BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039806
(398 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 198/488 (40%), Positives = 259/488 (53%), Gaps = 110/488 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SGIGN FVKNL+ +IDN++L +F KFG+I S KVVV+++GKSKGYGFV
Sbjct: 86 MWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--QEGSSFNNLYVKNLDDDMTEE 118
Q+ + E A AIEKL G ++ ++Y G F+R+ DR+ + + NLY+KNLD D+TEE
Sbjct: 146 QFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEE 205
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L EKF EFGKI SLVISKD NG S+GF GSKVLYVAR
Sbjct: 206 ALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVAR 265
Query: 156 AQKKAERKAILRAQFERMRKERAELYKNINDEVD-------EIELKQYFSQCGTISSVKI 208
AQKKAER+ +LR QFE R E+ Y+ N V + +L+++FS CG I+S K+
Sbjct: 266 AQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKL 325
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR +GISKG C +AIAQ K +R + L++ YA+
Sbjct: 326 MRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQ 385
Query: 241 QGPGLASTIFPV----HPTLY---------QRALQVYQAPDFRHGGMIPNGFSPPPPS-- 285
+ GLA PV +P LY R +YQ R G N P P+
Sbjct: 386 RMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQ 445
Query: 286 ----PLFLMAPDSVTQYRG------AMMNGHANFPMPLMLSNLQKP-----SYNYPISQP 330
PL P Q RG GH+ MP +LQ+P S I+Q
Sbjct: 446 PSSIPLMPNTPRQHRQNRGRTNGHIPQGGGHSTAFMP----HLQQPTQPVISPKDSINQQ 501
Query: 331 RAGQAA------ANNLTNGNH-RAAASN---------ENLSSMLVATSPDERKDILGQRL 374
RAGQA + ++ G+ +AASN E LSSML A SP+++K ILG+ L
Sbjct: 502 RAGQAKYVPNGRSYEMSKGSGIPSAASNSVGTGSQGSEMLSSMLAAASPEQQKQILGEHL 561
Query: 375 YPLVKKLK 382
YPLV+K K
Sbjct: 562 YPLVQKQK 569
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEK-- 74
+V +L I + L FS+F + S ++ S G+S YG+V + +P+ A AIE
Sbjct: 15 YVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAKN 74
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P RR S N++VKNL D + L F +FG I
Sbjct: 75 HTMLHGKVIRVMWSHRDPDARR-------SGIGNVFVKNLSDSIDNVRLQAMFQKFGNIL 127
Query: 132 SLVISKDANGTSKGFG----SKVLYVARAQKK-----AERKAILRAQFERMRKER----- 177
S + +G SKG+G Y A +K + K I +F R + +R
Sbjct: 128 SCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVR-KTDRVLPNP 186
Query: 178 ----AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
LY KN++ +V E L++ F + G I+S+ I + + G+S+G
Sbjct: 187 DAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRG 232
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYV-------ARA 156
+LYV +L D+T+ +L + FSEF + S+ I +D ++G S +G YV A
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYG----YVNFISPQDASH 68
Query: 157 QKKAERKAILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISS 205
+A+ +L + R+ + KN++D +D + L+ F + G I S
Sbjct: 69 AIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILS 128
Query: 206 VKIMRTDRGISKGH 219
K++ T+ G SKG+
Sbjct: 129 CKVVVTEDGKSKGY 142
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 175/387 (45%), Positives = 216/387 (55%), Gaps = 81/387 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + AR SG GN FVKNLA +IDN LH +F K+G+I SSKVV+S++GKSKGYGFV
Sbjct: 86 MWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ESA +AIEKL G+TV ++YVG F+R+ DRI G + + NLY+KNLD D+TE
Sbjct: 146 QFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEA 205
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVAR 155
+L EKFS FGKI SL ISKD NG SKG FGSK LYVAR
Sbjct: 206 LLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVAR 265
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ IL QFE RKE+ + LY KNI+D+V + EL+ FS CGTI+SVK+
Sbjct: 266 AQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKV 325
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR D+GISKG C +AIAQ K+ER + L + YA
Sbjct: 326 MRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQRKKERKTQLNLHYAP 385
Query: 241 QGPGLASTIFPVHP-------------TLYQRALQVYQAPDFRHGGMIPNGFSPPPPS-- 285
Q GL + PV P ++Q L +YQ R G N F PP S
Sbjct: 386 QQAGLDGSSTPVIPGGVPPYFYHSVASLMFQSGL-LYQPLGLR-SGWRANDFVPPARSFQ 443
Query: 286 ----PLFLMAPDSVTQYRGAMMNGHAN 308
P+ Q RG+ MNG+ N
Sbjct: 444 HSQVPIVPNFTRHQRQNRGSRMNGNLN 470
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 193/314 (61%), Gaps = 60/314 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ AR SG GN FVKNLA +IDN LH +F K+G+I SSKVV+S +GKSKGYGFV
Sbjct: 86 MWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + ESA +AIEKL G+TV ++YVG F+R+ DRI G + + NLY+KNLD D+TE
Sbjct: 146 QFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEA 205
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVAR 155
+L EKFS FGKI SLVISKD NG SKG FGSK LYVAR
Sbjct: 206 LLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVAR 265
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ IL QFE RKE+ + LY KNI+D+V + EL+ FS CGTI+SVK+
Sbjct: 266 AQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKV 325
Query: 209 MRTDRGISKGH--------------------CM--------AIAQTKRERTSYLRIMYAK 240
MR D+GISKG CM AIAQ K +R + L + YA
Sbjct: 326 MRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAP 385
Query: 241 QGPGLASTIFPVHP 254
Q GL + PV P
Sbjct: 386 QQTGLDGSSTPVIP 399
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 191/486 (39%), Positives = 263/486 (54%), Gaps = 110/486 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR +GIGN +VKNL+ +IDN+ L ++F +FG + S KV ++GKSKG+GFV
Sbjct: 87 MWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--QEGSSFNNLYVKNLDDDMTEE 118
Q+ + +SA AIEKL G+ V ++YVG F++++DR+ + + NLYVKNLD +TEE
Sbjct: 147 QFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
+L EKFSEFGKI S+ I++D G+S+GF GSKVLYV R
Sbjct: 207 LLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGR 266
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQK+AER+ ILR QFE RKE+ + KNI+D+V + EL+++FSQCGTI+S K+
Sbjct: 267 AQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKL 326
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
M+ D+G SKG C +AIAQ K ER + L++ YA+
Sbjct: 327 MKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEERQAQLQLQYAQ 386
Query: 241 QGPGLASTIFPV-----HPTLYQRALQVYQAPDFRHG------GMIPNGFSPPP-----P 284
+ G PV P Y QV+ P + G NGF+PP P
Sbjct: 387 RIAGFHGPSTPVIPGGYTPLYYTAPSQVHPRPGMMYQPLAMRPGWRGNGFAPPSRPVFQP 446
Query: 285 SPLFLMAPDSVTQYRGA--MMNGHANFPMPLMLSNLQKPSYNYPISQP----------RA 332
S L +M P S Q++ MNGH L Q SY +QP RA
Sbjct: 447 SHLPVM-PISQRQHKQGRVRMNGHV-----LPQGGTQSVSYVQQPAQPLTSLKDPSNQRA 500
Query: 333 GQAA------ANNLTNGNHRAAAS----------NENLSSMLVATSPDERKDILGQRLYP 376
GQA +++ G+ +A+ +E LSSML A SPDE+K ILG++LYP
Sbjct: 501 GQAKYVPNGRTCDVSKGSGVLSAAPNSTGPVSQGSEVLSSMLAAASPDEQKQILGEQLYP 560
Query: 377 LVKKLK 382
LV+K K
Sbjct: 561 LVRKHK 566
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 43/231 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEK-- 74
+V L + + +L FS+F + S +V S G+S YG+V + +PE A+ AIE
Sbjct: 16 YVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIETKN 75
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P RR + N+YVKNL + + L E F EFG +
Sbjct: 76 HTPLNGKLMRVMWSHRDPDARR-------NGIGNVYVKNLSESIDNVGLQELFGEFGTVL 128
Query: 132 SLVISKDANGTSKG-----------------------FGSKVLYVARAQKKAERKAILRA 168
S ++ +G SKG G K +YV + KK++R +L +
Sbjct: 129 SCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDR--VLPS 186
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ LY KN++ + E L++ FS+ G I SV I R + G S+G
Sbjct: 187 PDAKY----TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRG 233
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/484 (40%), Positives = 262/484 (54%), Gaps = 105/484 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR S IGN FVKNLA +IDN L +F KFG+I SSKVV+S++GKSKGYGFV
Sbjct: 84 MWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ T ESA AIE+L G V ++YVG F++++DRI G + + NLY+KNLD D++E
Sbjct: 144 QFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISET 203
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
+L EKFS FGKI SL ++KD+NG SKGF GSK+LYVAR
Sbjct: 204 LLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVAR 263
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ IL QFE RKE+ Y KNI+D V + L+ +FS CGTI+S KI
Sbjct: 264 AQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKI 323
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR D+GISKG C +++AQ K +R + L++ YA+
Sbjct: 324 MRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDRQAQLQLQYAQ 383
Query: 241 QGPGLA---STIFP-VHPTLYQ-----------RALQVYQAPDFRHGGMIPNGFSPPP-- 283
Q GLA + I P +P Y RA VYQ R G NG +PP
Sbjct: 384 QIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMALR-PGWRANGSAPPARS 442
Query: 284 --PSPLFLMAPDSVTQYRG--AMMNGHA----NFPMPLMLSNLQKPSYNYPIS-----QP 330
SP +++ ++ Q+R MNGHA N + Q+ S + S Q
Sbjct: 443 FQQSPTPVVSNNNTRQHRQNRGRMNGHAVSQGNTHSGTYMPQAQQASQSAISSRESSTQQ 502
Query: 331 RAGQAAANNLTNGNHR------------AAASNENLSSMLVATSPDERKDILGQRLYPLV 378
R GQA + +G HR + E L SML +P+++K+ILG+ LY LV
Sbjct: 503 RTGQAKY--VPSGRHREMEKGSGLSSSGGSLGPEVLHSMLANATPEQQKEILGEHLYMLV 560
Query: 379 KKLK 382
+K+K
Sbjct: 561 QKIK 564
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 33/226 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +LH FS F + S ++ S GKS YG+V + +P A+ AIE
Sbjct: 13 YVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKN 72
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+T+ + V R D S N++VKNL + + L + F +FG I S +
Sbjct: 73 HSTLNGKAIRV--MWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 137 KDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQFERM 173
+G SKG+ G K +YV + KK++R I R
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDR--ISSGPDTRY 188
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
LY KN++ ++ E L++ FS G I S+ + + G+SKG
Sbjct: 189 ----TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKG 230
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 184/494 (37%), Positives = 257/494 (52%), Gaps = 116/494 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +++AR SGIGN FVKNL+ +I++L L ++F KFG++ SSKV S +GKSKGYGFV
Sbjct: 88 MWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFV 147
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ + ESA AIE L G TV ++YVG F+R++DR+ + NLYVKNLD ++ EE
Sbjct: 148 QFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEE 207
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L EKFSEFGKI+S++IS+D NG S+GF GSKV+Y+AR
Sbjct: 208 HLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIAR 267
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ +LR +E KE+ Y KNI+D+V + EL++ FSQ GTI+S K+
Sbjct: 268 AQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKL 327
Query: 209 MRTDRGISKGH--------------------CM--------AIAQTKRERTSYLRIMYAK 240
MR D+GI+KG CM AIAQ K +R L++ +A+
Sbjct: 328 MRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQ 387
Query: 241 QG---PGLASTIF------------PVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP-- 283
+ PG ++TIF V P + R ++Q R G PN ++ P
Sbjct: 388 RLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLGMRPGWR-PNTYTSPARP 446
Query: 284 ---PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNL 340
PSPL ++ P + Q R G N P+ + +Q SY A +
Sbjct: 447 GFQPSPLPII-PTASRQPR--QNRGKMNGPILSHQNGVQSVSYMQNSQDANQSVVTAKSS 503
Query: 341 TNG----------NHRAAASNEN----------------------LSSMLVATSPDERKD 368
+N N R+ +N+ LSSML ++ PD++K
Sbjct: 504 SNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGDVSQGSQILSSMLASSPPDQQKQ 563
Query: 369 ILGQRLYPLVKKLK 382
ILG+ LYPLV+K K
Sbjct: 564 ILGEHLYPLVQKRK 577
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L FS F + S ++ S G+S YG+V + +P+ A +AIE +
Sbjct: 17 YVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVMN 76
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V R AD + G N++VKNL D + L E F +FG + S ++
Sbjct: 77 HSMLNGRAIRVMWSRRDADARKSG--IGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVA 134
Query: 137 KDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQFERM 173
+G SKG+ G K +YV + +K++R
Sbjct: 135 TSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRV------LANP 188
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ LY KN++ E+ E L++ FS+ G ISS+ I R + G+S+G
Sbjct: 189 DIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRG 234
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERK 163
+LYV +L D+T+ L + FS F + S+ I +D++ G S +G YV +
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYG----YVNFISPQDATN 70
Query: 164 AI------------LRAQFERMRKERAE------LYKNINDEVDEIELKQYFSQCGTISS 205
AI +R + R + + KN++D ++ + L++ F + G + S
Sbjct: 71 AIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLS 130
Query: 206 VKIMRTDRGISKGH 219
K+ +D G SKG+
Sbjct: 131 SKVATSDDGKSKGY 144
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 251/489 (51%), Gaps = 110/489 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR S IGN FVKNL +IDN L IF K+G+I SSKVV S++GKSKGYGFV
Sbjct: 86 MWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + ES+ AIEKL G TV ELYVG F++++DRI G + + NLY+KNLD D++E
Sbjct: 146 QFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEA 205
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L EKFS FGKI SLVI+KD NG SKGF GSK+LYVAR
Sbjct: 206 TLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVAR 265
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ IL QFE +KE+ Y KNI+D V + EL+ +FS CGTI+S KI
Sbjct: 266 AQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKI 325
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR D+GISKG C +A+AQ K +R + L++ YA+
Sbjct: 326 MRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQ 385
Query: 241 -----QGPGLASTIFPVHPTLYQRALQVYQAPD-----FRHGGMIP----NGFSPPP--- 283
GP A P Y + + P ++H + P NGF+PP
Sbjct: 386 QLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSF 445
Query: 284 ---PSPLFLMAPDSVTQYRG-------AMMNGHANFPMPLMLSNLQKP--SYNYPISQPR 331
P P Q RG A N H+ +P + +P S +Q R
Sbjct: 446 QQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLP-QAQQISQPVISSRDSSTQQR 504
Query: 332 AGQAAANNLTNGNHR------------------AAASNENLSSMLVATSPDERKDILGQR 373
GQ A + +G R + +E L S+L +P+++K+ILG+
Sbjct: 505 TGQ--ARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEH 562
Query: 374 LYPLVKKLK 382
LY LV KLK
Sbjct: 563 LYMLVHKLK 571
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + L FS+F + S +V S GKS YG++ + +P+ A+ AIE
Sbjct: 15 YVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKN 74
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+T+ + V R D S+ NL+VKNL + + L + F ++G I S +
Sbjct: 75 NSTLNGKAMRV--MWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVV 132
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
+G SKG+G K LYV + KK++R IL R
Sbjct: 133 TSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDR--ILPGPDARY 190
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
LY KN++ +V E L++ FS G I S+ I + + G+SKG
Sbjct: 191 ----TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKG 232
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKA--- 160
+LYV +L D+++ LV+ FSEF + S+ + KD++ G S +G + +A
Sbjct: 13 SLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIEL 72
Query: 161 ERKAILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + L + R+ R + KN+ + +D L+ F + G I S K++
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVV 132
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRI 236
++ G SKG+ Q + E +S + I
Sbjct: 133 TSEDGKSKGY--GFVQFESEESSKVAI 157
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 195/491 (39%), Positives = 257/491 (52%), Gaps = 118/491 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR + IGN FVKNL +IDN L +F K+G+I SSKVV+S++GKSKGYGFV
Sbjct: 86 MWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + ES+ AIEKL G+TV +LYVG F++++DRI G + + NLY+KNLD D++E
Sbjct: 146 QFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEA 205
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L EKFS FGKI SLVI+KD G SKGF GSK+LYVAR
Sbjct: 206 TLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVAR 265
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ IL QFE RKE+ Y KNI+D V + EL+ +FS CG I+S KI
Sbjct: 266 AQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKI 325
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR D+GISKG C +A+AQ K +R + L++ YA+
Sbjct: 326 MRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQ 385
Query: 241 QGPGL---ASTIFP-VHPTLYQRALQVYQAPDFRHG----------GMIPNGFSPPPPSP 286
Q GL ++ I P +P Y A V R G G NGF+ P S
Sbjct: 386 QVAGLSGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLPMRPGWGANGFALPARS- 444
Query: 287 LFLMAP-----DSVTQYRG--AMMNGHANFPMPLMLSNLQKPSY---NYPISQP------ 330
F +P ++ Q+R +NG+ P+ N +Y ISQP
Sbjct: 445 -FQQSPVPAVSNNTRQHRQNRGRLNGN-----PIAQGNTHSVTYLPQAQQISQPVISSST 498
Query: 331 --RAGQAAANNLTNGNHR-----------------AAASNENLSSMLVATSPDERKDILG 371
R GQA L +G R + +E L SML +P+++K+ILG
Sbjct: 499 QQRTGQAKY--LPSGRQRDMEKGSGSSSSGSNSGRGSQGSEMLHSMLAGAAPEQQKEILG 556
Query: 372 QRLYPLVKKLK 382
+ LY LV KLK
Sbjct: 557 EHLYMLVHKLK 567
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 36/260 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + L FS F + S +V S GKS YG+V + +P+ A+ AIE
Sbjct: 15 YVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKN 74
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+T+ + V R D ++ NL+VKNL + + L + F ++G I S +
Sbjct: 75 NSTLNGKAMRV--MWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVV 132
Query: 137 KDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQFERM 173
+G SKG+ G K LYV + KK++R IL R
Sbjct: 133 MSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDR--ILPGPDARY 190
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTS 232
LY KN++ +V E L++ FS G I S+ I + + G+SKG +
Sbjct: 191 ----TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAK- 245
Query: 233 YLRIMYAKQGPGLASTIFPV 252
R M A G L S I V
Sbjct: 246 --RAMEAMNGSKLGSKILYV 263
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERK 163
+LYV +L ++++ LV+ FS+F + S+ + KD++ G S +G YV + +
Sbjct: 13 SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYG----YVNFVSPQDAIR 68
Query: 164 AI------------LRAQFERMRKERAE------LYKNINDEVDEIELKQYFSQCGTISS 205
AI +R + R + + KN+ + +D L+ F + G I S
Sbjct: 69 AIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILS 128
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K++ ++ G SKG+ Q + E +S + I
Sbjct: 129 SKVVMSEDGKSKGY--GFVQFESEESSNVAI 157
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 175/471 (37%), Positives = 244/471 (51%), Gaps = 95/471 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SG+GN FVKNL IDN+ L ++FSKFGDI S KV + +G S+GYGFV
Sbjct: 176 MWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVARNDDGTSRGYGFV 235
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q++ ESA AIE L + E +L+V FI++++R + NLY+KNLDDDMTEE+
Sbjct: 236 QFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSANNDDKYTNLYMKNLDDDMTEEL 295
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARA 156
+ KFS+FG + S+ I K +GTSKGF GSK LYVARA
Sbjct: 296 IKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARA 355
Query: 157 QKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAERK L+ E R E + +Y KNI+D VD+ L++ F + G I+SVKIM
Sbjct: 356 QKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIM 415
Query: 210 RTDRGISKG------------HC----------------MAIAQTKRERTSYLRIMYAKQ 241
R D+GISKG C +AIAQ K +R + L +A+
Sbjct: 416 RDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRKEDRKARLEQRFAEL 475
Query: 242 GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPN--GFSPPP------------PSPL 287
+ PV PT Y + + F G P+ GF PP PSP
Sbjct: 476 A-TMVGAASPVIPTGYPHVYFAHPSTHFPQG---PSRQGFMYPPMGLGQEWRQNVFPSPH 531
Query: 288 FL------MAPDSVTQY---RGAMMNGHANFPMPL-MLSNLQKPSYNYPISQPRAGQAA- 336
+ + P++ QY RG M FP + +S+ Q +S+ + G A
Sbjct: 532 NIQQIHAPLMPNTPRQYRNNRGRMTGNMMTFPHTVNYVSHAQTAKDFMSMSRQQFGHAKY 591
Query: 337 --ANNLTNG---NHRAAAS--NENLSSMLVATSPDERKDILGQRLYPLVKK 380
A+ +T+G +H S N+ +S+L A PD+++++LG RLYPLV++
Sbjct: 592 IPADVMTSGLAIHHSDPVSSVNDPFTSLLAAAPPDQQRNMLGNRLYPLVER 642
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L L FSK G + S +V + S YG+V Y + A+ A+EK+
Sbjct: 105 YVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKMN 164
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V R D + G N++VKNL+D + IL E FS+FG I S ++
Sbjct: 165 HSLILDKPIRVMWSNRDPDARRSG--VGNVFVKNLNDHIDNVILQELFSKFGDILSCKVA 222
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
++ +GTS+G+G + L+VA KK+ER A ++ +
Sbjct: 223 RNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSANNDDKYTNL 282
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN++D++ E +K FSQ G + SVKIM+ D G SKG
Sbjct: 283 ------YMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKG 321
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ-----KKA 160
LYV +L +D EE L + FS+ G +TS+ + +D +S V Y ++A +K
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 161 ERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
IL M R KN+ND +D + L++ FS+ G I S K+ R
Sbjct: 164 NHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVAR 223
Query: 211 TDRGISKGH 219
D G S+G+
Sbjct: 224 NDDGTSRGY 232
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/405 (40%), Positives = 208/405 (51%), Gaps = 100/405 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVK--------------------NLASTIDNLKLHQIFSKFGD 40
MWS + +AR SGIGN FVK NL+ +IDN++L +F KFG+
Sbjct: 86 MWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSIDNVRLQAMFQKFGN 145
Query: 41 IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--Q 98
I S KVVV+++GKSKGYGFVQ+ + E A AIEKL G ++ ++Y G F+R+ DR+
Sbjct: 146 ILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPN 205
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------ 146
+ + NLY+KNLD D+TEE L EKF EFGKI SLVISKD NG S+GF
Sbjct: 206 PDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAK 265
Query: 147 -----------GSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVD------ 189
GSKVLYVARAQKKAER+ +LR QFE R E+ Y+ N V
Sbjct: 266 RALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNV 325
Query: 190 -EIELKQYFSQCGTISSVKIMRTDRGISKGH---C------------------------- 220
+ +L+++FS CG I+S K+MR +GISKG C
Sbjct: 326 NDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLY 385
Query: 221 MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV----HPTLY---------QRALQVYQAP 267
+AIAQ K +R + L++ YA++ GLA PV +P LY R +YQ
Sbjct: 386 VAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGLMYQPL 445
Query: 268 DFRHGGMIPNGFSP------PPPSPLFLMAPDSVTQYRGAMMNGH 306
R G N P P P PL P Q RG NGH
Sbjct: 446 GLRTGWRANNLIPPTRPAFQPSPIPLMPNTPRQHRQNRG-RTNGH 489
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 53/246 (21%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEK-- 74
+V +L I + L FS+F + S ++ S G+S YG+V + +P+ A AIE
Sbjct: 15 YVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAKN 74
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK--------------------NL 111
L G + M + P RR S N++VK NL
Sbjct: 75 HTMLHGKVIRVMWSHRDPDARR-------SGIGNVFVKVYLFAVTSIIDAELYFLVCLNL 127
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----SKVLYVARAQKK-----AER 162
D + L F +FG I S + +G SKG+G Y A +K +
Sbjct: 128 SDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDG 187
Query: 163 KAILRAQFERMRKERA---------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K I +F R + +R LY KN++ +V E L++ F + G I+S+ I + +
Sbjct: 188 KQIYAGKFVR-KTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDE 246
Query: 213 RGISKG 218
G+S+G
Sbjct: 247 NGMSRG 252
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 231/460 (50%), Gaps = 94/460 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +AR +G+GN FVKNL +I N L +F KFG+I S KV ++GKS+GYGFV
Sbjct: 98 MWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVATFEDGKSRGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ ++A AIEKL TV E+YVG F+++ DR + + N+Y+KNLD D+ E++L
Sbjct: 158 QFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
EKFSEFGKI SL I+KD NG KG FGSK LYV RAQ
Sbjct: 218 REKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQ 277
Query: 158 KKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KKAER+ +LR QF+ +E+ + +Y KNIN V E EL+++FSQCGTI+S K+M
Sbjct: 278 KKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMC 337
Query: 211 TDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAKQG 242
++G SKG C +A AQ K +R L++ +
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQFGNCV 397
Query: 243 ------------PGLASTIF--PVHPTLYQRALQVYQA--PDFRHGGMI----PNGFSPP 282
PG + ++ HP + VYQ+ P ++ MI PN +
Sbjct: 398 EGGGSSSSASFIPGTYAPLYYTNTHPGM------VYQSYPPTWKSANMISSSYPNSQALT 451
Query: 283 PPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTN 342
PS + AP + Q R ++ +A +P N+ + + P+S+ + Q
Sbjct: 452 YPS-VVGNAPRKIKQNRKGKLDRNAVSYVP----NVYQSTQMLPLSRDFSNQQLNRTYGR 506
Query: 343 GNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
G + S +V K +LG+ LYPLV+KL+
Sbjct: 507 GKEMKKPIQQRQSETIVM-----EKQLLGELLYPLVEKLE 541
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 35/227 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L+ F++F + S ++ + G+S YG+ + + + A AIEK
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEKKN 86
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V +R D + G N++VKNL + +T +L + F +FG I S ++
Sbjct: 87 HSLLNGKMIRVMWSVREPDARRNG--VGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA 144
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
+G S+G+G K +YV + KK +R +
Sbjct: 145 TFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRA--------KA 196
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
++ +Y KN++ +V+E L++ FS+ G I S+ I + + G+ KG+
Sbjct: 197 EEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGY 243
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG-SKVLYVARAQKKAER 162
+LYV +L +TE IL + F+EF +TS+ + KDA+ G S +G + L A E+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEK 84
Query: 163 K--AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K ++L + R+ E KN+ + + L+ F + G I S K+
Sbjct: 85 KNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA 144
Query: 210 RTDRGISKGH 219
+ G S+G+
Sbjct: 145 TFEDGKSRGY 154
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 246/473 (52%), Gaps = 96/473 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SG+GN FVKNL+S++DN L ++FSKFGD+ S KV +++G S+GYGFV
Sbjct: 195 MWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFV 254
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+++ ESA +AI L G+ +L+V FI++++R F NLY+K+LDDD+TEE+
Sbjct: 255 QFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLYMKHLDDDITEEL 314
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ KFS+FG I S+ I K +G+S GFG SK LYVARA
Sbjct: 315 VKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARA 374
Query: 157 QKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK ERK L+ E R E + +Y KNI+DEVD+ L+ F + G I+S K+M
Sbjct: 375 QKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSAKVM 434
Query: 210 RTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAKQ 241
R D+GIS+G C +AI Q K ER + L+ +A+
Sbjct: 435 RDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKEERKAKLQQHFAQL 494
Query: 242 G--PGLASTIFPV-HPTLY--QRALQVYQAPDFRHGGMIPN-GFS--------PPPP--- 284
G A+++ P +P +Y + + Q P RHG + P G S PP P
Sbjct: 495 ARMVGPANSMIPTGYPQVYFAHPSTHIPQGPP-RHGFVYPPMGLSHEWRPSMFPPAPNLQ 553
Query: 285 ---SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP----ISQPR------ 331
SP+ +P RG M G P+P + + ++ P +S PR
Sbjct: 554 QIHSPVMPNSPRHYRSNRGRM--GGNMMPLPHAVHTMNYMTHPQPAKEFMSLPRQRFNHP 611
Query: 332 ---AGQAAANNLT-NGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
+ AN+L + + + N++ S+ L + P E+K++LG RLYPLV++
Sbjct: 612 KYFSNDVMANSLAIHQSDPVSTMNDSFSNYLASAPPAEQKNLLGNRLYPLVER 664
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L + FSK G + S +V +S YG+V Y + A+ A++KL
Sbjct: 124 YVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKLN 183
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ V + V R D + G N++VKNL + L E FS+FG + S ++
Sbjct: 184 HSLVLDKPIRVMWSNRDPDARRSG--VGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVA 241
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
K+ +GTS+G+G + L+VA KK+ER A +F +
Sbjct: 242 KNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNL 301
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
K+++D++ E +K FSQ G+I SVKIM+ G S G
Sbjct: 302 ------YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLG 340
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQ-----KK 159
LYV +L +D+ EE L E FS+ G +TS+ + +D N TS+ V Y +RA K
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRD-NATSRSLRYGYVNYFSRADAVVALDK 181
Query: 160 AERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+L M R KN++ VD L++ FS+ G + S K+
Sbjct: 182 LNHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVA 241
Query: 210 RTDRGISKGH 219
+ + G S+G+
Sbjct: 242 KNEDGTSRGY 251
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 241/476 (50%), Gaps = 102/476 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SG+GN FVKNL +++DN L ++FSKFGD+ S KV +++G S+GYGFV
Sbjct: 116 MWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+++ ESA +AI L G+ +L+V FI++++R F NLY+K+LDDD+TEE+
Sbjct: 176 QFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLYMKHLDDDITEEL 235
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ KFS+FG I S+ I + +G+S GFG SK LYVARA
Sbjct: 236 VKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARA 295
Query: 157 QKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK ERK L+ E R E + +Y KNI+DEVD+ L+ F++ G I+S K+M
Sbjct: 296 QKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVM 355
Query: 210 RTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAKQ 241
R D+GIS+G C +AI Q K ER + L+ +A+
Sbjct: 356 RDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFAQ- 414
Query: 242 GPGLASTIFPVHPTLYQRALQVY---------QAPDFRHGGMIP----------NGFSPP 282
LA + P + + QVY Q P RHG + P N F
Sbjct: 415 ---LARMVGPTNSMIPTGYPQVYFAHPNAHIPQGPP-RHGFVYPPMGLSHEWRPNMFPSA 470
Query: 283 PPSPLFL--MAPDSVTQYRG--AMMNGHANFPMPLMLSNLQKPSYNYP----ISQPR--- 331
P P M P+S YR M G+ P+P + + ++ P +S PR
Sbjct: 471 PNLPQIHSPMMPNSPRHYRSNRGRMGGNM-MPLPHAVHAMNYVTHAQPTKEFMSMPRQRF 529
Query: 332 ------AGQAAANNLT-NGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
+ AN L + + + N++ SS L + P E+K++LG RLYPLV++
Sbjct: 530 NHSKYFSNDVMANGLAIHQSDPVSTMNDSFSSYLASAPPAEQKNLLGNRLYPLVER 585
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L FSK G + S +V +S YG+V Y + A+ A++KL
Sbjct: 45 YVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKLN 104
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ V + V R D + G N++VKNL++ + L E FS+FG + S ++
Sbjct: 105 HSLVLDKPIRVMWSNRDPDARRSG--VGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVA 162
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
K+ +GTS+G+G + L+VA KK+ER A +F +
Sbjct: 163 KNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNL 222
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
K+++D++ E +K FSQ G I SVKIMR G S G
Sbjct: 223 ------YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLG 261
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQ-----KK 159
LYV +L +D+ EE L + FS+ G +TS+ + +D N TS+ V Y +RA K
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRD-NATSRSLRYGYVNYFSRADAVMALDK 102
Query: 160 AERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+L M R KN+N+ VD L++ FS+ G + S K+
Sbjct: 103 LNHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVA 162
Query: 210 RTDRGISKGH 219
+ + G S+G+
Sbjct: 163 KNEDGTSRGY 172
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 234/471 (49%), Gaps = 95/471 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SG+GN FVKNL +DN+ L ++F KFGDI S KV +++G S+GYGFV
Sbjct: 112 MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q++ ESA +I+ L + +L+V FI++++R + NLY+KNLDDD+TEE+
Sbjct: 172 QFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEEL 231
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ KFS++G + S+ I K +GTSKGFG SK LYVARA
Sbjct: 232 IKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARA 291
Query: 157 QKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAERK L+ E R E + +Y KNINDEV + L++ F++ G I+S KIM
Sbjct: 292 QKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIM 351
Query: 210 RTDRGISKG------------HC----------------MAIAQTKRERTSYLRIMYAKQ 241
R ++GISKG C +AIAQ K ER + L +A+
Sbjct: 352 RDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAEL 411
Query: 242 GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP--NGFSPPP---------------- 283
+ +T PV PT Y Q Y A H P GF PP
Sbjct: 412 ATMVGATS-PVIPTGYP---QFYFAHPSTHLPQSPGRQGFMYPPIGISQEWRHNMFPSSH 467
Query: 284 -----PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNY-PISQPRAGQAA- 336
SP+ P RG M +F + +P+ + +S+ R A
Sbjct: 468 NIQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQRFSHAKY 527
Query: 337 ------ANNLTNGNHRAAAS-NENLSSMLVATSPDERKDILGQRLYPLVKK 380
AN L + + +S N+ +++L P+E+K++LG RLYPLV++
Sbjct: 528 IPNDVMANGLAIHHGDSISSLNDAFNNLLATAPPEEQKNMLGNRLYPLVER 578
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L ++F K G + S +V S YG+V Y + A A+EKL
Sbjct: 41 YVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLN 100
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V R D + G N++VKNL+D + L E F +FG I S ++
Sbjct: 101 HSLILDKPIRVMWSNRDPDARRSG--VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
K+ +GTS+G+G + L+VA KK+ER ++ +
Sbjct: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNL 218
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN++D++ E +K FSQ G + SVKIM+ D G SKG
Sbjct: 219 ------YMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKG 257
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQ-----KK 159
LYV +L + + EE L+E F + G +TS+ + +D N TS V Y+++A +K
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRD-NATSNSLRYGYVNYLSQADAAIALEK 98
Query: 160 AERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
IL M R KN+ND VD + L++ F + G I S K+
Sbjct: 99 LNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
Query: 210 RTDRGISKGH 219
+ + G S+G+
Sbjct: 159 KNEDGTSRGY 168
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 234/471 (49%), Gaps = 95/471 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +AR SG+GN FVKNL +DN+ L ++F KFGDI S KV +++G S+GYGFV
Sbjct: 112 MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q++ ESA +I+ L + +L+V FI++++R + NLY+KNLDDD+TEE+
Sbjct: 172 QFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEEL 231
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ KFS++G + S+ I K +GTSKGFG SK LYVARA
Sbjct: 232 IKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARA 291
Query: 157 QKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAERK L+ E R E + +Y KNINDEV + L++ F++ G I+S KIM
Sbjct: 292 QKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIM 351
Query: 210 RTDRGISKG------------HC----------------MAIAQTKRERTSYLRIMYAKQ 241
R ++GISKG C +AIAQ K ER + L +A+
Sbjct: 352 RDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAEL 411
