Your job contains 1 sequence.
>039806
MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV
QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL
VEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL
YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK
QGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRG
AMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVA
TSPDERKDILGQRLYPLVKKLKVITHIFVKGQFRFIFG
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039806
(398 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 372 1.2e-53 3
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 370 1.0e-52 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 361 1.0e-51 3
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 338 5.4e-49 3
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 325 6.0e-49 3
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 325 9.5e-49 3
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 318 4.4e-48 3
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 319 5.8e-48 3
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 306 7.9e-48 3
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 314 5.2e-47 4
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 304 2.0e-46 3
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 332 2.1e-46 3
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 332 2.1e-45 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 332 2.1e-45 3
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 287 3.4e-45 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 309 4.4e-45 3
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 294 2.4e-44 3
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 292 1.0e-42 3
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 319 2.6e-39 3
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 326 6.4e-38 3
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 326 6.7e-38 3
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 326 1.0e-37 3
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 303 3.4e-37 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 321 5.0e-37 3
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 292 5.1e-37 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 309 6.1e-37 3
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 320 6.5e-37 3
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 326 7.6e-37 3
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 321 1.2e-36 3
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 317 3.0e-36 3
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 298 4.1e-36 3
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 320 5.6e-36 3
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 278 1.2e-35 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 309 4.9e-35 3
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 320 1.8e-33 2
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 318 4.4e-33 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 302 5.9e-33 3
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 311 6.6e-33 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 323 5.8e-32 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 322 3.5e-31 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 322 5.9e-31 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 308 6.3e-31 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 336 1.1e-29 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 275 2.9e-29 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 321 7.1e-29 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 320 9.1e-29 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 320 9.1e-29 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 325 1.6e-28 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 323 1.8e-28 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 323 2.6e-28 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 323 2.6e-28 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 320 4.3e-28 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 320 5.5e-28 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 320 5.5e-28 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 320 5.5e-28 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 320 5.5e-28 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 320 5.5e-28 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 317 1.2e-27 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 309 1.3e-27 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 308 1.7e-27 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 306 2.8e-27 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 302 7.3e-27 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 308 1.0e-26 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 298 1.9e-26 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 293 6.6e-26 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 298 1.3e-25 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 298 1.3e-25 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 233 2.5e-24 2
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 215 9.1e-24 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 272 4.2e-23 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 278 1.7e-22 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 209 1.7e-21 2
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 268 3.5e-21 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 233 3.2e-19 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 220 9.5e-18 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 218 1.6e-17 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 218 1.6e-17 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 218 1.6e-17 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 217 2.1e-17 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 235 2.8e-17 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 217 4.0e-16 2
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 177 8.2e-15 2
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 193 9.8e-15 1
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 186 5.8e-14 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 179 3.4e-13 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 177 5.7e-13 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 166 5.1e-12 2
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 177 5.1e-12 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 168 9.9e-12 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 168 9.9e-12 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 165 1.2e-11 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 170 1.5e-11 2
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 164 2.9e-11 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 164 2.9e-11 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 164 2.9e-11 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 164 3.0e-11 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 170 4.0e-11 2
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 170 4.0e-11 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 165 8.7e-11 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 163 1.0e-10 2
WARNING: Descriptions of 495 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 372 (136.0 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 76/149 (51%), Positives = 96/149 (64%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 110 MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY+ ESA AIEKL G + ++YVGPF+RR +R + F N+YVKNL + T++
Sbjct: 170 QYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD 229
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG 147
L F E+GKITS V+ KD G SKGFG
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFG 258
Score = 253 (94.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 76/211 (36%), Positives = 112/211 (53%)
Query: 6 NSEARLSGIGNAFVKNLA-STIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYST 64
+S A + N +VKNLA ST D+ L F ++G I S+ V+ EGKSKG+GFV +
Sbjct: 206 DSTANKTKFTNVYVKNLAESTTDD-DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 264
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADR-----------IQEGSS-F--NNLYVKN 110
+ A A+E L G + E YVG ++++R ++E + F +NLYVKN
Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKN 324
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQF 170
LD +++E L E FS FG +TS + +D NGTSKG G +VA A + +A+ +Q
Sbjct: 325 LDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSG----FVAFATPEEATEAM--SQL 378
Query: 171 ERMRKERAELYKNINDEVDE--IELKQYFSQ 199
E LY I ++ + L+ FSQ
Sbjct: 379 SGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 409
Score = 155 (59.6 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 146 FGSKVLYVARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFS 198
F K YV RAQKK+ER+ LR ++E+ KE A+ LY KN++ + + +LK+ FS
Sbjct: 280 FDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFS 339
Query: 199 QCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
GT++S K+MR G SKG T E T + + K
Sbjct: 340 PFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 381
Score = 88 (36.0 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 33/130 (25%), Positives = 62/130 (47%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG----SKVLYVARAQKK 159
+LYV +LD ++T+ L + F + G + ++ + +D S G+G + ARA ++
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 160 AERKAI----LRAQFER----MRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+ +R + +R+ A ++ KN+++ +D L FS G I S K+
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query: 210 RTDRGISKGH 219
G SKG+
Sbjct: 157 VDSSGQSKGY 166
Score = 73 (30.8 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 306 HANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE 365
H+ P+M + + Q R G GN+ L+S L +P++
Sbjct: 496 HSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGA-LASNLSNATPEQ 554
Query: 366 RKDILGQRLYPLVKKLKVITHIFVKG 391
++ +LG+ LYPLV++++ + V G
Sbjct: 555 QRTMLGEVLYPLVEQVEAESAAKVTG 580
Score = 72 (30.4 bits), Expect = 5.3e-45, Sum P(3) = 5.3e-45
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 142 TSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ K SK LYVA AQ+K +R+ L+AQF ++R
Sbjct: 379 SGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVR 411
Score = 40 (19.1 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGP-GLASTI---FPVHP 254
SK +AIAQ K +R L+ +++ P + ++ PV+P
Sbjct: 385 SKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYP 427
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 370 (135.3 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 69/146 (47%), Positives = 99/146 (67%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +AR +G+GN FVKNL ++ N L +F KFG+I S KV ++GKS+GYGFV
Sbjct: 98 MWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ ++A AI+ L V E+YVG F+++ DR++ + NLY+KNLD D++E++L
Sbjct: 158 QFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF 146
EKF+EFGKI SL I+KD N +G+
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGY 243
Score = 203 (76.5 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 48/116 (41%), Positives = 69/116 (59%)
Query: 136 SKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEV 188
++ NGT FGSK LYV RAQKKAER+ +LR QF+ +E+ + +Y KN+N V
Sbjct: 258 AETVNGTK--FGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAV 315
Query: 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
E EL+++FSQCGTI+S K+M ++G SKG T E ++ + + G
Sbjct: 316 TEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG 371
Score = 181 (68.8 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 49/146 (33%), Positives = 75/146 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL + + L + F++FG I S + + +GY FV + PE A A E +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 76 QGATVERMELYVGPFIRRADR---IQEG-----------SSFNNLYVKNLDDDMTEEILV 121
G LYVG ++A+R ++E + +N+YVKN++ +TEE L
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
+ FS+ G ITS + D G SKGFG
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFG 347
Score = 164 (62.8 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
++ + N +VKN+ + +L + FS+ G I S+K++ ++GKSKG+GFV +STPE A+D
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359
Query: 71 AIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNN 105
A++ G LYV ++ DR +Q F N
Sbjct: 360 AVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGN 395
Score = 159 (61.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 55/219 (25%), Positives = 106/219 (48%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L+ F++F + S ++ + G+S YG+ + + + A AIEK
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V +R D + G N++VKNL + +T +L + F +FG I S ++
Sbjct: 87 NSLLNGKMIRVMWSVRAPDARRNG--VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 137 KDANGTSKGFGSKVLYVARAQKKAER---------KAILRAQF----ERMRKER--AELY 181
+G S+G+G A A + K I +F +R++ E LY
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLY 204
Query: 182 -KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
KN++ +V E L++ F++ G I S+ I + + + +G+
Sbjct: 205 MKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGY 243
Score = 71 (30.1 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 138 DANGTSKG--FGSKVLYVARAQKKAERKAILRAQF-ERMRKERAELYKNIN 185
DA T G F K LYVA AQKK +RK L+ QF R+ ++ ++N
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVN 409
Score = 55 (24.4 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 44/194 (22%), Positives = 78/194 (40%)
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY-----AKQGPGLAS----TIFPVH 253
I +VK K +AIAQ K +R L++ + A++ AS T P++
Sbjct: 358 IDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLY 417
Query: 254 PTLYQRALQVYQA-P-DFRHGGMIPNGXXXXXXXXXXXM---APDSVTQYRGAMMNGHAN 308
T + VYQ+ P ++ MI + M AP Q R ++ +A
Sbjct: 418 YTNTHPGM-VYQSYPLMWKSANMIGSSYPNSEAVTYPPMVANAPSKNRQNRIGKLDRNAV 476
Query: 309 FPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKD 368
+P N+ + + P+S+ + Q + G + + S +
Sbjct: 477 SYVP----NVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETV-----GMEMQ 527
Query: 369 ILGQRLYPLVKKLK 382
+LG+ L+PLV+KL+
Sbjct: 528 LLGELLHPLVEKLE 541
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 361 (132.1 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 73/149 (48%), Positives = 95/149 (63%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL +ID+ LH+ FS FG I S KV V G+SKGYGFV
Sbjct: 119 MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY T E+A AI+KL G + ++YVGPF+ + R G F N+YVKNL + +++E
Sbjct: 179 QYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDE 238
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG 147
L + F EFG TS VI +D G SKGFG
Sbjct: 239 ELNKVFGEFGVTTSCVIMRDGEGKSKGFG 267
Score = 234 (87.4 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 52/146 (35%), Positives = 87/146 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ ++ + +L+++F +FG S ++ EGKSKG+GFV + + A A++ L
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 76 QGATVERMELYVGPFIRRADR-----------IQEG---SSFNNLYVKNLDDDMTEEILV 121
G T + E +VG ++++R ++E S +NLYVKNLD+ +T++ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E F+ FG ITS + +D +G S+G G
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSG 370
Score = 201 (75.8 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 65/230 (28%), Positives = 113/230 (49%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPES 67
A G + +V +L +T+ + +L + F++ G + S +V + S GYG+V Y+TP+
Sbjct: 39 AAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQD 98
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
A A+ +L + + V +R D S N+++KNLD + + L E FS F
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSVR--DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAF 156
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVA--RAQKKAER--------KAILRAQF-ERMRKE 176
G I S ++ D +G SKG+G V Y AQ ++ K + F +++++
Sbjct: 157 GPILSCKVAVDPSGQSKGYGF-VQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD 215
Query: 177 RA-------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ +Y KN+++ + + EL + F + G +S IMR G SKG
Sbjct: 216 PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Score = 158 (60.7 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 42/111 (37%), Positives = 64/111 (57%)
Query: 138 DA-NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVD 189
DA NG K F K +V +AQKK+ER+ L+ +FE+ KE A+ LY KN+++ V
Sbjct: 282 DALNG--KTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVT 339
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+ +L+++F+ GTI+S K+MR G+S+G T E T + M K
Sbjct: 340 DDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Score = 152 (58.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL ++ + KL + F+ FG I S KV+ G S+G GFV +STPE A AI ++
Sbjct: 328 NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEM 387
Query: 76 QGATVERMELYVGPFIRRADR 96
G + LYV R+ DR
Sbjct: 388 NGKMIVTKPLYVALAQRKEDR 408
Score = 101 (40.6 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 43/158 (27%), Positives = 72/158 (45%)
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A E G A Q+G++ +LYV +LD +T+ L E F++ G++ S+ + +
Sbjct: 21 AAAEAAAAAAGAAAAAAGAAQQGTT--SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCR 78
Query: 138 D-ANGTSKGFGSKVLYV-----ARAQKKAERKAI----LRAQFE----RMRKERA-ELY- 181
D S G+G V Y +RA + A+ +R + +RK ++
Sbjct: 79 DMTTRRSLGYGY-VNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFI 137
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
KN++ +D L + FS G I S K+ G SKG+
Sbjct: 138 KNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGY 175
Score = 81 (33.6 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ NG K +K LYVA AQ+K +RKA L+AQF +MR
Sbjct: 386 EMNG--KMIVTKPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 67 (28.6 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 354 LSSMLVATSPDERKDILGQRLYPLVKKLK 382
L++ L +P++++ +LG+ LYPLV++L+
Sbjct: 577 LATRLANAAPEQQRTMLGENLYPLVEQLE 605
Score = 45 (20.9 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 31/130 (23%), Positives = 51/130 (39%)
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGM 274
++K +A+AQ K +R + L+ +++ P P P + R +Q+Y P GG
Sbjct: 393 VTKPLYVALAQRKEDRKARLQAQFSQMRP----VNMP--PAVGPR-MQMYP-P----GGP 440
Query: 275 IPNGXXXXXXXXXXXMAPDSVTQYRGAMMNGHA-------NFPMPLMLSNLQKPSYNYPI 327
P G M P Y+ ++ G NF MP+M Q+
Sbjct: 441 -PMGQQLFYGQGPPAMIPQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQ 499
Query: 328 SQPRAGQAAA 337
+P G+ A
Sbjct: 500 QRPGGGRRGA 509
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 338 (124.0 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 75/169 (44%), Positives = 101/169 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV EG SKGYGFV
Sbjct: 131 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T SA AIEK+ G + ++YVG F RA R++E G + N++VKN + +
Sbjct: 191 HFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLD 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+E L FS+FG+ITS V+ DA G KGFG +VA A + A +A+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFG----FVAFADQDAAGQAV 295
Score = 227 (85.0 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 56/148 (37%), Positives = 84/148 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D KL +FSKFG+I S+ V+ +GK KG+GFV ++ ++A A+EKL
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 76 QGATVERME--LYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEI 119
+ +E + L V ++++R E + NLYVKN+++D+ ++
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG 147
L + FS FG ITS + D NG SKGFG
Sbjct: 359 LRDHFSSFGTITSAKVMVDENGRSKGFG 386
Score = 152 (58.6 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ +++ L FS FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 339 RYQGV-NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEAT 397
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ + + LYV R+ DR
Sbjct: 398 AAVTDMNSKMIGAKPLYVALAQRKEDR 424
Score = 146 (56.5 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 35/97 (36%), Positives = 57/97 (58%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTI 203
L V RAQKK+ER A L+ ++E +++ER + Y KNI +++++ L+ +FS GTI
Sbjct: 310 LSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTI 369
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+S K+M + G SKG + E T+ + M +K
Sbjct: 370 TSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
Score = 134 (52.2 bits), Expect = 3.5e-20, Sum P(3) = 3.5e-20
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYS 63
PN+ ++ + ++ +L + L + FS G + S +V + S GY +V +
Sbjct: 50 PNATYSMASL---YIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQ 106
Query: 64 TP---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
P E ALD + E + G + M P RRA G+ N+++KNLD + +
Sbjct: 107 QPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRA-----GNG--NIFIKNLDRVIDNK 159
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ + FS FG I S ++ D G SKG+G
Sbjct: 160 SVYDTFSLFGNILSCKVATDDEGNSKGYG 188
Score = 92 (37.4 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 41/136 (30%), Positives = 62/136 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY+ +L D++E +L EKFS G + S+ + +D N + G YV Q
Sbjct: 55 SMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRD-NTSRLSLG--YAYVNFQQPADA 111
Query: 162 RKAILRAQFE----R-MR---------KERA---ELY-KNINDEVDEIELKQYFSQCGTI 203
+A+ FE R MR RA ++ KN++ +D + FS G I
Sbjct: 112 ERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNI 171
Query: 204 SSVKIMRTDRGISKGH 219
S K+ D G SKG+
Sbjct: 172 LSCKVATDDEGNSKGY 187
Score = 79 (32.9 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 319 QKPSYNYPI--SQPR--AGQAAANNLTNGNHRAAA---SNENLSS-MLVATSPDERKDIL 370
QKP Y P QP+ + Q A G ++ E L+S ML +P E+K +L
Sbjct: 562 QKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLL 621
Query: 371 GQRLYPLVKKL 381
G+R+Y L++K+
Sbjct: 622 GERIYALIEKM 632
Score = 74 (31.1 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKI 208
K +YV + Q +A+R ++ E K KN + +D+ +L FS+ G I+S +
Sbjct: 213 KKVYVGKFQPRAQR---MKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVV 269
Query: 209 MRTDRGISKG 218
M +G KG
Sbjct: 270 MTDAQGKPKG 279
Score = 70 (29.7 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 143 SKGFGSKVLYVARAQKKAERKAILRAQF 170
SK G+K LYVA AQ+K +R+A L +Q+
Sbjct: 405 SKMIGAKPLYVALAQRKEDRRAQLASQY 432
Score = 45 (20.9 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ----GPGLASTIFPVHPTLYQRALQVYQAPD 268
+A+AQ K +R + L Y ++ G ++ P LYQ Q Y P+
Sbjct: 415 VALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPN 466
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 325 (119.5 bits), Expect = 6.0e-49, Sum P(3) = 6.0e-49
Identities = 68/151 (45%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L E FS+FGK S+ + +D NG SKGFG
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234
Score = 225 (84.3 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 158 (60.7 bits), Expect = 6.0e-49, Sum P(3) = 6.0e-49
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 140 (54.3 bits), Expect = 7.8e-19, Sum P(4) = 7.8e-19
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 157
Score = 116 (45.9 bits), Expect = 7.8e-19, Sum P(4) = 7.8e-19
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 224 RDPNGKSKG 232
Score = 93 (37.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 6.0e-49, Sum P(3) = 6.0e-49
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 527 ASMLAAAPPQEQKQMLGERLFPLIQTM 553
Score = 73 (30.8 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 49 (22.3 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 325 (119.5 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 68/151 (45%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L E FS+FGK S+ + +D NG SKGFG
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234
Score = 225 (84.3 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 158 (60.7 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 140 (54.3 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 157
Score = 116 (45.9 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 224 RDPNGKSKG 232
Score = 93 (37.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 556 ASMLAAAPPQEQKQMLGERLFPLIQTM 582
Score = 73 (30.8 bits), Expect = 6.9e-40, Sum P(3) = 6.9e-40
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 49 (22.3 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 318 (117.0 bits), Expect = 4.4e-48, Sum P(3) = 4.4e-48
Identities = 68/151 (45%), Positives = 97/151 (64%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L + F +FG I+S V+ +D +G S+ FG
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFG 272
Score = 227 (85.0 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 55/146 (37%), Positives = 81/146 (55%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A A+EK+
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G ++ LYVG ++++R +E S NLY+KNLDD + +E L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E FSE+G +TS + + G S+GFG
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMSRGFG 375
Score = 189 (71.6 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ++D+ KL ++FS++G++ SSKV+++ +G S+G+GFV YS PE AL A+ ++
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM 392
Query: 76 QGATVERMELYVGPFIRRADR 96
G + R LY+ R+ DR
Sbjct: 393 NGKMIGRKPLYIALAQRKEDR 413
Score = 167 (63.8 bits), Expect = 4.4e-48, Sum P(3) = 4.4e-48
Identities = 49/127 (38%), Positives = 71/127 (55%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIE 192
NG S G VLYV RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +
Sbjct: 290 NGIS--LGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPV 252
LK+ FS+ G ++S K+M +G+S+G +A + E LR + G + P+
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGF-VAYSNPEEA--LRALSEMNGKMIGRK--PL 402
Query: 253 HPTLYQR 259
+ L QR
Sbjct: 403 YIALAQR 409
Score = 154 (59.3 bits), Expect = 9.5e-24, Sum P(3) = 9.5e-24
Identities = 36/130 (27%), Positives = 60/130 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFG 147
D G SKG+G
Sbjct: 170 DVTGRSKGYG 179
Score = 88 (36.0 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 40/157 (25%), Positives = 63/157 (40%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----SK 149
AD+ SS LY +LD +TE L + F + S+ + +D N S G+ S
Sbjct: 42 ADQTHPNSS---LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSN 98
Query: 150 VLYVARAQKKAERKAILRAQFERMRKER---------AELY-KNINDEVDEIELKQYFSQ 199
RA + + M R ++ KN++ +D L + FS
Sbjct: 99 PNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSS 158
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
GTI S K+ G SKG+ Q ++E ++ I
Sbjct: 159 FGTILSCKVAMDVTGRSKGY--GFVQFEKEESAQAAI 193
Score = 73 (30.8 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ NG K G K LY+A AQ+K +R+A L+A F ++R
Sbjct: 391 EMNG--KMIGRKPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 69 (29.3 bits), Expect = 4.4e-48, Sum P(3) = 4.4e-48
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 354 LSSMLVATSPDERKDILGQRLYPLVKK 380
L+S L + SP +R +LG++LYPLV++
Sbjct: 575 LTSSLASASPADRTRMLGEQLYPLVER 601
Score = 46 (21.3 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 221 MAIAQTKRERTSYLRIMYAK-QGPGLASTIFPVHP 254
+A+AQ K +R ++L+ ++++ + PG S HP
Sbjct: 404 IALAQRKEDRRAHLQALFSQIRAPGPMSGFH--HP 436
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 319 (117.4 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 67/151 (44%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L E FS+FGK S+ + +D +G SKGFG
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFG 234
Score = 225 (84.3 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 157 (60.3 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K KV++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 140 (54.3 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 157
Score = 115 (45.5 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 224 RDPSGKSKG 232
Score = 93 (37.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 557 ASMLAAAPPQEQKQMLGERLFPLIQTM 583
Score = 73 (30.8 bits), Expect = 3.3e-39, Sum P(3) = 3.3e-39
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 49 (22.3 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 306 (112.8 bits), Expect = 7.9e-48, Sum P(3) = 7.9e-48
Identities = 67/151 (44%), Positives = 91/151 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R E G+ F N+Y+KN DDM
Sbjct: 144 HFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ L E FS FGK S+ + D G SKGFG
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDHTGRSKGFG 234
Score = 224 (83.9 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 56/153 (36%), Positives = 81/153 (52%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G + +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS +G ITS + + G SKGFG
Sbjct: 305 IDDERLRKEFSPYGTITSAKVMTEG-GHSKGFG 336
Score = 164 (62.8 bits), Expect = 7.9e-48, Sum P(3) = 7.9e-48
Identities = 46/129 (35%), Positives = 72/129 (55%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDE 190
D NG K +++YV RAQK+ ER++ L+ +FE+M++ER Y KN++D +D+
Sbjct: 250 DMNG--KEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M T+ G SKG + E T + M + + ST
Sbjct: 308 ERLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 160 (61.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N +VKNL ID+ +L + FS +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYVKNLDDGIDDERLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRKEER---KAILTNQYMQRL 386
Score = 140 (54.3 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 45/142 (31%), Positives = 71/142 (50%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L + L++ FS G I S +V V S+ +S GY ++ + P E
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASR--RSLGYAYINFQQPADAER 67
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + E ++G V M P +R+ S N+++KNLDD + + L + FS
Sbjct: 68 ALDTMNFEVIKGRPVRIMWSQRDPGLRK-------SGVGNVFIKNLDDSIDNKALYDTFS 120
Query: 126 EFGKITSLVISKDANGTSKGFG 147
FG I S + D NG S+G G
Sbjct: 121 AFGNILSCKVVCDENG-SRGHG 141
Score = 113 (44.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 45/153 (29%), Positives = 71/153 (46%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGS-KVLYVARAQ 157
G +LYV +L D+TE +L EKFS G I S+ + +D A+ S G+ A A+
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAE 66
Query: 158 K----------KAERKAILRAQFER-MRKERAE--LYKNINDEVDEIELKQYFSQCGTIS 204
+ K I+ +Q + +RK KN++D +D L FS G I
Sbjct: 67 RALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNIL 126
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
S K++ + G S+GH +T+ T ++ M
Sbjct: 127 SCKVVCDENG-SRGHGFVHFETQEAATRAIQTM 158
Score = 89 (36.4 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V + + ER+A +F E +Y KN D++D+ L++ FS+ G SVK+M
Sbjct: 168 VFVGHFKSRKEREA----EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
G SKG
Sbjct: 224 MDHTGRSKG 232
Score = 81 (33.6 bits), Expect = 7.9e-48, Sum P(3) = 7.9e-48
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 303 MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATS 362
+ G + L + N+Q P + P + G+ A + G AS ML A
Sbjct: 503 LRGAPQYKYSLAVRNIQ-PMGSVPPGAQQVGEPAVH--IQGQEPLTAS------MLAAAP 553
Query: 363 PDERKDILGQRLYPLV 378
P E+K ++G+RLYPL+
Sbjct: 554 PQEQKQMIGERLYPLI 569
Score = 73 (30.8 bits), Expect = 2.4e-38, Sum P(3) = 2.4e-38
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 360 TKPLYVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 37 (18.1 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ 241
+A+AQ K ER + L Y ++
Sbjct: 365 VALAQRKEERKAILTNQYMQR 385
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 314 (115.6 bits), Expect = 5.2e-47, Sum P(4) = 5.2e-47
Identities = 69/151 (45%), Positives = 96/151 (63%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E G+ F N+YVKNL DM
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L + FS+FGK S+ + +D+NG S+GFG
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFG 234
Score = 229 (85.7 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 59/153 (38%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR G N +VKNL +D L +FS+FG QS KV+ G+S+G+GF+ + E A
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++ + G V LYVG +RA+R E F NLYVKNLDD
Sbjct: 245 QKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ ++ L E FS +G ITS + +++ SKGFG
Sbjct: 305 INDDRLKEVFSTYGVITSAKVMTESSH-SKGFG 336
Score = 153 (58.9 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 34/87 (39%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +I++ +L ++FS +G I S+KV+ ++ SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDSINDDRLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 149 (57.5 bits), Expect = 5.2e-47, Sum P(4) = 5.2e-47
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
NG K ++LYV RAQK+AER+ L+ +FE+M++ER Y KN++D +++
Sbjct: 252 NG--KEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
LK+ FS G I+S K+M T+ SKG + E T
Sbjct: 310 LKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEAT 347
Score = 143 (55.4 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 50/183 (27%), Positives = 86/183 (46%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L+++FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M + P +RR S N+++KNL++ + + L + FS F
Sbjct: 70 DTMNFEMIKGQPIRIMWSHRDPGLRR-------SGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + + +G S+GFG A +KA +RK + F+ +K
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV-GHFKSRQKRE 180
Query: 178 AEL 180
AEL
Sbjct: 181 AEL 183
Score = 81 (33.6 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 147 GSKVLYVARAQKKAERKAILRAQFERMRKERAEL 180
G+K LYVA AQ+K ERKAIL Q+ R R R+ L
Sbjct: 359 GTKPLYVALAQRKEERKAILTNQYRR-RLSRSVL 391
Score = 53 (23.7 bits), Expect = 5.2e-47, Sum P(4) = 5.2e-47
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 356 SMLVATSPDERKDILGQRLYPLV 378
SML A E+K ++G+RLY L+
Sbjct: 529 SMLDAAPLHEQKQMIGERLYSLI 551
Score = 39 (18.8 bits), Expect = 5.2e-47, Sum P(4) = 5.2e-47
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLY 257
+A+AQ K ER + L Y ++ + F PT Y
Sbjct: 365 VALAQRKEERKAILTNQYRRRLSRSVLSSFQ-QPTSY 400
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 304 (112.1 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 66/151 (43%), Positives = 91/151 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSS---FNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E G+ F N+Y+KN +D+
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E L F+EFGK S+ + D G S+GFG
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFG 234
Score = 202 (76.2 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 52/146 (35%), Positives = 77/146 (52%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN ID+ KL IF++FG S V+ + G+S+G+GFV + A A+ ++
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + LYVG +R +R E F NLYVKNLDD + +E L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
++F+ +G ITS + D G S+GFG
Sbjct: 312 KEFAPYGTITSAKVMTDG-GHSRGFG 336
Score = 163 (62.4 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 45/129 (34%), Positives = 73/129 (56%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDE 190
+ NG K +VLYV RAQK+ ER+ L+ +FE++++ER + Y KN++D +D+
Sbjct: 250 EMNG--KELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
+L++ F+ GTI+S K+M TD G S+G + E T + M + + ST
Sbjct: 308 EKLRKEFAPYGTITSAKVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGR----IVSTK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 159 (61.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ KL + F+ +G I S+KV+ + G S+G+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM-TDGGHSRGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEER---KAILTNQYIQRL 386
Score = 150 (57.9 bits), Expect = 4.4e-23, Sum P(3) = 4.4e-23
Identities = 45/150 (30%), Positives = 76/150 (50%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQY 62
NS + + +V +L + + L+Q FS G I S +V V+++ +S GY ++ +
Sbjct: 2 NSGGPAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITR--RSLGYAYINF 59
Query: 63 STP---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
P E ALD + E ++G + M P +R+ S N+++KN+D+ +
Sbjct: 60 QQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRK-------SGVGNIFIKNMDESIDN 112
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ L + FS FG I S + D NG SKG+G
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENG-SKGYG 141
Score = 88 (36.0 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L +KFS G+I S+ + +D T + G Y+ Q+ A+ +
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVI-TRRSLG--YAYI-NFQQPADAEC 67
Query: 165 IL-------------RAQFER----MRKERA-ELY-KNINDEVDEIELKQYFSQCGTISS 205
L R + + +RK ++ KN+++ +D L FS G I S
Sbjct: 68 ALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K++ + G SKG+ +T+ + M
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETM 158
Score = 80 (33.2 bits), Expect = 9.0e-17, Sum P(4) = 9.0e-17
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V + + ER+A + A+ E +Y KN +++D +LK F++ G SV +M
Sbjct: 168 VFVGHFKSRKEREAEMGAK----AVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVM 223
Query: 210 RTDRGISKG 218
+RG S+G
Sbjct: 224 TDERGRSRG 232
Score = 73 (30.8 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 360 TKPLYVALAQRKEERKAILTNQYIQRLASIRA 391
Score = 70 (29.7 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A E+K +LG+RLYPL++ L
Sbjct: 542 ASMLAAAPLKEQKQLLGERLYPLIQIL 568
Score = 59 (25.8 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQA--PDFRHG-GMIPN 277
+A+AQ K ER + L Y ++ + + P PT YQ+ Y P R +PN
Sbjct: 365 VALAQRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPN 424
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 332 (121.9 bits), Expect = 2.1e-46, Sum P(3) = 2.1e-46
Identities = 72/151 (47%), Positives = 94/151 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 126 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR +E ++F N+YVKN+D + +
Sbjct: 186 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYS 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
EE + FS FGKITS+ + KD +G SKGFG
Sbjct: 246 EESFEKLFSPFGKITSIYLEKDQDGKSKGFG 276
Score = 225 (84.3 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 54/146 (36%), Positives = 78/146 (53%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ ++FS FG I S + Q+GKSKG+GFV + ESA+ A+E+L
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ ++YVG ++ +R++E + NL+VKNLDD + E L
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLE 353
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+F FG ITS + D G SKGFG
Sbjct: 354 EEFKPFGTITSAKVMVDEAGKSKGFG 379
Score = 183 (69.5 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 43/106 (40%), Positives = 63/106 (59%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL TID+ KL + F FG I S+KV+V + GKSKG+GFV ++TPE A
Sbjct: 331 AKYQGV-NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEA 389
Query: 69 LDAIEKLQGATVERMELYVG----PFIRRADRIQEGSSFNNLYVKN 110
AI ++ + LYV +RR+ Q+ + N + ++N
