Query 039800
Match_columns 576
No_of_seqs 206 out of 2459
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 3.2E-52 1.1E-56 442.0 40.9 415 50-545 4-431 (445)
2 3gia_A Uncharacterized protein 100.0 1.4E-49 4.8E-54 421.5 39.3 364 51-431 3-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 2E-48 6.7E-53 420.2 44.1 405 48-491 5-437 (511)
4 2jln_A MHP1; hydantoin, transp 99.2 2.7E-08 9.3E-13 105.5 30.6 205 52-277 23-239 (501)
5 3dh4_A Sodium/glucose cotransp 98.8 1.4E-05 4.7E-10 85.3 36.0 280 53-357 19-348 (530)
6 2xq2_A Sodium/glucose cotransp 98.8 6.2E-05 2.1E-09 81.5 39.9 282 53-357 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.9 0.028 9.6E-07 58.9 32.2 303 57-365 10-371 (519)
8 4ain_A Glycine betaine transpo 94.6 5 0.00017 41.7 24.1 25 52-76 92-116 (539)
9 2wsw_A BCCT family betaine/car 94.1 6.2 0.00021 40.8 30.4 24 53-76 88-111 (509)
10 4djk_A Probable glutamate/gamm 78.1 27 0.00092 36.0 14.0 62 483-545 390-468 (511)
11 3l1l_A Arginine/agmatine antip 56.5 1.3E+02 0.0046 29.9 13.6 50 498-547 381-430 (445)
12 2ks1_B Epidermal growth factor 47.4 18 0.00061 23.5 3.1 14 532-545 26-39 (44)
13 2l2t_A Receptor tyrosine-prote 47.3 18 0.00062 23.5 3.1 14 532-545 25-38 (44)
14 2jwa_A Receptor tyrosine-prote 22.7 1E+02 0.0035 20.0 3.5 15 531-545 25-39 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=3.2e-52 Score=441.97 Aligned_cols=415 Identities=19% Similarity=0.279 Sum_probs=351.9
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
+++||+++.++.+.+.++.++|+|+|..++.. .. +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 45678999999999999999999999998774 34 68888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||.+|++.+|.+++.+....+.+...++++++..++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV------------LTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH------------HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH------------HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999999998888888888766543211121 2367888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCC-CCCCCCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHH
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNP-SGFFPYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVS 284 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~-~~~~~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~ 284 (576)
++.+.+..+++.++++++.++.+ +++++ .++.+.+ +.++..++...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 99999999999998888877766 44444 2343433 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 285 GSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 285 ~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
.+...++++|++..++.....|++++. .+.|+.++++ ..++++...++.+..+++.+++.++.+++.+|++++||||
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR--MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH--HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999989988774 4678999888 4445888899999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 039800 364 SVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQ 436 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 436 (576)
|.+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+| ++|
T Consensus 308 g~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-- 383 (445)
T 3l1l_A 308 GLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA-- 383 (445)
T ss_dssp TSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG--
T ss_pred CCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc--
Confidence 99999999999 6799999999999987766653 357899999999999999999999999887755 211
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 039800 437 PTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLL 516 (576)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (576)
.|..++.+.++.+.+.+.+
T Consensus 384 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 384 -------------------------------------------------------------RPAYLAVTTIAFLYCIWAV 402 (445)
T ss_dssp -------------------------------------------------------------CTTTHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------cchhHHHHHHHHHHHHHHH
Confidence 1345678888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 517 GSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
...++.......+++++|+++|+++++|+
T Consensus 403 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 403 VGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888888899999999997776655
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.4e-49 Score=421.50 Aligned_cols=364 Identities=21% Similarity=0.371 Sum_probs=323.9
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
+.||+++.++.++++++.++|+|++..++..... +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3578999999999999999999999999887766 888999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 131 EF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 131 ~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|. .+...+|.++++|....+.+...+++++...++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFN------------IAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH------------HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 96 3555689999999999999999999999988765433322 2267788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHH
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNPSG-FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSV 287 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~-~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 287 (576)
++.+.+.++++.++++++.++.. +++++.+ +.+.++.+++.+....+|+|.|+|.+++++||+|||+|++||++..+.
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 99999999999998888888776 6666655 556677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcCC--CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 288 IIVTVLYCLMAASMSMLMPYDMID--AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 288 ~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..++++|++..++.....|++++. ++.|+.++++ ...+++...++.+..+++.+++.++.+++.||++++|||||.
