL-FTDLTVLLNLVSIG--TLFVFYMVANAVI 423 (576)
Q Consensus 347 ~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 423 (576)
--.++-.-++++.- +.++++ .++++=.++.-=.+..+++..++. +.+++.++++.... ..+.++++.+--+
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~-~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFS-ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcC-cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 55566666766653 222222 110000111111222222222222 35677777776543 3445555555555
Q ss_pred HHhhccCCCCCCCc
Q 039800 424 YRRYVNLGTTNPQP 437 (576)
Q Consensus 424 ~~r~~~~~~~~~~~ 437 (576)
...+...+.+..|+
T Consensus 410 ~~~~~~~~~~~~~~ 423 (449)
T KOG1304|consen 410 ITFYPEGKGRFMWK 423 (449)
T ss_pred HHhcccccCceehH
Confidence 55544443333343
No 56
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.16 E-value=3.5e-08 Score=102.22 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=187.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHHHHHHHHHHHHHHHHHHhhhcCcCCCc-----hhHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSAFCYTEFAVDMPVAGG-----AFSYL 125 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~li~~l~~~~~a~~~~el~~~~p~~Gg-----~y~~~ 125 (576)
.+|+-++++..+-.++.++|.|+...| ..... .|... +...++.+++.+.++..+.+.-...|.-.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLP-YALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhH-HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 456799999999999999999999877 44444 67653 677788889999999889999888887777 77778
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCch-hhHHHHHHHHHHHHHHHhcc
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE-IDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 204 (576)
+++||+..-.++++...+.....+..+....++.+..+++....+-. ..+ .+. ..+.+.+...... +...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~----~l~--~~~f~iif~~i~~~~s~---lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN----SLD--KQYFIIIFGLIVLPLSQ---LPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ccc--ceehhhhHHHHHHHHHH---CCCc
Confidence 89999877667888777777777788888888888877654211110 000 000 1122222222222 3333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCCC-CCCCCCchhHH-HHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWKD--PKNP-SGFFPYGAKGV-FNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~-~~~~~~g~~~~-~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
...+..........+......+..+..++ ..+. .+....+..+. +.++....|+|.|.......-..+|+|++ +.
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~ 261 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FK 261 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hh
Confidence 44444445555555555555566666652 1111 12222222222 77888889999999999999999999987 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSD-GWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|+.+.+...++.+|+...+.-....+.+..++ ... .+ .+.|.....++.+.+..+++..-+..
T Consensus 262 ~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~------il~--s~~~p~~~~~~ani~i~~h~i~s~~i~a~ 325 (437)
T KOG1303|consen 262 KALLISYIIVTFLYFPVAIIGYWAFGDSVPDN------ILL--SLQPPTWLIALANILIVLHLIGSYQIYAQ 325 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccchh------hhh--cccCchhHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999999999999998887666555432211 222 33 35677788888888887776544333
No 57
>PTZ00206 amino acid transporter; Provisional
Probab=99.15 E-value=1.8e-07 Score=99.51 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=145.0
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
|..+..+-.+..++|+|++..|... .. +|-. .++..++.++++......+.+.+.+ ++.-...+-++..+||..++
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af-~~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA-NS-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 4466667777788999999876654 33 5643 4455566666666666666666665 33345666677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++....++.....+.++....++.+...+.... ..+. .....+ ......+.+.+..-+...+.++..+.+..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~---~~~~~~--r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL---KQKSGN--RLLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh---hhccCc--EEeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999988888888888888888888887764321 1110 000000 0001111111111222234444444444333
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCCCCC----CCC-------CchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC-Cchhh
Q 039800 215 TVLHILFIAFVILMGFWK-DPKNPSG----FFP-------YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV-KDIPI 281 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~-~~~~~~~----~~~-------~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p~ 281 (576)
....+...+..++..... .+++..+ ..+ +.....+.++....|+|.+.......-+|+|||+ |+..+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~ 292 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL 292 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH
Confidence 322222222222222222 1111110 000 0113467788899999999999999999999863 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q 039800 282 GVSGSVIIVTVLYCLMAASMSMLMPY 307 (576)
Q Consensus 282 ai~~~~~~~~i~y~~~~~~~~~~~~~ 307 (576)
.+..++..+.++|.+..+.-....+.
T Consensus 293 v~~~s~~i~~~lY~~~G~~GYl~fG~ 318 (467)
T PTZ00206 293 ASTIAMGMCFTMYVLTAFFGYMDFGR 318 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999988876665553
No 58
>PLN03074 auxin influx permease; Provisional
Probab=99.14 E-value=1.3e-07 Score=100.17 Aligned_cols=234 Identities=10% Similarity=0.036 Sum_probs=126.2
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHH----HhhhcCcCCCchh-----HH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYT----EFAVDMPVAGGAF-----SY 124 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~----el~~~~p~~Gg~y-----~~ 124 (576)
.-+..+...-.+...+|.|++..|... .. +|-. .++..++.++++...+..+. |...+.|+.+-.| +|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af-~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSF-SQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHH-HH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 455566666678888999999876654 33 6654 55566666766666666544 5666676644222 23
Q ss_pred H---HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 125 L---RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG-VPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 125 ~---~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
. ++.+||.++.+......+.....+..+....++.+..+-. .+...| ..+.+++.+.+..
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~~--- 186 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTVF--- 186 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHHH---
Confidence 3 3467888777665433333333333333332322222211 111111 1122222222222
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCch
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDI 279 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 279 (576)
....|..+.+..+.....+.....+.+..... +......-.+.++..++.++...+|+|.|.-....+-.|+|||+ +.
T Consensus 187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F 265 (473)
T PLN03074 187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 265 (473)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cc
Confidence 22334444433333332232222222222222 21111111223455677777778999999999999999999995 68
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 039800 280 PIGVSGSVIIVTVLYCLMAASMSMLMPY 307 (576)
Q Consensus 280 p~ai~~~~~~~~i~y~~~~~~~~~~~~~ 307 (576)
++....+...+..+|+...+......++
T Consensus 266 ~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 266 KYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 8888888887888877766654444443
No 59
>PRK11375 allantoin permease; Provisional
Probab=99.07 E-value=3.7e-06 Score=89.68 Aligned_cols=329 Identities=10% Similarity=0.018 Sum_probs=158.0
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFS 123 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~ 123 (576)
..++-+|+.++++.+.+=++..+..+.+...+..+. .|-+ ++++.+++.++........+..+. +.| +...
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~---~~Gl~~~v 93 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVLNGAAGS---KYGVPFAM 93 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCChhH
Confidence 344456778999988887777765444422333332 3332 445555555444444444444444 444 4677
Q ss_pred HHHHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCC-CCCchh-hHHHHHHHHHHHHHH
Q 039800 124 YLRVTFGEFAAFLTGSNLI-LEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLP-DGFNEI-DVLAVAVVLVITFVI 200 (576)
Q Consensus 124 ~~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 200 (576)
..+..||.+.+.+.+.... +..+...+......++.+...+....+.+...-++++ .+.... .+..+++.++.+.+.
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~ 173 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG 173 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 8888999887777776653 4555555555555555554333111000100000000 011111 123334445555667
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCC-------chhHHHHHHHHHHHHHh-hhhhHhhhhhh
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPY-------GAKGVFNGAAMVYLSYI-GYDAVSTMAEE 271 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~-------g~~~~~~~~~~~~~~f~-G~e~~~~~~~E 271 (576)
..|.|...+++.+...+.++..+.+.+..+.. +.+......+. ....+..++...+-.+. +.-..+.++..
T Consensus 174 ~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy 253 (484)
T PRK11375 174 FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN 253 (484)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc
Confidence 78999999999888888766655555444433 22111111111 12334444433333333 33345566677
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHHH-HhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH-HH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL-VA 349 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 349 (576)
.|+++ +.-++...+..+...+..+..+.. ......-.....+| .+++. ..++.....+..+..+++..++.. .+
T Consensus 254 ~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~--~~~~~~~~~~a~l~~v~a~~~tN~~~N 329 (484)
T PRK11375 254 AHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQ--RWDSLFASFFAVLVILMTTISTNATGN 329 (484)
T ss_pred cCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHH--HhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 77753 444565555555444332222221 11111000012333 33444 333344444455555556555533 34
Q ss_pred HhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhh
Q 039800 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT 398 (576)
Q Consensus 350 ~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~ 398 (576)
.++.+--+ .+.+||.. |.| ++.++.++++.++....
T Consensus 330 ~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 330 IIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPWK 365 (484)
T ss_pred cccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccHH
Confidence 44444333 44667543 312 35666666666655443
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.00 E-value=2.5e-06 Score=82.67 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=163.8
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGP---AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGS 139 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 139 (576)
+..++.++|.|.- .|+-.-+.-|+ ...++.++++++....+....|+++++.. ...-++.++.+||.++...-.
T Consensus 10 f~~ig~~vGAGfA--sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGFA--SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence 3445677888843 34333233444 38889999999999999999999999973 347788999999999887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHH
Q 039800 140 NLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS-TRDSSVVNMILTVLH 218 (576)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 218 (576)
...+.-...+.....+.++.+.+.++.+ .| +-+++++.+...+..++ ++..-+++.+.+.+.
T Consensus 87 ~iif~lf~~~vVM~AGags~~~e~~~lP--~w---------------iGali~i~~v~i~lfl~~vegi~tvn~iI~P~L 149 (349)
T COG3949 87 IIIFFLFSTAVVMLAGAGSLLEEMFGLP--YW---------------IGALIIILLVLILLFLGRVEGIITVNGIITPFL 149 (349)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhCcc--HH---------------HHHHHHHHHHHHHHHHhcccceeeeheeHHHHH
Confidence 4444333333333333444676666542 22 33355666666666666 788888888777776
Q ss_pred HHHHHHHHHHhhccCCCC-CCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHH
Q 039800 219 ILFIAFVILMGFWKDPKN-PSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYC 295 (576)
Q Consensus 219 l~~~~~~~i~~~~~~~~~-~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~ 295 (576)
++.+.............+ .+.. ...+|..-..+ ...+-..........+++|+|++ |+.-++-..+-++.+++..
T Consensus 150 Ii~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~ 227 (349)
T COG3949 150 IIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLF 227 (349)
T ss_pred HHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHH
Confidence 666443333333321111 1111 11222211111 11111123344456778999995 6777888888888888888
Q ss_pred HHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 296 LMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLG 352 (576)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (576)
+.........| +-.+.+-|..++.+ ..+ +....++.+.......++..+.+++
T Consensus 228 l~nlsLi~~~~-~v~~~dIP~l~i~~--~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 228 LINLSLIALYD-KVVNYDIPLLTIAK--NFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHhhcc-hhhccCCcHHHHHH--hcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666444 33455779999998 666 6666677777777777776665554
No 61
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=98.86 E-value=5e-09 Score=73.02 Aligned_cols=51 Identities=35% Similarity=0.906 Sum_probs=49.2
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhccc
Q 039800 496 WGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHAS 546 (576)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 546 (576)
||+|.+|++|.++++.|++++.+++..+|+.+++|+++|+++|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 688999999999999999999999999999999999999999999999985
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=98.82 E-value=0.00027 Score=73.87 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=116.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+|+ +.++.+..-++..+....+...+.. ...-+. .++++.+++.++........+..+.+.-. ......+..||.
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~ 83 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGE 83 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhch
Confidence 344 7777665555544443333222222 111122 25566666655555444444444444322 466677889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
+.+.+.+....+..+...+.+....+..+...++.+.+ ...+++.++.+.....|.|...+++
T Consensus 84 ~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~~-----------------~~~~i~~~l~~~~~~~G~~~i~~~~ 146 (404)
T PRK11017 84 KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDIN-----------------LLIVLSGLLMTVTAYFGISALTILS 146 (404)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777776666666666666555555442210 2233344555666678889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-C-CCCCCCCCCCchhHHHHHHHHHHHH-HhhhhhHhhhhhhhcCcCCchhhHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-D-PKNPSGFFPYGAKGVFNGAAMVYLS-YIGYDAVSTMAEEVKNPVKDIPIGVSGSVI 288 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 288 (576)
++......+..+...+....+ + .+......+.+...+..++...+-. ..+.-..+.++...|+++ +.-.+...+..
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~ 225 (404)
T PRK11017 147 RIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFF 225 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHH
Confidence 988877766655544433332 1 1111111122223344444332222 233445566777777764 33355555544
Q ss_pred HHHH
Q 039800 289 IVTV 292 (576)
Q Consensus 289 ~~~i 292 (576)
+...
T Consensus 226 i~~~ 229 (404)
T PRK11017 226 LGNS 229 (404)
T ss_pred HHHH
Confidence 4333
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.80 E-value=8.4e-05 Score=76.64 Aligned_cols=168 Identities=10% Similarity=0.075 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 039800 90 IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTA 169 (576)
Q Consensus 90 ~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (576)
.+++.+++-++........++++.+...+ ...-.+..||...+.+.....++.++...+.+....++..... ...+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--~~~~ 129 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--TGLP 129 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--CCCc
Confidence 56666666666666666666666665433 3444566889988888888888887777777766655542221 1111
Q ss_pred ccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC-CCCCCCCchhH
Q 039800 170 KWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKN-PSGFFPYGAKG 247 (576)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~-~~~~~~~g~~~ 247 (576)
.....++..++.++...+|.|...+++++......+..+..+...+-. +..+ ...-.|.++..
T Consensus 130 ---------------~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T COG1457 130 ---------------VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLS 194 (442)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchh
Confidence 113444555677888899999999999999999888876666665552 2111 11112445556
Q ss_pred HHHHHHHHHHHHhhhh-hHhhhhhhhcCcC
Q 039800 248 VFNGAAMVYLSYIGYD-AVSTMAEEVKNPV 276 (576)
Q Consensus 248 ~~~~~~~~~~~f~G~e-~~~~~~~E~k~p~ 276 (576)
+..++..++-.+..+- .++..+.-.|+|+
T Consensus 195 fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 195 FLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 6666666554444443 3345555556554
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.75 E-value=0.00022 Score=76.63 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=154.3
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHH---HHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISY---AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.|+++++.......+..++++.+......... .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 47789888877777777777666665544443 3433 11111 111112223444455666655 345799999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||+. ...+.+....+..+...+......+..++..++.+... .+.+..++...+...-|.|..
