Query 039801
Match_columns 466
No_of_seqs 114 out of 137
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxa_A CGMP-dependent protein 95.0 0.024 8.1E-07 45.2 4.4 46 143-188 8-53 (67)
2 3nmd_A CGMP dependent protein 94.9 0.034 1.2E-06 44.9 5.2 33 155-187 35-67 (72)
3 1t6f_A Geminin; coiled-coil, c 84.4 1.2 4.1E-05 31.3 4.0 25 163-187 10-34 (37)
4 3a7o_A Autophagy protein 16; c 77.2 12 0.0004 30.1 7.9 57 142-198 14-70 (75)
5 3a6m_A Protein GRPE, HSP-70 co 76.6 3 0.0001 38.6 5.2 57 394-460 116-173 (177)
6 3nmd_A CGMP dependent protein 75.2 5.9 0.0002 31.9 5.8 44 155-198 21-64 (72)
7 1dkg_A Nucleotide exchange fac 75.0 3.3 0.00011 38.8 5.1 56 393-455 138-194 (197)
8 3a7p_A Autophagy protein 16; c 74.8 9.1 0.00031 34.8 7.7 56 144-199 66-121 (152)
9 3hnw_A Uncharacterized protein 74.2 34 0.0012 30.3 11.2 40 157-196 86-125 (138)
10 2no2_A HIP-I, huntingtin-inter 74.0 11 0.00037 32.2 7.6 54 144-197 34-91 (107)
11 3efg_A Protein SLYX homolog; x 73.4 9.8 0.00034 30.7 6.8 55 139-193 7-61 (78)
12 1m1j_C Fibrinogen gamma chain; 72.6 16 0.00054 37.9 9.9 46 143-188 88-133 (409)
13 3oja_B Anopheles plasmodium-re 71.7 98 0.0034 32.1 16.1 52 148-199 532-583 (597)
14 3vem_A Helicase protein MOM1; 71.2 9.9 0.00034 33.1 6.7 73 100-182 28-101 (115)
15 3oja_B Anopheles plasmodium-re 69.1 37 0.0013 35.3 12.0 48 142-189 505-552 (597)
16 3hnw_A Uncharacterized protein 68.9 15 0.00051 32.6 7.6 55 144-198 80-134 (138)
17 3mq9_A Bone marrow stromal ant 68.4 13 0.00045 37.8 8.3 67 114-180 396-470 (471)
18 3a7o_A Autophagy protein 16; c 67.2 12 0.0004 30.1 5.8 28 157-184 15-42 (75)
19 3a7p_A Autophagy protein 16; c 66.5 52 0.0018 29.9 10.7 56 142-197 78-133 (152)
20 1lwu_C Fibrinogen gamma chain; 65.6 13 0.00046 37.3 7.4 48 142-189 8-55 (323)
21 3ghg_C Fibrinogen gamma chain; 65.5 25 0.00087 36.5 9.6 45 144-188 89-133 (411)
22 3ol1_A Vimentin; structural ge 62.0 47 0.0016 28.4 9.3 55 141-198 36-93 (119)
23 1j1e_C Troponin I, TNI; THIN f 61.9 33 0.0011 31.9 8.7 74 111-187 26-106 (180)
24 3swk_A Vimentin; cytoskeleton, 60.8 22 0.00074 29.0 6.6 56 141-199 16-74 (86)
25 4fla_A Regulation of nuclear P 60.8 33 0.0011 30.8 8.4 60 140-199 87-146 (152)
26 4h22_A Leucine-rich repeat fli 60.4 11 0.00039 32.1 4.9 79 121-201 2-85 (103)
27 4ani_A Protein GRPE; chaperone 58.5 4.2 0.00014 38.8 2.2 48 401-454 164-212 (213)
28 2e7s_A RAB guanine nucleotide 51.1 18 0.00063 32.2 4.9 75 144-225 13-90 (135)
29 2ocy_A RAB guanine nucleotide 50.7 31 0.0011 31.3 6.5 63 162-231 46-111 (154)
30 3vmx_A Voltage-gated hydrogen 50.2 47 0.0016 24.7 6.1 22 163-184 21-42 (48)
31 3u1c_A Tropomyosin alpha-1 cha 49.5 58 0.002 27.1 7.6 55 144-198 42-96 (101)
32 3ajw_A Flagellar FLIJ protein; 48.6 1.2E+02 0.0042 25.6 11.1 78 116-194 38-115 (150)
33 4emc_A Monopolin complex subun 48.4 17 0.00058 34.1 4.4 28 163-190 30-57 (190)
34 2q6q_A Spindle POLE BODY compo 48.0 24 0.00083 28.1 4.6 35 163-197 6-47 (74)
35 3u59_A Tropomyosin beta chain; 47.6 65 0.0022 26.6 7.6 55 144-198 42-96 (101)
36 3ghg_A Fibrinogen alpha chain; 47.4 48 0.0016 35.6 8.1 86 146-234 131-233 (562)
37 1wlq_A Geminin; coiled-coil; 2 44.1 40 0.0014 27.7 5.5 25 163-187 41-65 (83)
38 3swk_A Vimentin; cytoskeleton, 44.1 56 0.0019 26.5 6.5 68 114-181 17-84 (86)
39 1m1j_B Fibrinogen beta chain; 44.1 1.4E+02 0.0049 31.4 11.1 53 146-198 135-192 (464)
40 2oa5_A Hypothetical protein BQ 43.9 70 0.0024 27.6 7.2 62 173-241 7-68 (110)
41 2eqb_B RAB guanine nucleotide 43.4 85 0.0029 26.5 7.5 56 162-224 14-69 (97)
42 1zxa_A CGMP-dependent protein 43.3 19 0.00064 28.6 3.3 40 160-199 11-50 (67)
43 1wt6_A Myotonin-protein kinase 42.9 55 0.0019 26.8 6.1 27 152-178 44-70 (81)
44 3iv1_A Tumor susceptibility ge 42.5 53 0.0018 26.7 5.9 34 157-190 43-76 (78)
45 3s4r_A Vimentin; alpha-helix, 41.1 1.2E+02 0.004 25.0 8.1 25 173-197 55-79 (93)
46 3e21_A HFAF1, FAS-associated f 41.1 14 0.00049 26.9 2.2 19 239-257 26-44 (45)
47 1i84_S Smooth muscle myosin he 41.0 69 0.0023 37.1 8.9 40 146-185 927-966 (1184)
48 3na7_A HP0958; flagellar bioge 40.1 1E+02 0.0035 29.2 8.7 53 146-198 32-84 (256)
49 3ol1_A Vimentin; structural ge 40.0 1.5E+02 0.0053 25.2 8.9 44 141-184 64-107 (119)
50 3qh9_A Liprin-beta-2; coiled-c 39.6 84 0.0029 25.7 6.7 22 162-183 56-77 (81)
51 1l8d_A DNA double-strand break 39.0 1.3E+02 0.0045 24.5 8.2 16 116-131 29-44 (112)
52 3m91_A Proteasome-associated A 38.7 1E+02 0.0036 22.9 6.6 42 145-186 8-49 (51)
53 1j1d_B Troponin T, TNT; THIN f 38.6 39 0.0013 28.9 4.8 38 149-186 45-89 (106)
54 1fzc_C Fibrin; blood coagulati 38.4 28 0.00095 35.0 4.5 46 145-190 3-48 (319)
55 3na7_A HP0958; flagellar bioge 34.8 3E+02 0.01 25.9 16.4 106 76-186 30-137 (256)
56 2v71_A Nuclear distribution pr 34.2 2E+02 0.0068 26.8 9.3 54 143-196 67-124 (189)