T Consensus 230 ~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 307 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAK--PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGE 307 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998888887763 3457788777 444478888999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLG 431 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 431 (576)
+|++|+|+| | ++|.++++++.+++.++.++.+++.+.++.+.+.++.|.+.+++.+++|+++|+
T Consensus 308 lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 308 LPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp CCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999998 4 569999999999998888888999999999999999999999999998888654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2e-48 Score=420.19 Aligned_cols=405 Identities=18% Similarity=0.258 Sum_probs=313.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhh--cCcCCCchhHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAV--DMPVAGGAFSY 124 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~--~~p~~Gg~y~~ 124 (576)
+++++||+++++++++++++.++|. +..+. . ..+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 5677899999999999999999863 32222 2 337888777777777765 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 125 LRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 125 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
+++.+||.+|++++|.+++++....+......+.++..++..+ . ++.+.....+++++++++++++|++|+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~-------~~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWP--A-------LNEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCG--G-------GTSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--c-------cccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999988888888887654211 1 111111133678888889999999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHhhcc----CC----CCCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 205 RDSSVVNMILTVLHILF-IAFVILMGFWK----DP----KNPSGFFPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~-~~~~~i~~~~~----~~----~~~~~~~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
|..++++.+.+.++++. ++++++.++.. ++ .+..++.|+. ..+.+.++...+|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999998886544 44555555432 11 1223333321 123445667789999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCch----HHHhhccCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP----FSGAFSGKSDG--WKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
|+|++||++..++.+++++|++..+++....|+++...+++ +..+++ ..| .++...++.+..+++.+++.++
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS--HVAPEIEWTVRVISALLLLGVLAEIAS 307 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS--SSCSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH--HhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888765443 444555 666 6788899999999999999999
Q ss_pred HHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHH-HHHhhc--------HHHHHHHHHHHHHHHHHHHH
Q 039800 349 AMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAA-IALFTD--------LTVLLNLVSIGTLFVFYMVA 419 (576)
Q Consensus 349 ~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~ 419 (576)
.+++.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.+++|.+.+
T Consensus 308 ~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~ 386 (511)
T 4djk_A 308 WIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLF 386 (511)
T ss_dssp HTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 589999999998544333 333333 78899999999999999999
Q ss_pred HHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 039800 420 NAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAK 491 (576)
Q Consensus 420 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (576)
++++++|+|+++.+|||| .+.++++.+.++++++++.++..++.++|+..+
T Consensus 387 ~~~~~~r~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (511)
T 4djk_A 387 IGYIVLVLKHPDLKRTFN---------------------IPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNI 437 (511)
T ss_dssp HHHHHHHHHCCSCCCSCC---------------------CSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCS
T ss_pred HHHHHHHHhCCCCCCCee---------------------cCCCchHHHHHHHHHHHHHHHHHHeeeeCCccc
Confidence 999999999888888876 223456666788999999999999999987643
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.16 E-value=2.7e-08 Score=105.49 Aligned_cols=205 Identities=9% Similarity=0.031 Sum_probs=121.1
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
-+|+.++++.+.+=++..+..+.+..-+... . |-. .+++.+++.++........+..+.+.-. ......+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhh
Confidence 3567899999988888877766654333322 1 332 4455555555444444444455544422 255578889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI----GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
||+..+.+......+..+...+......++.+...+ +.+. . .+..+++.++...+.+.|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~-~---------------~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN-L---------------PLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-H---------------HHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-H---------------HHHHHHHHHHHHHHHHhCH
Confidence 999999888887777777777777666666665543 3221 1 1333445556677788999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC--CCCCCCCC-CchhHHHHHHHHH-HHHHhhhhhHhhhhhhhcCcCC
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWK-DP--KNPSGFFP-YGAKGVFNGAAMV-YLSYIGYDAVSTMAEEVKNPVK 277 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--~~~~~~~~-~g~~~~~~~~~~~-~~~f~G~e~~~~~~~E~k~p~r 277 (576)
|...+++.+...+.++..+.+.+..+.. +. ++.....+ ....+++.++... .+...+.-..+.++.+.|++++
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 9999999999888877776666555443 32 11111111 1122344444332 2222333446678888888654
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.84 E-value=1.4e-05 Score=85.33 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=139.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++......++..+++..+...+..... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 47799998888777777776666655544433 4543 222222 2222223333333333333 345799999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHH--HHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVV--LVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~ 208 (576)
....+.+....+.+. ...+......+..++..++.+. ..++++. +...+...-|.|...