Sbjct: 390 TKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQN 435
Score = 146 (56.5 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 46/146 (31%), Positives = 68/146 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 112
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L +E + + D S N+++KNL + + L + FS FGKI S
Sbjct: 113 LNYNPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKA 160
++ D G SK FG A A + A
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAA 196
Score = 142 (55.0 bits), Expect = 2.1e-46, Sum P(3) = 2.1e-46
Identities = 42/120 (35%), Positives = 60/120 (50%)
Query: 147 GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQ 199
G K+ YV RAQKK ER L+ Q+E +R E+ Y KN++D +D +L++ F
Sbjct: 300 GQKI-YVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKP 358
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
GTI+S K+M + G SKG T E T + M + G P++ L QR
Sbjct: 359 FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYVALAQR 413
Score = 71 (30.1 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V + K +R++ +FE M+ +Y KNI+ E ++ FS G I+S+ +
Sbjct: 210 VFVGKHISKKDRES----KFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLE 265
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 266 KDQDGKSKG 274
Score = 61 (26.5 bits), Expect = 2.1e-46, Sum P(3) = 2.1e-46
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+R S +L++++ + D++K ILG+ LYP +
Sbjct: 532 NRNQTSKRDLAAIISSVPQDQQKRILGEELYPKI 565
Score = 50 (22.7 bits), Expect = 7.8e-37, Sum P(3) = 7.8e-37
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 149 KVLYVARAQKKAERKAILRAQFE---RMRKERA 178
K LYVA AQ+K R++ L Q + +MR + A
Sbjct: 404 KPLYVALAQRKDVRRSQLEQQIQARNQMRMQNA 436
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 332 (121.9 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 66/138 (47%), Positives = 87/138 (63%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVGPFI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ F+ +G+ITS+++ D
Sbjct: 210 RQLFNPYGEITSMIVKMD 227
Score = 162 (62.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 65/218 (29%), Positives = 101/218 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA-ER--------KAILRAQFERMRKERA---- 178
S ++ D G SK +G + K+A E+ K + F + + ERA
Sbjct: 132 SCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIK-KSERATNDT 190
Query: 179 ---ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
LY KN D V E L+Q F+ G I+S+ I++ D
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVKMD 227
Score = 143 (55.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID++ L ++F FG I S+KV+ ++ +SKG+GFV +++ E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 511 HLKIINGKPLYVGLAEKREQRL 532
Score = 140 (54.3 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 150 VLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGT 202
+LYV Q +A R AIL+A+F+ + E LY KN++D +D+I L++ F GT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
I+S K+MR ++ SKG ++ E + M+ K
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Score = 114 (45.2 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
NLY+KNLDD + + +L E F FG ITS + +D SKGFG +V A ++ KA
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFG----FVCFASQEEANKA 506
Query: 165 I 165
+
Sbjct: 507 V 507
Score = 108 (43.1 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L Q+F+ +G+I S ++V + K++ + F+ Y+ ESA +A++ L
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMDNL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 64 (27.6 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 330 PRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE-RKDILGQRLYPLV 378
P N + N + +N L++ +A++P +K +LG+ L+PLV
Sbjct: 778 PNKNANKVNTMNNNMNVNFNNNSTLTAAALASAPPSMQKQVLGENLFPLV 827
Score = 49 (22.3 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNIN 185
K K LYV A+K+ +R + L+ +F RM R + +N
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHMNNPLN 553
Score = 45 (20.9 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 327 ISQPRAGQAAANNLTNGNHRAAASNENLSSM 357
+ Q Q NN+ N N+RA + NL +M
Sbjct: 683 LQQQGNNQLLNNNMRNMNNRANRNMGNLGNM 713
Score = 45 (20.9 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 316 SNLQKPSYNYPISQPRAGQAAANN-LTNGNHRAAASNENLSS 356
SN S N I+ A NN TN N+ + +S N S
Sbjct: 358 SNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGS 399
Score = 43 (20.2 bits), Expect = 3.2e-43, Sum P(3) = 3.2e-43
Identities = 19/96 (19%), Positives = 40/96 (41%)
Query: 297 QYRGAMMNGHANFPM--PLMLSNLQKPSYNYP---ISQPRAGQAA--ANNLTNGNHRAAA 349
++R + H N P+ P+ ++ Q P + +S R A NNL + H+ AA
Sbjct: 538 RFRMHPIRHHMNNPLNTPMQYASPQSPQLQFSQNTLSYGRPVITAFNQNNLISWRHQQAA 597
Query: 350 SNENLSSMLVATSPDERKDILGQRLYPLVKKLKVIT 385
+ + V +++ L + ++++ T
Sbjct: 598 QQQAVHQQAVHQQAAQQQLNFNTNLRGQINQMRLYT 633
Score = 40 (19.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 338 NNLTNGNHRAAASNENLSSML 358
NN T GN+ + +N N S +
Sbjct: 374 NNNTAGNNNSTNNNNNSGSSM 394
Score = 38 (18.4 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 90 FIRRADRIQEGSSFNNLYVKNLDDD-MTEEILVEKFSEFGKITSLVISK----DANGTSK 144
FI AD ++ +NL K + DD +E K E TS ++ DA+ T K
Sbjct: 235 FINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 332 (121.9 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 66/138 (47%), Positives = 87/138 (63%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVGPFI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ F+ +G+ITS+++ D
Sbjct: 210 RQLFNPYGEITSMIVKMD 227
Score = 162 (62.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 65/218 (29%), Positives = 101/218 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA-ER--------KAILRAQFERMRKERA---- 178
S ++ D G SK +G + K+A E+ K + F + + ERA
Sbjct: 132 SCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIK-KSERATNDT 190
Query: 179 ---ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
LY KN D V E L+Q F+ G I+S+ I++ D
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVKMD 227
Score = 143 (55.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID++ L ++F FG I S+KV+ ++ +SKG+GFV +++ E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 511 HLKIINGKPLYVGLAEKREQRL 532
Score = 140 (54.3 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 150 VLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGT 202
+LYV Q +A R AIL+A+F+ + E LY KN++D +D+I L++ F GT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
I+S K+MR ++ SKG ++ E + M+ K
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Score = 114 (45.2 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
NLY+KNLDD + + +L E F FG ITS + +D SKGFG +V A ++ KA
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFG----FVCFASQEEANKA 506
Query: 165 I 165
+
Sbjct: 507 V 507
Score = 108 (43.1 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L Q+F+ +G+I S ++V + K++ + F+ Y+ ESA +A++ L
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMDNL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 64 (27.6 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 330 PRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE-RKDILGQRLYPLV 378
P N + N + +N L++ +A++P +K +LG+ L+PLV
Sbjct: 778 PNKNANKVNTMNNNMNVNFNNNSTLTAAALASAPPSMQKQVLGENLFPLV 827
Score = 49 (22.3 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNIN 185
K K LYV A+K+ +R + L+ +F RM R + +N
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHMNNPLN 553
Score = 45 (20.9 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 327 ISQPRAGQAAANNLTNGNHRAAASNENLSSM 357
+ Q Q NN+ N N+RA + NL +M
Sbjct: 683 LQQQGNNQLLNNNMRNMNNRANRNMGNLGNM 713
Score = 45 (20.9 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 316 SNLQKPSYNYPISQPRAGQAAANN-LTNGNHRAAASNENLSS 356
SN S N I+ A NN TN N+ + +S N S
Sbjct: 358 SNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGS 399
Score = 43 (20.2 bits), Expect = 3.2e-43, Sum P(3) = 3.2e-43
Identities = 19/96 (19%), Positives = 40/96 (41%)
Query: 297 QYRGAMMNGHANFPM--PLMLSNLQKPSYNYP---ISQPRAGQAA--ANNLTNGNHRAAA 349
++R + H N P+ P+ ++ Q P + +S R A NNL + H+ AA
Sbjct: 538 RFRMHPIRHHMNNPLNTPMQYASPQSPQLQFSQNTLSYGRPVITAFNQNNLISWRHQQAA 597
Query: 350 SNENLSSMLVATSPDERKDILGQRLYPLVKKLKVIT 385
+ + V +++ L + ++++ T
Sbjct: 598 QQQAVHQQAVHQQAAQQQLNFNTNLRGQINQMRLYT 633
Score = 40 (19.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 338 NNLTNGNHRAAASNENLSSML 358
NN T GN+ + +N N S +
Sbjct: 374 NNNTAGNNNSTNNNNNSGSSM 394
Score = 38 (18.4 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 90 FIRRADRIQEGSSFNNLYVKNLDDD-MTEEILVEKFSEFGKITSLVISK----DANGTSK 144
FI AD ++ +NL K + DD +E K E TS ++ DA+ T K
Sbjct: 235 FINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 287 (106.1 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 62/136 (45%), Positives = 86/136 (63%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV + T E+A AIEK+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSS---FNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + +++VG F R +R E G+ F N+Y+KN +++ +E L E FS+FGK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 132 SLVISKDANGTSKGFG 147
S+ + +D NG SKGFG
Sbjct: 121 SVKVMRDPNGKSKGFG 136
Score = 225 (84.3 bits), Expect = 9.0e-24, Sum P(3) = 9.0e-24
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 87 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 146
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 147 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 206
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 207 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 238
Score = 177 (67.4 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 191 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 248
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 249 TKAVTEMNGRIVGSKPLYVALAQRKEER 276
Score = 158 (60.7 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 151 EEMNG--KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 208
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 209 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 249
Score = 116 (45.9 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 70 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 125
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 126 RDPNGKSKG 134
Score = 77 (32.2 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 311 MPLMLSNLQKPSYNYPISQPRA-GQAAANNLTNGNHRAAASNENLS-SMLVATSPDERKD 368
+P + NL P + PRA + H A + L+ SML A P E+K
Sbjct: 417 VPTAVQNLA-PRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQPLTASMLAAAPPQEQKQ 475
Query: 369 ILGQRLYPLVKKL 381
+LG+RL+PL++ +
Sbjct: 476 MLGERLFPLIQTM 488
Score = 73 (30.8 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 261 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 293
Score = 49 (22.3 bits), Expect = 7.5e-34, Sum P(3) = 7.5e-34
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 262 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 313
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 309 (113.8 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 67/151 (44%), Positives = 94/151 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R E G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E L + FS+FGKI S+ + +D +G S+GFG
Sbjct: 204 ERCLQDLFSQFGKILSVKVMRDDSGHSRGFG 234
Score = 212 (79.7 bits), Expect = 3.9e-21, Sum P(3) = 3.9e-21
Identities = 58/153 (37%), Positives = 78/153 (50%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG I S KV+ G S+G+GFV + E A
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LYVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++F+ +G ITS + + G SKGFG
Sbjct: 305 IDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFG 336
Score = 160 (61.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ KL + F+ +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDSIDDEKLRKEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER---KAILTNQYIQRL 386
Score = 150 (57.9 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
D NG K ++LYV RAQK+ ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 DMNG--KEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+L++ F+ G I+S K+M T+ G SKG + E T
Sbjct: 308 EKLRKEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 134 (52.2 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRK-------SGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D +G S+GFG
Sbjct: 123 GNILSCKVVCDDHG-SRGFG 141
Score = 105 (42.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 44/153 (28%), Positives = 67/153 (43%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGS-KVLYVARAQ 157
G +LYV +L D+TE +L EKFS G I S+ + +D A S G+ A A+
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 158 KKAERK--AILRAQFER---------MRKERAE--LYKNINDEVDEIELKQYFSQCGTIS 204
+ + +++ Q R +RK KN+ D +D L FS G I
Sbjct: 67 RALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
S K++ D G S+G +T + +R M
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTM 158
Score = 102 (41.0 bits), Expect = 2.5e-14, Sum P(4) = 2.5e-14
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 136 SKDANGTSKGF--GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIE 192
+++A T G + ++V + + ER+A L A+ E +Y KN++ +VDE
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR----ALEFTNIYVKNLHVDVDERC 206
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKG 218
L+ FSQ G I SVK+MR D G S+G
Sbjct: 207 LQDLFSQFGKILSVKVMRDDSGHSRG 232
Score = 79 (32.9 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
G+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 359 GTKPLYVALAQRKEERKAILTNQYIQRLSTMRA 391
Score = 64 (27.6 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 352 ENLSSMLVATSP-DERKDILGQRLYPLV 378
E L++ ++A +P E+K ++G+RLYPL+
Sbjct: 527 EPLTASVLAAAPLHEQKQMIGERLYPLI 554
Score = 37 (18.1 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ 241
+A+AQ K ER + L Y ++
Sbjct: 365 VALAQRKEERKAILTNQYIQR 385
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 294 (108.6 bits), Expect = 2.4e-44, Sum P(3) = 2.4e-44
Identities = 61/152 (40%), Positives = 91/152 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ ++T
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 117 EEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
++ F ++G +TS +++D G S+GFG
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Score = 209 (78.6 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 54/163 (33%), Positives = 87/163 (53%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+GD+ SS + QE GKS+G+GFV +++ E A A+++
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L LYVG ++ +R +E S + NLY+KNLDD++ +E L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
+ FSEFG ITS + +D+ T G + ++K E K
Sbjct: 363 RQLFSEFGPITSAKVMRDSI-TEPGEEGESKEGEESEKNKENK 404
Score = 155 (59.6 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 40/146 (27%), Positives = 74/146 (50%)
Query: 4 TPNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
TP+S A + +V L ++ L ++FS+ G + S +V +S GY +V
Sbjct: 49 TPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y+T A+E+L ++ + + +R +++ N+++KNLD + + L
Sbjct: 109 YNTTADGEKALEELNYTLIKGRPCRI-MWSQRDPALRKTGQ-GNVFIKNLDVAIDNKALH 166
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
+ F+ FG I S +++D NG SKG+G
Sbjct: 167 DTFAAFGNILSCKVAQDENGNSKGYG 192
Score = 151 (58.2 bits), Expect = 2.4e-44, Sum P(3) = 2.4e-44
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K F + LYV RAQKK ER+ LR +E R+E+A Y KN++DEVD+ +L+Q
Sbjct: 306 KEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQL 365
Query: 197 FSQCGTISSVKIMR 210
FS+ G I+S K+MR
Sbjct: 366 FSEFGPITSAKVMR 379
Score = 104 (41.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLY--VARAQKKAE 161
+LYV LD +TE +L E FS+ G + S+ + +DA T + G + V Y A +K E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV-TRRSLGYAYVNYNTTADGEKALE 120
Query: 162 R------KA----ILRAQFE-RMRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K I+ +Q + +RK + ++ KN++ +D L F+ G I S K+
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 209 MRTDRGISKGH 219
+ + G SKG+
Sbjct: 181 AQDENGNSKGY 191
Score = 86 (35.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 37 KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR 96
K G+ SK S+ GKSKG+GFV ++ P+ A A+ ++ V LYV +R D
Sbjct: 418 KEGEDSKSK---SKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVA-LAQRKD- 472
Query: 97 IQEGSSFNNLYVKN 110
+++ ++ +N
Sbjct: 473 VRKNQLEQSIQARN 486
Score = 81 (33.6 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQ 195
K NG K +YV K +R++ +F+ M+ +Y KNIN EV + E +
Sbjct: 207 KHVNGML--LNEKKVYVGHHIPKKDRQS----KFDEMKANFTNIYVKNINPEVTDDEFRT 260
Query: 196 YFSQCGTISSVKIMRT-DRGISKG 218
F + G ++S + R + G S+G
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRG 284
Score = 79 (32.9 bits), Expect = 2.4e-44, Sum P(3) = 2.4e-44
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 299 RGAMMNGHANFPMPLMLSNLQKPSY--NYPISQPRAGQ-AAANNLTNG---NHRAAASNE 352
RG M G P+P M P + N P AG+ AAA G R A + E
Sbjct: 608 RGPMQGG---VPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPE 664
Query: 353 NLSSML--VATSPDERKDILGQRLYPLVKKL 381
L L VA +P ++K ILG+ ++P ++ +
Sbjct: 665 GLQGQLAAVADNPGQQKQILGEAIFPKIQAI 695
Score = 45 (20.9 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAE 179
+K LYVA AQ+K RK L + + R +
Sbjct: 460 NKPLYVALAQRKDVRKNQLEQSIQARNQLRMQ 491
Score = 37 (18.1 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 136 SKDANGTSKGFG 147
SK G SKGFG
Sbjct: 425 SKSKLGKSKGFG 436
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 292 (107.8 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L + FS+FGK+ S+ + +D +G S+ FG
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFG 234
Score = 196 (74.1 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 55/153 (35%), Positives = 76/153 (49%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ ++ L ++FS +G ITS + + G SKGFG
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336
Score = 160 (61.4 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ KL + FS +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER---KAILTNQYMQRL 386
Score = 145 (56.1 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
NG K ++LY RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +
Sbjct: 252 NG--KEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
L++ FS G I+S K+M T+ G SKG + E T
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 142 (55.0 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L+G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D +G S+GFG
Sbjct: 123 GNILSCKVACDEHG-SRGFG 141
Score = 89 (36.4 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 29/106 (27%), Positives = 52/106 (49%)
Query: 136 SKDANGTSKGF--GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIE 192
++ A T G + ++V + + ER+A L A+ E +Y KN+ +VDE
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR----ALEFTNIYVKNLPVDVDEQG 206
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238
L+ FSQ G + SVK+MR + G S+ C ++ + +++
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGHSR--CFGFVNFEKHEEAQKAVVH 250
Score = 75 (31.5 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKER 177
G+K LYVA AQ+K ERKAIL Q+ +R+ R
Sbjct: 359 GTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Score = 65 (27.9 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 355 SSMLVATSPDERKDILGQRLYPLV 378
+SML A E+K ++G+RLYPL+
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLI 556
Score = 37 (18.1 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ 241
+A+AQ K ER + L Y ++
Sbjct: 365 VALAQRKEERKAILTNQYMQR 385
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 319 (117.4 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 68/151 (45%), Positives = 91/151 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L E FS++GK S+ + D G SKGFG
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFG 234
Score = 225 (84.3 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 54/153 (35%), Positives = 86/153 (56%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVG----------PFIRRADRIQEG--SSFN--NLYVKNLDDD 114
A+E++ G + ++VG RR +++++ S + NLY+KNLDD
Sbjct: 245 NKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 158 (60.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY 181
EK + K + KD NG K+++V RAQKK ER+A L+ +FE++++ER Y
Sbjct: 239 EKHEDANKAVEEMNGKDING-------KMVFVGRAQKKVERQAELKRRFEQLKQERISRY 291
Query: 182 -------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
KN++D +D+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 129 (50.5 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 35/134 (26%), Positives = 67/134 (50%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G + S +V +S GY +V + P A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+ + ++ + + + +R +++ S N+++KNLD + + L + FS FG I S
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 133 LVISKDANGTSKGF 146
+ D NG SKG+
Sbjct: 128 CKVVCDENG-SKGY 140
Score = 103 (41.3 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN D++D+ LK+ FS+ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVM 223
Query: 210 RTDRGISKG 218
G SKG
Sbjct: 224 TDPTGKSKG 232
Score = 96 (38.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 42/145 (28%), Positives = 68/145 (46%)
Query: 100 GSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVAR 155
GSS+ +LYV +L D+TE +L EKFS G + S+ + +D S G+ A
Sbjct: 5 GSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 156 AQK----------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGT 202
A++ K + I+ +Q + +RK KN++ +D L FS G
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTK 227
I S K++ + G SKG+ +T+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 543 ASMLAAAPPQEQKQMLGERLFPLIQAM 569
Score = 73 (30.8 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRIAGMRA 391
Score = 45 (20.9 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGL 245
SK +A+AQ K ER ++L Y ++ G+
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRIAGM 389
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 326 (119.8 bits), Expect = 6.4e-38, Sum P(3) = 6.4e-38
Identities = 77/204 (37%), Positives = 115/204 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 14 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 73 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 132
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + M
Sbjct: 133 DENLRELFSQFGKTLSVKVMRDCSGKSKGFG----FVSYEKHEDANKAVEEMNGKEM-SG 187
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
++ +V+ + ELK+ F Q
Sbjct: 188 KSIFVGRAQKKVERQAELKRKFEQ 211
Score = 225 (84.3 bits), Expect = 5.1e-21, Sum P(3) = 5.1e-21
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 114 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 173
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 174 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 233
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 234 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 265
Score = 177 (67.4 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 218 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 275
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 276 TKAVTEMNGRIVGSKPLYVALAQRKEER 303
Score = 153 (58.9 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 178 EEMNG--KEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 235
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 236 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 276
Score = 111 (44.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+M
Sbjct: 97 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 152
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
R G SKG + + + M K+ G
Sbjct: 153 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 187
Score = 76 (31.8 bits), Expect = 6.4e-38, Sum P(3) = 6.4e-38
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 500 ASMLAAAPPQEQKQMLGERLFPLIQTM 526
Score = 49 (22.3 bits), Expect = 6.4e-38, Sum P(3) = 6.4e-38
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 289 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 340
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 326 (119.8 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 77/204 (37%), Positives = 115/204 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + M
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFG----FVSYEKHEDANKAVEEMNGKEM-SG 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
++ +V+ + ELK+ F Q
Sbjct: 259 KSIFVGRAQKKVERQAELKRKFEQ 282
Score = 225 (84.3 bits), Expect = 3.8e-21, Sum P(3) = 3.8e-21
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 153 (58.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 141 (54.7 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEK 157
Score = 111 (44.1 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
R G SKG + + + M K+ G
Sbjct: 224 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258
Score = 93 (37.8 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 79 (32.9 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 316 SNLQKPSYNYPISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRL 374
SN++ P +P QP +A Q A + G AS ML A P E+K +LG+RL
Sbjct: 514 SNVRSP---HPAIQPLQAPQPAVH--VQGQEPLTAS------MLAAAPPQEQKQMLGERL 562
Query: 375 YPLVKKL 381
+PL++ +
Sbjct: 563 FPLIQTM 569
Score = 49 (22.3 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 326 (119.8 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 77/204 (37%), Positives = 115/204 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + M
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFG----FVSYEKHEDANKAVEEMNGKEM-SG 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
++ +V+ + ELK+ F Q
Sbjct: 259 KSIFVGRAQKKVERQAELKRKFEQ 282
Score = 225 (84.3 bits), Expect = 4.9e-21, Sum P(3) = 4.9e-21
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 153 (58.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 141 (54.7 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEK 157
Score = 111 (44.1 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
R G SKG + + + M K+ G
Sbjct: 224 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 79 (32.9 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 316 SNLQKPSYNYPISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRL 374
SN++ P +P QP +A Q A + G AS ML A P E+K +LG+RL
Sbjct: 543 SNVRSP---HPAIQPLQAPQPAVH--VQGQEPLTAS------MLAAAPPQEQKQMLGERL 591
Query: 375 YPLVKKL 381
+PL++ +
Sbjct: 592 FPLIQTM 598
Score = 49 (22.3 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 303 (111.7 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 65/151 (43%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FGDI S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSS---FNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
++ L E FS FG S+ + D +G S+GFG
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFG 234
Score = 223 (83.6 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
Identities = 55/153 (35%), Positives = 83/153 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ ++ L ++FS +G ITS + + G SKGFG
Sbjct: 305 IDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFG 336
Score = 158 (60.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 39/102 (38%), Positives = 60/102 (58%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEER---KAILTNQYMQRL 386
Score = 154 (59.3 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 62/196 (31%), Positives = 98/196 (50%)
Query: 77 GATV-ERMELYVGPFIRRAD--RIQE-GSSFNN-LYVKNLDDDMTEEILVEKFSEFGKIT 131
GA V E +Y+ F D R++E S+F N L VK + D+ F +G
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFG-FVNYGNHE 242
Query: 132 SLVIS-KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KN 183
+ + NG K +++YV RAQK+ ER+ L+ +FE++++ER Y KN
Sbjct: 243 EAQKAVTEMNG--KEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGP 243
++D +D+ L++ FS GTI+S K+M T+ G SKG + E T + M +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR--- 356
Query: 244 GLASTIFPVHPTLYQR 259
+ ST P++ L QR
Sbjct: 357 -IVSTK-PLYVALAQR 370
Score = 133 (51.9 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 40/140 (28%), Positives = 68/140 (48%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + ++ +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNLDD + + L + FS F
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGLRK-------SGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D G S+G+G
Sbjct: 123 GDILSCKVVCDEYG-SRGYG 141
Score = 96 (38.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 40/148 (27%), Positives = 67/148 (45%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG----SKVLYVARAQKK 159
+LY+ +L D+TE +L EKFS G I S+ + +D A S G+ + RA
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 160 AERKAI----LRAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ I +R + + +RK KN++D +D L FS G I S K++
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIM 237
+ G S+G+ +T+ ++ M
Sbjct: 132 CDEYG-SRGYGFVHFETQEAANRAIQTM 158
Score = 73 (30.8 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 352 ENLSSMLVATSP-DERKDILGQRLYPLVKKL 381
E L++ L+A +P E+K ILG+R+YPL+ ++
Sbjct: 540 EPLTASLLAAAPLQEQKQILGERIYPLIHEM 570
Score = 73 (30.8 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 360 TKPLYVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 43 (20.2 bits), Expect = 4.4e-34, Sum P(3) = 4.4e-34
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 221 MAIAQTKRERTSYLRIMY--------AKQGPGLASTIFPVH---PTLYQRALQVYQAPD 268
+A+AQ K ER + L Y A GP L S P + PT+ Q + + + +P+
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPN 423
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 321 (118.1 bits), Expect = 5.0e-37, Sum P(3) = 5.0e-37
Identities = 76/204 (37%), Positives = 114/204 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + +
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFG----FVSYEKHEDANKAVEEMNGKEI-SG 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
+ +V+ + ELK+ F Q
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQ 282
Score = 226 (84.6 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 159 (61.0 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K KV++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 140 (54.3 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 157
Score = 115 (45.5 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 224 RDPSGKSKG 232
Score = 93 (37.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 5.0e-37, Sum P(3) = 5.0e-37
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 543 ASMLAAAPPQEQKQMLGERLFPLIQTM 569
Score = 73 (30.8 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 49 (22.3 bits), Expect = 5.0e-37, Sum P(3) = 5.0e-37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 292 (107.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L + FS+FGK+ S+ + +D +G S+ FG
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFG 234
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 49/138 (35%), Positives = 68/138 (49%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITS 132
+ ++ L ++FS +G ITS
Sbjct: 305 IDDDKLRKEFSPYGVITS 322
Score = 142 (55.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L+G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D +G S+GFG
Sbjct: 123 GNILSCKVACDEHG-SRGFG 141
Score = 122 (48.0 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
NG K ++LY RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +
Sbjct: 252 NG--KEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 193 LKQYFSQCGTISSVKIMR 210
L++ FS G I+S K R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 89 (36.4 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 29/106 (27%), Positives = 52/106 (49%)
Query: 136 SKDANGTSKGF--GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIE 192
++ A T G + ++V + + ER+A L A+ E +Y KN+ +VDE
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR----ALEFTNIYVKNLPVDVDEQG 206
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238
L+ FSQ G + SVK+MR + G S+ C ++ + +++
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGHSR--CFGFVNFEKHEEAQKAVVH 250
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 309 (113.8 bits), Expect = 6.1e-37, Sum P(3) = 6.1e-37
Identities = 71/169 (42%), Positives = 99/169 (58%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSS---FNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E G + F N+YVKN D
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYN 225
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+E L + F++FG ITS + G SKGFG +VA A + A+
Sbjct: 226 KETLEKLFAKFGNITSCEVMT-VEGKSKGFG----FVAFANPEEAETAV 269
Score = 220 (82.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 54/148 (36%), Positives = 86/148 (58%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+KFG+I S +V+ + EGKSKG+GFV ++ PE A A++ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 76 QGATVER--MELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+T+E ++L+V ++++R E + NLYVKNLD+ + ++
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG 147
L ++F +G ITS + D NG SKGFG
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFG 360
Score = 156 (60.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
+ G+ N +VKNL T+D+ L + F +G+I S+KV+ + G+SKG+GFV + PE A
Sbjct: 313 KYQGV-NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 371
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ V LYV R+ DR
Sbjct: 372 SAVTEMNSKMVCSKPLYVAIAQRKEDR 398
Score = 143 (55.4 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 39/108 (36%), Positives = 59/108 (54%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
+ T +G K L+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+
Sbjct: 274 DSTIEGTDLK-LHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
LK+ F G I+S K+M + G SKG + E TS + M +K
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 380
Score = 132 (51.5 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTP---ESAL 69
+ + +V +L ++ L + FS G + S +V + S GY +V + P E A+
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L G + M P +RR S N+++KNLD + + + + FS F
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRR-------SGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
G I S ++ D +G SKG+G A + A +K
Sbjct: 144 GNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 179
Score = 112 (44.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 42/139 (30%), Positives = 67/139 (48%)
Query: 98 QEGSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG----SKV 150
Q GSS+ +LYV +L D+ E IL EKFS G + S+ + +D A S G+ +
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 151 LYVARAQKKAERKAI----LRAQFER----MRKERA-ELY-KNINDEVDEIELKQYFSQC 200
RA +A+ +R + + MR+ A ++ KN++ +D + FS
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K+ + G SKG+
Sbjct: 144 GNILSCKVAIDEDGFSKGY 162
Score = 94 (38.1 bits), Expect = 6.1e-37, Sum P(3) = 6.1e-37
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 308 NFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSS-MLVATSPDER 366
N P P Q+P+ P + P+ QA G E L+S ML A +P E+
Sbjct: 526 NVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQR-PQGI--VIGGQEPLTSAMLAAAAPQEQ 582
Query: 367 KDILGQRLYPLVKKL 381
K +LG+R+Y L++KL
Sbjct: 583 KQLLGERIYALIEKL 597
Score = 76 (31.8 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 147 GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
G KV +V + Q +A+R + K+ +Y KN D ++ L++ F++ G I+S
Sbjct: 187 GKKV-FVGKFQPRAQRNR----ELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241
Query: 206 VKIMRTDRGISKGH-CMAIAQTKRERTS 232
++M T G SKG +A A + T+
Sbjct: 242 CEVM-TVEGKSKGFGFVAFANPEEAETA 268
Score = 64 (27.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 143 SKGFGSKVLYVARAQKKAERKAILRAQF-ERMRKER 177
SK SK LYVA AQ+K +R+A L +Q+ +R+ R
Sbjct: 379 SKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMR 414
Score = 44 (20.5 bits), Expect = 6.1e-37, Sum P(3) = 6.1e-37
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQ 241
S+V M + SK +AIAQ K +R + L Y ++
Sbjct: 372 SAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR 409
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 320 (117.7 bits), Expect = 6.5e-37, Sum P(3) = 6.5e-37
Identities = 76/204 (37%), Positives = 114/204 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + +
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFG----FVSYEKHEDANKAVEEMNGKEI-SG 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
+ +V+ + ELK+ F Q
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQ 282
Score = 226 (84.6 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Score = 177 (67.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 289 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 346
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 159 (61.0 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K KV++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 249 EEMNG--KEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 347
Score = 140 (54.3 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 42/159 (26%), Positives = 75/159 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P A A++ + ++ + + + +R +++ S N+++KNLD + + L + F
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTF 119
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
S FG I S + D NG SKG+ A KA K
Sbjct: 120 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 157
Score = 115 (45.5 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 223
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 224 RDPSGKSKG 232
Score = 93 (37.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 132 CDENG-SKGYAFVHFETQ 148
Score = 76 (31.8 bits), Expect = 6.5e-37, Sum P(3) = 6.5e-37
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 543 ASMLAAAPPQEQKQMLGERLFPLIQTM 569
Score = 73 (30.8 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 359 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 49 (22.3 bits), Expect = 6.5e-37, Sum P(3) = 6.5e-37
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 326 (119.8 bits), Expect = 7.6e-37, Sum P(3) = 7.6e-37
Identities = 78/204 (38%), Positives = 114/204 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F ++G S+ + D NG SKGFG +V+ + + +KA+ + M
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFG----FVSFERHEDAQKAVDEMNGKDMNG- 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
++ +V+ + ELK+ F Q
Sbjct: 259 KSMFVGRAQKKVERQTELKRKFEQ 282
Score = 212 (79.7 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 52/153 (33%), Positives = 80/153 (52%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +++ +L ++F K+G S KV+ GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++VG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++F FG ITS + + G SKGFG
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEG-GRSKGFG 336
