Query 039801
Match_columns 466
No_of_seqs 114 out of 137
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 13:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 1.1E-47 2.3E-52 343.7 15.1 130 68-197 2-131 (131)
2 PF10205 KLRAQ: Predicted coil 92.3 0.71 1.5E-05 40.7 7.7 57 142-198 8-64 (102)
3 PRK09039 hypothetical protein; 91.0 6.8 0.00015 41.0 14.7 65 121-189 123-187 (343)
4 PF08317 Spc7: Spc7 kinetochor 89.1 30 0.00065 35.7 17.8 121 73-201 144-271 (325)
5 PF01025 GrpE: GrpE; InterPro 88.8 0.45 9.9E-06 43.7 3.7 53 393-452 109-162 (165)
6 COG0497 RecN ATPase involved i 88.4 6.2 0.00013 44.1 12.5 79 85-171 266-353 (557)
7 KOG2264 Exostosin EXT1L [Signa 85.0 5.5 0.00012 44.6 9.7 59 140-198 94-152 (907)
8 PF08614 ATG16: Autophagy prot 84.8 1.7 3.6E-05 41.6 5.3 114 81-198 27-168 (194)
9 PRK10869 recombination and rep 83.7 15 0.00032 40.8 12.7 136 90-246 246-388 (553)
10 smart00787 Spc7 Spc7 kinetocho 80.9 75 0.0016 33.1 17.3 120 74-201 140-266 (312)
11 COG0576 GrpE Molecular chapero 79.7 2 4.3E-05 41.6 3.7 49 393-448 135-183 (193)
12 PF12329 TMF_DNA_bd: TATA elem 79.2 10 0.00022 31.3 7.2 55 144-198 17-71 (74)
13 PF04102 SlyX: SlyX; InterPro 78.9 11 0.00023 30.7 7.1 50 144-193 2-51 (69)
14 PRK11637 AmiB activator; Provi 77.6 76 0.0017 33.8 15.1 45 142-186 78-122 (428)
15 PRK11637 AmiB activator; Provi 76.2 47 0.001 35.4 13.1 49 142-190 187-235 (428)
16 smart00787 Spc7 Spc7 kinetocho 75.6 73 0.0016 33.2 13.9 110 74-187 168-284 (312)
17 PRK14150 heat shock protein Gr 75.5 2.9 6.3E-05 40.5 3.4 54 394-454 138-192 (193)
18 cd00446 GrpE GrpE is the adeni 74.8 3.1 6.7E-05 37.6 3.3 49 393-448 83-131 (137)
19 COG2433 Uncharacterized conser 74.7 10 0.00022 42.8 7.7 30 170-199 477-506 (652)
20 PF08317 Spc7: Spc7 kinetochor 74.6 29 0.00063 35.8 10.7 84 109-199 161-248 (325)
21 PRK11448 hsdR type I restricti 74.5 36 0.00079 41.2 12.8 105 75-186 104-210 (1123)
22 PF10211 Ax_dynein_light: Axon 74.2 59 0.0013 31.3 12.0 37 76-112 82-118 (189)
23 PRK14151 heat shock protein Gr 74.2 4.1 8.8E-05 39.0 4.1 55 393-454 119-174 (176)
24 PF11559 ADIP: Afadin- and alp 73.2 74 0.0016 29.0 13.5 94 76-184 57-150 (151)
25 PRK14140 heat shock protein Gr 72.3 3.9 8.5E-05 39.7 3.5 53 394-453 136-189 (191)
26 COG2433 Uncharacterized conser 71.9 59 0.0013 37.0 12.7 88 71-189 422-510 (652)
27 PF15290 Syntaphilin: Golgi-lo 71.3 23 0.00049 36.7 8.7 66 159-244 74-139 (305)
28 PF12325 TMF_TATA_bd: TATA ele 70.8 7.9 0.00017 35.0 4.9 36 161-196 17-52 (120)
29 PRK14158 heat shock protein Gr 70.1 5.7 0.00012 38.7 4.1 54 394-453 138-192 (194)
30 COG4026 Uncharacterized protei 69.3 31 0.00067 34.8 9.0 102 76-199 71-188 (290)
31 PRK00295 hypothetical protein; 69.1 27 0.00058 28.4 7.2 50 144-193 3-52 (68)
32 PRK14144 heat shock protein Gr 68.7 5.1 0.00011 39.2 3.5 54 394-454 143-197 (199)
33 PRK14145 heat shock protein Gr 68.1 5.6 0.00012 38.9 3.6 52 394-452 141-193 (196)
34 PRK10884 SH3 domain-containing 68.0 58 0.0013 32.0 10.6 49 149-197 121-169 (206)
35 PRK14161 heat shock protein Gr 67.5 7.3 0.00016 37.4 4.2 55 394-454 120-175 (178)
36 PRK14148 heat shock protein Gr 67.0 6.1 0.00013 38.5 3.6 54 394-454 139-193 (195)
37 PRK14154 heat shock protein Gr 66.9 7.6 0.00016 38.3 4.2 55 393-453 151-206 (208)
38 PRK14160 heat shock protein Gr 66.5 7.4 0.00016 38.4 4.1 52 394-453 157-209 (211)
39 PF06785 UPF0242: Uncharacteri 66.4 12 0.00027 39.4 5.8 148 122-290 149-299 (401)
40 PRK04406 hypothetical protein; 66.0 31 0.00067 28.7 7.1 46 143-188 8-53 (75)
41 TIGR01010 BexC_CtrB_KpsE polys 66.0 1.7E+02 0.0037 30.3 16.1 83 74-156 173-259 (362)
42 TIGR00634 recN DNA repair prot 65.8 1.6E+02 0.0034 32.7 14.7 136 88-247 251-394 (563)
43 PRK14147 heat shock protein Gr 65.8 5.9 0.00013 37.8 3.2 54 393-453 114-168 (172)
44 PRK02793 phi X174 lysis protei 65.5 35 0.00076 28.1 7.3 49 142-190 4-52 (72)
45 PRK04325 hypothetical protein; 65.3 33 0.00072 28.4 7.1 48 143-190 6-53 (74)
46 PRK00736 hypothetical protein; 65.2 34 0.00074 27.8 7.1 49 144-192 3-51 (68)
47 TIGR00634 recN DNA repair prot 65.2 1.4E+02 0.0029 33.3 14.0 95 83-185 268-371 (563)
48 PF09738 DUF2051: Double stran 64.7 46 0.001 34.6 9.6 74 121-196 84-162 (302)
49 COG5185 HEC1 Protein involved 64.5 70 0.0015 35.5 11.1 98 76-189 262-359 (622)
50 PRK14141 heat shock protein Gr 64.4 6.8 0.00015 38.6 3.4 56 394-456 136-192 (209)
51 PF07106 TBPIP: Tat binding pr 64.3 24 0.00051 32.9 6.8 55 144-198 77-133 (169)
52 PRK14162 heat shock protein Gr 64.2 7.4 0.00016 37.9 3.6 54 394-453 138-192 (194)
53 PHA02562 46 endonuclease subun 63.9 1.7E+02 0.0037 31.8 14.3 105 71-198 299-403 (562)
54 PF07106 TBPIP: Tat binding pr 63.7 20 0.00044 33.3 6.3 78 94-188 59-137 (169)
55 PF08614 ATG16: Autophagy prot 62.8 64 0.0014 30.8 9.6 56 143-198 127-182 (194)
56 PRK10325 heat shock protein Gr 62.5 7.5 0.00016 37.8 3.3 55 394-455 139-194 (197)
57 PRK14163 heat shock protein Gr 61.7 13 0.00027 36.9 4.7 58 394-458 132-190 (214)
58 PRK02119 hypothetical protein; 61.4 48 0.001 27.4 7.3 46 143-188 6-51 (73)
59 PRK00846 hypothetical protein; 60.7 51 0.0011 27.8 7.4 52 143-194 10-61 (77)
60 PF15619 Lebercilin: Ciliary p 60.7 66 0.0014 31.3 9.4 47 142-188 64-110 (194)
61 PF09726 Macoilin: Transmembra 60.3 36 0.00079 39.1 8.7 42 220-262 621-665 (697)
62 PRK10884 SH3 domain-containing 60.3 40 0.00087 33.1 7.9 22 165-186 123-144 (206)
63 PF05984 Cytomega_UL20A: Cytom 60.2 3.5 7.6E-05 35.4 0.5 16 376-391 1-16 (100)
64 PRK14153 heat shock protein Gr 59.6 12 0.00027 36.4 4.2 56 393-455 131-187 (194)
65 PF12718 Tropomyosin_1: Tropom 59.6 39 0.00084 31.2 7.2 55 144-198 5-59 (143)
66 PRK14155 heat shock protein Gr 59.5 12 0.00026 36.8 4.1 58 393-456 114-172 (208)
67 PF12709 Kinetocho_Slk19: Cent 59.0 38 0.00081 29.3 6.5 32 157-188 46-77 (87)
68 PF05529 Bap31: B-cell recepto 58.8 41 0.00089 31.9 7.5 34 155-188 156-189 (192)
69 PF06818 Fez1: Fez1; InterPro 57.9 15 0.00033 36.2 4.4 39 160-198 17-55 (202)
70 KOG4552 Vitamin-D-receptor int 57.7 45 0.00097 33.3 7.6 30 159-188 73-102 (272)
71 PRK14139 heat shock protein Gr 57.4 12 0.00025 36.3 3.6 55 393-455 128-183 (185)
72 PF10234 Cluap1: Clusterin-ass 57.0 1.4E+02 0.0031 30.6 11.4 102 98-199 62-201 (267)
73 PF15290 Syntaphilin: Golgi-lo 56.6 78 0.0017 32.9 9.3 42 145-186 88-136 (305)
74 PF09726 Macoilin: Transmembra 55.7 57 0.0012 37.6 9.2 44 145-188 611-657 (697)
75 PRK14157 heat shock protein Gr 55.6 12 0.00025 37.5 3.3 49 401-455 175-224 (227)
76 PF11932 DUF3450: Protein of u 55.0 1.7E+02 0.0036 29.0 11.4 53 141-193 51-103 (251)
77 PF08826 DMPK_coil: DMPK coile 54.4 61 0.0013 26.2 6.6 19 178-196 29-47 (61)
78 PHA02562 46 endonuclease subun 54.3 2.5E+02 0.0054 30.5 13.5 20 144-163 304-323 (562)
79 PF02050 FliJ: Flagellar FliJ 54.1 1.2E+02 0.0027 24.9 11.1 77 116-194 17-93 (123)
80 PF07851 TMPIT: TMPIT-like pro 52.8 90 0.0019 33.0 9.4 87 85-197 4-91 (330)
81 PF06818 Fez1: Fez1; InterPro 52.1 97 0.0021 30.6 8.9 57 143-199 49-105 (202)
82 PRK11546 zraP zinc resistance 50.9 1.1E+02 0.0024 28.7 8.7 34 98-131 38-71 (143)
83 KOG3647 Predicted coiled-coil 49.4 1.9E+02 0.004 30.2 10.6 30 97-126 2-31 (338)
84 PF00038 Filament: Intermediat 49.2 2.8E+02 0.0061 27.8 12.2 55 145-199 194-248 (312)
85 COG4942 Membrane-bound metallo 48.8 1.9E+02 0.0041 31.7 11.2 41 143-183 63-103 (420)
86 TIGR02169 SMC_prok_A chromosom 47.5 3.4E+02 0.0074 31.9 14.1 50 145-194 419-468 (1164)
87 PF04156 IncA: IncA protein; 47.0 2.5E+02 0.0053 26.3 12.6 29 152-180 122-150 (191)
88 PF09763 Sec3_C: Exocyst compl 46.8 42 0.00092 38.1 6.4 95 159-259 43-140 (701)
89 PF14817 HAUS5: HAUS augmin-li 46.8 5.1E+02 0.011 29.9 16.9 77 144-243 84-160 (632)
90 COG4942 Membrane-bound metallo 46.7 74 0.0016 34.7 7.8 57 121-188 38-94 (420)
91 PRK14159 heat shock protein Gr 46.7 25 0.00055 33.8 4.0 45 402-453 129-174 (176)
92 PF15003 HAUS2: HAUS augmin-li 46.6 98 0.0021 32.0 8.3 30 165-194 73-103 (277)
93 PRK14146 heat shock protein Gr 46.4 19 0.00042 35.5 3.2 49 401-455 159-212 (215)
94 COG3883 Uncharacterized protei 46.2 1.9E+02 0.0042 29.7 10.3 54 142-195 165-218 (265)
95 KOG0993 Rab5 GTPase effector R 45.5 4.6E+02 0.0099 29.0 13.8 120 71-198 338-465 (542)
96 KOG0995 Centromere-associated 45.4 1.8E+02 0.0039 33.0 10.6 42 147-188 281-322 (581)
97 KOG0804 Cytoplasmic Zn-finger 45.0 82 0.0018 34.7 7.8 41 148-188 409-449 (493)
98 PF14584 DUF4446: Protein of u 44.2 76 0.0016 29.8 6.6 17 116-132 18-34 (151)
99 KOG0977 Nuclear envelope prote 43.3 28 0.00061 39.0 4.2 95 167-287 296-393 (546)
100 PF10018 Med4: Vitamin-D-recep 42.6 1.2E+02 0.0025 29.0 7.8 28 162-189 31-58 (188)
101 PRK13729 conjugal transfer pil 42.5 65 0.0014 35.6 6.7 25 160-184 97-121 (475)
102 PF11500 Cut12: Spindle pole b 42.4 64 0.0014 30.6 5.8 31 169-199 100-130 (152)
103 PF05565 Sipho_Gp157: Siphovir 41.8 2.2E+02 0.0047 26.7 9.3 38 153-190 40-77 (162)
104 COG1579 Zn-ribbon protein, pos 41.8 3.9E+02 0.0084 27.1 14.5 104 79-187 32-137 (239)
105 TIGR03185 DNA_S_dndD DNA sulfu 41.7 2.3E+02 0.005 32.1 11.1 41 148-188 423-463 (650)
106 PRK14143 heat shock protein Gr 41.7 42 0.00092 33.7 4.8 57 393-456 166-223 (238)
107 TIGR02231 conserved hypothetic 41.5 3.4E+02 0.0075 29.7 12.2 40 150-189 128-167 (525)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.5 2.6E+02 0.0057 25.1 12.5 106 76-197 19-128 (132)
109 PF10779 XhlA: Haemolysin XhlA 41.3 1.3E+02 0.0029 24.3 6.9 46 146-191 6-51 (71)
110 PRK14142 heat shock protein Gr 41.2 28 0.0006 34.8 3.4 51 401-456 132-183 (223)
111 PF05600 DUF773: Protein of un 40.6 2.6E+02 0.0055 31.2 11.0 91 104-196 397-489 (507)
112 PF05266 DUF724: Protein of un 40.5 1.1E+02 0.0024 29.7 7.3 17 173-189 130-146 (190)
113 PF05983 Med7: MED7 protein; 40.3 57 0.0012 30.8 5.2 32 157-188 128-159 (162)
114 PF04156 IncA: IncA protein; 40.1 3.1E+02 0.0068 25.6 10.2 18 94-111 59-76 (191)
115 PRK14149 heat shock protein Gr 40.1 40 0.00086 32.9 4.2 53 394-454 135-188 (191)
116 PF07439 DUF1515: Protein of u 39.7 1E+02 0.0022 27.8 6.3 48 122-169 16-63 (112)
117 PF14257 DUF4349: Domain of un 39.7 1.7E+02 0.0036 29.0 8.7 27 174-200 169-195 (262)
118 TIGR02473 flagell_FliJ flagell 39.7 2.3E+02 0.0049 24.8 8.8 77 115-195 31-110 (141)
119 KOG1937 Uncharacterized conser 39.6 5.8E+02 0.013 28.5 13.1 131 42-183 207-371 (521)
120 PRK09039 hypothetical protein; 39.6 3.9E+02 0.0084 28.1 11.7 56 349-409 267-322 (343)
121 PF12777 MT: Microtubule-bindi 38.9 1.7E+02 0.0038 30.4 9.0 54 144-197 219-272 (344)
122 PF05377 FlaC_arch: Flagella a 38.6 66 0.0014 25.6 4.4 36 162-197 2-37 (55)
123 COG1508 RpoN DNA-directed RNA 38.4 1.3E+02 0.0028 33.1 8.2 112 77-197 142-303 (444)
124 TIGR02169 SMC_prok_A chromosom 37.8 4.9E+02 0.011 30.7 13.4 23 76-98 763-785 (1164)
125 PRK14164 heat shock protein Gr 37.6 29 0.00063 34.5 3.0 47 401-455 169-216 (218)
126 PF08172 CASP_C: CASP C termin 37.6 1.1E+02 0.0023 31.0 7.0 54 142-198 78-131 (248)
127 PF11853 DUF3373: Protein of u 37.4 21 0.00044 39.5 2.0 17 396-412 240-256 (489)
128 KOG0996 Structural maintenance 37.4 7.8E+02 0.017 30.6 14.6 114 74-187 461-576 (1293)
129 KOG4603 TBP-1 interacting prot 37.3 2.5E+02 0.0053 27.5 8.9 37 142-183 103-139 (201)
130 KOG0976 Rho/Rac1-interacting s 36.8 2.6E+02 0.0055 33.4 10.3 108 122-229 82-195 (1265)
131 KOG0976 Rho/Rac1-interacting s 36.6 1.9E+02 0.004 34.4 9.2 84 140-229 359-453 (1265)
132 PF04859 DUF641: Plant protein 36.4 3.5E+02 0.0076 25.0 9.8 89 108-196 6-116 (131)
133 PF11559 ADIP: Afadin- and alp 36.0 2.2E+02 0.0049 25.8 8.3 27 162-188 61-87 (151)
134 PF01486 K-box: K-box region; 36.0 2.6E+02 0.0056 23.8 8.2 72 118-197 26-98 (100)
135 COG1382 GimC Prefoldin, chaper 35.1 1.1E+02 0.0024 27.9 5.9 43 148-190 72-114 (119)
136 COG2900 SlyX Uncharacterized p 34.9 2.4E+02 0.0052 23.7 7.4 52 142-193 4-55 (72)
137 PRK04778 septation ring format 34.8 6.9E+02 0.015 27.9 13.7 38 84-121 228-266 (569)
138 PF13815 Dzip-like_N: Iguana/D 34.7 1.2E+02 0.0026 26.8 6.1 40 144-183 78-117 (118)
139 PF12329 TMF_DNA_bd: TATA elem 34.5 2.6E+02 0.0057 23.0 7.7 39 147-185 34-72 (74)
140 PF12614 RRF_GI: Ribosome recy 34.3 80 0.0017 29.1 5.0 67 124-190 33-100 (128)
141 TIGR00606 rad50 rad50. This fa 34.3 3.5E+02 0.0076 33.4 11.8 39 79-117 720-761 (1311)
142 KOG4643 Uncharacterized coiled 34.2 1.4E+02 0.003 36.1 7.9 26 110-135 131-156 (1195)
143 KOG0250 DNA repair protein RAD 34.2 2.8E+02 0.0061 33.7 10.5 13 150-162 369-381 (1074)
144 KOG0161 Myosin class II heavy 34.1 2.7E+02 0.0058 36.1 10.8 54 142-195 932-985 (1930)
145 PRK15422 septal ring assembly 33.5 92 0.002 26.6 4.8 39 161-199 5-43 (79)
146 KOG0980 Actin-binding protein 33.1 8.4E+02 0.018 29.4 13.8 97 145-241 507-645 (980)
147 KOG2189 Vacuolar H+-ATPase V0 32.8 2.2E+02 0.0048 33.5 9.2 83 110-195 45-134 (829)
148 KOG0718 Molecular chaperone (D 32.5 92 0.002 34.6 5.9 94 89-202 25-124 (546)
149 TIGR01843 type_I_hlyD type I s 32.4 5.2E+02 0.011 26.6 11.3 31 155-185 139-169 (423)
150 PRK13729 conjugal transfer pil 32.2 1E+02 0.0022 34.1 6.2 13 75-87 53-65 (475)
151 PF08657 DASH_Spc34: DASH comp 32.0 1.2E+02 0.0027 30.8 6.5 35 120-158 179-213 (259)
152 PF15272 BBP1_C: Spindle pole 31.9 5.1E+02 0.011 25.6 11.3 84 88-195 40-128 (196)
153 PF14555 UBA_4: UBA-like domai 31.7 39 0.00084 24.7 2.1 19 237-255 18-36 (43)
154 PF00038 Filament: Intermediat 31.6 1.9E+02 0.004 29.1 7.7 57 142-198 71-127 (312)
155 KOG0250 DNA repair protein RAD 31.6 6E+02 0.013 31.1 12.6 89 109-197 297-388 (1074)
156 TIGR03007 pepcterm_ChnLen poly 31.3 6.9E+02 0.015 26.9 14.0 73 122-198 262-348 (498)
157 TIGR02338 gimC_beta prefoldin, 31.2 2E+02 0.0043 25.1 6.8 70 115-186 38-107 (110)
158 PF05812 Herpes_BLRF2: Herpesv 30.9 2.5E+02 0.0053 25.7 7.4 65 172-241 1-65 (118)
159 PF05591 DUF770: Protein of un 30.8 1E+02 0.0022 29.2 5.2 33 104-140 99-133 (157)
160 PF03962 Mnd1: Mnd1 family; I 30.7 2.3E+02 0.005 27.3 7.8 32 159-190 68-99 (188)
161 KOG0994 Extracellular matrix g 30.5 8.9E+02 0.019 30.4 13.5 48 76-128 1558-1605(1758)
162 TIGR02680 conserved hypothetic 30.5 8.2E+02 0.018 30.6 14.1 32 85-116 818-853 (1353)
163 COG1196 Smc Chromosome segrega 30.3 5.1E+02 0.011 31.6 12.2 14 86-99 377-390 (1163)
164 PF15188 CCDC-167: Coiled-coil 30.2 2.1E+02 0.0045 24.7 6.5 29 140-168 37-65 (85)
165 PF12018 DUF3508: Domain of un 30.2 5E+02 0.011 26.5 10.5 83 106-188 4-90 (281)
166 PF06120 Phage_HK97_TLTM: Tail 29.9 5.5E+02 0.012 26.9 10.8 37 86-126 32-70 (301)
167 KOG0996 Structural maintenance 29.6 3.8E+02 0.0083 33.1 10.6 48 140-187 821-878 (1293)
168 PRK15178 Vi polysaccharide exp 29.3 4.4E+02 0.0096 29.0 10.4 52 147-198 287-338 (434)
169 PRK04863 mukB cell division pr 29.1 1.2E+03 0.025 29.8 15.1 25 221-245 463-487 (1486)
170 PRK13182 racA polar chromosome 29.0 3.7E+02 0.008 25.8 8.8 41 159-199 98-143 (175)
171 PF06810 Phage_GP20: Phage min 28.9 1.8E+02 0.0038 27.3 6.5 51 144-198 25-79 (155)
172 PF04977 DivIC: Septum formati 28.8 84 0.0018 24.9 3.8 24 163-186 27-50 (80)
173 KOG1962 B-cell receptor-associ 28.7 6.1E+02 0.013 25.4 10.6 29 158-186 163-191 (216)
174 KOG0964 Structural maintenance 28.6 2E+02 0.0044 34.7 8.1 54 142-195 421-474 (1200)