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~----------------~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYET----------------GLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----------------HHHHHHHHHHHHHHhccHHHH
Confidence 9954 56666666666666667777777788888877643210 122222333445556788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCchh--HHHHHH-HHHHHHHhhhhhHhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGAK--GVFNGA-AMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~f~G~e~~~~~~~ 270 (576)
.....+-..+.++..+++....+.. +++.+.+..+.++. ...... ........+.....+=.=
T Consensus 182 ~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 261 (483)
T PRK09442 182 VLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCM 261 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777666666555544433322211 11111222222211 111111 111222233333333333
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHHHHH-Hh--cccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SM--LMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~--~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
..||+ |+..|+..++.+....+++...+.- .. ..|. ..+++..++....+ .. ++++..++..+++.+.+++..
T Consensus 262 aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~-~l-p~~l~gl~~a~~~aA~mST~~ 337 (483)
T PRK09442 262 SYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLK-VL-PPFAAGIFLAAPMAAIMSTVD 337 (483)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHH-Hc-CHHHHHHHHHHHHHHHHHHHH
Confidence 35775 5788888888766665554433321 11 2232 22234445555552 44 488888888888888888888
Q ss_pred HHHhhHHHHHHHHhhc
Q 039800 348 VAMLGQARYMCVIGRS 363 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~d 363 (576)
+.+.+.+-. ++||
T Consensus 338 s~l~~~ss~---~~~D 350 (483)
T PRK09442 338 SQLLQSSST---IIKD 350 (483)
T ss_pred HHHHHHHHH---HHHH
Confidence 877766653 4455
No 65
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.70 E-value=2.8e-09 Score=112.16 Aligned_cols=357 Identities=12% Similarity=0.117 Sum_probs=197.6
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc---CCCchhHHHHHHh
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP---VAGGAFSYLRVTF 129 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p---~~Gg~y~~~~~~~ 129 (576)
|+-+.++.+...++.++|+|++..|-.... +|-. .++..++.++++......+.|.....| +.....+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~--~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ--SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467889999999999999999988765533 5654 556667777888888888888888765 3333444457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||+.++++.....+.....+..+....++.+..+++...+... .+. . ...++...+..-+. -.|....
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~-------~~~--~-~~~~i~~~i~~pls--~~~~l~~ 146 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLF-------ISR--Y-VWIIIFALIVLPLS--FLKNLKS 146 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccc-------ccc--c-cccccccccccccc--ccchhhH
Confidence 9999988888777777777776666666666665543211100 000 0 11111111111111 1233333
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcc----CCCCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCC--c
Q 039800 210 VNMILTVLHILFIA--FVILMGFWK----DPKNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK--D 278 (576)
Q Consensus 210 ~~~~~~~~~l~~~~--~~~i~~~~~----~~~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r--~ 278 (576)
+........+.... .+.+..... +..+. ....+..+.++..++....++|.+........+|+|+|+| +
T Consensus 147 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 147 LRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 32222222222211 111111111 11111 1112344678999999999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 279 IPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 279 ~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
+.|+...+...+.++|.+..+.-....+.+ .+ ++...-+. ...+...+..+...+..+.+.--..+...+.+.
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~--~~il~n~~----~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~ 299 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQ--GNILLNLP----NDDVLIIIARILLVISLLLSYPLQLFPARNSLE 299 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeee-ec--chhhhcCC----CcccccccccccchhhhhhccccccchhHhhhh
Confidence 559999999999999999888766555432 11 12222222 111333444444444544444344444555555
Q ss_pred HHhhcC--CCchhhhhhcCCCCCchhHH-HHHHHHHHHHHH-hhcHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCC
Q 039800 359 VIGRSS--VVPAWFARVHPKTSTPVNAS-AFLGIFTAAIAL-FTDLTVLLNLVSI--GTLFVFYMVANAVIYRRYVNLGT 432 (576)
Q Consensus 359 a~a~dg--~lP~~~~~~~~~~~~P~~ai-~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~ 432 (576)
..-++. ..++ ..+..++.+..+..+ ....+++.+++. ..+++.+.++.+. +..+.|+++...+++.+++++++
T Consensus 300 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 300 NLLFKRAASSRD-SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred hheecccccccc-ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 544321 0000 000010111111111 112222222222 2567777777543 34677888888888877665543
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.60 E-value=0.0012 Score=70.88 Aligned_cols=283 Identities=11% Similarity=0.047 Sum_probs=151.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHH---HHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISY---AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.|+++++......++..++.+.+...+..... .|... ...+ ..+.+.....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 47799999888888888887777665544433 34331 1111 111111112233344445544 345799999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||++ ...+.+....+...........+.+..++..++.+... .+.+..++.+.+...-|.|..
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~----------------~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLT----------------ALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------------HHHHHHHHHHHHHHhhhHHHH
Confidence 9954 45666665555555555666666777777777643210 122222334455556788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--C------------CCCCCCCCCCchh--HHHHHH-HHHHHHHhhhhhHhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK--D------------PKNPSGFFPYGAK--GVFNGA-AMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~--~------------~~~~~~~~~~g~~--~~~~~~-~~~~~~f~G~e~~~~~~~ 270 (576)
...+.+-..+.++..+++....+.. + ++...++.+.++. .+.... ....+...+.....+-.-
T Consensus 181 ~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~ 260 (471)
T TIGR02119 181 ALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCM 260 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 7777776666655554444333222 1 1111122222211 111111 111122223333333444
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHHHHH-Hh-cccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SM-LMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
..||+ |+..|+...+.+....++....+.- .. ...++..+++..++....+ .+ ++++..++....+.+.+++..+
T Consensus 261 aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~-~l-p~~~~gl~~a~llaA~mST~~s 337 (471)
T TIGR02119 261 SYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIK-VL-PPILAGIFLAAPMAAIMSTVNS 337 (471)
T ss_pred hcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHH-Hc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 55774 6888998888766655554433321 11 1122222234445555542 44 4788888888888888888888
Q ss_pred HHhhHHHH
Q 039800 349 AMLGQARY 356 (576)
Q Consensus 349 ~~~~~sR~ 356 (576)
.+.+.|-.
T Consensus 338 ~l~~~ss~ 345 (471)
T TIGR02119 338 LLLQSSST 345 (471)
T ss_pred HHHHHHHH
Confidence 77777655
No 67
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.57 E-value=0.0003 Score=72.73 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=162.8
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+.++.-.|+|-..-|+..-.. +|.. +.++++++++..=..+.. +. -..||.+.=..+..||..|.+....
T Consensus 11 ~LFamFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvi----a~--~~~~~~~~~l~~~v~~~f~~if~~~ 83 (427)
T PF05525_consen 11 ALFAMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVI----AV--AKSGGGIEDLASRVGPKFALIFTIL 83 (427)
T ss_pred HHHHHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH----HH--hhcCCCHHHHhcccCcHHHHHHHHH
Confidence 334444678877777766555 6654 444555555443222221 11 1234344444445577766655532
Q ss_pred HHHHHHHHHH--HHHHHHHH----HHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 141 LILEYVMSNA--AVARGFAS----YFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 141 ~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
. |....+ +..+..+. -+...++. ...+ ...+..+++..+..++.+..-|...++.+++
T Consensus 84 i---~l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk~L 147 (427)
T PF05525_consen 84 I---YLSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNI------------SLLIFSIIFFAITYLLSLNPSKIVDRIGKFL 147 (427)
T ss_pred H---HHHHHhcccCcchhhhhHHHhhhccCCc-cccc------------chhhhhHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 2 211111 11122221 12222221 1111 1225677778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC---CCCC-CCCCCc-hhHHHHHHH----HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHH
Q 039800 215 TVLHILFIAFVILMGFWKDP---KNPS-GFFPYG-AKGVFNGAA----MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~~~---~~~~-~~~~~g-~~~~~~~~~----~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~ 285 (576)
+...++.++++++.++.+.. .... ++.++. ..|+..|-- .+...|...-..+--....||+ |+..|.+..
T Consensus 148 TP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ 226 (427)
T PF05525_consen 148 TPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIK 226 (427)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 99999999999999988721 1111 111111 122222211 1223333333333333333443 344444444
Q ss_pred HH----HHHHHHHHHHHHHHHhcccC-C-cCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 286 SV----IIVTVLYCLMAASMSMLMPY-D-MIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 286 ~~----~~~~i~y~~~~~~~~~~~~~-~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
+- ....++|......=....+. + +.+....+..+.++ .+| +.+..++.+.+.++|+++..+.+.+++.....
T Consensus 227 ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~-~~G-~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 227 AGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANH-LFG-SAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHH-HcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33444455444432211111 1 11222344555554 666 77889999999999999999999888887544
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNAS-AFLGIFTAAIALFTDLTVLLNLVSIGTLFVF 415 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (576)
..| +.+++.. ++.++++.+++-+ .++.+.++..-...+.|
T Consensus 305 -------------~~~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 305 -------------LFP--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIY 345 (427)
T ss_pred -------------Hhc--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHh
Confidence 442 3444433 2334455444443 56777777766666666
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.55 E-value=0.0016 Score=69.97 Aligned_cols=283 Identities=10% Similarity=0.092 Sum_probs=135.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhc----CcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVD----MPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~----~p~~Gg~y~~~~~ 127 (576)
.|+++++-......+..+++..+...+..... .|....+. .++..+ .+...+.+++--++ .++.-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 46788887765555555665555543333223 45432221 122222 22223333332222 2234468999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 128 TFGE---FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 128 ~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
.||+ ....+.+....+......+....+.+..++..++.+... .+.+...+.+.+...-|.
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~----------------~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKT----------------GLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH----------------HHHHHHHHHHHHHHhhhH
Confidence 9994 344445544444555556666666777777776643210 122222334455556677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhh
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~ 270 (576)
|.......+-..+.++..+++.+..+.+ +++.++.+.+.++.++...+... ..+.|.....+=.=
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~p~~~qR~~ 255 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWG-LGYFGQPHIIVRFM 255 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHH-HHhccchHHHHHHH
Confidence 7777666665555554443333332222 11111212222222222211111 11122222222122
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHH----HHHHhcccCCcC---CCCchHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMA----ASMSMLMPYDMI---DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~----~~~~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
-.||+ |+..|+...+.......++... ..........+. +++..++.... ..-++++..++....+.+.+
T Consensus 256 aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~--~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 256 AIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQ--ILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHH--HhccHHHHHHHHHHHHHHHH
Confidence 23554 5777887766543322221111 111111111111 23344555555 33447888888888888889
Q ss_pred HHHHHHHhhHHHHH
Q 039800 344 TSLLVAMLGQARYM 357 (576)
Q Consensus 344 ~~~~~~~~~~sR~l 357 (576)
++..+.+.+.|-.+
T Consensus 333 ST~~s~l~s~ss~~ 346 (487)
T TIGR02121 333 STISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888888877653
No 69
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.54 E-value=0.0017 Score=70.03 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHH----HhhhcCcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYT----EFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~----el~~~~p~~Gg~y~~~~~ 127 (576)
.|+++++.......+..+++..+...+..... .|....+. .++..+... ....+. .-..+.+..-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 47799998887777777877777655444433 45543221 222222211 111111 111223345578999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 128 TFGE---FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 128 ~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
.||+ ....+.+....+......+......+..++..++.+.. ..+.+...+...+...-|.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~----------------~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYE----------------TALWAGAAATILYTFIGGF 180 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHHhhhH
Confidence 9984 45555555555555556666666667777777664321 1222223334445556677
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 039800 205 RDSSVVNMILTVLHILFIAF 224 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~ 224 (576)
|.....+.+-..+.++..++
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~ 200 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALIL 200 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777666666555544433
No 70
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.51 E-value=0.0004 Score=72.95 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=157.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE- 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~- 131 (576)
.|+++++......++..++++.+......... .|...++..+...+..+..+..+.+.-++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 37789988888888878887777666555444 4543332222223334456666666655544 45799999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
....+.+....+..+...+....+.+..++..++.+... .+.+...+...+...-|.|......
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~----------------~~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYL----------------SLLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----------------HHHHHHHHHHHHHHHcchHHHHHHH
Confidence 566677777777778888888888888888877643211 1222223334455567888777776
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-C-C-------CCCCC----------CCCCc---hhHH---HHHHHHHHHHHhhhhh-H
Q 039800 212 MILTVLHILFIAFVILMGFWK-D-P-------KNPSG----------FFPYG---AKGV---FNGAAMVYLSYIGYDA-V 265 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~-~-------~~~~~----------~~~~g---~~~~---~~~~~~~~~~f~G~e~-~ 265 (576)
.+-..+.++..+++.+..+.+ + + .+..+ ...++ ...+ ..+.+.....+. .+. .
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~ 222 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW-TNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh-cCHHH
Confidence 666666555443333332222 0 0 00000 00000 0011 111111111111 111 1
Q ss_pred hhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh--ccc----CCc----CCCCchHHHhhccCCCChhHHHHHH
Q 039800 266 STMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM--LMP----YDM----IDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 266 ~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~--~~~----~~~----~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
.+=.=-.|| +|+.+|+...+.+...+++....+. +.. ..+ ..+ .+.+..++.... ..-++++..++
T Consensus 223 ~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~--~~lp~~l~gl~ 299 (407)
T TIGR00813 223 VQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQ--ELMPPGLAGLF 299 (407)
T ss_pred hhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHH--HHcCcchHHHH
Confidence 122223366 4688899888877666655433322 111 122 111 133444555555 33347888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.+..+.+.+++..+.+.+.|-.+
T Consensus 300 ~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 300 LAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888888888887776654
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.47 E-value=0.0028 Score=65.72 Aligned_cols=182 Identities=8% Similarity=0.069 Sum_probs=105.9
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
...+.+|+.++++.+.+=.+.....+.+...+......-++. .+++.+++-++.......-+..++++-- ..-.-.+
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~R 110 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSR 110 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHH
Confidence 444567889999998887777766555555555544423343 6666777666665555555444444322 1334567
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccC--CCCCCCchhhHHHHHHHH-HHHHHHHhc
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVD--GLPDGFNEIDVLAVAVVL-VITFVICYS 203 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g 203 (576)
..||-..+-.-.....+.-+..-..++...+.-++.++...-+.++...+ +...... ...++..+.+ +-..+...|
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt-~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTT-LELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcH-HHHHHHHHHHHHHHHHHhcC
Confidence 77887666655555555555555555555555555443321111111110 0111111 1234443333 344556779
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
.+...|++.+...+..+..+.+.+....+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~ 218 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVK 218 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 99999999999999988888888887776
No 72
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.42 E-value=0.0024 Score=67.79 Aligned_cols=239 Identities=10% Similarity=0.044 Sum_probs=123.4
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP---AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
.++-+|+.++++.+.+=++..+....+..-+... . .|- .++++.+++.++........+..+.+.-. ......