Score = 157 (60.3 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + F FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 142 (55.0 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 43/129 (33%), Positives = 69/129 (53%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K ++V RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 EMNG--KDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ F GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 308 ERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 141 (54.7 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 50/163 (30%), Positives = 77/163 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
L + FS FG I S + D NG SKG+G V + Q+ AER
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGF-VHF--ETQEAAER 153
Score = 102 (41.0 bits), Expect = 9.0e-17, Sum P(4) = 9.0e-17
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN D++++ LK+ F + G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVM 223
Query: 210 RTDRGISKG 218
D G SKG
Sbjct: 224 TDDNGKSKG 232
Score = 92 (37.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 39/130 (30%), Positives = 62/130 (47%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G I S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K I+ +Q + +RK ++ KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 132 CDENG-SKGY 140
Score = 76 (31.8 bits), Expect = 7.6e-37, Sum P(3) = 7.6e-37
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAM 571
Score = 62 (26.9 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKER 177
+K LYVA AQ+K ER+A L Q+ +RM R
Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 42 (19.8 bits), Expect = 7.6e-37, Sum P(3) = 7.6e-37
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQ 258
+A+AQ K ER ++L Y ++ +AS P +P + YQ
Sbjct: 365 VALAQRKEERQAHLTNQYMQR---MASVRVP-NPVINPYQ 400
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 321 (118.1 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 76/204 (37%), Positives = 114/204 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 125 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 184 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E FS+FGK S+ + +D +G SKGFG +V+ + + KA+ + +
Sbjct: 244 DESLKELFSQFGKTLSVKVMRDPSGKSKGFG----FVSYEKHEDANKAVEEMNGKEI-SG 298
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
+ +V+ + ELK+ F Q
Sbjct: 299 KVIFVGRAQKKVERQAELKRKFEQ 322
Score = 226 (84.6 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 225 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 284
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 285 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 344
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + +G SKGFG
Sbjct: 345 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 376
Score = 177 (67.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 329 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 386
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 387 TKAVTEMNGRIVGSKPLYVALAQRKEER 414
Score = 159 (61.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K KV++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 289 EEMNG--KEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 346
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 347 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 387
Score = 115 (45.5 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 208 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 263
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 264 RDPSGKSKG 272
Score = 76 (31.8 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 612 ASMLAAAPPQEQKQMLGERLFPLIQTM 638
Score = 73 (30.8 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 399 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 431
Score = 49 (22.3 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 400 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 451
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 317 (116.6 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F ++G S+ + D +G SKGFG +V+ + + ++A+ + M +
Sbjct: 204 DEKLKEIFCKYGPALSIRVMTDDSGKSKGFG----FVSFERHEDAQRAVDEMNGKEMNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QVYVGRAQKKGERQTELKRKFEQ 282
Score = 230 (86.0 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ KL +IF K+G S +V+ GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 305 LDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Score = 161 (61.7 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +D+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 148 (57.2 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 EMNG--KEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 308 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 140 (54.3 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEK 157
Score = 96 (38.9 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A + A+ KE +Y KN +++D+ +LK+ F + G S+++M
Sbjct: 168 VFVGRFKSRKEREAEMGAR----AKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVM 223
Query: 210 RTDRGISKG 218
D G SKG
Sbjct: 224 TDDSGKSKG 232
Score = 91 (37.1 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 39/131 (29%), Positives = 63/131 (48%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYV---ARAQK--- 158
+LYV +L D+TE +L EKFS G I S+ + +D T + G + A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMM-TRRSLGYAYVNFQQPADAERALD 70
Query: 159 -------KAERKAILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K I+ +Q + +RK ++ KN++ +D L FS G I S K+
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 209 MRTDRGISKGH 219
+ + G SKG+
Sbjct: 131 VCDENG-SKGY 140
Score = 77 (32.2 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 546 ASMLAAAPPQEQKQMLGERLFPLIQNM 572
Score = 69 (29.3 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L +Q+ +RM RA
Sbjct: 360 TKPLYVALAQRKEERQAHLTSQYMQRMASVRA 391
Score = 45 (20.9 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV-HPTLYQRA 260
+A+AQ K ER ++L Y ++ + + PV +P YQ A
Sbjct: 365 VALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNP--YQPA 403
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 298 (110.0 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSS---FNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
++ L E FS FG S+ + D +G S+GFG
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFG 234
Score = 222 (83.2 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 54/153 (35%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ ++ L ++F +G ITS + + G SKGFG
Sbjct: 305 IDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFG 336
Score = 157 (60.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 63/197 (31%), Positives = 100/197 (50%)
Query: 77 GATV-ERMELYVGPFIRRAD--RIQE-GSSFNN-LYVKNLDDDMTEEILVEKFSEFG--K 129
GA V E +Y+ F D R++E S+F N L VK + DD F +G +
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFG-FVNYGNHE 242
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------K 182
+S + NG K +++YV RAQK+ ER++ L+ +FE++++ER Y K
Sbjct: 243 EAQKAVS-EMNG--KEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVK 299
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQG 242
N++D +D+ L++ F GTI+S K+M T+ G SKG + E T + M +
Sbjct: 300 NLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR-- 356
Query: 243 PGLASTIFPVHPTLYQR 259
+ ST P++ L QR
Sbjct: 357 --IVSTK-PLYVALAQR 370
Score = 152 (58.6 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 38/102 (37%), Positives = 59/102 (57%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + F +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEER---KAILTNQYMQRL 386
Score = 73 (30.8 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 360 TKPLYVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 68 (29.0 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+S+L P E+K +LG+R+YP++ ++
Sbjct: 544 ASLLAGAPPQEQKQMLGERIYPVIHEM 570
Score = 37 (18.1 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ 241
+A+AQ K ER + L Y ++
Sbjct: 365 VALAQRKEERKAILTNQYMQR 385
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 320 (117.7 bits), Expect = 5.6e-36, Sum P(3) = 5.6e-36
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 233 (87.1 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Score = 163 (62.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 151 (58.2 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 308 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 141 (54.7 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
Score = 96 (38.9 bits), Expect = 5.1e-16, Sum P(4) = 5.1e-16
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +++D+ LK F + G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 223
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 224 TDESGKSKG 232
Score = 92 (37.4 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 39/130 (30%), Positives = 63/130 (48%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G I S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK ++ KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 132 CDENG-SKGY 140
Score = 73 (30.8 bits), Expect = 5.6e-36, Sum P(3) = 5.6e-36
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML + P E+K +LG+RL+PL++ +
Sbjct: 558 ASMLASAPPQEQKQMLGERLFPLIQAM 584
Score = 66 (28.3 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L Q+ +RM RA
Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 44 (20.5 bits), Expect = 5.6e-36, Sum P(3) = 5.6e-36
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV-HPTLYQRA 260
+A+AQ K ER ++L Y ++ + + PV +P YQ A
Sbjct: 365 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 278 (102.9 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 62/147 (42%), Positives = 83/147 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R+SG GN FVKNL +IDN +L +FS FG + S KV G SKGYGFV
Sbjct: 17 MFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFV 76
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ + S A G + ++V PF+ R + + F N+YVKNL + T+ L
Sbjct: 77 QFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRG-QWDKSRVFTNVYVKNLVETATDADL 135
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG 147
F EFG+ITS V+ KD G S+ FG
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFG 162
Score = 254 (94.5 bits), Expect = 7.0e-20, P = 7.0e-20
Identities = 64/167 (38%), Positives = 93/167 (55%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL T + L ++F +FG+I S+ V+ EGKS+ +GFV + E+A+ AIEK+
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN--------------NLYVKNLDDDMTEEIL 120
G V+ EL+VG R+ +R ++ + F NLYVKNLDD + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
E FSEFG ITS + +NG SKG G +V + + KA+L+
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVG----FVEFSTSEEASKAMLK 282
Score = 176 (67.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL ++DN KL ++FS+FG I S KV+V G SKG GFV++ST E A A+ K+
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 76 QGATVERMELYVG-PFIRRADRIQEGSSFNN 105
G V +YV + ++ + FNN
Sbjct: 284 NGKMVGNKPIYVSLAQCKEQHKLHLQTQFNN 314
Score = 141 (54.7 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 46/126 (36%), Positives = 63/126 (50%)
Query: 124 FSEFGKITSLVIS-KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE-----RMRKER 177
F F K + V + + NG K L+V RAQ+K R L+A+FE R K R
Sbjct: 163 FVNFEKAEAAVTAIEKMNGVV--VDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTR 220
Query: 178 A--ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYL 234
LY KN++D VD +L++ FS+ GTI+S K+M GISKG T E + +
Sbjct: 221 KGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAM 280
Query: 235 RIMYAK 240
M K
Sbjct: 281 LKMNGK 286
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 40/132 (30%), Positives = 68/132 (51%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----SKV-LYVA 154
S N++VKNLD+ + + L + FS FGK+ S +++DA+G SKG+G S + +Y A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 155 ---------RAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISS 205
R Q + R Q+++ R KN+ + + +LK+ F + G I+S
Sbjct: 88 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147
Query: 206 VKIMRTDRGISK 217
+M+ G S+
Sbjct: 148 AVVMKDGEGKSR 159
Score = 54 (24.1 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 41/192 (21%), Positives = 70/192 (36%)
Query: 142 TSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRKERAELYKN-INDEVDEIELKQYFS 198
T KG LYV + + L ++F + + ++ N I+ V +E FS
Sbjct: 219 TRKGMN---LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVE----FS 271
Query: 199 QCGTISSVKIMRTDRGI-SKGHCMAIAQTKRERTSYLRIMYAK------QGPGLASTIFP 251
S + + + +K +++AQ K + +L+ + Q P + + P
Sbjct: 272 TSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAP 331
Query: 252 VHPTLYQRALQVYQ-APDFRHGGMIPNGXXXXXXXXXXXMAPDSVTQYRGAMMNG-HANF 309
Q L+ Y P G +PN P T Y A + G + +
Sbjct: 332 ATMLSQQTPLRGYNFQPYSMCGSRMPNSCPPISIPNFMVPQPFRPTLYPPAPLVGLYGSL 391
Query: 310 PMPLMLSNLQKP 321
P PL+ NL P
Sbjct: 392 PQPLLQPNLWNP 403
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 309 (113.8 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 75/204 (36%), Positives = 114/204 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F ++G S+ + D +G S+GFG +V+ + + +KA+ + +
Sbjct: 204 DERLKEWFGQYGAALSVKVMTDDHGKSRGFG----FVSFERHEDAQKAVDDMNGKDLNG- 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
+A +V+ + ELK+ F Q
Sbjct: 259 KAIFVGRAQKKVERQTELKRKFEQ 282
Score = 206 (77.6 bits), Expect = 8.8e-20, Sum P(3) = 8.8e-20
Identities = 51/153 (33%), Positives = 79/153 (51%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L + F ++G S KV+ GKS+G+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++ + G + ++VG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++F+ FG ITS + + G SKGFG
Sbjct: 305 IDDERLRKEFTPFGSITSAKVMMEG-GRSKGFG 336
Score = 161 (61.7 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + F+ FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 147 (56.8 bits), Expect = 9.0e-21, Sum P(3) = 9.0e-21
Identities = 43/129 (33%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
D NG K K ++V RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 DMNG--KDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ F+ G+I+S K+M + G SKG + E T + M + + +T
Sbjct: 308 ERLRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 140 (54.3 bits), Expect = 9.0e-21, Sum P(3) = 9.0e-21
Identities = 50/163 (30%), Positives = 77/163 (47%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
L + FS FG I S + D NG SKG+G V + Q+ AER
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGF-VHF--ETQEAAER 153
Score = 108 (43.1 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +++D+ LK++F Q G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVM 223
Query: 210 RTDRGISKG 218
D G S+G
Sbjct: 224 TDDHGKSRG 232
Score = 92 (37.4 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 39/130 (30%), Positives = 63/130 (48%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G I S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK ++ KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 132 CDENG-SKGY 140
Score = 76 (31.8 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAM 571
Score = 62 (26.9 bits), Expect = 8.8e-20, Sum P(3) = 8.8e-20
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKER 177
+K LYVA AQ+K ER+A L Q+ +RM R
Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 43 (20.2 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 33/130 (25%), Positives = 52/130 (40%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG-GMIP--- 276
+A+AQ K ER ++L Y ++ +AS P +P + YQ P + IP
Sbjct: 365 VALAQRKEERQAHLTNQYMQR---MASVRVP-NPVI-----NPYQPPPSSYFMAAIPPAQ 415
Query: 277 NGXXXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNY--PISQ-PR-- 331
N + P +GA + N + S + P+++ P SQ PR
Sbjct: 416 NRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMAGAIRPSAPRPPTFSTMRPTSQVPRVM 475
Query: 332 AGQAAANNLT 341
+ Q AN T
Sbjct: 476 SAQRVANTST 485
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 320 (117.7 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 233 (87.1 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Score = 148 (57.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 250 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKG 218
L++ FS GTI+S K+M + G SKG
Sbjct: 308 ERLRKEFSPFGTITSAKVMM-EGGRSKG 334
Score = 141 (54.7 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
Score = 115 (45.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYS 63
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S
Sbjct: 290 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFS 341
Score = 96 (38.9 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +++D+ LK F + G SVK+M
Sbjct: 168 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 223
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 224 TDESGKSKG 232
Score = 92 (37.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 39/130 (30%), Positives = 63/130 (48%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G I S+ + +D S G+ A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 159 ------KAERKAILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK ++ KN++ +D L FS G I S K++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 132 CDENG-SKGY 140
Score = 73 (30.8 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML + P E+K +LG+RL+PL++ +
Sbjct: 507 ASMLASAPPQEQKQMLGERLFPLIQAM 533
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 318 (117.0 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 79/205 (38%), Positives = 115/205 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S KVV + G SKG+GFV
Sbjct: 85 MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E G+ F N+Y+KN D M
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
++ L F FG++ S+ + D G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DKTLNGLFGRFGQVLSVKVMTDEGGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKN-INDEVDE-IELKQYFSQ 199
+Y +VD IELK+ F Q
Sbjct: 260 H--IYVGPAQKKVDRHIELKRKFEQ 282
Score = 241 (89.9 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ L+ +F +FG + S KV+ + GKSKG+GFV + E A A++++
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + +YVGP ++ DR I+ F NLYVKNLDD + +E L
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
++FS FG ITS + + G SKGFG
Sbjct: 312 KEFSPFGTITSTKVMTEG-GRSKGFG 336
Score = 168 (64.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 42/108 (38%), Positives = 64/108 (59%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYS 63
T + R GI N +VKNL ID+ +L + FS FG I S+KV+ ++ G+SKG+GFV +S
Sbjct: 284 TQDRGIRYQGI-NLYVKNLDDGIDDERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFS 341
Query: 64 TPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
+PE A A+ ++ G V LYV R+ +R Q + N Y++ +
Sbjct: 342 SPEEATKAVSEMNGRIVATKPLYVALAQRKEER-Q--AHLTNQYIQRM 386
Score = 135 (52.6 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 43/129 (33%), Positives = 68/129 (52%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERA------ELY-KNINDEVDE 190
+ NG K K +YV AQKK +R L+ +FE++ ++R LY KN++D +D+
Sbjct: 250 EMNG--KELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M T+ G SKG + E T + M + + +T
Sbjct: 308 ERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGR----IVATK- 361
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 362 PLYVALAQR 370
Score = 131 (51.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 57/186 (30%), Positives = 88/186 (47%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L + L++ FS G I S +V V+++ +S GY V + P E
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITR--RSLGYASVNFEQPADAER 67
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++G V M P +RR S N+++KNL+ + + L + FS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRR-------SGVGNVFIKNLNKTIDNKALYDTFS 120
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRK 175
FG I S + D NG SKG G A ++A +RK + QF + RK
Sbjct: 121 AFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV-GQF-KSRK 177
Query: 176 ER-AEL 180
ER AEL
Sbjct: 178 EREAEL 183
Score = 106 (42.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 42/135 (31%), Positives = 63/135 (46%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQ 157
G +LYV +L D+TE +L EKFS G I S+ + +D S G+ S A A+
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAE 66
Query: 158 K----------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTIS 204
+ K + I+ +Q + +R+ KN+N +D L FS G I
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 205 SVKIMRTDRGISKGH 219
S K++ + G SKGH
Sbjct: 127 SCKVVCDENG-SKGH 140
Score = 73 (30.8 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 321 PSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
P Y Y + Q L E ++ + T+P E+K +LG+RL+PL++
Sbjct: 507 PQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPWTASTLGTAPQEQKQMLGERLFPLIQA 566
Query: 381 L 381
+
Sbjct: 567 M 567
Score = 63 (27.2 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L Q+ +RM R+
Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYIQRMASVRS 391
Score = 46 (21.3 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 32/148 (21%), Positives = 54/148 (36%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ-APDFRHGGMIPNGX 279
+A+AQ K ER ++L Y ++ + S P + YQ AP +P
Sbjct: 365 VALAQRKEERQAHLTNQYIQRMASVRSG--P------NSLINAYQPAPSGYSVAAVPQTQ 416
Query: 280 XXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQA---- 335
+ P T++ H FP S+ P ++ +P +
Sbjct: 417 NCAPCCPSQIVQPSPSTRWTAQGARPHP-FPNVSGASHPAAPKSSFTTVRPSSSHVPQVM 475
Query: 336 AANNLTNGNHRAAASNENLSSMLVATSP 363
AA +TN + + L+S AT+P
Sbjct: 476 AAQRITNTSAQTTGQRPALASS-PATTP 502
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 367 KDILGQRLYPLVKKLKVITHIFVKGQF 393
K++ G+ +Y + KV HI +K +F
Sbjct: 254 KELNGKHIYVGPAQKKVDRHIELKRKF 280
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 302 (111.4 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 75/204 (36%), Positives = 115/204 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
E+ L + FS FGK+ S+ + +D +G S+GFG +V + + +KA++ + +
Sbjct: 204 EQGLQDLFSRFGKMLSVKVMRDDSGHSRGFG----FVNFQKHEEAQKAVMDMNGKEV-SG 258
Query: 177 RAELYKNINDEVD-EIELKQYFSQ 199
R V+ + ELK+ F Q
Sbjct: 259 RLLYVGRAQKRVERQSELKRRFEQ 282
Score = 213 (80.0 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 58/153 (37%), Positives = 78/153 (50%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+G+GFV + E A
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LYVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS +G ITS + + G SKGFG
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336
Score = 158 (60.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ KL + FS +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G + LYV R+ +R + N Y++ L
Sbjct: 348 KAVTEMNGRILGTKPLYVALAQRKEER---KAILTNQYMQRL 386
Score = 154 (59.3 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
D NG K ++LYV RAQK+ ER++ L+ +FE+++++R LY KN++D +D+
Sbjct: 250 DMNG--KEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+L++ FS G I+S K+M T+ G SKG + E T
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 135 (52.6 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D +G S+GFG
Sbjct: 123 GNILSCKVVCDDHG-SRGFG 141
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGS-KVLYVARAQ 157
G +LYV +L D+TE +L EKFS G I S+ + +D A S G+ A A+
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 158 KKAERK--AILRAQFER---------MRKERA-ELY-KNINDEVDEIELKQYFSQCGTIS 204
+ + +++ Q R +RK ++ KN+ D +D L FS G I
Sbjct: 67 RALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 205 SVKIMRTDRGISKG 218
S K++ D G S+G
Sbjct: 127 SCKVVCDDHG-SRG 139
Score = 97 (39.2 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V + + ER+ L A+ E +Y KN++ +VDE L+ FS+ G + SVK+M
Sbjct: 168 VFVGHFKSRREREVELGAR----AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVM 223
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
R D G S+G Q E + M K+ G
Sbjct: 224 RDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSG 258
Score = 79 (32.9 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
G+K LYVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 359 GTKPLYVALAQRKEERKAILTNQYMQRLSTVRA 391
Score = 70 (29.7 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPSYNY-PISQPRAGQAAANNLTNGNHRAAA-SNENLS 355
Y GA A P LS P+Y P PR + A ++ E L+
Sbjct: 514 YPGATPG--APHPKSGSLSGPNSPAYLLQPTLVPRPQEPAGPHVQVQEPAVRILGQEPLT 571
Query: 356 SMLVATSP-DERKDILGQRLYPLV 378
+ ++A +P E+K ++G+RLYPL+
Sbjct: 572 ASMLAAAPLHEQKQMIGERLYPLI 595
Score = 37 (18.1 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 221 MAIAQTKRERTSYLRIMYAKQ 241
+A+AQ K ER + L Y ++
Sbjct: 365 VALAQRKEERKAILTNQYMQR 385
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 311 (114.5 bits), Expect = 6.6e-33, Sum P(2) = 6.6e-33
Identities = 73/203 (35%), Positives = 109/203 (53%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 86 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 145 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
++ L E F ++GK S+ + D G S+GFG +V+ + + KA+ + +
Sbjct: 205 DQRLKELFDKYGKTLSVKVMTDPTGKSRGFG----FVSYEKHEDANKAVEEMNGTELNGK 260
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + ELK+ F Q
Sbjct: 261 TVFVGRAQKKMERQAELKRKFEQ 283
Score = 220 (82.5 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 53/153 (34%), Positives = 81/153 (52%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ +L ++F K+G S KV+ GKS+G+GFV Y E A
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDA 245
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+E++ G + ++VG ++ +R E F NLY+KNLDD
Sbjct: 246 NKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 305
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 306 IDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 337
Score = 182 (69.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ +EG+SKG+GFV +S+PE A
Sbjct: 290 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EEGRSKGFGFVCFSSPEEA 347
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDD--DMTEEILVEKFSE 126
A+ ++ G V LYV R+ +R + N Y++ + M ++ +F
Sbjct: 348 TKAVTEMNGRIVGSKPLYVALAQRKEER---KAHLTNQYMQRIAGMRAMPANAIINQFQP 404
Query: 127 FGKITSLVISKDANGTS 143
G + + N T+
Sbjct: 405 AGGYFMPAVPQAQNRTT 421
Score = 153 (58.9 bits), Expect = 7.7e-21, Sum P(3) = 7.7e-21
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NGT K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 250 EEMNGTE--LNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 307
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M + G SKG + E T
Sbjct: 308 DEKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEAT 348
Score = 131 (51.2 bits), Expect = 7.7e-21, Sum P(3) = 7.7e-21
Identities = 37/134 (27%), Positives = 67/134 (50%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L I L++ FS G + S +V +S GY +V + P A A+
Sbjct: 11 MASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 70
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+ + V+ + + + +R +++ S N+++KNLD + + L + FS FG I S
Sbjct: 71 DTMNFDVVKGKPIRI-MWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 133 LVISKDANGTSKGF 146
+ D NG SKG+
Sbjct: 129 CKVVCDENG-SKGY 141
Score = 94 (38.1 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A + A+ KE +Y KN D++D+ LK+ F + G SVK+M
Sbjct: 169 VFVGRFKSRKEREAEMGAK----AKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVM 224
Query: 210 RTDRGISKG 218
G S+G
Sbjct: 225 TDPTGKSRG 233
Score = 92 (37.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQK---- 158
+LYV +L D+TE +L EKFS G + S+ + +D S G+ A A++
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K + I+ +Q + +RK KN++ +D L FS G I S K++
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 132
Query: 210 RTDRGISKGHCMAIAQTK 227
+ G SKG+ +T+
Sbjct: 133 CDENG-SKGYAFVHFETQ 149
Score = 79 (32.9 bits), Expect = 6.6e-33, Sum P(2) = 6.6e-33
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 310 PMPLMLSNLQK--PSYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSP 363
P P M + P Y Y + QP+ Q A +SML A P
Sbjct: 495 PRPAMGMTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQPAVHVQGQEPLTASMLAAAPP 554
Query: 364 DERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 555 QEQKQMLGERLFPLIQAM 572
Score = 73 (30.8 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 360 GSKPLYVALAQRKEERKAHLTNQYMQRIAGMRA 392
Score = 49 (22.3 bits), Expect = 9.2e-30, Sum P(2) = 9.2e-30
Identities = 32/141 (22%), Positives = 51/141 (36%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ-RALQVYQAPDFRHGGM 274
SK +A+AQ K ER ++L Y ++ G+ + P + + Q + Y P
Sbjct: 361 SKPLYVALAQRKEERKAHLTNQYMQRIAGMRA--MPANAIINQFQPAGGYFMPAVPQA-- 416
Query: 275 IPNGXXXXXXXXXXXMAPDSVTQYRGAMMNGHANFP-MPLMLSNLQKPSYNYPISQ--PR 331
N M P+ Q +G G F MP S+L++P I P
Sbjct: 417 -QNRTTYYAPNQLTQMRPNPRWQQQGG--RGQGGFQGMP---SSLRQPGPRANIRHLAPN 470
Query: 332 AGQAAANNLTNGNHRAAASNE 352
A + G R + +
Sbjct: 471 ASNQGPRGMPTGAQRVGGTGQ 491
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 323 (118.8 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 74/203 (36%), Positives = 112/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG I S KV V + G +KGYGFV
Sbjct: 154 MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFV 213
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + ESA AIE + G + ++YVG + R +R + ++F N+Y+KNLD ++T
Sbjct: 214 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
E+ + F +FG+ITSL + KD N +GFG +V A + +KA+ + + +
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFG----FVNYANHECAQKAVDELNDKEYKGK 329
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + E EL++ + Q
Sbjct: 330 KLYVGRAQKKHEREEELRKRYEQ 352
Score = 217 (81.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 54/154 (35%), Positives = 81/154 (52%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
EA + N ++KNL + I + +F +FG+I S +V Q K +G+GFV Y+ E
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 313
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEG---------SSFN-----NLYVKNLDD 113
A A+++L + +LYVG ++ +R +E N NL++KNL D
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQD 373
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
++ +E L +FS FG ITS I D G SKGFG
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFG 407
Score = 165 (63.1 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 48/123 (39%), Positives = 64/123 (52%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K + K LYV RAQKK ER+ LR ++E+M+ E+ Y KN+ DEVD+ LK
Sbjct: 324 KEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAE 383
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL 256
FS GTI+S KIM ++G SKG T E + M + LA P++ L
Sbjct: 384 FSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRM---LAGK--PLYVAL 438
Query: 257 YQR 259
QR
Sbjct: 439 AQR 441
Score = 160 (61.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
+ G+ N F+KNL +D+ +L FS FG I S+K++ ++GKSKG+GFV Y+TPE A
Sbjct: 360 KYQGV-NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEAN 418
Query: 70 DAIEKLQGATVERMELYV 87
A+ ++ + LYV
Sbjct: 419 KAVTEMNQRMLAGKPLYV 436
Score = 137 (53.3 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 37/146 (25%), Positives = 73/146 (50%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+TP+ A S + +V L ++ L ++F+ G + S +V +S GY +V
Sbjct: 70 ATPSGTAPTSA--SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ E A+++L ++ + + +R +++ + N+++KNLD + + L
Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRI-MWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALH 185
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
+ FS FGKI S ++ D G +KG+G
Sbjct: 186 DTFSAFGKILSCKVAVDELGNAKGYG 211
Score = 69 (29.3 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
K +YV + ER++ + E ++ +Y KN++ E+ E E F Q G I+S+
Sbjct: 236 KKVYVGHHVSRRERQS----KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS 291
Query: 208 IMRTDRGISKG 218
+++ +G
Sbjct: 292 LVKDQNDKPRG 302
Score = 58 (25.5 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 326 PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE-RKDILGQRLYPLV 378
P S P AG A A + E ++ +A P+E RK +LG+ LYP V
Sbjct: 548 PGSVPSAGPAEAEAVP----AVPGMPERFTAADLAAVPEESRKQVLGELLYPKV 597
Score = 55 (24.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAE 179
K LYVA AQ+K R++ L AQ + + R +
Sbjct: 432 KPLYVALAQRKEVRRSQLEAQIQARNQFRLQ 462
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 322 (118.4 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 66/151 (43%), Positives = 92/151 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E E F++FG I S + KDA+G KGFG
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFG 262
Score = 227 (85.0 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 53/146 (36%), Positives = 84/146 (57%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+F+ +G ITS + + NG SKGFG
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFG 365
Score = 175 (66.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 50/145 (34%), Positives = 76/145 (52%)
Query: 95 DRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYV 153
++ QE + F + +L+ D ++ F + K V + +A S+ G K LYV
Sbjct: 233 EQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK-LYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRAD 95
AI + V LYV +R D
Sbjct: 376 TKAITEKNQQIVAGKPLYVA-IAQRKD 401
Score = 165 (63.1 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 51/164 (31%), Positives = 83/164 (50%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
++ E+ AIE+L ++ + + +R +++ S N+++KNL D+ + L
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRI-MWSQRDPSLRKKGS-GNIFIKNLHPDIDNKALY 143
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+ FS FG I S I+ D NG SKGFG +V ++ A ++AI
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFG----FVHFEEEGAAKEAI 183
Score = 71 (30.1 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+YVA + ER + Q E + LY KNIN E + + ++ F++ G I S +
Sbjct: 196 IYVAPHLSRKERDS----QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLE 251
Query: 210 RTDRGISKG 218
+ G KG
Sbjct: 252 KDADGKLKG 260
Score = 48 (22.0 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 149 KVLYVARAQKKAERKAILRAQFE---RMRKERA 178
K LYVA AQ+K R++ L Q + +MR ++A
Sbjct: 390 KPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQA 422
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 322 (118.4 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 74/201 (36%), Positives = 117/201 (58%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR +E ++F N+Y+KN+D ++
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E + F +FG+ITS +S+D+ G S+GFG +V + ++ + A+ + +R +
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFG----FVNFSTHESAQAAVEEMNDKEVRSQ 291
Query: 177 RAELYKNINDEVDEIEL-KQY 196
+ + + E EL KQY
Sbjct: 292 KLYVGRAQKKHEREEELRKQY 312
Score = 217 (81.4 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 50/137 (36%), Positives = 81/137 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ + ++F KFG+I S+ + EGKS+G+GFV +ST ESA A+E++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 76 QGATVERMELYVGPF---------IRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V +LYVG +R+ A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 122 EKFSEFGKITSLVISKD 138
E F +G ITS + +D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 144 (55.7 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQC 200
S+ LYV RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F
Sbjct: 290 SQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPY 349
Query: 201 GTISSVKIMR 210
GTI+S K+MR
Sbjct: 350 GTITSAKVMR 359
Score = 135 (52.6 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 36/144 (25%), Positives = 69/144 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ L+++FS G + S +V +S GY +V Y+ A+++L
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELN 104
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + + +R +++ N+++KNLD + + L + F+ FG I S ++
Sbjct: 105 YTLIKGKPCRI-MWSQRDPALRKTGQ-GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 137 KDANGTSKGFGSKVLYVARAQKKA 160
+D G SKG+G A A A
Sbjct: 163 QDEFGVSKGYGFVHYETAEAANNA 186
Score = 52 (23.4 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 358 LVATSPDERKDILGQRLYPLVK 379
L A P ++K +LG+ LYP ++
Sbjct: 638 LSAAPPQQQKQMLGEALYPKIQ 659
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 308 (113.5 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
Identities = 67/159 (42%), Positives = 90/159 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ID+ L+ FS FG+I S KVV SKG+GFV
Sbjct: 84 MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Y T ESA AI K+ G + +++VGPF +R Q F N++ KNL +D+ +
Sbjct: 144 HYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQ 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
L E ++G+IT++ I D G SKGFG A A K
Sbjct: 204 LKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAK 242
Score = 223 (83.6 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
Identities = 51/147 (34%), Positives = 81/147 (55%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F KNL+ + +L ++ ++G+I + ++ +GKSKG+GF + + E+A + +E
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN------NLYVKNLDDDMTEEILVEKFSEFG 128
G +Y G ++ +R E +F NLY+KN+DD + + L E FS+FG
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 129 KITSLVISKDANGT-SKGFGSKVLYVA 154
ITS ++ KD T SKGFG V Y A
Sbjct: 309 TITSAIVMKDDKATTSKGFGF-VCYTA 334
Score = 152 (58.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPE 66
E + G+ N ++KN+ +IDN KL ++FS+FG I S+ V+ + SKG+GFV Y+ P+
Sbjct: 278 ETKYQGV-NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRAD 95
A A+ ++ G + LYV +R D
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVA-LAQRKD 364
Score = 152 (58.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 87 VGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF 146
VGP + + +Q+ N+ + D ++ F E + V+ + NG K F
Sbjct: 199 VGPD-QLKELLQQYGEITNITIMADDKGKSKGFGFANF-ESAEAAKNVVENE-NG--KIF 253
Query: 147 GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
K +Y RAQKK ER+A L+ FE + + LY KNI+D +D +L++ FSQ GTI+S
Sbjct: 254 HGKPIYAGRAQKKIEREAELKHTFET-KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITS 312
Query: 206 VKIMRTDRGI-SKG 218
+M+ D+ SKG
Sbjct: 313 AIVMKDDKATTSKG 326
Score = 60 (26.2 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 346 RAAASNE---NLSSMLVATSPDERKDILGQRLYPLV 378
+AA+S E NL S++ S D++ LG+ LYPL+
Sbjct: 482 QAASSAESALNLQSIINLPSRDQQNVALGEHLYPLI 517
Score = 39 (18.8 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 339 NLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPL-VKKLKVIT 385
NL + + + A E+L ++ + PD I G L L V++L +T
Sbjct: 498 NLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLT 545
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 336 (123.3 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 66/148 (44%), Positives = 97/148 (65%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
+S+ +S AR SG+GN FVKNL ++DN LH+ FS G I S KV G+S+GYGFVQ
Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEI 119
+ T +SA +AIEKL G + +++VGPF+R+ +R + F N+YVKNL + T++
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG 147
L F ++G I+S V+ +D +G S+ FG
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFG 268