57 2k48_A Nucleoprotein; viral pr 33.1 1.4E+02 0.0048 25.6 7.3 21 169-189 77-97 (107)
58 2yy0_A C-MYC-binding protein; 32.8 53 0.0018 24.6 4.2 20 178-197 30-49 (53)
59 2fxo_A Myosin heavy chain, car 31.2 1.2E+02 0.004 26.1 6.9 47 142-188 79-125 (129)
60 2xdj_A Uncharacterized protein 31.1 1.9E+02 0.0065 23.4 7.6 34 163-196 23-56 (83)
61 3oja_A Leucine-rich immune mol 30.8 1.5E+02 0.0052 30.0 8.7 92 107-198 367-459 (487)
62 1t2k_D Cyclic-AMP-dependent tr 30.6 1.2E+02 0.004 22.7 5.9 22 148-169 24-45 (61)
63 1gd2_E Transcription factor PA 30.3 61 0.0021 25.6 4.4 29 163-191 39-67 (70)
64 3vkg_A Dynein heavy chain, cyt 30.3 1.9E+02 0.0066 37.5 10.9 54 144-197 2012-2065(3245)
65 3m9b_A Proteasome-associated A 30.2 44 0.0015 32.6 4.2 43 145-187 53-95 (251)
66 3trt_A Vimentin; cytoskeleton, 29.4 1.9E+02 0.0067 22.2 7.5 38 157-194 32-69 (77)
67 1m1j_B Fibrinogen beta chain; 29.0 2.9E+02 0.0098 29.1 10.5 24 77-100 113-136 (464)
68 1ik9_A DNA repair protein XRCC 28.7 3.7E+02 0.013 25.2 10.4 68 158-243 137-204 (213)
69 1gd2_E Transcription factor PA 28.7 97 0.0033 24.4 5.3 41 145-185 28-68 (70)
70 3s4r_A Vimentin; alpha-helix, 28.4 1.2E+02 0.0042 24.8 6.2 42 142-183 52-93 (93)
71 1wt6_A Myotonin-protein kinase 28.2 1.9E+02 0.0064 23.7 7.0 14 142-155 17-30 (81)
72 4ghu_A TNF receptor-associated 27.6 70 0.0024 29.3 5.0 31 158-188 5-35 (198)
73 1ytz_I Troponin I; muscle, THI 27.5 2.5E+02 0.0085 26.1 8.6 73 111-187 24-103 (182)
74 2v4h_A NF-kappa-B essential mo 27.4 3E+02 0.01 23.7 10.1 43 148-193 64-109 (110)
75 2yy0_A C-MYC-binding protein; 27.4 1E+02 0.0035 23.0 5.0 28 141-168 21-48 (53)
76 2dfs_A Myosin-5A; myosin-V, in 27.2 1.1E+02 0.0039 35.3 7.7 38 162-199 979-1016(1080)
77 1ykh_A RNA polymerase II media 27.0 87 0.003 26.8 5.1 32 157-188 73-104 (108)
78 1d7m_A Cortexillin I; coiled-c 26.9 2.4E+02 0.0082 23.6 7.5 31 158-188 30-60 (101)
79 3d5a_X RF1, peptide chain rele 26.5 4.6E+02 0.016 26.6 11.2 45 84-132 2-50 (354)
80 1kd8_A GABH AIV, GCN4 acid bas 25.9 1.3E+02 0.0046 21.0 4.9 32 156-187 4-35 (36)
81 1kd8_B GABH BLL, GCN4 acid bas 25.6 1.6E+02 0.0055 20.6 5.2 32 156-187 4-35 (36)
82 4etp_A Kinesin-like protein KA 25.5 1E+02 0.0034 31.6 6.2 12 404-415 192-203 (403)
83 2akf_A Coronin-1A; coiled coil 25.5 1.1E+02 0.0037 20.7 4.1 6 145-150 5-10 (32)
84 2zqm_A Prefoldin beta subunit 25.1 1.3E+02 0.0046 24.5 5.9 39 150-188 74-112 (117)
85 2k48_A Nucleoprotein; viral pr 25.1 87 0.003 26.8 4.7 30 161-190 36-65 (107)
86 4abx_A DNA repair protein RECN 25.0 3.6E+02 0.012 23.8 10.0 22 142-163 125-146 (175)
87 1j1d_C Troponin I, TNI; THIN f 24.2 3.7E+02 0.013 23.7 11.3 74 112-188 27-107 (133)
88 3u06_A Protein claret segregat 24.0 1.2E+02 0.004 31.3 6.4 48 142-196 6-53 (412)
89 2w6a_A ARF GTPase-activating p 23.8 2.3E+02 0.0079 22.0 6.4 44 150-193 17-60 (63)
90 1ci6_A Transcription factor AT 23.8 2.1E+02 0.0071 21.7 6.3 38 147-184 24-61 (63)
91 1uii_A Geminin; human, DNA rep 23.7 1.9E+02 0.0065 23.7 6.3 25 163-187 49-73 (83)
92 3mq7_A Bone marrow stromal ant 23.6 2.3E+02 0.008 24.7 7.1 30 155-184 73-102 (121)
93 1a93_B MAX protein, coiled coi 23.1 65 0.0022 22.4 2.9 23 176-198 9-31 (34)
94 1fxk_C Protein (prefoldin); ar 22.1 1.3E+02 0.0046 25.4 5.5 42 147-188 2-43 (133)
95 3a2a_A Voltage-gated hydrogen 22.0 1.9E+02 0.0065 22.1 5.5 26 160-185 25-50 (58)
96 3q8t_A Beclin-1; autophagy, AT 21.8 3.4E+02 0.011 22.3 8.2 36 160-195 25-60 (96)
97 2pjw_H Uncharacterized protein 21.4 3.4E+02 0.012 22.2 9.0 85 113-197 2-87 (88)
98 3viq_B Mating-type switching p 21.2 1.5E+02 0.005 24.4 5.2 30 143-172 5-34 (85)
99 1ic2_A Tropomyosin alpha chain 21.2 3E+02 0.01 21.6 7.6 30 157-186 24-53 (81)
100 2zxx_A Geminin; coiled-coil, c 20.9 2.6E+02 0.0088 22.7 6.5 20 163-182 37-56 (79)
101 2dfs_A Myosin-5A; myosin-V, in 20.7 9.9E+02 0.034 27.5 13.8 20 81-100 956-975 (1080)
102 2jee_A YIIU; FTSZ, septum, coi 20.2 3.5E+02 0.012 22.0 7.9 12 172-183 53-64 (81)
103 2ic6_A Nucleocapsid protein; h 20.1 1.2E+02 0.0041 24.7 4.3 27 162-188 7-33 (78)
104 1m1j_C Fibrinogen gamma chain; 20.1 3.2E+02 0.011 28.2 8.7 42 155-196 93-134 (409)
105 3ghg_A Fibrinogen alpha chain; 20.1 1.9E+02 0.0064 31.2 7.0 98 74-184 49-155 (562)
No 1
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=95.02 E-value=0.024 Score=45.19 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.+....++.+..++..+..+..||.+++.||.||..||.+|+...+
T Consensus 8 ~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 8 STSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678889999999999999999999999999999999987755
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.93 E-value=0.034 Score=44.86 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
++..+..++.||.++..||++|..|+.+|+...