175 PF12808 Mto2_bdg: Micro-tubul 28.3 97 0.0021 24.4 3.8 42 158-199 6-47 (52)
176 PRK10869 recombination and rep 28.2 8.8E+02 0.019 27.1 17.4 93 86-186 266-367 (553)
177 PF04111 APG6: Autophagy prote 27.8 7.1E+02 0.015 25.9 11.6 53 143-195 82-134 (314)
178 PF00170 bZIP_1: bZIP transcri 27.8 2.5E+02 0.0055 21.9 6.3 18 174-191 40-57 (64)
179 KOG0435 Leucyl-tRNA synthetase 27.6 56 0.0012 37.8 3.4 61 327-391 84-144 (876)
180 PF05529 Bap31: B-cell recepto 27.5 1.8E+02 0.0039 27.5 6.4 31 167-197 154-184 (192)
181 PF14193 DUF4315: Domain of un 27.5 96 0.0021 26.5 4.0 16 212-227 46-61 (83)
182 cd00632 Prefoldin_beta Prefold 27.3 1.9E+02 0.0041 24.9 6.0 34 154-187 71-104 (105)
183 COG1196 Smc Chromosome segrega 27.0 1.2E+03 0.026 28.6 14.5 39 146-184 828-866 (1163)
184 COG4839 FtsL Protein required 27.0 5E+02 0.011 23.8 9.0 95 94-195 3-102 (120)
185 PF07160 DUF1395: Protein of u 26.7 5.5E+02 0.012 25.8 9.9 64 117-189 2-65 (243)
186 KOG0982 Centrosomal protein Nu 26.3 3.7E+02 0.0079 29.8 8.9 16 86-101 244-260 (502)
187 PF09457 RBD-FIP: FIP domain ; 26.3 2E+02 0.0043 22.2 5.2 29 161-189 8-36 (48)
188 PRK04863 mukB cell division pr 26.2 1.1E+03 0.024 30.1 14.1 103 85-201 1031-1138(1486)
189 PF05700 BCAS2: Breast carcino 26.1 6.1E+02 0.013 24.8 10.0 13 89-101 105-117 (221)
190 PF00769 ERM: Ezrin/radixin/mo 26.0 6E+02 0.013 25.4 10.1 45 153-197 82-126 (246)
191 PF00170 bZIP_1: bZIP transcri 25.9 1.8E+02 0.0038 22.8 5.1 36 155-190 28-63 (64)
192 KOG0161 Myosin class II heavy 25.7 1E+03 0.022 31.2 13.8 30 71-100 1386-1415(1930)
193 PF09849 DUF2076: Uncharacteri 25.3 1.3E+02 0.0028 30.5 5.2 30 78-120 7-36 (247)
194 COG4026 Uncharacterized protei 25.3 3.8E+02 0.0082 27.4 8.3 49 141-189 158-206 (290)
195 PRK10803 tol-pal system protei 25.2 2.2E+02 0.0047 28.8 6.8 14 323-336 246-259 (263)
196 PF04977 DivIC: Septum formati 25.1 1.9E+02 0.0042 22.8 5.3 32 168-199 18-49 (80)
197 PF11598 COMP: Cartilage oligo 25.1 2.4E+02 0.0052 21.6 5.4 39 142-187 4-42 (45)
198 COG5124 Protein predicted to b 25.1 3.1E+02 0.0067 27.0 7.4 26 265-290 172-199 (209)
199 PHA00727 hypothetical protein 25.0 6.3E+02 0.014 25.3 9.6 89 118-232 12-112 (278)
200 PRK14156 heat shock protein Gr 25.0 78 0.0017 30.5 3.4 45 404-453 130-175 (177)
201 COG3883 Uncharacterized protei 24.9 7.8E+02 0.017 25.4 10.8 128 108-251 32-163 (265)
202 PF11365 DUF3166: Protein of u 24.9 1.2E+02 0.0027 26.6 4.3 79 163-241 4-89 (96)
203 KOG4657 Uncharacterized conser 24.7 7.6E+02 0.016 25.2 12.5 84 73-185 28-111 (246)
204 PRK04778 septation ring format 24.6 1E+03 0.022 26.6 14.0 57 74-131 285-341 (569)
205 PF15254 CCDC14: Coiled-coil d 24.6 1.7E+02 0.0036 34.4 6.4 49 145-193 507-555 (861)
206 PF05911 DUF869: Plant protein 24.0 3.4E+02 0.0073 32.0 8.8 41 153-193 113-153 (769)
207 TIGR02209 ftsL_broad cell divi 23.9 2E+02 0.0043 23.4 5.2 44 152-196 23-66 (85)
208 smart00338 BRLZ basic region l 23.3 2.7E+02 0.0058 21.8 5.7 15 175-189 41-55 (65)
209 KOG0614 cGMP-dependent protein 23.1 2E+02 0.0043 32.8 6.4 32 155-186 40-71 (732)
210 TIGR03185 DNA_S_dndD DNA sulfu 23.0 5.1E+02 0.011 29.3 9.9 45 144-188 207-251 (650)
211 KOG3091 Nuclear pore complex, 22.9 2.1E+02 0.0045 32.0 6.5 58 142-199 337-394 (508)
212 PRK12704 phosphodiesterase; Pr 22.8 1.1E+03 0.023 26.5 12.1 6 212-217 148-153 (520)
213 PHA03011 hypothetical protein; 22.8 4.1E+02 0.0089 23.9 7.1 31 159-189 84-114 (120)
214 PRK14143 heat shock protein Gr 22.7 6E+02 0.013 25.7 9.3 12 230-241 116-127 (238)
215 PF13863 DUF4200: Domain of un 22.4 3.3E+02 0.0071 23.7 6.7 51 148-198 55-105 (126)
216 PF04799 Fzo_mitofusin: fzo-li 22.4 2E+02 0.0043 27.8 5.6 24 160-183 120-143 (171)
217 PRK14161 heat shock protein Gr 22.4 7.1E+02 0.015 24.0 9.8 15 229-243 67-81 (178)
218 KOG0837 Transcriptional activa 22.2 2.2E+02 0.0049 29.4 6.1 41 143-183 224-264 (279)
219 PF01166 TSC22: TSC-22/dip/bun 22.2 67 0.0015 25.9 2.0 21 175-195 15-35 (59)
220 PF01920 Prefoldin_2: Prefoldi 22.1 2.1E+02 0.0046 23.8 5.2 26 163-188 65-90 (106)
221 KOG1853 LIS1-interacting prote 22.1 9.1E+02 0.02 25.2 10.6 96 125-254 24-130 (333)
222 PF01025 GrpE: GrpE; InterPro 21.9 84 0.0018 28.7 3.0 43 145-187 10-52 (165)
223 PF10481 CENP-F_N: Cenp-F N-te 21.7 2.3E+02 0.005 29.6 6.1 39 156-194 77-115 (307)
224 PF10267 Tmemb_cc2: Predicted 21.7 1E+03 0.022 25.9 11.3 26 75-100 209-234 (395)
225 KOG4797 Transcriptional regula 21.5 86 0.0019 28.4 2.7 23 174-196 67-89 (123)
226 COG3879 Uncharacterized protei 21.3 90 0.0019 31.8 3.2 14 232-245 139-152 (247)
227 PF05739 SNARE: SNARE domain; 21.1 3.8E+02 0.0081 20.3 8.4 36 144-186 23-58 (63)
228 KOG0963 Transcription factor/C 21.0 1.5E+02 0.0032 33.9 5.1 34 152-185 309-342 (629)
229 PF07200 Mod_r: Modifier of ru 21.0 5.5E+02 0.012 23.1 8.1 15 215-229 125-139 (150)
230 PF12958 DUF3847: Protein of u 20.9 2.4E+02 0.0051 24.4 5.2 63 163-227 4-76 (86)
231 KOG4848 Extracellular matrix-a 20.9 8.4E+02 0.018 24.3 9.7 80 106-188 95-174 (225)
232 PF09302 XLF: XLF (XRCC4-like 20.9 1.7E+02 0.0036 27.1 4.7 27 159-185 145-171 (171)
233 PF09755 DUF2046: Uncharacteri 20.7 1E+03 0.022 25.2 11.6 96 148-247 130-251 (310)
234 KOG0243 Kinesin-like protein [ 20.6 4.3E+02 0.0094 32.2 8.9 22 163-184 451-472 (1041)
235 PF11995 DUF3490: Domain of un 20.6 1.2E+02 0.0027 28.9 3.7 63 118-183 42-105 (161)
236 PF11932 DUF3450: Protein of u 20.6 4.1E+02 0.0088 26.3 7.6 25 162-186 65-89 (251)
237 KOG3003 Molecular chaperone of 20.4 3.9E+02 0.0084 27.2 7.3 69 160-255 71-140 (236)
238 TIGR01005 eps_transp_fam exopo 20.4 1.3E+03 0.028 26.4 15.9 30 122-155 303-332 (754)
239 TIGR02894 DNA_bind_RsfA transc 20.4 3E+02 0.0065 26.4 6.2 37 162-198 99-135 (161)
240 PRK00888 ftsB cell division pr 20.1 1.3E+02 0.0029 26.4 3.6 14 173-186 47-60 (105)
241 PF12240 Angiomotin_C: Angiomo 20.1 6.5E+02 0.014 25.1 8.7 78 85-170 3-81 (205)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=1.1e-47 Score=343.68 Aligned_cols=130 Identities=57% Similarity=0.773 Sum_probs=127.3
Q ss_pred hhHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHH
Q 039801 68 PRARQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAE 147 (466)
Q Consensus 68 ~~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~ae 147 (466)
++.++.++++++|++|||+||+||+||+|||+||+|||||+|++||++||+||++||+||++|++++.+++|+.+++.++
T Consensus 2 ~~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~ 81 (131)
T PF04859_consen 2 EEAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAE 81 (131)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
|+|||++|+|||++++|||+|+++||+||..||++|+++.+.|++|||||
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999996
No 2
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=92.25 E-value=0.71 Score=40.73 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
+-|.|+...+...+-++..-..+|..+++.||..|..+.++++.+.-+|..|++|+.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888999999999999999999999999999999999964
No 3
>PRK09039 hypothetical protein; Validated
Probab=91.02 E-value=6.8 Score=41.00 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=52.3
Q ss_pred HHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 121 KAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 121 ~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+.|.+.|..|... .|+...|-++|..++.-+..-+..+..+|.+.+..+..|..|+++|+.+...
T Consensus 123 ~~L~~~k~~~se~----~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARA----LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888777764 5778889999999888888888888888888888888888888888766543
No 4
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.08 E-value=30 Score=35.74 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhh-----ccCCCC--hhhHHHH
Q 039801 73 RAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLK-----KELDLS--PQVTIML 145 (466)
Q Consensus 73 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~-----~~~~~~--~~~~~l~ 145 (466)
....+.+...|-..+..|+.-|..|.. .+...|.++-.=..+.+.|+..... .+.... -....+.
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~--------~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr 215 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDK--------QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH
Confidence 456677888888888888888888754 3344443332211233333332221 111111 1235566
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASG 201 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~ 201 (466)
+++.++..-+......+.+|+.++...+.+|..+.++..++...=..+++.+..+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777777888888888888888888888888877777777665443
No 5
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=88.84 E-value=0.45 Score=43.70 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=35.3
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEE
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVY 452 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVY 452 (466)
.+..+.+. |..|||.+||-|..... +...+..|.=.+.|||++|+.||+ ++|-
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~------~~~~~~~I~~v~~~GY~~~~rvlRpA~V~ 162 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPD------PDKEPGTIVEVVRPGYRLGGRVLRPAEVV 162 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECS------SSS-CTBEEEECC-EEEETTEEEE-EEEE
T ss_pred CCEecCCC-CCCCCHHHheeheecCc------CCCCcCeEEEEEecCEEECCEEeeeeEEE
Confidence 56667777 99999999999876442 123456788899999999999886 4443
No 6
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.37 E-value=6.2 Score=44.09 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=44.7
Q ss_pred HhHhhHHHHHHHHHHh---------cCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhh
Q 039801 85 AGVTSIKAAYAELQMA---------QNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLM 155 (466)
Q Consensus 85 a~VSslKaAY~qLQ~A---------h~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~ 155 (466)
+.+..+-.||.+|+.| .++|||+.+..- -+=|..|..|+|.|.... +.......++++.-..|
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v----e~Rl~~L~~l~RKY~~~~----~~l~~~~~~~~~el~~L 337 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEV----EERLFALKSLARKYGVTI----EDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHh
Confidence 3345556688888876 469999987653 333556666776666542 22233444555544445
Q ss_pred hHHHHHHHHHHHHHhh
Q 039801 156 KTYEITIKKLEGEAEM 171 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~ 171 (466)
...+.-.+.|+.++..
T Consensus 338 ~~~~~~~~~Le~~~~~ 353 (557)
T COG0497 338 DNSEESLEALEKEVKK 353 (557)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 4555555555554433
No 7
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.00 E-value=5.5 Score=44.62 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 140 QVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 140 ~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
..+.++++-||++|-+..|-..+++|+.++-.|..|+.+||..++.++..-+.|-.+-+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 45678999999999999999999999999999999999999999888776666554433
No 8
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.81 E-value=1.7 Score=41.57 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHhHhhHHHHHHHHHHh-------c-------CCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCC-------h
Q 039801 81 AKLFAGVTSIKAAYAELQMA-------Q-------NPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLS-------P 139 (466)
Q Consensus 81 ~~lFa~VSslKaAY~qLQ~A-------h-------~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~-------~ 139 (466)
.+|++.++.++..=..||.. | .|-.+..|..-+..++.--..|+++. +.+ .... .
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~---r~~-~el~~~L~~~~~ 102 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELY---RSK-GELAQQLVELND 102 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccc-cccccccccccc
Confidence 67888899999888888862 1 22233344444444444333455543 322 1111 1
Q ss_pred hhHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 140 QVTIMLAE-------IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 140 ~~~~l~ae-------i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
....+.++ |.+++..+...+.-++.|+.+++.|+.-+..|+.++..+.-.+..+|+|+.
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333 334444444444445555566666666666666666666666666776654
No 9
>PRK10869 recombination and repair protein; Provisional
Probab=83.70 E-value=15 Score=40.81 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCCCchHHhHhh--HHHHHHHHHhHHHHHHHhhccCCCChh-hHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039801 90 IKAAYAELQMAQNPYNSEAIHLAD--QAVVDELKAISELKRSFLKKELDLSPQ-VTIMLAEIQEQQSLMKTYEITIKKLE 166 (466)
Q Consensus 90 lKaAY~qLQ~Ah~PydpdkI~aAD--~~vVsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~aei~e~q~l~~tye~~~~kLe 166 (466)
+..+.-.|+.. .=|||+-=..++ +-+..+|+.++.-=+.|... .+..|. ...++.++..++.|-|-|...+..+-
T Consensus 246 l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~-~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~ 323 (553)
T PRK10869 246 LYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR-LDLDPNRLAELEQRLSKQISLARKHHVSPEELP 323 (553)
T ss_pred HHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 44555566555 567765322222 22334455554444455542 233343 36677778888888888875544443
Q ss_pred HHHhhhHHHH---HHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 039801 167 GEAEMKESEA---RSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLR-SMTSFVKLLVREME 242 (466)
Q Consensus 167 ~e~~~Kdsei---~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~-Si~~F~K~Li~~M~ 242 (466)
.-.+.-..|+ ......++++...-..+.+++...+ ..++.+|+ +...|.+.+..+|+
T Consensus 324 ~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A-------------------~~LS~~R~~aA~~l~~~v~~~L~ 384 (553)
T PRK10869 324 QHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETA-------------------QKLHQSRQRYAKELAQLITESMH 384 (553)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222 2222233333333333333332211 34444444 48899999999998
Q ss_pred hcCC
Q 039801 243 SANW 246 (466)
Q Consensus 243 ~agw 246 (466)
.-|-
T Consensus 385 ~L~m 388 (553)
T PRK10869 385 ELSM 388 (553)
T ss_pred HcCC
Confidence 7664
No 10
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.88 E-value=75 Score=33.08 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhh-----ccCCC--ChhhHHHHH
Q 039801 74 AVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLK-----KELDL--SPQVTIMLA 146 (466)
Q Consensus 74 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~-----~~~~~--~~~~~~l~a 146 (466)
...+-|...|-..+..|+..|..| ...++.+|.++-.=.++...|+..... .+... +.....+.+
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L--------~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~ 211 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLL--------MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE 211 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHH
Confidence 445666777777777777777665 234444444333222233333332221 01000 111233334
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASG 201 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~ 201 (466)
+|.++..-+...-..+..++.|+....+.|....++..++...=+.+++.++.+.