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~------------------~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL------------------MYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH------------------HHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------------------HHHHHHHHHHHHHHHHhcchHHHH
Confidence 887777765554443 3344555555666777776432 1122221 122223344667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-----------------CCCCCCCC----CC-----CchhHHHHHHHHHHHHHhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-----------------DPKNPSGF----FP-----YGAKGVFNGAAMVYLSYIGY 262 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~f~G~ 262 (576)
....+-..+.++..+++.+.++.. +++.+..+ .+ .++...+.+....-..|.|.
T Consensus 158 ~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~ 237 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 237 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcC
Confidence 665555555544443333322211 11111111 11 01111111221222344554
Q ss_pred hh-HhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHH---HHHHHhccc----------------CCcCCCCchHHHhhcc
Q 039800 263 DA-VSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLM---AASMSMLMP----------------YDMIDAEAPFSGAFSG 322 (576)
Q Consensus 263 e~-~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~---~~~~~~~~~----------------~~~~~~~~p~~~~~~~ 322 (576)
+. ..+=.=..||+ |+..|+..++.+....+.++. -++.....+ ++..+++..++...+
T Consensus 238 ~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~- 315 (530)
T 3dh4_A 238 NQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ- 315 (530)
T ss_dssp TCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-
T ss_pred CHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-
Confidence 42 33333345775 567788877765543332211 111111110 111233455655554
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 323 KSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.++ +++..++....+.+.+++..+.+++.|-.+
T Consensus 316 -~lp-~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 316 -FLP-VGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp -TCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Hcc-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555 778888888888888888888888877664
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.80 E-value=6.2e-05 Score=81.46 Aligned_cols=282 Identities=12% Similarity=0.126 Sum_probs=143.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++....-.++..+++..+...+..... .|.. .++.|. +.+..+..++.+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 36788887766666666776666554444333 4543 222222 2222233344444443333 345799999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 132 FAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
....+.+....+.+. ...+......+..++..++.+. + ..+.+..++...+...-|.|.....
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHTTC---CCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 887777665554433 3445555556667777776432 1 0122222233444455688877666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-----------------CCCCCCCCCCCc--------hhHHHH-HHHHHHHHHhhhh-
Q 039800 211 NMILTVLHILFIAFVILMGFWK-----------------DPKNPSGFFPYG--------AKGVFN-GAAMVYLSYIGYD- 263 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~-----------------~~~~~~~~~~~g--------~~~~~~-~~~~~~~~f~G~e- 263 (576)
+.+-..+.++..+++.+.++.. .++.+..+.+.+ +..... +.......+.|.+
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 6666666555544433332211 122222111111 111111 1222233455555
Q ss_pred hHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHH-HHHH--hc-cc--------------CCcC-CCCchHHHhhccCC
Q 039800 264 AVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMA-ASMS--ML-MP--------------YDMI-DAEAPFSGAFSGKS 324 (576)
Q Consensus 264 ~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~-~~~~--~~-~~--------------~~~~-~~~~p~~~~~~~~~ 324 (576)
...+-.=+.||+ |+..|+...+.+...++.++.. ..+. .. .+ ..+. +++..++...+ .
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~~--~ 345 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ--F 345 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHHH--T
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHHH--H
Confidence 245555677886 5788888877666444433221 1111 11 00 1122 23344444443 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 325 DGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.+ +++..++....+.+.+++..+.+.+.|-.+
T Consensus 346 lp-~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LP-VGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 788888888888888888888888777654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.90 E-value=0.028 Score=58.94 Aligned_cols=303 Identities=13% Similarity=0.125 Sum_probs=153.1
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHH----HHHHHHHHHHHHHhhhcCcCCCchhHHHHHH---h
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIA----GLCALLSAFCYTEFAVDMPVAGGAFSYLRVT---F 129 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~----~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~---~ 129 (576)
+..+.+..++|..+|.|-.-..+.....++|.+-++.|++. ++..+..=+++++.+++..+.|..-.|-+-. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 45667777888899999888888888887776644444443 3444445555666555555556555553321 1
Q ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCc------------ccccccCCC-----CCCCchh-h
Q 039800 130 GEFAAF---LTGSNLILEYVMSNAAVARGFASYFGTAIG--VPTA------------KWRLKVDGL-----PDGFNEI-D 186 (576)
Q Consensus 130 g~~~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~-----~~~~~~~-~ 186 (576)
.+..|+ +.++.....|....+-...-+...+..-++ ...+ .+...+... ..+.+.. .