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677789999999999999999999998763
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=84.37 E-value=1.2 Score=31.35 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+||..++..||.||.+||++=.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6899999999999999999876653
No 4
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=77.24 E-value=12 Score=30.12 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
+.+..-+.-+|+-++..|-.+.+|+..+..|--..++|..+|-.++-.|--|.+|+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 334444444444455555555555554444444444555555555555555655553
No 5
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=76.60 E-value=3 Score=38.57 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=41.1
Q ss_pred ceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeecCCccc
Q 039801 394 VSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSPVNVIE 460 (466)
Q Consensus 394 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~~~~~~ 460 (466)
+..+-. .|..|||.+.|-|.... + .+-.|.-.+-+|+++|+.||+ ++|-++.....|
T Consensus 116 v~~i~~-~Ge~FDP~~HeAv~~~~-------~--~~gtVv~v~qkGY~l~dRvLRpA~V~V~~~~~~~ 173 (177)
T 3a6m_A 116 VEEVPG-EGEAFDPRYHEAVGLLP-------G--EPGKVAKVFQRGFRMGEALVRPARVAVGEEKREE 173 (177)
T ss_dssp CEECCC-TTSBCCTTTEEEEEEEE-------S--STTBEEEEEECCEEETTEEEECEEEEEEECCC--
T ss_pred CEEeCC-CCCCCCHHHhhhhhccc-------C--CcCeEEEEeecCeeeCCEEecCeEEEEeCCCCcc
Confidence 444443 59999999999885422 1 345688889999999999998 688888655444
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.22 E-value=5.9 Score=31.86 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
++.++.++++-..|+++||.-|..|...|++.....+.|-..|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555888888999999999999999988887777766554
No 7
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=74.96 E-value=3.3 Score=38.81 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=39.9
Q ss_pred CceeEEecCCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEeec
Q 039801 393 PVSIFQVPRNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLSP 455 (466)
Q Consensus 393 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs~ 455 (466)
.+..+.. .|..|||.+.|-|..... +...+-.|.-.+-+|+++|+.||+ ++|-++.
T Consensus 138 Gv~~i~~-~G~~FDP~~HeAv~~~~~------~~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAE-TNVPLDPNVHQAIAMVES------DDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECC-CSSBCCTTSEEEEEEEEC------SSSCTTBEEEEEECEEEETTEEEECEEEEEEE
T ss_pred CCEEeCC-CCCCCCHHHhheeeeecC------CCCCcCeEEEEeeCCeeeCCEEecceEEEecC
Confidence 3444443 599999999998864321 112345677799999999999998 5777664
No 8
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.76 E-value=9.1 Score=34.81 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
....|..+++-+...+.-++.|+.+++.|...+..|+.++..+...+..+|.|+..
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888888999999999988888888888888888888877653
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.23 E-value=34 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
.++.-+..|.-++-..+-++..+++++.++...+..|+++
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444433
No 10
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=73.97 E-value=11 Score=32.15 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHH--HHhhhhHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 144 MLAEIQE--QQSLMKTYEI--TIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 144 l~aei~e--~q~l~~tye~--~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
|..++++ +++..+.-+. .+..|+.++..|+.|+..|++.|+.....+..+..++
T Consensus 34 L~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 34 LEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 4444444433 3789999999999999999999999999988888776
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.35 E-value=9.8 Score=30.70 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 139 PQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 139 ~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
.....++++|.++...+.--|.++..|...+-...-+|+.|+++|..+..+-+.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688999999999988899999999999999999999999996665544433
No 12
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.58 E-value=16 Score=37.94 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.|..+|.+++.++.+.+..++.||..+..-++.|..|++++.++..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5777888888889999999999999999888899999888877754
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.71 E-value=98 Score=32.05 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+++.+..++..+.-..++|.+++.+...+.+|++++......-+.|+++++.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444445666777777777777777777777777777777777654
No 14
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=71.22 E-value=9.9 Score=33.07 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=41.5
Q ss_pred hcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhccCCCChhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHH
Q 039801 100 AQNPYNSEAIHLADQAVVDELKAISELKRSFLKKELDLSPQV-TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARS 178 (466)
Q Consensus 100 Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~-~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~ 178 (466)
-|+|+.+|= +--||++|....+.-.+..=+.--+. +..+-|+.| +-+.|+..+++++++.-.|-.+++.
T Consensus 28 ~~~~~~sDP-------L~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae---~k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 28 IPFPVFNDP-------FLHELEKLRRESENSKKTFEEKKSILKAELERKMAE---VQAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp -----CCSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887 66799999888766665311111111 223333443 4556888888888887777666666
Q ss_pred HHHH
Q 039801 179 LKRQ 182 (466)
Q Consensus 179 Lr~~ 182 (466)
++.+
T Consensus 98 ~~~k 101 (115)
T 3vem_A 98 DKNL 101 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.13 E-value=37 Score=35.25 Aligned_cols=48 Identities=10% Similarity=-0.051 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
..+..+++..+...+..+...++++.++.++..+...|+++.+++...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 446666666666666666666666666655555555555555444443
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.86 E-value=15 Score=32.56 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
|..++++...-+-.|---+..++-+++.-..++..|++++.++...+.+||..++
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444445555556666666666666666666666666665544
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.40 E-value=13 Score=37.78 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHH-HhHHHHHHHhhccCCCChh-------hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 039801 114 QAVVDELK-AISELKRSFLKKELDLSPQ-------VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLK 180 (466)
Q Consensus 114 ~~vVsEL~-~Ls~LK~~y~~~~~~~~~~-------~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr 180 (466)
.-++.+|+ .|.+.+..|..-+...+.. ...|+++.-.++..++..|..+.+|+.+++.-.+||.+||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556665 6777777776421111111 1234555545555665556666666666666666665554
No 18
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=67.24 E-value=12 Score=30.14 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
+...++..|+.++..||.||..|++-+.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455889999999999999999998874
No 19
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.49 E-value=52 Score=29.88 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
+.+.-+|..+...++.....+..|+.|+.+=..+...+.+++..+...|..|-.|.