Query: 242 GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP--NGFSPPP---------------- 283
+ +T PV PT Y Q Y A H P GF PP
Sbjct: 412 ATMVGATS-PVIPTGYP---QFYFAHPSTHLPQSPGRQGFMYPPIGISQEWRHNMFPSSH 467
Query: 284 -----PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNY-PISQPRAGQAA- 336
SP+ P RG M +F + +P+ + +S+ R A
Sbjct: 468 NIQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQRFSHAKY 527
Query: 337 ------ANNLTNGNHRAAAS-NENLSSMLVATSPDERKDILGQRLYPLVKK 380
AN L + + +S N+ +++L P+E+K++LG RLYPLV++
Sbjct: 528 IPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKNMLGNRLYPLVER 578
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L ++F K G + S +V S YG+V Y + A A+EKL
Sbjct: 41 YVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLN 100
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V R D + G N++VKNL+D + L E F +FG I S ++
Sbjct: 101 HSLILDKPIRVMWSNRDPDARRSG--VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
K+ +GTS+G+G + L+VA KK+ER ++ +
Sbjct: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNL 218
Query: 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN++D++ E +K FSQ G + SVKIM+ D G SKG
Sbjct: 219 ------YMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKG 257
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQ-----KK 159
LYV +L + + EE L+E F + G +TS+ + +D N TS V Y+++A +K
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRD-NATSNSLRYGYVNYLSQADAAIALEK 98
Query: 160 AERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
IL M R KN+ND VD + L++ F + G I S K+
Sbjct: 99 LNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
Query: 210 RTDRGISKGH 219
+ + G S+G+
Sbjct: 159 KNEDGTSRGY 168
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 234/473 (49%), Gaps = 102/473 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN LH F FG I S K+ Q+G+SKGYGFV
Sbjct: 111 MWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
+ T E+A AIEK+ G + +++V F++R+DR+ + F N++VKNLD +M EE
Sbjct: 170 HFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEE 229
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
+ E FS FG IT++VI KD N SKGF GS+ +YV R
Sbjct: 230 EINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGR 289
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ ILR QFE R E+ A LY KN++D +D+ LKQ FS+ G I+S K+
Sbjct: 290 AQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKV 349
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR ++GISKG C +A+AQ K R + L+ YA+
Sbjct: 350 MRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQ 409
Query: 241 QGPGL--------ASTIFPVH--------PTLYQRALQVYQA---PDFRHGGMIPNG--- 278
+ GL A+ PV+ P + QR +YQ P +R G + P G
Sbjct: 410 RMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPVMRPGWRTGPLAPPGRPS 469
Query: 279 FSPPPPSPLFLM---APDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQA 335
P PP L P S++ Y +M M + + +PR G A
Sbjct: 470 LQPLPPYALVRNKKGVPLSISSYIVGVMQQRPRQAMKYVNN-----------GRPRDGAA 518
Query: 336 AANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIF 388
A + ++ SM+ A SP ++K +LG+RL+PLV+ TH F
Sbjct: 519 AGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLGERLFPLVR-----THQF 566
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 44/231 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L T+ +L IFS+ G + S +V +S GYG+V YS+ A+ A+E L
Sbjct: 40 YVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEALN 99
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G T+ M + P R+ S N+++KNLD+ + + L + F FG I
Sbjct: 100 YTPINGKTIRIMWSHRDPSTRK-------SGVGNIFIKNLDESIDNKALHDTFIAFGPIL 152
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-R 167
S I+ +G SKG+G K ++VA+ K+++R A
Sbjct: 153 SCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGE 211
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+F + KN++ E+ E E+ ++FS G I++V IM+ + SKG
Sbjct: 212 TKFTNV------FVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKG 256
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 230/455 (50%), Gaps = 84/455 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +AR +G+GN FVKNL ++ N L +F KFG+I S KV ++GKS+GYGFV
Sbjct: 98 MWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ ++A AI+ L V E+YVG F+++ DR++ + NLY+KNLD D++E++L
Sbjct: 158 QFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
EKF+EFGKI SL I+KD N +G FGSK LYV RAQ
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Query: 158 KKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KKAER+ +LR QF+ +E+ + +Y KN+N V E EL+++FSQCGTI+S K+M
Sbjct: 278 KKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMC 337
Query: 211 TDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY---- 238
++G SKG C +AIAQ K +R L++ +
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV 397
Query: 239 --------AKQGPGLASTIF--PVHPTL-YQRALQVYQAPDFRHGGMIPNGFSPPPPSPL 287
A PG + ++ HP + YQ ++++ + G PN + P P+
Sbjct: 398 EARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYPLMWKSANMI-GSSYPNSEAVTYP-PM 455
Query: 288 FLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRA 347
AP Q R ++ +A +P N+ + + P+S+ + Q + G
Sbjct: 456 VANAPSKNRQNRIGKLDRNAVSYVP----NVYQSTQMLPLSRDFSKQQHSRTYGRGKEMK 511
Query: 348 AASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
+ + S + +LG+ L+PLV+KL+
Sbjct: 512 KSIQQRQSETV-----GMEMQLLGELLHPLVEKLE 541
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 106/227 (46%), Gaps = 35/227 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L+ F++F + S ++ + G+S YG+ + + + A AIEK
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V +R D + G N++VKNL + +T +L + F +FG I S ++
Sbjct: 87 NSLLNGKMIRVMWSVRAPDARRNG--VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
+G S+G+G K +YV + KK +R +
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--------KP 196
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
++ LY KN++ +V E L++ F++ G I S+ I + + + +G+
Sbjct: 197 EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGY 243
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L +TE IL + F+EF +TS+ + KDA +G S +G + L A E+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 163 K--AILRAQFER-MRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K ++L + R M RA KN+ + V L+ F + G I S K+
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 210 RTDRGISKGH 219
+ G S+G+
Sbjct: 145 TLEDGKSRGY 154
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 161/246 (65%), Gaps = 28/246 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + +++AR SG GN FVKNLA++IDN+ LH +F K+G+I SSK+ S++GKSKG+G++
Sbjct: 89 MWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYI 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--QEGSSFNNLYVKNLDDDMTEE 118
Q+ + ESA AI+K+ G+TV ++YVG FIR+++R + F NLYVKNLD +TE+
Sbjct: 149 QFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEK 208
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVAR 155
L EKFS FGKI SL I KD NG SKG FGSK+LYVAR
Sbjct: 209 HLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVAR 268
Query: 156 AQKKAERKAILRAQF--ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
AQKK ER+ IL F + ++ + +Y KNI+ V + EL+ +FS CG + S K+MR D
Sbjct: 269 AQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDD 328
Query: 213 RGISKG 218
+G SKG
Sbjct: 329 KGTSKG 334
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 173/405 (42%), Gaps = 80/405 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
S P+ +A+ + N +VKNL + L + FS FG I S + + G+SKG+GFV Y
Sbjct: 185 SLPDLDAKFT---NLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNY 241
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADR--------IQEGSSF--NNLYVKNLD 112
+P+ A A+E + G+ LYV ++ +R +++G +N+YVKN+D
Sbjct: 242 DSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNID 301
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----SKVLYVARAQK--KAERKAIL 166
+ +E L + FS G++ S + +D GTSKGFG S V+ ++ E
Sbjct: 302 TSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGELSCFE 361
Query: 167 RAQFERMRKER---------------AELYKNINDEVDEIELKQYFSQCGTISSVKIMRT 211
+ R ER + KN + +V I +S+K+M
Sbjct: 362 SVSHQGNRLERFGPVSFFAWICISSTMKFEKNAHHDVPIIL---------AYASIKLMLY 412
Query: 212 DRGISKGHCM--------AIAQTKRERTSYLRIMYAKQGPGLA----STIFPVH---PTL 256
G CM AQ K +R L+ M+A + GLA + + P P +
Sbjct: 413 ATG-----CMFHGKPLYVDFAQKKEDRKRLLQHMHAPKLEGLAGHSSTAVIPGARPPPFI 467
Query: 257 YQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP-LML 315
Y+ + VY P G NGF+ P + Q + +++ +NF P +++
Sbjct: 468 YRTSGVVYHPP--LGSGWSANGFASPSI---------GLQQSKASII---SNFGKPHMII 513
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVA 360
K + N S +GQ A N+ +G + +SS + A
Sbjct: 514 LGETKDNTNSKESITHSGQ--AKNVASGCQQETQGKSGISSAMQA 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 33/226 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L S + + +L++ FS+F + S++V S GKS YG+V S+ + A+ AIE
Sbjct: 18 YVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELKN 77
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++ + V R AD + G N++VKNL + L + F ++G I S I+
Sbjct: 78 HSSLNGKVIRVMWLSRDADARKSGK--GNVFVKNLAASIDNVGLHDLFQKYGNILSSKIA 135
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKA-ILRAQFER 172
+ +G SKGFG K +YV + +K+ER L A+F
Sbjct: 136 RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTN 195
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ KN++ V E L + FS G I S+ I + + G SKG
Sbjct: 196 L------YVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKG 235
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKA 164
LYV +L D+T+ L + FSEF + S + KD A G S +G YV + + +A
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYG----YVNLSSHQEAIRA 72
Query: 165 I-----------------LRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
I L + + + ++ KN+ +D + L F + G I S
Sbjct: 73 IELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSS 132
Query: 207 KIMRTDRGISKG 218
KI R++ G SKG
Sbjct: 133 KIARSEDGKSKG 144
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 240/498 (48%), Gaps = 124/498 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN LH F FG I S K+ Q+G+SKGYGFV
Sbjct: 112 MWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
+ T E+A AIEK+ G + +++V F++R+DR+ + F N++VKNLD +M EE
Sbjct: 171 HFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEE 230
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
+ E FS FG IT++VI KD N SKGF GS+ +YV R
Sbjct: 231 EIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGR 290
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKKAER+ ILR QFE R E+ A LY KN++D +D+ LKQ FS+ G I+S K+
Sbjct: 291 AQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKV 350
Query: 209 MRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAK 240
MR ++GISKG C +A+AQ K R + L+ YA+
Sbjct: 351 MRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQ 410
Query: 241 QGPGL--------ASTIFPVH--------PTLYQRALQVYQA---PDFRHGGMIPNGFSP 281
+ GL A+ PV+ P + QR +YQ P +R G + P G
Sbjct: 411 RMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPVMRPGWRTGPLAPPGRPS 470
Query: 282 PPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQA------ 335
P P + + P++ Q R P+ + LQ P QP+A Q
Sbjct: 471 LQPLPPYALVPNAQRQQRQVRNRPPGGQPL-AQIPQLQIP-------QPQAIQPGGYKEN 522
Query: 336 ----------AANNLTNGNHRAAAS---------------NENLSSMLVATSPDERKDIL 370
A + NG R A+ ++ SM+ A SP ++K +L
Sbjct: 523 GRNQQQRPRQAMKYVNNGRPRDGAAAGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLL 582
Query: 371 GQRLYPLVKKLKVITHIF 388
G+RL+PLV+ TH F
Sbjct: 583 GERLFPLVR-----THQF 595
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 44/231 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L T+ +L IFS+ G + S +V +S GYG+V YS+ A+ A+E L
Sbjct: 41 YVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEALN 100
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G T+ M + P R+ S N+++KNLD+ + + L + F FG I
Sbjct: 101 YTPINGKTIRIMWSHRDPSTRK-------SGVGNIFIKNLDESIDNKALHDTFIAFGPIL 153
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-R 167
S I+ +G SKG+G K ++VA+ K+++R A
Sbjct: 154 SCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGE 212
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+F + KN++ E+ E E+K++FS G I++V IM+ + SKG
Sbjct: 213 TKFTNV------FVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKG 257
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 159/496 (32%), Positives = 224/496 (45%), Gaps = 128/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG I S KV G+SKG+GFV
Sbjct: 103 MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFV 162
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ T E+AL AIEKL G + +++VGPF+R+ +R + E + FNN++VKNL + +EE
Sbjct: 163 QFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE 222
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D G SK FG K YV +
Sbjct: 223 DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGK 282
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+++FE+ KE A+ Y KN++D +D+ +LK+ F+ GTI+S K+
Sbjct: 283 AQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKV 342
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 343 MRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQ 402
Query: 237 ----------------MYAKQGPGLASTIF--PVHPTL--------YQRALQVYQAPDFR 270
MY GPG+ IF PT+ YQ+ L P
Sbjct: 403 MQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRP--- 459
Query: 271 HGGMIPNGFSP----------------------PPPSPLF--LMAPDSVTQYRGAMMNGH 306
GG +PN F P P PL M P YR G
Sbjct: 460 GGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRV-YRYPPGRGL 518
Query: 307 ANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDER 366
+ PMP + + Y PR + H L+S L +PD++
Sbjct: 519 PDLPMPGVAGGMFSVPYEMGGMPPR----------DAVHPQPVPVGALASALANATPDQQ 568
Query: 367 KDILGQRLYPLVKKLK 382
+ +LG+ LYPLV++L+
Sbjct: 569 RTMLGENLYPLVEQLE 584
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 39/246 (15%)
Query: 4 TPNSEARLSGIGNA--------FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-S 54
PNS A + G A +V +L + + +L+ +F++ G + S +V + S
Sbjct: 10 VPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRS 69
Query: 55 KGYGFVQYSTPESALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK 109
GYG+V YS P A A++ L G + M + P +R+ S N+++K
Sbjct: 70 LGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRK-------SGSGNIFIK 122
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK------ 163
NLD + + L + FS FG I S ++ D++G SKGFG A KA K
Sbjct: 123 NLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Query: 164 --------AILRAQFERMRKERAE----LYKNINDEVDEIELKQYFSQCGTISSVKIMRT 211
LR Q E+ + KN+ + E +LK F + G I+SV +MR
Sbjct: 183 NDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD 242
Query: 212 DRGISK 217
G SK
Sbjct: 243 GEGKSK 248
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 159/496 (32%), Positives = 224/496 (45%), Gaps = 128/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG I S KV G+SKG+GFV
Sbjct: 103 MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFV 162
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ T E+AL AIEKL G + +++VGPF+R+ +R + E + FNN++VKNL + +EE
Sbjct: 163 QFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE 222
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D G SK FG K YV +
Sbjct: 223 DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGK 282
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+++FE+ KE A+ Y KN++D +D+ +LK+ F+ GTI+S K+
Sbjct: 283 AQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKV 342
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 343 MRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQ 402
Query: 237 ----------------MYAKQGPGLASTIF--PVHPTL--------YQRALQVYQAPDFR 270
MY GPG+ IF PT+ YQ+ L P
Sbjct: 403 MQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRP--- 459
Query: 271 HGGMIPNGFSP----------------------PPPSPLF--LMAPDSVTQYRGAMMNGH 306
GG +PN F P P PL M P YR G
Sbjct: 460 GGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRV-YRYPPGRGL 518
Query: 307 ANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDER 366
+ PMP + + Y PR + H L+S L +PD++
Sbjct: 519 PDLPMPGVAGGMFSVPYEMGGMPPR----------DAVHPQPVPVGALASALANATPDQQ 568
Query: 367 KDILGQRLYPLVKKLK 382
+ +LG+ LYPLV++L+
Sbjct: 569 RTMLGENLYPLVEQLE 584
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 39/246 (15%)
Query: 4 TPNSEARLSGIGNA--------FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-S 54
PNS A + G A +V +L + + +L+ +F++ G + S +V + S
Sbjct: 10 VPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRS 69
Query: 55 KGYGFVQYSTPESALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK 109
GYG+V YS P A A++ L G + M + P +R+ S N+++K
Sbjct: 70 LGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRK-------SGSGNIFIK 122
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK------ 163
NLD + + L + FS FG I S ++ D++G SKGFG A KA K
Sbjct: 123 NLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Query: 164 --------AILRAQFERMRKERAE----LYKNINDEVDEIELKQYFSQCGTISSVKIMRT 211
LR Q E+ + KN+ + E +LK F + G I+SV +MR
Sbjct: 183 NDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD 242
Query: 212 DRGISK 217
G SK
Sbjct: 243 GEGKSK 248
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 210/422 (49%), Gaps = 54/422 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
++S + R SG+GN F+KNL IDN L F++FG I S+KV + +G SKGYGFV
Sbjct: 111 LYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS-FNNLYVKNLDDDMTEEI 119
Q+ T E+A AI+ + G + ++YVGPF RRA+R G + FNN+YVKNL +++++E
Sbjct: 171 QFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEK 230
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L EKF+E G +TS VI +D G SKGFG K V RA
Sbjct: 231 LREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRA 290
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A L+A+F++ R+ER E LY KN+ D D+ +L++ F + GTI+S ++M
Sbjct: 291 QKKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVM 350
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA------LQV 263
R G+S+G + E T + M K P++ L QR LQ
Sbjct: 351 RDASGVSRGSAFVAFSSPDEATRAVTEMNGKM-----VGAKPLYVALAQRKEERRMRLQA 405
Query: 264 YQAPDFRHGGMIPNGFSP--PPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSN 317
A GM P G +P PPP +P++ P + +
Sbjct: 406 QFAQRMPGAGM-PGGMAPYMPPPGVPGAPMYYGQPPPAGHAGQGVPGAQRGRGGRGGPAG 464
Query: 318 LQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPL 377
+ N + A N A L+S L A +PD+++ ILG+ LYPL
Sbjct: 465 GRGQRQNMRYNAAAAMPMPPMPAEAANPMAI-----LASQLSAAAPDQQRMILGEALYPL 519
Query: 378 VK 379
++
Sbjct: 520 IE 521
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 196/379 (51%), Gaps = 78/379 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL TIDN LH FS FG I S KV V G+SKGYGFV
Sbjct: 102 MFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ESAL AIEK+ G + +++VGPF+RR +R Q G S FNN+YVKNL ++ TE+
Sbjct: 162 QFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTED 221
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F +G I+S V+ +D++G SK FG K YV R
Sbjct: 222 DLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGR 281
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA+FE+ RKER E Y KN++D VD+ +L++ F+ GTI+S K+
Sbjct: 282 AQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKV 341
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR +G S+G +A+AQ K ER + L+ +A+
Sbjct: 342 MRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQ 401
Query: 241 QGPGLASTIFPVHPTLYQRALQVYQ-----APDFRHGGMIPNGFSPPPPSPLFLMAPDSV 295
+ +++ P PT +L +Y +P + G P+G P P P +
Sbjct: 402 ----MRTSVSPAVPT----SLPMYHPGPGMSPQMPYYGQHPSG--PIPLQPAAFGYQPQI 451
Query: 296 TQYRGAMMN---GHANFPM 311
+ GA G+AN P+
Sbjct: 452 IRPGGAQFPNYIGYANVPL 470
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 41/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + +L+++F++ G + S +V +S GY +V Y++ + A A+E
Sbjct: 31 YVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELLN 90
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 91 FSVLNGNPIRIMFSHRDPSIRK-------SGTANIFIKNLDKTIDNKALHDTFSAFGGIL 143
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERA 178
S ++ D +G SKG+G +V Q+++ AI + F R R+ER
Sbjct: 144 SCKVAVDGSGQSKGYG----FVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVR-RQERD 198
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+ + E +LK F GTISS +MR G SK
Sbjct: 199 QSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSK 247
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 182/333 (54%), Gaps = 47/333 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL IDN L+ F++FG+I S+KV +G+SKGYGFV
Sbjct: 106 MYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQGQSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ T E A AIEK+ G + ++YVGPF +R +R ++FNN+YVKNL + +TEE L
Sbjct: 166 QFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKL 225
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
E F +FG +TS+V+ KDA G SKGFG K V RA
Sbjct: 226 REVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDGYDKIEDKAWVVCRA 285
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK+ER+A L+A+F+ R+ER E LY KN+ D VD+ +L++ F++ GTI+S ++M
Sbjct: 286 QKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVM 345
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA------LQV 263
R G S+G + E T + M K + P++ L QR LQ
Sbjct: 346 RDTAGASRGSAFVAFSSADEATRAVTEMNGKM-----AGQKPLYVALAQRKEDRRLRLQA 400
Query: 264 YQAPDFRHGGMIPN----GFSPPPPSPLFLMAP 292
A G +PN G PPP +P++ P
Sbjct: 401 QFAQRQVAAGGMPNMGPYGM-PPPGAPMYYGQP 432
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 21/136 (15%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY +LD TE L E FS G + S+ + +D T + G YV Q
Sbjct: 30 SATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLI-TRRSLG--YAYVNFQQGNDA 86
Query: 162 RKAILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQCGTI 203
+AI F+ +RK KN++ E+D L F+Q G I
Sbjct: 87 ARAIDALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNI 146
Query: 204 SSVKIMRTDRGISKGH 219
S K+ +G SKG+
Sbjct: 147 VSAKVATDLQGQSKGY 162
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 224/472 (47%), Gaps = 95/472 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + AR SG N F+KNL ID+ L+ FS FG+I S KV G+SKG+GFV
Sbjct: 98 MYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + ESA +AI+KL G + +++VGPF+R+ DR G+ FNN++VKNL D MTE
Sbjct: 158 QFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEA 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+G ITS V+ +D +G SKGFG K YV +
Sbjct: 218 DLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGK 277
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ Q E++ KE + Y KN++D V + EL + FS+ GTI+S K+
Sbjct: 278 AQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR GIS+G +A+AQ K +R + L+ +++
Sbjct: 338 MRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQ 397
Query: 241 QGPGL----ASTIFPVHPT---------LYQRA-----------LQVYQAPDFRHGGMIP 276
P S P++P LY +A Q + P R GG P
Sbjct: 398 SRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQAAFGYQQHFVPGMRPGGA-P 456
Query: 277 NGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYP----ISQP 330
N + P +RG+ P+PLM + + Y YP +
Sbjct: 457 NFYV---PLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQMLPRGHVYRYPSGSNMQNI 513
Query: 331 RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
+ +T G + + + L+S L +P++++ +LG+ LYPLV KL+
Sbjct: 514 QLAGVPGGMVTYGIGQQMPT-QALASALANATPEQQRTMLGEALYPLVDKLE 564
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L +++ +L+ +F++ + S ++ V +Q+ S GYG+V +S A AI+
Sbjct: 27 YVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQ--SLGYGYVNFSNAHDAAKAIDV 84
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L + + + IR + G++ N+++KNLD + + L + FS FG I S
Sbjct: 85 LNFTPLNGKIIRIMYSIRDPSARKSGAA--NVFIKNLDKAIDHKALYDTFSAFGNILSCK 142
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ DA+G SKG G K ++V +K +R++ L
Sbjct: 143 VATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSG--- 199
Query: 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
K KN+ D + E +L++ F + G I+S +MR G SKG
Sbjct: 200 --TKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKG 244
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 174/330 (52%), Gaps = 47/330 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++DN LH FS FG+I S KV +G+SKGYGFV
Sbjct: 115 MWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFV 174
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
+ ESA AIEK+ G +E ++YVGPF+RR++R + F N++VKNLD+ ++++
Sbjct: 175 HFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDE 234
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ F+E G + S +I +D G SKGFG K LYV RA
Sbjct: 235 VKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRA 294
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A+LRA+FE +R ER Y KN++D++D+ L+ FSQ GTI+S K+M
Sbjct: 295 QKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVM 354
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR-------ALQ 262
G S+G + E T + M + G P++ L QR Q
Sbjct: 355 VDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGK-----PIYVALAQRRDVRRAQLEQ 409
Query: 263 VYQ----APDFRHGGMIPNGFSPPPPSPLF 288
YQ P G M P F P P+F
Sbjct: 410 QYQQRVAMPPGPRGPMAPGMFPPGGAPPMF 439
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------SKVLYVARAQ 157
++LYV +LD D+TE L E FS+ G + S+ + +DA T + G + VL A A+
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAV-TRRSLGYAYVNYNSVLDPAAAE 96
Query: 158 KKAER---KAILRAQFERMRKERAELY----------KNINDEVDEIELKQYFSQCGTIS 204
+ ++ ++ M R + KN++ VD L FS G I
Sbjct: 97 RALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNIL 156
Query: 205 SVKIMRTDRGISKGH 219
S K+ + +G SKG+
Sbjct: 157 SCKVAQDLKGESKGY 171
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 216/470 (45%), Gaps = 84/470 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL IDN L+ FS+FG+I S+KV +G SKGYGFV
Sbjct: 94 MYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFV 153
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q++ E+A AI+K+ G + ++YVGPF RR +R ++FNN+YVKNL + + E+ L
Sbjct: 154 QFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNLHESVDEDKL 213
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
E F GK+TS+VI KD G SKGFG K V RA
Sbjct: 214 KEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRA 273
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A L+A+F+ R+ER E LY KN+ D VD+ +L++ F++ GTI+S ++M
Sbjct: 274 QKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVM 333
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA------LQV 263
R G S+G + E T + M K +A T P++ L QR LQ
Sbjct: 334 RDASGASRGSAFVAFSSADEATRAVTEMNGK----MAGTK-PLYVALAQRKEDRRMRLQA 388
Query: 264 YQA---------------------PDFRHGGMIPNG-FSPPPPSPLFLMAP----DSVTQ 297
A P + G P G PP P P F P
Sbjct: 389 QFAQRAVANGGMPGMPYGMPPPGVPGAMYYGQPPPGVMGPPQPQPGFGFQPIMPPGPGRP 448
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAA--------- 348
+AN PMP + A N+ N
Sbjct: 449 MGPGGPMQYANMPMPQRGGMPGQRGRGGRGGAQGGRGARGQNMRGFNQNMPPAPPAPNMP 508
Query: 349 -------ASNENLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKG 391
++ E L++ L S D+++ +LG+ LYPLV ++ + + G
Sbjct: 509 PAPEAPMSAVEQLAAQLPNASADQQRMLLGEALYPLVDAVEPASSAKITG 558
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 180/348 (51%), Gaps = 70/348 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH F+ FG I S KV G+SKGYGFV
Sbjct: 98 MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ESA AIEK+ G + +++VGPF+RR +R Q G S FNN+YVKNL D T++
Sbjct: 158 QFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F +G I+S V+ +D G SK FG K YV R
Sbjct: 218 ELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGR 277
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA+FE+ RKER E Y KN++D +D+ +L++ FS+ GTI S K+
Sbjct: 278 AQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR +G S+G +A+AQ K ER + L+ +A+
Sbjct: 338 MRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQ 397
Query: 241 QGPGLASTIFPVHPTLYQRALQVYQAPDFRHG-GMIPNGFSPPPPSPL 287
+ P + P PT +L +Y G GM G PP P PL
Sbjct: 398 RTP-----VGPAVPT----SLPMYHPAGPGMGPGMSYYGQHPPGPIPL 436
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 41/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L ST+ +L++IFS+ G + S +V +S GY +V Y+ + A A+E L
Sbjct: 27 YVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELLN 86
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M + P IR+ S N+++KNLD + + L + F+ FG I
Sbjct: 87 FNAVNGKPIRIMFSHRDPSIRK-------SGTANIFIKNLDKSIDNKALHDTFAAFGTIL 139
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERA 178
S ++ D +G SKG+G +V Q+++ + AI + F R R+ER
Sbjct: 140 SCKVATDPSGQSKGYG----FVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVR-RQERD 194
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+ D + ELK+ F G ISS +MR + G SK
Sbjct: 195 QSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSK 243
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L+ ++E L E FS+ G++ S+ + +D T + G + AQ
Sbjct: 25 SLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLI-TRRSLGYAYVNYNNAQDATRALE 83
Query: 165 IL----------RAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+L R F +RK A ++ KN++ +D L F+ GTI S K+
Sbjct: 84 LLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKV 143
Query: 209 MRTDRGISKGH 219
G SKG+
Sbjct: 144 ATDPSGQSKGY 154
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 218/449 (48%), Gaps = 108/449 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN FVKNL +IDN LH +FS +G I S K+ + SKG+GFV
Sbjct: 89 MFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFV 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ T ++A AIEK+ G T+ +L+VGPF+RR +R S FNN++VKNL + T+E L
Sbjct: 149 QFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASKFNNVFVKNLSEITTDEDL 208
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
+ F FG I+S V+ K+ +G SK FG K LYV+RAQ
Sbjct: 209 QKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQ 268
Query: 158 KKAERKAILRAQFERMRKERAE-----LY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
KK ER+A L+A+FE RK+ + LY KN++D +D+ +LK FS G ++S K+MR
Sbjct: 269 KKNEREAELKAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRD 328
Query: 212 DRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAKQGP 243
G SKG +A+AQ K ER + L +A +GP
Sbjct: 329 PLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQFASRGP 388
Query: 244 GLASTIFPVHPTLYQRALQ--VYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
FP P LY Q +Y P M+P P+ ++ P+ V Q G
Sbjct: 389 ----VNFP-PPPLYSAVGQQLLYSRP----APMVPQQ-----PAGFAMVRPN-VGQMPGF 433
Query: 302 M----MNGHANFPMPLML--------SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA 349
GHA P + SN + P+Y GN+ A
Sbjct: 434 FPPQRQQGHARVPFQQFMQRESTFHGSNSRTPAY-------------------GNNSFLA 474
Query: 350 SNENLSSMLVATSPDERKDILGQRLYPLV 378
L+S L + +P++++ +LG++LYPLV
Sbjct: 475 V---LASHLASATPEQQRIMLGEQLYPLV 500
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L +++ ++ IF + G++ S ++ K S GY +V Y+ + A AIE+L
Sbjct: 18 YVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIEELN 77
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G V M Y P IR+ S NL+VKNLD + + L + FS +GKI
Sbjct: 78 FMPVNGKPVRIMFSYRDPSIRK-------SGSGNLFVKNLDKSIDNKALHDLFSPYGKIL 130
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--- 179
S I+ D + SKG G A A K + F R R+ER
Sbjct: 131 SCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVR-RQERDPPAS 189
Query: 180 -----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ + +L++ F G ISS +M+ G SK
Sbjct: 190 KFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSK 232
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 183/355 (51%), Gaps = 83/355 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH F+ FG+I S KV G+SKGYGFV
Sbjct: 98 MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ESA +AIEK+ G + +++VGPF+RR +R Q G S FNN+YVKNL D T++
Sbjct: 158 QFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F +G I+S V+ +D +G SK FG K YV R
Sbjct: 218 ELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGR 277
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA+FE+ RKER E Y KN++D VD+ ++++ F++ GTI+S K+
Sbjct: 278 AQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR +G SKG +A+AQ K ER L+ +A+
Sbjct: 338 MRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRKEERRMRLQAAFAQ 397
Query: 241 Q----GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPN----GFSPPPPSPL 287
GP + +++ HP AP GM P G PP P PL
Sbjct: 398 MRTHVGPAVPTSLPMYHPG----------AP-----GMGPQMSYYGQHPPGPIPL 437
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 41/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + +L+++FS+ G + S +V +S GY +V Y+ + A A+E L
Sbjct: 27 YVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALELLN 86
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M + P IR+ S N+++KNLD + + L + F+ FG I
Sbjct: 87 FTGVNGKPIRIMFSHRDPSIRK-------SGTANIFIKNLDKSIDNKALHDTFAAFGNIL 139
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERA 178
S ++ DA+G SKG+G +V Q+++ + AI + F R R+ER
Sbjct: 140 SCKVATDASGQSKGYG----FVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVR-RQERD 194
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+ D + ELK+ F G ISS +MR + G SK
Sbjct: 195 QAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSK 243
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 158/496 (31%), Positives = 224/496 (45%), Gaps = 129/496 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 108 MYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFV 167
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ T E+A AIEKL G + ++YVGPF+R+ +R G + FNN++VKNL + T++
Sbjct: 168 QFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDD 227
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS V+ +D +G SK FG K YV +
Sbjct: 228 ELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGK 287
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ FS GTI+S K+
Sbjct: 288 AQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKV 347
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR G+S+G + +AQ K +R + L+
Sbjct: 348 MRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQ 407
Query: 237 ---------------MYAKQGPGLASTIF---------PVHPTL-YQRALQVYQAPDFRH 271
MY GPG+ IF P P YQ+ L P R
Sbjct: 408 MRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQL----VPGMRP 463
Query: 272 GGM-IPNGFSP----------------------PPPSPLF--LMAPDSVTQYRGAMMNGH 306
GG +PN F P P PL M P YR G
Sbjct: 464 GGAPVPNFFVPMVQQGQQGQRPGGRRGGGVQQSQQPVPLMPQQMLPRGRV-YRYPPGRGM 522
Query: 307 ANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDER 366
+ PMP + + Y+ P + + + G L+S L SP+++
Sbjct: 523 PDGPMPGVAGGMYSVPYDVG-GMPIRDASLSQQIPIG---------ALASHLANASPEQQ 572
Query: 367 KDILGQRLYPLVKKLK 382
+ +LG+ LYPLV++L+
Sbjct: 573 RTMLGENLYPLVEQLE 588
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + + +L+ +F++ G + S +V +S GYG+V YS P+ A A++
Sbjct: 37 YVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLN 96
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 97 FTPLNNRPIRIMYSHRDPSIRK-------SGQGNIFIKNLDKAIDHKALHDTFSSFGNIL 149
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERK--------------AILRAQFERMRKER 177
S ++ D +G SKG+G A +KA K LR Q +R