Score = 279 (103.3 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 118/395 (29%), Positives = 176/395 (44%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + +L F ++G I S+ V+ +GKS+ +GFV + PE A A+E L
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 76 QGATVERMELYVGPFIRRADR-------IQEGSS-----FN--NLYVKNLDDDMTEEILV 121
G + E YVG ++++R ++GSS F+ NLYVKNLDD +T+E L
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVA-RAQKKAERKAILRAQFERMRKERAEL 180
E F+EFG ITS + +D +GTSKG G +VA A +A R +L +M + L
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSG----FVAFSAASEASR--VLNEMNGKMVGGKP-L 398
Query: 181 YKNINDEVDE--IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238
Y + +E +L+ FSQ + + + I G + Q +I Y
Sbjct: 399 YVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQ---------QIFY 448
Query: 239 AKQGPGLASTIFPVHPTL-YQRALQVYQAPDFRHGGMIPNGXXXXXXXXXXXMAPDSVTQ 297
QGP I P P YQ L P F G M+ G P
Sbjct: 449 G-QGP---PPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPR--------PGGRRS 496
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPS--YNYPISQ------PRAGQAA--ANNLTNGNHRA 347
G M + H PMP M + Y YP P G A ++ +
Sbjct: 497 GDGPMRHQHQQ-PMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQ 555
Query: 348 AASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
S L++ L +P +++ +LG+ LYPLV +++
Sbjct: 556 PMSAGQLATSLANATPAQQRTLLGESLYPLVDQIE 590
Score = 172 (65.6 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 62/219 (28%), Positives = 102/219 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L+ F++ + S +V + S GYG+V YS + A A++KL
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + + R D S NL+VKNLD + + L E FS G I S ++
Sbjct: 109 YSYLNGKMIRI-TYSSR-DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFER-------MRKERAE---------- 179
D G S+G+G + K A K + ++ +RKE E
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 180 LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+Y KN+++ + ELK F Q G+ISS +MR G S+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSR 265
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 275 (101.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 57/134 (42%), Positives = 83/134 (61%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
G ++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK
Sbjct: 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSS-FNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+ G +++V FI R DR QE ++ F NLYVKNL ++ TE+ L E F +G+ITS
Sbjct: 173 VNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSH 232
Query: 134 VISKDANGTSKGFG 147
+ D G S+ FG
Sbjct: 233 KLMLDEEGRSRRFG 246
Score = 151 (58.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ L ++F +G I S K+++ +EG+S+ +GFV Y P+SAL A+ L
Sbjct: 204 NLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGL 263
Query: 76 QGATV-ERMELYVGPFIRRADRIQE 99
G + + LYV + +A+R QE
Sbjct: 264 HGKQLGDNKFLYVARALSKAERQQE 288
Score = 65 (27.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERA 178
+K LYVARA KAER+ + + E ++++A
Sbjct: 271 NKFLYVARALSKAERQQEINRKLEERKRQKA 301
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 74/169 (43%), Positives = 101/169 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +EG SKGYGFV
Sbjct: 84 MWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y +A AIE++ G + L+V F R DR E + F N+Y+KN DDM
Sbjct: 143 HYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+E L FS++G+ S+ + KDA+G SK FG +V+ KA + A+
Sbjct: 203 DESLRSVFSKYGQTLSVKVMKDASGKSKRFG----FVSFDSHKAAKNAV 247
Score = 213 (80.0 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 52/159 (32%), Positives = 83/159 (52%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ L +FSK+G S KV+ GKSK +GFV + + ++A +A+E +
Sbjct: 191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDM 250
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNN-------------LYVKNLDDDMTEEILV 121
G + ++VG ++ +R E F LY+KNLDD + +E L
Sbjct: 251 NGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA 160
++FS FG I + + ++A G SKGFG + A KA
Sbjct: 311 KEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKA 348
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 38/89 (42%), Positives = 58/89 (65%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVD 189
+D NG + + ++V RAQKK ER+A L+ FE+M+KER A+LY KN++D +D
Sbjct: 248 EDMNG--RDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ L++ FS G+I VK+M+ + G SKG
Sbjct: 306 DETLRKEFSVFGSICRVKVMQ-EAGQSKG 333
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 43/148 (29%), Positives = 74/148 (50%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + L + F+ G + S ++ ++S +S GYG+V + A A+E
Sbjct: 13 YVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISH--RSLGYGYVNFLQVGDAQKALET 70
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
+ ++ + + + +R D S N+++KNLD + + L E FS FGKI S
Sbjct: 71 MNFDLIKGKSIRL-MWSQR-DACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSK 128
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAER 162
+ D G SKG+G V Y + Q+ A+R
Sbjct: 129 VMTDEEG-SKGYGF-VHY--QDQRAADR 152
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 47/151 (31%), Positives = 74/151 (49%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS-KVLYVARAQKKAER 162
+LYV +L +D+TE++L KF+ G + S+ I +D + S G+G L V AQK E
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 163 --------KAILRAQFER---MRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K+I +R +RK ++ KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+ G SKG+ Q +R + M K
Sbjct: 131 TDEEG-SKGYGFVHYQDQRAADRAIEEMNGK 160
Score = 114 (45.2 bits), Expect = 0.00092, P = 0.00092
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TID+ L + FS FG I KV+ + G+SKG+G + + +PE+A A+ ++ G
Sbjct: 296 YIKNLDDTIDDETLRKEFSVFGSICRVKVM-QEAGQSKGFGLICFFSPEAAAKAMAEMNG 354
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 77/203 (37%), Positives = 114/203 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + FS++GK S+ + D++G SKGFG +V+ +A +KA+ + +
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFG----FVSFDSHEAAKKAVEEMNGRDINGQ 316
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + ELKQ F Q
Sbjct: 317 LIFVGRAQKKVERQAELKQMFEQ 339
Score = 223 (83.6 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 51/153 (33%), Positives = 83/153 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
++ S N ++KN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A
Sbjct: 242 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 301
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDD 114
A+E++ G + ++VG ++ +R E G LY+KNLDD
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 361
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L +FS FG I+ + + ++ G SKGFG
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFG 393
Score = 152 (58.6 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVD 189
++ NG + ++++V RAQKK ER+A L+ FE++++ER +LY KN++D +D
Sbjct: 306 EEMNG--RDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 363
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+ +L+ FS G+IS VK+M+ + G SKG + + + T + M
Sbjct: 364 DEKLRNEFSSFGSISRVKVMQ-EEGQSKGFGLICFSSPEDATKAMTEM 410
Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TID+ KL FS FG I KV+ +EG+SKG+G + +S+PE A A+ ++ G
Sbjct: 354 YIKNLDDTIDDEKLRNEFSSFGSISRVKVM-QEEGQSKGFGLICFSSPEDATKAMTEMNG 412
Score = 125 (49.1 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 42/138 (30%), Positives = 68/138 (49%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGS-KVLYVARAQKKAER 162
+LYV +L D+TE++L KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 163 KA--ILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
I++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G SKG+ Q +
Sbjct: 189 SDDQG-SKGYAFVHFQNQ 205
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 77/203 (37%), Positives = 114/203 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + FS++GK S+ + D++G SKGFG +V+ +A +KA+ + +
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFG----FVSFDSHEAAKKAVEEMNGRDINGQ 258
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + ELKQ F Q
Sbjct: 259 LIFVGRAQKKVERQAELKQMFEQ 281
Score = 223 (83.6 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 51/153 (33%), Positives = 83/153 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
++ S N ++KN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 243
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDD 114
A+E++ G + ++VG ++ +R E G LY+KNLDD
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 303
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L +FS FG I+ + + ++ G SKGFG
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFG 335
Score = 152 (58.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVD 189
++ NG + ++++V RAQKK ER+A L+ FE++++ER +LY KN++D +D
Sbjct: 248 EEMNG--RDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 305
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+ +L+ FS G+IS VK+M+ + G SKG + + + T + M
Sbjct: 306 DEKLRNEFSSFGSISRVKVMQ-EEGQSKGFGLICFSSPEDATKAMTEM 352
Score = 135 (52.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TID+ KL FS FG I KV+ +EG+SKG+G + +S+PE A A+ ++ G
Sbjct: 296 YIKNLDDTIDDEKLRNEFSSFGSISRVKVM-QEEGQSKGFGLICFSSPEDATKAMTEMNG 354
Score = 125 (49.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 42/138 (30%), Positives = 68/138 (49%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGS-KVLYVARAQKKAER 162
+LYV +L D+TE++L KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 163 KA--ILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
I++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G SKG+ Q +
Sbjct: 131 SDDQG-SKGYAFVHFQNQ 147
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 325 (119.5 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 79/203 (38%), Positives = 112/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +ID+ L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E A AIEK+ G + +++VG F R DR E F N+Y+KNL +DM
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + FS FG S+ + D +G SKGFG +V+ + + RKA+ + + +
Sbjct: 204 DERLQDLFSRFGPALSVKVMTDESGKSKGFG----FVSFERHEDARKAVDEMNGKDLNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK F Q
Sbjct: 260 QIYVGRAQKKVERQTELKHKFGQ 282
Score = 163 (62.4 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 40/102 (39%), Positives = 62/102 (60%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV + + G+SKG+GFV +S+PE A
Sbjct: 300 RCQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEAT 357
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R Q + +N Y++ +
Sbjct: 358 KAVTEMNGRIVATKPLYVALAQRKEER-Q--AHLSNQYMQRM 396
Score = 136 (52.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 69/288 (23%), Positives = 113/288 (39%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
NLYVKNLDD + +E L ++FS FG ITS ++ + G SKGFG +V + + KA
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFG----FVCFSSPEEATKA 359
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIEL---KQYFSQCGTISSV-----KIMRTDRGIS 216
+ + + LY + +E + QY + + S+V + +G+S
Sbjct: 360 VTEMNGRIVATK--PLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPFQPAQGLS 417
Query: 217 KGHCM-AIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMI 275
G+ M A A T+ T Y +QGP + +Q P
Sbjct: 418 -GYFMTATAPTQNRGTYYAPNQTTQQGPSARGSAQGTRAHPFQNMSSAIH-PSNTMPSFS 475
Query: 276 PNGXXXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQA 335
+G + TQ G + P + Q Y + P
Sbjct: 476 TSGPTSSQAVRHRTASTS--TQMMGPHPAAASTAAAPAARTVTQY-KYTAGVRNPPQHLN 532
Query: 336 AANNLTNGNHRAAASN-ENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
+T +A E+L+ SML + P +K +LG+ L+ L++ +
Sbjct: 533 TQPQVTTQRSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAM 580
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 323 (118.8 bits), Expect = 1.8e-28, P = 1.8e-28
Identities = 76/203 (37%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 21 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 79
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 80 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 139
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 140 DERLKELFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 195
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 196 QIYVGRAQKKVERQTELKRKFEQ 218
Score = 235 (87.8 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 56/153 (36%), Positives = 83/153 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 121 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 180
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 181 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 240
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 241 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Score = 163 (62.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 226 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 283
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 284 KAVTEMNGRIVATKPLYVALAQRKEER 310
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 186 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 243
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 244 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 297
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 298 PLYVALAQR 306
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 79/303 (26%), Positives = 117/303 (38%)
Query: 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLY 152
+ DRI N LYVKNLDD + +E L ++FS FG ITS + + G SKGFG +
Sbjct: 220 KQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----F 273
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIEL---KQYFSQCGTISSVK-- 207
V + + KA+ + + LY + +E + QY + ++ +V
Sbjct: 274 VCFSSPEEATKAVTEMNGRIVATK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNP 331
Query: 208 -IMRTDRGISKGHCMA-IAQTKRERTSYLRIMYAKQG-PGLASTIFPVHPTLYQRALQVY 264
I G+ MA I QT+ Y A+ P T P +Q
Sbjct: 332 VINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAI 391
Query: 265 Q--APDFRHGGMIPNGXXXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS 322
+ AP M P +A S TQ G A P + + P
Sbjct: 392 RPAAPRPPFSTMRPASSQVPRVMSTQRVANTS-TQTMGPRPAAAATAATPAVRT---VPQ 447
Query: 323 YNYPISQPRAGQAAANNLTNGNHRAAA---SNENLS-SMLVATSPDERKDILGQRLYPLV 378
Y Y Q + A E L+ SML + P E+K +LG+RL+PL+
Sbjct: 448 YKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 507
Query: 379 KKL 381
+ +
Sbjct: 508 QSM 510
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 323 (118.8 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 76/203 (37%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 282 (104.3 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 107/400 (26%), Positives = 168/400 (42%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAATAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 323 (118.8 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 76/203 (37%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L E F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 280 (103.6 bits), Expect = 8.5e-23, P = 8.5e-23
Identities = 107/400 (26%), Positives = 168/400 (42%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 320 (117.7 bits), Expect = 4.3e-28, P = 4.3e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 40 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 98
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 99 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 158
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 159 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 214
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 215 QIYVGRAQKKVERQTELKRKFEQ 237
Score = 278 (102.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 140 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 199
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 200 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 259
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 260 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 314
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 315 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 372
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 373 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 432
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 433 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 488
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 489 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 528
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 53 KSKGYGFVQYSTP---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLY 107
+S GY +V + P E ALD + + ++G V M P +R+ S N++
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIF 57
Query: 108 VKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
+KNLD + + L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 58 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 112
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 320 (117.7 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 278 (102.9 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 320 (117.7 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 278 (102.9 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 320 (117.7 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 278 (102.9 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 320 (117.7 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 278 (102.9 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 320 (117.7 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 75/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQ 282
Score = 278 (102.9 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 418 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 477
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 478 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 533
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 137 (53.3 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 48/164 (29%), Positives = 74/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 317 (116.6 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 74/203 (36%), Positives = 113/203 (55%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
++ L + FS++G S+ + D NG S+GFG +V+ + + ++A+ + M +
Sbjct: 204 DDKLKDIFSKYGNAMSIRVMTDENGKSRGFG----FVSFERHEDAQRAVDEMNGKEMNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + ELK+ F Q
Sbjct: 260 LIYVGRAQKKVERQTELKRKFEQ 282
Score = 270 (100.1 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 106/402 (26%), Positives = 164/402 (40%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ KL IFSK+G+ S +V+ + GKS+G+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + +YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + D G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMDG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I Q +
Sbjct: 360 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQ 417
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--AP------DFRHGGMIPNGX 279
Y A+ P T V P +Q + AP R +P
Sbjct: 418 NRAAYYPTSQLAQLRPSPRWTTQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPR-M 476
Query: 280 XXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANN 339
M P T A P +++ P + +QP+
Sbjct: 477 MSTQRVATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMN-TQPQVTMQQPAV 535
Query: 340 LTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
G AS ML A P E+K +LG+RL+PL++ +
Sbjct: 536 HVQGQEPLTAS------MLAAAPPQEQKQMLGERLFPLIQNM 571
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
L + FS FG I S + D NG SKG+G A ++A K
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 71/171 (41%), Positives = 102/171 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SGIGN F+KNL +IDN L +FS FG I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
++ L E FSE+G S+ + +D++G SKGFG +V +A +KA+L
Sbjct: 211 DDDKLKELFSEYGPTESVKVIRDSSGKSKGFG----FVRYETHEAAQKAVL 257
Score = 231 (86.4 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ LYVG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 320 EEFSSFGSISRAKVMVEV-GQGKGFG 344
Score = 152 (58.6 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 40/88 (45%), Positives = 56/88 (63%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDE 190
D +G K KVLYV RAQKK ER A LR +FER+R KE++ +Y KN+++ +D+
Sbjct: 258 DLHG--KSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDD 315
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKG 218
+LK+ FS G+IS K+M + G KG
Sbjct: 316 EKLKEEFSSFGSISRAKVM-VEVGQGKG 342
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TID+ KL + FS FG I +KV+V + G+ KG+G + +S+ E A A++++ G
Sbjct: 305 YIKNLDETIDDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNG 363
Query: 78 ATVERMELYV 87
V L V
Sbjct: 364 RIVGSKPLQV 373
Score = 111 (44.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + DR+++ S N+++KNLD + L FS FG I S +
Sbjct: 81 FDLINGKPFRL-MWSQPDDRLRK-SGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVV 138
Query: 137 KDANGTSKGF 146
D NG SKG+
Sbjct: 139 CDDNG-SKGY 147
Score = 97 (39.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
++ +YV R + ER A +R R + ++ KN D++D+ +LK+ FS+ G SV
Sbjct: 172 NRQVYVGRFKFPEERAAEVRT---RDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESV 228
Query: 207 KIMRTDRGISKG 218
K++R G SKG
Sbjct: 229 KVIRDSSGKSKG 240
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 70/171 (40%), Positives = 103/171 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
+E L E F E+G S+ + +DA+G SKGFG +V +A +KA+L
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFG----FVRYETHEAAQKAVL 257
Score = 233 (87.1 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ LYVG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 320 EEFSSFGSISRAKVMMEV-GQGKGFG 344
Score = 151 (58.2 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 49/128 (38%), Positives = 71/128 (55%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDE 190
D +G K KVLYV RAQKK ER A LR +FER+R KE++ +Y KN+++ +++
Sbjct: 258 DLHG--KSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
+LK+ FS G+IS K+M + G KG + + E T + M G + S
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK-- 369
Query: 251 PVHPTLYQ 258
P+H TL Q
Sbjct: 370 PLHVTLGQ 377
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TI++ KL + FS FG I +KV++ + G+ KG+G V +S+ E A A++++ G
Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNG 363
Query: 78 ATVERMELYV 87
V L+V
Sbjct: 364 RIVGSKPLHV 373
Score = 110 (43.8 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + DR+++ S N+++KNLD + L FS FG I S +
Sbjct: 81 FDLINGKPFRL-MWSQPDDRLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 137 KDANGTSKGF 146
D NG SKG+
Sbjct: 139 CDDNG-SKGY 147
Score = 99 (39.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
++ +YV R + ER A +R R R ++ KNI D++D+ +LK+ F + G SV
Sbjct: 172 NRQVYVGRFKFPEERAAEVRT---RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 207 KIMRTDRGISKG 218
K++R G SKG
Sbjct: 229 KVIRDASGKSKG 240
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 70/171 (40%), Positives = 102/171 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
+E L + FSE+G S+ + +DA G SKGFG +V +A +KA+L
Sbjct: 211 DDEKLKKLFSEYGPTESVKVIRDATGKSKGFG----FVRYETHEAAQKAVL 257
Score = 224 (83.9 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN ID+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ +L
Sbjct: 200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ L VG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 260 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 320 EEFSLFGSISRAKVMMEV-GQGKGFG 344
Score = 127 (49.8 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDEIELKQY 196
K KVL V RAQKK ER A LR +FER++ K++ +Y KN+++ +++ +LK+
Sbjct: 262 KSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEE 321
Query: 197 FSQCGTISSVKIMRTDRGISKG 218
FS G+IS K+M + G KG
Sbjct: 322 FSLFGSISRAKVMM-EVGQGKG 342
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TI++ KL + FS FG I +KV++ + G+ KG+G V +S+ E A A+ ++ G
Sbjct: 305 YIKNLDETINDEKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 78 ATVERMELYV 87
V L+V
Sbjct: 364 RVVGSKTLHV 373
Score = 105 (42.0 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + D +++ S N+++KNLD + L FS FG I S +
Sbjct: 81 FDLINGKPFRL-MWSQPDDHLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 137 KDANGTSKGF 146
D NG SKG+
Sbjct: 139 CDDNG-SKGY 147
Score = 99 (39.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
++ +YV R + ER A +R R R ++ KN D++D+ +LK+ FS+ G SV
Sbjct: 172 NRQVYVGRFKFPEERAAEVRT---RDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESV 228
Query: 207 KIMRTDRGISKG 218
K++R G SKG
Sbjct: 229 KVIRDATGKSKG 240
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 70/171 (40%), Positives = 102/171 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN +DM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
+E L E FS +G S+ + +DA+G SKGFG +V +A +KA+L
Sbjct: 211 DDEKLKEIFSGYGPTESVKVIRDASGKSKGFG----FVRYETHEAAQKAVL 257
Score = 229 (85.7 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 56/146 (38%), Positives = 81/146 (55%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN + +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 200 NVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G ++ LYVG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 320 EEFSSFGSISRAKVMVEV-GQGKGFG 344
Score = 157 (60.3 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 49/128 (38%), Positives = 71/128 (55%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDE 190
D +G K KVLYV RAQKK ER A LR +FER+R KE++ +Y KN+++ +D+
Sbjct: 258 DLHG--KSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDD 315
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
+LK+ FS G+IS K+M + G KG + + + T + M G + S
Sbjct: 316 EKLKEEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEDATKAVDEM---NGRTVGSK-- 369
Query: 251 PVHPTLYQ 258
P+H TL Q
Sbjct: 370 PLHVTLGQ 377
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TID+ KL + FS FG I +KV+V + G+ KG+G V +S+ E A A++++ G
Sbjct: 305 YIKNLDETIDDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNG 363
Query: 78 ATVERMELYV 87
TV L+V
Sbjct: 364 RTVGSKPLHV 373
Score = 110 (43.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + DR+++ S N+++KNLD + L FS FG I S +
Sbjct: 81 FDLINGKPFRL-MWSQPDDRLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 137 KDANGTSKGF 146
D NG SKG+
Sbjct: 139 CDDNG-SKGY 147
Score = 89 (36.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
++ +YV R + ER A +R R R ++ KN +++D+ +LK+ FS G SV
Sbjct: 172 NRQVYVGRFKFPEERAAEVRT---RDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESV 228
Query: 207 KIMRTDRGISKG 218
K++R G SKG
Sbjct: 229 KVIRDASGKSKG 240
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 308 (113.5 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 65/151 (43%), Positives = 97/151 (64%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L + FS+FGK+ S+ + +D +G S+GFG
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDDSGHSRGFG 234
Score = 237 (88.5 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 103/391 (26%), Positives = 161/391 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D +L +FS+FG + S KV+ G S+G+GFV + E A
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LYVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS +G ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFG----FVCFSSPEEATKAVTEMNGRIVG 359
Query: 175 KERAELYKNINDEVDE---IELKQYFSQCGTISSV--KIMRTDRGISKGHCMAIAQTKRE 229
+ LY + +E I QY + T+ ++ I+ + + + A+ Q +
Sbjct: 360 TK--PLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQ 417
Query: 230 RTSYLRIMYAKQGPGLASTIFPVHPT-LYQRALQVYQAPDFRHGGMIPNGXXXXXXXXXX 288
Y + P T P P+ Y V + + P G
Sbjct: 418 APYYGSGPPIQPAPRW--TAQPPRPSSAYPPGASVVRPAAMSRRPLTPVGSSRQVSTHVP 475
Query: 289 XMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAA 348
+ P TQ R A + P S +P + S P A +
Sbjct: 476 HLVPH--TQ-RVANIGTQTTGPSMTGCSTPSRPLLTHTYSTP----AHRTDRVQEPAVHV 528
Query: 349 ASNENLSSMLVATSP-DERKDILGQRLYPLV 378
E L++ ++A +P E+K ++G+RL+PLV
Sbjct: 529 PGQEPLTASMLAAAPLHEQKQMIGERLFPLV 559
Score = 136 (52.9 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D +G S+GFG
Sbjct: 123 GNILSCKVVCDEHG-SRGFG 141
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 72/203 (35%), Positives = 111/203 (54%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQ 282
Score = 232 (86.7 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L + FS FG ITS + + G SKGFG
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Score = 148 (57.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ FE+M+++R LY KN++D +D+
Sbjct: 250 EMNG--KELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDD 307
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
L++ FS GTI+S K+M + G SKG + E T
Sbjct: 308 ERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEA 346
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQ 195
K NG G KV +V + + + ER+A L A+ KE +Y KN +++D+ LK
Sbjct: 156 KKMNGMLLN-GRKV-FVGQFKSRKEREAELGAR----AKEFPNVYIKNFGEDMDDERLKD 209
Query: 196 YFSQCGTISSVKIMRTDRGISKG 218
F + G SVK+M + G SKG
Sbjct: 210 LFGKFGPALSVKVMTDESGKSKG 232
Score = 77 (32.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD--ANGTS 143
+LYV +L D+TE +L EKFS G I S+ I +D +G+S
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS 52
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 64/151 (42%), Positives = 89/151 (58%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L + F +FG S+ + D +G SKGFG
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG 234
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQG 77
A++++ G
Sbjct: 245 QKAVDEMNG 253
Score = 96 (38.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQ 195
K NG G KV +V + + + ER+A L A+ KE +Y KN +++D+ LK
Sbjct: 156 KKMNGMLLN-GRKV-FVGQFKSRKEREAELGAR----AKEFPNVYIKNFGEDMDDERLKD 209
Query: 196 YFSQCGTISSVKIMRTDRGISKG 218
F + G SVK+M + G SKG
Sbjct: 210 LFGKFGPALSVKVMTDESGKSKG 232
Score = 77 (32.2 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD--ANGTS 143
+LYV +L D+TE +L EKFS G I S+ I +D +G+S
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS 52
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 64/151 (42%), Positives = 92/151 (60%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSS---FNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
++ L E FS FG S+ + D G S+GFG
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFG 234
Score = 253 (94.1 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 107/400 (26%), Positives = 171/400 (42%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ ++ L ++FS +G ITS + + G SKGFG +V + + KA+ R+
Sbjct: 305 IDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFG----FVCFSSPEEATKAVTEMN-GRIV 358
Query: 175 KERAELYKNINDEVDE---IELKQYFSQCGTISSVK--IMRTDRGISKGHCMAIAQTKRE 229
+ LY + +E I QY + T+ ++ ++ + + + A+ Q
Sbjct: 359 STKP-LYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPN- 416
Query: 230 RTSYLR--IMYAKQGPGLASTIFPVHPTLYQRALQVYQA-PDFRHGGMIPNGXXXXXXXX 286
RT Y + +Q P S P YQ + +A P R I
Sbjct: 417 RTFYSPNPVAPVRQAPQWTS--HQSRPPQYQPPAPLMRAVPPRRMSSNI--STMKQASTQ 472
Query: 287 XXXMAPDSVTQYR-GAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAAN-NLTNGN 344
+AP S G G P ++ + P Y Y + N +L
Sbjct: 473 VPRVAPHSQRVANIGTQTAGARAQVNPSIMRTM--PHYKYSCAVRNVQPIGTNTHLQQVM 530
Query: 345 HRAAA--SNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
A E L+ S L + P E+K +LG+RLYPL+ ++
Sbjct: 531 EPAVLMQGQEPLTASSLASAPPQEQKQMLGERLYPLIHEM 570
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNLD+ + + L + FS F
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGLRK-------SGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D +G S+G+G
Sbjct: 123 GNILSCKVVCDEHG-SRGYG 141
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 72/203 (35%), Positives = 111/203 (54%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
+E L + F +FG S+ + D +G SKGFG +V+ + + +KA+ + + +
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFERHEDAQKAVDEMNGKELNGK 259
Query: 177 RAELYKNINDEVDEIELKQYFSQ 199
+ + + + ELK+ F Q
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQ 282
Score = 281 (104.0 bits), Expect = 5.5e-23, P = 5.5e-23
Identities = 102/392 (26%), Positives = 165/392 (42%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L + FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCM-AIAQTKRERTSY 233
+ LY + +E + ++SV+ + R G+ M A+ QT+ Y
Sbjct: 360 TK--PLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Query: 234 LRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXXXXXXMA 291
A+ P T P +Q + AP M P +A
Sbjct: 418 PPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVA 477
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRA-AAS 350
S TQ G A + + + Y + P+ + A +T
Sbjct: 478 NTS-TQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQG 536
Query: 351 NENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
E L+ S L + P ++K +LG+RL+PL++ +
Sbjct: 537 QETLTASRLASAPPQKQKQMLGERLFPLIQAM 568
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 233 (87.1 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 18 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 77
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 78 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 137
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 138 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 169
Score = 163 (62.4 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 123 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 180
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEER 207
Score = 151 (58.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 83 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 140
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 141 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 194
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 195 PLYVALAQR 203
Score = 124 (48.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 35/118 (29%), Positives = 61/118 (51%)
Query: 86 YVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG 141
+VG F R +R E G+ F N+Y+KN +DM +E L + F +FG S+ + D +G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 142 TSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQ 199
SKGFG +V+ + + +KA+ + + ++ + + + ELK+ F Q
Sbjct: 62 KSKGFG----FVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 115
Score = 66 (28.3 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L Q+ +RM RA
Sbjct: 193 TKPLYVALAQRKEERQAHLTNQYMQRMASVRA 224
Score = 44 (20.5 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV-HPTLYQRA 260
+A+AQ K ER ++L Y ++ + + PV +P YQ A
Sbjct: 198 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPA 236
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 215 (80.7 bits), Expect = 9.1e-24, Sum P(2) = 9.1e-24
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 46 VVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSS-- 102
+VV E SKGY FV + T E+A AIEK+ G + +++VG F R +R E G+
Sbjct: 42 IVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 103 -FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
F N+Y+KN +++ +E L E FS+FGK S+ + +D NG SKGFG
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFG 147
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A
Sbjct: 98 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 157
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+E++ G + ++VG ++ +R E
Sbjct: 158 NKAVEEMNGKEISGKIIFVGRAQKKVERQAE 188
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+M
Sbjct: 81 VFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 136
Query: 210 RTDRGISKG 218
R G SKG
Sbjct: 137 RDPNGKSKG 145
Score = 81 (33.6 bits), Expect = 9.1e-24, Sum P(2) = 9.1e-24
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
++ NG K K+++V RAQKK ER+A L+ +FE+++
Sbjct: 162 EEMNG--KEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 272 (100.8 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 60/148 (40%), Positives = 88/148 (59%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R + +GN FVKNL +DN L+ FS FG+I S KV ++G SKGYG+V
Sbjct: 260 MWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF-EKGISKGYGYV 318
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T +SA AIEK+ G + + V F+ + +R + N ++ +N D+ +T EIL
Sbjct: 319 HFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVE---NKVFFRNADESITIEIL 375
Query: 121 VEKFSE-FGKITSLVISKDANGTSKGFG 147
++ S FG+I S ++ DANG SKG G
Sbjct: 376 QQELSNRFGEIESCILKNDANGKSKGLG 403
Score = 148 (57.2 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 62/250 (24%), Positives = 118/250 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG---KSKGYGFVQYSTPESALDAIEK 74
+V +LA+ ++ + L+++FSK G + + V ++ +S GY +V + A A++
Sbjct: 187 YVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDT 246
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V + R D + ++ N++VKNL+ + +L + FS FG I S
Sbjct: 247 LNYTLVHGKPCRIMWSYR--DPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCK 304
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKA----ILR---------AQFERMRKERAELY 181
+ + G SKG+G + +KA K IL ++ ER + E +
Sbjct: 305 VEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENKVFF 363
Query: 182 KNINDEVD-EIELKQYFSQCGTISSVKIMRTD-RGISKGHCMAIAQTKRERTSYLRIMYA 239
+N ++ + EI ++ ++ G I S I++ D G SKG + + + K + + +I+
Sbjct: 364 RNADESITIEILQQELSNRFGEIESC-ILKNDANGKSKG--LGLVEFKNQEDAQ-KIL-T 418
Query: 240 KQGPGLASTI 249
+ G + STI
Sbjct: 419 ESGALIISTI 428
Score = 54 (24.1 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 295 VTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLT--NGNHRAAASNE 352
+ +Y+ + + H N PM + + SQP + Q ++ + NGN + N
Sbjct: 583 INRYQQHLPHQHIN-PMYTQQPYFPQQQQSSSSSQPSSSQPQPSSPSHLNGNTTTTSPNT 641
Query: 353 NLSSMLVATSPDERKDI 369
S L T+P ++ ++
Sbjct: 642 RYSKTLNGTTPFKKSNL 658
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 278 (102.9 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 107/400 (26%), Positives = 167/400 (41%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 153 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 212
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 213 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 272
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L ++FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 273 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 327
Query: 175 KERAELYKNINDEVDEIEL---KQYFSQCGTISSVK---IMRTDRGISKGHCMA-IAQTK 227
+ LY + +E + QY + ++ +V I G+ MA I QT+
Sbjct: 328 TK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 385
Query: 228 RERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGXXXXXXX 285
Y A+ P T P +Q + AP M P
Sbjct: 386 NRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVM 445
Query: 286 XXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP--ISQPRAGQAAANNLTNG 343
+A S TQ G A P + + P Y Y + P+ A +T
Sbjct: 446 STQRVANTS-TQTMGPRPAAAAAAATPAVRT---VPQYKYAAGVRNPQQHLNAQPQVTMQ 501