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444455666666777777777777776666666666666655554
No 11
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=2 Score=41.59 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=38.6
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ 448 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk 448 (466)
.+.-+.+ .|..|||.++|-|..... +...+..|.-.+-.||++|+.||+
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~------~~~~~~tVv~v~qkGY~l~dRVLR 183 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVES------EDVEPNTVVEVLQKGYKLNDRVLR 183 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecC------CCCCCCeEEEEeecCeeeCCEecc
Confidence 4666777 899999999999876532 233456788889999999999997
No 12
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.19 E-value=10 Score=31.33 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
|..|.+.+..---.+..+++||.+.+..-+.+|..|+.+++++...-..|+.|+.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444567788888888888888888888888888887777777764
No 13
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.94 E-value=11 Score=30.67 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
+++.|.+++..+.--|-++..|...+-...-+|..|++.|..+..+-+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999988899999999999999999999999996665544333
No 14
>PRK11637 AmiB activator; Provisional
Probab=77.61 E-value=76 Score=33.82 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
..+..+|...+..++..+..+++++.++.....+|..++++|++.
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555544
No 15
>PRK11637 AmiB activator; Provisional
Probab=76.19 E-value=47 Score=35.42 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
..++.+.++++.++...+....+|+.+...|..++..|+.++.+....-
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l 235 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666677777777777777777777777777776665444433
No 16
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.56 E-value=73 Score=33.15 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHhcCC---CCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHH
Q 039801 74 AVMEALVAKLFAGVTSIKAAYAELQMAQNP---YNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQE 150 (466)
Q Consensus 74 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~P---ydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e 150 (466)
...+.++..|-+.-..|+.--.+||+.+.+ +||+-+..+=+-+..++..+...++..... --+...+.+.|++
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~----~~~l~~l~~~I~~ 243 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL----EEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 445556666677777778888888988877 577776666666665555555554333221 0122334444444
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHH
Q 039801 151 QQSLMKTYEITIKKLEGEAEMKE----SEARSLKRQLDDSI 187 (466)
Q Consensus 151 ~q~l~~tye~~~~kLe~e~~~Kd----sei~~Lr~~L~e~~ 187 (466)
.......+...+.+++..+.... .||..|+.+++-+.
T Consensus 244 ~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 244 LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 44444444444444444433222 26666666664443
No 17
>PRK14150 heat shock protein GrpE; Provisional
Probab=75.46 E-value=2.9 Score=40.53 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=38.4
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
+..+.+ .|..|||.++|-|..... +...+-.|---+-||+++|++||+ ++|-++
T Consensus 138 v~~i~~-~G~~FDP~~HeAv~~~~~------~~~~~gtI~~v~q~GY~l~drvLRpA~V~Vs 192 (193)
T PRK14150 138 VEVVGP-VGEPFNPEVHQAISMQES------EDHEPNTVMMVMQKGYTLNGRLLRPAMVMVS 192 (193)
T ss_pred CeeeCC-CCCCCCHhHcceeeeeCC------CCCCcCEEEEEeeCCeEeCCEEecceEEEeC
Confidence 455554 599999999999865332 122345566788999999999987 456543
No 18
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=74.80 E-value=3.1 Score=37.61 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=36.3
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ 448 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk 448 (466)
.+..+.+. |..|||.++|-|..... +...+-.|.=.+-|||++++.||+
T Consensus 83 Gv~~i~~~-g~~FDp~~Heav~~~~~------~~~~~~~I~~v~~~GY~~~~rvlR 131 (137)
T cd00446 83 GVEKIEPE-GEPFDPNLHEAVMQVPS------PDVEPGTVVEVLQKGYKLGDRVLR 131 (137)
T ss_pred CCEEECCC-CCCCCHHHheeeeeecC------CCCCcCEEEEEeecCeEECCEEec
Confidence 45555554 77999999999865432 123455788899999999999986
No 19
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.68 E-value=10 Score=42.83 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 170 EMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 170 ~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+++|.+|..|+.+|.+....-..|+++|+.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.64 E-value=29 Score=35.83 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=53.7
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHH----HHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 109 IHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYE----ITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 109 I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye----~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
++.-.+.+...+..|.++...... ....|..++..+|.+....+ .-++.|+.++..-+.+|..+|++|+
T Consensus 161 L~~D~~~L~~~~~~l~~~~~~l~~-------~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLDELLPKLRE-------RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555444433 23557777777777766554 3477788888888888888888888
Q ss_pred HHHHhhhhhhhhhcc
Q 039801 185 DSIAFNKSLEKKLNA 199 (466)
Q Consensus 185 e~~~~n~~lekrl~~ 199 (466)
++...-..++.++..
T Consensus 234 el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 234 ELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777666666543
No 21
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=74.55 E-value=36 Score=41.19 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhHhhHHHHHHH-HHHhcCCCCchHHhHh-hHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 039801 75 VMEALVAKLFAGVTSIKAAYAE-LQMAQNPYNSEAIHLA-DQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQ 152 (466)
Q Consensus 75 ~~eali~~lFa~VSslKaAY~q-LQ~Ah~PydpdkI~aA-D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q 152 (466)
.+...+..+|.-..=+-..|.. -...--||||..+..+ ..+...||. .|++..... ........+.++...
T Consensus 104 ~Al~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~---~l~~~~~~~----~~~~~~~~~~~~~~~ 176 (1123)
T PRK11448 104 EALMGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVL---TLKQQLELQ----AREKAQSQALAEAQQ 176 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHH---HHHHHHHHh----hhhhhhhhhhHHHHH
Confidence 3445567777766666555654 2223457888877533 333445555 444443110 001122333344444
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 153 SLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 153 ~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
..++..+.+.++++++..+-+.++..|+++....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 177 QELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666666666666655443
No 22
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.24 E-value=59 Score=31.30 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLA 112 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aA 112 (466)
-..|+.+|.+....+=+||..|....+-|.-.+...+
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3559999999999999999999887766655554333
No 23
>PRK14151 heat shock protein GrpE; Provisional
Probab=74.19 E-value=4.1 Score=39.03 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=39.4
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
.+..+.. .|..|||.++|-|..... +...+-.|.=.+-+|+++|+.||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~------~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQES------ADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCC------CCCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 4555555 699999999999865432 122345677788999999999987 455544
No 24
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.15 E-value=74 Score=28.96 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLM 155 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~ 155 (466)
+..-+.++=..+..++..+-.|+ +++..+..-+.+--.+...++..+.. ....+..+-+|.+.+-
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~-------~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKS-------LEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33344444444455555555553 45555555555444455555444443 1223444445555555
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 156 KTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
..........+-|++.||-||..|+++|.
T Consensus 122 ~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 122 NQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566667788899999999999999884
No 25
>PRK14140 heat shock protein GrpE; Provisional
Probab=72.27 E-value=3.9 Score=39.71 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=37.1
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEe
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYL 453 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYL 453 (466)
+..+- ..|..|||.++|-|..... +...+-.|.-.+-+|+++|++||+ ++|-+
T Consensus 136 V~~i~-~~Ge~FDP~~HEAv~~~~~------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 189 (191)
T PRK14140 136 VEVIE-AVGEQFDPNLHQAVMQDED------EDFESNEVVEELQKGYKLKDRVIRPSMVKV 189 (191)
T ss_pred CEeeC-CCCCCCChHHhccceeeCC------CCCCcCeEEEEeeCCeEeCCEEecCcEEEe
Confidence 34443 4699999999998865332 122345677888999999999997 44543
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=59 Score=36.99 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH-HhHHHHHHHhhccCCCChhhHHHHHHHH
Q 039801 71 RQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK-AISELKRSFLKKELDLSPQVTIMLAEIQ 149 (466)
Q Consensus 71 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~ 149 (466)
++....+.-+.+|=.-++.|++---+|+ ..+.+|+ +|.++++....+.+ ..-||+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------------~eie~L~~~l~~~~r~~~~~~~--------~~rei~ 477 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELK----------------REIEKLESELERFRREVRDKVR--------KDREIR 477 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh--------hhHHHH
Confidence 4446778889999999999998777776 3567777 78888877764311 122333
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 150 EQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 150 e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
. .+-.+.+|+.++..++.+|+.|+.+|.++..-
T Consensus 478 ~-------~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 478 A-------RDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44556999999999999999999999887653
No 27
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.29 E-value=23 Score=36.66 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLV 238 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li 238 (466)
.+-+++-+..+..||+||+.||.+|... -|.+|-.-.+ -+. =.-+|++||+-|+++ |-.|
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RM------rEDWIEEECH-RVE------------AQLALKEARkEIkQL-kQvi 133 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARM------REDWIEEECH-RVE------------AQLALKEARKEIKQL-KQVI 133 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHH-HHH------------HHHHHHHHHHHHHHH-HHHH
Confidence 3344666677778999999999999532 2233322110 000 024688899999886 6677
Q ss_pred HHHHhc
Q 039801 239 REMESA 244 (466)
Q Consensus 239 ~~M~~a 244 (466)
.-||+.
T Consensus 134 eTmrss 139 (305)
T PF15290_consen 134 ETMRSS 139 (305)
T ss_pred HHHHhh
Confidence 777764
No 28
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.78 E-value=7.9 Score=35.00 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 161 TIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 161 ~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
++.+|+++++.+|.|+..|+.+|..+......+..-
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777666655554443
No 29
>PRK14158 heat shock protein GrpE; Provisional
Probab=70.15 E-value=5.7 Score=38.67 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=37.8
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEe
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYL 453 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYL 453 (466)
+..+....|..|||.+.|-|..... +...+-.|.=.+-||+++|++||+ ++|-+
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~~------~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVES------AEQEPNTVVAVFQKGYLLNERLLRPAMVSV 192 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeecC------CCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 4444444699999999998765332 122345678889999999999997 45544
No 30
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.30 E-value=31 Score=34.80 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCC-------chHHhH--hhHHHHHHHHHhH------HHHHHHhhccCCCChh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYN-------SEAIHL--ADQAVVDELKAIS------ELKRSFLKKELDLSPQ 140 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~Pyd-------pdkI~a--AD~~vVsEL~~Ls------~LK~~y~~~~~~~~~~ 140 (466)
...|-.++|...+++-- ..-.--.||- +|-|+. -.++|-+=|+.|- +||+.|..
T Consensus 71 GReLA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee-------- 139 (290)
T COG4026 71 GRELAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEE-------- 139 (290)
T ss_pred hHHHHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH--------
Confidence 34466667776666532 3334456774 333321 1223334455444 55555543
Q ss_pred hHHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 141 VTIMLAEIQE-QQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 141 ~~~l~aei~e-~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+.| ++.+.+..+.+++ ++..+.+|...+++.|..+...|+.||+.+..
T Consensus 140 -------~kekl~E~~~EkeeL~~----eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 140 -------LKEKLEELQKEKEELLK----ELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred -------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 3333434444333 45567778888888888888888888875543
No 31
>PRK00295 hypothetical protein; Provisional
Probab=69.11 E-value=27 Score=28.44 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
+++.|.+++..+.--|-++..|...+-.-..+|..|+++|..+..+-+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788899999988899999999999999999999999997775544443
No 32
>PRK14144 heat shock protein GrpE; Provisional
Probab=68.74 E-value=5.1 Score=39.20 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=38.7
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
+..+.. -|..|||.++|-|..... +...+-.|.=.+-+|+++|++||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPA------PGAPPNSVITVFQKGYKLSDRVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCC------CCCCcCeEEEEeeCCcEECCEEecccEEEec
Confidence 444443 599999999999865432 122356678899999999999997 456554
No 33
>PRK14145 heat shock protein GrpE; Provisional
Probab=68.13 E-value=5.6 Score=38.85 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=36.6
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEEE-EEE
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQS-QVY 452 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIkc-rVY 452 (466)
+.-+.. .|..|||.+.|-|..... +...+-.|.=.+-+|+++|++||+- +|-
T Consensus 141 Ve~I~~-~Ge~FDP~~HEAv~~~~~------~~~~~gtVv~V~qkGY~l~dRVLRPA~V~ 193 (196)
T PRK14145 141 VKEIEA-EGQIFDPYKHHAVMQEEV------EGKQPNEIIEVFQKGYYLKDKVIRPSLVK 193 (196)
T ss_pred CEEeCC-CCCCCCchhhheeeeeCC------CCCCcCEEEEEeeCCcEeCCEeeccceEE
Confidence 334443 599999999998865332 1223456778899999999999973 443
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.99 E-value=58 Score=31.96 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 149 QEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 149 ~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
.|+|..+..-+..+.+|+.|.+.=..|+..++.+++++...|..+.+.+
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666777777667777777777777777776666543
No 35
>PRK14161 heat shock protein GrpE; Provisional
Probab=67.52 E-value=7.3 Score=37.41 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=38.9
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
+..+....|..|||.+.|-|..... +...+-.|.=.+-+|+++|+.||+ ++|-++
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~------~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Va 175 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEH------PDHAPNSIITLMQSGYKIRDRLLRPATVQVV 175 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCC------CCCCcCEEEEEeeCCcEeCCEeecCceEEeC
Confidence 3444444599999999998876432 122345677889999999999987 455544
No 36
>PRK14148 heat shock protein GrpE; Provisional
Probab=67.00 E-value=6.1 Score=38.54 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=38.4
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
+..+.. .|..|||.+.|-|..... +.-.+-.|.=.+-||+++|+.||+ ++|-++
T Consensus 139 v~~I~~-~G~~FDP~~HEAv~~~~~------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va 193 (195)
T PRK14148 139 VEELDP-KGEKFDPNLHEAMAMIPN------PEFEDNTIFDVFQKGYMLNGRIVRAAKVVIV 193 (195)
T ss_pred CEEeCC-CCCCCChhHhheeeeeCC------CCCCcCEEEEEeeCCcEeCCEeeeccEEEeC
Confidence 444544 499999999999876442 122345577888999999999987 455543
No 37
>PRK14154 heat shock protein GrpE; Provisional
Probab=66.85 E-value=7.6 Score=38.28 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=38.8
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEe
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYL 453 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYL 453 (466)
.+..+....|..|||.+.|-|..... +...+-.|.=.+-+|+++++.||+ ++|-+
T Consensus 151 GVe~I~~~~G~~FDP~~HEAv~~~~~------~~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 151 GVQVINPNPGDPFDPALHEAMSVQAV------PDAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred CCEEecCCCCCCCChhHhheeeeeCC------CCCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 34445455699999999999865332 112234688889999999999997 45544
No 38
>PRK14160 heat shock protein GrpE; Provisional
Probab=66.54 E-value=7.4 Score=38.43 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=35.5
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEEE-EEEe
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQS-QVYL 453 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIkc-rVYL 453 (466)
+.-+.. .| .|||.+.|-|..... +...+-.|.-.+-||+++|+.||+. +|-+
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~------~e~~~gtVveV~qkGY~l~dRVLRpA~V~V 209 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVED------ENYGENEIVEVFQKGYKRGDKVIRYSMVKV 209 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCC------CCCCcCeEEEEeeCCcEeCCEeeecceEEe
Confidence 333443 36 899999998876432 1122446777899999999999973 4543
No 39
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.38 E-value=12 Score=39.41 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASG 201 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~ 201 (466)
.|-+++|.+..+.-....-...+...+.-||.|...|.++...=-.=++.|..-|..|+.|.+|+.-.-+.|
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL-------- 220 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL-------- 220 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHhhhh-CCCccccCCCcchhHHHHHHHHH
Q 039801 202 PISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLVREMESA--NWDLDLAAKVI-EPEAIFTKPSHRYFVFQSFVCKT 278 (466)
Q Consensus 202 ~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M~~a--gwdl~~aa~~i-~p~v~~~k~~h~kyalEA~v~~~ 278 (466)
|++..-+.+.+-..-. .+.+.-.+-|+++++.. ...-..+|+++ ..+-..+..+-..|++| ||.
T Consensus 221 -------LQle~~~~e~~p~~~~---~~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~svhnysLd---cRr 287 (401)
T PF06785_consen 221 -------LQLESDMKESMPSTPS---PSSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESSVHNYSLD---CRR 287 (401)
T ss_pred -------HHhhhhhhhcCCCCCc---chhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCccccchHH---HHH
Q ss_pred HhcCCCCCCCCC
Q 039801 279 MLEGFNFPNFSP 290 (466)
Q Consensus 279 MF~gFe~~~F~~ 290 (466)
+|++-.+++-++
T Consensus 288 LfDsLreEnlgm 299 (401)
T PF06785_consen 288 LFDSLREENLGM 299 (401)
T ss_pred HHhhhcccccce
No 40
>PRK04406 hypothetical protein; Provisional
Probab=66.04 E-value=31 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.+++.|.+++..+.--|.++..|...+-.-..+|..|+++|..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999888999999999999999999999999977644
No 41
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.96 E-value=1.7e+02 Score=30.30 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH-HhHHHHHHHhh--ccC-CCChhhHHHHHHHH
Q 039801 74 AVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK-AISELKRSFLK--KEL-DLSPQVTIMLAEIQ 149 (466)
Q Consensus 74 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~-~Ls~LK~~y~~--~~~-~~~~~~~~l~aei~ 149 (466)
..++.-+.++-..+.....+..+.|..|-=+||+.=..+-.-.+++|+ .|.+++..+.. ... +.+|+.-.+.++++
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 456667777888888889999999999999999885555555677776 56666555442 222 33677766677766
Q ss_pred HHHhhhh
Q 039801 150 EQQSLMK 156 (466)
Q Consensus 150 e~q~l~~ 156 (466)
.++..++
T Consensus 253 ~l~~~i~ 259 (362)
T TIGR01010 253 SLRKQID 259 (362)
T ss_pred HHHHHHH
Confidence 6666553
No 42
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.83 E-value=1.6e+02 Score=32.72 Aligned_cols=136 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHhcCCCCchHHhHhhHH---HHHHHHHhHHHHHHHhhccCCCChhh-HHHHHHHHHHHhhhhHHHHHHH
Q 039801 88 TSIKAAYAELQMAQNPYNSEAIHLADQA---VVDELKAISELKRSFLKKELDLSPQV-TIMLAEIQEQQSLMKTYEITIK 163 (466)
Q Consensus 88 SslKaAY~qLQ~Ah~PydpdkI~aAD~~---vVsEL~~Ls~LK~~y~~~~~~~~~~~-~~l~aei~e~q~l~~tye~~~~ 163 (466)
+.+..+--.|+.. |||.- ...-+. +..+|+.++.--+.|.. ..+..|.. ..+..++..++.+.+.|...+.
T Consensus 251 ~~l~~~~~~l~~~---~d~~~-~~~~~~l~~~~~~l~d~~~~l~~~~~-~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e 325 (563)
T TIGR00634 251 EGLGEAQLALASV---IDGSL-RELAEQVGNALTEVEEATRELQNYLD-ELEFDPERLNEIEERLAQIKRLKRKYGASVE 325 (563)
T ss_pred HHHHHHHHHHHHh---hhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3444455555555 66543 333222 23445544444445554 23444443 5677778888888888876666
Q ss_pred HHHHHHhhhHHHHHHHHH---HHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q 039801 164 KLEGEAEMKESEARSLKR---QLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFS-LRSMTSFVKLLVR 239 (466)
Q Consensus 164 kLe~e~~~Kdsei~~Lr~---~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A-~~Si~~F~K~Li~ 239 (466)
++-...+.-..++..|.. .++++...-..+++++.. --..++.. .++...|++.+..
T Consensus 326 ~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~-------------------~a~~Ls~~R~~~a~~l~~~v~~ 386 (563)
T TIGR00634 326 EVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK-------------------AAVALSLIRRKAAERLAKRVEQ 386 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 655554444443333322 222222222223333221 12344445 3457888888888
Q ss_pred HHHhcCCC
Q 039801 240 EMESANWD 247 (466)
Q Consensus 240 ~M~~agwd 247 (466)
+|+.-|+.