Sbjct: 150 SCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDR 209
Query: 178 AE----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A+ KN+++ + ELK+ F + GTI+S +MR G SK
Sbjct: 210 AKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSK 253
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD ++T+ L + F++ G++ S+ + +D T + G + + Q A
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLT-TRRSLGYGYVNYSNPQDAARALD 93
Query: 165 IL----------------RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKI 208
+L R R + KN++ +D L FS G I S K+
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKV 153
Query: 209 MRTDRGISKGH 219
G SKG+
Sbjct: 154 AVDGSGQSKGY 164
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 107/482 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN ++KNL IDN LH FS FG I S KV G+S GYGFV
Sbjct: 103 MYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFV 162
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ ESA +AI+KL G + ++YVGPF+R+ +R + ++FNN+YVKNL + TEE
Sbjct: 163 QFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEE 222
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F E+G ITS V+ +D NG S+ FG K YV +
Sbjct: 223 DLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGK 282
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE + LY KN++D + + +LK+ FS+ GTI+S K+
Sbjct: 283 AQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKV 342
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+S+G +A+AQ K ER + L+ Y++
Sbjct: 343 MRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQ 402
Query: 241 QGPGLASTI---FPVHPT---------LYQRALQVYQAPDFRHG-------GMIPNGFSP 281
P +A I P++P Y + P G GM PN F P
Sbjct: 403 IRPAMAPPIGPRMPIYPPGTPGIGHQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVP 462
Query: 282 PPPSPLFLMAPDSVTQYRGAMMNGHANF----PMPLMLSNL--QKPSYNYPISQ-----P 330
++ P Q +G P+P+M + + Y YP + P
Sbjct: 463 -------MVQPGQQAQRPSGRRSGAGAVQPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVP 515
Query: 331 RAG----------QAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
AG +G L++ L P++++ +LG+ LYPLV +
Sbjct: 516 MAGLPGGMLPVPYDMGGMPFRDGAFSQPVQTGALATALANAMPEQQRTLLGENLYPLVDQ 575
Query: 381 LK 382
L+
Sbjct: 576 LE 577
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L + +L+ +F++ G + S +V + S GYG+V Y+ A AIE L
Sbjct: 32 YVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVLN 91
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M Y P IR+ S N+Y+KNLD + + L + FS FG I
Sbjct: 92 FTPVNGKPIRIMYSYRDPTIRK-------SGTGNIYIKNLDKAIDNKALHDTFSAFGSIL 144
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S ++ D+ G S G+G K +YV +K ER+ AI +
Sbjct: 145 SCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDK 204
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A F + KN+++ E +LK+ F + GTI+S +MR G S+
Sbjct: 205 ATFNNV------YVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSR 248
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 156/272 (57%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG I S KV + G+SKGYGFV
Sbjct: 103 MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFV 162
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESAL AIEKL G + ++YVGPF+R+ +R + + S FNN++VKNL + TEE
Sbjct: 163 QFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEE 222
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FSEFG +TS+V+ +DA+G S+ FG K YV +
Sbjct: 223 DLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGK 282
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ F+ GTI+S K+
Sbjct: 283 AQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV 342
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR GIS+G T E + L M K
Sbjct: 343 MRDPNGISRGSGFVAFSTPDEASRALVEMNGK 374
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 37/200 (18%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
S N FVKNL+ T L++ FS+FG + S V+ +GKS+ +GFV + + A A
Sbjct: 205 SKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARA 264
Query: 72 IEKLQGATVERMELYVGPFIRRADR-----------IQEGSS---FNNLYVKNLDDDMTE 117
++ L G V+ E YVG ++++R ++E + NLY+KNLDD + +
Sbjct: 265 VDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGD 324
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L E F+ FG ITS + +D NG S+G G SK LYVA
Sbjct: 325 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 384
Query: 155 RAQKKAERKAILRAQFERMR 174
AQ+K +R+A L+AQF ++R
Sbjct: 385 LAQRKEDRRARLQAQFSQIR 404
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + + +L+ IF++ G + S +V +S GYG+V YS P+ A A++
Sbjct: 32 YVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLN 91
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 92 FTPLNGKPIRVMYSHRDPSIRK-------SGAGNIFIKNLDKAIDHKALHDTFSAFGSIL 144
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-R 167
S ++ D++G SKG+G K +YV +K ER ++ +
Sbjct: 145 SCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDK 204
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
++F + KN+++ E +L + FS+ GT++S+ +MR G S+
Sbjct: 205 SKFNNV------FVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSR 248
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 19/138 (13%)
Query: 100 GSSF--NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
G++F +LYV +LD ++T+ L + F++ G++ S+ + +D T + G + + Q
Sbjct: 23 GANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLT-TRRSLGYGYVNYSNPQ 81
Query: 158 KKAERKAIL----------RAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCG 201
A +L R + +RK A KN++ +D L FS G
Sbjct: 82 DAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 141
Query: 202 TISSVKIMRTDRGISKGH 219
+I S K+ G SKG+
Sbjct: 142 SILSCKVALDSSGQSKGY 159
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 172/314 (54%), Gaps = 61/314 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL IDN LH F FG+I S KV G+SKGYGFV
Sbjct: 78 MFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGYGFV 137
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ ESA AI+K+ G V +++VGPF+RR +R Q G FNN++VKNL + T++ L
Sbjct: 138 QFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNG-KFNNVFVKNLGESTTDDEL 196
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
E F FGKITS V+ +D++G SK FG K YV RAQ
Sbjct: 197 KEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQ 256
Query: 158 KKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK+ER+A LRA++E+ RKER + Y KN++D+VD+ L++ F+ G+I+S K+MR
Sbjct: 257 KKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMR 316
Query: 211 TDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK-Q 241
+G SKG +A+AQ K ER + L+ +A+ +
Sbjct: 317 DAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQMR 376
Query: 242 GP-GLASTIFPVHP 254
P G+A+T+ HP
Sbjct: 377 SPVGVATTMPMYHP 390
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 38/226 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + +L+ +F++ G + S +V +S GY +V Y+ + A A+E L
Sbjct: 7 YVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELLN 66
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G V M + P IR+ S N+++KNLD + + L + F FG I
Sbjct: 67 FTPVNGKAVRIMFSHRDPSIRK-------SGTANIFIKNLDRAIDNKALHDTFVSFGNIL 119
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERA 178
S ++ D+NG SKG+G +V Q+++ + AI + F R R+ER
Sbjct: 120 SCKVATDSNGQSKGYG----FVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVR-RQERE 174
Query: 179 E-------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+ + + ELK+ F G I+S +MR G SK
Sbjct: 175 QNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSK 220
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 159/490 (32%), Positives = 223/490 (45%), Gaps = 116/490 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ++IDN LH F+ FG + S KV + G+SKGYGFV
Sbjct: 109 MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A +AI++L G + ++YVG FIRR +R Q S F N+YVKNL + T+E
Sbjct: 169 QFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + F +G ITS + KD NG S+ FG +VLYV
Sbjct: 229 DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVG 288
Query: 155 RAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVK 207
RAQ+KAER+A L+A+ E+ R R A LY KN++D + +LK FS+ GTI+S K
Sbjct: 289 RAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCK 348
Query: 208 IMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYA 239
+M G SKG +A+AQ K ER ++L+ +A
Sbjct: 349 VMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFA 408
Query: 240 K-QGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPS------------- 285
+ + PG + + P LY +G P GF PP P+
Sbjct: 409 QIRAPGGMAPL-PAGIPLYHPGAPRLAPQQLYYGQGTP-GFMPPQPAGFSFQQQILPGMR 466
Query: 286 ---------PLFLMAPDSVTQYRGAMMNG-----------HANFP-----MP-------- 312
P L + Q G NG H N MP
Sbjct: 467 PGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQMLHRNSNQGFRYMPNGRNGMDP 526
Query: 313 -LMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILG 371
L+ L P P +G AA N N R A + L+S L + +P+ ++ +LG
Sbjct: 527 SLVPHGLMGPMMPMPFDG--SGVTAA---PNDNQRPGALSTTLASALASATPENQRMMLG 581
Query: 372 QRLYPLVKKL 381
+ LYPLV++L
Sbjct: 582 EHLYPLVERL 591
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 100 GSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
G F N LYV +L+ ++ EE L + FS+ +I S+ + +D S G + A AQ
Sbjct: 29 GGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSS-LGYAYVNFANAQ 87
Query: 158 KKAERKAIL----------RAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCG 201
+ +L R F + +RK KN++ +D L F+ G
Sbjct: 88 DASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFG 147
Query: 202 TISSVKIMRTDRGISKGH 219
T+ S K+ G SKG+
Sbjct: 148 TVLSCKVALDSSGQSKGY 165
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 223/491 (45%), Gaps = 117/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ++IDN LH F+ FG + S KV + G+SKGYGFV
Sbjct: 109 MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A +AI++L G + ++YVG FIRR +R Q S F N+YVKNL + T+E
Sbjct: 169 QFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + F +G ITS + KD NG S+ FG +VLYV
Sbjct: 229 DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVG 288
Query: 155 RAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVK 207
RAQ+KAER+A L+A+ E+ R R A LY KN++D + +LK FS+ GTI+S K
Sbjct: 289 RAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCK 348
Query: 208 IMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYA 239
+M G SKG +A+AQ K ER ++L+ +A
Sbjct: 349 VMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFA 408
Query: 240 K-QGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPS------------- 285
+ + PG + + P LY +G P GF PP P+
Sbjct: 409 QIRAPGGMAPL-PAGIPLYHPGAPRLAPQQLYYGQGTP-GFMPPQPAGFSFQQQILPGMR 466
Query: 286 ---------PLFLMAPDSVTQYRGAMMNG------------HANFP-----MP------- 312
P L + Q G NG H N MP
Sbjct: 467 PGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQQMLHRNSNQGFRYMPNGRNGMD 526
Query: 313 --LMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDIL 370
L+ L P P +G AA N N R A + L+S L + +P+ ++ +L
Sbjct: 527 PSLVPHGLMGPMMPMPFDG--SGVTAA---PNDNQRPGALSTTLASALASATPENQRMML 581
Query: 371 GQRLYPLVKKL 381
G+ LYPLV++L
Sbjct: 582 GEHLYPLVERL 592
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 100 GSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
G F N LYV +L+ ++ EE L + FS+ +I S+ + +D S G + A AQ
Sbjct: 29 GGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSS-LGYAYVNFANAQ 87
Query: 158 KKAERKAIL----------RAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCG 201
+ +L R F + +RK KN++ +D L F+ G
Sbjct: 88 DASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFG 147
Query: 202 TISSVKIMRTDRGISKGH 219
T+ S K+ G SKG+
Sbjct: 148 TVLSCKVALDSSGQSKGY 165
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 156/272 (57%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG I S KV + G+SKGYGFV
Sbjct: 25 MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFV 84
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESAL AIEKL G + ++YVGPF+R+ +R + + S FNN++VKNL + TEE
Sbjct: 85 QFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEE 144
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FSEFG +TS+V+ +DA+G S+ FG K YV +
Sbjct: 145 DLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGK 204
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ F+ GTI+S K+
Sbjct: 205 AQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV 264
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR GIS+G T E + L M K
Sbjct: 265 MRDPNGISRGSGFVAFSTPDEASRALVEMNGK 296
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 37/200 (18%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
S N FVKNL+ T L++ FS+FG + S V+ +GKS+ +GFV + + A A
Sbjct: 127 SKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARA 186
Query: 72 IEKLQGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTE 117
++ L G V+ E YVG ++++R ++ F NLY+KNLDD + +
Sbjct: 187 VDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGD 246
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L E F+ FG ITS + +D NG S+G G SK LYVA
Sbjct: 247 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 306
Query: 155 RAQKKAERKAILRAQFERMR 174
AQ+K +R+A L+AQF ++R
Sbjct: 307 LAQRKEDRRARLQAQFSQIR 326
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 215/448 (47%), Gaps = 88/448 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 86 MWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAGNSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA++AI K+ G + +++VG FI R DR +E F N+Y+KN D+
Sbjct: 146 HFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELGEKAKYFTNVYIKNFGDEFD 205
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK+TS + +G S+GFG K L+V
Sbjct: 206 DEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFV 265
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ LR +FE+M+ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 266 GRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSA 325
Query: 207 KIMRTDRGISKGH----C-------------------------MAIAQTKRERTSYLRIM 237
K+M T+ G +KG C +A+AQ K +R + L
Sbjct: 326 KVM-TEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALAQRKEDRKAQLASQ 384
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y ++ G+ R Q+ Q F+ GG P F P P P P + Q
Sbjct: 385 YMQRMAGM-------------RMQQMGQM--FQPGG--PGYFMPAPIQPQRFYTPAQMAQ 427
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAA---ASNENL 354
+R P P P+ P SQ A G + A E L
Sbjct: 428 FRATPRWSAQPQPRPGFKFT---PAMRNPPSQGSLPSNAMGGSAAGGMQQALVVQGQEPL 484
Query: 355 S-SMLVATSPDERKDILGQRLYPLVKKL 381
+ SML + +P+++K +LG+RL+PL++++
Sbjct: 485 TASMLASAAPNDQKQMLGERLFPLIQRM 512
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L +++TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 69
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ +R + KN++ +D + FS G I S
Sbjct: 70 LDSMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSC 129
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 130 KVAQDEAGNSKGY 142
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL + IDN L++ F+ FG + S KV V G+SKGYGF+
Sbjct: 107 MFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFI 166
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E A AI +L G V E+YVGPF+RR +RI+ S F N+YVKNL + ++E
Sbjct: 167 QFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDE 226
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FS +G ITS ++ KD NG S+GFG KV YV R
Sbjct: 227 DLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGR 286
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+K ER+A L+A+FE+ R R A LY KN+ D +DE LK+ FS+ G+I+S K+
Sbjct: 287 AQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKV 346
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
M +G+SKG T E + L M K
Sbjct: 347 MLDQQGLSKGSGFVAFSTPEEASRALSEMNGK 378
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L +IFS +G I S+ V+ Q GKS+G+GFV + +P+SA A+EKL
Sbjct: 213 NVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKL 272
Query: 76 QGATVERMELYVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEILV 121
G T YVG R+ +R E S + NLY+KNL D + EE L
Sbjct: 273 NGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLK 332
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E FSEFG ITS + D G SKG G K LYVA AQ+
Sbjct: 333 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQR 392
Query: 159 KAERKAILRAQFERMR 174
+ ER A L+A F +++
Sbjct: 393 REERMARLQAHFSQIQ 408
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 41/230 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIE--- 73
+V +L + +L +FS+ + S++V Q G S GY +V +S P+ A A+E
Sbjct: 36 YVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVLN 95
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P RR S N+++KNLD + + L E F+ FG +
Sbjct: 96 FTPLNGKPIRIMFSHRDPTTRR-------SGHANVFIKNLDTKIDNKALYETFASFGPVL 148
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERA 178
S ++ D NG SKG+G ++ ++ + AI R F R R ER
Sbjct: 149 SCKVAVDNNGQSKGYG----FIQFENEEDAQSAINRLNGMLVNDREVYVGPFVR-RLERI 203
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E KN+++ + +LK+ FS G I+S +M+ G S+G
Sbjct: 204 EANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRG 253
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 170/312 (54%), Gaps = 43/312 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
++S + R SG+GN F+KNL IDN L F++FG I S+KV + G SKGYGFV
Sbjct: 106 LYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS-FNNLYVKNLDDDMTEEI 119
Q+ T E+A AI+ + G + ++YVGPF RRADR +G + FNN+YVKNL +++++E
Sbjct: 166 QFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEK 225
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L EKF+E G +TS VI KD G SKGFG K V RA
Sbjct: 226 LREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRA 285
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A L+A+FE R+ER E LY KN+ + D+ +L++ F++ GTI+S ++M
Sbjct: 286 QKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVM 345
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDF 269
R G S+G + E T + M K P++ L QR + P
Sbjct: 346 RDASGASRGSAFVAFSSPDEATRAVTEMNGKM-----VGAKPLYVALAQRK----EEP-- 394
Query: 270 RHGGMIPNGFSP 281
H G G+ P
Sbjct: 395 -HAGRWHAGYGP 405
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +L+ +TE L EKFS G + S+ + +D T + G + + A
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLI-TRRSLGYAYVNFQSSSDAAHAI 90
Query: 164 AILRAQFERMRKERAELY-----------------KNINDEVDEIELKQYFSQCGTISSV 206
+L Q + R LY KN++ +D L F+Q GTI+S
Sbjct: 91 DVLNFQVINGKPIRV-LYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSA 149
Query: 207 KIMRTDRGISKGH 219
K+ G SKG+
Sbjct: 150 KVAMDSAGNSKGY 162
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 221/483 (45%), Gaps = 120/483 (24%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG GN F+KNL +ID LH+ FS FG I S K+ G+SKGYGFVQY + E+A
Sbjct: 123 RKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQ 182
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEF 127
AI+KL G + ++YVG F+R+ DR E S FNN+YVKNL D +E+ L + F E+
Sbjct: 183 TAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEY 242
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G ITS+V+ +DA+G SK FG K YV +AQKK+ER+
Sbjct: 243 GTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREV 302
Query: 165 ILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
L+++FE+ KE+ + Y KN++D +D+ +LK+ FS+ GTI+S K+MR GIS+
Sbjct: 303 ELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISR 362
Query: 218 GHC----------------------------MAIAQTKRERTSYLRI------------- 236
G +A+AQ K ER + L+
Sbjct: 363 GSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPS 422
Query: 237 ------MYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG-------GMIPNGFSPPP 283
MY+ PG+ +F Y +A AP G GM P G
Sbjct: 423 MGPRMPMYSPGAPGMGQQLF------YGQAPPAMIAPQAGFGYQQQLVPGMRPGGG---- 472
Query: 284 PSPLFLM-------APDSVTQYRGAMMNGHANFPMPLMLSNLQKPS--YNYP-------I 327
P P F M RGA P+P+M L Y +P +
Sbjct: 473 PMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDV 532
Query: 328 SQPRAGQA---AANNLTNGNHRAAASNE-----NLSSMLVATSPDERKDILGQRLYPLVK 379
+ P G N+ R AA + L+S L D+++ +LG+ LYPLV
Sbjct: 533 TMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVD 592
Query: 380 KLK 382
+L+
Sbjct: 593 QLE 595
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 37/206 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
+SE + N +VKNL+ + L + F ++G I S V+ +GKSK +GFV + P
Sbjct: 210 DSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENP 269
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNL 111
E A A++ L G + E YVG ++++R ++ S F NLYVKNL
Sbjct: 270 EDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNL 329
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
DD + +E L E FSE+G ITS + +D +G S+G G S
Sbjct: 330 DDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVS 389
Query: 149 KVLYVARAQKKAERKAILRAQFERMR 174
K LYVA AQ+K ER+A L+AQF +MR
Sbjct: 390 KPLYVALAQRKEERRARLQAQFSQMR 415
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 29/223 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L+ +F++ G + S +V G+S GYG+V YS + A AI+ L
Sbjct: 43 YVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLN 102
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + V + R D S N+++KNLD + + L E FS FG I S I+
Sbjct: 103 FTPLNNKTIRVS--VSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIA 160
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERAEL--- 180
DA+G SKG+G +V ++A + AI + F R + +E+
Sbjct: 161 TDASGQSKGYG----FVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKT 216
Query: 181 ------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN++D E +L++ F + GTI+SV +MR G SK
Sbjct: 217 KFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSK 259
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD +T+ L + F++ G++ S+ + +D + G S G+G YV + ++ +
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYG----YVNYSNQQDATR 96
Query: 164 AI------------LRAQFERM----RKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
AI +R R RK A KN++ +D L + FS GTI S
Sbjct: 97 AIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIIS 156
Query: 206 VKIMRTDRGISKGH 219
KI G SKG+
Sbjct: 157 CKIATDASGQSKGY 170
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 149/482 (30%), Positives = 223/482 (46%), Gaps = 107/482 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN ++KNL IDN LH FS FG+I S KV G+S GYGFV
Sbjct: 103 MYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFV 162
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ ESA +AI+KL G + ++YVGPF+RR +R + + FNN+YVKNL + TEE
Sbjct: 163 QFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEE 222
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F E+G ITS V+ +D +G S+ FG K YV +
Sbjct: 223 DLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGK 282
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ QFE+ KE + LY KN++D + + +LK+ FS+ GTI+S K+
Sbjct: 283 AQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKV 342
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+SKG +A+AQ K ER + L+ +++
Sbjct: 343 MRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQ 402
Query: 241 QGPGLASTIFPVHPTLYQRALQVYQAPDFRHG-------------------GMIPNGFSP 281
P +A + P P + Q + G GM PN F P
Sbjct: 403 MRPAMAPAVGPRMPMYPHGTPGIGQQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVP 462
Query: 282 PPPSPLFLMAPDSVTQYRGAMMNGHANF----PMPLMLSNL--QKPSYNYPISQ-----P 330
++ P Q +G P+P+M + + Y YP + P
Sbjct: 463 -------MVQPGQQAQRPSGRRSGAGPVQPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVP 515
Query: 331 RAGQAAAN-----NLTNGNHRAAASNENLSS-----MLVATSPDERKDILGQRLYPLVKK 380
AG ++ R A ++ + + L +P++++ +LG+ LYPLV +
Sbjct: 516 MAGLPGGMLPVPYDMGGMPFRDGAFSQPMQTGALATALANATPEQQRTLLGENLYPLVDQ 575
Query: 381 LK 382
L+
Sbjct: 576 LE 577
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L + +L+ +F++ G I S +V + S GYG+V Y+ A A+E L
Sbjct: 32 YVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVLN 91
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M Y P IR+ S N+Y+KNLD + + L + FS FG I
Sbjct: 92 FTPVNGKPIRIMYSYRDPTIRK-------SGAGNIYIKNLDKAIDNKALHDTFSAFGNIL 144
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--- 179
S ++ D+ G S G+G + K A K + F R R+ER
Sbjct: 145 SCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLR-RQERESGTD 203
Query: 180 -------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E +LK+ F + G I+S +MR G S+
Sbjct: 204 KTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSR 248
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 229/494 (46%), Gaps = 105/494 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 101 MYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY + E+A AIEKL G + ++YVGPF+R+ +R + + F N++VKNL + EE
Sbjct: 161 QYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEE 220
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS+ + KD +G S+ FG +K +V R
Sbjct: 221 ELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGR 280
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE + LY KN++D + + +LK+ FS GTI+S K+
Sbjct: 281 AQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKV 340
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR G+SKG +A+AQ K ER + L+
Sbjct: 341 MRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 400
Query: 237 ---------------MYAKQGPGLASTIF---PVHPTLYQRALQVYQ---APDFR-HGGM 274
MY GPGL IF P L +A YQ P R GG
Sbjct: 401 MRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGP 460
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYP------ 326
+PN F P P + G P+PLM + + Y YP
Sbjct: 461 MPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQ--PVPLMQQQMFPRGRGYRYPPGRGLP 518
Query: 327 -ISQPRAGQAAAN---NLTNGNHRAAASNE-----NLSSMLVATSPDERKDILGQRLYPL 377
++ P G + ++ R A + L++ L +SP E++ +LG+ LYPL
Sbjct: 519 DVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPL 578
Query: 378 VKKLKVITHIFVKG 391
V++L+ T V G
Sbjct: 579 VEQLEPETAAKVTG 592
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 52/242 (21%)
Query: 13 GIGNAFVK-----NLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYST 64
G+ N FV +L + + +L+ +F++ G + S +V + SQ +S GYG+V Y
Sbjct: 20 GVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQ--RSLGYGYVNYGN 77
Query: 65 PESALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P+ A A+E L G + M P IRR S N+++KNLD + +
Sbjct: 78 PQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRR-------SGNGNIFIKNLDKAIDHKA 130
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S ++ D++G SKG+G K +YV
Sbjct: 131 LHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPF 190
Query: 157 QKKAERK-AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+K ER A+ + +F + KN+++ E EL++ F + G I+SV +M+ + G
Sbjct: 191 VRKHERDMAVDKTRFTNV------FVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGK 244
Query: 216 SK 217
S+
Sbjct: 245 SR 246
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 152/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 110 MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY+ ESA AIEKL G + ++YVGPF+RR +R + F N+YVKNL + T++
Sbjct: 170 QYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD 229
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+GKITS V+ KD +G SKGFG K YV R
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ LR ++E+ KE A+ LY KN++ + + +LK+ FS GT++S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKV 349
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G SKG T E T + + K
Sbjct: 350 MRDPNGTSKGSGFVAFSTPEEATEAMSQLSGK 381
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 41/235 (17%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDA 71
G + +V +L + + +L FS+ G + S +V +S GYG+V ++ P+ A A
Sbjct: 34 GTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 93
Query: 72 IEKLQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
I++L G + M + P +RR S N+++KNLD+ + + L + FS
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRR-------SGAGNIFIKNLDESIDHKALHDTFSV 146
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERM 173
FG I S ++ D++G SKG+G +V A +++ +KAI + F R
Sbjct: 147 FGNIVSCKVAVDSSGQSKGYG----FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR- 201
Query: 174 RKER---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R+ER +Y KN+ + + +LK F + G I+S +M+ G SKG
Sbjct: 202 RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKG 256
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +LD ++T+ L + FS+ G + S+ + +D A S G+G YV
Sbjct: 32 GFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYG----YVNFTNP 87
Query: 159 KAERKAI------------LRAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQC 200
+ +AI +R + +R+ A KN+++ +D L FS
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVF 147
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K+ G SKG+
Sbjct: 148 GNIVSCKVAVDSSGQSKGY 166
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 203/398 (51%), Gaps = 56/398 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L FS FG+I S KVV + G SKGYGFV
Sbjct: 119 MWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG---SSFNNLYVKNLDDDMTE 117
Y T E+A AI K+ G + +++VG F+ R +R++ G + F N++VKNL +D T+
Sbjct: 178 HYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTD 237
Query: 118 EILVEKFSEFGKITSLVISKDANGT-SKGFG-----------------------SKVLYV 153
L + FS+FGKITS+VI K ++ SKGFG K L+V
Sbjct: 238 AALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKKAER+A L+ +++ +R ER Y KN++D +DE +++ F+ GTI+SV
Sbjct: 298 ARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSV 357
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA--LQVY 264
KIMR ++G S+G + E T + M + G P++ L QRA +
Sbjct: 358 KIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPK---PLYVALAQRAEDRRAQ 414
Query: 265 QAPDFRH-----GGMIPNGFSPPPPSPLFLMAPD----SVTQYRG------AMMNGHANF 309
A F GG + G P P ++ P V Q RG M G
Sbjct: 415 LAAHFAQQRGNMGGRMAGGVIAGMP-PQYMAGPQMFYAGVPQNRGMVYPQNVMRRGAWPA 473
Query: 310 PMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRA 347
+P+ ++ +P + ++ P+ A N + G +RA
Sbjct: 474 NVPVGVAAGARPGFGPFMAVPQGVPRQAGNNSRGGNRA 511
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 214/452 (47%), Gaps = 89/452 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG+GN F+KNL +IDN L+ FS FG+I S K+ + G KGYGFV
Sbjct: 87 MWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T ++AL+AI ++ G + +++VG ++ + +RI++ + F N+YVKN DDM
Sbjct: 147 HFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMD 206
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E + E +E GKI SL + D G SKGF G + L+
Sbjct: 207 DEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWA 266
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RA+K+AER A ++A+ E+ R+ER LY KN++D +D+ L++ FS GTISS
Sbjct: 267 GRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSA 326
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQR-- 259
K+M+ D+G SKG + E T + RI+ +K P++ L QR
Sbjct: 327 KVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISK----------PLYVALAQRRE 376
Query: 260 -------ALQVYQAPDFR-HGGMIPNGFSP-----------PPPSPLFLMAPDSVTQYRG 300
A +++ R H G P F+P PP M P V
Sbjct: 377 ERKAQLAAQHMHRISGLRMHQGQRPF-FTPQMPQVRPRWGMPPQQQQQQMRPTGVQN--- 432
Query: 301 AMMNGHANFP------MPLM------LSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAA 348
M G A P MP M + + Y SQ A + G
Sbjct: 433 --MGGQAGMPQGGPAGMPRMPVQQARMGGVPPQRQPYKFSQTVRNPPPAGQMPEGGQGIP 490
Query: 349 ASNENLS-SMLVATSPDERKDILGQRLYPLVK 379
E L+ S+L A +P E+K +LG+RL+PL++
Sbjct: 491 GGQEPLNPSVLAAATPQEQKQMLGERLFPLIQ 522
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q KA
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLV-TRRSLG--YAYVNFQQPGHAEKA 70
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 71 LDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSC 130
Query: 207 KIMRTDRGISKGH 219
KI + + G KG+
Sbjct: 131 KIAQDELGNPKGY 143
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 219/479 (45%), Gaps = 105/479 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +IDN LH FS FG+I S KV G+S+GYGFV
Sbjct: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +++VGPF+R+ +R + + FNN+YVKNL + TE+
Sbjct: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS + +DA+G SK FG K YV +
Sbjct: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE A+ + KN++D + + +LK+ FS+ GTI+S K+
Sbjct: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K ER + L+
Sbjct: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
Query: 237 ----------MYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSP 286
MY PGL +F + GM PN F P
Sbjct: 414 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVP----- 468
Query: 287 LFLMAPDSVTQYRGAMMNG-----HANFPMPLMLSNL--------QKPSYNYPISQPRAG 333
++ P Q G +G A P+PLM + P N P P AG
Sbjct: 469 --MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIP-DVPVAG 525
Query: 334 QAAAN-----NLTNGNHRAAASNENLSS-----MLVATSPDERKDILGQRLYPLVKKLK 382
++ R AA ++ + + L SP++++ +LG+ LYPLV +L+
Sbjct: 526 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 584
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 51/250 (20%)
Query: 6 NSEARLSGIGNA--------FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKG 56
N A G+G+A +V +L ++++ +L+ +F++ G + S +V +S G
Sbjct: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
Query: 57 YGFVQYSTPESALDAIEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
YG+V Y+ A A+++ L G + M Y P IR+ S N+++KNL
Sbjct: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK-------SGAGNIFIKNL 135
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
D + + L + FS FG I S ++ D+ G S+G+G
Sbjct: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
Query: 149 KVLYVARAQKKAERKAIL-RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVK 207
K ++V +K ER++ + +F + KN+++ E +LK+ F + G I+S
Sbjct: 196 KQVFVGPFLRKQERESTADKTRFNNV------YVKNLSETTTEDDLKKIFGEFGIITSTA 249
Query: 208 IMRTDRGISK 217
+MR G SK
Sbjct: 250 VMRDADGKSK 259
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 169/312 (54%), Gaps = 59/312 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
++S + R SG+GN F+KNL ID + L F++FG+I S+KV +G SKGYGF+
Sbjct: 117 LYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQGNSKGYGFI 176
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ T +A +AIEK+ G + +YVGPF RRA+R + FNN++VKNL D++T+E L
Sbjct: 177 QFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEEL 236
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
+ F FG +TS++ISKD +G SKGFG K V RA
Sbjct: 237 RKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRA 296
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A L+A+FE R+ER E LY KN+ D D+ L++ F + GTI+S ++M
Sbjct: 297 QKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVM 356
Query: 210 RTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAKQ 241
R G+S+G +A+AQ K +R L+ +A++
Sbjct: 357 RDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRKEDRRMRLQAQFAQR 416
Query: 242 GPGLASTIFPVH 253
G + P++
Sbjct: 417 SMGPGGVMAPMY 428
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 151/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 110 MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY+ ESA AIEKL G + ++YVGPF+RR +R + F N+YVKNL + T++