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666677777777788999999999999999999999999998877664
No 20
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=65.59 E-value=13 Score=37.33 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
+.|+.||..++.++...+..++.|+..+..-++.|..|+++|.++...
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888999999999999999998888999998888776643
No 21
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.52 E-value=25 Score=36.52 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
|..|+...+.++...+..+..||+.+...++.|..|++++..+..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888999999999999999999889888866654
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.05 E-value=47 Score=28.44 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMK---ESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e~~~K---dsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
...+..++...|..+..|- .|.|.|+..| +++|..||+.++++......||.++.
T Consensus 36 ~a~l~leldn~~~~~edfk---~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLR---EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 3556677777666665543 4555555554 34788888888888887777887764
No 23
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=61.88 E-value=33 Score=31.95 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HhhhHHHHHHHHHHH
Q 039801 111 LADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGE-------AEMKESEARSLKRQL 183 (466)
Q Consensus 111 aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e-------~~~Kdsei~~Lr~~L 183 (466)
-|=+.+-.|-+...+=|+.|......+- ..+.| -.+++|.+.+.|+..+.+|+.| +...|-||..|+.++
T Consensus 26 kA~e~L~~E~e~k~eEKkkiLaER~kPL-nid~L--se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV 102 (180)
T 1j1e_C 26 IAKQELEREAEERRGEKGRALSTRAQPL-ELAGL--GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKI 102 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC-CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCC--CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 3444556677788888889986433221 22221 1334566777777777666554 677789999999999
Q ss_pred HHHH
Q 039801 184 DDSI 187 (466)
Q Consensus 184 ~e~~ 187 (466)
.++.
T Consensus 103 ~DLr 106 (180)
T 1j1e_C 103 FDLR 106 (180)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8884
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.83 E-value=22 Score=29.05 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKES---EARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kds---ei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
.+.+..++...|..+..| -.|.|.|+..|.+ +|..||+-++++.-....||.++.+
T Consensus 16 ~~~l~~e~dn~~~~~edf---k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kves 74 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRL---REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVES 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466777777777666444 4677778777754 8999999999999988889988753
No 25
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.80 E-value=33 Score=30.84 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 140 QVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 140 ~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
+..+|++|+.+.+.++++.+....-.+.++.........-|++++.+..-.+.|...+..
T Consensus 87 Yn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 87 YNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456799999999999999999999899999988889999999999998888888777654
No 26
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.35 E-value=11 Score=32.12 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHhHHHHHHHhhc-----cCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 121 KAISELKRSFLKK-----ELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 121 ~~Ls~LK~~y~~~-----~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
.+|+++...|++- ++|. ..+.+.=+|+-+...+...|...-.|+.+.+.|-.++..+|...+.+...-..|..
T Consensus 2 dsL~EvEEKyrKAMVsnAQLDN--EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNAQLDN--EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp ------CCTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777762 1111 23556677777888888888888999999999999999999999999888888877
Q ss_pred hhccCC
Q 039801 196 KLNASG 201 (466)
Q Consensus 196 rl~~s~ 201 (466)
.|.++-
T Consensus 80 ~L~qRD 85 (103)
T 4h22_A 80 ALKQRE 85 (103)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 777764
No 27
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=58.55 E-value=4.2 Score=38.76 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCCcccccccccccccccccccccCCCCCceEEEEecCCceeCCeEEE-EEEEee
Q 039801 401 RNCRFSEVYMENVNDESAFSCEIVDSTVDVRVNFTVVPGFKIGKSLIQ-SQVYLS 454 (466)
Q Consensus 401 rG~~F~~~YMEsV~~~~~~~~~~~~~~~~~~VgFtV~PGFkVg~tVIk-crVYLs 454 (466)
.|..|||.+.|-|..... +...+-.|.-.+-+|++++++||+ ++|-++
T Consensus 164 ~Ge~FDP~~HeAv~~v~~------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va 212 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAEA------EGYEPNTVVEELQKGYKLKDRVLRPAMVKVS 212 (213)
T ss_dssp SSSCCCTTTEEEEEEECC------SSSCSSSEEEEEECCCEETTSCCSCEEEEEE
T ss_pred CCCCCCHHHceeeeeecC------CCCCCCcEEEEEeCCeEECCEEeeceEEEeC
Confidence 499999999999865331 122345678899999999999986 556443
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.09 E-value=18 Score=32.22 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhhHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHH
Q 039801 144 MLAEIQEQQSLMKTYEI---TIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFV 220 (466)
Q Consensus 144 l~aei~e~q~l~~tye~---~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~ 220 (466)
...++..++..++.||. -.+.|+.++...|.|+..|..+|.+........|.....- +.-+-.+|.++|.
T Consensus 13 ~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i-------e~ElE~LTasLFe 85 (135)
T 2e7s_A 13 SLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL-------NKEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34456666666777766 3566777888899999999999998877777777654431 1122357899998
Q ss_pred HHHHH
Q 039801 221 QFLHF 225 (466)
Q Consensus 221 ~~l~~ 225 (466)
.+=.-
T Consensus 86 EAN~M 90 (135)
T 2e7s_A 86 EANNL 90 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76433
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.67 E-value=31 Score=31.30 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHH---HHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQF---LHFSLRSMT 231 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~---l~~A~~Si~ 231 (466)
+.+|+.+....|.|+..|..+|.+........|+....-. .-+-.+|.++|..+ +..|++.-+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-------~ElEeLTasLFeEAN~MVa~ar~~~~ 111 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-------KEVEDLTASLFDEANNMVADARKEKY 111 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888999999999999988887777776554311 12235789999876 444554433
No 30
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=50.24 E-value=47 Score=24.72 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
..||..-..++-||.+|+.=|.