T Consensus 387 ~l~~L~m~ 394 (563)
T TIGR00634 387 ELKALAME 394 (563)
T ss_pred HHHhCCCC
Confidence 88876653
No 43
>PRK14147 heat shock protein GrpE; Provisional
Probab=65.79 E-value=5.9 Score=37.77 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=38.1
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEEE-EEEe
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQS-QVYL 453 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIkc-rVYL 453 (466)
.+..+.. .|..|||.+.|-|..... +...+-.|.=.+-+|+++|+.||+. +|-+
T Consensus 114 Gv~~i~~-~G~~FDP~~HeAv~~~~~------~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~V 168 (172)
T PRK14147 114 GLTLLDP-VGQPFNPEHHQAISQGEA------EGVAPGHVVQVFQKGYLLNERLLRPALVVV 168 (172)
T ss_pred CCEEeCC-CCCCCChHHhceeeeecC------CCCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 3455554 599999999999865432 1223446778899999999999974 4444
No 44
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.55 E-value=35 Score=28.07 Aligned_cols=49 Identities=24% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
+.+++.|.+++..+.=-|.++..|...+-.-..+|..|+++|..+..+=
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999988899999999999999999999999997775533
No 45
>PRK04325 hypothetical protein; Provisional
Probab=65.29 E-value=33 Score=28.37 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
.+...|.+++..+.=-|-++..|...+-.-.-+|..|+++|..+..+-
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999988899999999999999999999999997765533
No 46
>PRK00736 hypothetical protein; Provisional
Probab=65.25 E-value=34 Score=27.84 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKS 192 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~ 192 (466)
+.+.|.+++..+.--|-++..|...+-.-.-+|..|+++|..+..+-+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888998889999999999999999999999999777554433
No 47
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.22 E-value=1.4e+02 Score=33.26 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHhHhhHHHHHHHHHHh---------cCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 039801 83 LFAGVTSIKAAYAELQMA---------QNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQS 153 (466)
Q Consensus 83 lFa~VSslKaAY~qLQ~A---------h~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ 153 (466)
+-.....+..+|.+|+.+ ..=|||+.+.. +-+.|..+-.|++.|.... ........+++..-.
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s~----e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGASV----EEVLEYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 344555677777777754 56788888665 4556667777777776421 111111222222222
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 154 LMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 154 l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
.+..++..+++|+.++..-..+...+-.+|..
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444555555555444444444444433
No 48
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.75 E-value=46 Score=34.62 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHhHHHHHHHhhc-----cCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 121 KAISELKRSFLKK-----ELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 121 ~~Ls~LK~~y~~~-----~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
..|+++-..|++- ++|. ..+.|.=+|+-+...|...|.++-.|+.+++.|-.+..++|+.++.+...-..|-.
T Consensus 84 ~~l~evEekyrkAMv~naQLDN--ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDN--EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888889873 3333 34667777777777777788888888999988888888888888877776655443
Q ss_pred h
Q 039801 196 K 196 (466)
Q Consensus 196 r 196 (466)
.
T Consensus 162 ~ 162 (302)
T PF09738_consen 162 Q 162 (302)
T ss_pred H
Confidence 3
No 49
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.47 E-value=70 Score=35.51 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLM 155 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~ 155 (466)
.+..+--+|.-+-.+|.---.| -++|+.|-++- .++-.|.+.|+.-..|... +.+-+.-..+.+
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l--------~e~i~ea~k~s----~~i~~l~ek~r~l~~D~nk----~~~~~~~mk~K~ 325 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNL--------YEKIQEAMKIS----QKIKTLREKWRALKSDSNK----YENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH----HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHH
Confidence 3445555666665555433332 23444433221 1233456666654444442 222233334455
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 156 KTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+.|--.+++|+.++..|++||..|+.+.+++...
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5566777999999999999999999999998764
No 50
>PRK14141 heat shock protein GrpE; Provisional
Probab=64.40 E-value=6.8 Score=38.61 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=40.3
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecC
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPV 456 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~ 456 (466)
+..+.. .|..|||.+.|-|..... +.-.+-.|.=.+-+|++++++||+ ++|-++..
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~~------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk~ 192 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVPN------PDVPNNTVVQVVQAGYTIGERVLRPAMVGVAKG 192 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeecC------CCCCcCEEEEEeeCCcEeCCEeecccEEEECCC
Confidence 444443 599999999998864321 122345677889999999999997 67877763
No 51
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.26 E-value=24 Score=32.87 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEA--RSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei--~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
|..+|.+++.-++.....++.|++|+..=-++. ..|+..+.++...+..|+.||.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333322 3445555555555555555544
No 52
>PRK14162 heat shock protein GrpE; Provisional
Probab=64.15 E-value=7.4 Score=37.92 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=36.7
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEe
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYL 453 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYL 453 (466)
+..+.. .|..|||.+.|-|...... ....+-.|.=.+-+|+++|+.||+ ++|-+
T Consensus 138 V~~I~~-~G~~FDP~~HEAv~~~~~~-----~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14162 138 VTEIKA-DGEKFDPTLHQAVQTVAAE-----NDDQKDHVVQVLQKGYQYKDRTLRPAMVVV 192 (194)
T ss_pred CEEeCC-CCCCCChhHhhhheeecCC-----CCCCcCEEEEEeeCCcEeCCEeeecceEEe
Confidence 344443 5999999999998653211 112244566788999999999997 45544
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.89 E-value=1.7e+02 Score=31.77 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHH
Q 039801 71 RQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQE 150 (466)
Q Consensus 71 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e 150 (466)
.+.......+..|=..+..+..+..++|.... . .++ -.+++.++++..... ...+.+
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-----~---~~~----~~~~i~el~~~i~~~-----------~~~i~~ 355 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMD-----E---FNE----QSKKLLELKNKISTN-----------KQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHH----HHHHHHHHHHHHHHH-----------HHHHHH
Confidence 34455666777777777888888877776552 1 111 134555555444431 222334
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 151 QQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 151 ~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
...-.+..+.-+.+|+.+......++..|..+|+++......+++...
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777777777777777777777777777666666543
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.74 E-value=20 Score=33.31 Aligned_cols=78 Identities=26% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCchHHhHhhHHHHHHHH-HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 039801 94 YAELQMAQNPYNSEAIHLADQAVVDELK-AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMK 172 (466)
Q Consensus 94 Y~qLQ~Ah~PydpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~K 172 (466)
|.-.|..=---+++.+..-|.- +.+|+ .|.+|+..... +.+++..+.+.+ +..+|..++..-
T Consensus 59 Y~~~Q~~~~~~s~eel~~ld~e-i~~L~~el~~l~~~~k~-----------l~~eL~~L~~~~-----t~~el~~~i~~l 121 (169)
T PF07106_consen 59 YFANQDELEVPSPEELAELDAE-IKELREELAELKKEVKS-----------LEAELASLSSEP-----TNEELREEIEEL 121 (169)
T ss_pred EeeCccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCC-----CHHHHHHHHHHH
Confidence 5555554333456667666665 45554 45555533332 333333333322 223444455555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039801 173 ESEARSLKRQLDDSIA 188 (466)
Q Consensus 173 dsei~~Lr~~L~e~~~ 188 (466)
..||..|..+|+.+.+
T Consensus 122 ~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 122 EEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555555555544
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.85 E-value=64 Score=30.82 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
.|..+|..+...++.....+..|+.|+.+=-.+...|.+++..+...|..|-+|.-
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677777889999999999999999999999999999887753
No 56
>PRK10325 heat shock protein GrpE; Provisional
Probab=62.48 E-value=7.5 Score=37.81 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=38.5
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
+..+. ..|..|||.+.|-|...... +. .+-.|.=-+-+|+++|++||+ ++|-++.
T Consensus 139 v~~i~-~~G~~FDP~~HEAv~~~~~~-----~~-~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk 194 (197)
T PRK10325 139 VEVIA-ETNVPLDPNVHQAIAMVESD-----DV-APGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_pred CeeeC-CCCCCCChhHhceeeeeCCC-----CC-CcCeEEEEeeCCcEeCCEeccCceEEeCC
Confidence 44444 36999999999998653321 12 234455688899999999997 5676654
No 57
>PRK14163 heat shock protein GrpE; Provisional
Probab=61.66 E-value=13 Score=36.94 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=41.4
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecCCc
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPVNV 458 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~~~ 458 (466)
+..+.. .|..|||.+-|-|..... +...+-.|.=.+-+|+++|++||+ ++|-++..+.
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~------~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~~~ 190 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYA------PDVTETTCVAILQPGYRIGERTIRPARVAVAEPQP 190 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecC------CCCCcCEEEEEeeCCcCcCCEeccCceEEECCCCC
Confidence 444443 699999999998865332 112345677889999999999997 6788776533
No 58
>PRK02119 hypothetical protein; Provisional
Probab=61.40 E-value=48 Score=27.41 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.++++|.+++..+.--|-++..|...+-.-..+|..|+++|..+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999888999999999999999999999999876644
No 59
>PRK00846 hypothetical protein; Provisional
Probab=60.72 E-value=51 Score=27.83 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
.+.+.|.+++..+.--|.++..|...+-.-..+|..|+++|.-+..+=+.++
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999888999999999999999999999999976665444443
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=60.65 E-value=66 Score=31.26 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.....||.-++..++-+......++..++.+|.||..++.+|..+..
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999999887655
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.32 E-value=36 Score=39.15 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhh---hhCCCcccc
Q 039801 220 VQFLHFSLRSMTSFVKLLVREMESANWDLDLAAK---VIEPEAIFT 262 (466)
Q Consensus 220 ~~~l~~A~~Si~~F~K~Li~~M~~agwdl~~aa~---~i~p~v~~~ 262 (466)
-.+|.+|++-+...-..++..=+.- -||-+.+. ++-|++.|.
T Consensus 621 fsaLg~akrq~ei~~~~~~~~d~ei-~~lk~ki~~~~av~p~~~~~ 665 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQLRKKDKEI-EELKAKIAQLLAVMPSDSYC 665 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCccccc
Confidence 3789999999988888777543321 12233222 346776664
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.26 E-value=40 Score=33.09 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=8.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 039801 165 LEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 165 Le~e~~~Kdsei~~Lr~~L~e~ 186 (466)
|+..+...+.+|..|+++.+++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333333
No 63
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=60.24 E-value=3.5 Score=35.45 Aligned_cols=16 Identities=56% Similarity=1.009 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhccC
Q 039801 376 MARRVWLLHRLAFSLD 391 (466)
Q Consensus 376 mAksVWlLH~LAfSf~ 391 (466)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 7999999999998865
No 64
>PRK14153 heat shock protein GrpE; Provisional
Probab=59.63 E-value=12 Score=36.44 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=40.4
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
.+..+.+. |..|||.++|-|..... +.-.+-.|.=-+-+|++++++||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~------~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVET------SEVPDNTIVDVCKPGYALNSKVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCC------CCCCcCEEEEEeeCCcEeCCEEeeCcEEEECC
Confidence 45556654 99999999998865332 122345677788999999999987 5677665
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.56 E-value=39 Score=31.21 Aligned_cols=55 Identities=29% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
|.++....+.....++..++.|+.+...++-||..|..++..+...--.++.+|.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666777777777777777777777777777777766665555555544
No 66
>PRK14155 heat shock protein GrpE; Provisional
Probab=59.52 E-value=12 Score=36.85 Aligned_cols=58 Identities=9% Similarity=0.162 Sum_probs=42.5
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecC
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPV 456 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~ 456 (466)
.+..+.+..|..|||.+.|-|..... +...+-.|.=.+-+|++++++||+ ++|-++.+
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~------~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 172 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPS------TEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAK 172 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecC------CCCCcCeEEEEeeCCeEeCCEeeccceEEECCC
Confidence 45555555799999999998765332 122355677888999999999997 67877764
No 67
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.99 E-value=38 Score=29.31 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.|+..+++|+.++..--.|+..|+.+|+-...
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999976554
No 68
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.84 E-value=41 Score=31.86 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.+.++..+++|+.|+..++.|++.||++.+.+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777888888888888887766543
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=57.91 E-value=15 Score=36.15 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
..++..++|+-.|++||..||..|.++...+...+.++.
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~ 55 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ 55 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 346788889999999999999999888777766666544
No 70
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=57.73 E-value=45 Score=33.35 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
|-.++-|+++++.||.+|..|.+.|.+++.
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556688999999999999999999987754
No 71
>PRK14139 heat shock protein GrpE; Provisional
Probab=57.37 E-value=12 Score=36.30 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=39.4
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
.+..+.. .|..|||.++|-|..... +. .+-.|.=.+-+|+++|+.||+ ++|-++.
T Consensus 128 Gv~~I~~-~G~~FDP~~HEAv~~~~~------~~-~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 183 (185)
T PRK14139 128 RVVEINP-VGEKFDPHQHQAISMVPA------EQ-EPNTVVAVLQKGYTIADRVLRPALVTVAA 183 (185)
T ss_pred CCceeCC-CCCCCChHHhheeeeecC------CC-CcCEEEEEeeCCcEeCCEeccCceEEeCC
Confidence 3444555 599999999999865431 11 245688889999999999997 4565543
No 72
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.03 E-value=1.4e+02 Score=30.60 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=60.7
Q ss_pred HHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccC-----------CCChh------hHHHHHHHHH----------
Q 039801 98 QMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKEL-----------DLSPQ------VTIMLAEIQE---------- 150 (466)
Q Consensus 98 Q~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~-----------~~~~~------~~~l~aei~e---------- 150 (466)
+.||+=-||.++=+||-.-|.||-+++.+=....+... +.++. ...|.++|-.
T Consensus 62 tKa~IKLN~KkLY~ADGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~ 141 (267)
T PF10234_consen 62 TKARIKLNPKKLYQADGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLG 141 (267)
T ss_pred HHhheeecHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999998444444321 11110 0112222211
Q ss_pred ---------HHhhhhHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 151 ---------QQSLMKTYEI--TIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 151 ---------~q~l~~tye~--~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
++.+-++.|+ +=+-|+..+..=..+|..+++.|+.+.+....|+.||..
T Consensus 142 kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 142 KEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred chHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222221 123344455566677778888888777777666655543
No 73
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.57 E-value=78 Score=32.90 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHHhhh---hHHHHH--HHHHHHHHhhhHH--HHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLM---KTYEIT--IKKLEGEAEMKES--EARSLKRQLDDS 186 (466)
Q Consensus 145 ~aei~e~q~l~---~tye~~--~~kLe~e~~~Kds--ei~~Lr~~L~e~ 186 (466)
+.||.|+++-| +.=||- --+.|+|+..|++ ||..||+-++-.
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655433 333333 3467788887776 788888777543
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.70 E-value=57 Score=37.63 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEIT---IKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~---~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.||=.--+.|...+..+ ++-++.+++.||.||..||.||+++..
T Consensus 611 saEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 611 SAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34433345555555444 556678999999999999999999876
No 75
>PRK14157 heat shock protein GrpE; Provisional
Probab=55.61 E-value=12 Score=37.51 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=37.1
Q ss_pred CCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 401 RNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 401 rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
.|..|||.+-|-|..... +...+-.|.=.+-+|+++|++||+ ++|-++.
T Consensus 175 ~Ge~FDP~~HEAV~~~~~------~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak 224 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPD------PDAEKETVDTVVEAGYRIGDRVIRAARVVVAS 224 (227)
T ss_pred CCCCCChhhhceeeeecC------CCCCcCEEEEEeeCCceeCCEeccCceEEeCC
Confidence 599999999998865332 122356788889999999999997 5666654
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.03 E-value=1.7e+02 Score=28.99 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
...|.++++.+..-+...+.-.++|++.+.....+|..|.++++++..-...+
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776666766777777788888888888888888887776655443
No 77
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.36 E-value=61 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 039801 178 SLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 178 ~Lr~~L~e~~~~n~~lekr 196 (466)
.+..+|.++..+|+.|+..
T Consensus 29 ~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.27 E-value=2.5e+02 Score=30.50 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIK 163 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~ 163 (466)
+..+++++++-++.++..+.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 79
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.12 E-value=1.2e+02 Score=24.95 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 116 VVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 116 vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
.-.+|..|-..+..|...-.... . +.-.+.+...+.-+...+..+..++.++..-+.++..+++.|-++...-+.++
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777744221111 1 23345566667777777778888888888888888888888887777666654
No 80
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.76 E-value=90 Score=32.99 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=47.6
Q ss_pred HhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHH
Q 039801 85 AGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKK 164 (466)
Q Consensus 85 a~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~k 164 (466)
..+..+..-|-+||..|.= ...-|+.++++.+.-. +.|.-|+..++.--..+++
T Consensus 4 eEW~eL~~efq~Lqethr~------------Y~qKleel~~lQ~~C~--------------ssI~~QkkrLk~L~~sLk~ 57 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRS------------YKQKLEELSKLQDKCS--------------SSISHQKKRLKELKKSLKR 57 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888732 3445556666653322 2344444455555556666
Q ss_pred HHHHHhhh-HHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 165 LEGEAEMK-ESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 165 Le~e~~~K-dsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
++...... ...|..|++++.+....=..+|.-+
T Consensus 58 ~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 58 CKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred hccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 65543332 3355666666666554444555443
No 81
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.11 E-value=97 Score=30.62 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
....++++++.-+.+-..-++.++.|+..+.+|+..||+++..+......|-.-+..
T Consensus 49 ~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 49 NKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 356678888888888888999999999999999999999999988877777655444
No 82
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.89 E-value=1.1e+02 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHh
Q 039801 98 QMAQNPYNSEAIHLADQAVVDELKAISELKRSFL 131 (466)
Q Consensus 98 Q~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~ 131 (466)
|....|..||+.+.+|.+.=.=-.+...||+.-.
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~ 71 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLV 71 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999988776677777765444
No 83
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.36 E-value=1.9e+02 Score=30.20 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.6
Q ss_pred HHHhcCCCCchHHhHhhHHHHHHHHHhHHH
Q 039801 97 LQMAQNPYNSEAIHLADQAVVDELKAISEL 126 (466)
Q Consensus 97 LQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~L 126 (466)
+|.|-+--+|-|+=+||..-|+||.+.-.|
T Consensus 2 ~~~a~i~~np~kly~a~~~~~~el~~~~~l 31 (338)
T KOG3647|consen 2 VTKAAIRINPRKLYAAAAVTAAELQKVTRL 31 (338)
T ss_pred CcchhhccCHHHHHHHhHHHHHHHHHHHHH
Confidence 466778889999999999999999988877
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.16 E-value=2.8e+02 Score=27.84 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
..++++.+.........+..++.|+..--..|..|+.+|+.+...|..|+++|..
T Consensus 194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 3344455555555555556666666666667777777777788888888888754
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.79 E-value=1.9e+02 Score=31.65 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
.|+++|.++..-+++-+..+.+.+.++...+..|..+...|
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 34444444444444444444444444444444444433333
No 86
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=47.48 E-value=3.4e+02 Score=31.94 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
..++.+++..+...+..+..|+.++.....++..+++++.++......++
T Consensus 419 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 468 (1164)
T TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555554444433333
No 87
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.03 E-value=2.5e+02 Score=26.27 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=14.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 039801 152 QSLMKTYEITIKKLEGEAEMKESEARSLK 180 (466)
Q Consensus 152 q~l~~tye~~~~kLe~e~~~Kdsei~~Lr 180 (466)
++..+.++.-++.++........++..|+
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544444
No 88
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=46.84 E-value=42 Score=38.10 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCC-CCccchhhhc-ccCCHHHHHHHHHHHHHHHHHHHHH
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASG-PISILENVQL-SALSTSHFVQFLHFSLRSMTSFVKL 236 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~-~ls~~~~l~~-s~~sp~~F~~~l~~A~~Si~~F~K~ 236 (466)
...+.+++..+..=+.++..+++.++..+.+|..|+....... .+..+.++-- -.+++++...+ .. .+|...
T Consensus 43 ~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L-~~-----~~l~~~ 116 (701)
T PF09763_consen 43 LAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEAL-RN-----ASLSSP 116 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-hc-----CCCCCc
Confidence 3344666666667777777788888888888877775422211 1122332211 12445444333 32 234333
Q ss_pred H-HHHHHhcCCCHHHHhhhhCCCc
Q 039801 237 L-VREMESANWDLDLAAKVIEPEA 259 (466)
Q Consensus 237 L-i~~M~~agwdl~~aa~~i~p~v 259 (466)
= +..+++|.+.|..|++.|.|..