Sbjct: 170 QYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD 229
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+GKITS V+ KD G SKGFG K YV R
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ LR ++E+ KE A+ LY KN++ + + +LK+ FS GT++S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G SKG T E T + + K
Sbjct: 350 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 381
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 106/206 (51%), Gaps = 37/206 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
+S A + N +VKNLA + + L F ++G I S+ V+ EGKSKG+GFV +
Sbjct: 206 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSF--NNLYVKNL 111
+ A A+E L G + E YVG ++++R E F +NLYVKNL
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 325
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
D +++E L E FS FG +TS + +D NGTSKG G S
Sbjct: 326 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 385
Query: 149 KVLYVARAQKKAERKAILRAQFERMR 174
K LYVA AQ+K +R+ L+AQF ++R
Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVR 411
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 45/232 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + + +L F + G + + +V +V++ +S GYG+V ++ P+ A AI++
Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTR--RSLGYGYVNFTNPQDAARAIQE 96
Query: 75 LQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M + P +RR S N+++KNLD+ + + L + FS FG
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR-------SGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKE 176
I S ++ D++G SKG+G +V A +++ +KAI + F R R+E
Sbjct: 150 IVSCKVAVDSSGQSKGYG----FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-RQE 204
Query: 177 R---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R +Y KN+ + + +LK F + G I+S +M+ G SKG
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 223/478 (46%), Gaps = 103/478 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG GN F+KNL +IDN L+ F FG+I S K+ G+S+GYGFV
Sbjct: 109 MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +++VGPF+R+ DR + F+N+YVKNL D +T++
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F ++G ITS V+ +D++G S+ FG K LYV R
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGR 288
Query: 156 AQKKAERKAILRAQFERMRKERAELYKNIN-------DEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E AE ++N N + +D+ +L++ F++ G I+S K+
Sbjct: 289 AQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKV 348
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+S+G +A+AQ K +R + L+ +++
Sbjct: 349 MRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ 408
Query: 241 QGP-GLASTIFPVHPTLYQRALQVYQA------------------PDFRHGGMIPNGFSP 281
P +A ++ P P V Q P R GG +PN P
Sbjct: 409 MRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQQPLMPGMRPGGPMPNFMMP 468
Query: 282 PPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKP----SYNYPISQ--PRAGQA 335
++ Q G PMP+ P Y YP + P G
Sbjct: 469 -------MVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFPRGGRGYRYPTGRGMPDPGMH 521
Query: 336 AANNLTNGNH-------RAAASNE----NLSSMLVATSPDERKDILGQRLYPLVKKLK 382
+ + ++ R AA L++ L PD+++ +LG+ LYPLV++L+
Sbjct: 522 SVGAVMPPSYEMGGMPMREAAPQPVPIGALATALANAPPDQQRLMLGENLYPLVEQLE 579
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V KS GY +V Y+ A A+E L
Sbjct: 38 YVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLN 97
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + D S N+++KNLD + + L + F FG I S I+
Sbjct: 98 FTPINGKPIRI--MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIA 155
Query: 137 KDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL------- 180
D +G S+G+G + + A K + F R +++R +
Sbjct: 156 TDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR-KQDRENVSSNIKFS 214
Query: 181 ---YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN++D V + ELK+ F + GTI+S +MR G S+
Sbjct: 215 NVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSR 254
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 226/475 (47%), Gaps = 105/475 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL IDN L+++FS FG I SSKV GKSKGYGF+
Sbjct: 136 MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFI 195
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + SA DAI L G +++VG FIRR +R G ++F N+YVKNL ++
Sbjct: 196 QFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDN 255
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L+ +FS FG ITS ++ +DANG S+ FG VLYVAR
Sbjct: 256 DLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVAR 315
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A L+A+FE + ++ E LY KN++D++++ L++ F G ++S K+
Sbjct: 316 AQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKV 375
Query: 209 MRTDRGISKGHC-----------------------------MAIAQTKRERTSYLRIMYA 239
M G SKG C +A+AQ K ER ++L +A
Sbjct: 376 MLDSHGRSKG-CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFA 434
Query: 240 K------QGPGLASTIFPVHPTLYQRALQVYQA----------PDFRHGGMIPNGF---- 279
+ P L I P H + + P+F M+P
Sbjct: 435 RVRALATMAPTLGPNIAP-HQFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQP 493
Query: 280 ---SPPP----------PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP 326
S PP P +F + ++ NG AN P ML Q ++ P
Sbjct: 494 GQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVAN---PAMLH--QHHRFSSP 548
Query: 327 ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
+ QP Q A ++ A SN NL + L + +P+++++ILG L+PLV++L
Sbjct: 549 M-QPM--QQAVKHVVPVGELQAPSN-NLQTSLASANPEQQREILGDMLFPLVEQL 599
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK--GYGFVQYSTPESALDAIEKL 75
+V +L +++ +L +FS+ + S+ V G SK GYG+V + + E A A+E L
Sbjct: 64 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMENL 123
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
V + V D S N+++KNL+ ++ + L E FS FG I S +
Sbjct: 124 NFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 136 SKDANGTSKGFGSKVLYVARAQKK----------AERKAILRAQFERMRKERAEL----- 180
+ D NG SKG+G + + + + K A + I F R R+ER
Sbjct: 182 ATDFNGKSKGYGF-IQFESESSAKDAINGLNGMLANGQKIFVGLFIR-RQEREHTGDANN 239
Query: 181 -----YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + +L FS G I+S +MR G+S+
Sbjct: 240 FTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSR 281
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L+ + E+ LV FS+ + S + +D G SK G YV ++ +A+
Sbjct: 63 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYG--YVNFMSREDATRAM 120
Query: 166 ------------LRAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+R F +RK A ++ KN+ +D L + FS GTI S K
Sbjct: 121 ENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSK 180
Query: 208 IMRTDRGISKGH 219
+ G SKG+
Sbjct: 181 VATDFNGKSKGY 192
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 226/475 (47%), Gaps = 105/475 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL IDN L+++FS FG I SSKV GKSKGYGF+
Sbjct: 135 MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFI 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + SA DAI L G +++VG FIRR +R G ++F N+YVKNL ++
Sbjct: 195 QFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDN 254
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L+ +FS FG ITS ++ +DANG S+ FG VLYVAR
Sbjct: 255 DLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVAR 314
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A L+A+FE + ++ E LY KN++D++++ L++ F G ++S K+
Sbjct: 315 AQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKV 374
Query: 209 MRTDRGISKGHC-----------------------------MAIAQTKRERTSYLRIMYA 239
M G SKG C +A+AQ K ER ++L +A
Sbjct: 375 MLDSHGRSKG-CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFA 433
Query: 240 K------QGPGLASTIFPVHPTLYQRALQVYQA----------PDFRHGGMIPNGF---- 279
+ P L I P H + + P+F M+P
Sbjct: 434 RVRALATMAPTLGPNIAP-HQFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQP 492
Query: 280 ---SPPP----------PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP 326
S PP P +F + ++ NG AN P ML Q ++ P
Sbjct: 493 GQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVAN---PAMLH--QHHRFSSP 547
Query: 327 ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
+ QP Q A ++ A SN NL + L + +P+++++ILG L+PLV++L
Sbjct: 548 M-QPM--QQAVKHVVPVGELQAPSN-NLQTSLASANPEQQREILGDMLFPLVEQL 598
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTPESALDAIEKL 75
+V +L +++ +L +FS+ + S+ V G KS GYG+V + + E A A+E L
Sbjct: 63 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMENL 122
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
V + V D S N+++KNL+ ++ + L E FS FG I S +
Sbjct: 123 NFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 136 SKDANGTSKGFGSKVLYVARAQKK----------AERKAILRAQFERMRKERAEL----- 180
+ D NG SKG+G + + + + K A + I F R R+ER
Sbjct: 181 ATDFNGKSKGYGF-IQFESESSAKDAINGLNGMLANGQKIFVGLFIR-RQEREHTGDANN 238
Query: 181 -----YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + +L FS G I+S +MR G+S+
Sbjct: 239 FTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSR 280
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L+ + E+ LV FS+ + S + +D G K G YV ++ +A+
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYG--YVNFMSREDATRAM 119
Query: 166 ------------LRAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+R F +RK A ++ KN+ +D L + FS GTI S K
Sbjct: 120 ENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSK 179
Query: 208 IMRTDRGISKGH 219
+ G SKG+
Sbjct: 180 VATDFNGKSKGY 191
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 224/488 (45%), Gaps = 99/488 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 101 MYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY + E+A AIEKL G + ++YVGPF+R+ +R + + F N++VKNL + EE
Sbjct: 161 QYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEE 220
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS+ + KD +G S+ FG +K +V R
Sbjct: 221 ELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGR 280
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E + LY KN++D + + +LK+ FS GTI+S K+
Sbjct: 281 AQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKV 340
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR G+SKG +A+AQ K ER + L+
Sbjct: 341 MRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 400
Query: 237 ---------------MYAKQGPGLASTIF---PVHPTLYQRALQVYQ---APDFR-HGGM 274
MY GPGL IF P L +A YQ P R GG
Sbjct: 401 MRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPPPAMLPPQAGFGYQQQLVPGMRPGGGP 460
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYPISQ--- 329
+PN F P P + G P+PLM + + Y YP +
Sbjct: 461 MPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQ--PVPLMQQQMFPRGRGYRYPPGRGLP 518
Query: 330 ----PRAGQAAANNLTNGNHRAAASNE--NLSSMLVATSPDERKDILGQRLYPLVKKLKV 383
P G + + R L++ L SP E++ +LG+ LYPLV++L+
Sbjct: 519 DGAFPGVGGGMFSIPYDIGGRIVQPIPVGALATALANASPTEQRTMLGENLYPLVEQLEP 578
Query: 384 ITHIFVKG 391
T V G
Sbjct: 579 ETAAKVTG 586
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 52/242 (21%)
Query: 13 GIGNAFVK-----NLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYST 64
G+ N FV +L + + +L+ +F++ G + S +V + SQ +S GYG+V Y
Sbjct: 20 GVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQ--RSLGYGYVNYGN 77
Query: 65 PESALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P+ A A+E L G + M P IRR S N+++KNLD + +
Sbjct: 78 PQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRR-------SGNGNIFIKNLDKAIDHKA 130
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S ++ D++G SKG+G K +YV
Sbjct: 131 LHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPF 190
Query: 157 QKKAERK-AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+K ER A+ + +F + KN+++ E EL++ F + GTI+SV +M+ + G
Sbjct: 191 VRKQERDMAVDKTRFTNV------FVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGK 244
Query: 216 SK 217
S+
Sbjct: 245 SR 246
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 226/475 (47%), Gaps = 105/475 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL IDN L+++FS FG I SSKV GKSKGYGF+
Sbjct: 159 MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFI 218
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ + SA DAI L G +++VG FIRR +R G ++F N+YVKNL ++
Sbjct: 219 QFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDN 278
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L+ +FS FG ITS ++ +DANG S+ FG VLYVAR
Sbjct: 279 DLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVAR 338
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A L+A+FE + ++ E LY KN++D++++ L++ F G ++S K+
Sbjct: 339 AQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKV 398
Query: 209 MRTDRGISKGHC-----------------------------MAIAQTKRERTSYLRIMYA 239
M G SKG C +A+AQ K ER ++L +A
Sbjct: 399 MLDSHGRSKG-CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFA 457
Query: 240 K------QGPGLASTIFPVHPTLYQRALQVYQA----------PDFRHGGMIPNGF---- 279
+ P L I P H + + P+F M+P
Sbjct: 458 RVRALATMAPTLGPNIAP-HQFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQP 516
Query: 280 ---SPPP----------PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP 326
S PP P +F + ++ NG AN P ML Q ++ P
Sbjct: 517 GQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVAN---PAMLH--QHHRFSSP 571
Query: 327 ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
+ QP Q A ++ A SN NL + L + +P+++++ILG L+PLV++L
Sbjct: 572 M-QPM--QQAVKHVVPVGELQAPSN-NLQTSLASANPEQQREILGDMLFPLVEQL 622
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTPESALDAIEKL 75
+V +L +++ +L +FS+ + S+ V G KS GYG+V + + E A A+E L
Sbjct: 87 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMENL 146
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
V + V D S N+++KNL+ ++ + L E FS FG I S +
Sbjct: 147 NFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 136 SKDANGTSKGFGSKVLYVARAQKK----------AERKAILRAQFERMRKERAE------ 179
+ D NG SKG+G + + + + K A + I F R R+ER
Sbjct: 205 ATDFNGKSKGYGF-IQFESESSAKDAINGLNGMLANGQKIFVGLFIR-RQEREHTGDANN 262
Query: 180 ----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + +L FS G I+S +MR G+S+
Sbjct: 263 FTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSR 304
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L+ + E+ LV FS+ + S + +D G K G YV ++ +A+
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYG--YVNFMSREDATRAM 143
Query: 166 ------------LRAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+R F +RK A ++ KN+ +D L + FS GTI S K
Sbjct: 144 ENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSK 203
Query: 208 IMRTDRGISKGH 219
+ G SKG+
Sbjct: 204 VATDFNGKSKGY 215
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 151/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 94 MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFV 153
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY+ ESA AIEKL G + ++YVGPF+RR +R + F N+YVKNL + T++
Sbjct: 154 QYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD 213
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+GKITS V+ KD G SKGFG K YV R
Sbjct: 214 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 273
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ LR ++E+ KE A+ LY KN++ + + +LK+ FS GT++S K+
Sbjct: 274 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 333
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G SKG T E T + + K
Sbjct: 334 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 365
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 106/206 (51%), Gaps = 37/206 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
+S A + N +VKNLA + + L F ++G I S+ V+ EGKSKG+GFV +
Sbjct: 190 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 249
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSF--NNLYVKNL 111
+ A A+E L G + E YVG ++++R E F +NLYVKNL
Sbjct: 250 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 309
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
D +++E L E FS FG +TS + +D NGTSKG G S
Sbjct: 310 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 369
Query: 149 KVLYVARAQKKAERKAILRAQFERMR 174
K LYVA AQ+K +R+ L+AQF ++R
Sbjct: 370 KPLYVAIAQRKEDRRVRLQAQFSQVR 395
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 45/232 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + + +L F + G + + +V +V++ +S GYG+V ++ P+ A AI++
Sbjct: 23 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTR--RSLGYGYVNFTNPQDAARAIQE 80
Query: 75 LQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M + P +RR S N+++KNLD+ + + L + FS FG
Sbjct: 81 LNYIPLYGKPIRVMYSHRDPSVRR-------SGAGNIFIKNLDESIDHKALHDTFSSFGN 133
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKE 176
I S ++ D++G SKG+G +V A +++ +KAI + F R R+E
Sbjct: 134 IVSCKVAVDSSGQSKGYG----FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-RQE 188
Query: 177 R---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R +Y KN+ + + +LK F + G I+S +M+ G SKG
Sbjct: 189 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 240
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 187/375 (49%), Gaps = 75/375 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL IDN LH FS FG I S KV G+SKGYGFV
Sbjct: 98 MFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSGQSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ESA AIEK+ G + +++VGPF+RR +R G S FNN+YVKNL ++ T++
Sbjct: 158 QFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENTTDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F +G I+S V+ +D G SK FG K YV R
Sbjct: 218 ELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGR 277
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA+FE+ RK R E Y KN++D VD+ +L++ F++ GTI+S K+
Sbjct: 278 AQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
M+ +G S+G +A+AQ K ER L+ +A+
Sbjct: 338 MKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVALAQRKEERRVRLQAAFAQ 397
Query: 241 QGPGLASTIFPVHPTLYQRALQVYQ-----APDFRHGGMIPNGFSPPPPSPLFLMAPDSV 295
+ + + P PT +L +Y P + G P+G P P P P +
Sbjct: 398 ----MRTPVGPTVPT----SLPMYHPGPGLGPQMPYYGQHPSG--PIPLQPAAFGYPPQI 447
Query: 296 TQYRGAMMNGHANFP 310
+ GA + + +P
Sbjct: 448 MRPGGAQIPNYIGYP 462
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 37/229 (16%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAI 72
+ +V +L + +L++IFS+ G + S +V ++++ +S GY +V Y + + A A+
Sbjct: 25 SVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITR--RSLGYAYVNYHSAQDATRAL 82
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L G + M + P +R+ S N+++KNLD + + L + FS F
Sbjct: 83 ELLNFTPVNGKPIRIMFSHRDPSLRK-------SGAANIFIKNLDKAIDNKALHDTFSAF 135
Query: 128 GKITSLVISKDANGTSKGFG-SKVLYVARAQKKAER--------KAILRAQFERMRKERA 178
G I S ++ D++G SKG+G + AQ E+ K + F R R+ER
Sbjct: 136 GGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVR-RQERD 194
Query: 179 ---------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+Y KN+ + + ELK+ F G ISS +MR + G SK
Sbjct: 195 LSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSK 243
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 196/394 (49%), Gaps = 74/394 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + R SG N F+KNL +IDN L F+ FG + S KV V G+SKGYGFV
Sbjct: 109 MISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ-EGSSFNNLYVKNLDDDMTEEI 119
Q+ + ESA +IEKL G + ++YVG FIR +RI+ GS F N+YVKNL + T++
Sbjct: 169 QFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDD 228
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVAR 155
L F+ G ITS ++ D+NG SK FG K LYV R
Sbjct: 229 LKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGR 288
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+KAER+A LRA+FE+ RK R A LY KN++D +D+ +LK+ FS+ GTI+S K+
Sbjct: 289 AQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKV 348
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
M G+SKG +A+AQ K ER + L+ +A+
Sbjct: 349 MLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQ 408
Query: 241 -QGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYR 299
+ G S++ P + A +V +P + G G +PP P+ + P ++ R
Sbjct: 409 IRAAGGISSLPSGIPGFHPGAARV--SPQQMYYGQGNPGLAPPQPAG-YGFQPQLMSGMR 465
Query: 300 GAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAG 333
M NF MP +P PR+G
Sbjct: 466 PGM---GPNFLMPYQFQRQGQPG-------PRSG 489
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 225/484 (46%), Gaps = 109/484 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG GN F+KNL +IDN L+ F FG+I S K+ G+S+GYGFV
Sbjct: 109 MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +++VGPF+R+ DR + F+N+YVKNL D +T++
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F ++G ITS V+ +D++G S+ FG K LYV R
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGR 288
Query: 156 AQKKAERKAILRAQFERMRKERAELYKNIN-------DEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E AE ++N N + +D+ +L++ F++ G I+S K+
Sbjct: 289 AQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKV 348
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+S+G +A+AQ K +R + L+ +++
Sbjct: 349 MRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ 408
Query: 241 QGP-GLASTIFPVHPT------------LYQR------------ALQVYQAPDFRHGGMI 275
P +A ++ P P Y + A Q P R GG +
Sbjct: 409 MRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGGPM 468
Query: 276 PNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKP----SYNYPISQ-- 329
PN P ++ Q G PMP+ P Y YP +
Sbjct: 469 PNFMMP-------MVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFPRGGRGYRYPTGRGM 521
Query: 330 PRAGQAAANNLTNGNH-------RAAASNE----NLSSMLVATSPDERKDILGQRLYPLV 378
P G + + ++ R AA L++ L PD+++ +LG+ LYPLV
Sbjct: 522 PDPGMHSVGAVMPPSYEMGGMPMREAAPQPVPIGALATALANAPPDQQRLMLGENLYPLV 581
Query: 379 KKLK 382
++L+
Sbjct: 582 EQLE 585
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V KS GY +V Y+ A A+E L
Sbjct: 38 YVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLN 97
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + D S N+++KNLD + + L + F FG I S I+
Sbjct: 98 FTPINGKPIRI--MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIA 155
Query: 137 KDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL------- 180
D +G S+G+G + + A K + F R +++R +
Sbjct: 156 TDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR-KQDRENVSSNIKFS 214
Query: 181 ---YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN++D V + ELK+ F + GTI+S +MR G S+
Sbjct: 215 NVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSR 254
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 152/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 114 MYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY T ESA A+ +L G + ++YVGPF+RR +R G+ F N+YVKNL + T++
Sbjct: 174 QYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDD 233
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFGKITS V+ KD G KGFG K +V R
Sbjct: 234 DLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGR 293
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ Q+E+ KE A+ LY KN++D V + +LK+ F+ GT++S K+
Sbjct: 294 AQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKV 353
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G T E T + M K
Sbjct: 354 MRDPNGMSRGSGFVAFSTPEEATKAMSEMSGK 385
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDA 71
G + +V +L + + +L FS+ G + S +V +S GYG+V +++P+ A A
Sbjct: 38 GTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARA 97
Query: 72 IEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
I++ L G V M + P +RR S N+++KNLD + + L + FS
Sbjct: 98 IQELNYIPLNGKPVRVMYSHRDPSVRR-------SGAGNIFIKNLDKSIDHKALHDTFSV 150
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKER 177
FG I S ++ D++G SKG+G + +KA K + F R R+ER
Sbjct: 151 FGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLR-RQER 209
Query: 178 ---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+Y KN+ + + +LK F + G I+S +M+ G KG
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKG 260
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD ++T+ L + FS+ G++ S+ + +D A S G+G YV + +
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYG----YVNFTSPQDAAR 96
Query: 164 AI------------LRAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
AI +R + +R+ A KN++ +D L FS G I S
Sbjct: 97 AIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIIS 156
Query: 206 VKIMRTDRGISKGHCMAIAQTK 227
K+ G SKG+ +T+
Sbjct: 157 CKVAVDSSGQSKGYGFVQYETE 178
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 230/491 (46%), Gaps = 116/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D++G SKGFG K+++V
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+TI P P R Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGR 442
Query: 275 ------IPNGFSPPPPSP-LFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ-KPSYNYP 326
+PN P P L + P S TQ + +P + NL +PS P
Sbjct: 443 PQGFQGVPNAIRQSGPRPTLRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATP 502
Query: 327 ISQPRAG---QAAANNLTNGNHRA------------AASNENLS-SMLVATSPDERKDIL 370
PRA + AAN H A E L+ SML A P E+K +L
Sbjct: 503 A--PRAVPPYKYAAN--VRSPHPAIQPLQTPQPAVHVQGQEPLTASMLAAAPPQEQKQML 558
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 559 GERLFPLIQTM 569
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 227/489 (46%), Gaps = 115/489 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 99 MYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFV 158
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + E+A AIEKL G + ++YVGPF+R+ +R + FNN++VKNL + TEE
Sbjct: 159 QFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEE 218
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS+V+ +D +G SK FG K +V +
Sbjct: 219 DLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGK 278
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE A+ LY KN++D + + +LK+ FS GTI+S K+
Sbjct: 279 AQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKV 338
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 339 MRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQ 398
Query: 237 ---------------MYAKQGPGLASTIFPVHPTL----------YQRALQVYQAPDFRH 271
MY GPGL IF YQ+ L P R
Sbjct: 399 MRPVAMAPSVGPRMPMYPPAGPGLGQQIFYGQAPPAIIPPQPGFGYQQQL----VPGMRP 454
Query: 272 GGM-IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYPIS 328
GG +PN F P + R A + P+PLM + + Y YP
Sbjct: 455 GGAPMPNFFVP----MVQQGQQGQRPGGRRAGAGQQSQQPVPLMQQQMLPRGRVYRYPPG 510
Query: 329 Q-----PRAGQAAAN-----NLTNGNHRAAASNENL-----SSMLVATSPDERKDILGQR 373
+ P G A ++ R AA ++++ ++ L +PD+++ +LG+
Sbjct: 511 RGLPDVPMTGVAGGMLPVPYDMGGMPMRDAALSQSIPVGALATALANATPDQQRTMLGEN 570
Query: 374 LYPLVKKLK 382
LYPLV++L+
Sbjct: 571 LYPLVEQLE 579
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 41/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE--- 73
+V +L +++ + +L+ +F++ G + S +V + S GYG+V YS P+ A A+E
Sbjct: 28 YVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEMLN 87
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G+ + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 88 FTPLNGSPIRVMYSHRDPTIRK-------SGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 140
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D +G SKG+G K +YV +K ER
Sbjct: 141 SCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTAT-- 198
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
++MR KN+++ E +L + F + GTI+S+ +MR G SK
Sbjct: 199 --DKMRFNNV-FVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSK 244
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 165/329 (50%), Gaps = 49/329 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG+GN F+KNL +ID LH FS FG I S KV G SKGYGFV
Sbjct: 98 MWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ +A AI+ + +E +YVGPF +RADR Q + N++VKNL ++ ++ L
Sbjct: 158 HFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDEL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+ +EFG++TS V+ KD G+SKGF G KVLY RAQ
Sbjct: 218 SKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQ 277
Query: 158 KKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK ER+A+LR + E ++ER Y KN+ DEVD+ L+ F+ CGTI+S K+M+
Sbjct: 278 KKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMK 337
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFR 270
G SKG + E T + M K G P++ L QR D R
Sbjct: 338 DTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGK-----PLYVALAQRK-------DVR 385
Query: 271 HGGMIPN-------GFSPPPPSPLFLMAP 292
+ N G PP+P+ M P
Sbjct: 386 RAQLEANVQNRLGMGAMTRPPNPMTGMGP 414
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQKKAER 162
++LYV +L+ D+TE L E FS G + S+ + +DA T + G + V Y + +A
Sbjct: 21 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAV-TRRSLGYAYVNYNSALDPQAAE 79
Query: 163 KAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTIS 204
+A+ + + + + KN++ +D L FS G I
Sbjct: 80 RAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKIL 139
Query: 205 SVKIMRTDRGISKGH 219
S K+ G+SKG+
Sbjct: 140 SCKVATDANGVSKGY 154
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 154/492 (31%), Positives = 226/492 (45%), Gaps = 121/492 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 102 MYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AIEKL G + ++YVGPF+R+ +R + + FNN++VKNL + T++
Sbjct: 162 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDD 221
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS V+ +D +G SK FG K YV +
Sbjct: 222 ELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGK 281
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ FS GTI+S K+
Sbjct: 282 AQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKV 341
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G + +AQ K +R + L+
Sbjct: 342 MRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 401
Query: 237 ---------------MYAKQGPGLASTIF---------PVHPTL-YQRALQVYQAPDFRH 271
MY GPG+ IF P P YQ+ L P R
Sbjct: 402 MRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQPGFGYQQQL----VPGMRP 457
Query: 272 GGM-IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNG---HANFPMPLMLSNL--QKPSYNY 325
G +PN F P ++ Q G G + P+P+M + + Y Y
Sbjct: 458 GAAPVPNFFVP-------MVQQGQQGQRPGGRRTGAVQQSQQPVPMMPQQMLPRGRVYRY 510
Query: 326 P-------ISQPRAGQ---AAANNLTNGNHRAAASNEN-----LSSMLVATSPDERKDIL 370
P +S P + ++ R A+ ++ L++ L SP++++ +L
Sbjct: 511 PPGRGMPDVSMPGVAGGMFSVPYDVGGMPLRDASISQQIPVGALATALANASPEQQRTML 570
Query: 371 GQRLYPLVKKLK 382
G+ LYPLV++L+
Sbjct: 571 GENLYPLVEQLE 582
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE--- 73
+V +L + + +L+ +F++ G + S +V + S GYG+V +S P+ A A++
Sbjct: 31 YVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLN 90
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 91 FTPLNNRPIRIMYSHRDPSIRK-------SGQGNIFIKNLDRAIDHKALHDTFSTFGNIL 143
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-R 167
S ++ D++G SKG+G K +YV +K ER++ +
Sbjct: 144 SCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADK 203
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A+F + KN+++ + ELK F + GTI+S +MR G SK
Sbjct: 204 AKFNNV------FVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSK 247
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD ++T+ L + F++ G++ S+ + +D + + G + + Q A
Sbjct: 29 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLT-SRRSLGYGYVNFSNPQDAARALD 87
Query: 165 IL----------------RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKI 208
+L R R + KN++ +D L FS G I S K+
Sbjct: 88 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKV 147
Query: 209 MRTDRGISKGH 219
G SKG+
Sbjct: 148 ATDSSGQSKGY 158
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 192/382 (50%), Gaps = 67/382 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + R SG N F+KNL +IDN L F+ FG + S KV V G+SKGYGFV
Sbjct: 109 MISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ-EGSSFNNLYVKNLDDDMTEEI 119
Q+ + ESA +IEKL G + ++YVG FIR +RI+ GS F N+YVKNL + T++
Sbjct: 169 QFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDD 228
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVAR 155
L F+ G ITS ++ D+NG SK FG K LYV R
Sbjct: 229 LKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGR 288
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+KAER+A L+A+FE+ RK R A LY KN++D +D+ +LK+ FS+ GTI+S K+
Sbjct: 289 AQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKV 348
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
M G+SKG +A+AQ K ER + L+ +A+
Sbjct: 349 MLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQ 408
Query: 241 -QGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYR 299
+ G S++ P + A +V +P + G G +PP P+ + P ++ R
Sbjct: 409 IRAAGGISSLPSGIPGFHPGAARV--SPQQMYYGQGNPGLAPPQPAG-YGFQPQLMSGMR 465
Query: 300 GAMMNGHANFPMPLMLSNLQKP 321
M NF MP +P
Sbjct: 466 PGM---GPNFLMPYQFQRQGQP 484
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 227/483 (46%), Gaps = 103/483 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL +IDN L+ FS FG+I S KV G+SKGYGFV
Sbjct: 116 MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY ESA +AI +L G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 176 QYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED 235
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F FG ITS+++ + +G S+ FG K LYV R
Sbjct: 236 NLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGR 295
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIE-LKQYFSQCGTISSVK 207
AQKK+ER+ L+ FE+ KE A+ LY KN++ VD+ E LK+ F++ GTI+S K
Sbjct: 296 AQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCK 355
Query: 208 IMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYA 239
+MR G++KG +A+AQ K ER + L+ ++
Sbjct: 356 VMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
Query: 240 KQGPGLASTIFPVHPT------------LYQRALQVYQAPDFRHG---GMIPNGFSPPPP 284
+ P + + P P Y + + P +G MIP P
Sbjct: 416 QMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQQHMIPGMRPGVAP 475
Query: 285 SPLFLMA-------PDSVTQYRGAMMNGHANFPMPL----MLSNLQKPSYNYPISQ--PR 331
P F+M P + R G PMP+ M+ + Y Y + P
Sbjct: 476 MPNFVMPMVQQGQQPQRPSGRRAGA--GGMQQPMPMGHQQMVPRGGRGGYRYASGRGMPE 533
Query: 332 A------GQAAA----NNLTNGNHRAA--ASNENLSSMLVATSPDERKDILGQRLYPLVK 379
A G A + +T G+ A S+ L+S L + P++++ +LG+ LYPLV
Sbjct: 534 AAFRGVGGMAPSLYEMGRMTPGDTGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVD 593
Query: 380 KLK 382
+L+
Sbjct: 594 QLE 596
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V + S GY +V +S+P A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEMLN 104
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + + D S N+++KNLD + + L + FS FG I S ++
Sbjct: 105 FTPVNGKPIRI--MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERAELY-- 181
+ +G SKG+G +V Q ++ + AI F R ++ER ++
Sbjct: 163 TEMSGESKGYG----FVQYEQDESAQNAINELNGMLLNDKKVYVGPFVR-KQERENVFGS 217
Query: 182 --------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E LK+ F G I+SV ++R D G S+
Sbjct: 218 PKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSR 261
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 227/483 (46%), Gaps = 103/483 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL +IDN L+ FS FG+I S KV G+SKGYGFV
Sbjct: 116 MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY ESA +AI +L G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 176 QYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED 235
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F FG ITS+++ + +G S+ FG K LYV R