T Consensus 7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~s 82 (442)
T TIGR00800 7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLS 82 (442)
T ss_pred CCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhh
Confidence 3445566799998888777776544443322222 1 232 25556666655555555555555554432 466778
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHH--HHHHhc
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVIT--FVICYS 203 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g 203 (576)
+..||.+.+.+.+...++..+...+.+....++.++..++.-.+.+.. .+.+.+....+..++...+. +....|
T Consensus 83 R~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~----~~~~~t~~~~~~~~i~~~l~~~~~~~~g 158 (442)
T TIGR00800 83 RASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH----LGNGMTTLELICFIIFWALVLVFLFFFG 158 (442)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc----cCCcccHHHHHHHHHHHHHHHHHHHcCH
Confidence 889999988888888888888888888888877666554321111000 00000001123222322222 234556
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCC-C----CCCCchhHHHHHHHHHHHH-HhhhhhHhhhhhhhcCcC
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWKD-PKNPS-G----FFPYGAKGVFNGAAMVYLS-YIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~-~----~~~~g~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~ 276 (576)
.|...+.+.......++.+++++......+ ..+.. . -.+.....++.++...+-. ..+....+.++...|+++
T Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~ 238 (442)
T TIGR00800 159 YKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK 238 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc
Confidence 666666655555554444433332222111 11111 1 1122334455554443322 234445667778888764
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCL 296 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~ 296 (576)
+..++...+.....+...+
T Consensus 239 -~~~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 239 -TAIWGQFLALPGGFTLTCF 257 (442)
T ss_pred -chHHHHHHHHHHHHHHHHH
Confidence 4556655555555444333
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.37 E-value=8.3e-05 Score=78.14 Aligned_cols=289 Identities=17% Similarity=0.154 Sum_probs=137.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEF 132 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 132 (576)
.|+++++......++..+|.+.+......... .|....+..+...+.....++.++.--++ .+.-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCc
Confidence 47789988887777877887777665544444 45443322222233333334444443332 34457999999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 133 A--AFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 133 ~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
. ..+.+....+..+...+....+.+..++..++.+... .+.+...+...+...-|.|.....
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~----------------~~~i~~~i~~iYt~~GGl~av~~t 146 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNT----------------AILIVGVIVIIYTFFGGLRAVAWT 146 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHH----------------HHHHHHHHHHHTTCTT------SH
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccchhhhH----------------HHHHHHHHHHHhhhhhhHhhhhHH
Confidence 7 5665555666677777888888888888887643211 112222223333445577766655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCch---hHHHHHHHHHHHHHhhhhhHhhhhhhh-
Q 039800 211 NMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGA---KGVFNGAAMVYLSYIGYDAVSTMAEEV- 272 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~---~~~~~~~~~~~~~f~G~e~~~~~~~E~- 272 (576)
+.+-..+.++..+++.+..+.. +++..+.+.|.+. .+........+....|.....+.....
T Consensus 147 d~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 226 (406)
T PF00474_consen 147 DFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFL 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHH
Confidence 5555554444443333332221 1211111222221 000100000001112333223333332
Q ss_pred --cCcCCchhhHHHHHHHHHHHHHHHH------HHHHHhcccC----CcCCCCchHHHhhccCCCChhHHHHHHHHHHHH
Q 039800 273 --KNPVKDIPIGVSGSVIIVTVLYCLM------AASMSMLMPY----DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASF 340 (576)
Q Consensus 273 --k~p~r~~p~ai~~~~~~~~i~y~~~------~~~~~~~~~~----~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (576)
||+ |+..|++..+.....+++... ........|. +..+++..+..... ...+++...++...++.
T Consensus 227 aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~gl~~~~~~a 303 (406)
T PF00474_consen 227 AAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAA--QYLPPGLAGLFLAGILA 303 (406)
T ss_dssp SSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT---TS-TTHHHHHHHHHHH
T ss_pred hcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhh--hhccchhHHHHHHHHHH
Confidence 443 577888777655444433331 1112222221 11223445666666 44448888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 341 GILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 341 ~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
+.+++..+.+.+.+-. ++||=.
T Consensus 304 A~~ST~~s~l~a~ss~---~~~Di~ 325 (406)
T PF00474_consen 304 AIMSTADSLLLAISSI---FSRDIY 325 (406)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHCC
T ss_pred hhhHHHHHHHhhhhhh---hhHHhh
Confidence 8888888888877765 456633
No 74
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.27 E-value=0.0051 Score=63.75 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CCCCCCc-hhHHHHHHH----HHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP----SGFFPYG-AKGVFNGAA----MVYL 257 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~~~~g-~~~~~~~~~----~~~~ 257 (576)
+..+++..+..++.+..-|...++.++++...++.++++++.++.+...+. +.+..+. ..|+..|-- .+..
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal 203 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAM 203 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHH
Confidence 567777788888889999999999999999999999999999888721111 1111111 112222111 1223
Q ss_pred HHhhhhhHhhhhhhhcCcCCchhhHH----HHHHHHHHHHHHHHHHHHHhccc-CCcCCCCchHHH-hhccCCCChhHHH
Q 039800 258 SYIGYDAVSTMAEEVKNPVKDIPIGV----SGSVIIVTVLYCLMAASMSMLMP-YDMIDAEAPFSG-AFSGKSDGWKWVS 331 (576)
Q Consensus 258 ~f~G~e~~~~~~~E~k~p~r~~p~ai----~~~~~~~~i~y~~~~~~~~~~~~-~~~~~~~~p~~~-~~~~~~~g~~~~~ 331 (576)
.|...-..+.-....||+ |++.|.. ..+.....++|......=....+ .++.++...... ...+ .+| +++.
T Consensus 204 ~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~-~~G-~~G~ 280 (439)
T PRK15433 204 VFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQH-TFG-GGGS 280 (439)
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHH-HhC-HHHH
Confidence 332222222233335554 3344444 34444444455554443222211 111212222222 2222 666 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchh-HHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 039800 332 NVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVN-ASAFLGIFTAAIALFTDLTVLLNLVSIG 410 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~-ai~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (576)
.+..+....+++++..+...+.++.+...- | .|+. .+++..+++..++-+ .++.++.+..-.
T Consensus 281 ~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-----~-----------isY~~~v~i~~l~S~~lSn~-G~~~II~~s~Pi 343 (439)
T PRK15433 281 FLLAALIFIACLVTAVGLTCACAEFFAQYV-----P-----------LSYRTLVFILGGFSMVVSNL-GLSQLIQISVPV 343 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C-----------CcHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 999999999999999999998888754421 1 2332 233334444444433 456666666555
Q ss_pred HHHHH
Q 039800 411 TLFVF 415 (576)
Q Consensus 411 ~~~~~ 415 (576)
..+.|
T Consensus 344 L~~iY 348 (439)
T PRK15433 344 LTAIY 348 (439)
T ss_pred HHHHh
Confidence 55555
No 75
>PRK10484 putative transporter; Provisional
Probab=98.25 E-value=0.013 Score=63.60 Aligned_cols=291 Identities=11% Similarity=0.054 Sum_probs=136.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHH-HHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAI-AGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li-~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++-......+..+++..+...+..... .|....+ |.. ..+..++.++.++.--.+. +.-..++|.++.||+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA-WEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 47899998877777777777767655444433 4544321 222 2222333444444332332 334789999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHH--HHHHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYVMS-NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVA--VVLVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~ 208 (576)
......+....+.+... .+......+..++..++...- . +.+. .....+.++ .++...+...-|.|...
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~-~-----gi~~--~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL-L-----GISY--GAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-c-----CCcH--HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 76665555544444432 222222333333333221100 0 0000 000011111 12224444556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----------------CCCCCCCCCC----CchhHHHHHHHHHHHHHhhhh-hHhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK----------------DPKNPSGFFP----YGAKGVFNGAAMVYLSYIGYD-AVST 267 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~----------------~~~~~~~~~~----~g~~~~~~~~~~~~~~f~G~e-~~~~ 267 (576)
....+-..+.++..+++.+..+.. +++.+....+ ..+...+.+.......+.+.+ ...+
T Consensus 186 ~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q 265 (523)
T PRK10484 186 VSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQ 265 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 766666555544433322221111 1111111111 122223333322212222211 2222
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHHHH---HHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA---SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILT 344 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (576)
=.=-.||+ |+..|+...+.....++++...+ ......|.+..+++..++....+ .. ++++..++....+.+.++
T Consensus 266 R~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~-~l-p~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 266 RALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVND-VL-PVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHH-Hc-chhHHHHHHHHHHHHHHH
Confidence 22233663 57778887776555444333221 11112232222334456665552 44 377888888888888888
Q ss_pred HHHHHHhhHHHHH
Q 039800 345 SLLVAMLGQARYM 357 (576)
Q Consensus 345 ~~~~~~~~~sR~l 357 (576)
+..+.+.+.|-.+
T Consensus 343 T~~s~l~s~st~~ 355 (523)
T PRK10484 343 TFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776653
No 76
>PRK09395 actP acetate permease; Provisional
Probab=98.25 E-value=0.014 Score=63.78 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=87.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++......++..+++..|...+..... .|...++ +.++..+... ..+.+++--++. ..-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~-g~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNL-GKYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHcCC
Confidence 47789888777666777776666655544433 4544322 2233322222 233333322222 22467888889998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++..++.+. + ..+.+..++...+...-|.|.....
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~--~--------------~~ili~~~i~~iYt~~GGm~av~~T 208 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY--H--------------VAVVLVGVLMMVYVLFGGMLATTWV 208 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHhhcchHHHHHH
Confidence 55788877777766666667777777777777766432 1 1222233334445555688877777
Q ss_pred HHHHHHHHHHHHHHH
Q 039800 211 NMILTVLHILFIAFV 225 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~ 225 (576)
+.+-..+.++..+++
T Consensus 209 D~iQ~iim~~g~ii~ 223 (551)
T PRK09395 209 QIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555544333
No 77
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.19 E-value=0.0088 Score=64.23 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=143.9
Q ss_pred ccccChHHHHHHHhhhh-hhhhHHhchHHhhhhccchH-HHHHHH---HHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGM-VGAGVFVTTGRASRLNAGPA-IVISYA---IAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~-~~~~~l---i~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
.|+++.+ ..+++.+.. .+...+...+..... .|.. .++... ...+.....+--..+++ +.++.-..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 4778888 555555444 553334433333333 4554 333222 33344555666677777 66667789999999
Q ss_pred Hhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 128 TFG-EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 128 ~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
.|| +....+.+....+..+...+....+.+..++..++.+... ...++...+..+...-|.|.
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~----------------~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVT----------------GILIGALIVALYTFLGGLRA 177 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH----------------HHHHHHHHHHHHHHHcChhH
Confidence 999 8888999988888889999999988888887777632210 12222233344444556665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCCC----CCCCC-CchhHHHH---HHHHHHHHHhhhhhHhh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-----------DPKNP----SGFFP-YGAKGVFN---GAAMVYLSYIGYDAVST 267 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-----------~~~~~----~~~~~-~g~~~~~~---~~~~~~~~f~G~e~~~~ 267 (576)
......+=..+.++.+..+.+..... +..+. .++.. ..+..... .....+..+...+...+
T Consensus 178 v~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r 257 (493)
T COG0591 178 VVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPR 257 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhh
Confidence 55554444444333333222222221 11111 11111 11111111 11112333444444444
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHH-----HHHHHhcccCC-----cCCCCchHHHhhccCCCChhHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLM-----AASMSMLMPYD-----MIDAEAPFSGAFSGKSDGWKWVSNVIGVG 337 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~-----~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~g~~~~~~~~~~~ 337 (576)
.-. .|+++ +.||..........+.+++. ........... +.+.+..++.... ..-++|...++...
T Consensus 258 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~p~~~~g~~~~a 333 (493)
T COG0591 258 FMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLIL--ALFPPWIAGLLLAA 333 (493)
T ss_pred hhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHH--HHChHHHHHHHHHH
Confidence 444 45543 33433333333332222222 11111111111 1233445555555 33347888888777
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 039800 338 ASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 338 ~~~~~~~~~~~~~~~~sR~l 357 (576)
++.+.+++..+.+...|-.+
T Consensus 334 ilaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777777777766665543
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.14 E-value=0.0032 Score=64.87 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhhcCc--CCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccC
Q 039800 99 LCALLSAFCYTEFAVDMP--VAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVD 176 (576)
Q Consensus 99 l~~~~~a~~~~el~~~~p--~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (576)
+++.+..+.+-|++.|+- +.-+..+-.++.+||.+++.......+........+..+.+.-++.+++.+..
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~~~------- 92 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIPLW------- 92 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH-------
Confidence 344555566666666665 23367777788899999888887777777777777777666666665543321
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCC-CCCC----CCCchhHHH
Q 039800 177 GLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DPKN-PSGF----FPYGAKGVF 249 (576)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~-~~~~----~~~g~~~~~ 249 (576)
....+..+...++.....+..+++++++..+..++.+.++...+.. ++.. .+++ .|. ..++.
T Consensus 93 ----------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~~ 161 (358)
T PF01566_consen 93 ----------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSLL 161 (358)
T ss_pred ----------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHHH
Confidence 2222233333333332345577777777777666654444444433 2211 1222 222 12222
Q ss_pred HHHHHHHHHHhhhhhHhhhh---hhhcCcC---Cc-hhhHHHHHHHHHHHHHHHHHHHHH----hcc-cC-CcCCCCchH
Q 039800 250 NGAAMVYLSYIGYDAVSTMA---EEVKNPV---KD-IPIGVSGSVIIVTVLYCLMAASMS----MLM-PY-DMIDAEAPF 316 (576)
Q Consensus 250 ~~~~~~~~~f~G~e~~~~~~---~E~k~p~---r~-~p~ai~~~~~~~~i~y~~~~~~~~----~~~-~~-~~~~~~~p~ 316 (576)
..+...-.....++...+-+ |+-.+.+ ++ --|....-..+..++..+.+.++. ... +. .+.++....
T Consensus 162 ~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~ 241 (358)
T PF01566_consen 162 FAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQA 241 (358)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 22222222233333222211 2221121 11 122222223333233333222221 112 11 123334466
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 317 SGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
.+.++. ..|.++...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 242 ~~~L~~-~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 242 AQALEP-LLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHH-hcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 777875 66757899999999999999999998888888877655
No 79
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.11 E-value=0.026 Score=61.64 Aligned_cols=281 Identities=14% Similarity=0.107 Sum_probs=138.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCAL-LSAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~-~~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++.......+..++...|...+..... .|...++ +.++..+.. ...+.+++--++.- .-...+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~-~~~g~~~~~~i~~~~~a~~lrr~g-~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLI-YSLGFLVGWPIILFLIAERLRNLG-RYTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHH-HHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHcCC
Confidence 47788887765555666666555554444333 4544222 122333332 23344455444433 2467888888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++.+++.+. + ..+.+..++...+...-|.|.....