T Consensus 21 ~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 21 QHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHH
Confidence 4455566667778888877663
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.55 E-value=58 Score=27.09 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
.+.+|..++..+...|.-+.+++.++..--..+..-.+...++.+.+..|.+||.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777776666666666665555544555555555566666666766653
No 32
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=48.56 E-value=1.2e+02 Score=25.55 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 116 VVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 116 vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
.-.+|..|...+..|...-....+. +.-.+++...+.-+...+..+...+.++..-..++...+..|-+....-+.+|
T Consensus 38 ~~~~L~~L~~~~~~y~~~~~~~~~~-g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e 115 (150)
T 3ajw_A 38 AEEQLKMLIDYQNEYRSNLNTDMGN-GIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQ 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTCC--CCS-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887642221111 12245667777777788888888888888888888888888888777766665
No 33
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.38 E-value=17 Score=34.14 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=22.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
..|..+++.|+.||..|+++|+.+...-
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455588999999999999998776644
No 34
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=48.03 E-value=24 Score=28.14 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHhhhHHHHHHH-------HHHHHHHHHhhhhhhhhh
Q 039801 163 KKLEGEAEMKESEARSL-------KRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~L-------r~~L~e~~~~n~~lekrl 197 (466)
++|...++.|+.||.+| |.||..-+--|++||...
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666543 555555555566666544
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.63 E-value=65 Score=26.61 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
.+.+|..++..+...+.-+.+.+..+..-...+..-.+...++.+.+..|.+||.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555555555566666666667777777764
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.39 E-value=48 Score=35.61 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHHHHhhhhhhhhhccCCCCccchh
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKES-----------------EARSLKRQLDDSIAFNKSLEKKLNASGPISILEN 208 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kds-----------------ei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~ 208 (466)
..|+.||+.|+.--.-++|||..|+.|=. .-+.+.++|+.+.+.|..-.+- ...|..++-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p~~~---~q~Lp~lKm 207 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRD---RQHLPLIKM 207 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCCSCC---CC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCCccc---cccchhccc
Confidence 55566666666666666777777665421 2345667777766655322111 112334443
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHH
Q 039801 209 VQLSALSTSHFVQFLHFSLRSMTSFV 234 (466)
Q Consensus 209 l~~s~~sp~~F~~~l~~A~~Si~~F~ 234 (466)
..+..+.|.+|-..+..+----+.|.
T Consensus 208 rP~kD~Vp~~fKsq~q~~~~e~kal~ 233 (562)
T 3ghg_A 208 KPVPDLVPGNFKSQLQKVPPEWKALT 233 (562)
T ss_dssp --------------------------
T ss_pred ccccccCchhhhhhccccCHHHHHhh
Confidence 34445678888877776665555553
No 37
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.14 E-value=40 Score=27.73 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
++|..++..||.||..||+++.++.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999887664
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.10 E-value=56 Score=26.54 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039801 114 QAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKR 181 (466)
Q Consensus 114 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~ 181 (466)
..+..|+.++...=+.|+.+==+-......+++++..++..+...-..--.||+++..=..||..||+
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667888776655555543111123446788999999999977766777788887776667766653
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.09 E-value=1.4e+02 Score=31.40 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMK-----ESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~K-----dsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
.+++++...++.|...+++.++.++.. .+.|..|+..|+.+..+-..||..+.
T Consensus 135 ~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 135 KQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655432 34666666666666665556665543
No 40
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=43.91 E-value=70 Score=27.58 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039801 173 ESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLLVREM 241 (466)
Q Consensus 173 dsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~Li~~M 241 (466)
|.-++.|-.+|..+...|+.|-++++++|+.+.-+ ..+||..=...+..+. ..|++.-...+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d----~~LTp~qKea~I~s~~---~~Lss~A~~KI 68 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDD----SILTAAKRESIIVSSS---RALGAVAMRKI 68 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------C----CBCCHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----ccCCHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33456677778888888999999998766544333 2478876666555543 55555544443
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.39 E-value=85 Score=26.46 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLH 224 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~ 224 (466)
+..|++++...|.|+..|+..|.+........|+....- +.-+-.+|.++|..+=.
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i-------e~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL-------NKEVEDLTASLFDEANN 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 577888999999999999999998888777777665431 11223578999987633
No 42
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.35 E-value=19 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
.++++|.+.++.||..|..|...|++-......|...|..
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999988888888877765
No 43
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.91 E-value=55 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=12.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHHH
Q 039801 152 QSLMKTYEITIKKLEGEAEMKESEARS 178 (466)
Q Consensus 152 q~l~~tye~~~~kLe~e~~~Kdsei~~ 178 (466)
++.++.+|..-+.|+.|++.++.++..
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444444333
No 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.51 E-value=53 Score=26.69 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
-.+.++.+|+.|-..=+..|.-|+.+..|+...+
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888888888888888888887643
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.13 E-value=1.2e+02 Score=24.96 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 173 ESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 173 dsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
+++|..||.+|+++...|.+|+-.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666543
No 46
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=41.13 E-value=14 Score=26.91 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=14.4
Q ss_pred HHHHhcCCCHHHHhhhhCC
Q 039801 239 REMESANWDLDLAAKVIEP 257 (466)
Q Consensus 239 ~~M~~agwdl~~aa~~i~p 257 (466)
..+++.+|||..|++..-|
T Consensus 26 ~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 26 TLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHTTTCHHHHHTTC--
T ss_pred HHHHHcCCcHHHHHHHHcC
Confidence 4578999999999987543
No 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.01 E-value=69 Score=37.09 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=5.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
.++++++..+...+..+.+|+.+++.-+.++..|++++++
T Consensus 927 ~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~elee 966 (1184)
T 1i84_S 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966 (1184)
T ss_dssp HHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.14 E-value=1e+02 Score=29.22 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 039801 146 AEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 146 aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
++++.++..+......+.+++.++..-+.+|..+...++++..+-.+.++++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444455555554
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.98 E-value=1.5e+02 Score=25.16 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
...++++|..++..+..--..--.||.+++.=-.||..||+--+
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888865555556688887777778887776444
No 50
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=39.58 E-value=84 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
+.-|+.++..||+||.+|+.+|
T Consensus 56 l~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 56 VAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4456666666666666666655
No 51
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.02 E-value=1.3e+02 Score=24.55 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHh
Q 039801 116 VVDELKAISELKRSFL 131 (466)
Q Consensus 116 vVsEL~~Ls~LK~~y~ 131 (466)
+.+++..|...-..+.
T Consensus 29 l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445555544444443
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.70 E-value=1e+02 Score=22.95 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
+....+++.-+......-.+|..-++.-..+|..|+++|+.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666667888888888899999999999876
No 53
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=38.64 E-value=39 Score=28.87 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHhhhhHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHH
Q 039801 149 QEQQSLMKTYEITIKKLEGE-------AEMKESEARSLKRQLDDS 186 (466)
Q Consensus 149 ~e~q~l~~tye~~~~kLe~e-------~~~Kdsei~~Lr~~L~e~ 186 (466)
+++|.+.+.|+..+.+||+| +..+|-||..|+.+..++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556666666666666554 777889999999998877
No 54
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=38.40 E-value=28 Score=34.98 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
+.||..+...+..++..++.|+..++..+.+|..|++++.++...-
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556667788888888888888888888888887775543
No 55
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.76 E-value=3e+02 Score=25.95 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHHHHHHHHhHHHHHHHhhc--cCCCChhhHHHHHHHHHHHh
Q 039801 76 MEALVAKLFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAVVDELKAISELKRSFLKK--ELDLSPQVTIMLAEIQEQQS 153 (466)
Q Consensus 76 ~eali~~lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~vVsEL~~Ls~LK~~y~~~--~~~~~~~~~~l~aei~e~q~ 153 (466)
+.+-|..|=+.+..++..+..++... +.+...=.-.=.++..+...-..|..+ ....+-....|..||+-+..