Sbjct: 236 NLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGR 295
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIE-LKQYFSQCGTISSVK 207
AQKK+ER+ L+ FE+ KE A+ LY KN++ VD+ E LK+ F++ GTI+S K
Sbjct: 296 AQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCK 355
Query: 208 IMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYA 239
+MR G++KG +A+AQ K ER + L+ ++
Sbjct: 356 VMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
Query: 240 KQGPGLASTIFPVHPT------------LYQRALQVYQAPDFRHG---GMIPNGFSPPPP 284
+ P + + P P Y + + P +G MIP P
Sbjct: 416 QMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQQHMIPGMRPGVAP 475
Query: 285 SPLFLMA-------PDSVTQYRGAMMNGHANFPMPL----MLSNLQKPSYNYPISQ--PR 331
P F+M P + R G PMP+ M+ + Y Y + P
Sbjct: 476 MPNFVMPMVQQGQQPQRPSGRRAGA--GGMQQPMPMGHQQMVPRGGRGGYRYASGRGMPE 533
Query: 332 A------GQAAA----NNLTNGNHRAA--ASNENLSSMLVATSPDERKDILGQRLYPLVK 379
A G A + +T G+ A S+ L+S L + P++++ +LG+ LYPLV
Sbjct: 534 AAFRGVGGMAPSLYEMGRMTPGDTGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVD 593
Query: 380 KLK 382
+L+
Sbjct: 594 QLE 596
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V + S GY +V +S+P A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEMLN 104
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + + D S N+++KNLD + + L + FS FG I S ++
Sbjct: 105 FTPVNGKPIRI--MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERAELY-- 181
+ +G SKG+G +V Q ++ + AI F R ++ER ++
Sbjct: 163 TEMSGESKGYG----FVQYEQDESAQNAINELNGMLLNDKKVYVGPFVR-KQERENVFGS 217
Query: 182 --------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E LK+ F G I+SV ++R D G S+
Sbjct: 218 PKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSR 261
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 223/487 (45%), Gaps = 124/487 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +D+T
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
EE L F ++GKITS I +G SKGFG K LY
Sbjct: 205 EEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE ++ ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 265 VGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITS 324
Query: 206 VKIMRTD---RGI------------------------SKGHCMAIAQTKRERTSYLRIMY 238
K+M D +G SK +A+AQ K +R ++L Y
Sbjct: 325 AKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQY 384
Query: 239 AKQ-------------GPGLASTIF----PVHPTLYQRA--LQVYQAPDF------RHG- 272
++ PG +S F P Y A Q+ P + R G
Sbjct: 385 MQRMANIRMHQMGQFIQPGTSSGYFVPTIPAPQRFYGAAQMAQIRTNPRWPAQTPVRPGA 444
Query: 273 -------GMIPNGF--SPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSY 323
G IP + +P PP+ + A + + N P P ++ Q P+
Sbjct: 445 QGSANPYGTIPTTYRAAPRPPN-------------QSAALRSNINVPRP--ITGQQPPNI 489
Query: 324 NYPISQPRAGQAAANNLTNGNHRAAASNENL---------SSMLVATSPDERKDILGQRL 374
+P A QA G AA + + ++ML A P E+K +LG+RL
Sbjct: 490 Q---GRPLASQAVVAPAGLGISNAAPVQQAVHIQGQEPLTATMLAAAPPQEQKQMLGERL 546
Query: 375 YPLVKKL 381
+PL++++
Sbjct: 547 FPLIQRM 553
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDENGTSKGY 141
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 225/489 (46%), Gaps = 115/489 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 98 MYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AIEKL G + ++YVGPF+R+ +R + + FNN+YVKNL + TEE
Sbjct: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEE 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F E+G ITS V+ +D +G +K FG K +V +
Sbjct: 218 DLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGK 277
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE A+ LY KN++D + + LKQ FS GTI+S K+
Sbjct: 278 AQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 338 MRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 397
Query: 237 ---------------MYAKQGPGLASTIFPVHPTL----------YQRALQVYQAPDFRH 271
MY GPGL IF YQ+ L P R
Sbjct: 398 IRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQAPPAIIPPQPGFGYQQQL----VPGMRP 453
Query: 272 GGM-IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYPIS 328
GG +PN F P + R A + P+PLM + + Y YP
Sbjct: 454 GGAPMPNFFVP----MVQQGQQGQRPGGRRAGAAQQSQQPVPLMQQQMVPRGRVYRYPPG 509
Query: 329 Q-----PRAGQAAAN-----NLTNGNHRAAASNENL-----SSMLVATSPDERKDILGQR 373
+ P G A +++ R AA ++ + +S L SP++++ +LG+
Sbjct: 510 RGIPDVPMTGVAGGMLSVPYDMSGMPMRDAALSQPIPIGALASALANASPEQQRTMLGEN 569
Query: 374 LYPLVKKLK 382
LYPLV++L+
Sbjct: 570 LYPLVEQLE 578
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + + + L+ +F++ G + S +V +S GYG+V YS+P+ A A++
Sbjct: 27 YVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDMLN 86
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G+ + M + P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 87 FTPLNGSPIRIMYSHRDPSVRK-------SGSGNIFIKNLDKGIDHKALHDTFSAFGNIL 139
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S ++ D++G SKG+G K +YV +K ER+ AI +
Sbjct: 140 SCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDK 199
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+++ E +LK+ F + GTI+S +MR G +K
Sbjct: 200 TRFNNV------YVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTK 243
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 150/271 (55%), Gaps = 31/271 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN LH F+ FG I S KV G SKGYGFV
Sbjct: 109 MWSHRDPAFRKSGVGNIFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Y E+A AIEK+ G +E +++VGPF++R +R + + + N++VKNL +++T+E
Sbjct: 169 HYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTERPVDKEQHYTNVFVKNLSENLTDEE 228
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
+ + F+E G +TS I KD G SKGFG K LY RA
Sbjct: 229 VEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRA 288
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+A L+ +F+ +R+ER Y KN+ DEVD+ +L+ F+ GTI+S K+M
Sbjct: 289 QKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVM 348
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+ G SKG + E T + M K
Sbjct: 349 KDSAGKSKGFGFVCYSSPEEATRAVTEMNGK 379
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 37/185 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + + ++ ++F++ G + S ++ + GKSKG+GF+ + E A A+ L
Sbjct: 214 NVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTAL 273
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G ++ ELY G ++A+R E F+ NLYVKNL D++ ++ L
Sbjct: 274 NGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLR 333
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F+ G ITS + KD+ G SKGFG K +YVA AQ+
Sbjct: 334 AEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQR 393
Query: 159 KAERK 163
+ R+
Sbjct: 394 REVRR 398
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N +VKNL +D+ +L F+ G I S+KV+ GKSKG+GFV YS+PE A
Sbjct: 311 AKYQGM-NLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEA 369
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G + +YV RR R
Sbjct: 370 TRAVTEMNGKMLLGKPMYVALAQRREVR 397
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 221/495 (44%), Gaps = 123/495 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + AR SG N F+KNL ID+ L FS FG+I S K+ G+SKG+GFV
Sbjct: 98 MYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + ESA +AI+KL G + ++YVGPF R+ DR G+ FNN+YVKNL + TE
Sbjct: 158 QFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEA 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+G ITS V+ +D +G SKGFG K YV +
Sbjct: 218 DLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGK 277
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ + E+ KE + Y KN++D V + EL++ FS+ GTI+S K+
Sbjct: 278 AQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKV 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 338 MRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQ 397
Query: 237 ---------------MYAKQGPGLASTIF--PVHPTLYQRALQVYQ---APDFRHGGMIP 276
+Y PG+ + P++ +A YQ P R GG P
Sbjct: 398 ARPVAITPNVSPRMPLYPLGAPGIGQQLLYGQAAPSMIPQAAFGYQQHFVPGMRPGGA-P 456
Query: 277 NGFSP--------------PPPSPLFLMAPDSVTQYRGAMMNGHA-NFPMPLMLSNLQKP 321
N + P P+ + ++ + GH +P + N+Q
Sbjct: 457 NFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPLMHQQMLPRGHVYRYPPGSNMQNIQLA 516
Query: 322 S-----YNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYP 376
+Y I QP QA A+ L N +P++++ +LG+ LYP
Sbjct: 517 GVPGGMVSYGIGQPMPTQALASALAN------------------ATPEQQRTMLGEALYP 558
Query: 377 LVKKLKVITHIFVKG 391
LV KL+ T V G
Sbjct: 559 LVDKLEHETAAKVTG 573
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 51/252 (20%)
Query: 4 TPNSEARLSGIG------NAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKS 54
TP ++A SG + +V +L +++ +L+ +F++ + S ++ V +Q+ S
Sbjct: 7 TPTNDAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQ--S 64
Query: 55 KGYGFVQYSTPESALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVK 109
GYG+V +S A AI+ L G T+ M P R+ S N+++K
Sbjct: 65 LGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARK-------SGAANVFIK 117
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------------- 147
NLD + + L + FS FG I S I+ DA+G SKG G
Sbjct: 118 NLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLI 177
Query: 148 -SKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSV 206
K +YV Q+K +R++ L K KN+ + E +LK F + G I+S
Sbjct: 178 NDKQVYVGPFQRKQDRESALSG-----TKFNNVYVKNLFEATTEADLKSIFGEYGAITSA 232
Query: 207 KIMRTDRGISKG 218
+MR G SKG
Sbjct: 233 VVMRDVDGKSKG 244
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD D+ + L + F++ ++ S+ I +D A S G+G YV + + K
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYG----YVNFSNARDAAK 80
Query: 164 AILRAQFERM----------------RKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
AI F + RK A KN++ +D L FS G I S
Sbjct: 81 AIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILS 140
Query: 206 VKIMRTDRGISKGH 219
KI G SKGH
Sbjct: 141 CKIATDASGQSKGH 154
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 159/291 (54%), Gaps = 37/291 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 105 MYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFV 164
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AIEKL G + ++YVGPF+R+ +R + + FNN++VKNL + T++
Sbjct: 165 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDD 224
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS V+ +D +G SK FG K YV +
Sbjct: 225 ELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGK 284
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ FS GTI+S K+
Sbjct: 285 AQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKV 344
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
MR G+S+G T E + L M K + S P++ TL QR
Sbjct: 345 MRDPNGLSRGSGFVAFSTPEEASRALLEMNGKM---VVSK--PLYVTLAQR 390
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE--- 73
+V +L + + +L+ +F++ G + S +V + S GYG+V +S P+ A A++
Sbjct: 34 YVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLN 93
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 94 FTPLNNRPIRIMYSHRDPSIRK-------SGQGNIFIKNLDRAIDHKALHDTFSTFGNIL 146
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S ++ D++G SKG+G K +YV +K ER+ A +
Sbjct: 147 SCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADK 206
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A+F + KN+++ + ELK F + GTI+S +MR G SK
Sbjct: 207 AKFNNV------FVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSK 250
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFGSKVLYVARAQKKAERK 163
+LYV +LD ++T+ L + F++ G++ S+ + +D S G+G YV + + +
Sbjct: 32 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYG----YVNFSNPQDAAR 87
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ F + + KN++ +D L FS G I S
Sbjct: 88 ALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILS 147
Query: 206 VKIMRTDRGISKGH 219
K+ G SKG+
Sbjct: 148 CKVATDSSGQSKGY 161
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 229/492 (46%), Gaps = 118/492 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS++GK S+ + D +G SKGFG K+++V
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+TI P P R Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPP-------PSP-LFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ-KPSYNY 325
P GF P P P L + P S TQ + +P + NL +PS
Sbjct: 443 -PQGFQGVPNTIRQSGPCPALRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVAT 501
Query: 326 PISQPRAG---QAAANNLTNGNHRA------------AASNENLS-SMLVATSPDERKDI 369
P PRA + AAN H A E L+ SML A P E+K +
Sbjct: 502 PA--PRAVPPYKYAAN--VRSPHPAIQPLQTPQPAVHVQGQEPLTASMLAAAPPQEQKQM 557
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 558 LGERLFPLIQTM 569
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/490 (30%), Positives = 222/490 (45%), Gaps = 120/490 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TIDN LH+ FS FG I S KV + + G+SKG+GFV
Sbjct: 120 MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A +AI+ L G + ++VGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 180 QYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKE 239
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ F E+G ITS V+ +G S+ FG K YV R
Sbjct: 240 DLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGR 299
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L++ FS G I+S K+
Sbjct: 300 AQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKV 359
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+SKG +A AQ K +R + L+ +++
Sbjct: 360 MRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 419
Query: 241 QGPGLASTIFPVHPTLYQRALQVY--QAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
P + P+ PTL R L +Y AP G P PP P F Q
Sbjct: 420 MRPAV-----PMTPTLAPR-LPMYPPMAPQQLFYGQAPPAMIPPQPGFGFQQ------QL 467
Query: 299 RGAMMNGHANFP---MPLMLSNLQKPS----------------------------YNYPI 327
M G + P +P++ Q P Y YP
Sbjct: 468 VPGMRPGGPHMPNYFVPVVQQGQQGPRPGMRRGAGAQGQQPVPPFQQQIVPRGRMYRYPT 527
Query: 328 SQPRAGQAAANNLTNGNHRA---------------AASNENLSSMLVATSPDERKDILGQ 372
+ A + G +A AA L+S L +P++++ ILG+
Sbjct: 528 GRNMPEAPAMPGVAGGMIQAYDMGGFPVRDAAVSPAAQIGTLTSALANANPEQQRTILGE 587
Query: 373 RLYPLVKKLK 382
LYPLV++L+
Sbjct: 588 NLYPLVEQLE 597
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 35/218 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ + +L+++FS+ G + S +V V S+ +S GY +V +S P A A+E
Sbjct: 49 YVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNFSNPLDAARALEV 106
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L A + + V R + GS+ N+++KNLD + + L E FS FG I S
Sbjct: 107 LNFAVLNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAI------------------LRAQ-----FE 171
++ D G SKGFG +V +++A + AI LR Q F+
Sbjct: 165 VAMDEAGQSKGFG----FVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFD 220
Query: 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + KN+++ + +L + F + G+I+S +M
Sbjct: 221 KTKFNNV-FVKNLSESTTKEDLLKVFGEYGSITSAVVM 257
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG----SKVLYVARAQKK 159
+LYV +L+ +++ L E FS+ G++ S+ + +D S G+ S L ARA +
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 160 AERKAILRAQFERMRKER---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+ M R A ++ KN++ +D L + FS GTI S K+
Sbjct: 107 LNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVA 166
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 167 MDEAGQSKG 175
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 150/271 (55%), Gaps = 31/271 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL TID+ LH FS FG+I S KV G+S+GYGFV
Sbjct: 111 MYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Q+ E+A +AI+KL G + ++YVG F+R+ +R + FNN+YVKNL + TEE
Sbjct: 171 QFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEED 230
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L F E+G+ITS VI +DA+G SK FG K YV +A
Sbjct: 231 LKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKA 290
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK+ER+ L++QFE+ KE + Y KN++D + + LK+ FS G I+S K+M
Sbjct: 291 QKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVM 350
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
R GIS+G T E + L M K
Sbjct: 351 RDPSGISRGSGFVAFSTPEEASRALAEMNGK 381
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + L IF ++G+I S+ ++ +GKSK +GFV + ++A A+E L
Sbjct: 216 NVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESL 275
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G ++ E YVG ++++R ++ S F NLY+KNLDD +++E L
Sbjct: 276 NGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLK 335
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS+FG ITS + +D +G S+G G SK LYVA AQ+
Sbjct: 336 ELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQR 395
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF +MR
Sbjct: 396 KEERRARLQAQFSQMR 411
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 42/229 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + + +L+ +F++ G + S +V +S GYG+V Y++P+ A A++ L
Sbjct: 40 YVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDILN 99
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 100 FTPFNNKPIRIMYSHRDPSIRK-------SGTGNIFIKNLDKTIDHKALHDTFSSFGNIL 152
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D++G S+G+G K +YV +K ER +
Sbjct: 153 SCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNK 212
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+++ E +LK F + G I+S IMR G SK
Sbjct: 213 KFNNV------YVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSK 255
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL +ID+ LH+ FS FG I S KV V G+SKGYGFV
Sbjct: 119 MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
QY T E+A AI+KL G + ++YVGPF+ + R G F N+YVKNL + +++E
Sbjct: 179 QYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDE 238
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG TS VI +D G SKGFG K +V +
Sbjct: 239 ELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ LY KN+++ V + +L+++F+ GTI+S K+
Sbjct: 299 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G T E T + M K
Sbjct: 359 MRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ ++ + +L+++F +FG S ++ EGKSKG+GFV + + A A++ L
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G T + E +VG ++++R E S +NLYVKNLD+ +T++ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E F+ FG ITS + +D +G S+G G +K LYVA AQ+
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 159 KAERKAILRAQFERMR 174
K +RKA L+AQF +MR
Sbjct: 405 KEDRKARLQAQFSQMR 420
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 43/236 (18%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDA 71
G + +V +L +T+ + +L + F++ G + S +V + S GYG+V Y+TP+ A A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 72 IEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
+ + L G + M P +R+ S N+++KNLD + + L E FS
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRK-------SGVGNIFIKNLDKSIDHKALHETFSA 155
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY----- 181
FG I S ++ D +G SKG+G +V +A + AI + M ++Y
Sbjct: 156 FGPILSCKVAVDPSGQSKGYG----FVQYDTDEAAQGAI--DKLNGMLLNDKQVYVGPFV 209
Query: 182 -------------------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN+++ + + EL + F + G +S IMR G SKG
Sbjct: 210 HKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 265
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARA 156
Q+G++ +LYV +LD +T+ L E F++ G++ S+ + +D S G+G YV A
Sbjct: 41 QQGTT--SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYG----YVNYA 94
Query: 157 QKKAERKAILRAQF----------------ERMRKERAE--LYKNINDEVDEIELKQYFS 198
+ +A+ F +RK KN++ +D L + FS
Sbjct: 95 TPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFS 154
Query: 199 QCGTISSVKIMRTDRGISKGH 219
G I S K+ G SKG+
Sbjct: 155 AFGPILSCKVAVDPSGQSKGY 175
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 151/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH FS FG+I S K+ G+SKGYGFV
Sbjct: 112 MYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
QY ESA AI+KL G + ++YVG F+R+ +R + F N+YVKNL + T++
Sbjct: 172 QYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDD 231
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS V+ +DA+G SK FG K YV +
Sbjct: 232 ELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGK 291
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+++FE+ KE + Y KN++D +D+ +LK+ FS+ GTI+S K+
Sbjct: 292 AQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKV 351
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR GIS+G T E + L M K
Sbjct: 352 MRDPSGISRGSGFVAFSTSEEASRALSEMNGK 383
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 108/196 (55%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + + +L ++F +FG+I S+ V+ +GKSK +GF+ + T E A A+E L
Sbjct: 218 NVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESL 277
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R QE S F NLYVKNLDD + +E L
Sbjct: 278 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 337
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FSEFG ITS + +D +G S+G G SK LYVA AQ+
Sbjct: 338 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQR 397
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF ++R
Sbjct: 398 KEERRAKLQAQFSQLR 413
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 41/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + + +L+ +F++ G + S +V +S GYG+V YS P A A+E L
Sbjct: 41 YVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLN 100
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G ++ M + P +R++ GS+ N+++KNLD + + L + FS FG I
Sbjct: 101 FTPVNGKSIRVMYSHRDPTLRKS-----GSA--NIFIKNLDKSIDNKALHDTFSSFGNIL 153
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S I+ D+NG SKG+G K +YV +K ER++
Sbjct: 154 SCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTT-- 211
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
M K + KN+++ + ELK+ F + G I+S +MR G SK
Sbjct: 212 ---GMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSK 257
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ST+DN LH+ F+ FG + S KV V G+SKGYGFV
Sbjct: 119 MFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ ESA AI L G + ++YVG F+R+ +R + S F N+YVKNL + +T E
Sbjct: 179 QFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNE 238
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + F +G ITS ++ KD G S+GFG K YV
Sbjct: 239 DLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVG 298
Query: 155 RAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVK 207
RAQ+K+ER+A L+A+FE+ R R A LY KN++D +++++LK+ FS+ G+I+S K
Sbjct: 299 RAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCK 358
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+M +G+SKG T E + L+ M K
Sbjct: 359 VMLDHQGVSKGSGFVAFSTPEEASRALKEMNGK 391
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 103/197 (52%), Gaps = 38/197 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ TI N L ++F +G I S+ V+ Q GKS+G+GFV + P+SA A+EKL
Sbjct: 225 NVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKL 284
Query: 76 QGATV-ERMELYVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEIL 120
G T + YVG R+++R E S + NLY+KNLDD++ + L
Sbjct: 285 NGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKL 344
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
E FSEFG ITS + D G SKG G K LYVA AQ
Sbjct: 345 KELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQ 404
Query: 158 KKAERKAILRAQFERMR 174
+K ERKA L+A F +R
Sbjct: 405 RKEERKARLQAHFALVR 421
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 41/230 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEK-- 74
+V +L ++ +L+ +FS+ + S +V Q +S GYG+V +S P+ A +A++
Sbjct: 48 YVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKALN 107
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S + N+++KNLD + ++L E F+ FG +
Sbjct: 108 FTPLNGKPIRIMFSHRDPSIRK-------SGYGNVFIKNLDSTLDNKLLHETFAAFGTVL 160
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI------------------LRAQFERM 173
S ++ D+NG SKG+G +V +++ +AI +R Q ER
Sbjct: 161 SCKVAVDSNGQSKGYG----FVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQ-ERT 215
Query: 174 RKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R + + KN+++ + +L++ F GTI+S +M+ G S+G
Sbjct: 216 RTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRG 265
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 159/268 (59%), Gaps = 32/268 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G+ N FVKNL +I++ L IF KFG+I S KV + GKSK +GFV
Sbjct: 103 MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ + +SA A+ L ++ +L+V F+++ +R + E + F N+YVKNL +D+TE+
Sbjct: 162 QFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTED 221
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
I+ +KFSEFGK+ ++VI KD NG S+GF GSK L+V R
Sbjct: 222 IIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGR 281
Query: 156 AQKKAERKAILRAQFERMR----KERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
AQKKAER+ +L+ + E + KE+A LY KN++ VD+ +L+++FS CG I+S K+M
Sbjct: 282 AQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVM 341
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIM 237
R D G+SKG T E L +
Sbjct: 342 RHDSGLSKGFGFVCFSTSEEAQKALTTL 369
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 229/492 (46%), Gaps = 118/492 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS++GK S+ + D +G SKGFG K+++V
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+TI P P R Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPP-------PSP-LFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ-KPSYNY 325
P GF P P P L + P S TQ + +P + NL +PS
Sbjct: 443 -PQGFQGVPNTIRQSGPRPALRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVAT 501
Query: 326 PISQPRAG---QAAANNLTNGNHRA------------AASNENLS-SMLVATSPDERKDI 369
P PRA + AAN H A E L+ SML A P E+K +
Sbjct: 502 PA--PRAVPPYKYAAN--VRSPHPAIQPLQTPQPAVHVQGQEPLTASMLAAAPPQEQKQM 557
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 558 LGERLFPLIQTM 569
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 150/274 (54%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVGP I R +R I+E + F N+YVKN+D ++T
Sbjct: 182 HYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVT 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG +TS VI +D G SKGFG K L+V
Sbjct: 242 DEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLFV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+ LR +E+ + E+ Y KN+ DEVD+ L+Q F GTI+S
Sbjct: 302 TRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSA 361
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 362 KVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNK 395
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + + Q+F +FG++ S+ + +EG+SKG+GFV + E A +E L
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ +L+V ++A+R +E S+ NLY+KNL+D++ +E L
Sbjct: 290 HDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
++F FG ITS + +D G+SKGFG +K LYV+ AQ+
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 410 REVRRQQLESQI 421
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 145/250 (58%), Gaps = 32/250 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH F FG+I S KV G+SKGYGFV
Sbjct: 199 MYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFV 258
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY E+A AIEKL G + ++YVGPF+R+ +R S FNN+YVKNL + TE+
Sbjct: 259 QYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTED 318
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+V+ +D +G SK FG K YV R
Sbjct: 319 DLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGR 378
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E A+ Y KN++D VD+ +L++ F++ GTI+S K+
Sbjct: 379 AQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKV 438
Query: 209 MRTDRGISKG 218
MR G S+G
Sbjct: 439 MRDSNGASRG 448
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNLA T L +IF KFG I S V+ +G+SK +GFV + +P+ A A++ L
Sbjct: 305 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 364
Query: 76 QGATVERMELYVGPFIRRADR-----------IQEGSS---FNNLYVKNLDDDMTEEILV 121
G E YVG ++++R +QE + NLY+KNLDD + +E L
Sbjct: 365 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 424
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E F+EFG ITS + +D+NG S+G G+K LYVA AQ+
Sbjct: 425 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQR 484
Query: 159 KAERKAILRAQFERMR 174
K +RKA L+AQF +MR
Sbjct: 485 KEDRKARLQAQFSQMR 500
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ + +L +F++ G + S +V V S+ KS GY +V Y+TP A A+E
Sbjct: 128 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNTPADAARALEM 185
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M P +R+ S N+++KNLD + + L + F FG
Sbjct: 186 LNFTPINGRPIRIMYSNRDPSLRK-------SGTANIFIKNLDKSIDNKALHDTFCVFGN 238
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL--------- 180
I S ++ D G SKG+G +V + +A AI + M ++ +
Sbjct: 239 ILSCKVATDPAGESKGYG----FVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 294
Query: 181 -------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + E +LK+ F + GTI+SV +MR G SK
Sbjct: 295 DNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSK 344
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 154/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + R SG N F+KNL ++IDN L + F+ FG + S KV V G+SKGYGFV
Sbjct: 107 MVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFV 166
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A AI +L G + E++VG F+R +RI+ S F N+YVKNL + ++E
Sbjct: 167 QFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDE 226
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FS +G ITS ++ KD +G SKGFG KV YV R
Sbjct: 227 DLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGR 286
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+K ER+A L+A+FE+ R R A LY KN++D++D+ +LK+ FS+ G+I+S K+
Sbjct: 287 AQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKV 346
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
M +G+SKG T E + L M K
Sbjct: 347 MLDQQGLSKGSGFVAFSTPEEASRALNGMNGK 378
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L + FS +G I S+ V+ Q GKSKG+GFV + +P+SA A+EKL
Sbjct: 213 NVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKL 272
Query: 76 QGATVERMELYVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEILV 121
G T YVG R+ +R E S + NLY+KNLDD + +E L
Sbjct: 273 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 332
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E FSEFG ITS + D G SKG G K LYVA AQ+
Sbjct: 333 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 392
Query: 159 KAERKAILRAQFERMR 174
+ ERKA L+A F +++
Sbjct: 393 REERKARLQAHFTQIQ 408
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 41/230 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE--- 73
+V +L ++ +L +FS+ + S +V Q + S GY +V +S P+ A +A+E
Sbjct: 36 YVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELLN 95
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P +R+ S N+++KNLD + + L E F+ FG +
Sbjct: 96 FTPLNGKAIRIMVSHRDPSMRK-------SGHANVFIKNLDTSIDNKALQETFASFGSVL 148
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERA 178
S ++ D NG SKG+G +V ++A + AI R +F R +ER
Sbjct: 149 SCKVAVDNNGQSKGYG----FVQFENEEAAQSAINRLNGMLINDKEVFVGRFVR-HQERI 203
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E KN+++ + +LK++FS G I+S +M+ G SKG
Sbjct: 204 EATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKG 253
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 159/268 (59%), Gaps = 32/268 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G+ N FVKNL +I++ L IF KFG+I S KV + GKSK +GFV
Sbjct: 103 MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ + +SA A+ L ++ +L+V F+++ +R + E + F N+YVKNL +D+TE+
Sbjct: 162 QFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTED 221
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
I+ +KFSEFGK+ ++VI KD NG S+GF GSK L+V R
Sbjct: 222 IIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGR 281
Query: 156 AQKKAERKAILRAQFERMR----KERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
AQKKAER+ +L+ + E + KE+A LY KN++ VD+ +L+++FS CG I+S K+M
Sbjct: 282 AQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVM 341
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIM 237
R D G+SKG T E L +
Sbjct: 342 RHDSGLSKGFGFVCFSTSEEAQKALTTL 369
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 36/188 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + FS+FG + + ++ GKS+G+GFV + +P+ A A+E L
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 76 QGATVERMELYVGPFIRRADRIQ----EGSSFN---------NLYVKNLDDDMTEEILVE 122
GA + +L+VG ++A+R + E N NLYVKNLD + ++ L E
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 123 KFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
FS G+ITS + + +G SKGFG + LY+A AQ+K
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 160 AERKAILR 167
+R+ +LR
Sbjct: 388 EDRQRVLR 395
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 159/268 (59%), Gaps = 32/268 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G+ N FVKNL +I++ L IF KFG+I S KV + GKSK +GFV
Sbjct: 103 MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ + +SA A+ L ++ +L+V F+++ +R + E + F N+YVKNL +D+TE+
Sbjct: 162 QFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTED 221
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
I+ +KFSEFGK+ ++VI KD NG S+GF GSK L+V R
Sbjct: 222 IIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGR 281
Query: 156 AQKKAERKAILRAQFERMR----KERAE-LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
AQKKAER+ +L+ + E + KE+A LY KN++ VD+ +L+++FS CG I+S K+M
Sbjct: 282 AQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVM 341
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIM 237
R D G+SKG T E L +
Sbjct: 342 RHDSGLSKGFGFVCFSTSEEAQKALTTL 369
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 36/186 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + FS+FG + + ++ GKS+G+GFV + +P+ A A+E L
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 76 QGATVERMELYVGPFIRRADRIQ----EGSSFN---------NLYVKNLDDDMTEEILVE 122
GA + +L+VG ++A+R + E N NLYVKNLD + ++ L E
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 123 KFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
FS G+ITS + + +G SKGFG + LY+A AQ+K
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 160 AERKAI 165
+R+ I
Sbjct: 388 EDRQRI 393
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +++D+ KL + FS G I S+KV+ G SKG+GFV +ST E A A+ L
Sbjct: 310 NLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTL 369
Query: 76 QGATVERMELYVGPFIRRADR-------IQEGSSFNNLYVKN 110
G + LY+ R+ DR Q+G++ N Y +N
Sbjct: 370 NGTLLHGRSLYIAMAQRKEDRQRIPMKQAQQGNTNNWGYQQN 411
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 154/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + R SG N F+KNL ++IDN L + F+ FG + S KV V G+SKGYGFV
Sbjct: 97 MVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFV 156
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A AI +L G + E++VG F+R +RI+ S F N+YVKNL + ++E
Sbjct: 157 QFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDE 216
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FS +G ITS ++ KD +G SKGFG KV YV R
Sbjct: 217 DLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGR 276
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+K ER+A L+A+FE+ R R A LY KN++D++D+ +LK+ FS+ G+I+S K+
Sbjct: 277 AQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKV 336