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~--~--------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNY--H--------------VAVVLVGILMVMYVLFGGMLATTWV 206 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55677777666655566666667777777777776432 1 0122222333444556688877777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---------------CCCCCCCCCCCch-hHHHHHHHHHHHHHhhhhhHhhhhhh---
Q 039800 211 NMILTVLHILFIAFVILMGFWK---------------DPKNPSGFFPYGA-KGVFNGAAMVYLSYIGYDAVSTMAEE--- 271 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~---------------~~~~~~~~~~~g~-~~~~~~~~~~~~~f~G~e~~~~~~~E--- 271 (576)
+.+-..+.++..+++.+....+ +++....+.+.+. ..-...+...+....|.-...|....
T Consensus 207 d~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~t 286 (549)
T TIGR02711 207 QIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFT 286 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeee
Confidence 7776666655544433322211 1111111112111 00111111111111222222333332
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHH-HH--hcccCC-cC-C--------CCchHHHhhccCCCChhHHHHHHHHHH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MS--MLMPYD-MI-D--------AEAPFSGAFSGKSDGWKWVSNVIGVGA 338 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~--~~~~~~-~~-~--------~~~p~~~~~~~~~~g~~~~~~~~~~~~ 338 (576)
.|| .|+..|+..++......+|+...+. +. ...+++ +. + .+........ ..++.++..++...+
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~glv~A~~ 363 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLAN--AVGGNLFLGFISAVA 363 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHH--HHccHHHHHHHHHHH
Confidence 366 4688888888877666666544322 11 122211 11 0 0111222223 333356666777777
Q ss_pred HHHHHHHHHHHHhhHHH
Q 039800 339 SFGILTSLLVAMLGQAR 355 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~sR 355 (576)
+.+.+++..+.+++.|-
T Consensus 364 ~AA~mST~~s~l~a~st 380 (549)
T TIGR02711 364 FATILAVVAGLTLAGAS 380 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666663
No 80
>PRK12488 acetate permease; Provisional
Probab=97.98 E-value=0.045 Score=59.76 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=93.6
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++.......+..+++..|...+..... .|...++ +.++....+. ..+.+++--++.. .-..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHcCC
Confidence 47899999987777777887777665544444 4544322 2333333322 2333444444333 2468889998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++.+++.+.. ..+.+..++...+...-|.|.....
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~----------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYL----------------YAVVIVGALMVLYVTFGGMLATTWV 206 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHhccchhHHHHH
Confidence 567888887777776777777777777777777664321 0122222233444456688887777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039800 211 NMILTVLHILFIAFVIL 227 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i 227 (576)
+.+-..+.++..+++.+
T Consensus 207 d~iQ~~im~~~~i~~~~ 223 (549)
T PRK12488 207 QIIKAVLLLSGTSFMAF 223 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666555544433
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.94 E-value=0.042 Score=57.94 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhcCc-CCC-chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039800 99 LCALLSAFCYTEFAVDMP-VAG-GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV 166 (576)
Q Consensus 99 l~~~~~a~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (576)
+++.+....+.|++.|.- .+| |..+-.++.+|+.++++......+........+..+.+.-++.+++.
T Consensus 72 lls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gi 141 (439)
T PRK00701 72 LLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGI 141 (439)
T ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445556677777766 334 78888899999988887665555555666666665555555555543
No 82
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.92 E-value=0.058 Score=59.00 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=88.6
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHH---HHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIV---ISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~---~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
.|+++++.......+..+++..+...+..... .|.... ++|.++ ....++.+++.-++.. .-..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~-~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFG-KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCC-CccHHHHHHHHh
Confidence 47799998887777777777666655443333 454321 222222 2234566666666664 347999999999
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 130 GE-FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 130 g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
|+ ....+++....+..+...+......+..++.+++.+... .+.+..++...+...-|.|...
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~----------------~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFET----------------GVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------------HHHHHHHHHHHHHHhhhHHHHH
Confidence 84 467777777666667777777777777777777643211 1222222334444556777766
Q ss_pred HHHHHHHHHHHHH
Q 039800 209 VVNMILTVLHILF 221 (576)
Q Consensus 209 ~~~~~~~~~~l~~ 221 (576)
....+-..+.++.
T Consensus 170 ~TD~iQ~iim~ig 182 (552)
T TIGR03648 170 WTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555544443
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.041 Score=57.01 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CCC-chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 87 GPAIVISYAIAGLCALLSAFCYTEFAVDMP-VAG-GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI 164 (576)
Q Consensus 87 G~~~~~~~li~~l~~~~~a~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (576)
|..--+..+..-++.-+.++..-|++.+.- .+| |.-+-.++.++|.+++.......+..+.+.-.+..+.+--++.++
T Consensus 43 Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 43 GAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 433334444455666667777778887776 334 577888888999999988877777777777777777777777776
Q ss_pred CCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 165 GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
+.+. .++.++..+..++.+.+- ...+++.+...+.+...+.+....+.+
T Consensus 123 ~ip~------------------~~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 123 GIPL------------------IIGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred CChH------------------HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5432 233333333333332222 566777777777776666666655555
No 84
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.90 E-value=0.044 Score=57.01 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 039800 89 AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPT 168 (576)
Q Consensus 89 ~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (576)
.++++.+++.++........+..+.+... ......+..||++.+.+......+..+...+.+....++.++..++...
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666665555555455555554432 4777888999999999888888888888888888888887777664211
Q ss_pred cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhH
Q 039800 169 AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKG 247 (576)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~ 247 (576)
+.. . ......++..+.......|.|...+++.+...+..+..+........+ +.... ..+.+..+
T Consensus 108 ~~~--------~----~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s 173 (386)
T TIGR02358 108 GEE--------S----PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMS 173 (386)
T ss_pred CCC--------c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCcc
Confidence 100 0 012222333345666678999999999999888777766555444443 22111 11111122
Q ss_pred HHHHHHHHHHH-HhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 039800 248 VFNGAAMVYLS-YIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM 303 (576)
Q Consensus 248 ~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~ 303 (576)
+..++....-. -.+....+.++...|+|+ +.-++...+..+...+..+.-.....
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 112223556667777754 45567666666665555554444333
No 85
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.87 E-value=0.0052 Score=65.04 Aligned_cols=221 Identities=14% Similarity=0.162 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCC---------CchhHHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFP---------YGAKGVFNGAAM 254 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~---------~g~~~~~~~~~~ 254 (576)
.+++++++....+.-+|. .++...+..+.++-++.+...|+.+ +++-+..++| +++.+ +..+..
T Consensus 134 ~it~~ILv~LF~iQ~~GT---~~ig~~FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG~ 209 (534)
T PF02705_consen 134 PITIAILVGLFAIQRFGT---AKIGKLFGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLGA 209 (534)
T ss_pred hHHHHHHHHHHHHHhhhh---hHHHHHHhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcch
Confidence 455556666666666664 4555557777777666666777665 4443444444 23333 233446
Q ss_pred HHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHH
Q 039800 255 VYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 255 ~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
++.+.+|-|+.- |+-=+-.+|++.++-..-+.-+.++.=+..-+.....|.+ ..+|+....- +|..+-+
T Consensus 210 V~L~~TGaEALy--ADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~~P------~~~~~p~ 278 (534)
T PF02705_consen 210 VFLCVTGAEALY--ADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLLIP------EWLLWPM 278 (534)
T ss_pred HHHHHhhHHHHH--hhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHHhH------HHHHHHH
Confidence 778889999654 3333444566666655534444333333333333322311 2455554433 4555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (576)
.+.+.++..-+..+.+.++=-+....-+-|.+|+. ..+.+++. | .|..-.+++..+..+...+.+-+.+.+...+
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 55555554444444444444555556677899952 44444333 2 5766555555555555556788888888888
Q ss_pred HHHHHHHHHHHHH
Q 039800 410 GTLFVFYMVANAV 422 (576)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (576)
+......++.+.+
T Consensus 359 AVt~tM~iTT~L~ 371 (534)
T PF02705_consen 359 AVTGTMLITTILL 371 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665543
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.79 E-value=0.077 Score=56.33 Aligned_cols=348 Identities=12% Similarity=0.098 Sum_probs=160.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhch-HHhhh--------hccch--H------------HHHHHHHHHHHHHHHHHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTT-GRASR--------LNAGP--A------------IVISYAIAGLCALLSAFCY 108 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~-~~~~~--------~~~G~--~------------~~~~~li~~l~~~~~a~~~ 108 (576)
-|.+++.++.++|.++.-+|+|+.+-. ...+. ...+. + .+.+|.+-++..+.+++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 345789999999999999998876532 11100 00111 0 1445677777777788777
Q ss_pred HHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCCcccccccCCCCCCCch
Q 039800 109 TEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSN----AAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE 184 (576)
Q Consensus 109 ~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (576)
..-.....-+...+--..+...+..|.+.-....++.+.+. +......+.-++..++.+.+...
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~------------ 218 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGL------------ 218 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHH------------
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHH------------
Confidence 76443333344444444433333445544444444444433 33333444455555655433221
Q ss_pred hhHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCC-------CCCCCCc
Q 039800 185 IDVLAVAVVLVITFVICYST-RDSSVVNMILTVLHILFIAFVILMGFWK------------DPKNP-------SGFFPYG 244 (576)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~------------~~~~~-------~~~~~~g 244 (576)
...+.+++.++.+.-...|+ |-.+++.++-..+.++.++.+.+.+-.. ..+|+ .++.+.+
T Consensus 219 ~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~ 298 (485)
T PF02028_consen 219 QIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSG 298 (485)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 11334444445555555565 3355555555555555554444444222 00111 2333344
Q ss_pred -hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHh-ccc-----CCcC---CC--
Q 039800 245 -AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM-LMP-----YDMI---DA-- 312 (576)
Q Consensus 245 -~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~-~~~-----~~~~---~~-- 312 (576)
|.+-...+.-+.|.=.+--....++.=.|. |+++.-+...++...+..++.-..+.. ... ..++ +.
T Consensus 299 ~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g 376 (485)
T PF02028_consen 299 QWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQG 376 (485)
T ss_dssp HHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcc
Confidence 544444444444444444444455555554 788555555555444433322222111 111 1111 01
Q ss_pred -CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHH--HH
Q 039800 313 -EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFL--GI 389 (576)
Q Consensus 313 -~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~--~~ 389 (576)
+....+.++ .+. +..++....++.++....+..-+.+..+-.++.+| +.+| ..+.+..|.. ++
T Consensus 377 ~~~a~~~~l~--~lP---~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 377 PEAALFAFLE--QLP---LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGA 442 (485)
T ss_dssp HHHHHHHHHH--TST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHH--Hhh---HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHH
Confidence 123444555 332 23344444444455555556666777777777665 1122 2233333332 33
Q ss_pred HHHHHHHhhcHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 390 FTAAIALFTDLT---VLLNLVSIGTLFVFYMVANAVIYRRY 427 (576)
Q Consensus 390 ~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~r~ 427 (576)
++..+...+..+ .+..+.++-..+..++.+.++++.-|
T Consensus 443 ~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~ 483 (485)
T PF02028_consen 443 LAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALK 483 (485)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 343444444444 44444444445555555666665433
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.68 E-value=0.092 Score=54.11 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=139.3
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~~~g~ 135 (576)
+....+..+.|+-+|.|-.-..+.....++|.+-++-|++..+. .-.-+...|++--.- +.+..-.|-+.. +++...
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~-~GiPlli~Ef~iGr~~~~~~~~a~~~l~-~~~~~~ 87 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL-VGIPLLLAEFAIGRRGRKNAVGAFRKLA-PKKKWE 87 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH-HhHHHHHHHHHhhhhcCCChhHHHHHhc-cCccch
Confidence 44555667778889999888888888776776644444433222 222233344432222 222222232222 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh-h
Q 039800 136 LTGSNLILEYVMSNAAVARGFA-------SYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD-S 207 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 207 (576)
..||.-.+........+....+ ..+...++.+.+.......+..++.......-.++.++..++..+|++. .
T Consensus 88 ~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 88 WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 2233222222222222221111 1111111111110000001111111111233345556666777888865 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC----------CCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHhhhhhhhcCcC
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWKDP----------KNPSGFFPYGAKGVFNGAAMVYLSY-IGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~f-~G~e~~~~~~~E~k~p~ 276 (576)
.|.+.++.....+.++++.+-.+..+. .+++.+. +...+..+.-.++|+. .|+.....++.-.++ +
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 889998888888888777776665411 0111111 1455677777888887 588888788877776 5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHh---cccCCcCCCC-----chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSM---LMPYDMIDAE-----APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~---~~~~~~~~~~-----~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
.|+++.-....+....+-++.-+.+.. ....+ .+++ .-+++++.| .--+.....+...+...+.++|..+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~Fi~LP~if~~-mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLVFIVLPAVFNQ-MPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeeehhHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 688887777766666555444433322 22222 1111 146778884 2222344444444444455544444
No 88
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.67 E-value=0.086 Score=53.58 Aligned_cols=318 Identities=15% Similarity=0.173 Sum_probs=153.5
Q ss_pred HHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHH
Q 039800 60 DLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFL 136 (576)
Q Consensus 60 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 136 (576)
..=++.++.-.|.|-..-|+..-.. +|.. +.+++++.++..=..+..- .-..||.+.=..+..||..|.+
T Consensus 9 ~~GfmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~ 81 (431)
T COG1114 9 ALGFMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVL 81 (431)
T ss_pred HHHHHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHH
Confidence 3334555555677777666654433 6653 4556666665432222211 1234554444455567777665
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCCCcccccccCCCCC-CCchhhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 039800 137 TGSNLILEYVMSNAAV--ARGFASYFGTAIGVPTAKWRLKVDGLPD-GFNEIDVLAVAVVLVITFVICYSTRDSSVVNMI 213 (576)
Q Consensus 137 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (576)
..-.. |....+.. .++.......... |-..+ +.....+..+++..+..++.+..-|...++.++
T Consensus 82 f~~~i---yLsIGPffAiPRt~~vsfe~~i~----------p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~ 148 (431)
T COG1114 82 FAIAI---YLSIGPFFAIPRTGAVSFEVGIS----------PLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKF 148 (431)
T ss_pred HHHHH---HHHhcccccCCcccchhHHHhhh----------cccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 54321 11111111 1111111100000 11111 111133567777788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-CC--CCC-CCCCCCc-hhHHHHHH----HHHHHHHhhhhhHhhhhhhhcCcCCchhhHHH
Q 039800 214 LTVLHILFIAFVILMGFWK-DP--KNP-SGFFPYG-AKGVFNGA----AMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVS 284 (576)
Q Consensus 214 ~~~~~l~~~~~~~i~~~~~-~~--~~~-~~~~~~g-~~~~~~~~----~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~ 284 (576)
++...++.++.+.+..+.+ +. +.. ....+.. ..|+..|- ..+..+|...-.-+.=..-.+++ |+..|-..