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l-----~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEK-----LALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666542 122211112224444555444455542 22333333555666665555
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 154 LMKTYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 154 l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
.+...|..+..+..++..+..++..++.+++++
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444444444433
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.24 E-value=2e+02 Score=26.84 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 143 IMLAEIQEQQSLMKTY----EITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 143 ~l~aei~e~q~l~~ty----e~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
.|..++++.+..+..- ..++..||.++..--.....|+..|.++...|-.||..
T Consensus 67 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555544333322 23366777777777777777777777777777777654
No 57
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.13 E-value=1.4e+02 Score=25.57 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=14.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHh
Q 039801 169 AEMKESEARSLKRQLDDSIAF 189 (466)
Q Consensus 169 ~~~Kdsei~~Lr~~L~e~~~~ 189 (466)
++.|.+++..|+.||+++.+.
T Consensus 77 l~~R~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777653
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.83 E-value=53 Score=24.58 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 039801 178 SLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 178 ~Lr~~L~e~~~~n~~lekrl 197 (466)
.||.+++++...+..|..||
T Consensus 30 eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.24 E-value=1.2e+02 Score=26.08 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
..|...|.+.++-+...|-....|.++-+.=..++..|++.|+++..
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888888888888888899999999988754
No 60
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.10 E-value=1.9e+02 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
-.|+.++..=..||..||..+++.......+.+|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4466666666667777777777666655555443
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.80 E-value=1.5e+02 Score=30.00 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHhHhhHHHHHHHHHhHHHHHHHhhccCCCC-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 107 EAIHLADQAVVDELKAISELKRSFLKKELDLS-PQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 107 dkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~-~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
.+=.+-++.+...-+...++.+.+.......- -..+.....+......++.||.+.+++|.|......+....+++.+.
T Consensus 367 ~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (487)
T 3oja_A 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHH
Q ss_pred HHHhhhhhhhhhc
Q 039801 186 SIAFNKSLEKKLN 198 (466)
Q Consensus 186 ~~~~n~~lekrl~ 198 (466)
+...|.++++-+.
T Consensus 447 ~~~~~~~~~~~~~ 459 (487)
T 3oja_A 447 LAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhh
No 62
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.58 E-value=1.2e+02 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=8.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 039801 148 IQEQQSLMKTYEITIKKLEGEA 169 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~ 169 (466)
+++++.-+..++..-..|++++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.34 E-value=61 Score=25.63 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=15.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSIAFNK 191 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~ 191 (466)
..|+.....=..|...||..+..+...|.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333334556666666666665554
No 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.30 E-value=1.9e+02 Score=37.50 Aligned_cols=54 Identities=7% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039801 144 MLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKL 197 (466)
Q Consensus 144 l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl 197 (466)
+.+++++.+.-++.-+..+++.+++++.-+.+|..|+++++++.+....|+..+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666677777777777777777777777776666655443
No 65
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.17 E-value=44 Score=32.64 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+..+.+++.-++...+..++|..+++.-..||..||++|+.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666666666667788888888888888888886654
No 66
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.38 E-value=1.9e+02 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLE 194 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~le 194 (466)
.|..-+..|+.++.....++...|.+|.++.+.=..|+
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666655555555666655554444443
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.98 E-value=2.9e+02 Score=29.11 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHh
Q 039801 77 EALVAKLFAGVTSIKAAYAELQMA 100 (466)
Q Consensus 77 eali~~lFa~VSslKaAY~qLQ~A 100 (466)
+......|.-|-.|+..|.+.|.-
T Consensus 113 sn~Ts~~~~~i~~Iq~slk~~Q~Q 136 (464)
T 1m1j_B 113 SDTSTTMYQYVNMIDNKLVKTQKQ 136 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhccccc
Confidence 333444566666677888887763
No 68
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.72 E-value=3.7e+02 Score=25.19 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCccchhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 039801 158 YEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNASGPISILENVQLSALSTSHFVQFLHFSLRSMTSFVKLL 237 (466)
Q Consensus 158 ye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~s~~ls~~~~l~~s~~sp~~F~~~l~~A~~Si~~F~K~L 237 (466)
++.....|+.+.+....++..|+.+|+++......+|.-|- .-|+.+|..=..=||+.-+-|
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~------------------~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY------------------KRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhHHHHHHHHHHH
Confidence 34446778888888999999999999999999888888764 468999999888999999566
Q ss_pred HHHHHh
Q 039801 238 VREMES 243 (466)
Q Consensus 238 i~~M~~ 243 (466)
+...+.
T Consensus 199 l~~~~~ 204 (213)
T 1ik9_A 199 LNAAQE 204 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.65 E-value=97 Score=24.44 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
...|.++...+..++.....|..|...=-.+|..|..+|..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555543
No 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.39 E-value=1.2e+02 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQL 183 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L 183 (466)
+.-+++|.++|..+..-..--.+|+.|++.=..++..+|.+|
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444667777777775555555555555555445555555543
No 71
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.19 E-value=1.9e+02 Score=23.68 Aligned_cols=14 Identities=29% Similarity=0.314 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhh
Q 039801 142 TIMLAEIQEQQSLM 155 (466)
Q Consensus 142 ~~l~aei~e~q~l~ 155 (466)
+.|.+||+-.|++.
T Consensus 17 SALeaEIqAKQ~i~ 30 (81)
T 1wt6_A 17 EALEEEVLTRQSLS 30 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44666666655554
No 72
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.58 E-value=70 Score=29.25 Aligned_cols=31 Identities=3% Similarity=0.054 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 158 YEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 158 ye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.|..+++|+.++..+|.+|..|++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556789999999999999999999877765
No 73
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=27.46 E-value=2.5e+02 Score=26.12 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=45.1
Q ss_pred HhhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HhhhHHHHHHHHHHH
Q 039801 111 LADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGE-------AEMKESEARSLKRQL 183 (466)
Q Consensus 111 aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e-------~~~Kdsei~~Lr~~L 183 (466)
-|=+.+-.|-+...+-|+.|......|- ..+. -.+++|.+.+.|+..+..|+.| +...|-||..|+.++
T Consensus 24 kA~e~L~~E~e~k~eeKkkiLaER~kPL-nid~---se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 99 (182)
T 1ytz_I 24 LAVTEIEKEAAAKEVEKQNYLAEHSPPL-SLPG---SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKL 99 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Confidence 3444566777788888899985322111 1111 1234566667777666666554 677788888888887
Q ss_pred HHHH
Q 039801 184 DDSI 187 (466)
Q Consensus 184 ~e~~ 187 (466)
.++.
