BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039804
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 23 KLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAEMLQCLDQIVQQKFK 82
KL SFE++SNLEV K ++ I+ +FR+G++G W++ L+ + + +D+ +++KFK
Sbjct: 261 KLCSFESLSNLEVNKE--GKLPNGIETKTFFRKGEIGGWRDTLSESLAEEIDRTIEEKFK 318
Query: 83 DSGF 86
SG
Sbjct: 319 GSGL 322
>pdb|3BFX|A Chain A, Crystal Structure Of Human Sulfotransferase Sult1c1 In
Complex With Pap
pdb|3BFX|B Chain B, Crystal Structure Of Human Sulfotransferase Sult1c1 In
Complex With Pap
Length = 296
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 8 FTSEEEEAGVVQEIVKLRSFENMS-NLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLT 66
F ++ + V+ +IV+ SFE M N +S +++ ++ + R+G VG WKNH T
Sbjct: 211 FMGKKVDETVLDKIVQETSFEKMKENPMTNRSTVSKSILDQSISSFMRKGTVGDWKNHFT 270
Query: 67 AEMLQCLDQIVQQKFKDS 84
+ D+I ++K + +
Sbjct: 271 VAQNERFDEIYRRKMEGT 288
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 204 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKTQLLRKGVSGDWKNHFTVA 260
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 261 QAEDFDKLFQEKMAD 275
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 204 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKTQLLRKGVSGDWKNHFTVA 260
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 261 QAEDFDKLFQEKMAD 275
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 213 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKTQLLRKGVSGDWKNHFTVA 269
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 270 QAEDFDKLFQEKMAD 284
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 213 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKTQLLRKGVSGDWKNHFTVA 269
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 270 QAEDFDKLFQEKMAD 284
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 205 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKAQLLRKGVSGDWKNHFTVA 261
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 262 QAEDFDKLFQEKMAD 276
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ + V+ + R+G G WKNH T
Sbjct: 205 TLEPEELNL---ILKNSSFQSMKENKMSNYSLLSVDYVVDKAQLLRKGVSGDWKNHFTVA 261
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 262 QAEDFDKLFQEKMAD 276
>pdb|1AQU|A Chain A, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQU|B Chain B, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQY|A Chain A, Estrogen Sulfotransferase With Pap
pdb|1AQY|B Chain B, Estrogen Sulfotransferase With Pap
pdb|1BO6|A Chain A, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
pdb|1BO6|B Chain B, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
Length = 297
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 8 FTSEEEEAGVVQEIVKLRSFENMSNLEVTK-SRINRVNIEIKNDVYFRQGKVGAWKNHLT 66
F + A +V I++ SF+ M N T + + + K + R+G +G WKNH
Sbjct: 212 FLERKPSAELVDRIIQHTSFQEMKNNPSTNYTMMPEEMMNQKVSPFMRKGIIGDWKNHFP 271
Query: 67 AEMLQCLDQIVQQKFKD 83
+ + D+ +Q+ KD
Sbjct: 272 EALRERFDEHYKQQMKD 288
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 9 TSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAE 68
T E EE + I+K SF++M +++ V+ + R+G G WKNH T
Sbjct: 205 TLEPEELNL---ILKNSSFQSMKENKMSNYSGGSVDYVVDKAQLLRKGVSGDWKNHFTVA 261
Query: 69 MLQCLDQIVQQKFKD 83
+ D++ Q+K D
Sbjct: 262 QAEDFDKLFQEKMAD 276
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 1 AEFLSQPFTSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGA 60
A+FL + + EE+ + E + F+N N V + I + + R+GK G
Sbjct: 263 ADFLGKKLS--EEQIQRLSEHLNFEKFKN--NGAVNMEDYREIGILADGEHFIRKGKAGC 318
Query: 61 WKNHLTAEMLQCLDQIVQQKFKDS 84
W+++ EM + ++ ++ KD+
Sbjct: 319 WRDYFDEEMTKQAEKWIKDNLKDT 342
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 1 AEFLSQPFTSEEEEAGVVQEIVKLRSFENM-SNLEVTKSRINRVNIEIKNDVYFRQGKVG 59
A+FL + + E+ +Q + + +FE +N V + I + + R+GK G
Sbjct: 263 ADFLGKKLSEEQ-----IQRLCEHLNFEKFKNNGAVNMEDYREIGILADGEHFIRKGKAG 317
Query: 60 AWKNHLTAEMLQCLDQIVQQKFKDS 84
W+++ EM + ++ ++ KD+
Sbjct: 318 CWRDYFDEEMTKQAEKWIKDNLKDT 342
>pdb|1G3M|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
pdb|1G3M|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
Length = 294
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 17 VVQEIVKLRSFENMSNLEVTKSRINRVNIEIKN---DVYFRQGKVGAWKNHLTAEMLQCL 73
+V I+ SF+ M N T + EI N + R+G G WKNH T + +
Sbjct: 218 LVDRIIHHTSFQEMKNNPST--NYTTLPDEIMNQKLSPFMRKGITGDWKNHFTVALNEKF 275
Query: 74 DQIVQQKFKDS 84
D+ +Q+ K+S
Sbjct: 276 DKHYEQQMKES 286
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 17 VVQEIVKLRSFENMSNLEVTKSRINRVNIEIKN---DVYFRQGKVGAWKNHLTAEMLQCL 73
+V I+ SF+ M N T + EI N + R+G G WKNH T + +
Sbjct: 218 LVDRIIHHTSFQEMKNNPST--NYTTLPDEIMNQKLSPFMRKGITGDWKNHFTEALNEKF 275