T Consensus 149 LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~ 227 (431)
T COG1114 149 LTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTI 227 (431)
T ss_pred HhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 9999999998888887766 11 111 1111111 11222221 12334444333333323333443 34444444
Q ss_pred HHHHHHHHHHHHHHHHH--HhcccCCcC---CCCchHH-HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 285 GSVIIVTVLYCLMAASM--SMLMPYDMI---DAEAPFS-GAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 285 ~~~~~~~i~y~~~~~~~--~~~~~~~~~---~~~~p~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
.+-++..+.-.+..... .+..+.+.. ++..... +.-++ .+| +.+..++.+.+.++|+++..+.+.+++..
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~-~fG-~~G~~lL~~iv~lACLTTaiGLi~a~aef-- 303 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQH-LFG-SYGSILLGLIVFLACLTTAVGLIVACAEF-- 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHH-Hhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44433333322222222 222222211 2222222 23332 555 67788999999999999999988888766
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVF 415 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (576)
|+|.-||-.-..++++ ..+++.++.- ..++.+..+..-...+.|
T Consensus 304 -----------F~~~~p~~SY~~~v~i-f~i~sflvan-~GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 304 -----------FSKLVPKLSYKTWVII-FTLISFLVAN-LGLEQIIKISVPVLTAIY 347 (431)
T ss_pred -----------HHHhcccccHHHHHHH-HHHHHHHHHH-hhHHHHHHHHHHHHHHHh
Confidence 4444442222222222 2333333332 245666666554445555
No 89
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.60 E-value=0.019 Score=59.58 Aligned_cols=243 Identities=13% Similarity=0.138 Sum_probs=130.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+++-+.+..+.-....++|+|++..|... .. .|-. .++.....+++.....+.+.+.+++.++. ....-.+..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567888888888999999999776654 33 5643 45556667777788888888888888866 455555667776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCcccccccCCCCCCCch-hhHHHHHHHHHHHHHHHhcchh
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFAS----YFGTAIGVPTAKWRLKVDGLPDGFNE-IDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
..........- .+..++.++.....+ .....+..+...-+ . .+.+. ..+....++.-.++.+-. .
T Consensus 80 ~g~~~~~v~~~-~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~-----~-~~~~~~ill~~~~~i~pLsl~k~l---~ 149 (411)
T KOG1305|consen 80 LGKVDAAVAVK-CFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSH-----Y-LDRNFLILLVLLFIILPLSLLKNL---D 149 (411)
T ss_pred CceeeehhhHH-hhhccceEEEEEEccccchhhhhcccccccccc-----c-ccceeEeehHHHHHHHHHHHHHhh---h
Confidence 54222111110 000000000000001 11111111100000 0 00011 112222222222222211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CC--CCCCCCCCCch--hHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC-Cchh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DP--KNPSGFFPYGA--KGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV-KDIP 280 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--~~~~~~~~~g~--~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p 280 (576)
.-+.....+...++.++.+.+..... .. .......+++. .+++.+++..+++|...+.....-.|+|||+ |++-
T Consensus 150 ~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~ 229 (411)
T KOG1305|consen 150 SLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQ 229 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHH
Confidence 22233333333333333333322222 11 11122233333 5789999999999999999999999999985 5788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYD 308 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~ 308 (576)
+....+...+.++|......-....+.+
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeccc
Confidence 8888888888899988887665555543
No 90
>PLN00151 potassium transporter; Provisional
Probab=97.42 E-value=0.032 Score=61.38 Aligned_cols=218 Identities=17% Similarity=0.147 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++.+..+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 276 ~Is~~ILv~LF~~Q~~G---T~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~LG 351 (852)
T PLN00151 276 MISVAFLVILFSVQRFG---TSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSALG 351 (852)
T ss_pred hHHHHHHHHHHHHHhcc---chhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEEec
Confidence 45555666666666666 45555666666666666666666665 35545555552 2111 11233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=.-.+|.+..|-..-+.=+.++.=+..-+...-.| ++ ..+||....- +++.+-
T Consensus 352 gVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy~svP------~~~~wP 420 (852)
T PLN00151 352 GCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFFSSVP------SSLFWP 420 (852)
T ss_pred ceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHhCC------chhHHH
Confidence 4567788888643 33334445566555554444444433333333333222 21 2445443332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=-+....-+-|.+|+ +.-+++++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 44444444333333333333334444445679994 244444332 2566655555444444555677888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 501 iAV~~vM~iTT 511 (852)
T PLN00151 501 IAEVGVMMVST 511 (852)
T ss_pred hhhhhhhhHHH
Confidence 77766665543
No 91
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.40 E-value=0.0091 Score=63.48 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
-+|+.++++.+.+=++..+....+..-.......-+. .++++.+++.++........+.++.+.-. ......+..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CchhcchhccC
Confidence 3567788888888777665544443322221111122 25666666665554444444555544422 35666678999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCC-CCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDG-LPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
...+.+......+..+...+.+....++.+...++...+.+. ..++ .........+..+++.++.......|.+...+
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~ 161 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFL-WIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRR 161 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHHHHCTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcch-hhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 988888888888888888888888888888776654321100 0000 00000001122222233444456677777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 039800 210 VNMILTVLHILFIAFV 225 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~ 225 (576)
++.+...+.....+..
T Consensus 162 ~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGM 177 (440)
T ss_dssp HHHCCHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhhe
Confidence 7777666554443333
No 92
>PLN00149 potassium transporter; Provisional
Probab=97.36 E-value=0.072 Score=58.71 Aligned_cols=221 Identities=14% Similarity=0.133 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 200 ~is~~ILv~LF~~Q~~G---T~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYG---THRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeec
Confidence 35555555566666666 55666667777777777777777665 45555566552 2211 22233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..|-..-+.=+.++.=+..-+...-.|...-+-.+||....- +++.+-
T Consensus 276 gV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP------~~~~~P 347 (779)
T PLN00149 276 GILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVP------EKLRWP 347 (779)
T ss_pred chhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCC------chhHHH
Confidence 4667888999643 33334445666666555444444443333333333223211122345553332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+. .-+++++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 348 ~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 427 (779)
T PLN00149 348 VLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASG 427 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhh
Confidence 444444444433334444443444444556899942 44444332 2566555554444444455677888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 428 iAV~~vM~iTT 438 (779)
T PLN00149 428 LAVITVMLVTT 438 (779)
T ss_pred hhhehHHHHHH
Confidence 77766665543
No 93
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.16 E-value=0.05 Score=59.85 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 216 ~is~~ILv~LF~iQ~~G---T~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 291 (779)
T PLN00150 216 IISCVILVILFSLQRFG---THKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLG 291 (779)
T ss_pred hhHHHHHHHHHHHHhcc---chhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEec
Confidence 45555566666666666 45666667777777777777777665 35545555552 2221 11233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..|-..-+.=+.++.=+..-+...-.| + +..+||....- +++.+-
T Consensus 292 ~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~iP------~~~~~P 360 (779)
T PLN00150 292 GIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRSLP------KPIYWP 360 (779)
T ss_pred ceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhCC------chhHHH
Confidence 4567788888643 33334445566665554444444332233333332222 1 12445543332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCCC----CchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKTS----TPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ +.-+.+++.+ .|..-.+++..+..+...+.+.+.+.+...
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 44444444443333444444344444455689994 2444443332 566555544444444445577888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 441 iAV~~vM~iTT 451 (779)
T PLN00150 441 IAVVGVMIITT 451 (779)
T ss_pred hheehhhHHHH
Confidence 77766665543
No 94
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=96.91 E-value=0.29 Score=52.78 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC---------chhHHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFPY---------GAKGVFNGAAM 254 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~~---------g~~~~~~~~~~ 254 (576)
.+++++++....+.-+| .+++...++.+.++-++.+.+.|+.+ +++-+..++|. +..+ +..+..
T Consensus 145 pit~~ILv~LF~iQ~~G---T~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG~ 220 (622)
T PRK10745 145 PLSIIVLTLLFMIQKHG---TGMVGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALGA 220 (622)
T ss_pred HHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEecc
Confidence 45555555555666666 55556667777777666666667665 44444444442 2221 112334
Q ss_pred HHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHH
Q 039800 255 VYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 255 ~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
++.+.+|-|+. +|+-=+-.+|.+.++-..-+.=+.++.=+..-+.....| + ...+||....- +|..+-+
T Consensus 221 V~L~vTGaEAL--YADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~~P------~~~~~p~ 289 (622)
T PRK10745 221 VVLAITGVEAL--YADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLLAP------DWALIPL 289 (622)
T ss_pred eeeeccchHHH--hhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHhCC------hhHHHHH
Confidence 56777888854 333334445666666555444333332222222222222 1 12456554332 4555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (576)
.+.+.++..-+..+.+.++=.+....-+-|.+|+. ..+.+++. | .|..-.+++..+..+...+.+.+.+.+...+
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 45544444433334444444444455567899952 44444332 2 5655544444444444445677778887777
Q ss_pred HHHHHHHHHHHH
Q 039800 410 GTLFVFYMVANA 421 (576)
Q Consensus 410 ~~~~~~~~~~~~ 421 (576)
+......++.+.
T Consensus 370 AVt~tM~iTT~L 381 (622)
T PRK10745 370 AVTGTMVLTSIL 381 (622)
T ss_pred hheeHhHHHHHH
Confidence 766666554443
No 95
>PRK09950 putative transporter; Provisional
Probab=96.77 E-value=1 Score=48.10 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|.|+.+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 567999999999999888888765
No 96
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.69 E-value=0.085 Score=57.64 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCC---------CchhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFP---------YGAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~---------~g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...++.+.++-++.+.+.|+.. +++-+..++| ++..+ +..+.
T Consensus 170 ~it~~ILv~LF~iQ~~G---T~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~LG 245 (688)
T TIGR00794 170 PISCIILVLLFLIQRFG---TAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSLG 245 (688)
T ss_pred hHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeecc
Confidence 45555566666666666 45555566666666666666666655 4444444544 22222 22344
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..+-..-+.-+.++.=+..-+....-| ++ ..+||....- +|..+-
T Consensus 246 ~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~~--~~NpFf~~~P------~~~~~p 314 (688)
T TIGR00794 246 GVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-EA--IKNPFFLSIP------DWALWP 314 (688)
T ss_pred chhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-ch--hcCcHHHhCc------hHHHHH
Confidence 4667888988643 33334445666665554444443332223333333222 21 2456553332 455555
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ ..-+.+++. | .|..-.+++..+..+...+.+.+.+.+...
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 55555555444444444444444455556789995 244444332 2 566655555444445555677888888888
Q ss_pred HHHHHHHHHHHHH
Q 039800 409 IGTLFVFYMVANA 421 (576)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (576)
++.....+++.+.
T Consensus 395 iaVt~tM~iTT~L 407 (688)
T TIGR00794 395 IAVTGTFLVTTCL 407 (688)
T ss_pred hhhhhhhHHHHHH
Confidence 7777666655443
No 97
>PLN00148 potassium transporter; Provisional
Probab=96.35 E-value=0.24 Score=54.72 Aligned_cols=217 Identities=14% Similarity=0.156 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 199 ~is~~ILv~LF~vQ~~G---T~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 274 (785)
T PLN00148 199 LLACVILVGLFALQHCG---THRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLG 274 (785)
T ss_pred hHHHHHHHHHHHHhccc---cHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeec
Confidence 45555555566666666 45566667777777776666666665 45555555552 2222 12233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+.++-..-+.=+.++.=+..-+...-.| ++ ..+||....- ++..+-
T Consensus 275 gV~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~~--~~npFf~~iP------~~~~~P 343 (785)
T PLN00148 275 GILLSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-PS--IPNSFYDSIP------DPVFWP 343 (785)
T ss_pred chheeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHhCC------chhHHH
Confidence 4567888999643 33334445666666554444444433333333333222 21 2455553332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ +.-+.+++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 44444444443333434333344444455689994 244444333 2566655555544445555667778888877
Q ss_pred HHHHHHHHHH
Q 039800 409 IGTLFVFYMV 418 (576)
Q Consensus 409 ~~~~~~~~~~ 418 (576)
++.....+++
T Consensus 424 iAV~~vM~iT 433 (785)
T PLN00148 424 LACMTVMFIT 433 (785)
T ss_pred hheeeHHHHH
Confidence 7766655544
No 98
>PRK09928 choline transport protein BetT; Provisional
Probab=96.34 E-value=2.2 Score=46.91 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=19.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|+|+.+
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 456888888989888888877654
No 99
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.23 E-value=1.9 Score=44.87 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=144.0
Q ss_pred HHHHHHHhhhcCcCCCchhHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCC
Q 039800 104 SAFCYTEFAVDMPVAGGAFSYLR-VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGF 182 (576)
Q Consensus 104 ~a~~~~el~~~~p~~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (576)
..+..+|--+++-+- ..-++.. |.-.+..-.+++..-++...........+.+..+..+++.+..-
T Consensus 90 ~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~v------------ 156 (529)
T COG4147 90 LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHV------------ 156 (529)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcee------------
Confidence 455566666665332 2444444 44445666666666666666666777777777888777743211
Q ss_pred chhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCC-------C------CCCCCch-
Q 039800 183 NEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNP-------S------GFFPYGA- 245 (576)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~-------~------~~~~~g~- 245 (576)
.+.++.++....+.+-|+|...+.|.+=..+.+...++..+....+ ++... . ...+.|.