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
M +G+SKG T E + L M K
Sbjct: 337 MLDQQGLSKGSGFVAFSTPEEASRALNGMNGK 368
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L + FS +G I S+ V+ Q GKSKG+GFV + +P+SA A+EKL
Sbjct: 203 NVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKL 262
Query: 76 QGATVERMELYVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEILV 121
G T YVG R+ +R E S + NLY+KNLDD + +E L
Sbjct: 263 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 322
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E FSEFG ITS + D G SKG G K LYVA AQ+
Sbjct: 323 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 382
Query: 159 KAERKAILRAQFERMR 174
+ ERKA L+A F +++
Sbjct: 383 REERKARLQAHFTQIQ 398
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 41/230 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIE--- 73
+V +L ++ +L +FS+ + S +V Q + S GY +V +S P+ A +A+E
Sbjct: 26 YVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLN 85
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P +R+ S N+++KNLD + + L E F+ FG +
Sbjct: 86 FTPLNGKAIRIMVSHRDPSMRK-------SGHANVFIKNLDTSIDNKALQETFASFGPVL 138
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERA 178
S ++ D NG SKG+G +V ++A + AI R +F R +ER
Sbjct: 139 SCKVAVDNNGQSKGYG----FVQFENEEAAQSAINRLNGMLINDKEVFVGRFVR-HQERI 193
Query: 179 E----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E KN+++ + +LK++FS G+I+S +M+ G SKG
Sbjct: 194 EATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKG 243
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 156/475 (32%), Positives = 226/475 (47%), Gaps = 104/475 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH FS FG+I S K+ G+SKGYGFV
Sbjct: 92 MYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA +AI+KL G + ++YVG F+R+ +R + FNN+YVKNL + TEE
Sbjct: 152 QFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEE 211
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D +G SK FG K YV +
Sbjct: 212 DLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGK 271
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE + LY KN++D + + +LK+ FS+ GTI+S K+
Sbjct: 272 AQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKV 331
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR GIS+G +A+AQ K ER + L+ +++
Sbjct: 332 MRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 391
Query: 241 QGP-GLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPP---PPSPLFLMAPDSVT 296
P +A ++ P P +Y AP G + G PP PP F V
Sbjct: 392 MRPVSMAPSVAPRMP-MYPPG-----APGL--GQQLFYGQGPPAIIPPQAGFGYQQQLVP 443
Query: 297 QYR--GAMMNGHANFPMPLMLSN--------------LQKPSYNYPISQ----PRAGQA- 335
R GA M NF +PL+ +Q+ P+ Q PR G+
Sbjct: 444 GMRPGGAPM---PNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVY 500
Query: 336 ---AANNLTNGNHRAAASNENL-----SSMLVATSPDERKDILGQRLYPLVKKLK 382
N+ + AA + + +S L +PD+++ +LG+ LYPLV +L+
Sbjct: 501 RYPPGRNMPDVPMPDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLE 555
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 46/239 (19%)
Query: 12 SGIGNA---FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPES 67
+G+ N +V +L I + +L+ +F + G + S +V +S GYG+V YS P+
Sbjct: 12 NGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQD 71
Query: 68 ALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVE 122
A A++ L G + M + P IR+ S N+++KNLD + + L +
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRK-------SGTANIFIKNLDKSIDNKALHD 124
Query: 123 KFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
FS FG I S I+ D +G SKG+G K +YV + +K
Sbjct: 125 TFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRK 184
Query: 160 AERKAIL-RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
ER+ L + +F + KN+++ E +LK F + G I+SV +MR G SK
Sbjct: 185 QERETALNKTKFNNV------YVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSK 237
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 182/364 (50%), Gaps = 79/364 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG SK LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R + LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y + G+ Q+ Q++Q P+ G +P PPS F P TQ
Sbjct: 376 YMRHMTGMR----------MQQLGQMFQ-PNTTGGFFVPT----IPPSQRFF-GPQMTTQ 419
Query: 298 YRGA 301
R A
Sbjct: 420 MRNA 423
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 53/249 (21%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L + FS G + S +V V+++ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLIRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKGIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
FG I S ++ D G SKG+G K +YV
Sbjct: 112 AFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVG-------- 163
Query: 163 KAILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
K I R + E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SK
Sbjct: 164 KFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSK 223
Query: 218 GHCMAIAQT 226
G +T
Sbjct: 224 GFGFVAYET 232
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL +ID+ LH+ FS FG I S KV V G+SKGYGFV
Sbjct: 113 MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
QY T E+A AI+KL G + ++YVGPF+ + R G F N+YVKNL + +++E
Sbjct: 173 QYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDE 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG TS VI +D G SKGFG K +V +
Sbjct: 233 ELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 292
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ LY KN+++ V + +L+++F+ GTI+S K+
Sbjct: 293 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 352
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G T E + + M K
Sbjct: 353 MRDPTGVSRGSGFVAFSTPEEASRAITEMNGK 384
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ ++ + +L+++F +FG S ++ EGKSKG+GFV + + A A++ L
Sbjct: 219 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 278
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G T + E +VG ++++R E S +NLYVKNLD+ +T++ L
Sbjct: 279 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 338
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E F+ FG ITS + +D G S+G G +K LYVA AQ+
Sbjct: 339 EHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQR 398
Query: 159 KAERKAILRAQFERMR 174
K +RKA L+AQF +MR
Sbjct: 399 KEDRKARLQAQFSQMR 414
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 43/236 (18%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDA 71
G + +V +L +T+ + +L + FS+ G + S +V + S GYG+V Y+TP+ A A
Sbjct: 37 GTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 96
Query: 72 IEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
+ + L G + M P +R+ S N+++KNLD + + L E FS
Sbjct: 97 LNELNFMALNGRAIRVMYSVRDPSLRK-------SGVGNIFIKNLDKSIDHKALHETFSA 149
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY----- 181
FG I S ++ D +G SKG+G +V +A ++AI + M ++Y
Sbjct: 150 FGPILSCKVAVDPSGQSKGYG----FVQYDTDEAAQRAI--DKLNGMLLNDKQVYVGPFV 203
Query: 182 -------------------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN+++ + + EL + F + G +S IMR G SKG
Sbjct: 204 HKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG 259
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARA 156
Q+G++ +LYV +LD +T+ L E FS+ G++ S+ + +D S G+G YV A
Sbjct: 35 QQGTT--SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYG----YVNYA 88
Query: 157 QKKAERKAILRAQF----------------ERMRKERAE--LYKNINDEVDEIELKQYFS 198
+ +A+ F +RK KN++ +D L + FS
Sbjct: 89 TPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFS 148
Query: 199 QCGTISSVKIMRTDRGISKGH 219
G I S K+ G SKG+
Sbjct: 149 AFGPILSCKVAVDPSGQSKGY 169
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 224/488 (45%), Gaps = 126/488 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFP-------------------MPLMLSNL------------QKPS 322
Q +G G P +P + NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGVPTAVQNLAPRAAVAAAAPRAVAP 493
Query: 323 YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
Y Y P QP +A Q A + G A SML A P E+K +LG+R
Sbjct: 494 YKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQEQKQMLGER 545
Query: 374 LYPLVKKL 381
L+PL++ +
Sbjct: 546 LFPLIQTM 553
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 152/496 (30%), Positives = 223/496 (44%), Gaps = 127/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------------ 322
P GF PS + P ++ N A+ +P + P+
Sbjct: 443 -PQGFQ-GMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVA 500
Query: 323 ---------YNY--------PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE 365
Y Y P QP Q A + G A SML A P E
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVH--VQGQEPLTA------SMLAAAPPQE 552
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 553 QKQMLGERLFPLIQTM 568
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/483 (29%), Positives = 214/483 (44%), Gaps = 101/483 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH F+ FG + SSKV V G+SKGYGFV
Sbjct: 79 MFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFV 138
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ-EGS-SFNNLYVKNLDDDMTEE 118
Q+ ESA +AI++L G + ++YVG F+ R +R Q +GS F N+YVKN + T+E
Sbjct: 139 QFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDE 198
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + FS +G ITS V+ KD +G S+ FG KVLYV
Sbjct: 199 DLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVG 258
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVK 207
RAQ+KAER+A L+A+FE R + E Y KN++ +++ +LK+ FS+ GTI+S K
Sbjct: 259 RAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCK 318
Query: 208 IMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYA 239
+M G SKG+ +A+AQ K ER + L ++
Sbjct: 319 VMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQRKEERKALLEAQFS 378
Query: 240 KQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFL---------- 289
+ A T P +Y + +G P+ +P P F
Sbjct: 379 QMHALYAITHLPTGIPVYHPGAPRHGPQALHYGQGAPSLVAPQPTGYGFQQQLLPGMHPG 438
Query: 290 MAPDSVTQYR--------------------------GAMMNGHANFPMPLMLSNLQKPSY 323
+AP+ + Y G M NG ++ + P
Sbjct: 439 VAPNFIMPYHRQRQVPPRLRNLHRNQMLHLNSSQGFGYMGNGQNGMDPSVVPHGIVAPMM 498
Query: 324 NYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLKV 383
P G + T H + + +S L + +P+ + +L + LYPLV ++
Sbjct: 499 PLPFD----GSGISAAPTYNQHPGGSLSNTFASALASATPENQHLMLAEHLYPLVDEITK 554
Query: 384 ITH 386
H
Sbjct: 555 NHH 557
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 40/234 (17%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
SG + +V +L +D +L Q+F++ G I S +V + +S GY +V + P+ A +A
Sbjct: 3 SGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANA 62
Query: 72 IEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
+E L G ++ M P IR+ S + N+++KNLD + + L + F+
Sbjct: 63 MEHLNFTPLNGKSIRVMFSNRDPSIRK-------SGYANVFIKNLDISIDNKTLHDTFAA 115
Query: 127 FGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK 163
FG + S ++ D+ G SKG+G K +YV + E
Sbjct: 116 FGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQE-- 173
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
RAQ + K KN ++ + +L+Q FS GTI+S +M+ G S+
Sbjct: 174 ---RAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSR 224
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 182/364 (50%), Gaps = 79/364 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG SK LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R + LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y + G+ Q+ Q++Q P+ G +P PPS F P TQ
Sbjct: 376 YMRHMTGMR----------MQQLGQMFQ-PNTTGGFFVPT----IPPSQRFF-GPQMTTQ 419
Query: 298 YRGA 301
R A
Sbjct: 420 MRNA 423
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 37/241 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L + FS G + S +V V+++ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLIRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKGIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG--------SKVLYVAR-------AQKKAERKAILRAQF 170
FG I S ++ D G SKG+G + + + R +K K I R +
Sbjct: 112 AFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQ 225
E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG +
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYE 231
Query: 226 T 226
T
Sbjct: 232 T 232
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 159/293 (54%), Gaps = 39/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL ++IDN LH FS FG+I S K+ + + G SKGYGFV
Sbjct: 113 MWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I R +R Q + F N+YVKNLD+ +
Sbjct: 173 HYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESIN 232
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E FS+FG ITS ++ D G SKGFG K LYV
Sbjct: 233 DEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYV 292
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK ER+ LR Q+E+ + E+ Y KN++D++D+ +L+Q FS G I+S
Sbjct: 293 ARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSA 352
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M ++G SKG + E T + M G + S P++ L QR
Sbjct: 353 KVMCDEKGTSKGFGFVCFSSPDEATKAVTEM---NGRMIGSK--PIYVALAQR 400
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 177/332 (53%), Gaps = 50/332 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL +IDN L+ F++FG+I S KV V G+S+GYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ++A AI+++ G + +++VGPF+RR +R G + FNN+YVKNL D T++
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDD 230
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG I+S V+ +D G SK FG K YV R
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA++++ RKER++ Y KN++D +D+ +L++ F GTI S K+
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--------A 260
MR +G SKG T E R M G +A+ P++ L Q+ A
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEAN---RAMTEMNGRMVANK--PIYVALAQKRDERRRFNA 405
Query: 261 LQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAP 292
Q AP FR +P G P S + + P
Sbjct: 406 AQAQFAP-FR----VPVGLGPAVASSVPMFHP 432
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + +L+ +F++ + S +V ++S+ +S GY +V Y+T + A A+E
Sbjct: 40 YVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISK--RSLGYAYVNYNTGQDASRALEM 97
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M + P IR+ S N+++KNLD + + L + F++FG
Sbjct: 98 LNFSLVNGKPIRIMFSHRDPSIRK-------SGMANIFIKNLDKSIDNKALYDTFAQFGN 150
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ----FER-------MRKERA 178
I S ++ D++G S+G+G +V Q+ A + AI + E+ +R++
Sbjct: 151 ILSCKVAVDSSGQSRGYG----FVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQER 206
Query: 179 EL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+L KN+ D + +LK+ F + G ISS +MR G SK
Sbjct: 207 DLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSK 256
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 206/443 (46%), Gaps = 105/443 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 130 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 189 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 248
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 249 DERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 309 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 368
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 369 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 427
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 428 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 463
Query: 299 RGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSML 358
R A +P P ++ L +PS + R A +SML
Sbjct: 464 RAAY------YP-PSQIAQL-RPSPRWTAQGARPQPAV---------HVQGQEPLTASML 506
Query: 359 VATSPDERKDILGQRLYPLVKKL 381
+ P E+K +LG+RL+PL++ +
Sbjct: 507 ASAPPQEQKQMLGERLFPLIQAM 529
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 150/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH FS FG+I S K+ G+SKGYGFV
Sbjct: 92 MYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA +AI+KL G + ++YVG F+R+ +R + FNN+YVKNL + TEE
Sbjct: 152 QFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEE 211
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D +G SK FG K YV +
Sbjct: 212 DLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGK 271
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE + LY KN++D + + +LK+ FS+ GTI+S K+
Sbjct: 272 AQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKV 331
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR GIS+G T E + L M K
Sbjct: 332 MRDPSGISRGSGFVAFSTSEEASRALTEMNGK 363
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + L IF +FG I S V+ +GKSK +GFV + + A +A+E L
Sbjct: 198 NVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEAL 257
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++ +R ++ F NLY+KNLDD + ++ L
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLK 317
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FSEFG ITS + +D +G S+G G SK LYVA AQ+
Sbjct: 318 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQR 377
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF +MR
Sbjct: 378 KEERRARLQAQFSQMR 393
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 46/239 (19%)
Query: 12 SGIGNA---FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPES 67
+G+ N +V +L I + +L+ +F + G + S +V +S GYG+V YS P+
Sbjct: 12 NGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQD 71
Query: 68 ALDAIE-----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVE 122
A A++ L G + M + P IR+ S N+++KNLD + + L +
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRK-------SGTANIFIKNLDKSIDNKALHD 124
Query: 123 KFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
FS FG I S I+ D +G SKG+G K +YV + +K
Sbjct: 125 TFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRK 184
Query: 160 AERKAIL-RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
ER+ L + +F + KN+++ E +LK F + G I+SV +MR G SK
Sbjct: 185 QERETALNKTKFNNV------YVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSK 237
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 177/332 (53%), Gaps = 50/332 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL +IDN L+ F++FG+I S KV V G+S+GYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
Q+ ++A AI+++ G + +++VGPF+RR +R G + FNN+YVKNL D T++
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDD 230
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG I+S V+ +D G SK FG K YV R
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+A LRA++++ RKER++ Y KN++D +D+ +L++ F GTI S K+
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--------A 260
MR +G SKG T E R M G +A+ P++ L Q+ A
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEAN---RAMTEMNGRMVANK--PIYVALAQKRDERRRFNA 405
Query: 261 LQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAP 292
Q AP FR +P G P S + + P
Sbjct: 406 AQAQFAP-FR----VPVGLGPAVASSVPMFHP 432
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + +L+ +F++ + S +V ++S+ +S GY +V Y+T + A A+E
Sbjct: 40 YVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISK--RSLGYAYVNYNTGQDASRALEM 97
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M + P IR+ S N+++KNLD + + L + F++FG
Sbjct: 98 LNFSLVNGKPIRIMFSHRDPSIRK-------SGMANIFIKNLDKSIDNKALYDTFAQFGN 150
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ----FER-------MRKERA 178
I S ++ D++G S+G+G +V Q+ A + AI + E+ +R++
Sbjct: 151 ILSCKVAVDSSGQSRGYG----FVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQER 206
Query: 179 EL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+L KN+ D + +LK+ F + G ISS +MR G SK
Sbjct: 207 DLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSK 256
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L+ F FG+I S KV G+SKGYGFV
Sbjct: 114 MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY E+A AI+KL G + ++YVGPFIR+ +R FNN+YVKNL ++ TE+
Sbjct: 174 QYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTED 233
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS V+ ++ +G SK FG K YV R
Sbjct: 234 DLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGR 293
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E A+ Y KN++D VD+ +L++ F++ GTI+S K+
Sbjct: 294 AQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKV 353
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G ++ + + L M +K
Sbjct: 354 MRDSNGVSRGSGFVAFKSAEDASRALAEMNSK 385
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ L +IF KFG I S+ V+ +G+SK +GFV + +P+ A A+++L
Sbjct: 220 NVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQEL 279
Query: 76 QGATVERMELYVGPFIRRADR-----------IQEGSS---FNNLYVKNLDDDMTEEILV 121
G + E YVG ++++R +QE + NLY+KNLDD + ++ L
Sbjct: 280 NGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLR 339
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E F+E+G ITS + +D+NG S+G GSK LYVA AQ+
Sbjct: 340 ELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQR 399
Query: 159 KAERKAILRAQFERMR 174
K +RKA L+AQF ++R
Sbjct: 400 KEDRKARLQAQFSQLR 415
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 39/228 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L ++ + +L +F++ G + S +V +S GY +V YS+P A A+E L
Sbjct: 43 YVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEMLN 102
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P +R+ S N+++KNLD + + L + F FG I
Sbjct: 103 FTPINGKPIRIMYSNRDPSLRK-------SGTANIFIKNLDKSIDNKALYDTFCVFGNIL 155
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL----------- 180
S ++ DA+G SKG+G +V + +A + AI + M ++ +
Sbjct: 156 SCKVATDASGESKGYG----FVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDN 211
Query: 181 -----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E +LK+ F + GTI+S +MR G SK
Sbjct: 212 SPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSK 259
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 150/249 (60%), Gaps = 31/249 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN LH FS FG I S +VV+ G SKGYGFV
Sbjct: 100 MYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFV 159
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Q+ ESA AIEK+ G + ++ V PFIR+ +R S +FNN+YVKNL + T+E
Sbjct: 160 QFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDED 219
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + F+ FG I+S V+ +DA+G SK FG K YV RA
Sbjct: 220 LRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRA 279
Query: 157 QKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKK+ER+A L+A+FE++RKE+ E LY KNI+D +D+ +L++ F+ GT++S K+M
Sbjct: 280 QKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVM 339
Query: 210 RTDRGISKG 218
++ +G S G
Sbjct: 340 KSPQGQSMG 348
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNLA + L ++F+ FG I S+ V+ +GKSK +GFV + + A +A+E L
Sbjct: 205 NVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENL 264
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R E + F NLY+KN+DD + +E L
Sbjct: 265 NGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLR 324
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E F+ FG +TS + K G S G GSK LYVA AQ+
Sbjct: 325 ELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQR 384
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF +M+
Sbjct: 385 KEERRARLQAQFAQMQ 400
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E + G+ N ++KN+ +ID+ KL ++F+ FG + S KV+ S +G+S G GFV +S PE
Sbjct: 301 EEKFQGV-NLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEE 359
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADR 96
A+ A+ + G V LYV R+ +R
Sbjct: 360 AMQAVNDMNGKMVGSKPLYVALAQRKEER 388
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + +L+++F++ G + S +V KS GY +V Y T + A A+E L
Sbjct: 29 YVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELLN 88
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G + M + P IR+ S N+++KNL+ + + L + FS FG I
Sbjct: 89 FTLVKGKPIRIMYSHRDPSIRK-------SGAANIFIKNLEKSIDNKALHDTFSAFGTIL 141
Query: 132 SLVISKDANGTSKGFG--------------SKVLYVARAQKKAERKAILRAQFERM--RK 175
S + D G SKG+G KV + ++ +R Q M K
Sbjct: 142 SCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSK 201
Query: 176 ERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+Y KN+ + + +L++ F+ G ISS +MR G SK
Sbjct: 202 NFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSK 244
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD D++E L E F++ G++ S+ + +D T K G + Q ++
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLM-TKKSLGYAYVNYGTHQDASQALE 85
Query: 165 ILRAQFER--------------MRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+L + +RK A KN+ +D L FS GTI S ++
Sbjct: 86 LLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRV 145
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRI 236
+ D G SKG+ Q ++E ++ + I
Sbjct: 146 VMDDAGNSKGY--GFVQFEKEESAQIAI 171
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 222/477 (46%), Gaps = 100/477 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +D +
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E+L E F ++G+ITS + +G+S+GFG K LY
Sbjct: 205 DEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQ 383
Query: 238 YAK--------------QGPGLASTIFPVHPTLYQ-----RALQVYQAPDFR-HGGMIPN 277
Y + Q G P P + + Q+ +P + + PN
Sbjct: 384 YMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPN 443
Query: 278 GFSP----PPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAG 333
S P P F AP Q A+ + P+ S PI P++G
Sbjct: 444 AQSAASAYPNMQPPFRPAPRGPAQ--AALRSSMGARPITGQQGVATAASIRAPIV-PQSG 500
Query: 334 QAAANNLTNGNHRAAA--------SNENLSSMLVATSP-DERKDILGQRLYPLVKKL 381
+ A T+ A E L++ ++A +P E+K +LG+RL+PL++++
Sbjct: 501 RPAGYKYTSNMRNPPAPQPAVHIQGQEPLTTTMLAAAPLQEQKQMLGERLFPLIQRM 557
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 35/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L S I L + FS G + S +V +S GY +V + P A A+
Sbjct: 10 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E + +G + M P +R+ S N+++KNLD + + + + FS F
Sbjct: 70 EGMNFDIIKGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKTIDNKAMYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQFER 172
G I S +++D G SKG+G A K+ K I R + E+
Sbjct: 123 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 173 MRKERAELYKNI------NDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+A+L+ N+ D DE+ L++ F + G I+S K+M + G S+G
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDFSDEM-LREMFEKYGRITSHKVMYKEDGSSRG 233
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDETGASKGY 141
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 149/484 (30%), Positives = 219/484 (45%), Gaps = 110/484 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D +G S+GFG K ++V
Sbjct: 204 DERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL---------------ASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNG----- 278
++ G+ + P P R Y AP+ + M PN
Sbjct: 383 MQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRT--TYYAPN-QLAQMRPNPRWQQQ 439
Query: 279 ---------------FSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK--P 321
P P + L M+P S TQ G G + P P + + + P
Sbjct: 440 GGRSQGGFQAMPSSLRQPGPRANLRHMSPSSSTQ--GPRAGGQSMGPRPSVGVSGPRAMP 497
Query: 322 SYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPL 377
Y Y P+ Q A T +SML A P E+K +LG+RL+PL
Sbjct: 498 PYKYATGVRNPNPQVVQPIALQQTQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPL 557
Query: 378 VKKL 381
++ +
Sbjct: 558 IQAM 561
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV +Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFSQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQREAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 222/480 (46%), Gaps = 99/480 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L+ F FG+I S KV G+SKGYGFV
Sbjct: 108 MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFV 167
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY E+A AIEKL G + ++YVGPFIR+ +R + FNN++VKNL + TE+
Sbjct: 168 QYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTED 227
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+V+ ++ +G SK FG K YV R
Sbjct: 228 DLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGR 287
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E A+ Y KN++D VD+ +L++ F++ G I+S K+
Sbjct: 288 AQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKV 347
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G S+G +A+AQ K +R + L+ +++
Sbjct: 348 MRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQ 407
Query: 241 QGP-GLASTIFP----VHPTLYQRALQVYQA----------PDFRHGGMIPNGFSPPPPS 285
P +A T+ P P + Q++ P F + G P P
Sbjct: 408 LRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQPGFGFQQPLMPGMRPGAPM 467
Query: 286 PLFLMA-------PDSVTQYRGAMMNGHANFPM--PLMLSNLQKPSYNYPISQPR----- 331
P F+M P + R + PM M++ + Y YP +
Sbjct: 468 PNFMMPMVQQGQQPQRPSGRRAGTGGMQQSMPMGQQQMIARGGR-GYRYPTGRGMPDPAM 526
Query: 332 ----AGQAAANNLTNGNHRAAASNE-----NLSSMLVATSPDERKDILGQRLYPLVKKLK 382
G + + R A +++ L++ L PD+++ +LG+ LYPLV +L+
Sbjct: 527 HGVGGGMPSPYEIGGMPMRDAGASQPVPIGALATALANAPPDQQRMMLGENLYPLVDQLE 586
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 39/228 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L ++ + +L +F++ G + S +V KS GY +V Y+TP A A+E L
Sbjct: 37 YVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEMLN 96
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P +R+ S N+++KNLD + + L + F FG I
Sbjct: 97 FTPINGRPIRIMYSNRDPSLRK-------SGTANIFIKNLDKSIDNKALYDTFCVFGNIL 149
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERM------------RKERAE 179
S ++ DA+G SKG+G +V + +A AI + M ++ER
Sbjct: 150 SCKVATDASGESKGYG----FVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDN 205
Query: 180 ----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E +L++ F + GTI+SV +MR G SK
Sbjct: 206 SPGNVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSK 253
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/443 (32%), Positives = 207/443 (46%), Gaps = 105/443 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 60 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 118
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 119 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 178
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 179 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 239 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 298
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 299 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 357
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F+ A TQ
Sbjct: 358 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYFIAAIPQ-TQN 393
Query: 299 RGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSML 358
R A +P P ++ L +PS + R A G A SML
Sbjct: 394 RAAY------YP-PSQIAQL-RPSPRWTAQGARPHPAVH---VQGQEPLTA------SML 436
Query: 359 VATSPDERKDILGQRLYPLVKKL 381
+ P E+K +LG+RL+PL++ +
Sbjct: 437 ASAPPQEQKQMLGERLFPLIQAM 459
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 158/508 (31%), Positives = 225/508 (44%), Gaps = 138/508 (27%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Query: 275 IPNGF---------SPPPPSPLFLMAPDSVTQYRGAMMNGHANFP------------MPL 313
P GF S P P+ L S R AM G A +P
Sbjct: 443 -PQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 501
Query: 314 MLSNL------------QKPSYNY--------PISQPRAGQAAANNLTNGNHRAAASNEN 353
+ NL Y Y P QP Q A + G A
Sbjct: 502 AVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVH--VQGQEPLTA---- 555
Query: 354 LSSMLVATSPDERKDILGQRLYPLVKKL 381
SML A P E+K +LG+RL+PL++ +
Sbjct: 556 --SMLAAAPPQEQKQMLGERLFPLIQTM 581
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 161/291 (55%), Gaps = 37/291 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 99 MYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFV 158
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + E+A AIEKL G + ++YVGPF+R+ +R + + FNN++VKNL + EE
Sbjct: 159 QFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEE 218
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F EFG ITS+V+ +D +G S+ FG K +V +
Sbjct: 219 DLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGK 278
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE A+ LY KN++D + + ++K+ FS GTI+S K+
Sbjct: 279 AQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKV 338
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
MR GIS+G T E + L M K +AS P++ L QR
Sbjct: 339 MRDPNGISRGSGFVAFSTPEEASRALLEMNGKM---VASK--PLYVALAQR 384
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 91/188 (48%), Gaps = 37/188 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ T L++ F +FG I S V+ +GKS+ +GFV + + A A E L
Sbjct: 205 NVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEAL 264
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
G + E +VG ++ +R E F NLY+KNLDD + +E +
Sbjct: 265 NGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIK 324
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FG ITS + +D NG S+G G SK LYVA AQ+
Sbjct: 325 ELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQR 384
Query: 159 KAERKAIL 166
K +R+A L
Sbjct: 385 KEDRRARL 392
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 39/228 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L + + + +L+ +F++ G + S +V + S GYG+V YS P+ A A+E L
Sbjct: 28 YVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEVLN 87
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G+ + M + P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 88 FTPVNGSPIRVMYSHRDPSVRK-------SGAGNIFIKNLDKAIDHKALHDTFSVFGNIL 140
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI------------------LRAQFERM 173
S ++ D +G SKG+G +V ++A +KAI LR Q
Sbjct: 141 SCKVATDPSGQSKGYG----FVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDT 196
Query: 174 RKERAE----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
++ KN+++ E +L + F + GTI+SV +MR G S+
Sbjct: 197 ATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSR 244
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 210/457 (45%), Gaps = 108/457 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 72 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 130
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 131 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 190
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D +G SKGFG + +YV
Sbjct: 191 DEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 250
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 251 GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 310
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 311 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 369
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 370 ------------------MQRMATVRAVPN-----PVLNPYQPAPPSGYF-MAAIPQTQN 405
Query: 299 RGAM--MNGHANF-PMPLMLSNLQKP-SYNYP----------ISQPRAGQAAANNLTNGN 344
R A N A P P + + SY Y SQP+ L G
Sbjct: 406 RAAYYSANQLAQLRPSPRWNDSRECAHSYKYAAGVRNPQQHMASQPQVAMQQPAVLVQGQ 465
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
A SML + P E+K +LG+RL+PL++ +
Sbjct: 466 EPLTA------SMLASAPPQEQKQMLGERLFPLIQDV 496
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 151/500 (30%), Positives = 220/500 (44%), Gaps = 115/500 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 72 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 130