T Consensus 100 nDLr 103 (182)
T 1ytz_I 100 FDLR 103 (182)
T ss_dssp GGGT
T ss_pred HHHH
Confidence 6663
No 74
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.43 E-value=3e+02 Score=23.68 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHhhhhh
Q 039801 148 IQEQQSLMKTYEITIKKLEGEAEMKE---SEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 148 i~e~q~l~~tye~~~~kLe~e~~~Kd---sei~~Lr~~L~e~~~~n~~l 193 (466)
|+-++.-+..|. ...++|-.+|. .|+..|..+|..+.+.|..|
T Consensus 64 I~vLkaQv~IY~---~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 64 VPVLKAQADIYK---ADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---HHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 444444444555 45666666655 58899999999998888765
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.42 E-value=1e+02 Score=22.98 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039801 141 VTIMLAEIQEQQSLMKTYEITIKKLEGE 168 (466)
Q Consensus 141 ~~~l~aei~e~q~l~~tye~~~~kLe~e 168 (466)
...|..|.+++|..+........+|+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555554444444444443
No 76
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.22 E-value=1.1e+02 Score=35.25 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKKLNA 199 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekrl~~ 199 (466)
.++++.++...+.||..|+++++.+...++.+|+++.+
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666677776666666666666543
No 77
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=26.98 E-value=87 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
++|.++.-||.|++.|-.+|..+++..+++..
T Consensus 73 ARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~ 104 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHD 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999888754
No 78
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.91 E-value=2.4e+02 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 158 YEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 158 ye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.+.++..|++|...|.-.|..|..+|++..+
T Consensus 30 L~~~l~~l~~e~~~R~~~i~el~akidd~Lk 60 (101)
T 1d7m_A 30 LNSLLASLESEGAEREKRLRELEAKLDETLK 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445588888999999999999999888765
No 79
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=26.46 E-value=4.6e+02 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHhHhhHHHHHHHHHHh-cCC---CCchHHhHhhHHHHHHHHHhHHHHHHHhh
Q 039801 84 FAGVTSIKAAYAELQMA-QNP---YNSEAIHLADQAVVDELKAISELKRSFLK 132 (466)
Q Consensus 84 Fa~VSslKaAY~qLQ~A-h~P---ydpdkI~aAD~~vVsEL~~Ls~LK~~y~~ 132 (466)
|+.+..++.-|.+|... .-| -||++.+. +..|+..|..+-..|..
T Consensus 2 ~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~----~~ke~~~l~~~v~~~~~ 50 (354)
T 3d5a_X 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQS----LSRRYAEMGEVIGLIRE 50 (354)
T ss_dssp HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCchhhCHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34556667777777653 234 24555432 45555555555555543
No 80
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.88 E-value=1.3e+02 Score=20.99 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 156 KTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
+-.|.-+++|-.+...=..|+.+||+-|.++.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 34555666666666666778888888887764
No 81
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=25.59 E-value=1.6e+02 Score=20.61 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 156 KTYEITIKKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 156 ~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
.-.|.-+++|-.+...=..|+.+||+.|.++.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 33455555555555556667788888877664
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.49 E-value=1e+02 Score=31.57 Aligned_cols=12 Identities=50% Similarity=0.858 Sum_probs=6.1
Q ss_pred cccccccccccc
Q 039801 404 RFSEVYMENVND 415 (466)
Q Consensus 404 ~F~~~YMEsV~~ 415 (466)
.|=++|+|.|.+
T Consensus 192 S~~EIYnE~i~D 203 (403)
T 4etp_A 192 EFIEIYNENIVD 203 (403)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEecceeeE
Confidence 344555555543
No 83
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.46 E-value=1.1e+02 Score=20.67 Aligned_cols=6 Identities=0% Similarity=0.302 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039801 145 LAEIQE 150 (466)
Q Consensus 145 ~aei~e 150 (466)
+.++..
T Consensus 5 ee~~r~ 10 (32)
T 2akf_A 5 EEDVRN 10 (32)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.14 E-value=1.3e+02 Score=24.48 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 150 EQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 150 e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
.+..-+...+..+++|+.++.....++..|+.+|.+...
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445556777788888888888888888888876654
No 85
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.13 E-value=87 Score=26.82 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 039801 161 TIKKLEGEAEMKESEARSLKRQLDDSIAFN 190 (466)
Q Consensus 161 ~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n 190 (466)
.+++||.|+.+-+.++...++||.++++.-
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888899999999999999999887643
No 86
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=24.97 E-value=3.6e+02 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 039801 142 TIMLAEIQEQQSLMKTYEITIK 163 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~ 163 (466)
..++.++..++.+-|-|..++.
T Consensus 125 ~~ie~RL~~l~~L~RKyg~~~e 146 (175)
T 4abx_A 125 DRVEARLSALSKLKNKYGPTLE 146 (175)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHH
Confidence 3344445555555555543333
No 87
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.23 E-value=3.7e+02 Score=23.68 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHhhhHHHHHHHHHHHH
Q 039801 112 ADQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEG-------EAEMKESEARSLKRQLD 184 (466)
Q Consensus 112 AD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~-------e~~~Kdsei~~Lr~~L~ 184 (466)
|=+.+-.|-+...+=|+.|......+- ..+.+ -.+++|.+.+.|+..+.+|+. .+..+|-||..|+.++.
T Consensus 27 A~e~l~kE~e~k~eeKkkiLaER~~pL-~id~l--s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 27 AKQELEREAEERRGEKGRALSTRAQPL-ELAGL--GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCC-CCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCC--CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 444456677778888888886333111 11111 023455667777766666554 47778899999999998
Q ss_pred HHHH
Q 039801 185 DSIA 188 (466)
Q Consensus 185 e~~~ 188 (466)
++..
T Consensus 104 Dl~g 107 (133)
T 1j1d_C 104 DLRG 107 (133)
T ss_dssp HHC-
T ss_pred HHHc
Confidence 8853
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.02 E-value=1.2e+02 Score=31.28 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 142 TIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 142 ~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
..|..|+.+++... ++|+.+++.--.|+..++++|.+.+...++|-..