T Consensus 157 ----gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~ 232 (529)
T COG4147 157 ----GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLL 232 (529)
T ss_pred ----ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCc
Confidence 2334444555566678888888888777666666655555444443 11110 1 1111121
Q ss_pred -hHHHHHHHHHHHHHhhhhhHhhhhhhh---cCcCCchhhHHHHHHHHHHHHHHHHHHHHHh----cc--cCC-------
Q 039800 246 -KGVFNGAAMVYLSYIGYDAVSTMAEEV---KNPVKDIPIGVSGSVIIVTVLYCLMAASMSM----LM--PYD------- 308 (576)
Q Consensus 246 -~~~~~~~~~~~~~f~G~e~~~~~~~E~---k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~----~~--~~~------- 308 (576)
...+..+...+--..|.-...|.--.. .+ .|+.+|...++...+.++|+.....-.+ .. |..
T Consensus 233 ~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~ 311 (529)
T COG4147 233 YKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAK 311 (529)
T ss_pred ccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhc
Confidence 223333333344445666555543221 22 2567788899999999999876654221 11 111
Q ss_pred -----cCCC-----C-chHHHhhccCCCC-hhHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhcCCCchhhhh
Q 039800 309 -----MIDA-----E-APFSGAFSGKSDG-WKWVSNVIGVGASFGILTSLLVAMLGQ----ARYMCVIGRSSVVPAWFAR 372 (576)
Q Consensus 309 -----~~~~-----~-~p~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~a~a~dg~lP~~~~~ 372 (576)
+.+. . +........ .++ ++|+..+++...+.+.+++.-+..+.. ||=+|.+--|+..+ +
T Consensus 312 w~~~~D~~~~gi~~~~n~a~vlaa~-~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~as----e 386 (529)
T COG4147 312 WIKTGDANGDGIGGWTNMAAVLAAP-AIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGAT----E 386 (529)
T ss_pred ccccccccccccccccchHHHhhhH-HhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCC----c
Confidence 1110 1 111222222 555 588888888888888887766665544 44455544443322 2
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 373 VHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 373 ~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
.. +-..-..++....+++..+...
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHheec
Confidence 22 2333344555555666555544
No 100
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=96.04 E-value=2.5 Score=44.59 Aligned_cols=24 Identities=8% Similarity=0.219 Sum_probs=18.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++..+.+.|.++.-+|.|+.+
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 456888888888888888877654
No 101
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.79 E-value=2.1 Score=44.57 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=26.1
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhh
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRL 84 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~ 84 (576)
..++-+|..++++.+..=.+..++.+.+...+..+..
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~l 84 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALEL 84 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhc
Confidence 3344567899999988877777777777666655543
No 102
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=95.79 E-value=3.4 Score=44.17 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=20.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVT 77 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~ 77 (576)
|.+++.++.+.|.++.-+|+|+.+.
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 6679999999999998888887653
No 103
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=95.41 E-value=1.4 Score=46.68 Aligned_cols=338 Identities=15% Similarity=0.139 Sum_probs=149.8
Q ss_pred HHHHHhhhh---hhhhHHhchHHhhhhccch----HHHHHH--HHHHHHHHHHHHHHHHhhhcC--cCCCchhHHHH---
Q 039800 61 LVCFGIGGM---VGAGVFVTTGRASRLNAGP----AIVISY--AIAGLCALLSAFCYTEFAVDM--PVAGGAFSYLR--- 126 (576)
Q Consensus 61 ~~~~~~~~~---ig~gi~~~~~~~~~~~~G~----~~~~~~--li~~l~~~~~a~~~~el~~~~--p~~Gg~y~~~~--- 126 (576)
++.-++|.+ ||+..............|. ..+++. ++-+-+.+.+..-|.-+.-+- ...||......
T Consensus 18 l~lgAiGVVyGDIGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGGilsL~aL~~ 97 (627)
T COG3158 18 LTLGAIGVVYGDIGTSPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALAR 97 (627)
T ss_pred HhhheeeeEeccCCCChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCchhhhHHHHHH
Confidence 344444444 6777776666665553441 122221 222223333344444444443 36678776653
Q ss_pred HHhchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 127 VTFGEFAAFLT------GSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 127 ~~~g~~~g~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
+..+|...++. +-.+.-.-+++.+....++.+-+...-+... .+ +..++.++++....+.
T Consensus 98 ~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~-~~-------------Vvpitl~IL~~LF~iQ 163 (627)
T COG3158 98 RAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD-PY-------------VVPITLIILVLLFLIQ 163 (627)
T ss_pred hhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCcccc-Cc-------------cHHHHHHHHHHHHHHh
Confidence 44443332322 2222222334444444444333332221111 11 2245556666666666
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC---------chhHHHHHHHHHHHHHhhhhhHhhh
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFPY---------GAKGVFNGAAMVYLSYIGYDAVSTM 268 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~~---------g~~~~~~~~~~~~~~f~G~e~~~~~ 268 (576)
..|.. ++..+++.+.++-.+.+...|+.+ +++-...++|. ++.|++ ....++.+.+|-|+.-
T Consensus 164 ~~GT~---~Vg~~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vLGaVfLavTGaEALY-- 237 (627)
T COG3158 164 RFGTG---RVGKLFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VLGAVFLAVTGAEALY-- 237 (627)
T ss_pred cccch---hhhhhhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-EeeeeeeeeccHHHHH--
Confidence 66654 455557777777777777777776 55544445442 222211 1122445667777542
Q ss_pred hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhccc-CCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 269 AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMP-YDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 269 ~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
++-=+--+|++.+|=...+.= .++.++.=.+..= .+.-...+|+...+- .|...-+.+.+..+..-+..
T Consensus 238 ADmGHfGr~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~~~P------~~aliP~viLAT~ATVIASQ 307 (627)
T COG3158 238 ADMGHFGRKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFLLAP------DWALIPLVILATAATVIASQ 307 (627)
T ss_pred hhccccCCccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHHhCh------hhHHHHHHHHHHHHHHHHHH
Confidence 222233345554444332221 2222221111000 000112345443333 33333222222222221222
Q ss_pred HHHhhHHHHHHHHhhcCCCchh-hhhhcCC-CC---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-
Q 039800 348 VAMLGQARYMCVIGRSSVVPAW-FARVHPK-TS---TPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANA- 421 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 421 (576)
+.+.++=-+....-|-|.+|+. ..+.+++ .| .|..-.++...+..++..+.+-+.+.....++.-....++.+.
T Consensus 308 AvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~ 387 (627)
T COG3158 308 AVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILL 387 (627)
T ss_pred HHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHH
Confidence 2222222222333456899943 4444433 22 5766655555555555555666777776666555555444433
Q ss_pred HHHHhhc
Q 039800 422 VIYRRYV 428 (576)
Q Consensus 422 ~~~~r~~ 428 (576)
..+.|++
T Consensus 388 ~~~~~~~ 394 (627)
T COG3158 388 TVVMRKK 394 (627)
T ss_pred HHHHHHh
Confidence 3344443
No 104
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.38 E-value=3.5 Score=41.52 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhcCc------CCCchhHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 92 ISYAIAGLCALL-SAFCYTEFAVDMP------VAGGAFSYLRVT-FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTA 163 (576)
Q Consensus 92 ~~~li~~l~~~~-~a~~~~el~~~~p------~~Gg~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (576)
++|++-+.+..+ .-+++.-+++++. .+=...++.+.. =+++.-++++....+.+...+.+...+.+..+...
T Consensus 72 lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~ 151 (473)
T COG4145 72 LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETA 151 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456555555555 3344555555443 122355555443 56788999999999999999999998999999888
Q ss_pred hCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-----------
Q 039800 164 IGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------- 232 (576)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----------- 232 (576)
.+.+-..- ..+.+.. .......-|-|.......+-+.+.++..+++.+..+..
T Consensus 152 ~gidY~tg-------------L~ifa~~---V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl 215 (473)
T COG4145 152 LGIDYTTG-------------LLIFAVS---VAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETL 215 (473)
T ss_pred HCCCchhh-------------HHHHHHH---HHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 77543211 0011111 12223345666655555444444444443333332221
Q ss_pred ---CCCCCCCCCCCc--hhHHHHHH-HHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh--
Q 039800 233 ---DPKNPSGFFPYG--AKGVFNGA-AMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM-- 303 (576)
Q Consensus 233 ---~~~~~~~~~~~g--~~~~~~~~-~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~-- 303 (576)
|++-..|...++ ...+..++ ..+.+.-.|.-....-.-..|| +|.+.++|+++.+++.++-+.+-.+ ..+
T Consensus 216 ~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~gra 294 (473)
T COG4145 216 TTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRA 294 (473)
T ss_pred HhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhh
Confidence 222222222222 11222222 1122333343333333344577 5789999999888877765444332 222
Q ss_pred cccCCcCCCCchHHH-hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 304 LMPYDMIDAEAPFSG-AFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 304 ~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
..| |--..|.-.+. +.+ .+. |....+....-+.+.+++.++.+...|-.
T Consensus 295 ViP-dlt~~D~Vip~lalk--vlp-p~~agifl~apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 295 VIP-DLTVVDLVIPTLALK--VLP-PFAAGIFLAAPMAAIMSTINSQLLQSSST 344 (473)
T ss_pred hcC-CCCccchhHHHHHHH--hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 21122222222 233 443 55666666667777888888887766654
No 105
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=94.97 E-value=6 Score=42.02 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC-CCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHH-
Q 039800 330 VSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSS-VVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLV- 407 (576)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~- 407 (576)
+..+..+..++....-..+..-+++=++-.++..| .-|+.+-|+- +++ +++++...+.+.+.++.+-+.+
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v-~~~~ia~~lL~~ggl~aLqt~~i 474 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGV-LIGLIAAVLLLIGGLEALQTAAI 474 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444444444455566677777887777665 3343333332 333 3444444455555544444443
Q ss_pred --HHHHHHHHHHHHHHHHHH
Q 039800 408 --SIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~ 425 (576)
..-+.+..++.+.++++-
T Consensus 475 i~alPF~~vll~~~~sl~k~ 494 (537)
T COG1292 475 ITALPFSLVLLVMMFSLIKD 494 (537)
T ss_pred HHHccHHHHHHHHHHHHHHH
Confidence 333344445556666653
No 106
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.78 E-value=7.6 Score=42.24 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=73.6
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC----------CCCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHhhh
Q 039800 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWKD----------PKNPSGFFPYGAKGVFNGAAMVYLSY-IGYDAVSTM 268 (576)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~f-~G~e~~~~~ 268 (576)
...|+|..+|+.......-.+.++++.+-++..+ ..+++.+.+ ..-+..+...++|+. .|+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEEE
Confidence 4568888888776666544454444444444320 011222211 233566777888888 588888888
Q ss_pred hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcc---------cCCcCCCCc------hHHHhhccCCCChhHHHHH
Q 039800 269 AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM---------PYDMIDAEA------PFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 269 ~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~---------~~~~~~~~~------p~~~~~~~~~~g~~~~~~~ 333 (576)
+.-.|+ +.|++|.............++..+++.... +.++..++. .+++++.+ .-+++....+
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~-~p~~~~~~~l 350 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQ-MPGGRFWAIL 350 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTT-STTHHHHHHH
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHc-CCCCcChHHH
Confidence 888777 567888666655555544433322221111 112222222 35567774 4344555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVA 349 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (576)
...+.+++.+++..+.
T Consensus 351 FFl~l~~agl~S~i~~ 366 (523)
T PF00209_consen 351 FFLMLFLAGLTSQISM 366 (523)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCc
Confidence 5555555555554443
No 107
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=91.93 E-value=0.64 Score=45.91 Aligned_cols=229 Identities=11% Similarity=0.061 Sum_probs=125.0
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcC-cCCCc-------hh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDM-PVAGG-------AF 122 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~-p~~Gg-------~y 122 (576)
+-+.+++-++.-.-.-..+=|.=+...| ....- +|-..+.+.+..+.++..++-.+.| +.+ |...| .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP-~Avlh-GGyw~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLP-IAVLH-GGYWSIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccc-eeeeE-cchhHHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhH
Confidence 3345688888766555544343332222 22222 5555665555555555443333322 111 12122 23
Q ss_pred HHHHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CcccccccCCCCCCCchhhHHHHHHHHHHH
Q 039800 123 SYLRVT-FGEFAA-FLTGSNLILEYVMSNAAVARGFASYFGTAIGVP---TAKWRLKVDGLPDGFNEIDVLAVAVVLVIT 197 (576)
Q Consensus 123 ~~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (576)
.-..+. ++|.+| ..+....++....++..+....++.+..-++.. ...|. ++.-+.+.-+.
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm--------------~i~~a~LLpc~ 253 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWM--------------MITSASLLPCS 253 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchh--------------hhhhHHHhhhH
Confidence 333344 666655 555566777778888888877888887766532 22231 22222222222
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 198 FVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
-+...|..+++..+.+..+++.-++++...+.. |+.-..--+.-+...+-..+-+.+|+|+..-....+-+.+|||
T Consensus 254 --FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p 331 (524)
T KOG4303|consen 254 --FLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP 331 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh
Confidence 346779999999999999998877777666654 3321100000011111111223457777777778888999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAAS 300 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~ 300 (576)
.+ .-.-+-++=+...++=.++..+
T Consensus 332 s~-Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 332 SQ-FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred hH-heeeeehHHHHHHHHHHHHHHh
Confidence 63 4556667766666665554443
No 108
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=91.11 E-value=19 Score=36.58 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=57.1
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhHHHHHHhchhH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFSYLRVTFGEFA 133 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~~~~~~~g~~~ 133 (576)
.+.+-++..=+.++.|.|....|-..+. =|+. +.+..++++++.=..- =|..+-....+.| +.-+-+++..||+.
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVH-D~~sl~~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVH-DYGSLMASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHH-HHHHHhhhhcCCCccHHHHHHHHHHHHH
Confidence 4556777788888889998887766543 4654 4443344444433322 2222222233333 67788889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039800 134 AFLTGSNLILEYVMSNAAVA 153 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~ 153 (576)
+.+..+..++.-+...+...
T Consensus 129 ~~lf~~f~~~~lilV~avF~ 148 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFA 148 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877666655555444443
No 109
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=89.93 E-value=10 Score=39.59 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=25.4
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
+|.....-|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 74 lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 74 LASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred HhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 33333333556666656789999999988888766654
No 110
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=87.65 E-value=16 Score=37.13 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=25.9
Q ss_pred HhhhhhhhcCcCCc----hhhHHHHHHHHHHHHHHHHHHH
Q 039800 265 VSTMAEEVKNPVKD----IPIGVSGSVIIVTVLYCLMAAS 300 (576)
Q Consensus 265 ~~~~~~E~k~p~r~----~p~ai~~~~~~~~i~y~~~~~~ 300 (576)
....++++.++++| .|+|+..+++.+.-.-.+...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777666 8999999988887765555544
No 111
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=85.58 E-value=19 Score=39.03 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred CchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHH-H
Q 039800 119 GGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVI-T 197 (576)
Q Consensus 119 Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 197 (576)
...|.|.+..|++..-.+....+.+..+...+...+.-+..++...+.+.. ....++..++ .