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 131 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 190
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D G SKGFG K+++V
Sbjct: 191 DERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFV 250
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 251 GRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 310
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 311 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 369
Query: 239 AKQ----------------GPGLASTIFPVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ P P P R Q+ P ++ GG
Sbjct: 370 MQRIAGMRALPANAILNQFQPAAGGYFMPAVPQAQSRPPYYAPNQMTQIRPNPRWQQGGR 429
Query: 275 IPNGFSPPP------PSP-LFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK------- 320
P GF P P P L +AP Q + +P NL
Sbjct: 430 -PQGFQGMPNMRQSGPRPNLRHLAPAGNAQASRGLPGAPQRVGIPPTGPNLAPRPPAAAQ 488
Query: 321 -----PSYNYPISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQR 373
P Y Y S R+ A L + +SML A P E+K +LG+R
Sbjct: 489 VPRAVPPYKY-ASSVRSPHPAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGER 547
Query: 374 LYPLVKKLKVITHIFVKGQF 393
L+PL++ + H+ + G+
Sbjct: 548 LFPLIQAM----HLSLAGKI 563
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 161/308 (52%), Gaps = 63/308 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SGIGN F+KNL TIDN ++ FS FG+I S KV +G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AIEK+ G + ++YVG FI R +R ++ F N+YVKN DD+
Sbjct: 136 HFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLFTNVYVKNFGDDVD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SK FG K LY
Sbjct: 196 DEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R E LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDERLRKEFSLFGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 316 AKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQRKEDRKAHLASQ 375
Query: 238 YAKQGPGL 245
Y + G+
Sbjct: 376 YMRHMAGM 383
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+ E L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVI-TRRSLG--YAYVNFQQPADAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ +R + + KN++ +D + FS G I S
Sbjct: 60 LDTMNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ D+G SKG+
Sbjct: 120 KVATDDKGTSKGY 132
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 164/309 (53%), Gaps = 65/309 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+Y+KN D+
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYIKNFTDEFD 195
Query: 117 EEILVEKFSEFGKITSL-VISKDANGTSKGFG------------------------SKVL 151
+E L E F +GKITS V+SKD +G SKGFG K L
Sbjct: 196 DEKLKENFEPYGKITSYKVMSKD-DGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTL 254
Query: 152 YVARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTIS 204
YVARAQKKAER+ L+ +FE ++K+R E LY KN++D +D+ L++ FS GTI+
Sbjct: 255 YVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTIT 314
Query: 205 SVKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRI 236
S K+M + G SKG C +A+AQ K ER ++L
Sbjct: 315 SAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLAS 374
Query: 237 MYAKQGPGL 245
Y + G+
Sbjct: 375 QYMRHMTGM 383
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 53/241 (21%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L I+ L + FS G + S +V VV++ +S GY +V + P A
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAER 58
Query: 71 AIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A++ + V + + P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
FG I S ++ D G SKG+G K +YV
Sbjct: 112 AFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG-------- 163
Query: 163 KAILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
K I R + E+ E+A+L+ KN DE D+ +LK+ F G I+S K+M D G SK
Sbjct: 164 KFIPRKEREKELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSK 223
Query: 218 G 218
G
Sbjct: 224 G 224
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 165/312 (52%), Gaps = 61/312 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L+ F FG+I S KV G+SKGYGFV
Sbjct: 106 MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
QY E+A AIEKL G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 166 QYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTED 225
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+V+ +D +G SK FG K YV R
Sbjct: 226 DLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGR 285
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E A+ Y KN++D VD+ +L++ F++ GTI+S K+
Sbjct: 286 AQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKV 345
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G S+G +A+AQ K +R + L+ +++
Sbjct: 346 MRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQ 405
Query: 241 QGP-GLASTIFP 251
P +A T+ P
Sbjct: 406 MRPVPMAQTVGP 417
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ + +L +F++ G + S +V V S+ KS GY +V Y+TP A A+E
Sbjct: 35 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNTPADAARALEM 92
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M P +R+ S N+++KNLD + + L + F FG
Sbjct: 93 LNFTPINGRPIRIMYSNRDPSLRK-------SGTANIFIKNLDKSIDNKALYDTFCVFGN 145
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL--------- 180
I S ++ D G SKG+G +V + +A AI + M ++ +
Sbjct: 146 ILSCKVATDPAGESKGYG----FVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 201
Query: 181 -------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + E +LK+ F + G I+SV +MR G SK
Sbjct: 202 DNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSK 251
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 224/488 (45%), Gaps = 126/488 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFP-------------------MPLMLSNL------------QKPS 322
Q +G G P +P + NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGVPTAVPNLAPRAAVAAAAPRAVAP 493
Query: 323 YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
Y Y P QP +A Q A + G A SML A P E+K +LG+R
Sbjct: 494 YKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQEQKQMLGER 545
Query: 374 LYPLVKKL 381
L+PL++ +
Sbjct: 546 LFPLIQTM 553
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 223/499 (44%), Gaps = 131/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L++ FS FG I S KV + G+SKGYGFV
Sbjct: 118 MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ E+A AI+KL G + +++VG F+RR DR + S SF N+YVKNL ++T
Sbjct: 178 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L + F ++G I+S V+ KD +G S+ F G VLYV
Sbjct: 238 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK++R+ LR +FE+ R R E LY KN++D V++ +LK+ FS+ G ++S
Sbjct: 298 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 357
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K ER ++L+ ++
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLF 417
Query: 239 AK-QGPGLASTI-----------------FPVHPTLYQR-------------ALQVYQAP 267
+ + PG S + P HP QV P
Sbjct: 418 TQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMP 477
Query: 268 DFRHGGMIPNGFSPPP------PSPLFLMAPDSVTQYRGA-------------------M 302
R G PN P P P P V RGA
Sbjct: 478 GMRPGAGPPNFMMPFPLQRQTQPGP-------RVGFRRGANNMQQQFQQQQMLQQNASRF 530
Query: 303 MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA-SNENLSSMLVAT 361
M G N + ++ + I P A ++N +H+ + L+S L
Sbjct: 531 MGGAGN-----RRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALA 585
Query: 362 SPDERKDILGQRLYPLVKK 380
SPD+ +LG LYPLV++
Sbjct: 586 SPDKHPRMLGDHLYPLVEQ 604
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L +++ L +F++ + + +V +S GY +V ++ PE A A+E L
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 107
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A + + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 108 APIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 165
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + A K + F R R++RA
Sbjct: 166 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR-RQDRARSESGAVPSF 224
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ + ELK+ F + G ISS +M+ G S+
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 265
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +LD + E L++ F++ + +L + +D S G+ YV A + +
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYA----YVNFANPEDASR 100
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ + +R + KN++ +D L + FS GTI S
Sbjct: 101 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 160
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K+ G SKG+ Q ++E T+ I
Sbjct: 161 CKVAMDVVGRSKGY--GFVQFEKEETAQAAI 189
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 223/499 (44%), Gaps = 131/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L++ FS FG I S KV + G+SKGYGFV
Sbjct: 132 MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ E+A AI+KL G + +++VG F+RR DR + S SF N+YVKNL ++T
Sbjct: 192 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 251
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L + F ++G I+S V+ KD +G S+ F G VLYV
Sbjct: 252 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYV 311
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK++R+ LR +FE+ R R E LY KN++D V++ +LK+ FS+ G ++S
Sbjct: 312 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 371
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K ER ++L+ ++
Sbjct: 372 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLF 431
Query: 239 AK-QGPGLASTI-----------------FPVHPTLYQR-------------ALQVYQAP 267
+ + PG S + P HP QV P
Sbjct: 432 TQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMP 491
Query: 268 DFRHGGMIPNGFSPPP------PSPLFLMAPDSVTQYRGA-------------------M 302
R G PN P P P P V RGA
Sbjct: 492 GMRPGAGPPNFMMPFPLQRQTQPGP-------RVGFRRGANNMQQQFQQQQMLQQNASRF 544
Query: 303 MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA-SNENLSSMLVAT 361
M G N + ++ + I P A ++N +H+ + L+S L
Sbjct: 545 MGGAGN-----RRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALA 599
Query: 362 SPDERKDILGQRLYPLVKK 380
SPD+ +LG LYPLV++
Sbjct: 600 SPDKHPRMLGDHLYPLVEQ 618
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L +++ L +F++ + + +V +S GY +V ++ PE A A+E L
Sbjct: 62 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 121
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A + + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 122 APIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 179
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + A K + F R R++RA
Sbjct: 180 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR-RQDRARSESGAVPSF 238
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ + ELK+ F + G ISS +M+ G S+
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 279
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +LD + E L++ F++ + +L + +D S G+ YV A + +
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYA----YVNFANPEDASR 114
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ + +R + KN++ +D L + FS GTI S
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K+ G SKG+ Q ++E T+ I
Sbjct: 175 CKVAMDVVGRSKGY--GFVQFEKEETAQAAI 203
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G SKG+GFV
Sbjct: 104 MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFV 163
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + E+A AI+KL G + +++VGPF+R+ +R FNN++VKN+ + MTEE
Sbjct: 164 QFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEE 223
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D +G SK FG K YV +
Sbjct: 224 DLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGK 283
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+++FE+ KE A LY KN++D + + +LK+ F+Q GTI+S K+
Sbjct: 284 AQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKV 343
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G + E + L M +K
Sbjct: 344 MRDPNGLSRGSGFVAFSSPEEASRALAEMNSK 375
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN++ + L +IF +FG I S V+ +GKSK +GFV + + A ++E L
Sbjct: 210 NVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEAL 269
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R I+ S F NLY+KNLDD + ++ L
Sbjct: 270 NGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLK 329
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E F++FG ITS + +D NG S+G G SK LYVA AQ+
Sbjct: 330 ELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQR 389
Query: 159 KAERKAILRAQFERMR 174
K +R+A L+AQF +MR
Sbjct: 390 KEDRRARLQAQFSQMR 405
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L +++ +L+ +FS+ G + S +V +S GYG+V YS P+ A A++
Sbjct: 33 YVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLN 92
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 93 FTPLNGKPIRIMYSHRDPSIRK-------SGTGNIFIKNLDKGIDHKALHDTFSAFGNIL 145
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL-- 180
S ++ DA+G SKG G A +KA K + F R ++ + +
Sbjct: 146 SCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINK 205
Query: 181 -------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KNI++ + E +L + F + G I+SV +MR G SK
Sbjct: 206 EKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSK 249
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 222/477 (46%), Gaps = 100/477 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN ++ F+ FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +D +
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E+L E F ++G+ITS + +G+S+GFG K LY
Sbjct: 205 DEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQ 383
Query: 238 YAK--------------QGPGLASTIFPVHPTLYQ-----RALQVYQAPDFR-HGGMIPN 277
Y + Q G P P + + Q+ +P + + PN
Sbjct: 384 YMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPN 443
Query: 278 GFSP----PPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAG 333
S P P F AP Q A+ + P+ S PI P++G
Sbjct: 444 AQSAASAYPNMQPPFRPAPRGPAQ--AALRSSMGARPITGQQGVATASSIRAPIV-PQSG 500
Query: 334 QAAANNLTNGNHRAAA--------SNENLSSMLVATSP-DERKDILGQRLYPLVKKL 381
+ A T+ A E L++ ++A +P E+K +LG+RL+PL++++
Sbjct: 501 RPAGYKYTSNMRNPPAPQPAVHIQGQEPLTTTMLAAAPLQEQKQMLGERLFPLIQRM 557
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 35/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L S I L + FS G + S +V +S GY +V + P A A+
Sbjct: 10 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E + +G + M P +R+ S N+++KNLD + + + + F+ F
Sbjct: 70 EGMNFDIIKGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKTIDNKAMYDTFTAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQFER 172
G I S +++D G SKG+G A K+ K I R + E+
Sbjct: 123 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 173 MRKERAELYKNI------NDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+A+L+ N+ D DE+ L++ F + G I+S K+M + G S+G
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDFSDEM-LREMFEKYGRITSHKVMYKEDGSSRG 233
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + F+ G I S
Sbjct: 69 LEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDETGASKGY 141
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 223/499 (44%), Gaps = 131/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L++ FS FG I S KV + G+SKGYGFV
Sbjct: 118 MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ E+A AI+KL G + +++VG F+RR DR + S SF N+YVKNL ++T
Sbjct: 178 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L + F ++G I+S V+ KD +G S+ F G VLYV
Sbjct: 238 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK++R+ LR +FE+ R R E LY KN++D V++ +LK+ FS+ G ++S
Sbjct: 298 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 357
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K ER ++L+ ++
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLF 417
Query: 239 AK-QGPGLASTI-----------------FPVHPTLYQR-------------ALQVYQAP 267
+ + PG S + P HP QV P
Sbjct: 418 TQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMP 477
Query: 268 DFRHGGMIPNGFSPPP------PSPLFLMAPDSVTQYRGA-------------------M 302
R G PN P P P P V RGA
Sbjct: 478 GMRPGAGPPNFMMPFPLQRQTQPGP-------RVGFRRGANNMQQQFQQQQMLQQNASRF 530
Query: 303 MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA-SNENLSSMLVAT 361
M G N + ++ + I P A ++N +H+ + L+S L
Sbjct: 531 MGGAGN-----RRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALA 585
Query: 362 SPDERKDILGQRLYPLVKK 380
SPD+ +LG LYPLV++
Sbjct: 586 SPDKHPRMLGDHLYPLVEQ 604
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L +++ L +F++ + + +V +S GY +V ++ PE A A+E L
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 107
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A + + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 108 APIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 165
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + A K + F R R++RA
Sbjct: 166 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR-RQDRARSESGAVPSF 224
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ + ELK+ F + G ISS +M+ G S+
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 265
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +LD + E L++ F++ + +L + +D S G+ YV A + +
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYA----YVNFANPEDASR 100
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ + +R + KN++ +D L + FS GTI S
Sbjct: 101 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 160
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K+ G SKG+ Q ++E T+ I
Sbjct: 161 CKVAMDVVGRSKGY--GFVQFEKEETAQAAI 189
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 164/292 (56%), Gaps = 38/292 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL +IDN L+ FS FG+I S KV G+SKGYGFV
Sbjct: 113 MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ E+A +AI KL G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 173 QFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+V+ ++ +G S+ FG K YV R
Sbjct: 233 NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCR 292
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIE-LKQYFSQCGTISSVK 207
AQKK+ER+ L+ +FE+ KE A+ LY KN++D +D+ E LK+ F+ GTI+S K
Sbjct: 293 AQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCK 352
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
+MR G+SKG ++ + + R + A G + S P++ L QR
Sbjct: 353 VMRDLNGVSKGSGFVAFKSAEDAS---RALVAMNGKMIGSK--PLYVALAQR 399
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 23/220 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V + S GY +V +S+P A A+E L
Sbjct: 42 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLN 101
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + D S N+++KNLD + + L + FS FG I S ++
Sbjct: 102 FTPINGKPIRI--MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVA 159
Query: 137 KDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL------- 180
+ +G SKG+G + A + A K + F R ++ER +
Sbjct: 160 TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVR-KQERENVSGNPKFN 218
Query: 181 ---YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E LK+ F + G I+SV +MR G S+
Sbjct: 219 NVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSR 258
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTAQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 157/291 (53%), Gaps = 37/291 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL ID+ LH FS FG I S K+ G SKGYGFV
Sbjct: 107 MYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFV 166
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
Q+ + ESA +AI+KL G + ++YVG F+R+ DR S FNN+YVKNL + T+E
Sbjct: 167 QFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDE 226
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ F E+G ITS VI +DA+G S+ FG K YV +
Sbjct: 227 ELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGK 286
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ F++ GTI+S K+
Sbjct: 287 AQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKV 346
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
MR GI +G T E + L M K G P++ L QR
Sbjct: 347 MRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGK-----PLYVALAQR 392
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + + +L + F ++G I S+ ++ +GKS+ +GFV + P+ A A+E L
Sbjct: 213 NVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGL 272
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G V+ E YVG ++++R QE F NLY+KNLDD +++E L
Sbjct: 273 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLK 332
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E F+E+G ITS + +D G +G G K LYVA AQ+
Sbjct: 333 EMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQR 392
Query: 159 KAERKAILRAQFERMR 174
K +R+A L+AQF +MR
Sbjct: 393 KEDRRARLQAQFSQMR 408
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L +++ +L+ +F++ + S +V +S GYG+V +S P+ A A++
Sbjct: 36 YVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLN 95
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L + M + P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 96 FTPLNNRPIRIMYSHRDPSLRK-------SGTANIFIKNLDKAIDHKALHDTFSSFGLIL 148
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S I+ DA+G SKG+G K +YV +K +R+ A+ +
Sbjct: 149 SCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSK 208
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+++ + EL ++F + GTI+S IMR G S+
Sbjct: 209 TKFNNV------YVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSR 252
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 151/273 (55%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TID+ LH FS FG I S K+ G+SKGYGFV
Sbjct: 106 MYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ +SA +AI+KL G + +++VG F+R+ DR + + FNN+YVKNL + TE+
Sbjct: 166 QFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTED 225
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L +F +G ITS V+ +DA+G SK FG K YV +
Sbjct: 226 DLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGK 285
Query: 156 AQKKAERKAILRAQFERMRKERA-------ELY-KNINDEVDEIELKQYFSQCGTISSVK 207
AQKK+ER+ L+ +FE+ KE LY KN++D + + +LK+ FS+ GTI+S K
Sbjct: 286 AQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYK 345
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
IMR G+S+G T E + L M K
Sbjct: 346 IMRDPNGVSRGSGFVAFSTPEEASRALGEMNGK 378
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 102/197 (51%), Gaps = 38/197 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + L F +G I S+ ++ +G+SK +GFV + E A A+E L
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN--------------NLYVKNLDDDMTEEIL 120
G V+ E YVG ++++R QE F NLY+KNLDD +T+E L
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
E FSEFG ITS I +D NG S+G G SK LYVA AQ
Sbjct: 332 KEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQ 391
Query: 158 KKAERKAILRAQFERMR 174
+K +R+A L+AQF +MR
Sbjct: 392 RKEDRRARLQAQFSQMR 408
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ +L+ +F++ G + S +V +S GYG+V ++ P+ A A++ L
Sbjct: 35 YVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLN 94
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + V R + G++ N+++KNLD + + L + FS FG+I S I+
Sbjct: 95 FTPMNNKSIRVMYSHRDPSSRKSGTA--NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIA 152
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-RAQFER 172
D +G SKG+G K ++V +K +R +L + +F
Sbjct: 153 TDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNN 212
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+++ E +LK F GTI+S +MR G SK
Sbjct: 213 V------YVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSK 251
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 164/292 (56%), Gaps = 38/292 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL +IDN L+ FS FG+I S KV G+SKGYGFV
Sbjct: 113 MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ E+A +AI KL G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 173 QFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+V+ ++ +G S+ FG K YV R
Sbjct: 233 NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCR 292
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIE-LKQYFSQCGTISSVK 207
AQKK+ER+ L+ +FE+ KE A+ LY KN++D +D+ E LK+ F+ GTI+S K
Sbjct: 293 AQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCK 352
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
+MR G+SKG ++ + + R + A G + S P++ L QR
Sbjct: 353 VMRDLNGVSKGSGFVAFKSAEDAS---RALVAMNGKMIGSK--PLYVALAQR 399
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V + S GY +V +S+P A A+E L
Sbjct: 42 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLN 101
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + R + G++ N+++KNLD + + L + FS FG I S ++
Sbjct: 102 FTPINGKPIRIMYSNRDPSSRKSGAA--NIFIKNLDKSIDNKALYDTFSVFGNILSCKVA 159
Query: 137 KDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL------- 180
+ +G SKG+G + A + A K + F R ++ER +
Sbjct: 160 TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVR-KQERENVSGNPKFN 218
Query: 181 ---YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAI 223
KN+++ E LK+ F + G I+SV +MR G K C
Sbjct: 219 NVYVKNLSESTTEDNLKEIFGKFGPITSVVVMR--EGDGKSRCFGF 262
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 145/252 (57%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVGP I R +R I E + F NLYVKN+D ++T
Sbjct: 176 HYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVT 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E F ++G++ S ++ +D G + GFG + LYV
Sbjct: 236 DEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKKAER+A LR Q+++ R+ER Y KN+ D+VD+ +L+ F GTI+S
Sbjct: 296 ARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSC 355
Query: 207 KIMRTDRGISKG 218
++MR +RG SKG
Sbjct: 356 RVMRDERGKSKG 367
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 31/252 (12%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
S P A + + +V L T+ L +IF+ G + S +V +S GY +V
Sbjct: 30 SAPTHGANTATSASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 89
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y A+E+L ++++ + + D + N+++KNLD+ + + L
Sbjct: 90 YLNAADGERALEQLNYSSIKNRPCRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALH 147
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+ F+ FG + S ++ D +G SKG+G K +YV
Sbjct: 148 DTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHIS 207
Query: 159 KAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ ER+ ++ + MR LY KNI+ EV + E + F Q G + S + R D+G +
Sbjct: 208 RKERQ----SKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNL 263
Query: 218 GHCMAIAQTKRE 229
G +T E
Sbjct: 264 GFGFVNFETHEE 275
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 228/497 (45%), Gaps = 129/497 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D G SKGFG K+L+V
Sbjct: 204 DERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPV------HPTLY--QRALQVYQAPDFRHGGM 274
++ G+ A+TI P PT Y + Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPNQMTQMRPNPRWQQGGR 442
Query: 275 ------IPNGFSPPPPSP-LFLMAPDSVTQYRG----AMMNGHANFPMPLML-------- 315
+PN P P L ++P + RG A G L
Sbjct: 443 PQGFQGMPNAMRQSGPRPALRHLSPANAPASRGLPAAAQRVGVGTAAQNLAPRPPVAAPA 502
Query: 316 ----------SNLQKPSYNYPISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPD 364
S+++ P +P QP +A Q A L G A SML A P
Sbjct: 503 PRAVPPYKYASSVRSP---HPGVQPLQAPQPAV--LVQGQEPLTA------SMLAAAPPQ 551
Query: 365 ERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 552 EQKQMLGERLFPLIQAM 568
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 178/362 (49%), Gaps = 79/362 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN ++
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R E LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y + G+ Q+ Q++Q P+ G +P PS F P TQ
Sbjct: 376 YMRHMTGMR----------MQQLGQLFQ-PNTASGFFVPT----MAPSQRFF-GPQMTTQ 419
Query: 298 YR 299
R
Sbjct: 420 MR 421
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 53/241 (21%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L + FS G + S +V VV++ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLIRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
FG I S ++ D G SKG+G K +YV
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG-------- 163
Query: 163 KAILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
K I R + E+ E+A+L+ KN +E D+ +LK++F G I+S K+M + G SK
Sbjct: 164 KFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSK 223
Query: 218 G 218
G
Sbjct: 224 G 224
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 160/308 (51%), Gaps = 63/308 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R E LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGL 245
Y + G+
Sbjct: 376 YMRHMTGM 383
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 53/241 (21%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L + FS G + S +V VV++ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLIRDKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
FG I S ++ D GTSKG+G K +YV
Sbjct: 112 AFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG-------- 163
Query: 163 KAILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
K I R + E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SK
Sbjct: 164 KFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSK 223
Query: 218 G 218
G
Sbjct: 224 G 224
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLY 375
SN++ P P+ Q + Q + L N ++S+L P E+K ILG+RLY
Sbjct: 538 SNMRNP----PVQQMQQAQPLPSQLQGKNQEKL-----IASLLANAKPQEQKQILGERLY 588
Query: 376 PLVKKL 381
P+++++
Sbjct: 589 PMIERM 594
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/497 (30%), Positives = 225/497 (45%), Gaps = 128/497 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQIRPNPRWQQGGR 442
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------------ 322
P GF PS + P ++ N A+ +P + P+
Sbjct: 443 -PQGFQ-GMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVA 500
Query: 323 ---------YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPD 364
Y Y P QP +A Q A + G A SML A P
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQ 552
Query: 365 ERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 553 EQKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 172/337 (51%), Gaps = 80/337 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL +IDN L++ FS FG I S KV + G+SKGYGFV
Sbjct: 131 MLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGYGFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ E+A AI+KL G + +++VG F+RR DR + S F N+YVKNL ++T
Sbjct: 191 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEIT 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L + F ++G I+S V+ KD +G S+ F G VLYV
Sbjct: 251 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYV 310
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R E LY KN++D V++ +LK+ FS+ G ++S
Sbjct: 311 GRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 370
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A AQ K ER ++L+ ++
Sbjct: 371 KVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRKEERRAHLQTLF 430
Query: 239 AK-QGPGLASTI-----------------FPVHPTLY 257
+ PG S I P HPT+Y
Sbjct: 431 THIRSPGTMSPIPSPMPGFHHHPPGGPMSGPHHPTMY 467
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L ++D +L +F++ +Q+ +V +S GY +V ++ PE A A++ L
Sbjct: 61 YVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSLNY 120
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A + + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 121 APIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAM 178
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAI------------------LRAQFERMRKERAE 179
DA G SKG+G +V +++ + AI +R Q +R R E
Sbjct: 179 DAVGRSKGYG----FVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQ-DRSRSESGA 233
Query: 180 L-------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+ E+ + ELK+ F + G ISS +M+ G S+
Sbjct: 234 VPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 278
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +LD + E L++ F++ + ++ + +D S G+ YV A + +
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYA----YVNFANPEDASR 113
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ + +R + KN++ +D L + FS GTI S
Sbjct: 114 AMDSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILS 173
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K+ G SKG+ Q ++E T+ I
Sbjct: 174 CKVAMDAVGRSKGY--GFVQFEKEETAQAAI 202
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/441 (32%), Positives = 207/441 (46%), Gaps = 65/441 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL ID+ LH FS FG+I S KV + G+SKG+GFV
Sbjct: 112 MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A AI+ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 172 QYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE 231
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
LV+ F +G ITS VI +G S+ FG K YV R
Sbjct: 232 DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGR 291
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L + FS G I+S KI
Sbjct: 292 AQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKI 351
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--------- 259
MR G+SKG T+ E + L M K G P++ QR
Sbjct: 352 MRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGK-----PLYVAFAQRKEDRKAMLQ 406
Query: 260 ---ALQVYQAPDFRHGGM-IPNGFSP------PPPSPLFLMAPDSVTQYRGAMMNGHANF 309
Q P R GG +PN F P P P + Q + +
Sbjct: 407 PGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQM 466
Query: 310 PMPLMLSNLQKPSYNYPISQPRAGQAA----ANNLTNGNHRAA----ASNENLSSMLVAT 361
+P P++N P P G A + ++ R A A L+S L
Sbjct: 467 -LPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPAPIGTLTSALANA 525
Query: 362 SPDERKDILGQRLYPLVKKLK 382
+P++++ ILG+ LYPLV+ L+
Sbjct: 526 NPEQQRTILGESLYPLVELLE 546
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ + +L++ F G + S +V + G+S G +V ++ P A A+E L
Sbjct: 42 YVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALELLN 100
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 101 FAPLNGKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILRAQFER 172
D G SKGFG K +YV +K ER+ ++ + +F
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ KN+++ + +L + F G I+S IM
Sbjct: 219 V------FVKNLSESTTKEDLVKIFGAYGNITSAVIM 249
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 151/274 (55%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG + S KV + G+SKGYGFV
Sbjct: 123 MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I R +R ++E + F NLYVKNLD ++T
Sbjct: 183 HYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVT 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ +E F ++G +TS VIS D G SKGFG K L+V
Sbjct: 243 QDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKKAER+ LR +E+ + E+ Y KN+ D+VD+ +L+ F GTI+S
Sbjct: 303 SRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSC 362
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 363 KVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNK 396
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 220/478 (46%), Gaps = 106/478 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS++GK S+ + D +G SKGFG K+++V
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+TI P P R Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPP-------PSP-LFLMAPDSV-TQYRGAMMNGHANFPMPLMLSNLQKPSYNY 325
P GF P P P L + P V T + P P + P Y Y
Sbjct: 443 -PQGFQGVPNTIRQSGPRPALRHLTPARVPTAVQNLSPRPSVATPAPRAV-----PPYKY 496
Query: 326 PISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+ R+ A L + +SML A P E+K +LG+RL+PL++ +