T Consensus 117 ~~l~~~e~a~~~L~~Al~~i~~~~ 140 (701)
T PF09763_consen 117 DGLEKIEEAAEALYKALKAIRPDL 140 (701)
T ss_pred ccHHHHHHHHHHHHHHHHhccccc
Confidence 3 5556777777888888876643
No 89
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=46.78 E-value=5.1e+02 Score=29.86 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFL 223 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l 223 (466)
|.++|.++|..+..-..-++.++.|+...|.++.+-..++.++..+.-- -..|-+..
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~L-----------------------L~Ay~q~c 140 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLL-----------------------LEAYSQQC 140 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 4445555555554444455666666666666666666555555544433 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039801 224 HFSLRSMTSFVKLLVREMES 243 (466)
Q Consensus 224 ~~A~~Si~~F~K~Li~~M~~ 243 (466)
....+..+...|-|-.+.+.
T Consensus 141 ~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 141 EEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566655555555544443
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.75 E-value=74 Score=34.68 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 121 KAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 121 ~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
++|...++-+-+ +..+|.+++.-....+..+++|+.++..=+.+|......|.++..
T Consensus 38 ~~l~q~q~ei~~-----------~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 38 KQLKQIQKEIAA-----------LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 566666544433 344455554444444444444444444444444333333333333
No 91
>PRK14159 heat shock protein GrpE; Provisional
Probab=46.69 E-value=25 Score=33.76 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEEE-EEEe
Q 039801 402 NCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQS-QVYL 453 (466)
Q Consensus 402 G~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIkc-rVYL 453 (466)
| .|||.+.|-|..... +...+-.|.-.+-+|+++|++||+. +|-+
T Consensus 129 G-~FDP~~HEAv~~~~~------~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 174 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDS------ENHQSGEVVQVLQKGYKIADRVIRPTKVSV 174 (176)
T ss_pred C-CCChHHhhhhheeCC------CCCCcCeEEEEeeCCcEeCCEeeecceeEe
Confidence 6 699999999865432 1223456778899999999999973 4433
No 92
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=46.62 E-value=98 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=14.8
Q ss_pred HHHHHhhhH-HHHHHHHHHHHHHHHhhhhhh
Q 039801 165 LEGEAEMKE-SEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 165 Le~e~~~Kd-sei~~Lr~~L~e~~~~n~~le 194 (466)
|+.+-+..| ..+..|-+|.+-+...|.-|+
T Consensus 73 LkleKeTADltH~~~L~~K~~~Lq~m~shLe 103 (277)
T PF15003_consen 73 LKLEKETADLTHPDYLAEKCEALQSMNSHLE 103 (277)
T ss_pred HHhhcchHhhhCHHHHHHHHHHHHHHHHHHH
Confidence 333333444 355555556555555554444
No 93
>PRK14146 heat shock protein GrpE; Provisional
Probab=46.42 E-value=19 Score=35.55 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCCcccccccccccccccccccccCCCCCceEEEEecCCceeCC----eEEE-EEEEeec
Q 039801 401 RNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGK----SLIQ-SQVYLSP 455 (466)
Q Consensus 401 rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~----tVIk-crVYLs~ 455 (466)
.|..|||.++|-|..... +.-.+-.|.-.+-+|+++|+ .||+ ++|-++.
T Consensus 159 ~G~~FDP~~HeAv~~~~~------~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak 212 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEG------DQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGK 212 (215)
T ss_pred CCCCCChhHhceeeeecC------CCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCC
Confidence 699999999999876432 12234556688899999998 4776 5676664
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.18 E-value=1.9e+02 Score=29.69 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
..+..+++++..++..||.+.+.|+++...++.=|..|+.+.+.....-..|++
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~ 218 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEE 218 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 447778899999999999999999999999999999999999888877666663
No 95
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.54 E-value=4.6e+02 Score=28.98 Aligned_cols=120 Identities=22% Similarity=0.293 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhc-cCCCChhh---HHHHH
Q 039801 71 RQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKK-ELDLSPQV---TIMLA 146 (466)
Q Consensus 71 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~-~~~~~~~~---~~l~a 146 (466)
.+++.-|.++..|=++||-.+. -+|+|+|- +..|-+-|-.|+.+|-...+..... .+...+|. -.+-+
T Consensus 338 ~~~q~sE~ll~tlq~~iSqaq~-~vq~qma~-------lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ 409 (542)
T KOG0993|consen 338 EERQHSEDLLVTLQAEISQAQS-EVQKQMAR-------LVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPA 409 (542)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchh
Confidence 4556677788888999998886 58899884 6777888889999999999888864 33444442 22334
Q ss_pred HHHHHHhhhhHH-HHHHHHHHHH-HhhhH--HHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 147 EIQEQQSLMKTY-EITIKKLEGE-AEMKE--SEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 147 ei~e~q~l~~ty-e~~~~kLe~e-~~~Kd--sei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
-+.+++.+++-| +.....|.+. .-+.| .||..|++.|+........||..+.
T Consensus 410 ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 410 AVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444 3333333332 11111 3889999999988887777877654
No 96
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.43 E-value=1.8e+02 Score=33.01 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
=+....+....|+-.+++|+.|+..|.+||..|+++-+++..
T Consensus 281 y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 281 YVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778889999999999999999999999988865
No 97
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.05 E-value=82 Score=34.70 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+.+|+.....++.+-+.++.++.++|.+|..|.++|.++.-
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 45566667778888888899999999999999999998865
No 98
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=44.20 E-value=76 Score=29.76 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHHHhh
Q 039801 116 VVDELKAISELKRSFLK 132 (466)
Q Consensus 116 vVsEL~~Ls~LK~~y~~ 132 (466)
++.-..+++.|+++|..
T Consensus 18 ~~~~~~kl~kl~r~Y~~ 34 (151)
T PF14584_consen 18 IIILNIKLRKLKRRYDA 34 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567899999999987
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.34 E-value=28 Score=38.97 Aligned_cols=95 Identities=20% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 039801 167 GEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRS---MTSFVKLLVREMES 243 (466)
Q Consensus 167 ~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~S---i~~F~K~Li~~M~~ 243 (466)
.|+..--+.|..||.+|.++...|..|+++|..-.. .++ -.-..|.+.|..=-.. +|.=|..|+.+|+.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~--ql~------e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY--QLD------EDQRSFEQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHh--hhh------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788999999999999999999999865211 111 1223555555443333 45556666666653
Q ss_pred cCCCHHHHhhhhCCCccccCCCcchhHHHHHHHHHHhcCCCCCC
Q 039801 244 ANWDLDLAAKVIEPEAIFTKPSHRYFVFQSFVCKTMLEGFNFPN 287 (466)
Q Consensus 244 agwdl~~aa~~i~p~v~~~k~~h~kyalEA~v~~~MF~gFe~~~ 287 (466)
|.+.--+| =.|--+-|.|.+|=+...
T Consensus 368 ----LlD~ki~L--------------d~EI~~YRkLLegee~r~ 393 (546)
T KOG0977|consen 368 ----LLDTKISL--------------DAEIAAYRKLLEGEEERT 393 (546)
T ss_pred ----hhchHhHH--------------HhHHHHHHHHhccccCCC
Confidence 11100011 135556789999988875
No 100
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.58 E-value=1.2e+02 Score=29.03 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+.+|+.++..+|..|..+-.+|.++...
T Consensus 31 I~~L~~e~~~ld~~i~~~~~~L~~~~~~ 58 (188)
T PF10018_consen 31 IQQLRAEIEELDEQIRDILKQLKEARKE 58 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888887777777777666553
No 101
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.52 E-value=65 Score=35.62 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
...+++|+.|+..++|+..|+.+++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666677777777777773
No 102
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=42.39 E-value=64 Score=30.56 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 169 AEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 169 ~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
.+.||.|...|..+|.+...+.+.||++|..
T Consensus 100 AkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~e 130 (152)
T PF11500_consen 100 AKKKDAEAMRLAEKLKEEQEKVAEMERHVTE 130 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999998765
No 103
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=41.84 E-value=2.2e+02 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 153 SLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 153 ~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
..+..|-..++.+++++++.+.|+.+|.+.-.....+.
T Consensus 40 ~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~ 77 (162)
T PF05565_consen 40 EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRI 77 (162)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444333333
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.80 E-value=3.9e+02 Score=27.09 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=59.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCC--hhhHHHHHHHHHHHhhhh
Q 039801 79 LVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLS--PQVTIMLAEIQEQQSLMK 156 (466)
Q Consensus 79 li~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~--~~~~~l~aei~e~q~l~~ 156 (466)
.+.++=+-.++++.+|+.+|.+- +.+.-=....-+||+.+++=+..-..+..... .....|.-|++..+.-.+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~-----e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIEL-----EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERIN 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45555566677778888888773 55555555666777766655444444331111 222446666666666665
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+.+--+..|..++.....+|..|+.++....
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554433
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.74 E-value=2.3e+02 Score=32.06 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=20.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+++++..++.++..+.+++.++.....+|..+++++.++.+
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555554444
No 106
>PRK14143 heat shock protein GrpE; Provisional
Probab=41.70 E-value=42 Score=33.73 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=40.1
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecC
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPV 456 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~ 456 (466)
.+..+.+ .|..|||.+.|-|..... +...+-.|.=.+-+|+++|++||+ ++|-++..
T Consensus 166 GV~~i~~-~G~~FDP~~HEAv~~~~~------~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk~ 223 (238)
T PRK14143 166 GVSPMRV-VGQEFDPNLHEAVLREPS------DEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMG 223 (238)
T ss_pred CCeeeCC-CCCCCChHHhheeeeecC------CCCCcCeEEEEeeCCceeCCEecccceEEECCC
Confidence 3444554 599999999998865332 112344566789999999999997 56777653
No 107
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.54 E-value=3.4e+02 Score=29.72 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 150 EQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 150 e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+...++..|...+.+|..+++.-+.++..|+++|+++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666544
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.49 E-value=2.6e+02 Score=25.07 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLM 155 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~ 155 (466)
.+....++-....-++.=-...+.||-=|..+-+.-|+. ++.|..+|..+-. +..+|.+++.-.
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-----~~~L~~lr~e~~~-----------~~~~~~~l~~~~ 82 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-----IKELQQLREELQE-----------LQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344555555555666666667778888888887776665 3455555544433 333344444443
Q ss_pred hHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 156 KTYEITIKKLEG----EAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 156 ~tye~~~~kLe~----e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
.+-...+...+. +-..=..||..++.+++++...|+-|=..|
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322 223334578899999999999998876554
No 109
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.25 E-value=1.3e+02 Score=24.27 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNK 191 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~ 191 (466)
.++.+....++..+..+.+||.....-+.+|..+.++|+++...++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777788888888888888888888888877553
No 110
>PRK14142 heat shock protein GrpE; Provisional
Probab=41.18 E-value=28 Score=34.81 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecC
Q 039801 401 RNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPV 456 (466)
Q Consensus 401 rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~ 456 (466)
.|..|||.+-|-|...... .......|.-.+-+|+++++.||+ ++|-++..
T Consensus 132 ~Ge~FDP~~HEAv~~ve~~-----e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~ 183 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGDG-----GQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDT 183 (223)
T ss_pred CCCCCChhhhceeeeecCC-----CCCCCCEEEEEecCCcEeCCEeccCceEEECCC
Confidence 5999999999988542211 112233688888999999999997 67877743
No 111
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=40.58 E-value=2.6e+02 Score=31.18 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=64.2
Q ss_pred CCchHHhHhhHHHHHHHHHhHH--HHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039801 104 YNSEAIHLADQAVVDELKAISE--LKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKR 181 (466)
Q Consensus 104 ydpdkI~aAD~~vVsEL~~Ls~--LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~ 181 (466)
++++.|...=..|=+=|..|.. ++|.+.=+ ....++.+|.+.++..++...-|....+.++.....=-.++..|+.
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik--~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~p 474 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIK--SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEP 474 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7888887765444333333332 22333311 1234678899999999999998998888888888888889999999
Q ss_pred HHHHHHHhhhhhhhh
Q 039801 182 QLDDSIAFNKSLEKK 196 (466)
Q Consensus 182 ~L~e~~~~n~~lekr 196 (466)
+|+.+..+.+.|-+-
T Consensus 475 kL~~l~~~Tr~Lq~~ 489 (507)
T PF05600_consen 475 KLDALVERTRELQKQ 489 (507)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776543
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.54 E-value=1.1e+02 Score=29.68 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039801 173 ESEARSLKRQLDDSIAF 189 (466)
Q Consensus 173 dsei~~Lr~~L~e~~~~ 189 (466)
|++|..|..+|.++.++
T Consensus 130 e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555554
No 113
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=40.33 E-value=57 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
++|.++.-||.|++.|..+|..+|+.++++..
T Consensus 128 ARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 128 ARETLIMMMEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999988764
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.14 E-value=3.1e+02 Score=25.56 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=8.0
Q ss_pred HHHHHHhcCCCCchHHhH
Q 039801 94 YAELQMAQNPYNSEAIHL 111 (466)
Q Consensus 94 Y~qLQ~Ah~PydpdkI~a 111 (466)
|+.....-.++.|..+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~ 76 (191)
T PF04156_consen 59 CLLSKRPVQSVRPQQIEE 76 (191)
T ss_pred HHHHccccccchHHHHHh
Confidence 333344444555554444
No 115
>PRK14149 heat shock protein GrpE; Provisional
Probab=40.09 E-value=40 Score=32.92 Aligned_cols=53 Identities=8% Similarity=0.224 Sum_probs=35.5
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
+..+.. .| .|||.+.|-|..... +...+-.|.=.+-||+++++.||+ ++|-++
T Consensus 135 V~~I~~-~G-~FDP~~HEAv~~v~~------~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Va 188 (191)
T PRK14149 135 IEGIEC-LE-EFDPNFHNAIMQVKS------EEKENGKIVQVLQQGYKYKGRVLRPAMVSIA 188 (191)
T ss_pred CEEeCC-CC-CCChHHhheeeeecC------CCCCcCEEEEEeeCCcEeCCEEeeccEEEeC
Confidence 334443 36 599999998865332 122345577788999999999997 455544
No 116
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=39.74 E-value=1e+02 Score=27.80 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=34.3
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEA 169 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~ 169 (466)
++-+|++-+++++-....+.+.+-..++|+...+.+.|..+..|++.+
T Consensus 16 ~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 16 EVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 344556666665555555667889999999999988887777777654
No 117
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.69 E-value=1.7e+02 Score=29.04 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccC
Q 039801 174 SEARSLKRQLDDSIAFNKSLEKKLNAS 200 (466)
Q Consensus 174 sei~~Lr~~L~e~~~~n~~lekrl~~s 200 (466)
.|+.+.+.+|+.++...+.|++|+.-+
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 355566666666666667777776544
No 118
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=39.65 E-value=2.3e+02 Score=24.85 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHhHHHHHHHhhcc---CCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 039801 115 AVVDELKAISELKRSFLKKE---LDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNK 191 (466)
Q Consensus 115 ~vVsEL~~Ls~LK~~y~~~~---~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~ 191 (466)
..-..|..|.+.+..|...- ...+. -...+...+.-+......+...+.++..-..++...|..|.++...-+
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~----~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGAGT----SALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776421 11110 112233444445555555566666666666666666777766666655
Q ss_pred hhhh
Q 039801 192 SLEK 195 (466)
Q Consensus 192 ~lek 195 (466)
.+|+
T Consensus 107 ~lek 110 (141)
T TIGR02473 107 ALEK 110 (141)
T ss_pred HHHH
Confidence 5543
No 119
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=5.8e+02 Score=28.48 Aligned_cols=131 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred ccccCCcCCCCccccccccCCCCCCChhHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH
Q 039801 42 MLTSQNKFDQDDDDLFSIKGSKTHGDPRARQRAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK 121 (466)
Q Consensus 42 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~ 121 (466)
..+.+.+.-.+..+....+-+..++...--+.+.-+. ..+-|---..-.+|.+||+--+-+-... +||+
T Consensus 207 ~f~~t~dPa~p~~p~~~~passe~ee~eel~eq~een--eel~ae~kqh~v~~~ales~~sq~~e~~---------selE 275 (521)
T KOG1937|consen 207 NFKLTDDPALPPKPIFAKPASSEEEEVEELTEQNEEN--EELQAEYKQHLVEYKALESKRSQFEEQN---------SELE 275 (521)
T ss_pred cceecCCCCCCCccccCCCccccchhHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHH
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHH-------------------------------HHHHHHHHh
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEIT-------------------------------IKKLEGEAE 170 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~-------------------------------~~kLe~e~~ 170 (466)
.|..+|.+....-.|+......|.+.+.+.++-+-+.--. +++||.+++
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~ 355 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLE 355 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q ss_pred hhHHHHH---HHHHHH
Q 039801 171 MKESEAR---SLKRQL 183 (466)
Q Consensus 171 ~Kdsei~---~Lr~~L 183 (466)
++|.||. .|+++|
T Consensus 356 a~~eei~~~eel~~~L 371 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKL 371 (521)
T ss_pred HHHHHHHhhHHHHHHH
No 120
>PRK09039 hypothetical protein; Validated
Probab=39.55 E-value=3.9e+02 Score=28.11 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=25.3
Q ss_pred hhcCccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhhccCCCceeEEecCCCcccccc
Q 039801 349 LFGNLNQRKLINAGECPDSAFFTSFAEMARRVWLLHRLAFSLDQPVSIFQVPRNCRFSEVY 409 (466)
Q Consensus 349 fFGnl~~r~~V~~g~~P~t~fy~aF~~mAksVWlLH~LAfSf~p~a~IF~V~rG~~F~~~Y 409 (466)
+=|..|.+.+...|.++. .|- +..++..=....|.-.-=|+-+|-.++.| .+.|+.
T Consensus 267 I~GHTD~~p~~~~g~~~~-N~~---LS~~RA~aV~~~Li~~Gi~~~ri~~~G~G-~~~Pi~ 322 (343)
T PRK09039 267 VDGHTDNVPLSGTGRFRD-NWE---LSSARAISVVKFLIALGVPADRLAAAGFG-EFQPLD 322 (343)
T ss_pred EEEecCCCCccCCCCccc-HHH---HHHHHHHHHHHHHHHCCCCHHHeEEEEeC-CcCcCC
Confidence 456666665433344443 233 33333332333333222344466666666 344443
No 121
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.85 E-value=1.7e+02 Score=30.41 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
+..++++.+.-++.-+..+++.+.++..-+.++..|+.++++.......|+..+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666666666677777777776666665555443
No 122
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.62 E-value=66 Score=25.63 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
+.+||.++-.-++.|..+|.+++++....-.+++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777766666666554
No 123
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=38.37 E-value=1.3e+02 Score=33.09 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHhhHH---------HHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChh-hHHHHH
Q 039801 77 EALVAKLFAGVTSIK---------AAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQ-VTIMLA 146 (466)
Q Consensus 77 eali~~lFa~VSslK---------aAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~a 146 (466)
++.|.++.+.|..+- .-|+-||..+.|=+...+. +|+++|..|+.-+-.=..+..+.... .-.+..