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~-----------------l~~~~~~~ic~~ 170 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY-----------------LIVVILGLICVF 170 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce-----------------eehHHHHHHHHH
Confidence 368999999999886666666666666666665555555556655543321 1111112222 2
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CC------------CCCC-CCCC-----CchhHHHHHHHHHHH
Q 039800 198 FVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DP------------KNPS-GFFP-----YGAKGVFNGAAMVYL 257 (576)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~------------~~~~-~~~~-----~g~~~~~~~~~~~~~ 257 (576)
.-.+-|.|..-+...+-+.+.+.....+.+.+... +. .++. .+.. +.++.++.+......
T Consensus 171 YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l 250 (585)
T KOG2349|consen 171 YTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWL 250 (585)
T ss_pred HHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHH
Confidence 23344666666555566666666666666655443 10 0111 1211 123336666666666
Q ss_pred HHhhhhhHhhh-hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh------cccCC--cCC-CCchHHHhhccCCCC
Q 039800 258 SYIGYDAVSTM-AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM------LMPYD--MID-AEAPFSGAFSGKSDG 326 (576)
Q Consensus 258 ~f~G~e~~~~~-~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~------~~~~~--~~~-~~~p~~~~~~~~~~g 326 (576)
.+.|.+....- ---.|+ .|...+++........+...+.... +.. +.|.. ... ++.-++....+ ..|
T Consensus 251 ~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d-~~~ 328 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMD-LMG 328 (585)
T ss_pred HHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHH-hcC
Confidence 66677755421 111122 2344455555444444443333322 111 11111 111 12211211111 222
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 327 -WKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 327 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
-+....++..++..+.++++.+.+.+.|-+.+.
T Consensus 329 ~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 329 HLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 133455666667777777777777777777665
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.42 E-value=1.3 Score=37.39 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 039800 525 VRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++.++..+|.++.|++.|+||
T Consensus 73 v~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555566677776655554
No 113
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=83.28 E-value=21 Score=37.09 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 341 GILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 341 ~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
+.+++.....++.|+.+..+--|+.-||.| .| ..+++++++.+++.+.
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~f--------m~-~gLilsai~nil~Gfs 114 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYF--------MA-FGLILSAIVNILFGFS 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCcee--------eh-HHHHHHHHHHHHHhhh
Confidence 455566677899999999988887644333 32 2356666666665544
No 114
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=78.94 E-value=86 Score=32.61 Aligned_cols=43 Identities=12% Similarity=-0.085 Sum_probs=29.4
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039800 316 FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVI 360 (576)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 360 (576)
..+.++. ..| ++...++.++.+.+..++..+..++..=++..+
T Consensus 282 ~~~~L~p-~~G-~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGC-LFS-PAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHH-Hhh-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455554 455 677888888888888888888777555444443
No 115
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=73.46 E-value=74 Score=29.12 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=25.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 039800 376 KTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFV 414 (576)
Q Consensus 376 ~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (576)
..+.|+....+.+++.+++..+..++...+.......+-
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG 52 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVG 52 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356788888888888887777655555555544444443
No 116
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=73.01 E-value=0.95 Score=43.21 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhcCCCCCchhHHHHHHH
Q 039800 372 RVHPKTSTPVNASAFLGI 389 (576)
Q Consensus 372 ~~~~~~~~P~~ai~~~~~ 389 (576)
+.+||--.|...+.+...
T Consensus 13 ~r~pr~p~~~a~l~~~~l 30 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLL 30 (381)
T ss_dssp ------------------
T ss_pred CCCCCCCCcchhHHHHHH
Confidence 456655556555555443
No 117
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=71.48 E-value=1.6e+02 Score=31.97 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred HHHHhccCCCCCCcccccccc----HHHHHHHHHHHHHHh
Q 039800 482 IFHCVVPQAKKPEFWGVPLMP----WIPCISIFLNIFLLG 517 (576)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 517 (576)
.+..|.++++.+++||.|..+ ....++++.+++.+.
T Consensus 382 ~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 382 YFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred HHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHh
Confidence 345566677778889998654 455666666665554
No 118
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=69.80 E-value=98 Score=31.79 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=24.3
Q ss_pred ccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 039800 497 GVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVL 536 (576)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 536 (576)
.....+..|++++++...++...-...-+.....++.|+.
T Consensus 285 as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 285 LAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 3456777899999988777766533333444444444543
No 119
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=68.91 E-value=1.1e+02 Score=32.09 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=23.3
Q ss_pred chhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 367 PAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 367 P~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
-|.+.++-+.-++|..|+++..+++.+.+++
T Consensus 78 ~r~l~~la~~p~t~~~ai~~v~~vs~~~s~i 108 (438)
T TIGR00366 78 YKLLKTIASLPKTPKQAVALVTFIGSIACWI 108 (438)
T ss_pred HHHHHHHHhCCCCCCceeehHHHHHHHHHHH
Confidence 3566666666789999999988888766554
No 120
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=63.70 E-value=1.5e+02 Score=28.97 Aligned_cols=101 Identities=13% Similarity=-0.014 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcH-----HHHHH
Q 039800 331 SNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDL-----TVLLN 405 (576)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~-----~~l~~ 405 (576)
..++....++..+-........+.|.+-...++ .+.+.+.+ +.+.|.+.++...+...+....... +.+..
T Consensus 158 ~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~---~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~ 233 (290)
T PF09991_consen 158 KRLFPALLIISALLMSLINYYLARRILRRLGIP---IPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGL 233 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 333444444443333334444455554333333 22333344 5778988887665544333332211 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 406 LVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
=........|.+..++++...-++++.++.
T Consensus 234 Nl~~v~~~l~~~qGla~~~~~~~~~~~~~~ 263 (290)
T PF09991_consen 234 NLLIVLSFLFFIQGLAVIHFFLKRRKMSKF 263 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 122333445666667766544444444343
No 121
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=62.27 E-value=1e+02 Score=26.56 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=10.7
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 039800 520 DGPSYVRFGFFSALAVLVYL 539 (576)
Q Consensus 520 ~~~~~~~~~~~~~i~~~~y~ 539 (576)
+...++.....+..|+++-.
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566655443
No 122
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=62.24 E-value=2.6e+02 Score=31.14 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=35.9
Q ss_pred hhHHHHHHHHH-HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 185 IDVLAVAVVLV-ITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
....++.+.++ +.++.++|+|..+|+..+...+-.++++++.+-++..
T Consensus 215 ~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL 263 (629)
T KOG3660|consen 215 PLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTL 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccC
Confidence 33445555554 4556688999999999999988888888888877775
No 123
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=56.63 E-value=3e+02 Score=30.14 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 186 DVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
......+++....+|+.|+|.....+......|++..+.+++.+++.
T Consensus 156 ~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi 202 (554)
T KOG1286|consen 156 GGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI 202 (554)
T ss_pred CccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee
Confidence 35566788888999999999999999999999999999999998887
No 124
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=54.63 E-value=99 Score=33.10 Aligned_cols=31 Identities=3% Similarity=-0.149 Sum_probs=16.4
Q ss_pred hhhhcCcCCchhhHHHHHHHHHHHHHHHHHH
Q 039800 269 AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA 299 (576)
Q Consensus 269 ~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~ 299 (576)
++|.++.+|+=-|.+....+...+..+=.++
T Consensus 22 ~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI 52 (488)
T KOG2325|consen 22 SLSPLDERKTNWRSIYLALLNSFLVAVQFSI 52 (488)
T ss_pred ccccccccCCchHhHHHHHHHHHHHhhhheE
Confidence 3444444555556666666555554444443
No 125
>PTZ00206 amino acid transporter; Provisional
Probab=51.76 E-value=1.8e+02 Score=31.10 Aligned_cols=56 Identities=11% Similarity=0.234 Sum_probs=42.0
Q ss_pred chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhh
Q 039800 314 APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFA 371 (576)
Q Consensus 314 ~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 371 (576)
..+.++.+. ..| +++..++.+..++..++...+++...+..+...-++...|+++.
T Consensus 121 ~sY~~la~~-~~G-~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARV-LLG-PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHH-HhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 356667663 445 88899999999999999999999999988877665544455554
No 126
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=50.10 E-value=78 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 039800 525 VRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.+.+..+.+|.++|-.|+|+.
T Consensus 52 FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 52 FILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 345677888999998898876
No 127
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=49.01 E-value=1.5e+02 Score=31.60 Aligned_cols=9 Identities=11% Similarity=-0.145 Sum_probs=5.0
Q ss_pred cCCCCCCCc
Q 039800 429 NLGTTNPQP 437 (576)
Q Consensus 429 ~~~~~~~~~ 437 (576)
+++.+||||
T Consensus 398 ~~~~~~p~~ 406 (478)
T TIGR00913 398 RSLDELPYK 406 (478)
T ss_pred CCcccCCcc
Confidence 445566665
No 128
>PHA03048 IMV membrane protein; Provisional
Probab=48.33 E-value=85 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q 039800 525 VRFGFFSALAVLVYLLYSVHASF 547 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~~~ 547 (576)
.+.+..+.+|+++|-.|+|+.+.
T Consensus 51 FIlgivl~lG~~ifsmy~r~C~~ 73 (93)
T PHA03048 51 FVLGIVMTIGMLIYSMWGRYCTP 73 (93)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC
Confidence 34567778899999889987743
No 129
>PHA02898 virion envelope protein; Provisional
Probab=47.88 E-value=64 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q 039800 525 VRFGFFSALAVLVYLLYSVHASFD 548 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~~~~ 548 (576)
.+.+..+.+|+++|-.|+|+.+..
T Consensus 52 FIlgivl~lG~~ifs~y~r~C~~~ 75 (92)
T PHA02898 52 FILAIILILGIIFFKGYNMFCGGN 75 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCC
Confidence 345677788999998898876543
No 130
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.71 E-value=6e+02 Score=30.95 Aligned_cols=7 Identities=0% Similarity=-0.315 Sum_probs=3.1
Q ss_pred CCCchhh
Q 039800 460 PPCKSKA 466 (576)
Q Consensus 460 ~~~~~~~ 466 (576)
.+|..|.
T Consensus 142 gGGIIG~ 148 (1355)
T PRK10263 142 SGGVIGS 148 (1355)
T ss_pred ccchHHH
Confidence 3444444
No 131
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=45.94 E-value=3.9e+02 Score=28.31 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHH
Q 039800 338 ASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFT 391 (576)
Q Consensus 338 ~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~ 391 (576)
.++-.+++..+.+..-|.-...++++ +-|.-.+++.|+.-.+...+++
T Consensus 62 givI~lG~~iG~~l~~SGaa~~IA~~------l~~~~G~k~~~~A~~i~g~iv~ 109 (441)
T PF02447_consen 62 GIVIALGAMIGKLLEESGAAERIANT------LLKKFGEKRAPLALAITGFIVG 109 (441)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHH------HHHHcCCCcccHHHHHHHHHhh
Confidence 33334455555555555555555543 3333324556655544444444
No 132
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.96 E-value=7.2 Score=37.49 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Q 039800 444 LFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQ 489 (576)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (576)
++...+++++.+--++...---.-+++.++++.++++.++..|+|+
T Consensus 30 llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 30 LLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344455554444332222224555666666666666666654
No 133
>PF14150 YesK: YesK-like protein
Probab=41.85 E-value=1.7e+02 Score=22.83 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhh
Q 039800 423 IYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKA 466 (576)
Q Consensus 423 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
...|+|.|+++ +...++....+.+......+.+.. +||-|.
T Consensus 17 ~~lr~r~p~k~-~~~il~~ililis~~~v~~S~f~v--GGweGm 57 (81)
T PF14150_consen 17 VLLRKRFPKKQ-PEIILPLILILISLLTVLISIFLV--GGWEGM 57 (81)
T ss_pred HHHHHhCCCcc-hhHHHHHHHHHHHHHHHHHHHheE--cchhhh
Confidence 34566767766 444455455555555555555544 355554
No 134
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.54 E-value=3.1e+02 Score=25.54 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 039800 473 AIVAIAVLQIFHCVVP 488 (576)
Q Consensus 473 ~~~~~~~~~~~~~~~~ 488 (576)
.++|++......+.|+
T Consensus 157 ~~~w~~~~~~~~~lp~ 172 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPP 172 (206)
T ss_pred HHHHHHHHHHHHHccc
Confidence 3344444333344443
No 135
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=40.25 E-value=45 Score=29.79 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 039800 525 VRFGFFSALAVLVYLL 540 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~ 540 (576)
+++.+...+.++++.+
T Consensus 99 ~Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 99 YVLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 136
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=39.64 E-value=5.3e+02 Score=28.02 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=58.4
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAG-PAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G-~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
.+.+-++..=+.++.|.|..+.|...++ -| +...+..+++++++=..-=-+.-+.+..-+.-+.-+-+++.+|+..|
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq--~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~ 129 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQ--YGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAK 129 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHH--hcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHH
Confidence 4556667777888889999888776654 35 43333244555554332222222222222223577778889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFAS 158 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~ 158 (576)
.+.....++--++..+..+...+.
T Consensus 130 ~~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 130 VFFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765555555555544444433
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.39 E-value=80 Score=23.36 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q 039800 525 VRFGFFSALAVLVYLLYSVHASF 547 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~~~ 547 (576)
+++....+++++.|-+|.|++..
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 44556677888888888777644
No 138
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=34.70 E-value=1.3e+02 Score=29.86 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=14.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcH
Q 039800 376 KTSTPVNASAFLGIFTAAIALFTDL 400 (576)
Q Consensus 376 ~~~~P~~ai~~~~~~~~~~~~~~~~ 400 (576)
|.+.-+.+.++..+....+.-.+.+
T Consensus 27 kwk~~Vpa~v~iy~gamff~t~Glf 51 (384)
T COG5505 27 KWKSAVPAAVIIYAGAMFFTTVGLF 51 (384)
T ss_pred CccchhhHHHHHHHHHHHHhhcccc
Confidence 4444445666666666665555555
No 139
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=34.40 E-value=6.6e+02 Score=27.61 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC--CCCCCCC-----chhHHHHHHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKN--PSGFFPY-----GAKGVFNGAAMVYLS 258 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~--~~~~~~~-----g~~~~~~~~~~~~~~ 258 (576)
+..+++.+++.+..+.|.|.++|+..+.+..-.+.+.++.+-+... +..+ ..-..|+ ....+..+...++++
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffs 335 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFS 335 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhh
Confidence 3344444455667788999999987666665544444444444432 1111 1011111 134456666667666
Q ss_pred H-hhhhhHhhhhhhhcCcCCchhhHHHHHH
Q 039800 259 Y-IGYDAVSTMAEEVKNPVKDIPIGVSGSV 287 (576)
Q Consensus 259 f-~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 287 (576)
. .|+.....++.-.|.-.+-..-|++.+.