T Consensus 6 ~~l~~el~~~~~~~-------~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 6 AALSTEVVHLRQRT-------EELLRCNEQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666665555 6666666666666777777776666555555433
No 89
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.85 E-value=2.3e+02 Score=21.98 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 039801 150 EQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSL 193 (466)
Q Consensus 150 e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~l 193 (466)
|....+.+-|+-++.|=.--..--.|+..|..+|..+.+.|..|
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 44444555555555544444444456777788888888888765
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.79 E-value=2.1e+02 Score=21.74 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
++++++.-++..+..-..|+.++..=..|+..||.-|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444445555555555555555555443
No 91
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.71 E-value=1.9e+02 Score=23.73 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQLDDSI 187 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~L~e~~ 187 (466)
++|..++..++.||..||+.++++.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999999999999888774
No 92
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.64 E-value=2.3e+02 Score=24.66 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
++..+--++.|..+++....|+++||.+-.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333333345555555555555555555443
No 93
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.12 E-value=65 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc
Q 039801 176 ARSLKRQLDDSIAFNKSLEKKLN 198 (466)
Q Consensus 176 i~~Lr~~L~e~~~~n~~lekrl~ 198 (466)
+....+.++++.++|..|+..+.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 44567777888888888887764
No 94
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.12 E-value=1.3e+02 Score=25.36 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 147 EIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 147 ei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+++.++..+..|+..+..|+.++..=...|..+++-++.+..
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888888888888777777766666666665544
No 95
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.03 E-value=1.9e+02 Score=22.11 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLDD 185 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~e 185 (466)
.-++.||-+-..||-||++|++-|.+
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999999887743
No 96
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.76 E-value=3.4e+02 Score=22.30 Aligned_cols=36 Identities=3% Similarity=0.088 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 039801 160 ITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEK 195 (466)
Q Consensus 160 ~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lek 195 (466)
.-+++|+.+-..=|.+|..|+.++..+........+
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ 60 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR 60 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345666666666677777777777666665544443
No 97
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.40 E-value=3.4e+02 Score=22.25 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhHHHHHHHhhccCCCChhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hhh
Q 039801 113 DQAVVDELKAISELKRSFLKKELDLSPQVTIMLAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLDDSIA-FNK 191 (466)
Q Consensus 113 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~-~n~ 191 (466)
++.|.+|.+++=.|-.+....++......-.=..|||++=.-+=+---.+.+|=.....|-.|...|+++|..+.+ .|.
T Consensus 2 E~~vf~q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~ 81 (88)
T 2pjw_H 2 EAIVFSQKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQ 81 (88)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778877777766666543311100111234566653222233333455555566666699999999988776 566
Q ss_pred hhhhhh
Q 039801 192 SLEKKL 197 (466)
Q Consensus 192 ~lekrl 197 (466)
-||+-+
T Consensus 82 lle~s~ 87 (88)
T 2pjw_H 82 LMDRAA 87 (88)
T ss_dssp HHHTTT
T ss_pred HHHHhc
Confidence 666543
No 98
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.19 E-value=1.5e+02 Score=24.43 Aligned_cols=30 Identities=3% Similarity=0.068 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 039801 143 IMLAEIQEQQSLMKTYEITIKKLEGEAEMK 172 (466)
Q Consensus 143 ~l~aei~e~q~l~~tye~~~~kLe~e~~~K 172 (466)
.+.++|.+++.-.+..+..+..+++++...
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344555444444444444444444444433
No 99
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.15 E-value=3e+02 Score=21.58 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039801 157 TYEITIKKLEGEAEMKESEARSLKRQLDDS 186 (466)
Q Consensus 157 tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~ 186 (466)
..+.-++..+......+.||..|..++..+
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444444555555555555433
No 100
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.89 E-value=2.6e+02 Score=22.70 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.4
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 039801 163 KKLEGEAEMKESEARSLKRQ 182 (466)
Q Consensus 163 ~kLe~e~~~Kdsei~~Lr~~ 182 (466)
++|-.++..|+.||..||++
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999998886
No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.72 E-value=9.9e+02 Score=27.50 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=10.4
Q ss_pred HHHHHhHhhHHHHHHHHHHh
Q 039801 81 AKLFAGVTSIKAAYAELQMA 100 (466)
Q Consensus 81 ~~lFa~VSslKaAY~qLQ~A 100 (466)
.++-+.++.||..-.+|+..
T Consensus 956 ~~~~~e~~~L~~~l~~le~~ 975 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS 975 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555553
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.21 E-value=3.5e+02 Score=21.97 Aligned_cols=12 Identities=42% Similarity=0.374 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 039801 172 KESEARSLKRQL 183 (466)
Q Consensus 172 Kdsei~~Lr~~L 183 (466)
.+.|+..|+++.
T Consensus 53 L~~en~qLk~E~ 64 (81)
T 2jee_A 53 LERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 103
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.10 E-value=1.2e+02 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039801 162 IKKLEGEAEMKESEARSLKRQLDDSIA 188 (466)
Q Consensus 162 ~~kLe~e~~~Kdsei~~Lr~~L~e~~~ 188 (466)
+++||.|+..-..++...++||.+++.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666654
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.08 E-value=3.2e+02 Score=28.17 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 039801 155 MKTYEITIKKLEGEAEMKESEARSLKRQLDDSIAFNKSLEKK 196 (466)
Q Consensus 155 ~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~e~~~~n~~lekr 196 (466)
+..||.++..-+++++.-...+..++.+|+.+...-..|+.+
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333455555544444444444444445555444444444444
No 105
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.06 E-value=1.9e+02 Score=31.16 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=47.5
Q ss_pred HHHHHHHHH----HHHhHhhHHHHHHHHHHhcCCCCchHHhHhhHHH---HHHHH-HhHHHHHHHhhccCCCChhh-HHH
Q 039801 74 AVMEALVAK----LFAGVTSIKAAYAELQMAQNPYNSEAIHLADQAV---VDELK-AISELKRSFLKKELDLSPQV-TIM 144 (466)
Q Consensus 74 ~~~eali~~----lFa~VSslKaAY~qLQ~Ah~PydpdkI~aAD~~v---VsEL~-~Ls~LK~~y~~~~~~~~~~~-~~l 144 (466)
|.|..+|.+ |=..|--||..|-+||+.+ ..+++.+ ..+|+ ++..-++ ..+ .--+. ..|
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKns--------Kdseqy~k~~~E~Lr~rq~q~~d---NdN--tynE~S~EL 115 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNN--------KDSHSLTTNIMEILRGDFSSANN---RDN--TYNRVSEDL 115 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH--------HHHHHHHHHHHHTTSSHHHHHHH---HHH--HHHHTTHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhc--------hhHHHHHHHHHHHHHHHHHhhhc---cch--hHHHHHHHH
Confidence 444444443 4556777889999998876 2334333 23332 1111110 000 00111 245
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039801 145 LAEIQEQQSLMKTYEITIKKLEGEAEMKESEARSLKRQLD 184 (466)
Q Consensus 145 ~aei~e~q~l~~tye~~~~kLe~e~~~Kdsei~~Lr~~L~ 184 (466)
+.+|+.++..|.+-=..++-||+-|+.--++|.+|.--++
T Consensus 116 RRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444445555566666655555555555443
Done!