T Consensus 142 ~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~lQL~~~~~~~~~~~----~v~~~l~lla~~d~~~i~~~~~v~~~dl~~~l~ 217 (444)
T COG1508 142 EEEVEKVLARIQSLDPAGVGARDLRECLLLQLERRPLDDPALE----IVIDHLELLARRDFTTIARELKVDEDELKEALL 217 (444)
T ss_pred HHHHHHHHHHHhcCCCCccccCcHHHHHHHHHHhcCCCChhHH----HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHH
Confidence 567777777776653 4588899988766655554 78889998876541111111111111 011222
Q ss_pred HHHHH----------------------------------------HhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 147 EIQEQ----------------------------------------QSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 147 ei~e~----------------------------------------q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
+|+.+ =.+-++|..++++-+. +.+...|+++|.++
T Consensus 218 ~I~~l~PrPg~~f~~~~~~~vvPDv~v~~~~g~w~v~ln~d~lP~i~ln~~Y~~~~~~~~~-----~~~~~~L~~~lq~A 292 (444)
T COG1508 218 LIRSLDPRPGLEFSSGEAEYVVPDVLVRKHNGEWTVELNDDSLPRIRLNQEYAALVSRAEN-----DEDQDFLKEKLQEA 292 (444)
T ss_pred HHHccCCCCccccccCCCcccCCCEEEEeeCCeEEEEEccccCceeeecHHHHHHHhhccc-----chhHHHHHHHHHHH
Confidence 22221 1345789999887655 66778999999999
Q ss_pred HHhhhhhhhhh
Q 039801 187 IAFNKSLEKKL 197 (466)
Q Consensus 187 ~~~n~~lekrl 197 (466)
.---++|+.|-
T Consensus 293 ~wLiksL~qR~ 303 (444)
T COG1508 293 KWLIKSLEQRE 303 (444)
T ss_pred HHHHHHHHHHH
Confidence 88888888773
No 124
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.75 E-value=4.9e+02 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHH
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQ 98 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ 98 (466)
++.-+..+=..+..++....+|+
T Consensus 763 l~~~i~~l~~~i~~l~~el~~l~ 785 (1164)
T TIGR02169 763 LEARIEELEEDLHKLEEALNDLE 785 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556665555554
No 125
>PRK14164 heat shock protein GrpE; Provisional
Probab=37.65 E-value=29 Score=34.47 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 401 RNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 401 rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
.|..|+|..-|-|..... .+ ...|+=.+-+||++|++||+ ++|-++.
T Consensus 169 ~Ge~FDP~~HEAV~~~~~-------~~-~~~V~~V~qkGY~l~dRVLRPA~V~Vak 216 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSS-------GD-EKVLGTVLRKGYRMGDRVLRTAMVIIAD 216 (218)
T ss_pred CCCCCChhHhheeeeecC-------CC-CCEeeEEeeCCcEECCEeccCceEEeCC
Confidence 599999999998854331 11 23577778999999999997 4666553
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.61 E-value=1.1e+02 Score=30.97 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
+.|+.-|.-||.-.| .-..+||.|++.--.+|..||.+++.+..-|-+|=+|+.
T Consensus 78 ~siLpIVtsQRDRFR---~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 78 SSILPIVTSQRDRFR---QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776644 445889999999999999999999999999999888764
No 127
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.40 E-value=21 Score=39.51 Aligned_cols=17 Identities=6% Similarity=0.000 Sum_probs=8.4
Q ss_pred eEEecCCCccccccccc
Q 039801 396 IFQVPRNCRFSEVYMEN 412 (466)
Q Consensus 396 IF~V~rG~~F~~~YMEs 412 (466)
-+++-=|.=|+..|+..
T Consensus 240 ~~K~CyGRGfe~~~~~~ 256 (489)
T PF11853_consen 240 YIKFCYGRGFENGFGSP 256 (489)
T ss_pred EEEEEecCCccccccCC
Confidence 33444445555555554
No 128
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.37 E-value=7.8e+02 Score=30.64 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHH--HHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 039801 74 AVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVV--DELKAISELKRSFLKKELDLSPQVTIMLAEIQEQ 151 (466)
Q Consensus 74 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vV--sEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~ 151 (466)
..++....++=..-.++++.-..+|..-.||..+.+++.-++=| |||+-|......-.++--........+...++|.
T Consensus 461 ~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~ 540 (1293)
T KOG0996|consen 461 RELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEK 540 (1293)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888999999999999999999999999998888 4555554443322221000111112233445555
Q ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 152 QSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 152 q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+-.+...+..+..++.|++.+..++..|+.+...+.
T Consensus 541 ~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 541 KTELDDLKEELPSLKQELKEKEKELPKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555555555555555555554433
No 129
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.32 E-value=2.5e+02 Score=27.51 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
+.++|||.++++.|-+ ..+|.++..=+-|+...+++|
T Consensus 103 s~veaEik~L~s~Lt~-----eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 103 SYVEAEIKELSSALTT-----EEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777777733 344444444444444444444
No 130
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.80 E-value=2.6e+02 Score=33.37 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=58.9
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASG 201 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~ 201 (466)
.+-++-+.||+...-.--+.-.+..+|.++|-..-+.|....+||+-+..-.++...-+-+|+++++.-..+++-|....
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 44556678887533332344556777888888777777777777766665555555545555555444444555444333
Q ss_pred CC--ccchhhhcccCCH----HHHHHHHHHHHHH
Q 039801 202 PI--SILENVQLSALST----SHFVQFLHFSLRS 229 (466)
Q Consensus 202 ~l--s~~~~l~~s~~sp----~~F~~~l~~A~~S 229 (466)
+- ..++.|+-+-.-. ..|.+.+.++.+-
T Consensus 162 ~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~e 195 (1265)
T KOG0976|consen 162 HDIFMIGEDLHDKNEELNEFNMEFQTKLAEANRE 195 (1265)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 21 2233333332222 2455666655543
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.57 E-value=1.9e+02 Score=34.43 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh----------hhhccCCC-Cccchh
Q 039801 140 QVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE----------KKLNASGP-ISILEN 208 (466)
Q Consensus 140 ~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le----------krl~~s~~-ls~~~~ 208 (466)
+...++..++.+|.+.++-|+..+.|-.+...++.+|+.||.++-.++...+..| +|++.-|. ++++|.
T Consensus 359 krd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~ 438 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADY 438 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456677788899999999999999999999999999999999988877643333 34444332 344442
Q ss_pred hhcccCCHHHHHHHHHHHHHH
Q 039801 209 VQLSALSTSHFVQFLHFSLRS 229 (466)
Q Consensus 209 l~~s~~sp~~F~~~l~~A~~S 229 (466)
--++|-.+.++|.-+
T Consensus 439 ------Q~s~fk~Lke~aegs 453 (1265)
T KOG0976|consen 439 ------QLSNFKVLKEHAEGS 453 (1265)
T ss_pred ------HHhhHHHHHHhhhhh
Confidence 245677777776443
No 132
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.36 E-value=3.5e+02 Score=25.00 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=52.5
Q ss_pred HHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhh--------HHHHHHHHHHHhhhhHH--------------HHHHHHH
Q 039801 108 AIHLADQAVVDELKAISELKRSFLKKELDLSPQV--------TIMLAEIQEQQSLMKTY--------------EITIKKL 165 (466)
Q Consensus 108 kI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~--------~~l~aei~e~q~l~~ty--------------e~~~~kL 165 (466)
....++.+|..=...+|.||.-|..=+..-+|.. ..+-+|++.+-.+=+.| ...++.+
T Consensus 6 ~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~ 85 (131)
T PF04859_consen 6 RAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQ 85 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHH
Confidence 3344444444555799999999998544444432 23344444443333333 4456777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 166 EGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 166 e~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
++.++..+.-+..|+.+++.=.+.-..|-++
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~ 116 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887776444443444333
No 133
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.03 E-value=2.2e+02 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+.+|++++..-...+..|+.+++++.+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 134
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.98 E-value=2.6e+02 Score=23.81 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 118 DELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMK-ESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 118 sEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~K-dsei~~Lr~~L~e~~~~n~~lekr 196 (466)
.|++.|-...|.+.+..++.-. +.|++.|=+..|..+.+.-+.-... ..+|..|+++...+...|..|-++
T Consensus 26 ~~~~~L~~~~R~~~GedL~~Ls--------~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 26 KENESLQKELRHLMGEDLESLS--------LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHhccccccccccc--------hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443322 4566666666666666543332222 347889999999999999888777
Q ss_pred h
Q 039801 197 L 197 (466)
Q Consensus 197 l 197 (466)
+
T Consensus 98 ~ 98 (100)
T PF01486_consen 98 I 98 (100)
T ss_pred h
Confidence 5
No 135
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=1.1e+02 Score=27.88 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=36.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
++++...+.++|..++-|+++.+.-+.++..|+.+|.+....+
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5667778889999999999999999999999999997776543
No 136
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.90 E-value=2.4e+02 Score=23.71 Aligned_cols=52 Identities=23% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
..++++|.|+...+.-=|.++..|...+-.-.-.|+.++.+|+-+..+=..+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477888888888888899999999999999999999999997666544433
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.81 E-value=6.9e+02 Score=27.93 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.4
Q ss_pred H-HhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH
Q 039801 84 F-AGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK 121 (466)
Q Consensus 84 F-a~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~ 121 (466)
| +-+.-|+.+|-+|...|..++...|..-=+.+-.+|.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 7 7888899999999999999998876544333333333
No 138
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.68 E-value=1.2e+02 Score=26.84 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
|...++.++.-++......++|+..++..+.+|..||+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444455555555555555555555555665555543
No 139
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.50 E-value=2.6e+02 Score=23.02 Aligned_cols=39 Identities=31% Similarity=0.383 Sum_probs=28.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
-|..+|.-++.-|..+..|...+..-+.++..|+..|..
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555666666777788888888888888888887753
No 140
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=34.32 E-value=80 Score=29.14 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=43.2
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 124 SELKRSFLKKELDLSPQVTIMLAEIQEQ-QSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 124 s~LK~~y~~~~~~~~~~~~~l~aei~e~-q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
|+|||-=+..+|..+.....+.+=..++ .+.-+.+.=+++|+++.+..-...++.|-.+|..+...|
T Consensus 33 CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li~kie~~L~~~~dkle~l~~~L~~Li~~n 100 (128)
T PF12614_consen 33 CELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLIKKIEAALLQHSDKLEPLEDKLARLIPQN 100 (128)
T ss_pred chHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchHHHHHHHHHHhC
Confidence 6778666666665553332222222222 123345677789999998888888888888888887766
No 141
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.25 E-value=3.5e+02 Score=33.36 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=23.0
Q ss_pred HHHHHHHhHhhHHH---HHHHHHHhcCCCCchHHhHhhHHHH
Q 039801 79 LVAKLFAGVTSIKA---AYAELQMAQNPYNSEAIHLADQAVV 117 (466)
Q Consensus 79 li~~lFa~VSslKa---AY~qLQ~Ah~PydpdkI~aAD~~vV 117 (466)
-+.+.++..-+++. .|..+.....|--.+.+..+-.-+-
T Consensus 720 ~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~ 761 (1311)
T TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQ 761 (1311)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 34455555555553 4444555677887777777654443
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.25 E-value=1.4e+02 Score=36.09 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=16.1
Q ss_pred hHhhHHHHHHHHHhHHHHHHHhhccC
Q 039801 110 HLADQAVVDELKAISELKRSFLKKEL 135 (466)
Q Consensus 110 ~aAD~~vVsEL~~Ls~LK~~y~~~~~ 135 (466)
+.|-+.+.+.+..+..|-..|+...-
T Consensus 131 qe~se~i~e~~le~vGl~~~~~~s~s 156 (1195)
T KOG4643|consen 131 QEASEKIAEKLLELVGLEKKYRESRS 156 (1195)
T ss_pred HHHHHHHHHHHHHHhcccceeecccc
Confidence 33444455666777777777876543
No 143
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.23 E-value=2.8e+02 Score=33.75 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=4.7
Q ss_pred HHHhhhhHHHHHH
Q 039801 150 EQQSLMKTYEITI 162 (466)
Q Consensus 150 e~q~l~~tye~~~ 162 (466)
+.++-++-++.++
T Consensus 369 ~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQI 381 (1074)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 144
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.14 E-value=2.7e+02 Score=36.14 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
..+..+++++.+.++.+|.+..|++.|....+.+|..|++.+..+...+.+|.+
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999999988777766553
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.51 E-value=92 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 161 TIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 161 ~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+..+||+-|+.-=..|..|+-+++++..+|..|....+.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888889999999999999999888876443
No 146
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.11 E-value=8.4e+02 Score=29.44 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCC------------------
Q 039801 145 LAEIQEQQSL----MKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGP------------------ 202 (466)
Q Consensus 145 ~aei~e~q~l----~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~------------------ 202 (466)
.-|++++|.- ...|-..+..|+..+..||.+...++.++++.......+++-+++.+.
T Consensus 507 ~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~~ 586 (980)
T KOG0980|consen 507 LIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDLN 586 (980)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHhc
Confidence 4445544433 334556678888999999999999998886554433334333222210
Q ss_pred ------------------Cccch-hhhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039801 203 ------------------ISILE-NVQLS-ALSTSHFVQFLHFSLRSMTSFVKLLVREM 241 (466)
Q Consensus 203 ------------------ls~~~-~l~~s-~~sp~~F~~~l~~A~~Si~~F~K~Li~~M 241 (466)
++-+| +++.. ..+|++.+.++..+...+-+|.+.+-+.+
T Consensus 587 ~~il~~~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yl 645 (980)
T KOG0980|consen 587 DPILDGSLASGIQALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYL 645 (980)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00111 11111 35788999999999999999998766555
No 147
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=32.81 E-value=2.2e+02 Score=33.47 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=50.8
Q ss_pred hHhhHHHHHHHHHhHHHHHHHh--hccCCC----Chhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 039801 110 HLADQAVVDELKAISELKRSFL--KKELDL----SPQV-TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQ 182 (466)
Q Consensus 110 ~aAD~~vVsEL~~Ls~LK~~y~--~~~~~~----~~~~-~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~ 182 (466)
.+=-+-.|.|+++.-++-|.++ .++.+. .|.. ..+ .-++.+-+.++|..+.|||+|++.=++--..||.+
T Consensus 45 ~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~---~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n 121 (829)
T KOG2189|consen 45 SAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESP---PAPPPREIIDLEEQLEKLESELRELNANKEALKAN 121 (829)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccC---CCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344556778888877766544 322211 1100 000 01234456678888999999999888888888888
Q ss_pred HHHHHHhhhhhhh
Q 039801 183 LDDSIAFNKSLEK 195 (466)
Q Consensus 183 L~e~~~~n~~lek 195 (466)
+.++.....-|+|
T Consensus 122 ~~eL~E~~~vl~~ 134 (829)
T KOG2189|consen 122 YNELLELKYVLEK 134 (829)
T ss_pred HHHHHHHHHHHHh
Confidence 8877766555543
No 148
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.53 E-value=92 Score=34.62 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHH-HH-
Q 039801 89 SIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKK-LE- 166 (466)
Q Consensus 89 slKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~k-Le- 166 (466)
-||.||-+|=+- |-|||++.+|.--++|- ..-.++|-|-= =.+++|.++ |++..++ |+
T Consensus 25 eI~~AYrr~~~l---fHPDkh~dpd~K~~AE~-~F~~i~~AyEV--------------LsDp~kRaI--YD~~G~qGL~t 84 (546)
T KOG0718|consen 25 EIKKAYRRLSRL---FHPDKHTDPDQKKAAEE-KFQRIQRAYEV--------------LSDPQKRAI--YDNYGEQGLKT 84 (546)
T ss_pred HHHHHHHHHHHh---cCCcccCChhHHHHHHH-HHHHHHHHHHH--------------hcChHHHHH--HHHhhhccccc
Confidence 368888887433 33899999998777763 22233333321 012334444 6555443 22
Q ss_pred --HHHhhhHHHHHHHHHHHHHHHHhhh--hhhhhhccCCC
Q 039801 167 --GEAEMKESEARSLKRQLDDSIAFNK--SLEKKLNASGP 202 (466)
Q Consensus 167 --~e~~~Kdsei~~Lr~~L~e~~~~n~--~lekrl~~s~~ 202 (466)
.|+=-|-.--+++|++++.+.+.+. +|-.|.+++|.
T Consensus 85 ~gwEl~~r~~tpeEIreE~Erl~r~~de~~l~qr~~P~g~ 124 (546)
T KOG0718|consen 85 EGWELGFRGKTPEEIREEYERLQRERDERRLQQRVQPTGE 124 (546)
T ss_pred cCceeecCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCce
Confidence 3333444555678999998888663 35567777764
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.42 E-value=5.2e+02 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
...|...+..|+.++....++|..++.+++.
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~ 169 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQA 169 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 150
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.19 E-value=1e+02 Score=34.13 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhH
Q 039801 75 VMEALVAKLFAGV 87 (466)
Q Consensus 75 ~~eali~~lFa~V 87 (466)
.|.++|...|+.-
T Consensus 53 ~~~~vV~~~Fddk 65 (475)
T PRK13729 53 DMTGVVDTTFDDK 65 (475)
T ss_pred CccceecchhHHH
Confidence 4566777777765
No 151
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.05 E-value=1.2e+02 Score=30.77 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHH
Q 039801 120 LKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTY 158 (466)
Q Consensus 120 L~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~ty 158 (466)
.+++..|+++|..- ......|+++|.+|+.-|..+
T Consensus 179 ~eki~~Lr~~y~~l----~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 179 REKIAALRQRYNQL----SNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666652 223355677777776666554
No 152
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=31.90 E-value=5.1e+02 Score=25.57 Aligned_cols=84 Identities=30% Similarity=0.375 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhh-----ccCCCChhhHHHHHHHHHHHhhhhHHHHHH
Q 039801 88 TSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLK-----KELDLSPQVTIMLAEIQEQQSLMKTYEITI 162 (466)
Q Consensus 88 SslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~-----~~~~~~~~~~~l~aei~e~q~l~~tye~~~ 162 (466)
++++..|-+|.+. .+.||+.--.|=+.|-+ +++. ....+..++|+.+..-+
T Consensus 40 ~~~~~KY~~lR~E---------------lI~ELkqsKklydnYYkL~~KY~~LK------~~~~~~~~l~~~i~~le--- 95 (196)
T PF15272_consen 40 TSYKEKYQQLRQE---------------LINELKQSKKLYDNYYKLYSKYQELK------KSSKQSEDLQSRISNLE--- 95 (196)
T ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHhhHHHHHHHHHHH---
Confidence 6678888888754 68888877766666653 1111 12333344444443222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
++|-.++..||.+|..+.++|..+..++..|+.
T Consensus 96 ~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~ 128 (196)
T PF15272_consen 96 KQLVDQMIEKDREIRTLQDELLSLELRNKELQN 128 (196)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344446688999999999999988888877764
No 153
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=31.72 E-value=39 Score=24.69 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCHHHHhhhh
Q 039801 237 LVREMESANWDLDLAAKVI 255 (466)
Q Consensus 237 Li~~M~~agwdl~~aa~~i 255 (466)
-+..++..+|||..|++..
T Consensus 18 A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 18 AIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3566899999999999864
No 154
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.62 E-value=1.9e+02 Score=29.13 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
+.+..+++.++..+..+..-..+..+....=+.+|..||..|++.+..+..|+.++.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 445555555555555554444444444444455666666666666666666665543
No 155
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.60 E-value=6e+02 Score=31.10 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=47.6
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHhhccCCCC---hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 109 IHLADQAVVDELKAISELKRSFLKKELDLS---PQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 109 I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~---~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
+...++-+=.++.++.++++.+...+.... -.+.....||++.++.++.+-.-+.+++.+++...+.|..+|...+.
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555444443221111 11244556677777777777666666666666666666666666665
Q ss_pred HHHhhhhhhhhh
Q 039801 186 SIAFNKSLEKKL 197 (466)
Q Consensus 186 ~~~~n~~lekrl 197 (466)
+.+.=..+++..
T Consensus 377 l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 377 LEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555544555554
No 156
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.27 E-value=6.9e+02 Score=26.87 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=44.5
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEI--------------TIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~--------------~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
.|++|..+|..+ +|..-.+.++|+.++..++.... ....|+.++..-+.++..|+.+++.+.
T Consensus 262 ~l~~l~~~y~~~----hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~ 337 (498)
T TIGR03007 262 QLDALRLRYTDK----HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELT 337 (498)
T ss_pred HHHHHHHHhccc----ChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778665 57766677777777766544321 123455555666666666666666666
Q ss_pred Hhhhhhhhhhc
Q 039801 188 AFNKSLEKKLN 198 (466)
Q Consensus 188 ~~n~~lekrl~ 198 (466)
+.-..++.++.