T Consensus 336 lg~GfG~L~AfaSyn~F~NNc~rDAll~S~ 365 (629)
T KOG3659|consen 336 LGPGFGVLIAFASYNKFHNNCYRDALLTSI 365 (629)
T ss_pred cCccchhhhhhhhhcccccchhhhhHHHHH
Confidence 5 6888888887776654434444444443
No 140
>PHA03049 IMV membrane protein; Provisional
Probab=33.32 E-value=93 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 039800 525 VRFGFFSALAVLVYLLYSVHAS 546 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~~ 546 (576)
+......+++++.|-+|.|++.
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4455566788888888877653
No 141
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=32.44 E-value=6.2e+02 Score=26.67 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhc-cCCCC--CCccccccccHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHHHHHhhhc
Q 039800 473 AIVAIAVLQIFHCVV-PQAKK--PEFWGVPLMPWIPCISIFLNIFLLGSL-----DGPSYVRFGFFSALAVLVYLLYSVH 544 (576)
Q Consensus 473 ~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~~ 544 (576)
.+.|.+.......++ +.++. +.+++.+.+|+.++++++.+.+.+..+ ...+......+.++..++|+.++||
T Consensus 372 ~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~ 451 (452)
T TIGR01773 372 LLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLVFARR 451 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555433333333 32332 334677778999988877776665543 2233444455556666667665554
No 142
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.25 E-value=2.9e+02 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=13.1
Q ss_pred CCccccChHHHHHHHhhhhhhhhHH
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVF 75 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~ 75 (576)
..-|.++....+...+...+-.|.+
T Consensus 37 ~~~~~l~~~g~IG~~~v~pil~G~~ 61 (100)
T TIGR02230 37 SIWEGLGMFGLIGWSVAIPTLLGVA 61 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555544434444
No 143
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=30.64 E-value=70 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 039800 523 SYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 523 ~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
+.+..+...++++++|..|+|..
T Consensus 6 a~~~~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 6 ALLTVIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445555666777777777764
No 144
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=30.36 E-value=4.8e+02 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=27.8
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 039800 491 KKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVY 538 (576)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y 538 (576)
..++.++...+-...+.++...--+...++. ....+++.|.+.|
T Consensus 140 ~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~----~~~~~l~~GGv~Y 183 (226)
T COG1272 140 KRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL----IGLVLLALGGVLY 183 (226)
T ss_pred CcCceeeehhhHHHHHHHHHHHHHHHHhCch----HHHHHHHHHhHHh
Confidence 4556666666766777777665555555555 4455666677776
No 145
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=28.39 E-value=7.6e+02 Score=26.45 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhc
Q 039800 343 LTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 343 ~~~~~~~~~~~sR~l~a~a~d 363 (576)
+....+...+.+|..++.+|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~r~ 342 (496)
T PRK15238 322 LSMFLAYTGAFFTLSYSPLKQ 342 (496)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 345556677788888998886
No 146
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=28.27 E-value=5.5e+02 Score=24.79 Aligned_cols=11 Identities=0% Similarity=-0.327 Sum_probs=4.9
Q ss_pred HHHHHHhhccC
Q 039800 420 NAVIYRRYVNL 430 (576)
Q Consensus 420 ~~~~~~r~~~~ 430 (576)
+.++...|..|
T Consensus 52 i~~~~~~k~lP 62 (249)
T PF10225_consen 52 ILLFQLSKLLP 62 (249)
T ss_pred HHHHHHHHHcc
Confidence 33334444545
No 147
>PF15102 TMEM154: TMEM154 protein family
Probab=28.09 E-value=67 Score=27.97 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.1
Q ss_pred Hhhhccc
Q 039800 540 LYSVHAS 546 (576)
Q Consensus 540 ~~~~~~~ 546 (576)
.|+||+.
T Consensus 81 ~~kRkr~ 87 (146)
T PF15102_consen 81 YYKRKRT 87 (146)
T ss_pred EEeeccc
Confidence 3444443
No 148
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=28.02 E-value=7.5e+02 Score=26.24 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHHHHHHHHh
Q 039800 378 STPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 378 ~~P~~ai~~~~~~~~~~~~~ 397 (576)
+.|.+..++..+++.++.++
T Consensus 83 k~pk~i~llap~vt~l~afl 102 (443)
T PRK12489 83 RNPKYITILAPFVTYTLTFL 102 (443)
T ss_pred cChhHHHHHHHHHHHHHHHh
Confidence 45667766555555554443
No 149
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=27.72 E-value=7.6e+02 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=21.4
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 363 SSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 363 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
|+.+=+.+.|.=+|-+.|+.-+-...+++.++.+.
T Consensus 96 ~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~ 130 (455)
T PRK09804 96 SRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQF 130 (455)
T ss_pred cHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 33333334444335566998888888887776654
No 150
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.45 E-value=3e+02 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=20.8
Q ss_pred HHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhc
Q 039800 418 VANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWH 457 (576)
Q Consensus 418 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (576)
+.+-++.+|++..++++...+++.+.+...+..-+-..+.
T Consensus 10 i~lrl~~yrr~garhr~~~s~lA~lli~~~~~~~i~~l~g 49 (83)
T PF05449_consen 10 IALRLMFYRRNGARHRPWISWLAYLLIVAYGSVPIRILFG 49 (83)
T ss_pred HHHHHheeecCCCccCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444433333334467777776666665555553
No 151
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=26.80 E-value=96 Score=30.46 Aligned_cols=26 Identities=4% Similarity=-0.107 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 520 DGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 520 ~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
+...|+++++.++|+.++|..|+|++
T Consensus 4 ~l~~~livig~i~i~~il~~~~~r~r 29 (293)
T PRK00269 4 GLREWLIVIGIIVIAGILFDGWRRMR 29 (293)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467777777788766666676654
No 152
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=25.47 E-value=8.3e+02 Score=25.92 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=21.6
Q ss_pred HHhccCCCCCCccccccccH----HHHHHHHHHHHHHhc
Q 039800 484 HCVVPQAKKPEFWGVPLMPW----IPCISIFLNIFLLGS 518 (576)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 518 (576)
.+|.++++.+++||.|..++ ...++.+.+.+.+.-
T Consensus 381 ~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 381 YLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred HHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 45556667788899987554 445555555555443
No 153
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.10 E-value=2.1e+02 Score=20.97 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhccccccccc
Q 039800 528 GFFSALAVLVYLLYSVHASFDAEED 552 (576)
Q Consensus 528 ~~~~~i~~~~y~~~~~~~~~~~~~~ 552 (576)
...+++++++|..|+|.+.-..++.
T Consensus 11 v~v~Ivclliya~YrR~kci~sP~~ 35 (70)
T PHA02902 11 VIVIIFCLLIYAAYKRYKCIPSPDD 35 (70)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3445667778877877643343333
No 154
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.08 E-value=42 Score=22.14 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhhc
Q 039800 531 SALAVLVYLLYSVH 544 (576)
Q Consensus 531 ~~i~~~~y~~~~~~ 544 (576)
+++++..|++|+|+
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 34444454445443
No 155
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=25.08 E-value=6.9e+02 Score=24.85 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHHHHHHh
Q 039800 501 MPWIPCISIFLNIFLLG 517 (576)
Q Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (576)
|-+++.+|++.|.....
T Consensus 127 ml~va~~GL~vN~~~a~ 143 (296)
T COG1230 127 MLVVAIIGLVVNLVSAL 143 (296)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55556666666555444
No 156
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=24.85 E-value=8.4e+02 Score=25.74 Aligned_cols=95 Identities=12% Similarity=0.216 Sum_probs=62.7
Q ss_pred hHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 039800 122 FSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVIC 201 (576)
Q Consensus 122 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (576)
-+.+++.+|+....+.+....++-..+......++++|++..++ .. +++ .+..++.++...+..
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-ki-sY~--------------~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KI-SYK--------------VWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-ChH--------------HHHHHHHHHHHHHHH
Confidence 44567889999999999999998888888999999999999887 22 121 344555566666777
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 202 YSTRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 202 ~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
.|....-++..-.....--..+++++..+.+
T Consensus 328 ~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~ 358 (427)
T PF05525_consen 328 LGLDQIIKISVPILMFIYPVAIVLILLNLFD 358 (427)
T ss_pred hCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7776555554333333223333444444444
No 157
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=24.80 E-value=2.4e+02 Score=30.34 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHH
Q 039800 95 AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGS 139 (576)
Q Consensus 95 li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 139 (576)
.+..++.+..+.+|+..+.++.+..-......+.+....++++-.
T Consensus 301 piI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~ 345 (502)
T PF03806_consen 301 PIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLA 345 (502)
T ss_pred HHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHH
Confidence 344566777899999999999988878888888877766665543
No 158
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=24.22 E-value=3.3e+02 Score=20.86 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=32.9
Q ss_pred hhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 039800 263 DAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM 303 (576)
Q Consensus 263 e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~ 303 (576)
|.-..+-+|++.|=|.+.+.+..+...+..+..++.+.-..
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456779999999999999999999998887777665443
No 159
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=24.00 E-value=4.1e+02 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhccCCCCC
Q 039800 414 VFYMVANAVIYRRYVNLGTTN 434 (576)
Q Consensus 414 ~~~~~~~~~~~~r~~~~~~~~ 434 (576)
...+..++...+|.+..+++.
T Consensus 57 ~~~i~~lal~vRRlhD~G~sg 77 (120)
T PF05656_consen 57 LLFIPSLALTVRRLHDIGRSG 77 (120)
T ss_pred HHHHHHHHHHhhhhhcCCCCC
Confidence 334455566666666555443
No 160
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=23.40 E-value=7.3e+02 Score=24.54 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 039800 465 KAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGV 498 (576)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (576)
.+.-...-.++|+++..++..+-|++-.|..+..
T Consensus 210 ~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~ 243 (286)
T KOG0748|consen 210 ALGYVILMAVLYLLGALFYATRIPERWFPGKFDI 243 (286)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCcccCCCccce
Confidence 3344667888999999999999998766666543
No 161
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=23.14 E-value=2e+02 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=25.5
Q ss_pred hhhhhcCcC-CchhhHHHHHHHHHHHHHHHHHHH
Q 039800 268 MAEEVKNPV-KDIPIGVSGSVIIVTVLYCLMAAS 300 (576)
Q Consensus 268 ~~~E~k~p~-r~~p~ai~~~~~~~~i~y~~~~~~ 300 (576)
-.|-.+||| |..||+++.+.+.+.++-++....
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346778887 789999999998887776665543
No 162
>COG4325 Predicted membrane protein [Function unknown]
Probab=22.29 E-value=7.3e+02 Score=25.61 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 350 ~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
.++..=.-++.+-.+.-|+.+...- ..+|....+.+++.+.+.++.
T Consensus 97 ~fSItvvalqlaSsqfsPRll~~fm--rd~~nqvvLa~FlctFvysl~ 142 (464)
T COG4325 97 VFSITVVALQLASSQFSPRLLRTFL--RDVPNQVVLAIFLCTFVYSLG 142 (464)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHh--hcCchHHHHHHHHHHHHHHHH
Confidence 3344444556777788887766655 467777777777777666654
No 163
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.92 E-value=8.9e+02 Score=25.82 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhc
Q 039800 530 FSALAVLVYLLYSVH 544 (576)
Q Consensus 530 ~~~i~~~~y~~~~~~ 544 (576)
.+++++++ +++.+|
T Consensus 264 ~il~gl~~-~~~~~~ 277 (460)
T PRK13108 264 VFIGAVVY-IILAPK 277 (460)
T ss_pred HHHHHHHH-HHHhhc
Confidence 34445443 355444
No 164
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=21.61 E-value=68 Score=25.48 Aligned_cols=11 Identities=0% Similarity=0.141 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 039800 528 GFFSALAVLVY 538 (576)
Q Consensus 528 ~~~~~i~~~~y 538 (576)
...+++|...|
T Consensus 10 l~lliig~~~~ 20 (92)
T PF13038_consen 10 LILLIIGGFLF 20 (92)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 165
>PF14256 YwiC: YwiC-like protein
Probab=21.40 E-value=5.2e+02 Score=22.08 Aligned_cols=47 Identities=4% Similarity=-0.040 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 039800 384 SAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNL 430 (576)
Q Consensus 384 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 430 (576)
-|.+.++-.++......+........+-++.|+...-.....|.|++
T Consensus 7 AW~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~~ 53 (129)
T PF14256_consen 7 AWAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRRR 53 (129)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555555555544333333333344555566655555555555443
No 166
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.29 E-value=1.9e+02 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=10.7
Q ss_pred CCCCchhHHHHHHHHHHH
Q 039800 376 KTSTPVNASAFLGIFTAA 393 (576)
Q Consensus 376 ~~~~P~~ai~~~~~~~~~ 393 (576)
++..|..+.++.++++.+
T Consensus 60 ~fs~~~i~~Ii~gv~aGv 77 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGV 77 (122)
T ss_dssp SSS-TCHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHH
Confidence 777887666665555543
No 167
>PRK11056 hypothetical protein; Provisional
Probab=21.07 E-value=5e+02 Score=21.78 Aligned_cols=14 Identities=0% Similarity=0.166 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhc
Q 039800 531 SALAVLVYLLYSVH 544 (576)
Q Consensus 531 ~~i~~~~y~~~~~~ 544 (576)
+.+.++.|..++.+
T Consensus 99 l~~~L~~Wi~~kl~ 112 (120)
T PRK11056 99 LSVILVFWIGRKLR 112 (120)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555554444
No 168
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=20.48 E-value=2.6e+02 Score=21.29 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039800 533 LAVLVY 538 (576)
Q Consensus 533 i~~~~y 538 (576)
+.++++
T Consensus 22 L~~~i~ 27 (79)
T PF04277_consen 22 LILVIS 27 (79)
T ss_pred HHHHHH
Confidence 333333
Done!