Query: 344 NHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ +SML + P E+K +LG+RL+PL++ +
Sbjct: 502 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 541
Score = 209 (78.6 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 54/163 (33%), Positives = 89/163 (54%)
Query: 41 IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE- 99
++ S VV + G SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 93 LRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 151
Query: 100 GS---SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARA 156
G+ F N+Y+KN +DM +E L + F +FG S+ + D +G SKGFG +V+
Sbjct: 152 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG----FVSFE 207
Query: 157 QKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQ 199
+ + +KA+ + + ++ + + + ELK+ F Q
Sbjct: 208 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 250
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 55/220 (25%), Positives = 94/220 (42%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N A + + +V +L + L++ FS G I S +V +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G V M P +R++ + + + + + E
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAER 121
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE 179
+EK NG + ++V R + + ER+A L A+ KE
Sbjct: 122 AIEKM---------------NGML--LNDRKVFVGRFKSRKEREAELGAR----AKEFTN 160
Query: 180 LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+Y KN +++D+ LK F + G SVK+M + G SKG
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 200
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 209 (78.6 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 54/153 (35%), Positives = 80/153 (52%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F G S KV+ + GKSKG+GFV + E A
Sbjct: 57 ARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDA 113
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 114 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 173
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 174 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 205
Score = 188 (71.2 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 52/157 (33%), Positives = 83/157 (52%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GS---S 102
VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E G+
Sbjct: 2 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 61
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
F N+Y+KN +DM +E L + F G S+ + D +G SKGFG +V+ + + +
Sbjct: 62 FTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFG----FVSFERHEDAQ 114
Query: 163 KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQ 199
KA+ + + ++ + + + ELK+ F Q
Sbjct: 115 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 151
Score = 163 (62.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 159 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 216
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 217 KAVTEMNGRIVATKPLYVALAQRKEER 243
Score = 151 (58.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 119 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 176
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 177 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 230
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 231 PLYVALAQR 239
Score = 66 (28.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 148 SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L Q+ +RM RA
Sbjct: 229 TKPLYVALAQRKEERQAHLTNQYMQRMASVRA 260
Score = 44 (20.5 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV-HPTLYQRA 260
+A+AQ K ER ++L Y ++ + + PV +P YQ A
Sbjct: 234 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPA 272
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 268 (99.4 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 76/204 (37%), Positives = 116/204 (56%)
Query: 1 MWSTPNSEARL---SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGY 57
MWS + R +G N +VKNL S+I + L ++F FG I S KVV + G+SKG+
Sbjct: 95 MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGF 153
Query: 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI-QEGSSFN-NLYVKNLDDDM 115
GFVQ+ T +SA+ A L G+ V +L+V FI + +R G+ + N+YVKNL + +
Sbjct: 154 GFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETV 213
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS-KVLYVARAQKKAERKAILRAQFERMR 174
T++ L FS++G ++S+V+ +D G S+GFG A+K E L+ +++
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLF 273
Query: 175 KERAELYKNINDEVDEIELKQYFS 198
+A L K DE E+ LKQ FS
Sbjct: 274 VGKA-LKK---DERREM-LKQKFS 292
Score = 226 (84.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 57/160 (35%), Positives = 87/160 (54%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL T+ + LH +FS++G + S V+ G+S+G+GFV + PE+A A+E L
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 76 QGATVERMELYVGPFIRRADR---IQEGSSFN----------NLYVKNLDDDMTEEILVE 122
G + +L+VG +++ +R +++ S N NLYVKNL + M E L E
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 123 KFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
F +G+I S + NG SKGFG K+A+R
Sbjct: 323 IFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
Score = 144 (55.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 44/139 (31%), Positives = 71/139 (51%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALD 70
S G+ +V +L+ + L FS + S + S GKS Y ++ + +P SA +
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 71 AIEKLQGATVERMELYVGPFIRR--ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFG 128
A+ +L + ++ + + + +R A R + + F NLYVKNLD +T L F FG
Sbjct: 78 AMTRLNHSDLKGKAMRI-MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFG 136
Query: 129 KITSLVISKDANGTSKGFG 147
I S + ++ NG SKGFG
Sbjct: 137 SILSCKVVEE-NGQSKGFG 154
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ +++ +L +IF +G I S+KV+ + G+SKG+GFV +S E + A L
Sbjct: 305 NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 76 QGATVERMELYVGPFIRRADRIQ 98
G V+ + V R+ DRI+
Sbjct: 365 NGFLVDGKPIVVRVAERKEDRIK 387
Score = 117 (46.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 147 GSKVLYVARAQKKAERKAILRAQFE-----RMRKERAELY-KNINDEVDEIELKQYFSQC 200
GSK L+V +A KK ER+ +L+ +F + + LY KN+++ ++E L++ F
Sbjct: 268 GSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCY 327
Query: 201 GTISSVKIMRTDRGISKGH---CMAIAQTKRERTSYL 234
G I S K+M + G SKG C + + ++ YL
Sbjct: 328 GQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYL 364
Score = 98 (39.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 124 FSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-K 182
F +F S V ++ A S +G K L+VA+ K ER A+ Q + +Y K
Sbjct: 155 FVQFDTEQSAVSARSALHGSMVYGKK-LFVAKFINKDERAAMAGNQ------DSTNVYVK 207
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
N+ + V + L FSQ GT+SSV +MR G S+G
Sbjct: 208 NLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
Score = 71 (30.1 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFS 125
Q S F +LYV +L D+TE+ L++KFS
Sbjct: 15 QHSSRFGSLYVGDLSPDVTEKDLIDKFS 42
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ LYVG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 155
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 156 EEFSSFGSISRAKVMMEV-GQGKGFG 180
Score = 151 (58.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 49/128 (38%), Positives = 71/128 (55%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDE 190
D +G K KVLYV RAQKK ER A LR +FER+R KE++ +Y KN+++ +++
Sbjct: 94 DLHG--KSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 151
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
+LK+ FS G+IS K+M + G KG + + E T + M G + S
Sbjct: 152 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK-- 205
Query: 251 PVHPTLYQ 258
P+H TL Q
Sbjct: 206 PLHVTLGQ 213
Score = 146 (56.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/97 (36%), Positives = 58/97 (59%)
Query: 75 LQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G + ++YVG F R A+ R ++ ++F N++VKN+ DD+ +E L E F E+G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
S+ + +DA+G SKGFG +V +A +KA+L
Sbjct: 61 TESVKVIRDASGKSKGFG----FVRYETHEAAQKAVL 93
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL TI++ KL + FS FG I +KV++ + G+ KG+G V +S+ E A A++++ G
Sbjct: 141 YIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 78 ATVERMELYV 87
V L+V
Sbjct: 200 RIVGSKPLHV 209
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 220 (82.5 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/122 (40%), Positives = 69/122 (56%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ L G + +++VG F +R E ++ + K+ DDD
Sbjct: 135 HFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADFKDFDDDSD 194
Query: 117 EE 118
+E
Sbjct: 195 DE 196
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 44/160 (27%), Positives = 75/160 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E +
Sbjct: 5 YVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMN 64
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + + +R +++ S N+++KNL + + L FS FG I S ++
Sbjct: 65 FDVINGRPVRI-MWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRK 175
D G KG+G V + + Q+ AER L F RK
Sbjct: 123 CDEKGP-KGYGF-VHF--QKQESAERAIDALNGMFLNYRK 158
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 129 (50.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 52/201 (25%), Positives = 91/201 (45%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
E L ++ + + + +R +++ S N+++KNL + + L FS FG I S
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRKERAELYKNINDEVDEI 191
++ D G KG+G V + + Q+ AER + F RK +K+ + E
Sbjct: 119 CKVACDEKGP-KGYGF-VHF--QKQESAERAIDAMNGMFLNYRKIFVGRFKSHKER--EA 172
Query: 192 ELKQYFSQCGTISSVKIMRTD 212
E + Q T + VK D
Sbjct: 173 ERGAWARQ-STSADVKDFEED 192
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 129 (50.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 52/201 (25%), Positives = 91/201 (45%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
E L ++ + + + +R +++ S N+++KNL + + L FS FG I S
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRKERAELYKNINDEVDEI 191
++ D G KG+G V + + Q+ AER + F RK +K+ + E
Sbjct: 119 CKVACDEKGP-KGYGF-VHF--QKQESAERAIDAMNGMFLNYRKIFVGRFKSHKER--EA 172
Query: 192 ELKQYFSQCGTISSVKIMRTD 212
E + Q T + VK D
Sbjct: 173 ERGAWARQ-STSADVKDFEED 192
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 127 (49.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 52/201 (25%), Positives = 91/201 (45%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
E L ++ + + + +R +++ S N+++KNL + + L FS FG I S
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRKERAELYKNINDEVDEI 191
++ D G KG+G V + + Q+ AER + F RK +K+ + E
Sbjct: 119 CKVACDEKGP-KGYGF-VHF--QKQESAERAIDAMNGMFLNYRKIFVGRFKSHKER--EA 172
Query: 192 ELKQYFSQCGTISSVKIMRTD 212
E + Q T + VK D
Sbjct: 173 ERGAWARQ-STSADVKDFEED 192
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 217 (81.4 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 133 (51.9 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 52/201 (25%), Positives = 92/201 (45%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
E L ++ + + + +R +++ S N+++KNL + + L FS FG I S
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRKERAELYKNINDEVDEI 191
++ D G KG+G V + + Q+ AER ++ F RK +K+ + E
Sbjct: 119 CKVACDEKGP-KGYGF-VHF--QKQESAERAIDVMNGMFLNYRKIFVGRFKSHKER--EA 172
Query: 192 ELKQYFSQCGTISSVKIMRTD 212
E + Q T + VK D
Sbjct: 173 ERGAWARQ-STSADVKDFEED 192
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 235 (87.8 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 56/153 (36%), Positives = 83/153 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 17 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 76
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 77 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 136
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG ITS + + G SKGFG
Sbjct: 137 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 168
Score = 163 (62.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 122 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 179
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEER 206
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 82 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 139
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI+S K+M + G SKG + E T + M + + +T
Sbjct: 140 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVATK- 193
Query: 251 PVHPTLYQR 259
P++ L QR
Sbjct: 194 PLYVALAQR 202
Score = 145 (56.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 79/303 (26%), Positives = 117/303 (38%)
Query: 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLY 152
+ DRI N LYVKNLDD + +E L ++FS FG ITS + + G SKGFG +
Sbjct: 116 KQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG----F 169
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIEL---KQYFSQCGTISSVK-- 207
V + + KA+ + + LY + +E + QY + ++ +V
Sbjct: 170 VCFSSPEEATKAVTEMNGRIVATK--PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNP 227
Query: 208 -IMRTDRGISKGHCMA-IAQTKRERTSYLRIMYAKQG-PGLASTIFPVHPTLYQRALQVY 264
I G+ MA I QT+ Y A+ P T P +Q
Sbjct: 228 VINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAI 287
Query: 265 Q--APDFRHGGMIPNGXXXXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS 322
+ AP M P +A S TQ G A P + + P
Sbjct: 288 RPAAPRPPFSTMRPASSQVPRVMSTQRVANTS-TQTMGPRPAAAATAATPAVRT---VPQ 343
Query: 323 YNYPISQPRAGQAAANNLTNGNHRAAA---SNENLS-SMLVATSPDERKDILGQRLYPLV 378
Y Y Q + A E L+ SML + P E+K +LG+RL+PL+
Sbjct: 344 YKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 403
Query: 379 KKL 381
+ +
Sbjct: 404 QSM 406
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 36/118 (30%), Positives = 61/118 (51%)
Query: 86 YVGPFIRRADRIQE-GS---SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG 141
+VG F R +R E G+ F N+Y+KN +DM +E L E F +FG S+ + D +G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 142 TSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQ 199
SKGFG +V+ + + +KA+ + + ++ + + + ELK+ F Q
Sbjct: 61 KSKGFG----FVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 114
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 217 (81.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 68/210 (32%), Positives = 102/210 (48%)
Query: 3 STPNSEARLS-GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
S N E L N FVK+L ++ L +FSK+G + SSKV++ +G S GYGFV+
Sbjct: 96 SVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVR 155
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+S+P+ + AIE+L G + +L + NNL++K L D+T++ L
Sbjct: 156 FSSPQESAAAIEELDGYQYQNKKLLCR-LSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE-- 179
+ F FGKI + D NG SK G +V + + KAI R+ K+
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAG----FVRFSSELDASKAIDAMNGVRINKDSGYPL 270
Query: 180 LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + E +I KQ Q TI KI+
Sbjct: 271 VVKYADTEQQKISRKQRKMQ--TIYQEKII 298
Score = 124 (48.7 bits), Expect = 0.00026, P = 0.00026
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N FV +L +D+ L Q+FS+FG +QS +V+ ++ G++KGYGFV++ + AL ++
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
+ G + L V + + G S + +N + + E+ L E+ E
Sbjct: 830 MNGFRIGSKFLKV-KLKNEKESMNSGKSHHQH--QNQNKNQNEQHLEEEEEE 878
Score = 58 (25.5 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 188 VDEIELKQYFSQCGTISSVKIMRT-DRGISKGH 219
VD+ L Q FSQ G + SV+++ D G +KG+
Sbjct: 780 VDDSYLFQLFSQFGKLQSVRVITDKDTGENKGY 812
Score = 44 (20.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 338 NNLTNGNHRAAASNENLSSMLVATSPDERKDILG-QRLYPLVKKLKVIT 385
NN N N+ +N NL++ T+ ++ + L PL IT
Sbjct: 709 NNNNNNNNNNNNNNNNLTTTTTTTTTTNTTNLTNLESLNPLSASSSSIT 757
Score = 40 (19.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 338 NNLTNGNHRAAASNENLSSMLVATSPDER 366
NN N N+ +N N+ T+P++R
Sbjct: 616 NNNNNNNNNNNYNNNNVIINTQQTTPNKR 644
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 177 (67.4 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 44 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 101
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRKEER 129
Score = 153 (58.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 4 EEMNG--KEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+ +L++ FS G+I+S K+M D G SKG + E T
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEAT 102
Score = 110 (43.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLY+KNLDD + +E L ++FS FG ITS + + +G SKGFG
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 91
Score = 79 (32.9 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 316 SNLQKPSYNYPISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRL 374
SN++ P +P QP +A Q A + G AS ML A P E+K +LG+RL
Sbjct: 298 SNVRSP---HPAIQPLQAPQPAVH--VQGQEPLTAS------MLAAAPPQEQKQMLGERL 346
Query: 375 YPLVKKL 381
+PL++ +
Sbjct: 347 FPLIQTM 353
Score = 49 (22.3 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 115 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 166
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 193 (73.0 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 29 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 87
Query: 61 QYSTPESALDAIEKLQG 77
+ T E+A AIEK+ G
Sbjct: 88 HFETQEAADKAIEKMNG 104
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 33/107 (30%), Positives = 49/107 (45%)
Query: 59 FVQYSTPESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
F Q + E ALD + + ++G + M P +R+ S N+++KNLD +
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSID 55
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
+ L + FS FG I S + D NG SKG+ A KA K
Sbjct: 56 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 101
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 186 (70.5 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 42/106 (39%), Positives = 61/106 (57%)
Query: 40 DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
D+ K VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 70 DVIKGKPVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 129
Query: 100 -GS---SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG 141
G+ F N+Y+KN +DM +E L + F +FG S+ + D +G
Sbjct: 130 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 44/117 (37%), Positives = 64/117 (54%)
Query: 30 KLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89
+L +F KFG S KV+ + GKSKG+GFV + E A A++++ G + ++YVG
Sbjct: 4 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 90 FIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILVEKFSEFGKITS 132
++ +R E F NLYVKNLDD + +E L ++FS FG ITS
Sbjct: 64 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Score = 132 (51.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ NG K K +YV RAQKK ER+ L+ +FE+M+++R LY KN++D +D+
Sbjct: 48 EMNG--KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 105
Query: 191 IELKQYFSQCGTISSVK 207
L++ FS GTI+S K
Sbjct: 106 ERLRKEFSPFGTITSAK 122
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 177 (67.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 36/68 (52%), Positives = 45/68 (66%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 40 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 98
Query: 61 QYSTPESA 68
+ T E+A
Sbjct: 99 HFETQEAA 106
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 53 KSKGYGFVQYSTP---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLY 107
+S GY +V + P E ALD + + ++G V M P +R+ S N++
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIF 57
Query: 108 VKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
+KNLD + + L + FS FG I S + D NG SKG+G V + Q+ AER
Sbjct: 58 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGF-VHF--ETQEAAER 108
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 166 (63.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 48/147 (32%), Positives = 73/147 (49%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
S PN + S N + L + ++ +F+ G+I+S K+V + G+S GYGFV
Sbjct: 31 SAPNVDIGESKT-NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVN 89
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y E AL A+ G ++ + V + R ++ +GS NLYV + MT L
Sbjct: 90 YVREEDALRAVSSFNGLRLQNKTIKVS-YARPSNDQIKGS---NLYVSGIPKSMTLHELE 145
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
F FG+I TS ++S + G SKG G
Sbjct: 146 SIFRPFGQIITSRILSDNVTGLSKGVG 172
Score = 91 (37.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
++ P+++ ++ G N +V + ++ +L IF FG I +S+++ G SKG GFV
Sbjct: 117 YARPSND-QIKG-SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFV 174
Query: 61 QYSTPESALDAIEKLQGA 78
++ + A AI+ L G+
Sbjct: 175 RFDKKDEADVAIKTLNGS 192
Score = 73 (30.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF 146
L+V NL D + +L + FS+FG I ++ I +D KG+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGY 416
Score = 66 (28.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQG 242
N++ + D+ L Q FSQ G I +VKI+R KG+ E +Y M + G
Sbjct: 380 NLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTE--AY-NAMLSLNG 436
Query: 243 PGLASTIFPV 252
LA V
Sbjct: 437 TNLAGKTLQV 446
Score = 49 (22.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 325 YPISQPRAGQAAANNLTNGNHRAAASNENLSSM---LVATSPDERKDILGQRLY 375
+ ++Q A Q A+ TNG A++ LS++ + AT P D G L+
Sbjct: 326 HAVAQQHAAQTASPPATNGQVAGLAAHAQLSALSASVAATLPPS--DTAGYCLF 377
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 177 (67.4 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 16 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 73
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 74 TKAVTEMNGRIVGSKPLYVALAQRKEER 101
Score = 110 (43.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLY+KNLDD + +E L ++FS FG ITS + + +G SKGFG
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 63
Score = 73 (30.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 147 GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 86 GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 118
Score = 49 (22.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTL--YQRALQVYQAP 267
SK +A+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 87 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 138
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 168 (64.2 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 50/147 (34%), Positives = 77/147 (52%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ A G S+G G
Sbjct: 143 QLFSQYGRIITSRILLDQATGVSRGVG 169
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S++++ Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 328
Score = 57 (25.1 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIR 317
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 168 (64.2 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 50/147 (34%), Positives = 77/147 (52%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ A G S+G G
Sbjct: 143 QLFSQYGRIITSRILLDQATGVSRGVG 169
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S++++ Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 328
Score = 57 (25.1 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIR 317
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 165 (63.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGISRGVG 169
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 170 (64.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +FS G+++S+K++ + G S GYGFV Y P A AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V +D I++ NLY+ L MT++ + E F +G+I S
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKDA----NLYISGLPKTMTQKDVEEMFGRYGRIINSR 150
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
V+ A+G S+G V ++ R K+AE + ++
Sbjct: 151 VLVDQASGLSRG----VAFI-RFDKRAEAEDAIK 179
Score = 98 (39.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
++ P+S++ N ++ L T+ + ++F ++G I +S+V+V Q G S+G F+
Sbjct: 109 YARPSSDSIKDA--NLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFI 166
Query: 61 QYSTPESALDAIEKLQG 77
++ A DAI+ L G
Sbjct: 167 RFDKRAEAEDAIKDLNG 183
Score = 77 (32.2 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 302
Score = 51 (23.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 264 NLGQDADEGILWQMFGPFGAVTNVKVIR 291
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 164 (62.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 106 (42.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 328
Score = 57 (25.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIR 317
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 164 (62.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 106 (42.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 328
Score = 57 (25.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIR 317
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 164 (62.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 106 (42.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 328
Score = 57 (25.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIR 317
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 164 (62.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T D K +F GDI+S K+V + G+S GYGFV
Sbjct: 33 ATDDSKTNL--IVNYLPQNM--TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
YS P A AI L G ++ + V + I++ NLYV L M+++ +
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEME 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 106 (42.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 70 (29.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 329
Score = 57 (25.1 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 291 NLSPEADESVLWQLFGPFGAVTNVKVIR 318
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 170 (64.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/134 (33%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS+FG+I TS
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQFGRIITSR 184
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 185 ILVDQVTGVSRGVG 198
Score = 111 (44.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS+FG I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 75 LQG 77
L G
Sbjct: 215 LNG 217
Score = 77 (32.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG +T++ + +D N KGFG
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFG 349
Score = 50 (22.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 311 NLAPDADENVLWQMFGPFGAVTNVKVIR 338
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 170 (64.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/135 (33%), Positives = 69/135 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIE 73
N V L + +L +F G+I+S K+V + EG+S GYGFV Y P+ A AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 74 KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TS 132
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 133 LVISKDANGTSKGFG 147
++ G S+G G
Sbjct: 183 RILVDQVTGVSRGVG 197
Score = 107 (42.7 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213
Query: 75 LQG 77
L G
Sbjct: 214 LNG 216
Score = 78 (32.5 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 350
Score = 50 (22.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 312 NLAPDADESILWQMFGPFGAVTNVKVIR 339
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 165 (63.1 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGISRGVG 169
Score = 106 (42.4 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 78 (32.5 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 307
Score = 50 (22.7 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 269 NLAPDADESILWQMFGPFGAVTNVKVIR 296
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 163 (62.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 105 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 160
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 161 ILVDQVTGVSRGVG 174
Score = 107 (42.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 75 LQG 77
L G
Sbjct: 191 LNG 193
Score = 73 (30.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 312
Score = 52 (23.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 274 NLSPDSDESVLWQLFGPFGAVNNVKVIR 301
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 165 (63.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGISRGVG 169
Score = 106 (42.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 78 (32.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Score = 50 (22.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIR 309
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 165 (63.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGISRGVG 169
Score = 106 (42.4 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 78 (32.5 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 321
Score = 50 (22.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 283 NLAPDADESILWQMFGPFGAVTNVKVIR 310
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 86 YVGPFIRRADRIQEGSSFNNLY-VKNLDDDMT 116
Y GP ++A R + + N Y VK+ MT
Sbjct: 226 YPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMT 257
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 162 (62.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L +MT++ + + FS FG+I
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRNMTQKDVEDMFSRFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 90 (36.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L + + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITSFNG 169
Score = 77 (32.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 166 (63.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L ++ +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 128 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 184 ILVDQVTGMSRGVG 197
Score = 108 (43.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKG 213
Query: 75 LQG 77
L G
Sbjct: 214 LNG 216
Score = 78 (32.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 349
Score = 50 (22.7 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 311 NLAPDADESILWQMFGPFGAVTNVKVIR 338
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 163 (62.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 163 ILVDQVTGVSRGVG 176
Score = 107 (42.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 75 LQG 77
L G
Sbjct: 193 LNG 195
Score = 73 (30.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 327
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 289 NLSPDSDESVLWQLFGPFGAVNNVKVIR 316
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 163 (62.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 163 ILVDQVTGVSRGVG 176
Score = 107 (42.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 75 LQG 77
L G
Sbjct: 193 LNG 195
Score = 73 (30.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 327
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 289 NLSPDSDESVLWQLFGPFGAVNNVKVIR 316
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 163 (62.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 168 ILVDQVTGVSRGVG 181
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 75 LQG 77
L G
Sbjct: 198 LNG 200
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 332
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 294 NLSPDSDESVLWQLFGPFGAVNNVKVIR 321
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 163 (62.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 168 ILVDQVTGVSRGVG 181
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 75 LQG 77
L G
Sbjct: 198 LNG 200
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 332
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 294 NLSPDSDESVLWQLFGPFGAVNNVKVIR 321
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 163 (62.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGVSRGVG 169
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 296 NLSPDSDESVLWQLFGPFGAVNNVKVIR 323
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 163 (62.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 156 ILVDQVTGVSRGVG 169
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 296 NLSPDSDESVLWQLFGPFGAVNNVKVIR 323
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 78 ISTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITSFNG 169
Score = 77 (32.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 78 ISTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITSFNG 169
Score = 77 (32.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 47/151 (31%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+I+S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSPFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 92 (37.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITSFNG 169
Score = 77 (32.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRSMTQKDVEDMFSRFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 91 (37.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L ++ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITNFNG 169
Score = 77 (32.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 163 (62.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 163 ILVDQVTGVSRGVG 176
Score = 107 (42.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 75 LQG 77
L G
Sbjct: 193 LNG 195
Score = 73 (30.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Score = 52 (23.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 303 NLSPDSDESVLWQLFGPFGAVNNVKVIR 330
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 163 (62.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 162
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 163 ILVDQVTGVSRGVG 176
Score = 107 (42.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 75 LQG 77
L G
Sbjct: 193 LNG 195
Score = 73 (30.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Score = 52 (23.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 303 NLSPDSDESVLWQLFGPFGAVNNVKVIR 330
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 165 (63.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 128 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 184 ILVDQVTGISRGVG 197
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 75 LQG 77
L G
Sbjct: 214 LNG 216
Score = 78 (32.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 348
Score = 50 (22.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 310 NLAPDADESILWQMFGPFGAVTNVKVIR 337
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 163 (62.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 123 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 178
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 179 ILVDQVTGVSRGVG 192
Score = 107 (42.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 75 LQG 77
L G
Sbjct: 209 LNG 211
Score = 73 (30.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 343
Score = 52 (23.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 305 NLSPDSDESVLWQLFGPFGAVNNVKVIR 332
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 165 (63.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 184
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 185 ILVDQVTGISRGVG 198
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 75 LQG 77
L G
Sbjct: 215 LNG 217
Score = 78 (32.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 350
Score = 50 (22.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 312 NLAPDADESILWQMFGPFGAVTNVKVIR 339
Score = 39 (18.8 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 86 YVGPFIRRADRIQEGSSFNNLY-VKNLDDDMT 116
Y GP ++A R + + N Y VK+ MT
Sbjct: 255 YPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMT 286
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 165 (63.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + +L +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 184
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 185 ILVDQVTGISRGVG 198
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 75 LQG 77
L G
Sbjct: 215 LNG 217
Score = 78 (32.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 349
Score = 50 (22.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 311 NLAPDADESILWQMFGPFGAVTNVKVIR 338
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 163 (62.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 111 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 166
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 167 ILVDQVTGVSRGVG 180
Score = 107 (42.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 75 LQG 77
L G
Sbjct: 197 LNG 199
Score = 73 (30.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 345
Score = 52 (23.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 307 NLSPDSDESVLWQLFGPFGAVNNVKVIR 334
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 163 (62.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 168 ILVDQVTGVSRGVG 181
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 75 LQG 77
L G
Sbjct: 198 LNG 200
Score = 73 (30.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Score = 52 (23.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 308 NLSPDSDESVLWQLFGPFGAVNNVKVIR 335
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 163 (62.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 167
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 168 ILVDQVTGVSRGVG 181
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 75 LQG 77
L G
Sbjct: 198 LNG 200
Score = 73 (30.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Score = 52 (23.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 308 NLSPDSDESVLWQLFGPFGAVNNVKVIR 335
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 163 (62.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T + LK +F G+I+S K+V + G+S GYGFV
Sbjct: 33 NTEDSKTNL--IDNYLPQNM--TQEELK--SLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y P+ A AI L G ++ + V + I++ NLYV L MT++ L
Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELE 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
Score = 106 (42.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 78 (32.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIR 309
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 163 (62.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+T +S+ L I N +N+ T + LK +F G+I+S K+V + G+S GYGFV
Sbjct: 33 NTEDSKTNL--IDNYLPQNM--TQEELK--SLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y P+ A AI L G ++ + V + I++ NLYV L MT++ L
Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELE 142
Query: 122 EKFSEFGKI-TSLVISKDANGTSKGFG 147
+ FS++G+I TS ++ G S+G G
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
Score = 106 (42.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 75 LQG 77
L G
Sbjct: 186 LNG 188
Score = 78 (32.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIR 309
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 160 (61.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 134 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 159
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 95 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAITSFNG 169
Score = 77 (32.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 160 (61.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 86 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRII 141