Query: 74 DQIVQQKFKDS 84
D+ +Q+ K+S
Sbjct: 276 DKHYEQQMKES 286
>pdb|1Q1Z|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap
pdb|1Q20|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap And Pregnenolone
pdb|1Q22|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(sult2b1b) In The Presence Of Dhea And Pap
Length = 299
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 3 FLSQPFTSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWK 62
FL +P E + V MSN + + ++ + + R+G G WK
Sbjct: 214 FLGRPLGKEALGSVVAHSTFSAMKANTMSNYTLLPPSL----LDHRRGAFLRKGVCGDWK 269
Query: 63 NHLTAEMLQCLDQIVQQKFK 82
NH T + D+ +++ +
Sbjct: 270 NHFTVAQSEAFDRAYRKQMR 289
>pdb|1Q1Q|A Chain A, Crystal Structure Of Human Pregnenolone Sulfotransferase
(Sult2b1a) In The Presence Of Pap
Length = 350
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 3 FLSQPFTSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWK 62
FL +P E + V MSN + + ++ + + R+G G WK
Sbjct: 212 FLGRPLGKEALGSVVAHSTFSAMKANTMSNYTLLPPSL----LDHRRGAFLRKGVCGDWK 267
Query: 63 NHLTAEMLQCLDQIVQQKFK 82
NH T + D+ +++ +
Sbjct: 268 NHFTVAQSEAFDRAYRKQMR 287
>pdb|2AD1|A Chain A, Human Sulfotransferase Sult1c2
pdb|2GWH|A Chain A, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
pdb|2GWH|B Chain B, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
Length = 298
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 8 FTSEEEEAGVVQEIVKLRSFENM-SNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLT 66
F ++ + V+ +IV SF+ M N S I ++ + R+G VG WK H T
Sbjct: 213 FIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFT 272
Query: 67 AEMLQCLDQIVQQKFKDS 84
+ D+ ++K D+
Sbjct: 273 VAQNERFDEDYKKKMTDT 290
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 10 SEEEEAGVVQEIVKLR-SFENMSNLE--VTKSRINRVNIEIKNDVYFRQGKVGAWKNHLT 66
SEE+ A V++ + K++ +F L V S++ R DVY + G+V K HL
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR-------DVYAKDGRVSYPKLHLP 296
Query: 67 AEMLQCL 73
+ LQCL
Sbjct: 297 LKTLQCL 303
>pdb|3HXL|A Chain A, Crystal Structure Of The Sheath Tail Protein (dsy3957)
From Desulfitobacterium Hafniense, Northeast Structural
Genomics Consortium Target Dhr18
Length = 446
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 1 AEFLSQPFTSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKND 50
EFL FT+ + +A V Q+I L SF + K+R+ RV I ND
Sbjct: 310 GEFL---FTASDNQALVEQDINTLTSFTADKGKQFAKNRVIRVLDGINND 356
>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
Length = 298
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 17 VVQEIVKLRSFENMS-NLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAEMLQCLDQ 75
++ I+ SFE M N V + + ++ + R+G G WKN+ T + D
Sbjct: 222 ILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDA 281
Query: 76 IVQQKFKDSGF 86
I + + +
Sbjct: 282 IYETEMSKTAL 292
>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
Length = 298
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 17 VVQEIVKLRSFENMS-NLEVTKSRINRVNIEIKNDVYFRQGKVGAWKNHLTAEMLQCLDQ 75
++ I+ SFE M N V + + ++ + R+G G WKN+ T + D
Sbjct: 222 ILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDA 281
Query: 76 IVQQKFKDSGF 86
I + + +
Sbjct: 282 IYETEMSKTAL 292
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 4 LSQPFTSEEEEAGVVQEIVKLRSFENMSNLEVTKSRINRVNIEIKNDVYFRQGKVGAWKN 63
++ P EE A ++Q+ + + +N++ RI V + ND+ R WKN
Sbjct: 139 IADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKN 198
>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
In Complex With Pap
Length = 305
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 52 YFRQGKVGAWKNHLTAEMLQCLDQIVQQKFKDS 84
+ R+G G WKN+ T + D+ Q+K S
Sbjct: 265 FMRKGMPGDWKNYFTVAQNEEFDKDYQKKMAGS 297
>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
Length = 306
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 52 YFRQGKVGAWKNHLTAEMLQCLDQIVQQKFKDS 84
+ R+G G WKN+ T + D+ Q+K S
Sbjct: 266 FMRKGMPGDWKNYFTVAQNEEFDKDYQKKMAGS 298
>pdb|3BBN|U Chain U, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 190
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 8 FTSEEEEAGVVQEIVKLRSFENMSNLEVTKSR 39
F E AGV+QE + R FEN ++ K+R
Sbjct: 114 FRREVMRAGVIQECKRRRFFENTQDVRKRKTR 145
>pdb|1ZD1|A Chain A, Human Sulfortransferase Sult4a1
pdb|1ZD1|B Chain B, Human Sulfortransferase Sult4a1
Length = 284
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 55 QGKVGAWKNHLTAEMLQCLDQIVQQK 80
+G+VG WK+ T M + D + +QK
Sbjct: 247 RGRVGLWKDIFTVSMNEKFDLVYKQK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,376,650
Number of Sequences: 62578
Number of extensions: 73763
Number of successful extensions: 195
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 31
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)