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~~ 169 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHHH
Confidence 122222 222222222322222222111111221111 0000 000000000 0000111 1
Q ss_pred HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHhhccCC-C--C-------CC-CCCCC-chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYST-RDSSVVNMILTVLHILFIAFVILMGFWKDP-K--N-------PS-GFFPY-GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~--~-------~~-~~~~~-g~~~~~~~~~ 253 (576)
+..+++.++..++..+|+ |...|...++...-.+.++++.+-++..+. . . +. .+..- +...+..+..
T Consensus 170 ~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~g 249 (519)
T 2a65_A 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVG 249 (519)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHH
Confidence 233344455666778899 789999999988888777777776655411 0 0 01 11111 1344677888
Q ss_pred HHHHHH-hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHH------HHH-hccc-CCcC-CCC-c-----hHH
Q 039800 254 MVYLSY-IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA------SMS-MLMP-YDMI-DAE-A-----PFS 317 (576)
Q Consensus 254 ~~~~~f-~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~------~~~-~~~~-~~~~-~~~-~-----p~~ 317 (576)
.++|+. .|+.....++.-.|+ +.|++|.-....+.-...-++..+ ... ...+ .++. +++ . -++
T Consensus 250 Q~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P 328 (519)
T 2a65_A 250 QIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLP 328 (519)
T ss_dssp HHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHH
T ss_pred HHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHH
Confidence 899998 588888888888876 567888766655554444332211 111 1122 1111 222 1 356
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 318 GAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
+++.+ .-+++....+..++.+.+.+++..+ .-...-+.-+|..
T Consensus 329 ~af~~-mp~g~~~~~lFF~~l~~agltS~i~----~~E~~vt~l~D~~ 371 (519)
T 2a65_A 329 AIFSQ-TAGGTFLGFLWFFLLFFAGLTSSIA----IMQPMIAFLEDEL 371 (519)
T ss_dssp HHHTT-STTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTS
T ss_pred HHHHh-CCCccchHHHHHHHHHHHHHHHHHH----HhhHhHHHHHHhh
Confidence 77874 4444555555555555555555444 3344444445543
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=94.63 E-value=5 Score=41.74 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.8
Q ss_pred CccccChHHHHHHHhhhhhhhhHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
-|.+++.++.++|.++.-+|.|+.+
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 3567999999999999988888764
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=94.11 E-value=6.2 Score=40.77 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=19.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|.|+.+
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhh
Confidence 457999999999999888887655
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=78.13 E-value=27 Score=36.04 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHhccCCCCCCccccccccH----HHHHHHHHHHHHHhc-------------CChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 483 FHCVVPQAKKPEFWGVPLMPW----IPCISIFLNIFLLGS-------------LDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
+.+++++++.+++||.|..++ .++++++.+.+.+.. +++.. ...++.++++.+.|+.|++++
T Consensus 390 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 390 IVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVE-LLVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp HHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHH-HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 344555556778899986554 455666666665553 24533 344555566666666654443
No 11
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=56.46 E-value=1.3e+02 Score=29.86 Aligned_cols=50 Identities=6% Similarity=0.071 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccc
Q 039800 498 VPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASF 547 (576)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 547 (576)
.+..|..+.++.+..++....+-...+.......++.++...+|...+++
T Consensus 381 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 381 GKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77778888888888777666554444444333333444444567766633
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=47.43 E-value=18 Score=23.55 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhcc
Q 039800 532 ALAVLVYLLYSVHA 545 (576)
Q Consensus 532 ~i~~~~y~~~~~~~ 545 (576)
++++++|++++||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 44555555555554
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.26 E-value=18 Score=23.47 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhcc
Q 039800 532 ALAVLVYLLYSVHA 545 (576)
Q Consensus 532 ~i~~~~y~~~~~~~ 545 (576)
++++++|++++||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 44555555555554
No 14
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.74 E-value=1e+02 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhcc
Q 039800 531 SALAVLVYLLYSVHA 545 (576)
Q Consensus 531 ~~i~~~~y~~~~~~~ 545 (576)
+++++++.++.+||+
T Consensus 25 vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhheehhh
Confidence 344444444444444
Done!