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 142 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 167
Score = 95 (38.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 103 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 160
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 161 RFDKRSEAEEAITSFNG 177
Score = 77 (32.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 296
Score = 51 (23.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 258 NLGQDADEGILWQMFGPFGAVTNVKVIR 285
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 160 (61.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y T + A A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V + R + + + + NLY+ L MT++ + + FS FG+I
Sbjct: 105 INTLNGLRLQSKTIKVS-YARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRII 160
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S V+ G S+G V ++ R K++E
Sbjct: 161 NSRVLVDQTTGLSRG----VAFI-RFDKRSE 186
Score = 95 (38.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +FS+FG I +S+V+V Q G S+G F+
Sbjct: 122 YARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 179
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 180 RFDKRSEAEEAITSFNG 196
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 315
Score = 51 (23.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 277 NLGQDADEGILWQMFGPFGAVTNVKVIR 304
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 161 (61.7 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P+ A AI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V + I++ NLYV L MT++ L + FS++G+I TS
Sbjct: 149 LNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSR 204
Query: 134 VISKDANGTSKGFG 147
++ G S+G G
Sbjct: 205 ILVDQVTGGSRGVG 218
Score = 107 (42.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 75 LQG 77
L G
Sbjct: 235 LNG 237
Score = 73 (30.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + ++ + +D N KGFG
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 369
Score = 52 (23.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ + DE L Q F G +++VK++R
Sbjct: 331 NLSPDSDESVLWQLFGPFGAVNNVKVIR 358
Score = 40 (19.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 22/89 (24%), Positives = 34/89 (38%)
Query: 262 QVYQAPDFRHGGMIPNGXXXXXXXXXXXMA-------P---DSVTQYRGAMMNGHANFPM 311
Q+YQ+P+ R+ G + + MA P DS+T G + GH
Sbjct: 266 QLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDSMTSLVGMNIPGHTGTGW 325
Query: 312 PLMLSNLQKPSYNYPISQPRAGQAAANNL 340
+ + NL S + Q A NN+
Sbjct: 326 CIFVYNLSPDSDESVLWQLFGPFGAVNNV 354
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 163 (62.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 47/139 (33%), Positives = 70/139 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L T+ ++ +F FG+++S K++ + G+S GYGFV Y E A AI
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSL 133
L G ++ + V R + +G+ NLYV L +MT+ L FS +GKI TS
Sbjct: 171 LNGLRLQNKTIKVS-IARPSSESIKGA---NLYVSGLPKNMTQSDLESLFSPYGKIITSR 226
Query: 134 VI-----SKDANGTSKGFG 147
++ + A G SKG G
Sbjct: 227 ILCDNITGEHAAGLSKGVG 245
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 30/71 (42%), Positives = 39/71 (54%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV NLA + L Q+F FG +QS KV+ Q K KG+GFV + E A+ AI+ L
Sbjct: 364 FVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLN 423
Query: 77 GATVERMELYV 87
G T+ L V
Sbjct: 424 GYTLGNRVLQV 434
Score = 90 (36.7 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQE---GKSKGYG 58
P+SE+ + G N +V L + L +FS +G I +S+++ ++ E G SKG G
Sbjct: 188 PSSES-IKG-ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVG 245
Query: 59 FVQYSTPESALDAIEKLQGAT 79
F+++ A AI++L G T
Sbjct: 246 FIRFDQRFEADRAIKELNGTT 266
Score = 70 (29.7 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E +L + F FG + S+ + +D KGFG
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG 405
Score = 48 (22.0 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + +E L Q F G + SVK++R
Sbjct: 367 NLAPDTEENVLWQLFGPFGAVQSVKVIR 394
Score = 48 (22.0 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 25/94 (26%), Positives = 36/94 (38%)
Query: 303 MNGHA--NFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNH--RAAASNENLSSML 358
+NG N P+ + PS N QP A A N G AA+ ++
Sbjct: 262 LNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAA 321
Query: 359 VATSPDE-RKDILGQRLYPLVKKLKVITHIFVKG 391
A P+ R + R PL L IT+ ++G
Sbjct: 322 AAIHPNAGRYSSVISRYSPLTSDL--ITNGMIQG 353
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 133 (51.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID +L + FS FG I S+KV++ + G SK +GF+ +S+ E A
Sbjct: 24 RYQGV-NLYVKNLDDSIDE-RLRKQFSPFGTITSAKVMM-EGGHSKRFGFICFSSHEEAF 80
Query: 70 DAIEKLQGATVERMELYV 87
A+ ++ G V LYV
Sbjct: 81 KAVMEMNGKIVATKPLYV 98
Score = 100 (40.3 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 157 QKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK E + L+ +FE+M++++ LY KN++D +DE L++ FS GTI+S K+M
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSIDE-RLRKQFSPFGTITSAKVM 59
Query: 210 RTDRGISK 217
+ G SK
Sbjct: 60 M-EGGHSK 66
Score = 94 (38.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLYVKNLDD + E L ++FS FG ITS + + G SK FG
Sbjct: 29 NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKRFG 69
Score = 75 (31.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 347 AAASNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
AA E+L+ SML + P E+K +LG+ L+PL++ L
Sbjct: 240 AAGGQEHLTASMLASAPPQEQKQMLGEWLFPLIQVL 275
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 146 (56.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 54/187 (28%), Positives = 90/187 (48%)
Query: 7 SEARLSG--IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYS 63
S A L G IG N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS
Sbjct: 2 SAASLCGVLIGEX---NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 56
Query: 64 TPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILV 121
E A DA V+ + + + R D + G+ L+V L D+ E L+
Sbjct: 57 NVEEA-DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLI 115
Query: 122 EKFSEFGKITSL-VISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL 180
E FS+FG + +I+ +G +GFG +Y ++ A++ A+++ F ++ R E+
Sbjct: 116 EHFSQFGAVEKAEIIADKQSGKKRGFG--FVYF-QSHDAADKAAVVK--FHPIQGHRVEV 170
Query: 181 YKNINDE 187
K + E
Sbjct: 171 KKAVPKE 177
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 161 (61.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE--GKSKGYGFVQYSTPESALDAI 72
G FV L T N L FS FG+++ S V+ + E KS+G+GFV + P S +D +
Sbjct: 106 GKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDP-SVIDEV 164
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
L ++E + + I + + +E L+V L +T + FSEFG+I+
Sbjct: 165 I-LINHSIEGKNVEIRRAIPKEEMTEEPKK-QKLFVGGLPKHITSDDFNNYFSEFGEISE 222
Query: 133 LVISKDANGTSKGFG 147
+ + NGT KGFG
Sbjct: 223 YNLLTEKNGTIKGFG 237
Score = 53 (23.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 306 HANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASN 351
H + P P +LS Q P + I QP Q + ++L NGN A+SN
Sbjct: 304 HMHSP-PQILS--QYPPKSVIIVQPHHHQLSPSHLNNGNQ--ASSN 344
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 253 HPTLYQRALQVYQAP 267
HP ++Q ++YQ P
Sbjct: 390 HPPIFQDGYEIYQHP 404
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 152 (58.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 47/160 (29%), Positives = 79/160 (49%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI- 130
I L G ++ + V ++ I++ NLY+ L MT++ + + F FG+I
Sbjct: 78 INTLNGLRLQSKTIKVSVARPSSESIKDA----NLYISGLPRTMTQKDVEDMFLPFGRII 133
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQF 170
S V+ A G S+G V ++ R K++E + + A F
Sbjct: 134 NSRVLVDQATGLSRG----VAFI-RFDKRSEAEEAI-ASF 167
Score = 85 (35.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYS 63
P+SE+ N ++ L T+ + +F FG I +S+V+V Q G S+G F+++
Sbjct: 98 PSSESIKDA--NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFD 155
Query: 64 TPESALDAIEKLQG 77
A +AI G
Sbjct: 156 KRSEAEEAIASFNG 169
Score = 77 (32.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 167 (63.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 42/151 (27%), Positives = 77/151 (50%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + + L QIF G +Q+ K++ + K YGFV+Y P +A A++ L G
Sbjct: 88 YVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLNG 147
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
V + E+ V + A + + N+ ++V +L +++ +E+L + FS FG ++ +
Sbjct: 148 RRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARV 207
Query: 136 SKDAN-GTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA + KA+
Sbjct: 208 MWDMKTGRSRGYG----FVAFRDRSDAEKAL 234
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 49/151 (32%), Positives = 79/151 (52%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
+ NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +A+
Sbjct: 115 LSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 171
Query: 79 TVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
+E R+EL GP R + + S L+VK L +D TEE L E F G + + +
Sbjct: 172 EIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD--GSVRARI 225
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++ G+SKGFG V + + KA ++A+
Sbjct: 226 VTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 255
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 159 (61.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 52/157 (33%), Positives = 82/157 (52%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
P+SEA ++ N+ T+ N +L ++ + G ++ +V+ + G+S+ +GF
Sbjct: 70 PSSEAAR----RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 64 TPESALDAIEKLQGATVERMELYVG----PFIRRADR--IQ-EGSSFNN----LYVKNLD 112
+ E A +EKL G TVE E+ V P D +Q E S+F + +YV NL
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA 185
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSK--GFG 147
+T+E+L FSE GK+ S +S+ GTSK GFG
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSR-VPGTSKSTGFG 221
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 169 (64.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 53/160 (33%), Positives = 86/160 (53%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q+GKSKGY F+++++ E A +
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQQGKSKGYAFIEFASFEDAKE 538
Query: 71 AIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A+ +++G T+ R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 539 ALNSCNKMEIEGRTI-RLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFE 593
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 594 --GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 630
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/134 (29%), Positives = 70/134 (52%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL+ I +L ++F +I+ +VSQ+GKSKG ++++ + A +E+ QGA
Sbjct: 399 KNLSFNITEDELKEVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 454
Query: 80 VERMEL---YVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITS 132
++ + Y G +R +R + S+++ L + NL TEE L E F K T
Sbjct: 455 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATF 511
Query: 133 LVISKDANGTSKGF 146
+ + ++ G SKG+
Sbjct: 512 IKVPQNQQGKSKGY 525
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 161 (61.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 50/150 (33%), Positives = 74/150 (49%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYS 63
P EA+L FV NL +D+ L +F + G ++ S+V+ +++ +S+G+GFV S
Sbjct: 109 PPEEAKL------FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMS 162
Query: 64 TPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-----GSSFNNLYVKNLDDDMTEE 118
T E A A+EK V L V R R + ++F +YV NL D+
Sbjct: 163 TVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR-IYVGNLPWDVDSG 221
Query: 119 ILVEKFSEFGKITSL-VISKDANGTSKGFG 147
L FSE GK+ V+S G S+GFG
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFG 251
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 163 (62.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NLA + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 136 SGESKTLVLSNLAYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 192
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L ++ TEE L E F
Sbjct: 193 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEETTEETLKESFD- 247
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 248 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 284
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 52 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 107
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 108 IDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE---KAT 164
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 165 FIKVPQNQNGKSKGY 179
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 150 (57.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 49/161 (30%), Positives = 80/161 (49%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDA 71
G N V L + +L +FS G+++S+K++ + G S GYGFV Y + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 72 IEKLQGATVERMELYVGPFIR-RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
I L G ++ + V F R ++ I++ NLY+ L MT++ + + F FG I
Sbjct: 78 INTLNGLRLQSKTIKVS-FARPSSETIKDA----NLYISGLPRTMTQKDVEDMFLPFGHI 132
Query: 131 -TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQF 170
S V+ A G S+G V ++ R K++E + + A F
Sbjct: 133 INSRVLVDQATGLSRG----VAFI-RFDKRSEAEEAI-ASF 167
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFV 60
++ P+SE N ++ L T+ + +F FG I +S+V+V Q G S+G F+
Sbjct: 95 FARPSSETIKDA--NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFI 152
Query: 61 QYSTPESALDAIEKLQG 77
++ A +AI G
Sbjct: 153 RFDKRSEAEEAIASFNG 169
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
+++ NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Score = 51 (23.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIR 277
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 149 (57.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 41/137 (29%), Positives = 73/137 (53%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
++ +L +D LH FS+ G++ S K++ + Q G+S+ YGFV+++T +A ++
Sbjct: 87 WIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYN 146
Query: 77 GATVERME----LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF-SEFGKIT 131
G + E L F R + GS F+ ++V +L D+T+ +L + F S + +
Sbjct: 147 GTMMPNTEQPFRLNWAGFSTGEKRAETGSDFS-IFVGDLASDVTDTMLRDTFASRYPSLK 205
Query: 132 SLVISKDAN-GTSKGFG 147
+ DAN G SKG+G
Sbjct: 206 GAKVVVDANTGHSKGYG 222
Score = 101 (40.6 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIF-SKFGDIQSSKVVV-SQEGKSKGYGF 59
+ST A + FV +LAS + + L F S++ ++ +KVVV + G SKGYGF
Sbjct: 164 FSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGF 223
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVG 88
V++ A+ ++ G + +G
Sbjct: 224 VRFGDESERSRAMTEMNGVYCSSRAMRIG 252
Score = 57 (25.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKI 208
++ EV + EL+Q F+Q G + SVKI
Sbjct: 302 LDSEVTDEELRQSFNQFGEVVSVKI 326
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 150 (57.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 44/162 (27%), Positives = 81/162 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV------VSQE---GKSKGYGFVQYSTPE 66
N + L + +L +FS G+++S+K++ +S G S GYGFV Y P
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPS 116
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A AI L G ++ + V +D I++ NLY+ L MT++ + + F++
Sbjct: 117 DAERAINTLNGLRLQSKTIKVSYARPSSDGIKDA----NLYISGLPKTMTQKNVEDMFTQ 172
Query: 127 FGKI-TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
+G+I S ++ A+G S+G V ++ R K++E + ++
Sbjct: 173 YGRIINSRILVDQASGLSRG----VAFI-RFDKRSEAEEAIK 209
Score = 93 (37.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N ++ L T+ + +F+++G I +S+++V Q G S+G F+++ A +AI+
Sbjct: 151 NLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKD 210
Query: 75 LQGA 78
L G+
Sbjct: 211 LNGS 214
Score = 79 (32.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N + KGFG
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFG 330
Score = 53 (23.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
N+ + DE L Q F G +++VK++R D SK
Sbjct: 292 NLGQDADEGILWQMFGPFGAVTNVKVIR-DFNTSK 325
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 146 (56.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 41/135 (30%), Positives = 68/135 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L + + +F G+I+S K+V + G+S GYGFV Y P A AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TS- 132
L G ++ + V + I++ NLYV L M+++ + + FS++G+I TS
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKDMEQLFSQYGRIITSR 154
Query: 133 LVISKDANGTSKGFG 147
+++ + G S+G G
Sbjct: 155 ILVDQVTAGISRGVG 169
Score = 104 (41.7 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIE 73
N +V L T+ + Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184
Query: 74 KLQG 77
L G
Sbjct: 185 GLNG 188
Score = 70 (29.7 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
++V NL + E +L + F FG +T++ + +D KGFG
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 320
Score = 57 (25.1 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N++ E DE L Q F G +++VK++R
Sbjct: 282 NLSPEADESVLWQLFGPFGAVTNVKVIR 309
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 166 (63.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 397 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 453
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 454 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 508
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 509 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 545
Score = 128 (50.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 59/220 (26%), Positives = 106/220 (48%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 320 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 375
Query: 80 VERMELYVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITSLV 134
++ Y G + D R + S+++ L + NL TEE L E F K T +
Sbjct: 376 ID----YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIK 428
Query: 135 ISKDANGTSKGFG---------SKVLYVARAQKKAERKAI-LRAQFER----MRKERAE- 179
+ ++ NG SKG+ +K + +++ E +AI L Q R R + ++
Sbjct: 429 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT 488
Query: 180 LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L+ K ++++ E LK+ F G+I + + + G SKG
Sbjct: 489 LFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG 526
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 459 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 513
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 514 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 550
Score = 128 (50.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 59/220 (26%), Positives = 106/220 (48%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 325 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 380
Query: 80 VERMELYVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITSLV 134
++ Y G + D R + S+++ L + NL TEE L E F K T +
Sbjct: 381 ID----YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIK 433
Query: 135 ISKDANGTSKGFG---------SKVLYVARAQKKAERKAI-LRAQFER----MRKERAE- 179
+ ++ NG SKG+ +K + +++ E +AI L Q R R + ++
Sbjct: 434 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT 493
Query: 180 LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L+ K ++++ E LK+ F G+I + + + G SKG
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG 531
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 459 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 513
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 514 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 550
Score = 128 (50.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 59/220 (26%), Positives = 106/220 (48%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 325 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 380
Query: 80 VERMELYVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITSLV 134
++ Y G + D R + S+++ L + NL TEE L E F K T +
Sbjct: 381 ID----YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIK 433
Query: 135 ISKDANGTSKGFG---------SKVLYVARAQKKAERKAI-LRAQFER----MRKERAE- 179
+ ++ NG SKG+ +K + +++ E +AI L Q R R + ++
Sbjct: 434 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT 493
Query: 180 LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L+ K ++++ E LK+ F G+I + + + G SKG
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG 531
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 163 (62.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 48/156 (30%), Positives = 80/156 (51%)
Query: 2 WST-PNSEARLSGIG---NAFVKNLASTIDNLKLHQIFS-KFGDIQSSKVVV-SQEGKSK 55
W++ E RL G + FV +LA + + LH+ FS K+ ++++KVV+ + G+SK
Sbjct: 182 WASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSK 241
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI-RRADRIQ--------------EG 100
GYGFV++ A+ ++ G + +GP R+ + Q EG
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEG 301
Query: 101 SSFNN-LYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ N ++V LD +T+E L + FSEFG+I S+ I
Sbjct: 302 DTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
Score = 126 (49.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 39/139 (28%), Positives = 73/139 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGD--IQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
+V +L + +D L+ F+ + I S KV+ ++ G S+GYGFV++ + + A +++
Sbjct: 106 WVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQE 165
Query: 75 LQGA----TVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE-FGK 129
GA T + L F R++ +++V +L D+++ +L E FSE +
Sbjct: 166 FNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPS 225
Query: 130 ITSLVISKDAN-GTSKGFG 147
+ + + DAN G SKG+G
Sbjct: 226 VKAAKVVLDANTGRSKGYG 244
Score = 52 (23.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKI 208
++ V + +LKQ FS+ G I SVKI
Sbjct: 313 LDSSVTDEDLKQPFSEFGEIVSVKI 337
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 166 (63.5 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 492 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 548
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 549 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 603
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 604 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 640
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 408 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 463
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 464 IDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 520
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 521 HIKVPQNQNGKSKGY 535
>WB|WBGene00006331 [details] [associations]
symbol:sup-26 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
Length = 476
Score = 166 (63.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 50/167 (29%), Positives = 89/167 (53%)
Query: 16 NAFVKNLA-STIDNLKLHQIFSKFGDIQSSKVVVSQEGKS-KGYGFVQYSTPESALDAIE 73
N +++ L +T D+L L ++ SK+G+I S+K ++ + + KGYGFV + +P++A A++
Sbjct: 149 NLYIRGLMPNTNDDL-LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 207
Query: 74 KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
G E ++ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 208 ---GLNTEGVQAQM------AKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVIST 258
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKE 176
I + + S+G G AR K + + I+ A +F+ M KE
Sbjct: 259 RILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKE 300
Score = 37 (18.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 303 MNGHANFPMPLMLSNL 318
+NG N PL+LS+L
Sbjct: 406 INGQDNVFTPLLLSSL 421
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 163 (62.4 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 40/133 (30%), Positives = 65/133 (48%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L + +++G I S+K ++ + K KGYGFV + P A A++
Sbjct: 230 NLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKG 289
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
LQ V+ VG ++ IQ+ NLY+ NL E L ++FG++ S
Sbjct: 290 LQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTR 349
Query: 135 ISKDANGTSKGFG 147
I +D SKG G
Sbjct: 350 ILRDQQMNSKGVG 362
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 163 (62.4 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 538
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 539 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 593
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 594 -GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 630
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A E+ QG
Sbjct: 398 KNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 454 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 510
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 511 FIKVPQNQNGKSKGY 525
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 163 (62.4 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 539
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 540 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 594
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 595 -GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 631
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A E+ QG
Sbjct: 399 KNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 455 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 511
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 512 FIKVPQNQNGKSKGY 526
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 163 (62.4 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 484 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 540
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 541 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 595
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 596 -GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 632
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A E+ QG
Sbjct: 400 KNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 455
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 456 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 512
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 513 FIKVPQNQNGKSKGY 527
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 163 (62.4 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 487 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 543
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 544 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFD- 598
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 599 -GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 635
Score = 120 (47.3 bits), Expect = 0.00053, P = 0.00053
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A E+ QG
Sbjct: 403 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 458
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 459 IDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KAT 515
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 516 FIKVPQNQNGKSKGY 530
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 163 (62.4 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NLA + L ++F K I KV +Q GKSKGY F+++++ E A +
Sbjct: 495 SGESKTLVLSNLAYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 551
Query: 71 AIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A+ +E R+EL GP R + + S L+VK L ++ TEE L E F
Sbjct: 552 ALNSCNKREIEGRAIRLELQ-GP--RGSPNARSQPS-KTLFVKGLSEETTEETLKESFD- 606
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I + +++ G+SKGFG V + + KA ++A+
Sbjct: 607 -GSIRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 643
Score = 121 (47.7 bits), Expect = 0.00041, P = 0.00041
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL + +L ++F +I+ +VS++GKSKG ++++ T A +E+ QG
Sbjct: 411 KNLPYKVTQDELKEVFEDAVEIR----LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 466
Query: 80 VERMEL---YVGPFIRRAD-RIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKIT 131
++ + Y G + D R + S+++ L + NL TEE L E F K T
Sbjct: 467 IDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE---KAT 523
Query: 132 SLVISKDANGTSKGF 146
+ + ++ NG SKG+
Sbjct: 524 FIKVPQNQNGKSKGY 538
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 138 (53.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 42/113 (37%), Positives = 58/113 (51%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQ 61
ST S + + GN F+ L +T + L IFS FG+I S +V+V G S+G+GFV+
Sbjct: 88 STSTS-SNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVK 146
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
+ SA AI + GA VE L V R A+ ++ NN N DDD
Sbjct: 147 FKDVASAQYAINSMNGAKVENKTLLV----RFANSDPNSNNTNNSNNNN-DDD 194
Score = 112 (44.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 3 STPN-SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFV 60
+T N E ++S N F++ L D +L ++FS +G++ SK+++ S+G G V
Sbjct: 208 NTNNIDEQKISN--NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLV 265
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
+Y +SA++A++ L G ++ E + +R AD E
Sbjct: 266 RYIDTQSAINAVKSLNGFILQDPEKPL--IVRFADNEDE 302
Score = 74 (31.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
G+ NLYV NL D + +L FS G I S+ I +D +G+G
Sbjct: 378 GTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYG 426
Score = 65 (27.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + D+ L + FS CG I+SVKI+R
Sbjct: 388 NLPSDADDSLLYRLFSPCGAIASVKIVR 415
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 158 (60.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 41/132 (31%), Positives = 69/132 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKS-KGYGFVQYSTPESALDAIEKLQ 76
+V NL + ++ ++ G + + + + + ++ +GYGFV++ TPESA A L
Sbjct: 15 YVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARALN 74
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSLVI 135
G V + V AD+ + L+V NLD + E+IL + FS FG+ +T +
Sbjct: 75 GIRVFGKVIRVNK--ASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNV 132
Query: 136 SKDANGTSKGFG 147
+DAN SKG+G
Sbjct: 133 VRDANNISKGYG 144
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 302 MMNGHANFPMPLMLSNLQKPSYNYP 326
MM GHA P P L PS P
Sbjct: 305 MMGGHALPPAPSGLPARPPPSMGGP 329
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 128 (50.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAI 72
I N FVK L +L+ +F +FG+I ++KV+V+ + G S GYGFV++ PE+A +AI
Sbjct: 20 ICNVFVKYLPCNFSEKELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAI 79
Query: 73 EKL 75
+ +
Sbjct: 80 KNM 82
Score = 76 (31.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG----SKVLY 152
Q+ N LYV+ L +T+ IL FS+FG++ + DA+ G SK G S + Y
Sbjct: 137 QQRDPSNTLYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFSNIHY 196
Query: 153 VARAQKKAERKAIL 166
A + IL
Sbjct: 197 STNALQSMSGSLIL 210
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 314 MLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKD 368
+L L KPS + P+S P G NN NG + N + + ++++D
Sbjct: 92 LLCKLSKPSNSPPVS-PFVG----NN-GNGGISCCVPDSNGGATTSPSQTEQQRD 140
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 120 LVEKFSEFGKITSLVISKDANGT-SKGFGS--KVLYVARAQKKAERKAILRAQFERMR 174
L++ FS++G + S+ I+ + N +K F S AQ+ + + I QF R++
Sbjct: 459 LIQIFSKYGDLKSINININPNSNKTKCFISFNNAENAILAQQNLDGQKIQGNQFIRVK 516
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 161 (61.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/160 (32%), Positives = 84/160 (52%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV + GKSKGY F+++++ E A +
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKE 541
Query: 71 AIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A+ +++G T+ R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 542 ALNSCNKMEIEGRTI-RLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFE 596
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 597 --GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 633
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL+ I +L ++F +I+ +VSQ+G+SKG ++++ + A +E+ QGA
Sbjct: 402 KNLSFNITEDELKEVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAE 457
Query: 80 VERMEL---YVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITS 132
++ + Y G +R +R + S+++ L + NL TEE L E F K T
Sbjct: 458 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATF 514
Query: 133 LVISKDANGTSKGF 146
+ + ++ +G SKG+
Sbjct: 515 IKVPQNPHGKSKGY 528
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 161 (61.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/160 (32%), Positives = 84/160 (52%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV + GKSKGY F+++++ E A +
Sbjct: 486 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKE 542
Query: 71 AIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A+ +++G T+ R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 543 ALNSCNKMEIEGRTI-RLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFE 597
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G + + +++ G+SKGFG V + + KA ++A+
Sbjct: 598 --GSVRARIVTDRETGSSKGFGF-VDFNSEEDAKAAKEAM 634
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL+ I +L ++F +I+ +VSQ+G+SKG ++++ + A +E+ QGA
Sbjct: 403 KNLSFNITEDELKEVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAE 458
Query: 80 VERMEL---YVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITS 132
++ + Y G +R +R + S+++ L + NL TEE L E F K T
Sbjct: 459 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATF 515
Query: 133 LVISKDANGTSKGF 146
+ + ++ +G SKG+
Sbjct: 516 IKVPQNPHGKSKGY 529
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 49/181 (27%), Positives = 86/181 (47%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
S P E + +GI FV+NL N L + FS++G++ +KV G SKG+GF+ +
Sbjct: 65 SLPRQE-QPNGI---FVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYF 120
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRA-----DRI--QEGSSFNNLYVKNLDDDM 115
TPE+A A E+ + V P I+ + D + +E + ++LY+ N+ +
Sbjct: 121 ETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSSLYIGNIPYES 180
Query: 116 TEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAERKAILRAQFERM 173
T+ L F + + + I+ D + G +GF + V A K E+ ++ +
Sbjct: 181 TDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTL 240
Query: 174 R 174
R
Sbjct: 241 R 241
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 34/131 (25%), Positives = 68/131 (51%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V NL+ + + Q+FS+ G ++ K+++ G Y FV++ A A+ + G
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNG 60
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ E+ V + + ++ S+ +++V +L ++T E + F+ FG+I+ + K
Sbjct: 61 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 120
Query: 138 D-ANGTSKGFG 147
D A G SKG+G
Sbjct: 121 DMATGKSKGYG 131
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 154 (59.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 127 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 186
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 187 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 246
Query: 142 TSKGFG 147
KG+G
Sbjct: 247 KHKGYG 252
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 154 (59.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 143 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 202
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 203 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 262
Query: 142 TSKGFG 147
KG+G
Sbjct: 263 KHKGYG 268
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 157 (60.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 52/189 (27%), Positives = 91/189 (48%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N + L + + +L+ +FS G I + K++ + G S GYGFV Y T + DAI+K
Sbjct: 94 NLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK 153
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G V L V I++ NLYV NL ++ +++L FS +G I
Sbjct: 154 LNGFYVRNKRLKVSYARPGGQSIKD----TNLYVINLSRNINDDMLDRIFSPYGLIVQRN 209
Query: 135 ISKDA-NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE-LYKNINDEVDEIE 192
I +D G +G V +V R K+ E + ++A + + ++ ++ + +E + +
Sbjct: 210 ILRDKLTGRPRG----VAFV-RYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAK 264
Query: 193 LKQYFSQCG 201
Q+ +Q G
Sbjct: 265 AAQFMAQIG 273
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 154 (59.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 102 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 162 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 221
Query: 142 TSKGFG 147
KG+G
Sbjct: 222 KHKGYG 227
Score = 40 (19.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 239 AKQGPGLASTIFPVH 253
A Q PG+ + FP H
Sbjct: 330 AAQAPGVITGAFPAH 344
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 120 (47.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE 73
G FV+NL+ + L ++FSKFG I + + + K SKG F+ Y PE+A+ A+
Sbjct: 361 GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALN 420
Query: 74 KLQGATVERMELYVGPF-IRRADRIQEGSSFNN 105
+ G + ++V P A + E NN
Sbjct: 421 DMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNN 453
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
VK L + + + + F KFG + +K++ ++GKS+ +GF+ +ST +SA +A+ L G
Sbjct: 8 VKQLPKHLTDKRFKEHFEKFGTVTDAKII-KKDGKSRLFGFIGFSTEQSAKNALS-LNGT 65
Query: 79 TVERMELYV 87
++ ++ V
Sbjct: 66 FIDTSKIVV 74
Score = 88 (36.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
Q + + +KNL + T + + + F+ +G+I S+ I K NG +GFG V ++ +
Sbjct: 789 QPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGF-VEFLTEEE 847
Query: 158 KKAERKAILRAQF--ERMRKERAELYKNINDEVDE 190
K +A+ + F + + AE KNI DE+ E
Sbjct: 848 AKNAMEALGNSHFYGRHLVLQYAEQDKNI-DELRE 881
Score = 71 (30.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGT-SKGFGSKVLYV 153
G S ++V+NL EE L + FS+FGKI+ + I D + SKG +LY+
Sbjct: 358 GES-GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAF-ILYL 410
Score = 60 (26.2 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 99 EGSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+GS +N L VKN+ E L E FS+FG+++ +V+S
Sbjct: 546 KGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLS 585
Score = 56 (24.8 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 98 QEGSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN 140
++G+ N +Y+KNL+ T E LV KF ++ I+ AN
Sbjct: 670 KKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKAN 714
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSV 206
R L KNI + E EL + FS+ G +S V
Sbjct: 550 RSNTVLLVKNIPFKTQEHELHELFSKFGELSRV 582
Score = 48 (22.0 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 180 LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ KN+ E E+++ F+ G I SV+I + G +G
Sbjct: 798 IIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRG 836
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 44/138 (31%), Positives = 71/138 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEK 74