T Consensus 338 ~~~~~~~~~~~ 348 (498)
T TIGR03007 338 ARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 157
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.18 E-value=2e+02 Score=25.05 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 115 AVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 115 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
.|..||..|.+=..+|+.=.+-...+ + ...-+..+..-+...|..+++|+.+.......+..++.+|.++
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~vlv~~-~-~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGNLLVKT-D-KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHcCCCcchhHHHhchhhhee-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765556666421100000 0 1111223333344445555666655555555555555555544
No 158
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=30.94 E-value=2.5e+02 Score=25.69 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039801 172 KESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLVREM 241 (466)
Q Consensus 172 Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M 241 (466)
||.-++.|-.+|..|...|+.|-+++.+++...... .-..+||..=...+..+ +..|++.-...+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p--~~~~LTp~qKe~~I~s~---~~~Lss~A~~KI 65 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSP--DDEVLTPAQKEAMITSA---VSKLSSQASKKI 65 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-T--T--B--HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC--CccccChHHHHHHHHHH---HHHHHHHHHHHH
Confidence 456677888888899999999999999876311100 11246777655555543 355555544443
No 159
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=30.80 E-value=1e+02 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=22.1
Q ss_pred CCchHHhHhhHHHHHHHHHhHHHHHHHhh--ccCCCChh
Q 039801 104 YNSEAIHLADQAVVDELKAISELKRSFLK--KELDLSPQ 140 (466)
Q Consensus 104 ydpdkI~aAD~~vVsEL~~Ls~LK~~y~~--~~~~~~~~ 140 (466)
|.||.|..- |-||++|.+|++.... .+.+.++.
T Consensus 99 F~Pd~v~~q----Vp~L~~LlelR~~L~~L~~~l~~~~~ 133 (157)
T PF05591_consen 99 FHPDAVAEQ----VPELRKLLELREQLRDLKGPLDNNPA 133 (157)
T ss_pred CCHHHHHHh----hHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 568886553 7788888888877764 34444443
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.67 E-value=2.3e+02 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
...+.+|++++..-..+|..|+.+|+++....
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33457777777777777888888887775543
No 161
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.53 E-value=8.9e+02 Score=30.44 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHH
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKR 128 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~ 128 (466)
++.+..+.=+-+-+|..|=...+.|+ +.|+.||.-++--=+.|...++
T Consensus 1558 A~~v~~~ae~V~eaL~~Ad~Aq~~a~-----~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1558 AEDVKGQAEDVVEALEEADVAQGEAQ-----DAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHH
Confidence 34444333344445555555555553 6777777766544444444443
No 162
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.52 E-value=8.2e+02 Score=30.59 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred HhHhhHHHHHHHHHHhc----CCCCchHHhHhhHHH
Q 039801 85 AGVTSIKAAYAELQMAQ----NPYNSEAIHLADQAV 116 (466)
Q Consensus 85 a~VSslKaAY~qLQ~Ah----~PydpdkI~aAD~~v 116 (466)
+....+..+..+++.+- .||+++...++..++
T Consensus 818 ~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 818 AAAAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 33444555555555554 499999999976665
No 163
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.26 E-value=5.1e+02 Score=31.61 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=5.3
Q ss_pred hHhhHHHHHHHHHH
Q 039801 86 GVTSIKAAYAELQM 99 (466)
Q Consensus 86 ~VSslKaAY~qLQ~ 99 (466)
.+..++..+..+..
T Consensus 377 ~~~~~~~~~~~~~~ 390 (1163)
T COG1196 377 LFEALREELAELEA 390 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 164
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.22 E-value=2.1e+02 Score=24.68 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039801 140 QVTIMLAEIQEQQSLMKTYEITIKKLEGE 168 (466)
Q Consensus 140 ~~~~l~aei~e~q~l~~tye~~~~kLe~e 168 (466)
....++.|..++.+.+.+||..++.|..|
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 34667888888888888888777776665
No 165
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=30.16 E-value=5e+02 Score=26.46 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=57.9
Q ss_pred chHHhHhhHHHHHHHHHhHHHHHHHhh---ccC-CCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039801 106 SEAIHLADQAVVDELKAISELKRSFLK---KEL-DLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKR 181 (466)
Q Consensus 106 pdkI~aAD~~vVsEL~~Ls~LK~~y~~---~~~-~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~ 181 (466)
.++|.+.-+.+-.||+..-++-.+|.. +.. ++.+........+.+.=--+|-||+.++.|.+++..=..+|..|..
T Consensus 4 ~~a~~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~ 83 (281)
T PF12018_consen 4 QEAIPATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIK 83 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999998888874 221 2221111111223333345688999999999999999999999988
Q ss_pred HHHHHHH
Q 039801 182 QLDDSIA 188 (466)
Q Consensus 182 ~L~e~~~ 188 (466)
+++....
T Consensus 84 ~~~~~l~ 90 (281)
T PF12018_consen 84 RFEAQLE 90 (281)
T ss_pred HHHHHHH
Confidence 8865443
No 166
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.90 E-value=5.5e+02 Score=26.89 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=28.0
Q ss_pred hHhhHHHHHHHHHHhcCCCCchHHhHhhHH--HHHHHHHhHHH
Q 039801 86 GVTSIKAAYAELQMAQNPYNSEAIHLADQA--VVDELKAISEL 126 (466)
Q Consensus 86 ~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~--vVsEL~~Ls~L 126 (466)
+.+++=.=|=+-|+|| .+.|.-||.+ |...|+.+|..
T Consensus 32 ~AgA~Y~~yQ~~EQAr----~~A~~fA~~ld~~~~kl~~Ms~~ 70 (301)
T PF06120_consen 32 GAGAWYYFYQNAEQAR----QEAIEFADSLDELKEKLKEMSST 70 (301)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHhcCHH
Confidence 4567777799999999 8999999975 55666665554
No 167
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.58 E-value=3.8e+02 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHH
Q 039801 140 QVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMK----------ESEARSLKRQLDDSI 187 (466)
Q Consensus 140 ~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~K----------dsei~~Lr~~L~e~~ 187 (466)
....+.+++|.+-.++...+..+..||+++..+ ...|..|+++++++.
T Consensus 821 ~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 821 RLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889998888988899999999985433 335777888888874
No 168
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=29.31 E-value=4.4e+02 Score=28.97 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=24.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
-|..+|.-+..-++.+..|.+-+.-.+-+|..|+.+++.+...=.....|+.
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333444333333344666666666555555555555553
No 169
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.07 E-value=1.2e+03 Score=29.80 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 039801 221 QFLHFSLRSMTSFVKLLVREMESAN 245 (466)
Q Consensus 221 ~~l~~A~~Si~~F~K~Li~~M~~ag 245 (466)
+-+..+...+..|.+.+-..++..|
T Consensus 463 ~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 463 QKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555556666666666665444
No 170
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.02 E-value=3.7e+02 Score=25.82 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHhhhhhhhhhcc
Q 039801 159 EITIKKLEGEAEMKESEAR-----SLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~-----~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+..+.+||..+..|+.+|+ .-|.+++|....-..||.|+..
T Consensus 98 ~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 98 TRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777776443 3456666666666666655543
No 171
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.85 E-value=1.8e+02 Score=27.29 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh----hhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNK----SLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~----~lekrl~ 198 (466)
+..++..++.-|.+...+++.|+.. ...++.|+.+++++...|. .++.++.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~ 79 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEAKLA 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666652 2344577888888888887 4444443
No 172
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.78 E-value=84 Score=24.91 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=11.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
..|+.++..-..++..|+++++.+
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444
No 173
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.75 E-value=6.1e+02 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 158 YEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 158 ye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
.+.-+++.+.+++..+.+...|+++.+++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333444444444444444444444433
No 174
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.63 E-value=2e+02 Score=34.73 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
..++++..+.-+-++..+..++..+.++..=|+++..++++++++....+.|+.
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555566667777888888888889999999999999888777764
No 175
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.28 E-value=97 Score=24.37 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 158 YEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 158 ye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
.+.+..+|++|-+.+-.+-...++.|.++...|..|-..|+.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888888888899999999999888777653
No 176
>PRK10869 recombination and repair protein; Provisional
Probab=28.24 E-value=8.8e+02 Score=27.13 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=41.0
Q ss_pred hHhhHHHHHHHHHHh---------cCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhh
Q 039801 86 GVTSIKAAYAELQMA---------QNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMK 156 (466)
Q Consensus 86 ~VSslKaAY~qLQ~A---------h~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~ 156 (466)
.+..+..+|.+||.+ ..-|||+.+.. |-+=|..|..|||.|..+ ....-....++++.-..+.
T Consensus 266 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~----ie~Rl~~l~~L~rKyg~~----~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 266 VLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAE----LEQRLSKQISLARKHHVS----PEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHhh
Confidence 444455555555533 23455544332 223344555555555431 1111112223333333344
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
.++..+++|+.++..-..+...+-++|...
T Consensus 338 ~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~ 367 (553)
T PRK10869 338 DQEDDLETLALAVEKHHQQALETAQKLHQS 367 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 177
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.84 E-value=7.1e+02 Score=25.88 Aligned_cols=53 Identities=23% Similarity=0.134 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
.++.+..+++..-..||...+.++.++.....|...|+.+++-....-.+|.+
T Consensus 82 ~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 82 ELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555556655666788888888888887777777777777766666666655
No 178
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.84 E-value=2.5e+02 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039801 174 SEARSLKRQLDDSIAFNK 191 (466)
Q Consensus 174 sei~~Lr~~L~e~~~~n~ 191 (466)
.+...|+..+..+...+.
T Consensus 40 ~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444433333333
No 179
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.55 E-value=56 Score=37.83 Aligned_cols=61 Identities=30% Similarity=0.441 Sum_probs=47.3
Q ss_pred ChHHHHHHHhhhhhchhhhhhhhhcCccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhhccC
Q 039801 327 SSFAQFMRSKYLHLVHAKMECSLFGNLNQRKLINAGECPDSAFFTSFAEMARRVWLLHRLAFSLD 391 (466)
Q Consensus 327 s~F~kFC~~Kyl~lVh~~ME~SfFGnl~~r~~V~~g~~P~t~fy~aF~~mAksVWlLH~LAfSf~ 391 (466)
...+||-|.|=-.++|| |.|.-||=-.....+..|-||.+.=++--..|=.- |.+|-+|||
T Consensus 84 D~laRf~rm~GynVihP-MGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Q---l~~lg~~FD 144 (876)
T KOG0435|consen 84 DILARFYRMKGYNVIHP-MGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQ---LKSLGISFD 144 (876)
T ss_pred HHHHHHHHhcCceeecC-CcccccCCchhhHHHhcCCCchhhhHHHHHHHHHH---HHHcCcccc
Confidence 34567777777788898 99999997778888999999998888877777654 445555655
No 180
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.51 E-value=1.8e+02 Score=27.54 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 167 GEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 167 ~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
.+....+.||..|+++|+..+.....|.++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667899999999998777776676654
No 181
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.49 E-value=96 Score=26.48 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=10.8
Q ss_pred ccCCHHHHHHHHHHHH
Q 039801 212 SALSTSHFVQFLHFSL 227 (466)
Q Consensus 212 s~~sp~~F~~~l~~A~ 227 (466)
..+||+.+..+|+...
T Consensus 46 ~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 46 MKMTPEELAAFLRAMK 61 (83)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3578887777776544
No 182
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.25 E-value=1.9e+02 Score=24.87 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 154 LMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 154 l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
-+...+..+++|+.++.....++..|+.+|.++.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566667777777777777777777776653
No 183
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.02 E-value=1.2e+03 Score=28.57 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
.+|++.+.-+..++..+..|+.++..=+.++..++.+|.
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 866 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELE 866 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 184
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=26.97 E-value=5e+02 Score=23.85 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=61.0
Q ss_pred HHHHHHhcCC-CCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHH--HHHHHHHHhhhhHHHHH--HHHHHHH
Q 039801 94 YAELQMAQNP-YNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIM--LAEIQEQQSLMKTYEIT--IKKLEGE 168 (466)
Q Consensus 94 Y~qLQ~Ah~P-ydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l--~aei~e~q~l~~tye~~--~~kLe~e 168 (466)
|+.-|.+|.| +.+++++-.-++......+++..-.-|.-. --++.| .--|=-.| .++|+.. +.+|++.
T Consensus 3 n~a~~~~~~~~q~~~a~q~~~~vl~k~~~~~t~~EKvly~~-----~~va~L~vai~ii~~q--~~~yqvq~ei~~Le~k 75 (120)
T COG4839 3 NVAYQAAKPDKQQRQAEQPKKQVLRKKRKKFTKVEKVLYTT-----LAVAALVVAISIISVQ--TKAYQVQGEITDLESK 75 (120)
T ss_pred hHHHhhcCcccccccccCccchHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH
Confidence 4445666655 667888888888888888888663333321 011111 11111111 2334433 5799999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 169 AEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 169 ~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
+.....|...|+.+..|+.+.-+-|+.
T Consensus 76 Is~q~~e~~dlkqeV~dLss~eRIldi 102 (120)
T COG4839 76 ISEQKTENDDLKQEVKDLSSPERILDI 102 (120)
T ss_pred HHHHHhhhhhHHHHHHHhccHHHHHHH
Confidence 999999999999999999887776653
No 185
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=26.73 E-value=5.5e+02 Score=25.82 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 117 VDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 117 VsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+++|+++-.|+..|...++. ...+.+..+ +...+..+++++.+++.....+..|++-.+.+...
T Consensus 2 i~~~~~~~~~r~~~~~~~~~--~~L~~i~~~-------~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~ 65 (243)
T PF07160_consen 2 ISELKELLSLRNMGQDPNLK--DTLSKIDQE-------VSAIEELLNDIEQELQREEEALPKLKELMESSEEQ 65 (243)
T ss_dssp HHHHHHHHHHHHHHHSHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCChH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999998777432100 001223333 45566777888888887777666666555444433
No 186
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.28 E-value=3.7e+02 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=12.9
Q ss_pred hHhhHHHHHHHHHH-hc
Q 039801 86 GVTSIKAAYAELQM-AQ 101 (466)
Q Consensus 86 ~VSslKaAY~qLQ~-Ah 101 (466)
--|.+|--|+|||. +|
T Consensus 244 ~~SrlkqEnlqLvhR~h 260 (502)
T KOG0982|consen 244 RSSRLKQENLQLVHRYH 260 (502)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 36889999999996 55
No 187
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=26.28 E-value=2e+02 Score=22.25 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 161 TIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 161 ~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
.+.++|.++..||.+|..|+.=++.+..+
T Consensus 8 ~l~~~e~~~~~k~~~v~eLe~YiD~LL~r 36 (48)
T PF09457_consen 8 LLKKQEEENARKDSRVRELEDYIDNLLVR 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999887653
No 188
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.21 E-value=1.1e+03 Score=30.08 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=61.7
Q ss_pred HhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH-HhHHH--HHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHH
Q 039801 85 AGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK-AISEL--KRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEIT 161 (466)
Q Consensus 85 a~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~-~Ls~L--K~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~ 161 (466)
+...-++.+-.+||.-=+|||++.-..|...= .||. +|+.- ++.+..+ +.+...+||+.+ ...
T Consensus 1031 ~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~------~~~~re~EIe~L-------~kk 1096 (1486)
T PRK04863 1031 AKRQMLQELKQELQDLGVPADSGAEERARARR-DELHARLSANRSRRNQLEK------QLTFCEAEMDNL-------TKK 1096 (1486)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH-HHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHH-------HHH
Confidence 34445555666778888999998876666553 5554 22221 1111111 334445555554 444
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH--hhhhhhhhhccCC
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIA--FNKSLEKKLNASG 201 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~--~n~~lekrl~~s~ 201 (466)
+++++.++...+.+|..+|.+=.-..+ ++...|+||+...
T Consensus 1097 L~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~ 1138 (1486)
T PRK04863 1097 LRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRE 1138 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhh
Confidence 588888888888888888887654444 3445777777653
No 189
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.12 E-value=6.1e+02 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhc
Q 039801 89 SIKAAYAELQMAQ 101 (466)
Q Consensus 89 slKaAY~qLQ~Ah 101 (466)
+++.||++|+..+
T Consensus 105 al~na~a~lehq~ 117 (221)
T PF05700_consen 105 ALDNAYAQLEHQR 117 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 6778888888765
No 190
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.03 E-value=6e+02 Score=25.44 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 153 SLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 153 ~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
.-++.|+..+.+|+.+.+.|+.|...|+.+|.++......-..+|
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777899999999999999999999998877554444444
No 191
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.93 E-value=1.8e+02 Score=22.80 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
+...|..+..|+.+...=-.++..|+.++..+...|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555555556666666666665544
No 192
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.74 E-value=1e+03 Score=31.19 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q 039801 71 RQRAVMEALVAKLFAGVTSIKAAYAELQMA 100 (466)
Q Consensus 71 ~~~~~~eali~~lFa~VSslKaAY~qLQ~A 100 (466)
++..+++..+..+-+.+-++..++.+||+-
T Consensus 1386 ~~lq~~qe~~e~~~~~~~~Lek~k~~l~~e 1415 (1930)
T KOG0161|consen 1386 QRLQELEEQIEAANAKNASLEKAKNRLQQE 1415 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345778888888999999999999998874
No 193
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=25.31 E-value=1.3e+02 Score=30.53 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHH
Q 039801 78 ALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDEL 120 (466)
Q Consensus 78 ali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL 120 (466)
.||..||+.+...... |=|||+ |++|-..|
T Consensus 7 qLI~~lf~RL~~ae~~---------prD~eA----e~lI~~~~ 36 (247)
T PF09849_consen 7 QLIDDLFSRLKQAEAQ---------PRDPEA----EALIAQAL 36 (247)
T ss_pred HHHHHHHHHHHhccCC---------CCCHHH----HHHHHHHH
Confidence 4888888887665544 878774 55554433
No 194
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.26 E-value=3.8e+02 Score=27.36 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
...++++..+.|.-++..|.-...|+...+..--|+..||.+++++.-.
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3557778888888888888777788877777777888888887766543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.19 E-value=2.2e+02 Score=28.77 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=7.0
Q ss_pred cCCCChHHHHHHHh
Q 039801 323 QKPSSSFAQFMRSK 336 (466)
Q Consensus 323 ~~p~s~F~kFC~~K 336 (466)
..|++..++=++++
T Consensus 246 ~yP~s~~a~~A~~r 259 (263)
T PRK10803 246 KYPGTDGAKQAQKR 259 (263)
T ss_pred HCcCCHHHHHHHHH
Confidence 44555555555444
No 196
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.12 E-value=1.9e+02 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 168 EAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 168 e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
++.....+|..|+.+++++...|..|+..+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666665543
No 197
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=25.11 E-value=2.4e+02 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+.|.+++.++-+++ ++|+..++..--|+..||.-+.++.
