BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039801
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6L227|RNY_BACV8 Ribonuclease Y OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447
/ NCTC 11154) GN=rny PE=3 SV=1
Length = 511
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 ELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLD 184
E+K FL K+ DL +V + +IQ+ ++ +K E+ + + + E + K +EA ++K L+
Sbjct: 52 EVKEKFLNKKADLEKEVALRNQKIQQAENKLKQRELMLNQKQEEVQRKRTEAEAIKENLE 111
Query: 185 DSIAFNKSLEKKLNASGPISILENVQLSALS 215
I ++KK + + + E +L ALS
Sbjct: 112 AQIVI---IDKKKDELDKLQMQEREKLEALS 139
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1
SV=2
Length = 2057
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 101/209 (48%), Gaps = 24/209 (11%)
Query: 55 DLFSIKGSKTHGDPRARQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQ 114
+L S+ S+ D R +Q E+ +A+L + I+ A +ELQ EA ++ +Q
Sbjct: 1323 ELRSVNSSRQENDRRRKQ---AESQIAELQVKLAEIERARSELQEKCTKLQQEAENITNQ 1379
Query: 115 AVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMK-- 172
ELKA + +K + + M +++ E Q L++ E T +KL ++++
Sbjct: 1380 LEEAELKASAAVKSA------------SNMESQLTEAQQLLE--EETRQKLGLSSKLRQI 1425
Query: 173 ESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTS 232
ESE +L+ QL++ ++ E+KL + + ++ ++ A + + L + +
Sbjct: 1426 ESEKEALQEQLEEDDEAKRNYERKL--AEVTTQMQEIKKKAEEDADLAKELEEGKKRLNK 1483
Query: 233 FVKLL---VREMESANWDLDLAAKVIEPE 258
++ L V+E+ + N LD + K I+ E
Sbjct: 1484 DIEALERQVKELIAQNDRLDKSKKKIQSE 1512
>sp|Q5ZJ27|HOOK1_CHICK Protein Hook homolog 1 OS=Gallus gallus GN=HOOK1 PE=2 SV=1
Length = 718
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 60 KGSKTHGDPRARQR--AVMEALVAKLFAGVTSIKAAYAELQ--MAQNPYNSEAIHLADQA 115
+GSKT G +Q+ A ME L +++ + +AA AELQ ++QNP + A +
Sbjct: 530 QGSKTEGSSNLKQKLAAHMEKL-SEVHDELQKKEAALAELQPDVSQNPQKIGELEAALRK 588
Query: 116 VVDELKAISELKRSFLKKELD----LSPQVTIMLAEIQEQQSLMKTYEITIKKLEG-EAE 170
+++KA+ E + +L+K + L P++ AEI L K KK+E EAE
Sbjct: 589 KDEDMKAMEERYKMYLEKARNVIKTLDPKLNPASAEI---MLLRKQITERDKKIEALEAE 645
Query: 171 MKESEARSLKRQLDDSIAFNKSL 193
K ++ R + L + +NKSL
Sbjct: 646 YKLAKLRDYEENLIVTAWYNKSL 668
>sp|Q08014|MEDB_GIAIN Median body protein OS=Giardia intestinalis PE=2 SV=1
Length = 857
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 179 LKRQLDDSIAFNKSLEKKLNASGPISILENVQL------SALSTSHFVQFLHFSLRSMTS 232
L+RQLD ++ ++ N SG ++ +EN+Q S+ S+ H ++ L + ++ +
Sbjct: 228 LQRQLD-------TIRRRGNTSGVMAEIENIQRQIDDANSSASSEHELRMLRAEVETLRA 280
Query: 233 FVKLLVREMESANWDLDLAAKVIEPEAIFTKPSHRYFVFQS 273
++ R +E+ N DL + I A S RY Q+
Sbjct: 281 QKSIVTR-LEAENADLRRELQDIRGRAQEMSASQRYSANQA 320
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E GN=rep PE=1 SV=1
Length = 6758
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 180 KRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVK 235
K L +IAF ++K+ + P+SIL+N L ++T FV + + + R +TSF K
Sbjct: 6156 KTSLPTNIAFELFAKRKVGLTPPLSILKN--LGVVATYKFVLWDYEAERPLTSFTK 6209
>sp|Q93VD3|CIPKN_ARATH CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis
thaliana GN=CIPK23 PE=1 SV=1
Length = 482
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 80 VAKLFAGVTSIKAAYAELQMAQNPYNSE--AIHLADQAVVDELKAISELKRSFLKKELDL 137
V K G T + +A+++ A+N N + AI + D+ V + K I+++KR +L
Sbjct: 28 VGKYELGRTLGEGTFAKVKFARNVENGDNVAIKVIDKEKVLKNKMIAQIKREISTMKLIK 87
Query: 138 SPQVTIMLAEIQEQQSLMKTYEITIK-----KLEGEAEMKESEARSLKRQLDDSIAF 189
P V M + + + E K+ +KE EAR +QL +++ +
Sbjct: 88 HPNVIRMFEVMASKTKIYFVLEFVTGGELFDKISSNGRLKEDEARKYFQQLINAVDY 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,669,087
Number of Sequences: 539616
Number of extensions: 5854525
Number of successful extensions: 18933
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 18490
Number of HSP's gapped (non-prelim): 612
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)