+ FV +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y E A AIE+
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 195
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNN-----LYVKNLDDD----------MTEEI 119
+ G + R + R+ ++ S +N +Y + D+ +TE+
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 255
Query: 120 LVEKFSEFGKITSLVISK 137
+ + F+ FG+IT + I K
Sbjct: 256 IRQGFASFGRITEVRIFK 273
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 40/149 (26%), Positives = 76/149 (51%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V NL ST+ + +F++ G + +KV+ +G + Y FV++S A A++ +
Sbjct: 49 YVGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMNK 106
Query: 78 ATVERMELYVGPFI---RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
+ E+ V + ++ +I F+ ++V +L ++ + L E F FG ++
Sbjct: 107 RLLLDREMKVNWAVEPGQQQSKIDTTRHFH-VFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 135 ISKDANGT-SKGFGSKVLYVARAQKKAER 162
+ +D N T SKG+G V Y R ++AER
Sbjct: 166 VIRDTNTTKSKGYGF-VSYPKR--EEAER 191
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 156 (60.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 39/139 (28%), Positives = 75/139 (53%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEGKSKG--YGFVQYSTPESALDAIEKLQGATVERMELYVG 88
L QIF G + S K++ + SKG YGFV++ P +A A++ L G + + E+ V
Sbjct: 106 LKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVN 165
Query: 89 -PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF 146
+ ++ S+ +++V +L +++ +E+L++ FS FG ++ + D G S+G+
Sbjct: 166 WAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGY 225
Query: 147 GSKVLYVARAQKKAERKAI 165
G +VA ++ KA+
Sbjct: 226 G----FVAFRERADAEKAL 240
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 157 (60.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 12 SGIGNAFV-KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
SG V NL+ + L ++F K I KV + GKSKGY F+++++ E A +
Sbjct: 339 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKE 395
Query: 71 AIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A+ +++G T+ R+EL GP R + + S L+VK L +D TEE L E F
Sbjct: 396 ALNSCNKMEIEGRTI-RLELQ-GP--RGSPNARSQPS-KTLFVKGLSEDTTEETLKESFE 450
Query: 126 EFGKITSLVISKDANGTSKGFG 147
G + + +++ G+SKGFG
Sbjct: 451 --GSVRARIVTDRETGSSKGFG 470
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL+ I +L ++F +I+ +VSQ+G+SKG ++++ + A +E+ QGA
Sbjct: 256 KNLSFNITEDELKEVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAE 311
Query: 80 VERMEL---YVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKITS 132
++ + Y G +R +R + S+++ L + NL TEE L E F K T
Sbjct: 312 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATF 368
Query: 133 LVISKDANGTSKGF 146
+ + ++ +G SKG+
Sbjct: 369 IKVPQNPHGKSKGY 382
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 146 (56.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 48/148 (32%), Positives = 72/148 (48%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV--VSQ------------EGKSKGYGFVQ 61
N V L T+ ++ +FS G+I+S K++ SQ +G+S GYGFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y P+ A A+ L G ++ + V F R + +G+ NLYV L MT++ L
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPSSDAIKGA---NLYVSGLPKTMTQQELE 265
Query: 122 EKFSEFGKI-TSLVISKDANGT-SKGFG 147
F+ FG I TS ++ N T +KG G
Sbjct: 266 AIFAPFGAIITSRILQNAGNDTQTKGVG 293
Score = 105 (42.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV--VSQEGKSKGYGF 59
++ P+S+A + G N +V L T+ +L IF+ FG I +S+++ + ++KG GF
Sbjct: 237 FARPSSDA-IKG-ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGF 294
Query: 60 VQYSTPESALDAIEKLQGAT 79
+++ E A AI L G T
Sbjct: 295 IRFDKREEATRAIIALNGTT 314
Score = 60 (26.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
+++ NL + E L + F FG + S+ I KD KG+G
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYG 446
Score = 52 (23.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ E +E L Q F G + SVKI++
Sbjct: 408 NLAPETEEAALWQLFGPFGAVQSVKIVK 435
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 145 (56.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 37/115 (32%), Positives = 60/115 (52%)
Query: 34 IFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93
+F K+ + S +V+ + +S GYGFV Y P+ A AI L G ++ + V
Sbjct: 99 LFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 158
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI-TSLVISKDANGTSKGFG 147
+ I++ NLYV L MT++ L + FS++G+I TS ++ G S+G G
Sbjct: 159 SASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 209
Score = 106 (42.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ A +AI+
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 75 LQG 77
L G
Sbjct: 226 LNG 228
Score = 78 (32.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS-KGFG 147
++V NL D E IL + F FG +T++ + +D N KGFG
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 361
Score = 50 (22.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMR 210
N+ + DE L Q F G +++VK++R
Sbjct: 323 NLAPDADESILWQMFGPFGAVTNVKVIR 350
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 86 YVGPFIRRADRIQEGSSFNNLY-VKNLDDDMT 116
Y GP ++A R + + N Y VK+ MT
Sbjct: 266 YPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMT 297
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 154 (59.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 37 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 96
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 97 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 156
Query: 142 TSKGFG 147
KG+G
Sbjct: 157 KHKGYG 162
>UNIPROTKB|F1P990 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
RefSeq:XP_538236.2 ProteinModelPortal:F1P990
Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
Uniprot:F1P990
Length = 407
Score = 154 (59.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 3 STPNSEARLSGIG-----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKG 56
STPNS + +G N +++ L + L ++ +G I S+K ++ + K KG
Sbjct: 39 STPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKG 98
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
YGFV + +P +A A+ L+ + V+ + + QE NLY+ NL M
Sbjct: 99 YGFVDFDSPSAAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMD 147
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L FG++ S I +D +GTS+G G
Sbjct: 148 EQELEGMLKPFGQVISTRILRDTSGTSRGVG 178
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 49/157 (31%), Positives = 81/157 (51%)
Query: 2 WST-PNSEARLSGIG---NAFVKNLASTI-DNLKLHQIFS-KFGDIQSSKVVV-SQEGKS 54
W++ E RL G + FV +L+ + DNL LH+ FS K+ ++++KVV+ + G+S
Sbjct: 180 WASFSTGEKRLENNGPDLSIFVGDLSPDVSDNL-LHETFSEKYPSVKAAKVVLDANTGRS 238
Query: 55 KGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI-RRADRIQ--------------E 99
KGYGFV++ A+ ++ G + +GP R+ + Q E
Sbjct: 239 KGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPE 298
Query: 100 GSSFNN-LYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
G N ++V LD +T+E L + F+EFG+I S+ I
Sbjct: 299 GDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 40/140 (28%), Positives = 72/140 (51%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGD---IQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIE 73
+V +L +D L+ F+ GD I S KV+ ++ G S+GYGFV++ + + A +
Sbjct: 104 WVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 74 KLQGATVERME----LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE-FG 128
+ G T+ + L F R++ +++V +L D+++ +L E FSE +
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 129 KITSLVISKDAN-GTSKGFG 147
+ + + DAN G SKG+G
Sbjct: 223 SVKAAKVVLDANTGRSKGYG 242
Score = 49 (22.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKI 208
++ V + +LKQ F++ G I SVKI
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKI 335
>UNIPROTKB|F8W1T6 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
Length = 344
Score = 152 (58.6 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 3 STPNSEARLSGIG-----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKG 56
STPNS + +G N +++ L + L ++ +G I S+K ++ + K KG
Sbjct: 39 STPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 98
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
YGFV + +P +A A+ L+ + V+ + + QE NLY+ NL M
Sbjct: 99 YGFVDFDSPSAAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMD 147
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L FG++ S I +D +GTS+G G
Sbjct: 148 EQELEGMLKPFGQVISTRILRDTSGTSRGVG 178
Score = 115 (45.5 bits), Expect = 0.00063, P = 0.00063
Identities = 46/161 (28%), Positives = 76/161 (47%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVLYVARAQKK 159
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A +K
Sbjct: 54 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSAAQK 112
Query: 160 AER--KAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 113 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSG 172
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
S+G A ++ K E ++ Y K PG+ + P+
Sbjct: 173 TSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPL 213
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 139 (54.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIE--- 73
F++ LA+ L +FS +GD++ + V++ + GKSKGYGFV + + AL A++
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137
Query: 74 -KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
K+ G V +L +I + S +YV N+ DM + L+ F +G +
Sbjct: 138 KKIDGR-VTVTQLAASGNQGTGSQIAD-ISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
Query: 133 LVISKD-ANGTSKGFGSKVLYVARAQKKA 160
+ D G S+GF V A + A
Sbjct: 196 GPLGFDKVTGKSRGFALFVYKTAEGAQAA 224
Score = 56 (24.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 238 YAKQGP-GLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNG 278
Y + G GL+S+ +P + +A+ P HGGM PNG
Sbjct: 361 YPESGHYGLSSSAG--YPGQHHQAVGTSPVPRVPHGGMYPNG 400
>RGD|1304813 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
Length = 379
Score = 147 (56.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 44/150 (29%), Positives = 71/150 (47%)
Query: 4 TPNSEARLSGIG-----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGY 57
TPNS + G N +++ L + + L ++ +G I S+K ++ + K KGY
Sbjct: 38 TPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 97
Query: 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
GFV + +P SA A+ L+ + V+ + + QE NLY+ NL M E
Sbjct: 98 GFVDFDSPSSAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDE 146
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ L FG++ S I +D G S+G G
Sbjct: 147 QELEGMLKPFGQVISTRILRDTTGASRGVG 176
Score = 119 (46.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G + AQK
Sbjct: 52 SKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSSAQK 110
Query: 159 K--AERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 111 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTG 170
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
S+G A ++ K E ++ Y K PG+A+ P+
Sbjct: 171 ASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPL 211
Score = 46 (21.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA 349
P V+ Y+G+++ + P+ +LQ S P++Q + G + N+L AAA
Sbjct: 282 PSPVSSYQGSVLTPGMDHPL-----SLQPASMMGPLTQ-QLGHLSLNSLGTFMPAAAA 333
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 154 (59.3 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 108 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 167
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 168 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 227
Query: 142 TSKGFG 147
KG+G
Sbjct: 228 KHKGYG 233
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 154 (59.3 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 116 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 175
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 176 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 235
Query: 142 TSKGFG 147
KG+G
Sbjct: 236 KHKGYG 241
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 154 (59.3 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 116 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 175
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 176 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 235
Query: 142 TSKGFG 147
KG+G
Sbjct: 236 KHKGYG 241
>UNIPROTKB|Q3ZC34 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
Length = 407
Score = 152 (58.6 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 46/152 (30%), Positives = 76/152 (50%)
Query: 3 STPNSEA------RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSK 55
STPNS + +LS N +++ L + + L ++ +G I S+K ++ + K K
Sbjct: 39 STPNSSSGSTAHDQLSKT-NLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCK 97
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
GYGFV + +P +A A+ L+ + V+ + + QE NLY+ NL M
Sbjct: 98 GYGFVDFDSPSAAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSM 146
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L FG++ S I +D +GTS+G G
Sbjct: 147 DEQELEGMLKPFGQVISTRILRDTSGTSRGVG 178
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 46/161 (28%), Positives = 76/161 (47%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVLYVARAQKK 159
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A +K
Sbjct: 54 SKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSAAQK 112
Query: 160 AER--KAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 113 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSG 172
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
S+G A ++ K E ++ Y K PG+ + P+
Sbjct: 173 TSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPL 213
>UNIPROTKB|Q15434 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
Length = 407
Score = 152 (58.6 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 3 STPNSEARLSGIG-----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKG 56
STPNS + +G N +++ L + L ++ +G I S+K ++ + K KG
Sbjct: 39 STPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 98
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
YGFV + +P +A A+ L+ + V+ + + QE NLY+ NL M
Sbjct: 99 YGFVDFDSPSAAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMD 147
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L FG++ S I +D +GTS+G G
Sbjct: 148 EQELEGMLKPFGQVISTRILRDTSGTSRGVG 178
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 66/257 (25%), Positives = 105/257 (40%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVLYVARAQKK 159
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A +K
Sbjct: 54 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSAAQK 112
Query: 160 AER--KAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 113 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSG 172
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E ++ Y K PG+ + P P L + A P R
Sbjct: 173 TSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPA---PSDPLLCKFA---DGGPKKRQ 226
Query: 272 --GGMIPNGXXXXXXXXXXXMAP--DSVTQYRGAMMNGHANF-PMPLMLSNLQKPSYNYP 326
G + NG MA D T + N P ++ + P + P
Sbjct: 227 NQGKFVQNGRAWPRNADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSP 286
Query: 327 ISQ-PRAGQAAANNLTN 342
+S R Q + + N
Sbjct: 287 VSSYQRVTQTSPLQVPN 303
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 154 (59.3 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 129 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 188
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 189 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 248
Query: 142 TSKGFG 147
KG+G
Sbjct: 249 KHKGYG 254
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 154 (59.3 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 145 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 204
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 205 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 264
Query: 142 TSKGFG 147
KG+G
Sbjct: 265 KHKGYG 270
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 154 (59.3 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 146 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 205
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 206 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 265
Query: 142 TSKGFG 147
KG+G
Sbjct: 266 KHKGYG 271
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 154 (59.3 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 150 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 209
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 210 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 269
Query: 142 TSKGFG 147
KG+G
Sbjct: 270 KHKGYG 275
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 154 (59.3 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 150 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 209
Query: 89 PF-IRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E +FN +YV ++ D++++ + F FGKI S +++D G
Sbjct: 210 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTG 269
Query: 142 TSKGFG 147
KG+G
Sbjct: 270 KHKGYG 275
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 155 (59.6 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 47/155 (30%), Positives = 78/155 (50%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
V NL+ L ++F K I K+ + +G+ KGY FV++ T E A +A+
Sbjct: 463 VNNLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 519
Query: 79 TVE----RMELYVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKI 130
+E R+E + P ++ + G FN L+V+ L +D TEE L E F G I
Sbjct: 520 EIEGRAIRLE-FSSPSWQKGNMNARGG-FNQQSKTLFVRGLSEDTTEETLRESFE--GSI 575
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++ +++ G+SKGFG V + + KA ++A+
Sbjct: 576 SARIVTDRDTGSSKGFGF-VDFSSPEDAKAAKEAM 609
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 40/147 (27%), Positives = 69/147 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FVKNL + ++ +F ++ ++V+++EG SKG ++++ T A A+E+ QG
Sbjct: 372 FVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 428
Query: 78 ATVERMEL---YVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
V+ + Y G ++ + G L V NL +EE L E F K TS+
Sbjct: 429 TEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KATSI 485
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKA 160
+ ++ G KG+ A K+A
Sbjct: 486 KMPQNNQGRPKGYAFVEFPTAEDAKEA 512
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 155 (59.6 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 47/155 (30%), Positives = 78/155 (50%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
V NL+ L ++F K I K+ + +G+ KGY FV++ T E A +A+
Sbjct: 465 VNNLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 79 TVE----RMELYVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKI 130
+E R+E + P ++ + G FN L+V+ L +D TEE L E F G I
Sbjct: 522 EIEGRAIRLE-FSSPSWQKGNMNARGG-FNQQSKTLFVRGLSEDTTEETLRESFE--GSI 577
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++ +++ G+SKGFG V + + KA ++A+
Sbjct: 578 SARIVTDRDTGSSKGFGF-VDFSSPEDAKAAKEAM 611
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 40/147 (27%), Positives = 69/147 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FVKNL + ++ +F ++ ++V+++EG SKG ++++ T A A+E+ QG
Sbjct: 374 FVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 78 ATVERMEL---YVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
V+ + Y G ++ + G L V NL +EE L E F K TS+
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KATSI 487
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKA 160
+ ++ G KG+ A K+A
Sbjct: 488 KMPQNNQGRPKGYAFVEFPTAEDAKEA 514
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 155 (59.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 47/155 (30%), Positives = 78/155 (50%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
V NL+ L ++F K I K+ + +G+ KGY FV++ T E A +A+
Sbjct: 465 VNNLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 79 TVE----RMELYVGPFIRRADRIQEGSSFNN----LYVKNLDDDMTEEILVEKFSEFGKI 130
+E R+E + P ++ + G FN L+V+ L +D TEE L E F G I
Sbjct: 522 EIEGRAIRLE-FSSPSWQKGNMNARGG-FNQQSKTLFVRGLSEDTTEETLRESFE--GSI 577
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++ +++ G+SKGFG V + + KA ++A+
Sbjct: 578 SARIVTDRDTGSSKGFGF-VDFSSPEDAKAAKEAM 611
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 40/147 (27%), Positives = 69/147 (46%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FVKNL + ++ +F ++ ++V+++EG SKG ++++ T A A+E+ QG
Sbjct: 374 FVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 78 ATVERMEL---YVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
V+ + Y G ++ + G L V NL +EE L E F K TS+
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KATSI 487
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKA 160
+ ++ G KG+ A K+A
Sbjct: 488 KMPQNNQGRPKGYAFVEFPTAEDAKEA 514
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 139 (54.0 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 38/137 (27%), Positives = 72/137 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +D LH FS G++ S KV+ ++ +S+GYGFV++ + +A + ++
Sbjct: 111 WVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYS 170
Query: 77 GATVERME----LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE-FGKIT 131
G+ + + + F R E +++V +L D+T+ +L E FS+ + +
Sbjct: 171 GSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVK 230
Query: 132 SLVISKDAN-GTSKGFG 147
S + D+N G SKG+G
Sbjct: 231 SAKVVIDSNTGRSKGYG 247
Score = 120 (47.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFS-KFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIE 73
+ FV +L+ + ++ LH+ FS ++ ++S+KVV+ S G+SKGYGFV++ A+
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 74 KLQGATVERMELYVG 88
++ GA ++ VG
Sbjct: 263 EMNGAYCSNRQMRVG 277
Score = 71 (30.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 99 EGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
+G S N ++V +D D+ +E L + FS+FG++ S+ I KG G +V A
Sbjct: 315 DGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGKGCG----FVQFAD 365
Query: 158 KKAERKAI 165
+K+ AI
Sbjct: 366 RKSAEDAI 373
Score = 55 (24.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 186 DEVDEIELKQYFSQCGTISSVKI 208
D +DE +L+Q FSQ G + SVKI
Sbjct: 331 DVIDE-DLRQPFSQFGEVVSVKI 352
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 149 (57.5 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 49/151 (32%), Positives = 78/151 (51%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYS 63
P+ EA+L FV NLA +++ L +F + G ++ ++V+ ++E +S+G+GFV S
Sbjct: 146 PSEEAKL------FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS 199
Query: 64 TPESALDAIEKLQGATVERMELYV------GPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
+ + A A+EK + L V G RA R+ E +F +YV NL D+
Sbjct: 200 SVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYE-PAFR-VYVGNLPWDVDN 257
Query: 118 EILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
L + FSE GK+ + D G S+GFG
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFG 288
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL +DN +L Q+FS+ G + ++VV +E G+S+G+GFV S + +AI L
Sbjct: 247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306
Query: 77 GATVERMELYVGPFIRRADR 96
G +E + V R R
Sbjct: 307 GQNLEGRAIRVNVAEERPPR 326
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 154 (59.3 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 47/159 (29%), Positives = 83/159 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +++ + + F+ FG I+S + ++Q K KG+ FV+Y PE A A+E+
Sbjct: 133 YVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQ--KHKGFAFVEYEIPEGAQLALEQ 190
Query: 75 LQGATVERMELYVG-----PFIRRA-DRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEF 127
+ GA + + VG P ++ D +QE SFN +YV ++ D++EE + F F
Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAF 250
Query: 128 GKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERKAI 165
G I +++ + T KG+G ++ A K+A +AI
Sbjct: 251 GPILYCKLAQGTSLHTHKGYG----FIEYANKQAMDEAI 285
Score = 43 (20.2 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 333 GQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPL--VKKLKVITHIFVK 390
G AAA L+ + AA + NLS + + +++++ L ++L V+ L+ ++ +K
Sbjct: 460 GAAAAAALSAAANNAAVTAANLSEN-IKKAHEKQQEELQKKLMDEGDVQTLQQQENMSIK 518
Query: 391 GQ 392
GQ
Sbjct: 519 GQ 520
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 152 (58.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 47/145 (32%), Positives = 78/145 (53%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV NL+ +D+ L + F G + S++V+ +E G+SKG+G+V ++TPE A A + Q
Sbjct: 242 FVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQ 301
Query: 77 GATVERMELYV----GPFIRRAD----RIQE-GSSFN----NLYVKNLDDDMTEEILVEK 123
GA ++ E+ V G D R ++ G + + L+V NL D E+ +
Sbjct: 302 GAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAF 361
Query: 124 FSEFGKITSLVI-SKDANGTSKGFG 147
FSE ++ SL + ++ +G KGFG
Sbjct: 362 FSEVAEVKSLRLPTEQESGRRKGFG 386
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 146 (56.5 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 49 SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 109 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 157
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 158 NMLKPFGHVISTRILRDANGVSRGVG 183
Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 114
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 115 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 174
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 175 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 218
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 153 (58.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 39/132 (29%), Positives = 65/132 (49%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +++ L + L + +++G I S+K ++ + +K YGFV + P A A++ L
Sbjct: 237 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT-TNKCYGFVDFEQPAFAECAVKGL 295
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
QG V+ VG ++ IQ+ NLY+ NL E L S++G++ S I
Sbjct: 296 QGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYKETDLEAMLSKYGQVVSTRI 355
Query: 136 SKDANGTSKGFG 147
+D SKG G
Sbjct: 356 LRDQQMNSKGVG 367
>SGD|S000003482 [details] [associations]
symbol:YGR250C "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000003482 EMBL:BK006941 GO:GO:0000166 KO:K00033
RefSeq:NP_011772.3 GeneID:853172 KEGG:sce:YGR256W
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010494 RefSeq:NP_011766.3
GeneID:853165 KEGG:sce:YGR250C EMBL:Z73035 PIR:S64576
ProteinModelPortal:P53316 SMR:P53316 DIP:DIP-5559N IntAct:P53316
MINT:MINT-388955 STRING:P53316 PaxDb:P53316 PeptideAtlas:P53316
EnsemblFungi:YGR250C CYGD:YGR250c eggNOG:NOG306754
HOGENOM:HOG000142071 OMA:NYHVERK OrthoDB:EOG4JWZP9 NextBio:973276
Genevestigator:P53316 GermOnline:YGR250C Uniprot:P53316
Length = 781
Score = 140 (54.3 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
WS ++ L+ GN FV +A ++ +L +FSK+G I S K++ + +G+ GYGF+
Sbjct: 182 WSIGVNKHALTYPGNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFI 241
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
Y A I++L G TV L++ + R +R E ++++ N DD+
Sbjct: 242 SYPLGSQASLCIKELNGRTVNGSTLFINYHVERKER--ERIHWDHVKENNNDDN 293
Score = 60 (26.2 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+NLYVK++ T+E L + + FG+I S+ +
Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKV 571
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 148 (57.2 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 50/171 (29%), Positives = 85/171 (49%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQGAT 79
N+ +T D L+ + F +FG++ VV + + +S+ +GFV YST E A DA +
Sbjct: 16 NVQTTNDGLRSY--FEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEA-DAAMAARPHV 72
Query: 80 VERMELYVGPFIRRAD--RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT-SLVIS 136
V+ + V + R D R + + ++V L DD+ E+ L E FS+FG I S VI+
Sbjct: 73 VDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVIT 132
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
G +GFG +V + KA++ +F + + E+ K + +
Sbjct: 133 DKDTGKKRGFG----FVHFEDNDSADKAVV-LKFHMINGHKVEVKKALTKQ 178
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE--GK--SKGYGFVQYSTPESALDAIE 73
F+KNL T L + FSK G ++S + ++ G S G+GFV+Y PESA A+
Sbjct: 396 FIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALR 455
Query: 74 KLQGATVE--RMELYVG-----PFIRRADRIQ--EGSSFNNLYVKNLDDDMTEEILVEKF 124
+LQG V+ ++E+ + P ++ + + Q + + + V+N+ T + E F
Sbjct: 456 RLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELF 515
Query: 125 SEFGKITSLVISKDANGTS--KGFGSKVLYVARAQKKA 160
S FG++ ++ + K GT +GFG + KKA
Sbjct: 516 STFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 553
Score = 109 (43.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPE 66
E LS G FV+NL T L +IFSK+G + + + K KG+ F+ Y PE
Sbjct: 71 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 130
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ A ++ G + +++ P + +I++
Sbjct: 131 HAVKAYAEMDGQVFQGRMMHLLPSTIKKLKIED 163
Score = 88 (36.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISK--DANGT--SKGFGSKVLYVARAQKKAE 161
L++KNL+ TE L E FS+ G + S ISK D GT S GFG +V + ++
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFG----FVEYKKPESA 450
Query: 162 RKAILRAQ 169
+KA+ R Q
Sbjct: 451 QKALRRLQ 458
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/152 (30%), Positives = 74/152 (48%)
Query: 3 STPNSEA------RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSK 55
STPNS +LS N +++ L + L ++ +G I S+K ++ + K K
Sbjct: 9 STPNSSNGSNVNDQLSKT-NLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCK 67
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
GYGFV + +P +A A+ L+ + V+ + + QE NLY+ NL M
Sbjct: 68 GYGFVDFDSPSAAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSM 116
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+ L FG++ S I +D +GTS+G G
Sbjct: 117 DEQELEGMLKPFGQVISTRILRDTSGTSRGVG 148
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 47/174 (27%), Positives = 79/174 (45%)
Query: 89 PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGF 146
P + + S NLY++ L T++ LV+ +GKI T ++ K N KG+
Sbjct: 11 PNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTN-KCKGY 69
Query: 147 GSKVLYVARAQKKAER--KAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCG 201
G A +KA KA ++AQ + +++ LY N+ +DE EL+ G
Sbjct: 70 GFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFG 129
Query: 202 TISSVKIMRTDRGISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
+ S +I+R G S+G A ++ K E ++ Y K PG+ + P+
Sbjct: 130 QVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPL 183
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 137 (53.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 50 QEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK 109
Q+G+S GYGFV Y E A A+ L G ++ + V + R + +G+ NLYV
Sbjct: 80 QQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVS-YARPSSESIKGA---NLYVS 135
Query: 110 NLDDDMTEEILVEKFSEFGKI-TSLVISKDANGTSKGFG 147
L ++++ L F+ FGKI TS ++ + +G SKG G
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVG 174
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV NLA + L Q+F FG +QS KV+ Q K KG+GFV + + A+ AI+ L
Sbjct: 276 FVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLN 335
Query: 77 GATVERMELYV 87
G T+ L V
Sbjct: 336 GYTLGNRVLQV 346
Score = 104 (41.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
++ P+SE+ + G N +V L + L +F+ FG I +S+++ G SKG GF+
Sbjct: 119 YARPSSES-IKG-ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFI 176
Query: 61 QYSTPESALDAIEKLQGAT 79
++ A AI++L G T
Sbjct: 177 RFDQRNEAERAIQELNGKT 195
Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
N+ E +E L Q F G + SVK++R D SK
Sbjct: 279 NLAPETEENVLWQLFGPFGAVQSVKVIR-DLQTSK 312
Score = 49 (22.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 330 PRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPL--VKKLKVI 384
P AG AN++ GN A + + +P+ +++L Q P V+ +KVI
Sbjct: 252 PLAGDLLANSILPGN---AMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVI 305
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 40/126 (31%), Positives = 69/126 (54%)
Query: 31 LHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG- 88
+ Q F+ FG I+S + S K KG+ FV+Y PE+A A+E++ + + VG
Sbjct: 102 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
Query: 89 P-FIRRADRI-----QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANG 141
P I +A I +E ++N +YV ++ D++++ + F FGKI S +++++ G
Sbjct: 162 PGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTG 221
Query: 142 TSKGFG 147
KGFG
Sbjct: 222 KHKGFG 227
>ZFIN|ZDB-GENE-040801-51 [details] [associations]
symbol:rbms2b "RNA binding motif, single stranded
interacting protein 2b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040801-51 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 OMA:GHQMAPP EMBL:BX005414 EMBL:BC076435
IPI:IPI00482514 RefSeq:NP_001003541.1 UniGene:Dr.33950 SMR:Q6DGB5
Ensembl:ENSDART00000060059 GeneID:445147 KEGG:dre:445147
InParanoid:Q6DGB5 NextBio:20831910 Uniprot:Q6DGB5
Length = 400
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 41/133 (30%), Positives = 66/133 (49%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P SA A+
Sbjct: 59 NLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTA 118
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L F ++ S
Sbjct: 119 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELESMLKPFSQVISTR 167
Query: 135 ISKDANGTSKGFG 147
I +DANGTS+G G
Sbjct: 168 ILRDANGTSRGVG 180
Score = 116 (45.9 bits), Expect = 0.00063, P = 0.00063
Identities = 46/165 (27%), Positives = 77/165 (46%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 56 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPASAQK 114
Query: 159 K--AERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ + S +I+R G
Sbjct: 115 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELESMLKPFSQVISTRILRDANG 174
Query: 215 ISKGHCMAIAQTKRERTSYLRIM---YAKQGPGLASTIFPVHPTL 256
S+G A ++ + + ++ Y K PG+A P P L
Sbjct: 175 TSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVA---VPTEPLL 216
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 30 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 89
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 90 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 138
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 139 ILRDSSGTSRGVG 151
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 53/191 (27%), Positives = 87/191 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 27 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 85
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 86 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 145
Query: 215 ISKGHCMAIAQTKRERTSYLRIM-------YAKQGPGLASTIFPVHPTLYQRALQVYQAP 267
S+G + A+ + E T + + K PG+++ P P L + A Q
Sbjct: 146 TSRG--VGFARNRMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKK 199
Query: 268 DFRHGGMIPNG 278
IPNG
Sbjct: 200 RQNPNKYIPNG 210
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV L D+ L FSK+GD+ SK++ +E G+S+G+GFV +++ E+ AIE +
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 77 GATVERMELYVGPF-IRRAD 95
G ++ + V RR+D
Sbjct: 69 GQDLDGRNITVNEAQSRRSD 88
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 68/250 (27%), Positives = 110/250 (44%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
FV L L F ++G+I+ K VV + G+SKGYGF+ + + A +A+++ Q
Sbjct: 131 FVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQ 190
Query: 77 ---GATVERMELY-VGPFIRRADRIQEGSSFN------NLYVKNLDDDMTEEILVEKFSE 126
G + +L +GP ++ + FN +YV N+ D+ + L+E FS
Sbjct: 191 KKIGTRMTACQLASIGP-VQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSR 249
Query: 127 FGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNIN 185
FG+I + D A G KGF L+V R+ + A +KA L + +K N
Sbjct: 250 FGEIEEGPLGLDKATGRPKGFA---LFVYRSLESA-KKA-LEEPHKTFEGHVLHCHK-AN 303
Query: 186 DEVDEIELKQYFSQCGTISSVKIMRTDR---GISKGHCMAIAQTKRERTSY-------LR 235
D +++ Q+ +S + R D G GH IA + ++ L
Sbjct: 304 DGPKQVKQHQHNHNSHNQNS-RYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALT 362
Query: 236 IMYAKQGPGL 245
+ A QG GL
Sbjct: 363 ALLASQGAGL 372
>UNIPROTKB|D4A988 [details] [associations]
symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
Length = 352
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 44/150 (29%), Positives = 71/150 (47%)
Query: 4 TPNSEARLSGIG-----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGY 57
TPNS + G N +++ L + + L ++ +G I S+K ++ + K KGY
Sbjct: 38 TPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY 97
Query: 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
GFV + +P SA A+ L+ + V+ + + QE NLY+ NL M E
Sbjct: 98 GFVDFDSPSSAQKAVTALKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDE 146
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ L FG++ S I +D G S+G G
Sbjct: 147 QELEGMLKPFGQVISTRILRDTTGASRGVG 176
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G + AQK
Sbjct: 52 SKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSSAQK 110
Query: 159 K--AERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 111 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTG 170
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
S+G A ++ K E ++ Y K PG+A+ P+
Sbjct: 171 ASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPL 211
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 123 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 172 ILRDSSGTSRGVG 184
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 53/187 (28%), Positives = 86/187 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 118
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 119 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 178
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 179 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 234
Query: 272 GGMIPNG 278
IPNG
Sbjct: 235 NKYIPNG 241
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 61 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 120
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 121 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 169
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 170 ILRDSSGTSRGVG 182
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 53/187 (28%), Positives = 86/187 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 58 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 116
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 117 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 176
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 177 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 232
Query: 272 GGMIPNG 278
IPNG
Sbjct: 233 NKYIPNG 239
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 153 (58.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE--GK--SKGYGFVQYSTPESALDAIE 73
F+KNL L + FSK G ++S + ++ GK S GYGFVQY TPE+A A+
Sbjct: 705 FIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMR 764
Query: 74 KLQGATVERMELYVG-------PFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEK 123
+LQ TV+ +L V + +A R ++ + + + + V+N+ T + L E
Sbjct: 765 QLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELREL 824
Query: 124 FSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYK 182
F FG++ ++ + K G+ +GFG + ++ + K A+ + R+ E +
Sbjct: 825 FCTFGELKTVRLPKKGIGGSHRGFGF-IDFLTKQDAKKAFSALCHSTHLYGRRLVLE-WA 882