T Consensus 4 ~~l~~ql~~l~~~l-------~elk~~l~~Q~kE~~~LRntI~eC~ 42 (45)
T PF11598_consen 4 SQLIKQLSELNQML-------QELKELLRQQIKETRFLRNTIMECQ 42 (45)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666655555 7888888888889999999988774
No 198
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=25.06 E-value=3.1e+02 Score=27.01 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=18.7
Q ss_pred CcchhHHHHHHHHHHhcCCC--CCCCCC
Q 039801 265 SHRYFVFQSFVCKTMLEGFN--FPNFSP 290 (466)
Q Consensus 265 ~h~kyalEA~v~~~MF~gFe--~~~F~~ 290 (466)
.+.-+-+.+|+|+.||..=+ ++.|++
T Consensus 172 tDnI~ilidy~c~kf~~~~~qir~~fgI 199 (209)
T COG5124 172 TDNIEILIDYLCKKFFLKPEQIRKEFGI 199 (209)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 45567899999999998644 345554
No 199
>PHA00727 hypothetical protein
Probab=25.02 E-value=6.3e+02 Score=25.32 Aligned_cols=89 Identities=25% Similarity=0.392 Sum_probs=50.0
Q ss_pred HHHH---HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh--
Q 039801 118 DELK---AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKS-- 192 (466)
Q Consensus 118 sEL~---~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~-- 192 (466)
.||+ .|-+||+.|-.-+...+ .-..+..+-+.||. .|.+.|-.+-+.||.+|..-...-++
T Consensus 12 eelrkaqsleelkqkyee~qkqi~--------dgk~lkrlykvyek------refelk~~qf~qlkael~kkkkk~kkek 77 (278)
T PHA00727 12 EELRKAQSLEELKQKYEEAQKQIA--------DGKTLKRLYKVYEK------REFELKKQQFEQLKAELSKKKKKFKKEK 77 (278)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555 68899999986322111 11234445555553 24555566677777777543332211
Q ss_pred -------hhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHH
Q 039801 193 -------LEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTS 232 (466)
Q Consensus 193 -------lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~ 232 (466)
-.|.+|+ ...+.+|++..+.+.+....-
T Consensus 78 vdv~vkv~kkwins------------rlftaehyvamlqqs~dglql 112 (278)
T PHA00727 78 VDVRVKVVKKWINS------------RLFTAEHYVAMLQQSKDGLQL 112 (278)
T ss_pred cceeeehhHHHHhh------------hhccHHHHHHHHHhcccchhh
Confidence 1122332 136899999999998877654
No 200
>PRK14156 heat shock protein GrpE; Provisional
Probab=25.00 E-value=78 Score=30.53 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred cccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEEE-EEEe
Q 039801 404 RFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQS-QVYL 453 (466)
Q Consensus 404 ~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIkc-rVYL 453 (466)
.|||.+.|-|...... +...+-.|.=.+-+|+++|+.||+. +|-+
T Consensus 130 ~FDP~~HEAv~~~~~~-----~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 175 (177)
T PRK14156 130 SFDHNLHMAVQTLPAD-----DEHPADSIAQVFQKGYKLHERLLRPAMVVV 175 (177)
T ss_pred CCChhHhhcceeecCC-----CCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 7999999988653211 1123456777889999999999873 4443
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.92 E-value=7.8e+02 Score=25.41 Aligned_cols=128 Identities=18% Similarity=0.226 Sum_probs=70.3
Q ss_pred HHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 108 AIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 108 kI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
.|+.+|.-+-.=.+.+..+. .+...|.++|++.++.+..-..-+.++++++..=..+|..|++.|.
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q-----------~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~--- 97 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQ-----------NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV--- 97 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 37777754433223333332 1345577777777777755555566666666666666666665553
Q ss_pred Hhhhhhhhhhcc---CCC-CccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 039801 188 AFNKSLEKKLNA---SGP-ISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLVREMESANWDLDLA 251 (466)
Q Consensus 188 ~~n~~lekrl~~---s~~-ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M~~agwdl~~a 251 (466)
.++..|.+|++. +|. .+.+| ..+..-+-+.|+.=+.. ...|-++=|-++...+.-.-.|...
T Consensus 98 ~r~~~l~~raRAmq~nG~~t~Yid-vil~SkSfsD~IsRvtA-i~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 98 ERQELLKKRARAMQVNGTATSYID-VILNSKSFSDLISRVTA-ISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred HHHHHHHHHHHHHHHcCChhHHHH-HHHccCcHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356778887543 232 23333 23333445555544433 3456667777776666555555444
No 202
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=24.87 E-value=1.2e+02 Score=26.61 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCC-Cccchhh-hc-ccCCH----HHHHHHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGP-ISILENV-QL-SALST----SHFVQFLHFSLRSMTSFVK 235 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~-ls~~~~l-~~-s~~sp----~~F~~~l~~A~~Si~~F~K 235 (466)
-.|+.+++-=..|...||++|.++...|..|..-|+.-.. ..-.|.. .. .+..| .....-++.|+.-|.-...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 4677788888889999999999999999998865543211 0011100 00 11111 3445567777777777766
Q ss_pred HHHHHH
Q 039801 236 LLVREM 241 (466)
Q Consensus 236 ~Li~~M 241 (466)
-++.+.
T Consensus 84 kv~eLq 89 (96)
T PF11365_consen 84 KVMELQ 89 (96)
T ss_pred HHHHHh
Confidence 666544
No 203
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.75 E-value=7.6e+02 Score=25.19 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 039801 73 RAVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQ 152 (466)
Q Consensus 73 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q 152 (466)
...++++|...|..---=+.+|++ |.++. + .|+++ |+..++. -++|++++-
T Consensus 28 ~s~~D~f~q~~r~~~~nS~~efar-~lS~~-------~-------~e~e~---l~~~l~e-----------tene~~~~n 78 (246)
T KOG4657|consen 28 RSKIDSFIQSPRRRSMNSLVEFAR-ALSQS-------Q-------VELEN---LKADLRE-----------TENELVKVN 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------H-------HHHHH---HHHHHHH-----------HHHHHHHHH
Confidence 356777777777766666666766 55441 1 12221 2222222 245566665
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 153 SLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 153 ~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
.|+...+...-+++.++....+|++.|+..+..
T Consensus 79 eL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~ 111 (246)
T KOG4657|consen 79 ELKTEKEARQMGIEQEIKATQSELEVLRRNLQL 111 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565555566666666666666666655555443
No 204
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.63 E-value=1e+03 Score=26.63 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHh
Q 039801 74 AVMEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFL 131 (466)
Q Consensus 74 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~ 131 (466)
..++.-|..|++.+..=..|+-..... .|--++.+..+.+-.-.=...|..|++.|.
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~-~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKN-SDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 456667777777777777776666543 344555555555533322234555666766
No 205
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.60 E-value=1.7e+02 Score=34.44 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
+++++-.|-.|.+-|.--+-|.-.++.||+||.+||+--..+....++|
T Consensus 507 l~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 507 LVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666677789999999999998877777766554
No 206
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.04 E-value=3.4e+02 Score=32.00 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 153 SLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 153 ~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
..|-..+.++.+|..+...-|+||..|..+|+...+.|..|
T Consensus 113 ~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 113 KALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888888888888888888888877664
No 207
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.89 E-value=2e+02 Score=23.36 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=28.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 152 QSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 152 q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
+..++.....+.+++.+++....|...|+.++..+.+ ...+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~ 66 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 3344445555677777777777788888888776665 3335543
No 208
>smart00338 BRLZ basic region leucin zipper.
Probab=23.34 E-value=2.7e+02 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 039801 175 EARSLKRQLDDSIAF 189 (466)
Q Consensus 175 ei~~Lr~~L~e~~~~ 189 (466)
+...|+.+++.+...
T Consensus 41 en~~L~~~~~~l~~e 55 (65)
T smart00338 41 ENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 209
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=23.09 E-value=2e+02 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
++..++.+.+|..++.+.+.+|..|.++|+..
T Consensus 40 lr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~ 71 (732)
T KOG0614|consen 40 LRQRQTILEELIKEISKLEGEIAKLTNELDKL 71 (732)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 33334444555555555555555555544433
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.03 E-value=5.1e+02 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+..++++++..++..+....+++.++..-+.++..+.++++++..
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665566555555555555555555554433
No 211
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=2.1e+02 Score=31.97 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
..|.-+++-|-..+++|-+.+++++.++..=.-+=..-=.||+++.+++..|++|+.+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777888888888877665432222222234666777777888888654
No 212
>PRK12704 phosphodiesterase; Provisional
Probab=22.81 E-value=1.1e+03 Score=26.46 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=3.2
Q ss_pred ccCCHH
Q 039801 212 SALSTS 217 (466)
Q Consensus 212 s~~sp~ 217 (466)
+++|.+
T Consensus 148 a~lt~~ 153 (520)
T PRK12704 148 SGLTAE 153 (520)
T ss_pred hCCCHH
Confidence 455554
No 213
>PHA03011 hypothetical protein; Provisional
Probab=22.77 E-value=4.1e+02 Score=23.88 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
|--.+.|+-=++..|.||..||.+++.+...
T Consensus 84 ~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 84 ENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3345666677778899999999999877653
No 214
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.65 E-value=6e+02 Score=25.66 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 039801 230 MTSFVKLLVREM 241 (466)
Q Consensus 230 i~~F~K~Li~~M 241 (466)
+.+|++-|+.-+
T Consensus 116 ~~~~~~~lLpV~ 127 (238)
T PRK14143 116 KCNTLSEILPVV 127 (238)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 215
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.44 E-value=3.3e+02 Score=23.68 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
++++.....-=.-...+=......++.||..|+.+|..+.+....+++++.
T Consensus 55 lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 55 LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 216
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.40 E-value=2e+02 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
.+-++|+.|++.-+.+|..|..-.
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555555544433
No 217
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.39 E-value=7.1e+02 Score=24.00 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHh
Q 039801 229 SMTSFVKLLVREMES 243 (466)
Q Consensus 229 Si~~F~K~Li~~M~~ 243 (466)
++.+|++.|+.-+..
T Consensus 67 a~~~~~~~LLpv~Dn 81 (178)
T PRK14161 67 AIATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHHHHhhHHhH
Confidence 456666666655543
No 218
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=22.22 E-value=2.2e+02 Score=29.36 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
+.+.+|.++...+++.-+-...|.+++...-+.+.++|+++
T Consensus 224 rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V 264 (279)
T KOG0837|consen 224 RKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKV 264 (279)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444433334444444444444444444444
No 219
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.19 E-value=67 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 039801 175 EARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 175 ei~~Lr~~L~e~~~~n~~lek 195 (466)
|++-||+++.++..+|..||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~ 35 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEE 35 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888774
No 220
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.09 E-value=2.1e+02 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=10.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
..|+.++..-+.+|..|+.++..+..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 221
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.08 E-value=9.1e+02 Score=25.16 Aligned_cols=96 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 125 ELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEIT-----------IKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 125 ~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~-----------~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
++|+.|.. +..|..|-|.--+.||++ .++|+++.+.=-.|..++|+++++-...--..
T Consensus 24 ~ykq~f~~-----------~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q 92 (333)
T KOG1853|consen 24 EYKQHFLQ-----------MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ 92 (333)
T ss_pred HHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhh
Q 039801 194 EKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLVREMESANWDLDLAAKV 254 (466)
Q Consensus 194 ekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M~~agwdl~~aa~~ 254 (466)
+..|.. .++-+ ++|+.=-+--|..++.++-||..|-++
T Consensus 93 ~s~Led-------------dlsqt----------~aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 93 ESQLED-------------DLSQT----------HAIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHH-------------HHHHH----------HHHHHHHHHHHHHHHHhccHHHHhhhh
No 222
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.91 E-value=84 Score=28.74 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
..++++++.-+...+..+++|+.++..+..++..+++.+....
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~ 52 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEK 52 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666677777777777788888887775543
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.69 E-value=2.3e+02 Score=29.55 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 156 KTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
..+|.+-+||.-++..|++.|..|..+|..+...-..|+
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666555555444444443
No 224
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.67 E-value=1e+03 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHh
Q 039801 75 VMEALVAKLFAGVTSIKAAYAELQMA 100 (466)
Q Consensus 75 ~~eali~~lFa~VSslKaAY~qLQ~A 100 (466)
.....+..++..+..+|..+.+|+..
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~ 234 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEES 234 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888888888753
No 225
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.50 E-value=86 Score=28.37 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Q 039801 174 SEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 174 sei~~Lr~~L~e~~~~n~~lekr 196 (466)
.|++-||+++.|+..+|+.||.-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999988863
No 226
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=90 Score=31.77 Aligned_cols=14 Identities=7% Similarity=0.247 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcC
Q 039801 232 SFVKLLVREMESAN 245 (466)
Q Consensus 232 ~F~K~Li~~M~~ag 245 (466)
.+-+.+|+++..+|
T Consensus 139 ~dl~~viNeL~~sG 152 (247)
T COG3879 139 DDLQAVINELNISG 152 (247)
T ss_pred HHHHHHHHHHHhcc
Confidence 45677888888888
No 227
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=21.11 E-value=3.8e+02 Score=20.33 Aligned_cols=36 Identities=14% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
+..++++|..+| ..++..+..=...+..-..+|..+
T Consensus 23 i~~ev~~Q~~~l-------d~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 23 IGEEVEEQNEML-------DRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHhhH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666766666 445555444444444444444443
No 228
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.01 E-value=1.5e+02 Score=33.88 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=29.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 152 QSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 152 q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
++.+.+.-.++..|++++.+|+++|..|+++|..
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666778999999999999999999999963
No 229
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.99 E-value=5.5e+02 Score=23.10 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHH
Q 039801 215 STSHFVQFLHFSLRS 229 (466)
Q Consensus 215 sp~~F~~~l~~A~~S 229 (466)
.+..|+.-+...|+-
T Consensus 125 d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 125 DVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555555555543
No 230
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=20.90 E-value=2.4e+02 Score=24.35 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh--------hhhccCCCC--ccchhhhcccCCHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFNKSLE--------KKLNASGPI--SILENVQLSALSTSHFVQFLHFSL 227 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le--------krl~~s~~l--s~~~~l~~s~~sp~~F~~~l~~A~ 227 (466)
.+|++|+..-+.+|.....++..+..+-+.|+ .||-..|.. |.+.+ ...+|.+-|..++..+.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lEsi~~e--~~~lT~~E~~~ll~~~~ 76 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILESIFPE--PKDLTNDEFYELLEFLF 76 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc--chhcCHHHHHHHHHHHH
Confidence 34444444444444444444444444444443 244443421 33321 12477777777776654
No 231
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=20.89 E-value=8.4e+02 Score=24.33 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=54.5
Q ss_pred chHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 106 SEAIHLADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 106 pdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
++.|+.=|.+=+..+..|..++...+-...... ......++++-.-|+-|-.++-++++.+..+..+...-...++.
T Consensus 95 ~e~~rE~~~~~~e~~e~l~km~EslRi~~~~e~---~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~er 171 (225)
T KOG4848|consen 95 AEEIREFNNAKKEYKELLKKMRESLRILYTKEP---EKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLER 171 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHH
Confidence 567888888888888888888776554322211 12234566666688889999999999988877776665555554
Q ss_pred HHH
Q 039801 186 SIA 188 (466)
Q Consensus 186 ~~~ 188 (466)
+..
T Consensus 172 li~ 174 (225)
T KOG4848|consen 172 LIR 174 (225)
T ss_pred HHH
Confidence 444
No 232
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=20.88 E-value=1.7e+02 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 159 EITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 159 e~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
+..++.|..-+..||.+|..|+.++++
T Consensus 145 ~~~~~~L~~~l~~KD~~i~~l~~~~~~ 171 (171)
T PF09302_consen 145 QRQVESLKDLLKEKDKEIEKLRDKLED 171 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334477888899999999999998753
No 233
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.71 E-value=1e+03 Score=25.18 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=53.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHhhhhhhhhhccCCC--C
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLK----------------------RQLDDSIAFNKSLEKKLNASGP--I 203 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr----------------------~~L~e~~~~n~~lekrl~~s~~--l 203 (466)
.+||..++...-..+.+|+++...+..+...|+ ++++.+...++.|..+|.+... .
T Consensus 130 e~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~ 209 (310)
T PF09755_consen 130 EQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPP 209 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Confidence 345666666666777777777666665555544 4555666677778888876421 2
Q ss_pred ccchhh--hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039801 204 SILENV--QLSALSTSHFVQFLHFSLRSMTSFVKLLVREMESANWD 247 (466)
Q Consensus 204 s~~~~l--~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M~~agwd 247 (466)
+.-|.. ...+-+|+.+..-+...+ +=+.-|..+|..+.-.
T Consensus 210 s~~d~~~~~~~~Dt~e~~~shI~~Lr----~EV~RLR~qL~~sq~e 251 (310)
T PF09755_consen 210 SPRDTVNVSEENDTAERLSSHIRSLR----QEVSRLRQQLAASQQE 251 (310)
T ss_pred CcchHHhhcccCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 222221 223456666555544433 3233456666555443
No 234
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.59 E-value=4.3e+02 Score=32.17 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=10.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
++|+-++.+++.+|..|.+.+.
T Consensus 451 eele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 451 EELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444443
No 235
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=20.59 E-value=1.2e+02 Score=28.91 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHhHHHHHHHhhccCCC-ChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 118 DELKAISELKRSFLKKELDL-SPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 118 sEL~~Ls~LK~~y~~~~~~~-~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
-||++|+-||+.|-..+... ......+.+-+ +.|-+..|-+.+.++..+...+-|-..+|-.+
T Consensus 42 VElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~---kaL~rER~~L~k~m~~rls~eere~ly~kWgI 105 (161)
T PF11995_consen 42 VELRRLSFLKETFSEGGQAAGGGHTLSLASSI---KALRREREMLAKQMQKRLSREEREELYKKWGI 105 (161)
T ss_pred eehHHHHHHHHHhccCCcccCCCCcccHHHHH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCC
Confidence 58999999999999753211 11111122222 23334445555666666666666655666655
No 236
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.58 E-value=4.1e+02 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
+..|+...+.-+..+..++++++++
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 237
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=3.9e+02 Score=27.16 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFS-LRSMTSFVKLLV 238 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A-~~Si~~F~K~Li 238 (466)
.-..+|++.+.+++.+ ..|+.+.......-..|..|.+.. .+.| .=+|++|||.|+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~----------------------~edak~FaiQ~f~kdLl 127 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRD----------------------VEDAKKFAIQSFCKDLL 127 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Confidence 4455666666666655 777777755554445565665431 1111 126899999887
Q ss_pred HHHHhcCCCHHHHhhhh
Q 039801 239 REMESANWDLDLAAKVI 255 (466)
Q Consensus 239 ~~M~~agwdl~~aa~~i 255 (466)
.--.. |..|++++
T Consensus 128 eVaD~----Le~a~~~v 140 (236)
T KOG3003|consen 128 EVADN----LEKATECV 140 (236)
T ss_pred HHHHH----HHHHHHhc
Confidence 54333 55555555
No 238
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.42 E-value=1.3e+03 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=15.3
Q ss_pred HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhh
Q 039801 122 AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLM 155 (466)
Q Consensus 122 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~ 155 (466)
++++|...|..+ +|+.-.+.++|++++..+
T Consensus 303 ~~~~l~~~y~~~----hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 303 TIADLSTTMLAN----HPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHhhCCC----CHHHHHHHHHHHHHHHHH
Confidence 344444555543 566555555555554443
No 239
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.41 E-value=3e+02 Score=26.42 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
.+.|+.|.+.-..|+..|+++++.+...|..|++++.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777788888888877777777653
No 240
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.15 E-value=1.3e+02 Score=26.36 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 039801 173 ESEARSLKRQLDDS 186 (466)
Q Consensus 173 dsei~~Lr~~L~e~ 186 (466)
..+...|+++++.+
T Consensus 47 ~~~n~~L~~eI~~L 60 (105)
T PRK00888 47 KARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333444444333
No 241
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.08 E-value=6.5e+02 Score=25.07 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=38.0
Q ss_pred HhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHH-HhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHH
Q 039801 85 AGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELK-AISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIK 163 (466)
Q Consensus 85 a~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~ 163 (466)
+-|.-|..|-.+||.| -||=-....-+-..|+ .|-.|+-.=+......+ +.-.-.+..++.+|+.+|..+-
T Consensus 3 ekv~~LQ~AL~~LQaa-----~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~---~~~~~~~~~L~~~LrEkEErIL 74 (205)
T PF12240_consen 3 EKVERLQQALAQLQAA-----CEKREQLERRLRTRLERELESLRAQQRQGNSSGS---SSPSNNASNLKELLREKEERIL 74 (205)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---CCCCCcHHHHHHHHHHHHHHHH
Confidence 3567788999999988 3554444444444444 33333211111111111 0000123345555666666666
Q ss_pred HHHHHHh
Q 039801 164 KLEGEAE 170 (466)
Q Consensus 164 kLe~e~~ 170 (466)
.||+++-
T Consensus 75 aLEad~~ 81 (205)
T PF12240_consen 75 ALEADMT 81 (205)
T ss_pred HHHHHHH
Confidence 6666653
Done!