Query: 183 NINDEVDEIELK--QYF 197
+ + VD++ K Q+F
Sbjct: 883 DAEETVDDLRRKTAQHF 899
Score = 110 (43.8 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIE 73
G F++N+ T L ++FSK G + + S K KG+ FV Y PE+A+ A+
Sbjct: 399 GRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALA 458
Query: 74 KLQGATVERMELYVGPFIRRADRIQEG 100
+L G T + L+V + ++ +G
Sbjct: 459 QLDGHTFQGRVLHVMASRLKKEKADQG 485
Score = 84 (34.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
VKNL + + + ++F+ FG + + +++GK + +GFV + T E A A++ +
Sbjct: 6 VKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFNKS 65
Query: 79 TVERMELYV 87
V+ + V
Sbjct: 66 FVDTSRVTV 74
Score = 79 (32.9 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 95 DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK--DANGT--SKGFGSKV 150
D+I GS+ L++KNL+ +EE L + FS+ G + S ISK D G S G+G
Sbjct: 696 DQILPGST---LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQ 752
Query: 151 LYVARAQKKAERK 163
A +KA R+
Sbjct: 753 YKTPEAAQKAMRQ 765
Score = 48 (22.0 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 155 RAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
R K +A + Q R + L +NI + EL++ F G + +V++ + +G
Sbjct: 783 REVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPK--KG 840
Query: 215 ISKGH 219
I H
Sbjct: 841 IGGSH 845
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 153 (58.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE--GK--SKGYGFVQYSTPESALDAIE 73
F+KNL T L + FSK G ++S + ++ G S G+GFV+Y PESA A+
Sbjct: 720 FIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALR 779
Query: 74 KLQGATVE--RMELYVG-----PFIRRADRIQ--EGSSFNNLYVKNLDDDMTEEILVEKF 124
+LQG V+ ++E+ + P ++ + + Q + + + V+N+ T + E F
Sbjct: 780 RLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELF 839
Query: 125 SEFGKITSLVISKDANGTS--KGFGSKVLYVARAQKKA 160
S FG++ ++ + K GT +GFG + KKA
Sbjct: 840 STFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 877
Score = 109 (43.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPE 66
E LS G FV+NL T L +IFSK+G + + + K KG+ F+ Y PE
Sbjct: 395 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 454
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ A ++ G + +++ P + +I++
Sbjct: 455 HAVKAYAEMDGQVFQGRMMHLLPSTIKKLKIED 487
Score = 88 (36.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISK--DANGT--SKGFGSKVLYVARAQKKAE 161
L++KNL+ TE L E FS+ G + S ISK D GT S GFG +V + ++
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFG----FVEYKKPESA 774
Query: 162 RKAILRAQ 169
+KA+ R Q
Sbjct: 775 QKALRRLQ 782
>ZFIN|ZDB-GENE-060929-244 [details] [associations]
symbol:rbms3 "RNA binding motif, single stranded
interacting protein" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
Ensembl:ENSDART00000136719 Uniprot:F1QEI2
Length = 415
Score = 148 (57.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 42/146 (28%), Positives = 70/146 (47%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ +S A N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 44 SSSHSAAEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 103
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ + V+ + + QE NLY+ NL M E+ L
Sbjct: 104 FDSPAAAQKAVASLKASGVQA----------QMAKQQEQDP-TNLYISNLPVSMDEQELE 152
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 153 NMLKPFGHVISTRILRDANGVSRGVG 178
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 109
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 110 AQKAVASLKASGVQAQMAKQQEQDPTNLYISNLPVSMDEQELENMLKPFGHVISTRILRD 169
Query: 212 DRGISKG 218
G+S+G
Sbjct: 170 ANGVSRG 176
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 148 (57.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 64 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 123
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 124 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 172
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 173 ILRDSSGTSRGVG 185
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 66/262 (25%), Positives = 110/262 (41%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 61 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 119
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 120 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 179
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 180 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 235
Query: 272 GGMIPNGXX-XXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSN---LQKPSYNYPI 327
IPNG + D T A+ NG +P P ++ + + S I
Sbjct: 236 NKYIPNGRPWHREGEAGMTLTYDPTT---AAIQNGF--YPSPYSIATNRMITQTSLTPYI 290
Query: 328 SQPRAGQAAANNLTNGNHRAAA 349
+ P + A +R +A
Sbjct: 291 ASPVSAYQVAKETRENKYRGSA 312
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 149 (57.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
++ NL + +D L ++F + G++++ + + G GYGFV+Y E
Sbjct: 23 YIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE------YECEY 76
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFN---NLYVKNLDDDMTEEILVEKFSEFGKITSL 133
A + M G +R Q+ SF+ NL++ NLDD++ E++L + FS FG+I ++
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTV 136
Query: 134 VISKDANGTSKGFG 147
+ ++ + TSKG G
Sbjct: 137 KVMRNEDDTSKGHG 150
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 49/137 (35%), Positives = 69/137 (50%)
Query: 97 IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS------- 148
I E ++ LY+ NLD + EEIL E F + G + ++ I +D NG G+G
Sbjct: 13 IYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEY 72
Query: 149 KVLYVARA--QKKAERKAIL--RA-QFERMRKERAELY-KNINDEVDEIELKQYFSQCGT 202
+ Y A K KA+ +A Q +R A L+ N++DEVDE L FS G
Sbjct: 73 ECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQ 132
Query: 203 ISSVKIMRTDRGISKGH 219
I +VK+MR + SKGH
Sbjct: 133 IMTVKVMRNEDDTSKGH 149
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 8 EARLSGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
+ R +G N F+ NL +D L IFS FG I + KV+ +++ SKG+GF+ Y E
Sbjct: 99 DKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFE 158
Query: 67 SALDAIEKLQGATVERMELYV 87
S+ AIE + + ++++
Sbjct: 159 SSDLAIENMNNQFICNKKVHI 179
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 149 (57.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
++ NL + +D L ++F + G++++ + + G GYGFV+Y E
Sbjct: 23 YIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE------YECEY 76
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFN---NLYVKNLDDDMTEEILVEKFSEFGKITSL 133
A + M G +R Q+ SF+ NL++ NLDD++ E++L + FS FG+I ++
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTV 136
Query: 134 VISKDANGTSKGFG 147
+ ++ + TSKG G
Sbjct: 137 KVMRNEDDTSKGHG 150
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 49/137 (35%), Positives = 69/137 (50%)
Query: 97 IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS------- 148
I E ++ LY+ NLD + EEIL E F + G + ++ I +D NG G+G
Sbjct: 13 IYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEY 72
Query: 149 KVLYVARA--QKKAERKAIL--RA-QFERMRKERAELY-KNINDEVDEIELKQYFSQCGT 202
+ Y A K KA+ +A Q +R A L+ N++DEVDE L FS G
Sbjct: 73 ECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQ 132
Query: 203 ISSVKIMRTDRGISKGH 219
I +VK+MR + SKGH
Sbjct: 133 IMTVKVMRNEDDTSKGH 149
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 8 EARLSGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
+ R +G N F+ NL +D L IFS FG I + KV+ +++ SKG+GF+ Y E
Sbjct: 99 DKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFE 158
Query: 67 SALDAIEKLQGATVERMELYV 87
S+ AIE + + ++++
Sbjct: 159 SSDLAIENMNNQFICNKKVHI 179
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 145 (56.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 48/171 (28%), Positives = 84/171 (49%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGAT 79
N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS E A DA
Sbjct: 15 NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHA 71
Query: 80 VERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VIS 136
V+ + + + R D + G+ L+V L D+ E L+E FS+FG + +I+
Sbjct: 72 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIA 131
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
+G +GFG +Y ++ A++ A+++ F ++ R E+ K + E
Sbjct: 132 DKQSGKKRGFG--FVYF-QSHDAADKAAVVK--FHPIQGHRVEVKKAVPKE 177
>RGD|1307777 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 147 (56.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 123 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 135 ISKDANGTSKGFG 147
+ +D++GTS+G G
Sbjct: 172 VLRDSSGTSRGVG 184
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 52/186 (27%), Positives = 84/186 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFGSKVL-YVARAQK- 158
S NLY++ L + T++ LV+ +GKI S I A KG+G A AQK
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119
Query: 159 -KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
A + + ++AQ + +++ LY N+ +DE EL+ G + S +++R G
Sbjct: 120 VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGT 179
Query: 216 SKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG 272
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNPN 235
Query: 273 GMIPNG 278
IPNG
Sbjct: 236 KYIPNG 241
>UNIPROTKB|Q5PQP1 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 147 (56.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 123 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 135 ISKDANGTSKGFG 147
+ +D++GTS+G G
Sbjct: 172 VLRDSSGTSRGVG 184
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 52/186 (27%), Positives = 84/186 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFGSKVL-YVARAQK- 158
S NLY++ L + T++ LV+ +GKI S I A KG+G A AQK
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119
Query: 159 -KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
A + + ++AQ + +++ LY N+ +DE EL+ G + S +++R G
Sbjct: 120 VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGT 179
Query: 216 SKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG 272
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNPN 235
Query: 273 GMIPNG 278
IPNG
Sbjct: 236 KYIPNG 241
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 41/132 (31%), Positives = 68/132 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N + L + +LH++FSKFG+I+ +K++ + G S YGFV Y + A A+
Sbjct: 42 NLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL- 133
+ G L V F R ++ E +S ++LYV NL M E+ + E F+ +G I +
Sbjct: 102 MDGYETRGKRLKVA-FARPSE--YESTS-SSLYVGNLPTYMDEKKVRELFATYGNIVDVN 157
Query: 134 VISKDANGTSKG 145
++ N S+G
Sbjct: 158 LLRHKFNNRSRG 169
>MGI|MGI:1861776 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
Length = 383
Score = 141 (54.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 39/133 (29%), Positives = 65/133 (48%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P SA A+
Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTA 118
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 119 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELEGMLKPFGQVISTR 167
Query: 135 ISKDANGTSKGFG 147
I +D +G S+G G
Sbjct: 168 ILRDTSGASRGVG 180
Score = 118 (46.6 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G + AQK
Sbjct: 56 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSSAQK 114
Query: 159 K--AERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 115 AVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSG 174
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPV 252
S+G A ++ K E ++ Y K PG+A+ P+
Sbjct: 175 ASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPL 215
Score = 46 (21.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA 349
P V+ Y+G+++ + P+ +LQ S P++Q + G + N+L AAA
Sbjct: 286 PSPVSSYQGSVLTPGMDHPL-----SLQPASMMGPLTQ-QLGHLSLNSLGTFMPAAAA 337
>UNIPROTKB|D4A6H0 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
ArrayExpress:D4A6H0 Uniprot:D4A6H0
Length = 411
Score = 147 (56.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 55 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 114
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 115 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 163
Query: 135 ISKDANGTSKGFG 147
+ +D++GTS+G G
Sbjct: 164 VLRDSSGTSRGVG 176
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 52/186 (27%), Positives = 84/186 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFGSKVL-YVARAQK- 158
S NLY++ L + T++ LV+ +GKI S I A KG+G A AQK
Sbjct: 52 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 111
Query: 159 -KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
A + + ++AQ + +++ LY N+ +DE EL+ G + S +++R G
Sbjct: 112 VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGT 171
Query: 216 SKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG 272
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 172 SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNPN 227
Query: 273 GMIPNG 278
IPNG
Sbjct: 228 KYIPNG 233
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 137 (53.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 40/133 (30%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
+ +V N+ + + L +IF+ G ++SSK++ ++ KS YGFV Y SA AI L
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLI--RKDKSS-YGFVHYFDRRSAALAILSL 116
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
G + + V R ++ SS N++V +L ++T+ L + FS F + +
Sbjct: 117 NGRHLFGQPIKVNWAYATGQR-EDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 136 SKDAN-GTSKGFG 147
D G S+GFG
Sbjct: 176 MWDQKTGRSRGFG 188
Score = 52 (23.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 183 NINDEVDEIELKQYFSQ--CGTISSVKIMRTDRG 214
N+ EV +++L +YF G I V++ R D+G
Sbjct: 271 NLAPEVTQLDLHRYFHALGAGVIEEVRVQR-DKG 303
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 82/349 (23%), Positives = 145/349 (41%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIE 73
G F+ L + L + FS+FG++Q V+ S G+S+G+GF+ + P++ +
Sbjct: 110 GKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMV 169
Query: 74 K---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
K L G ++ P +RA E + ++V + + TE+ + F +FG++
Sbjct: 170 KEHYLDGKIID-------P--KRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRV 220
Query: 131 --TSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEV 188
+L+I KD G +GFG V + + A +A L + + ++A+ N+ D+
Sbjct: 221 IDATLMIDKDT-GRPRGFGF-VTFDSEAAVEAALSRPLEILGKTIEVKKAQPRGNLRDDG 278
Query: 189 DEIELKQYF---SQCGTISSVKIMRTD-RGISKGHC--MAIAQTKRERTSYLRIMY---- 238
D + F SQ G+ S + +G+ G +AQ + Y +M
Sbjct: 279 DRGRRGRDFRDGSQGGSDGSQQQAGAQGQGVMPGGLTPQMMAQYWQRMQQYFALMQQQMA 338
Query: 239 --AKQGPGL-ASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGXXXXXXXXXXXMAPDSV 295
A QG G+ A + ++P L Q+ +Q+ Q + G N P S+
Sbjct: 339 VAATQGQGMGAMGMAGMNPALMQQ-MQMKQLQQMQMGN---NQQSPSMSPPAQSPTPQSM 394
Query: 296 TQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGN 344
MMN P M+ +Q+ N + GQ +GN
Sbjct: 395 QN----MMN-------PAMMQQMQQQMPNQGQANNMGGQMGMGGNGSGN 432
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 30 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 89
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 90 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 138
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 139 ILRDSSGTSRGVG 151
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 85
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 86 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 145
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 146 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 201
Query: 272 GGMIPNG 278
IPNG
Sbjct: 202 NKYIPNG 208
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 30 NLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 89
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 90 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 138
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 139 ILRDSSGTSRGVG 151
Score = 115 (45.5 bits), Expect = 0.00072, P = 0.00072
Identities = 38/124 (30%), Positives = 63/124 (50%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 27 SKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 85
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 86 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 145
Query: 215 ISKG 218
S+G
Sbjct: 146 TSRG 149
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FV+NL L ++F G++ + ++ S+ G +G G V+++ ES DAI K G
Sbjct: 125 FVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDG 183
Query: 78 ATVERMELYV---GP-------FIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
A +L V P F ++A R + + F +++ NL M + L + F E
Sbjct: 184 ALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFE-VFIINLPYSMNWQSLKDMFKEC 242
Query: 128 GKITSLVISKDANGTSKGFGSKVLY 152
G + + D NG S+GFGS V+Y
Sbjct: 243 GHVLRADVELDFNGFSRGFGS-VIY 266
>RGD|1588240 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
REFSEQ:XM_002727143 Ncbi:XP_002727189
Length = 430
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 44 SSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 103
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 104 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 152
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 153 NMLKPFGHVISTRILRDANGVSRGVG 178
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 109
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 110 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 169
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 170 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 213
>MGI|MGI:2444477 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444477 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOVERGEN:HBG053108 HSSP:Q15434 CTD:27303
OMA:QQMTVET OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 EMBL:AK030478
EMBL:AK030609 EMBL:AK032938 EMBL:AK033005 EMBL:AK041098
EMBL:AK046197 EMBL:AK052196 EMBL:BC108402 EMBL:BC117841
IPI:IPI00346515 IPI:IPI00474248 IPI:IPI00828372 IPI:IPI00828512
IPI:IPI00828705 IPI:IPI00828757 RefSeq:NP_001165592.1
RefSeq:NP_001165593.1 RefSeq:NP_001165594.1 RefSeq:NP_001165595.1
RefSeq:NP_001165597.1 RefSeq:NP_848775.2 UniGene:Mm.326411
ProteinModelPortal:Q8BWL5 SMR:Q8BWL5 PhosphoSite:Q8BWL5
PaxDb:Q8BWL5 PRIDE:Q8BWL5 Ensembl:ENSMUST00000044901
Ensembl:ENSMUST00000068962 Ensembl:ENSMUST00000111772
Ensembl:ENSMUST00000111773 Ensembl:ENSMUST00000164018
Ensembl:ENSMUST00000174868 GeneID:207181 KEGG:mmu:207181
UCSC:uc009ryv.2 UCSC:uc009ryw.2 UCSC:uc009ryx.2 UCSC:uc009ryy.2
UCSC:uc009ryz.2 UCSC:uc009rza.2 InParanoid:Q8BWL5 NextBio:371875
Bgee:Q8BWL5 Genevestigator:Q8BWL5 Uniprot:Q8BWL5
Length = 431
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 44 SSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 103
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 104 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 152
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 153 NMLKPFGHVISTRILRDANGVSRGVG 178
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 109
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 110 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 169
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 170 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 213
>UNIPROTKB|E1BPT6 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
Length = 437
Score = 147 (56.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 49 SSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 109 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 157
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 158 NMLKPFGHVISTRILRDANGVSRGVG 183
Score = 125 (49.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 114
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 115 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 174
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 175 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 218
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 103 (41.3 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FV + + +D ++ F ++G ++ K++ ++ G SKGYGFV + +D ++K+ G
Sbjct: 43 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND---VD-VQKIVG 98
Query: 78 ATVE--RMELYVGPFIRR 93
+ + +L +GP IR+
Sbjct: 99 SQIHFHGKKLKLGPAIRK 116
Score = 103 (41.3 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FV + + +D ++ F ++G ++ K++ ++ G SKGYGFV + +D ++K+ G
Sbjct: 208 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND---VD-VQKIVG 263
Query: 78 ATVE--RMELYVGPFIRR 93
+ + +L +GP IR+
Sbjct: 264 SQIHFHGKKLKLGPAIRK 281
Score = 68 (29.0 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
I+ +DE E+ F + G++ VKI+ G+SKG+
Sbjct: 377 IDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGY 412
Score = 68 (29.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
I+ +DE E+ F + G++ VKI+ G+SKG+
Sbjct: 212 IDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGY 247
Score = 64 (27.6 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
N ++V +D M E + F +G + + I + G SKG+G
Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYG 248
Score = 64 (27.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
N ++V +D M E + F +G + + I + G SKG+G
Sbjct: 370 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYG 413
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 55 NLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 114
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 115 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 163
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 164 ILRDSSGTSRGVG 176
Score = 115 (45.5 bits), Expect = 0.00080, P = 0.00080
Identities = 38/124 (30%), Positives = 63/124 (50%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L + T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 52 SKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 110
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 111 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 170
Query: 215 ISKG 218
S+G
Sbjct: 171 TSRG 174
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 146 (56.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 123 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 172 ILRDSSGTSRGVG 184
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 118
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 119 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 178
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 179 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 234
Query: 272 GGMIPNG 278
IPNG
Sbjct: 235 NKYIPNG 241
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 46/159 (28%), Positives = 81/159 (50%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-----SKGYGFVQYSTPESALDAI 72
F+KNL + L +FSK G I+S + ++ K S G+GFV+Y PE A A+
Sbjct: 725 FIKNLNFSTTEETLKGVFSKVGAIKSC-TISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 73 EKLQGATVE--RMELYVG-----PFIR--RADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
++LQG TV+ ++E+ + P + R ++ + + + + V+N+ + + E
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIREL 843
Query: 124 FSEFGKITSLVISKDANGTS--KGFGSKVLYVARAQKKA 160
FS FG++ ++ + K GT +GFG + KKA
Sbjct: 844 FSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882
Score = 113 (44.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPE 66
E L+ G FV+NL+ T L ++FS +G + + S K KG+ FV + PE
Sbjct: 393 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK 109
A+ A ++ G + L+V P + + QE ++ + Y K
Sbjct: 453 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKK 495
Score = 57 (25.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/80 (21%), Positives = 42/80 (52%)
Query: 155 RAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR- 210
R ++A + A+ + +++ K++ L +NI + ++ E+++ FS G + +V++ +
Sbjct: 799 RISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 858
Query: 211 -TDRGISKGHCMAIAQTKRE 229
T G +G TK++
Sbjct: 859 MTGTGAHRGFGFVDFITKQD 878
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 142 (55.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 38/137 (27%), Positives = 72/137 (52%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +D LH FS ++ S KV+ +++ +S+GYGFV++ + +A +A++
Sbjct: 122 WVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFS 181
Query: 77 GATVERME----LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS-EFGKIT 131
G T+ E L F R E +++V +L D+++ +L+E F+ + +
Sbjct: 182 GVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVK 241
Query: 132 SLVISKDAN-GTSKGFG 147
+ D+N G SKG+G
Sbjct: 242 GAKVVIDSNTGRSKGYG 258
Score = 104 (41.7 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 2 WST-PNSEARLSGIG---NAFVKNLASTIDNLKLHQIFS-KFGDIQSSKVVV-SQEGKSK 55
W++ E R S G + FV +LA + + L + F+ ++ ++ +KVV+ S G+SK
Sbjct: 196 WASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSK 255
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVG 88
GYGFV++ A+ ++ GA ++ VG
Sbjct: 256 GYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG 288
Score = 84 (34.6 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 97 IQEGSSFNN-LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVAR 155
+ +G S N+ ++V LD D+TEE L++ FS+FG++ S+ I KG G +V
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCG----FVQF 369
Query: 156 AQKKAERKAI 165
A +++ +AI
Sbjct: 370 ANRQSAEEAI 379
Score = 46 (21.3 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKI 208
++ +V E +L Q FS G + SVKI
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKI 358
>UNIPROTKB|B4DN88 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
Uniprot:B4DN88
Length = 419
Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L ++ +G I S+K ++ + K KGYGFV + +P +A A+
Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L+ + V+ + + QE NLY+ NL M E+ L FG++ S
Sbjct: 123 LKASGVQA----------QMAKQQEQDP-TNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 135 ISKDANGTSKGFG 147
I +D++GTS+G G
Sbjct: 172 ILRDSSGTSRGVG 184
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 66/262 (25%), Positives = 109/262 (41%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVARAQK 158
S NLY++ L T++ LV+ +GKI T ++ K N KG+G A AQK
Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPAAAQK 118
Query: 159 --KAERKAILRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
A + + ++AQ + +++ LY N+ +DE EL+ G + S +I+R G
Sbjct: 119 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG 178
Query: 215 ISKGHCMAIAQT--KRERT-SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRH 271
S+G A ++ K E + + K PG+++ P P L + A Q
Sbjct: 179 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA---PTEPLLCKFA-DGGQKKRQNP 234
Query: 272 GGMIPNGXX-XXXXXXXXXMAPDSVTQYRGAMMNGHANFPMPLMLSN---LQKPSYNYPI 327
IPNG + D T A+ NG +P P ++ + + S I
Sbjct: 235 NKYIPNGRPWHREGEAGMTLTYDPTT---AAIQNGF--YPSPYSIATNRMITQTSITPYI 289
Query: 328 SQPRAGQAAANNLTNGNHRAAA 349
+ P + A +R +A
Sbjct: 290 ASPVSAYQVAKETRENKYRGSA 311
>UNIPROTKB|E1BTJ0 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AADN02001158 EMBL:AADN02001159 EMBL:AADN02001160
EMBL:AADN02001161 EMBL:AADN02001162 IPI:IPI00583817
Ensembl:ENSGALT00000018654 Uniprot:E1BTJ0
Length = 433
Score = 146 (56.5 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 48 SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 107
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 108 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPVSMDEQELE 156
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 157 NMLKPFGHVISTRILRDANGVSRGVG 182
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 50/168 (29%), Positives = 80/168 (47%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 113
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 114 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPVSMDEQELENMLKPFGHVISTRILRD 173
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPVHPTL 256
G+S+G A + T++ + Y K PGL + P P L
Sbjct: 174 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGLPA---PTEPLL 218
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 35 FSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94
FS FG I S+KV++ + G+SKG+GFV +S+PE A A+ ++ G V LYV R+
Sbjct: 5 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 95 DR 96
+R
Sbjct: 64 ER 65
>UNIPROTKB|E2RA90 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
Length = 437
Score = 147 (56.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 49 SSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 109 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 157
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 158 NMLKPFGHVISTRILRDANGVSRGVG 183
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 114
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 115 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 174
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 175 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 218
Score = 39 (18.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKP 321
P V Q GA++ + PM + +N+ P
Sbjct: 306 PPYVMQPTGAVITPTMDHPMSMQPANMMGP 335
Score = 37 (18.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 316 SNLQKPSYNYPISQP 330
SN P+Y+Y S+P
Sbjct: 423 SNEHAPAYSYQQSKP 437
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 48/171 (28%), Positives = 82/171 (47%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGAT 79
N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS E A DA
Sbjct: 15 NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHA 71
Query: 80 VERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VIS 136
V+ + + + R D + G+ L+V L D+ E L+E FS+FG + +I+
Sbjct: 72 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIA 131
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
+G +GFG +Y A++ A+++ F ++ R E+ K + E
Sbjct: 132 DKQSGKKRGFG--FVYFQN-HDAADKAAVVK--FHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL + LHQ FS+FG I+S K+V + + G+SKGY FV Y TP+ A+ A++
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-H 105
Query: 77 GATVERMELYV 87
G ++ L V
Sbjct: 106 GKDLQGRSLVV 116
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL + LHQ FS+FG I+S K+V + + G+SKGY FV Y TP+ A+ A++
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-H 105
Query: 77 GATVERMELYV 87
G ++ L V
Sbjct: 106 GKDLQGRSLVV 116
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 142 (55.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 48/171 (28%), Positives = 82/171 (47%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGAT 79
N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS E A DA
Sbjct: 20 NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHA 76
Query: 80 VERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VIS 136
V+ + + + R D + G+ L+V L D+ E L+E FS+FG + +I+
Sbjct: 77 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIA 136
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
+G +GFG +Y A++ A+++ F ++ R E+ K + E
Sbjct: 137 DKQSGKKRGFG--FVYFQN-HDAADKAAVVK--FHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 142 (55.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 48/171 (28%), Positives = 82/171 (47%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGAT 79
N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS E A DA
Sbjct: 15 NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHA 71
Query: 80 VERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VIS 136
V+ + + + R D + G+ L+V L D+ E L+E FS+FG + +I+
Sbjct: 72 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIA 131
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
+G +GFG +Y A++ A+++ F ++ R E+ K + E
Sbjct: 132 DKQSGKKRGFG--FVYFQN-HDAADKAAVVK--FHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 142 (55.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 48/171 (28%), Positives = 82/171 (47%)
Query: 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGAT 79
N+ ++ L+ H F FG + VVV+ + K S+ +GFV YS E A DA
Sbjct: 20 NVQTSESGLRGH--FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHA 76
Query: 80 VERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VIS 136
V+ + + + R D + G+ L+V L D+ E L+E FS+FG + +I+
Sbjct: 77 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIA 136
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE 187
+G +GFG +Y A++ A+++ F ++ R E+ K + E
Sbjct: 137 DKQSGKKRGFG--FVYFQN-HDAADKAAVVK--FHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|J3QT21 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012262 EMBL:AC021068 EMBL:AC092795 EMBL:AC092796
EMBL:AC097633 EMBL:AC098650 EMBL:AC099048 HGNC:HGNC:13427
ChiTaRS:RBMS3 ProteinModelPortal:J3QT21 Ensembl:ENST00000396583
Uniprot:J3QT21
Length = 434
Score = 146 (56.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 49 SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 109 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 157
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 158 NMLKPFGHVISTRILRDANGVSRGVG 183
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 114
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 115 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 174
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 175 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 218
Score = 39 (18.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKP 321
P V Q GA++ + PM + +N+ P
Sbjct: 319 PPYVMQPTGAVITPTMDHPMSMQPANMMGP 348
Score = 37 (18.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 316 SNLQKPSYNYPISQP 330
SN P+Y+Y S+P
Sbjct: 420 SNEHAPAYSYQQSKP 434
>UNIPROTKB|C9JIJ9 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068
EMBL:AC092795 EMBL:AC092796 EMBL:AC097633 EMBL:AC098650
EMBL:AC099048 HGNC:HGNC:13427 OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3
IPI:IPI00927842 ProteinModelPortal:C9JIJ9 SMR:C9JIJ9 STRING:C9JIJ9
PRIDE:C9JIJ9 Ensembl:ENST00000434693 ArrayExpress:C9JIJ9
Bgee:C9JIJ9 Uniprot:C9JIJ9
Length = 436
Score = 146 (56.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 48 SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 107
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 108 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 156
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 157 NMLKPFGHVISTRILRDANGVSRGVG 182
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 113
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 114 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 173
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 174 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 217
Score = 39 (18.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKP 321
P V Q GA++ + PM + +N+ P
Sbjct: 305 PPYVMQPTGAVITPTMDHPMSMQPANMMGP 334
Score = 37 (18.1 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 316 SNLQKPSYNYPISQP 330
SN P+Y+Y S+P
Sbjct: 422 SNEHAPAYSYQQSKP 436
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 103 (41.3 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FV + + +D ++ F ++G ++ K++ ++ G SKGYGFV + +D ++K+ G
Sbjct: 43 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND---VD-VQKIVG 98
Query: 78 ATVE--RMELYVGPFIRR 93
+ + +L +GP IR+
Sbjct: 99 SQIHFHGKKLKLGPAIRK 116
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FV + + +D ++ F ++G ++ K++ ++ G SKGYGFV + +D ++K+ G
Sbjct: 208 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND---VD-VQKIVG 263
Query: 78 ATVE--RMELYVGPFIRR 93
+ + +L +GP IR+
Sbjct: 264 SQIHFHGKKLKLGPAIRK 281
Score = 68 (29.0 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
I+ +DE E+ F + G++ VKI+ G+SKG+
Sbjct: 377 IDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGY 412
Score = 68 (29.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
I+ +DE E+ F + G++ VKI+ G+SKG+
Sbjct: 212 IDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGY 247
Score = 64 (27.6 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
N ++V +D M E + F +G + + I + G SKG+G
Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYG 248
Score = 64 (27.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
N ++V +D M E + F +G + + I + G SKG+G
Sbjct: 370 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYG 413
>UNIPROTKB|Q6XE24 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
EMBL:CH471055 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 HSSP:Q15434 EMBL:AF023259
EMBL:AY236871 EMBL:AY236872 EMBL:AK292789 EMBL:AC012262
EMBL:AC021068 EMBL:AC092795 EMBL:AC092796 EMBL:AC097633
EMBL:AC098650 EMBL:AC099048 EMBL:BC117315 EMBL:BC143521
IPI:IPI00298424 IPI:IPI00472404 IPI:IPI00827856 IPI:IPI00985081
RefSeq:NP_001003792.1 RefSeq:NP_001003793.1 RefSeq:NP_001171182.1
RefSeq:NP_001171183.1 RefSeq:NP_055298.2 UniGene:Hs.221436
ProteinModelPortal:Q6XE24 SMR:Q6XE24 STRING:Q6XE24
PhosphoSite:Q6XE24 DMDM:74762382 PaxDb:Q6XE24 PRIDE:Q6XE24
Ensembl:ENST00000273139 Ensembl:ENST00000383766
Ensembl:ENST00000383767 Ensembl:ENST00000452462
Ensembl:ENST00000456853 GeneID:27303 KEGG:hsa:27303 UCSC:uc003cek.3
UCSC:uc003cel.3 UCSC:uc003cem.3 UCSC:uc010hfq.3 CTD:27303
GeneCards:GC03P029298 HGNC:HGNC:13427 HPA:HPA034719 MIM:605786
neXtProt:NX_Q6XE24 PharmGKB:PA34276 InParanoid:Q6XE24 OMA:QQMTVET
OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 GenomeRNAi:27303 NextBio:50293
ArrayExpress:Q6XE24 Bgee:Q6XE24 CleanEx:HS_RBMS3
Genevestigator:Q6XE24 Uniprot:Q6XE24
Length = 437
Score = 146 (56.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQ 61
S+ NS N +++ L + L ++ +G I S+K ++ + + KGYGFV
Sbjct: 49 SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVD 108
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
+ +P +A A+ L+ V+ + + QE NLY+ NL M E+ L
Sbjct: 109 FDSPAAAQKAVASLKANGVQA----------QMAKQQEQDP-TNLYISNLPISMDEQELE 157
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
FG + S I +DANG S+G G
Sbjct: 158 NMLKPFGHVISTRILRDANGVSRGVG 183
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFGSKVL-YVAR 155
E S NLY++ L T++ L++ +GKI T ++ K+ N KG+G A
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN-QCKGYGFVDFDSPAA 114
Query: 156 AQKK-AERKAI-LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
AQK A KA ++AQ + +++ LY N+ +DE EL+ G + S +I+R
Sbjct: 115 AQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD 174
Query: 212 DRGISKGHCMA-IAQTKRERT--SYLRIMYAKQGPGLASTIFPV 252
G+S+G A + T++ + Y K PG+ + P+
Sbjct: 175 ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPL 218
Score = 39 (18.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKP 321
P V Q GA++ + PM + +N+ P
Sbjct: 306 PPYVMQPTGAVITPTMDHPMSMQPANMMGP 335
Score = 37 (18.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 316 SNLQKPSYNYPISQP 330
SN P+Y+Y S+P
Sbjct: 423 SNEHAPAYSYQQSKP 437
WARNING: HSPs involving 345 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 398 387 0.00093 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 595
No. of states in DFA: 589 (63 KB)
Total size of DFA: 209 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.04u 0.14s 36.18t Elapsed: 00:00:01
Total cpu time: 36.10u 0.15s 36.25t Elapsed: 00:00:01
Start: Tue May 21 05:03:15 2013 End: Tue May 21 05:03:16 2013
WARNINGS ISSUED: 2