Sbjct: 497 -AANVRSPHPAIQPLQTPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTM 553
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 155/291 (53%), Gaps = 37/291 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL ID+ LH FS FG I S K+ G SKGYGFV
Sbjct: 109 MYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ E+A +AI+KL G + ++YVG F+R+ DR + FNN+YVKNL + T+E
Sbjct: 169 QFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDE 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L+ F E+G ITS +I +DA+G S+ FG K YV +
Sbjct: 229 ELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGK 288
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ KE A+ Y KN++D + + +LK+ F+ GTI+S K+
Sbjct: 289 AQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKV 348
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
MR GIS+G T E T L M K G P++ L QR
Sbjct: 349 MRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGK-----PLYVALAQR 394
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L +++ +L+ +F++ G + S +V +S GYG+V +S P+ A A++
Sbjct: 38 YVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLN 97
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L ++ M + P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 98 FTPLNNRSIRIMYSHRDPSLRK-------SGTANIFIKNLDKAIDHKALHDTFSSFGLIL 150
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S I+ DA+G SKG+G K +YV +K +R+ A+ +
Sbjct: 151 SCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSK 210
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+++ + EL F + GTI+S IMR G S+
Sbjct: 211 TKFNNV------YVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSR 254
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD ++ + L + F++ G++ S+ + +D T + G + + Q A
Sbjct: 36 SLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLT-TRRSLGYGYVNFSNPQDAARALD 94
Query: 165 IL----------RAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+L R + +RK A ++ KN++ +D L FS G I S KI
Sbjct: 95 VLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKI 154
Query: 209 MRTDRGISKGH 219
G+SKG+
Sbjct: 155 ATDASGLSKGY 165
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/497 (30%), Positives = 225/497 (45%), Gaps = 128/497 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------------ 322
P GF PS + P ++ N A+ +P + P+
Sbjct: 443 -PQGFQ-GMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQSLAPRAAVA 500
Query: 323 ---------YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPD 364
Y Y P QP +A Q A + G A SML A P
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAMQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQ 552
Query: 365 ERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 553 EQKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 149/276 (53%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 93 MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFV 152
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G +E ++YVG F RA R++E F N+++KN D++
Sbjct: 153 HFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELD 212
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + F++FGKITS + DA+G SKGFG + L
Sbjct: 213 KEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKL 272
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER A L+ ++E+ + ER + Y KN++D VD+ L+Q F G I+
Sbjct: 273 YVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKIT 332
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M D G SKG + E T + M K
Sbjct: 333 SAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 368
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 101/196 (51%), Gaps = 43/196 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN A +D KL ++F+KFG I S V+ +GKSKG+GFV + PE A A+ ++
Sbjct: 201 NVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEM 260
Query: 76 ---QGATVERMELYV----------GPFIRR-----ADRIQEGSSFNNLYVKNLDDDMTE 117
Q ER +LYV RR +R+Q N LYVKNLDD + +
Sbjct: 261 HEYQLPDSER-KLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN-LYVKNLDDTVDD 318
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E+L + F +GKITS + D NG SKGFG +K LYVA
Sbjct: 319 EVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 378
Query: 155 RAQKKAERKAILRAQF 170
AQ+K +RKA L +Q+
Sbjct: 379 LAQRKEDRKAQLASQY 394
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L + FS G + S +V +S GY +V + P E AL
Sbjct: 18 MASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERAL 77
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + + G + M P +RR S N+++KNLD + + + + FS F
Sbjct: 78 DTMNFDVMYGKPIRIMWSQRDPSMRR-------SGAGNIFIKNLDKSIDNKAIYDTFSMF 130
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S ++ D SKG+G K +YV + Q +A R
Sbjct: 131 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAAR-- 188
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+R E R+ KN DE+D+ +L++ F++ G I+S +M G SKG
Sbjct: 189 -MREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKG 241
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL T+D+ L Q F +G I S+KV+ G+SKG+GFV + P+ A
Sbjct: 301 RYQGV-NLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEAT 359
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G + LYV R+ DR
Sbjct: 360 KAVTEMNGKMMCTKPLYVALAQRKEDR 386
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 155/273 (56%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L F+ FG + S K+ + G+SKGYGFV
Sbjct: 87 MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A +AI++L G + ++YVG F+R +R + S F N+YVKNL + T++
Sbjct: 147 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L F ++G ITS V+ +DA+G SK FG KV YV
Sbjct: 207 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVG 266
Query: 155 RAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVK 207
+AQ+K+ER+A LRA+FE+ RK + E LY KN++D V++ +LK+ FS+ GTI+S K
Sbjct: 267 KAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCK 326
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+M +G+SKG T E T L +M K
Sbjct: 327 VMLDPQGLSKGSGFVAFLTPEEATRALNVMNGK 359
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 102/197 (51%), Gaps = 38/197 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA A+E L
Sbjct: 193 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 252
Query: 76 QGATVERMEL-YVGPFIRRADRIQE---------GSSF-----NNLYVKNLDDDMTEEIL 120
GAT ++ YVG R+++R E + F NLY+KNLDD + +E L
Sbjct: 253 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKL 312
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
E FSEFG ITS + D G SKG G K LYVA AQ
Sbjct: 313 KELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 372
Query: 158 KKAERKAILRAQFERMR 174
+K ERKA L+AQF ++R
Sbjct: 373 RKEERKARLQAQFAQIR 389
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 41/236 (17%)
Query: 12 SGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESA 68
+G NA +V +L + I +L+ +F + + S +V Q + S GY +V +++P+ A
Sbjct: 8 AGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDA 67
Query: 69 LDAIEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
+A+E L G + M + P IR+ S F N+++KNLD + + L++
Sbjct: 68 TNALEHLNFTPLNGKPIRIMFSHRDPSIRK-------SGFANVFIKNLDPSIDNKALLDT 120
Query: 124 FSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRA--------------- 168
F+ FG + S I+ D NG SKG+G +V Q++A + AI R
Sbjct: 121 FAAFGTVLSCKIALDNNGQSKGYG----FVQFEQEEAAQNAIKRLNGMLINDKQVYVGLF 176
Query: 169 --QFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
ER R + + KN+++ + +LK F + G+I+S +MR G+SK
Sbjct: 177 VRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSK 232
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 153/272 (56%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL ID+ LH FS FG+I S KV G SKG+GFV
Sbjct: 243 MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFV 302
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ + E+A AI+KL G + +++VGPF+R+ +R FNN++VKN+ + MTEE
Sbjct: 303 QFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEE 362
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F EFG ITS+V+ +D +G SK FG K YV +
Sbjct: 363 DLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGK 422
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+++FE+ KE A LY KN++D + + +LK+ F+Q GTI+S K+
Sbjct: 423 AQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKV 482
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G + E + L M +K
Sbjct: 483 MRDPNGLSRGSGFVAFSSPEEASRALAEMNSK 514
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN++ + L +IF +FG I S V+ +GKSK +GFV + + A ++E L
Sbjct: 349 NVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEAL 408
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R I+ S F NLY+KNLDD + ++ L
Sbjct: 409 NGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLK 468
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E F++FG ITS + +D NG S+G G SK LYVA AQ+
Sbjct: 469 ELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQR 528
Query: 159 KAERKAILRAQFERMR 174
K +R+A L+AQF +MR
Sbjct: 529 KEDRRARLQAQFSQMR 544
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + + +LH +FS+ + S +V S +S GYG+V Y+ E A A++
Sbjct: 172 YVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLN 231
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 232 FTPLNGKPIRIMYSHRDPSIRK-------SGTGNIFIKNLDKGIDHKALHDTFSAFGNIL 284
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL-- 180
S ++ DA+G SKG G A +KA K + F R ++ + +
Sbjct: 285 SCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINK 344
Query: 181 -------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KNI++ + E +L + F + G I+SV +MR G SK
Sbjct: 345 EKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSK 388
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 221/488 (45%), Gaps = 110/488 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D +G SKGFG K+++V
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPV------HPTLY--QRALQVYQAPDFRHGGM 274
++ G+ A+TI P PT Y + Q+ P ++ G
Sbjct: 383 MQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQQAGR 442
Query: 275 I------PNGFSPPPPSP-LFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK------- 320
+ PN P P L + P Q + +P NL
Sbjct: 443 LQGFQGMPNAMRQSGPRPALRHLTPAGNAQASRGLPAAPQRVGVPPAAQNLAPRAPVAAA 502
Query: 321 -----PSYNYPISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQR 373
P Y Y S R+ A L + +SML A P E+K +LG+R
Sbjct: 503 TPRAVPPYKY-ASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGER 561
Query: 374 LYPLVKKL 381
L+PL++ +
Sbjct: 562 LFPLIQAM 569
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/497 (30%), Positives = 225/497 (45%), Gaps = 128/497 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------------ 322
P GF PS + P ++ N A+ +P + P+
Sbjct: 443 -PQGFQ-GMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQTLAPRAAVA 500
Query: 323 ---------YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPD 364
Y Y P QP +A Q A + G A SML A P
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQ 552
Query: 365 ERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 553 EQKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 229/496 (46%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 494 APRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 229/498 (45%), Gaps = 128/498 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ--PRAGQ-----AAANNL 340
Q +G G P + S + P+ N P S+ P Q A NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNL 493
Query: 341 --------------TNGNHRAAAS----------------------NENLS-SMLVATSP 363
++ A+S E L+ SML A P
Sbjct: 494 APRAAVAAATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPP 553
Query: 364 DERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 554 QEQKQMLGERLFPLIQTM 571
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 219/476 (46%), Gaps = 104/476 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL DM
Sbjct: 144 HFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + KD NG S+GFG + LYV
Sbjct: 204 EQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERRAILSNQY 382
Query: 239 AKQGPGLASTIFPV-----HPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPD 293
++ + + P+ PT Y L P R + P+P + P
Sbjct: 383 MQRLSTMRALGVPLLGSSQQPTSY--FLPAMPQPPARAAYYGSGSVATIQPAPRWAAQPP 440
Query: 294 SVTQYRGAMMNGHANFPMPL-MLSNLQKPSYNYPISQPR-----------AGQAAANNLT 341
+ +M+ A PL LS +++ S P P G A T
Sbjct: 441 RPSC--ASMVRPPATPRRPLAQLSTVRQASTQVPHPVPHTQRVANIGTQTTGPGGAEGCT 498
Query: 342 NGN------HRAAASNEN-------------LSSMLVATSPDERKDILGQRLYPLV 378
+G H +AA N + +SML A P E+K ++G+RLYPL+
Sbjct: 499 SGQLLLPYRHSSAAHNVHRVLESPMHRQEPLTASMLAAALPHEQKQMIGERLYPLI 554
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 42/235 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + + L++ F G I S +V +S Y ++ + P E AL
Sbjct: 10 LASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D +G S+GFG + ++V + + ER+A
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
LRA+ E +Y KN+ ++DE L+ FSQ G + SVK+M+ + G S+G
Sbjct: 182 ELRAR----AMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRG 232
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKF G I S+ + +D T + + Y+ Q
Sbjct: 7 GYPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDV-ATRRSL--RYAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K++ + G S+G
Sbjct: 124 NILSCKVVCDEHG-SRG 139
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 179/387 (46%), Gaps = 76/387 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FG I S K+ + G SKG+GFV
Sbjct: 134 MWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y ESA AIE + G + ME+YV P I R DR +QE +F N+YVKN +MT
Sbjct: 194 HYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMT 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF------------------------GSKVLY 152
E+ L E F +GK+TS + D G ++GF G ++LY
Sbjct: 254 EDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILY 313
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+++ R+ER Y KN++D +D+ +LK+ F+ G I+S
Sbjct: 314 VGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITS 373
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------ 259
K+M D G S+G E T + M+ + G P++ L QR
Sbjct: 374 AKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGK-----PLYVALAQRKEVRHN 428
Query: 260 --ALQVYQAPDFR------HGGM----IP------NGFSPPPPSPLFLMAPDSVTQYRGA 301
+ Q Q R GGM P GF PP P+ + RGA
Sbjct: 429 QLSQQFQQRNQMRLQQAAVQGGMGQFVAPMFYGQNAGFIPPMPAGV-----------RGA 477
Query: 302 MMNGHANFPMPLMLSNLQKPSYNYPIS 328
G+ P +M +P P+S
Sbjct: 478 PFAGNGA-PQMMMQQGASRPGQGVPVS 503
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
E+A A EK GA E E G + D +F +LYV +LD +TE L E FS
Sbjct: 26 EAASPASEKADGAKSEEAE--NGKDTK--DSKDNEQTFASLYVGDLDPSVTESDLYEIFS 81
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQK------------KAERKAILRAQFE-R 172
+ G+++S+ + +BA + V Y R + K ++ I+ +Q +
Sbjct: 82 KVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWSQRDPS 141
Query: 173 MRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
MRK+ KN++ ++D L FS G I S KI + G SKG
Sbjct: 142 MRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKG 189
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 155/273 (56%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L F+ FG + S K+ + G+SKGYGFV
Sbjct: 547 MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFV 606
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A +AI++L G + ++YVG F+R +R + S F N+YVKNL + T++
Sbjct: 607 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD 666
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L F ++G ITS V+ +DA+G SK FG KV YV
Sbjct: 667 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVG 726
Query: 155 RAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVK 207
+AQ+K+ER+A LRA+FE+ RK + E LY KN++D V++ +LK+ FS+ GTI+S K
Sbjct: 727 KAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCK 786
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+M +G+SKG T E T L +M K
Sbjct: 787 VMLDPQGLSKGSGFVAFLTPEEATRALNVMNGK 819
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA A+E L
Sbjct: 653 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 712
Query: 76 QGATVERMEL-YVGPFIRRADRIQE---------GSSF-----NNLYVKNLDDDMTEEIL 120
GAT ++ YVG R+++R E + F NLY+KNLDD + +E L
Sbjct: 713 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKL 772
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
E FSEFG ITS + D G SKG G K LYVA AQ
Sbjct: 773 KELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 832
Query: 158 KKAERKAILRAQFERMRKERA 178
+K ERKA L+AQF ++R A
Sbjct: 833 RKEERKARLQAQFAQIRSPGA 853
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 39/228 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEK-- 74
+V +L + I +L+ +F + + S +V Q + S GY +V +++P+ A +A+E
Sbjct: 476 YVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLN 535
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ S F N+++KNLD + + L++ F+ FG +
Sbjct: 536 FTPLNGKPIRIMFSHRDPSIRK-------SGFANVFIKNLDPSIDNKALLDTFAAFGTVL 588
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRA-----------------QFERMR 174
S I+ D NG SKG+G +V Q++A + AI R ER R
Sbjct: 589 SCKIALDNNGQSKGYG----FVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNR 644
Query: 175 KERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ + KN+++ + +LK F + G+I+S +MR G+SK
Sbjct: 645 GNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSK 692
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 152/492 (30%), Positives = 224/492 (45%), Gaps = 122/492 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D +G SKGFG K+++V
Sbjct: 204 DERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF----PV--------------HPTLY--QRALQVYQAPDFRHGGM 274
++ G+ A+T+ P PT Y Q+ P ++ G
Sbjct: 383 MQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPTYYAPNHMAQIRPGPRWQQTGR 442
Query: 275 IPNGFSPPPPS--------PLFLMAPDSVTQYRG-----------AMMNGHANFPMPLML 315
P GF P P + L M P + RG + P
Sbjct: 443 -PQGFQPMPNTLRHSGPRQSLRHMPPSNAQGTRGIPGVTQRVGVSSSTQTMGPRPPVSAP 501
Query: 316 SNLQKPSYNY-----PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDI 369
P Y Y P+ QP +A Q A + G A SML + P E+K +
Sbjct: 502 PPRAVPPYKYTRCPLPVVQPLQAPQPAVH--VQGQEPLTA------SMLASAPPQEQKQM 553
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 554 LGERLFPLIQAM 565
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 207/436 (47%), Gaps = 69/436 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SGIGN F+KNL T+D+ L+ FS FG+I S KVV + SKG+GFV
Sbjct: 82 MWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILSCKVVTDETNTSKGFGFV 141
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Y + ESA AI K+ G + +++VGPF +R + + N+++KNL +D++E+
Sbjct: 142 HYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQ 201
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + GKIT+L I D G SKGFG KV+YV RA
Sbjct: 202 LTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRA 261
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG- 214
QKK ER+A L+ +FE + + LY KN++D +D +L+ FS GTI+S K+MR D+G
Sbjct: 262 QKKLEREAELKHKFE-TKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGS 320
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGM 274
SKG T E + + M+ + + +RA Q F+ M
Sbjct: 321 SSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQLEAQHTKFKSSRM 380
Query: 275 IPNGFSPP------PPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSY----- 323
PP PP+ + ++ P + + A NG P+P Q+ Y
Sbjct: 381 PVQSIYPPTGPIFYPPAGMPVVYPQMIPRPPRAGWNG----PVP------QQGQYPPMQG 430
Query: 324 NYPISQPRAGQAAANNLTNG-----NHRAAASNENLSSMLVA---------------TSP 363
YPI PR G N N + + A+ + ++ L+A + P
Sbjct: 431 QYPIRNPRGGVPPTGNHRNQPRPRPDGQQPAAQQPIAQQLIAEPQAVQPEVTLATVQSMP 490
Query: 364 DERKD-ILGQRLYPLV 378
E+++ LG+ LYPL+
Sbjct: 491 REQQNSFLGELLYPLI 506
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 227/496 (45%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 91 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 150 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 209
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D G SKGFG K+++V
Sbjct: 210 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 269
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 270 GRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 329
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 330 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 388
Query: 239 AKQGPGL----ASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDS 294
++ G+ A+TI +Q A Y P P ++ P+ + M P+
Sbjct: 389 MQRIAGMRALPANTII----NQFQPAAGGYFMPAVPQAQSRPTYYA---PNQMAQMRPNP 441
Query: 295 VTQYRGAMMNGHANFPMPLMLSNLQKPSYNY-------------PISQPRAG-QAAANNL 340
Q +G G P L S +P+ + P+S RAG A NL
Sbjct: 442 RWQ-QGGRPQGFQGMPSALRQSG-PRPALRHLAPAGTAPVSRGLPVSAQRAGVTTAGQNL 499
Query: 341 ------------TNGNHRAAAS----------------------NENLS-SMLVATSPDE 365
++ A+S E L+ SML A P E
Sbjct: 500 APRPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTASMLAAAPPQE 559
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 560 QKQMLGERLFPLIQAM 575
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 150/252 (59%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S K+ + + G SKGY FV
Sbjct: 93 MWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGYAFV 152
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F+ R +R+++ + + NLYVKN DD++
Sbjct: 153 HFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDIS 212
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F + GKI S V+ +D +G S+GFG + +YV
Sbjct: 213 DDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYV 272
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER A+LR Q+E+ ++E + + KN++D +D+ +L+Q F+ GTI+S
Sbjct: 273 ARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSA 332
Query: 207 KIMRTDRGISKG 218
K+M ++GIS+G
Sbjct: 333 KVMSDEKGISRG 344
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 94/200 (47%), Gaps = 46/200 (23%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN I + + +F + G I S V+ GKS+G+GFV Y T E+A A+E L
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSF------------------NNLYVKNLDDDMTE 117
+ +YV RA + E S+ NLYVKNLDD + +
Sbjct: 261 NEKEFDLRRMYVA----RAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDD 316
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
L ++F+ FG ITS + D G S+GFG SK LYVA
Sbjct: 317 AKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVA 376
Query: 155 RAQKKAERKAILRAQF-ERM 173
AQ+K +RKA L AQ+ +RM
Sbjct: 377 LAQRKEDRKAQLAAQYVQRM 396
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ KL Q F+ FG I S+KV+ ++G S+G+GFV +S+PE A
Sbjct: 299 RFQGV-NLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEAT 357
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G + LYV R+ DR
Sbjct: 358 KAVTEMNGRIIISKPLYVALAQRKEDR 384
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L D+ E L EKF+ G I+S+ + +DA T + G YV Q +A+
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDA-ITRRSLG--YAYVNFQQPNDAERAL 77
Query: 166 LRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSVK 207
F+ + + + KN+ ++D + FS G I S K
Sbjct: 78 DTLNFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCK 137
Query: 208 IMRTDRGISKGHCMAIAQTK 227
I + G SKG+ +T+
Sbjct: 138 IALDENGNSKGYAFVHFETQ 157
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 152/497 (30%), Positives = 225/497 (45%), Gaps = 128/497 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------------ 322
P GF PS + P ++ N A+ +P + P+
Sbjct: 443 -PQGFQ-GMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVPNLAPRAAVA 500
Query: 323 ---------YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPD 364
Y Y P QP +A Q A + G A SML A P
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQ 552
Query: 365 ERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 553 EQKQMLGERLFPLIQTM 569
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 148/276 (53%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 92 MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G +E ++YVG F R R++E F N+Y+KN D++
Sbjct: 152 HFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELD 211
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + FS+FGKITS + DA+G SKGFG + L
Sbjct: 212 KEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKL 271
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER A L+ ++E+ + ER + Y KN++D V++ LKQ F G I+
Sbjct: 272 YVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKIT 331
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M D G SKG + E T + M K
Sbjct: 332 SAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 185/439 (42%), Gaps = 85/439 (19%)
Query: 9 ARLSGIG-------NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
ARL +G N ++KN A +D L ++FSKFG I S+ V+V +GKSKG+GFV
Sbjct: 186 ARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVA 245
Query: 62 YSTPESALDAIEKLQGATVERME--LYV----------GPFIRR-----ADRIQEGSSFN 104
+ PE A A+ ++ + E LYV RR +R+Q N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----------------- 147
LYVKNLDD + ++IL + F +GKITS + D NG SKGFG
Sbjct: 306 -LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEM 364
Query: 148 ------SKVLYVARAQKKAERKAILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQC 200
+K LYVA AQ+K +RKA L +Q+ +R+ R ++ V Y
Sbjct: 365 NGKMMCTKPLYVALAQRKEDRKAQLASQYMQRLASIRMHNAGSMPGTV-------YTPGT 417
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF---------- 250
G ++ R + AQ R T + A G G+ S
Sbjct: 418 GGFFVSSTLQNQRAFMPTATIPGAQM-RGTTPRWNTIGAAAGFGVQSPYMVQSGGYGQAG 476
Query: 251 --PVHPTLYQRALQVYQAPDFRHGGMIP--NGFSPPPPSPLFLMAPDSVTQYRGA---MM 303
PT A+ A + G P G + P L A ++ Q +G M
Sbjct: 477 RGGTRPTASSAAV----AMRAQQGQYGPGQTGVTRGGPQAQRLTAGSAMVQNQGTRSQQM 532
Query: 304 NGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATS- 362
G P + SY+ +P Q+ N++ E L++ ++A +
Sbjct: 533 GGRQTQPGKPNQGQMMYSSYSAITGRPGQVQSQQNSIV------IQGQEPLTAHMLAQAL 586
Query: 363 PDERKDILGQRLYPLVKKL 381
P E+K +LG+R+YPL++++
Sbjct: 587 PQEQKQMLGERIYPLIERI 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 39/266 (14%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L + FS G + S +V +S GY +V + P E AL
Sbjct: 17 MASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERAL 76
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + + G + M P +RR S N+++KNLD + + + + FS F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRR-------SGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S ++ D SKG+G K +YV + Q + R
Sbjct: 130 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR-- 187
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
LR E R+ KN DE+D+ L++ FS+ G I+S +M G SKG
Sbjct: 188 -LREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAF 246
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIF 250
+ + + M+ + PG ++
Sbjct: 247 ENPEDAEKAVTEMHEYELPGTERKLY 272
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 148/276 (53%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 92 MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G +E ++YVG F R R++E F N+Y+KN D++
Sbjct: 152 HFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELD 211
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + FS+FGKITS + DA+G SKGFG + L
Sbjct: 212 KEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKL 271
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER A L+ ++E+ + ER + Y KN++D V++ LKQ F G I+
Sbjct: 272 YVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKIT 331
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M D G SKG + E T + M K
Sbjct: 332 SAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN A +D L ++FSKFG I S+ V+V +GKSKG+GFV + PE A A+ ++
Sbjct: 200 NVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEM 259
Query: 76 QGATVERME--LYV----------GPFIRR-----ADRIQEGSSFNNLYVKNLDDDMTEE 118
+ E LYV RR +R+Q N LYVKNLDD + ++
Sbjct: 260 HEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN-LYVKNLDDTVNDD 318
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
IL + F +GKITS + D NG SKGFG +K LYVA
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 378
Query: 156 AQKKAERKAILRAQF 170
AQ+K +RKA L +Q+
Sbjct: 379 AQRKEDRKAQLASQY 393
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 109/262 (41%), Gaps = 39/262 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAI- 72
+V +L + L + FS G + S +V +S GY +V + P E ALD +
Sbjct: 21 YVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMN 80
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ + G + M P +RR S N+++KNLD + + + + FS FG I
Sbjct: 81 FDMMYGKPIRIMWSQRDPSMRR-------SGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D SKG+G K +YV + Q + R LR
Sbjct: 134 SCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR---LRE 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKR 228
E R+ KN DE+D+ L++ FS+ G I+S +M G SKG +
Sbjct: 191 MGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPE 250
Query: 229 ERTSYLRIMYAKQGPGLASTIF 250
+ + M+ + PG ++
Sbjct: 251 DAEKAVTEMHEYELPGTERKLY 272
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL T+++ L Q F +G I S+KV+ G+SKG+GFV + P+ A
Sbjct: 300 RYQGV-NLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEAT 358
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G + LYV R+ DR
Sbjct: 359 KAVTEMNGKMMCTKPLYVALAQRKEDR 385
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 217/494 (43%), Gaps = 123/494 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL IDN L+ FS FG I S K+ G+SKGYGFV
Sbjct: 106 MYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA +A +KL G + ++YVGPF+R+ +R + FNN+YVKNL + T+E
Sbjct: 166 QFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDE 225
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+G ITS V+ +D +G SK FG K YV +
Sbjct: 226 DLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGK 285
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK ER+ L+ +FE+ KE + LY KN++D + + +L++ FS+ GTI+S K+
Sbjct: 286 AQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKV 345
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRI---- 236
MR GIS+G +A+AQ K +R + L+
Sbjct: 346 MRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 405
Query: 237 ---------------MYAKQGPGLASTIF---------PVHPTL-YQRALQVYQAPDFRH 271
MY PGL +F P P YQ L P R
Sbjct: 406 MRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQPGFGYQHQL----VPGMRP 461
Query: 272 GGM-IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS-------Y 323
G +PN F P ++ P Q G +G L + Y
Sbjct: 462 GAAPMPNFFVP-------MVQPGQPNQRPGGRRSGTGPVQQTQQPLPLMQQQMLPRGRVY 514
Query: 324 NYPISQ----------PRAGQAAANNLTNGNHRAAASNENLSSMLVATS-----PDERKD 368
YP + P +A ++ R AA ++ + +AT+ PD+++
Sbjct: 515 RYPPGRNMADVPIPGVPGGMLSAPYDMAGMPFRDAAVSQPMPIGALATALANAPPDQQRT 574
Query: 369 ILGQRLYPLVKKLK 382
+LG+ LYPLV +L+
Sbjct: 575 LLGENLYPLVDQLE 588
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L S + + L+ +F + G + S +V +S GYG+V Y + A A++
Sbjct: 35 YVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDMLN 94
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IRR S N+++KNLD + + L + FS FG I
Sbjct: 95 FTPLNGKPIRIMYSFRDPSIRR-------SGTANIFIKNLDKAIDNKALYDTFSTFGAIL 147
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S I+ DA+G SKG+G K +YV +K ER+ A +
Sbjct: 148 SCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNK 207
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+ + + +LK F + G I+S +M+ G SK
Sbjct: 208 TKFNNV------YVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSK 251
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 68/346 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL IDN LH+ FS FG I S KV + + G+SKG+GFV
Sbjct: 114 MYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A +AI+ L G + ++VGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 174 QYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKE 233
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ F E+G ITS V+ +G S+ FG K YV R
Sbjct: 234 DLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGR 293
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE++ K+ A+ Y KN++D + + +L++ FS G I+S K+
Sbjct: 294 AQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKV 353
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
MR G+SKG +A AQ K +R + L+ +++
Sbjct: 354 MRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 413
Query: 241 QGPGLASTIFPVHPTLYQRALQVY--QAPDFRHGGMIPNGFSPPPP 284
P + P+ PTL R L +Y AP G P PP P
Sbjct: 414 MRPAV-----PMTPTLAPR-LPMYPPMAPQQLFYGQAPPAMIPPQP 453
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 35/218 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ + +L+++FS+ G + S +V V S+ +S GY +V ++ P A A+E
Sbjct: 43 YVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNFNNPLDAARALEV 100
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L A + + V R + GS+ N+++KNLD + + L E FS FG I S
Sbjct: 101 LNFAPLNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKMIDNKSLHETFSSFGTILSCK 158
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAI------------------LRAQ-----FE 171
++ D G SKGFG +V +++A + AI LR Q F+
Sbjct: 159 VAMDEGGQSKGFG----FVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFD 214
Query: 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + KN+++ + +L + F + G I+S +M
Sbjct: 215 KTKFNNV-FVKNLSESTTKEDLLKIFGEYGNITSAVVM 251
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA--------------NGTSKGFGSKV 150
+LYV +L+ +++ L E FS+ G++ S+ + +D N +V
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
L A K R R A ++ KN++ +D L + FS GTI S K+
Sbjct: 101 LNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVA 160
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 161 MDEGGQSKG 169
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 150/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TIDN LH FS FG I S KV + G+SKG+GFV
Sbjct: 196 MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFV 255
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY ESA A++ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 256 QYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE 315
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ FSE+G ITS V+ +G S+ FG K YV R
Sbjct: 316 DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGR 375
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L++ FS G I+S KI
Sbjct: 376 AQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKI 435
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+SKG T+ E + L M K
Sbjct: 436 MRDQNGVSKGSGFVSFSTREEASQALTEMNGK 467
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L ++FS++G I S+ V++ +GKS+ +GFV + +P+ A A+E+L
Sbjct: 302 NVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEEL 361
Query: 76 QGATVERMELYVGPFIRRADR--------------IQEGSSFNNLYVKNLDDDMTEEILV 121
G + E YVG ++++R + NLY+KNLDD +T++ L
Sbjct: 362 NGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLR 421
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FGKITS I +D NG SKG G K LYVA AQ+
Sbjct: 422 ELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 481
Query: 159 KAERKAILRAQFERMR 174
K ERKA+L+AQF +MR
Sbjct: 482 KEERKAMLQAQFSQMR 497
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + + +L+++FS+ G + S +V +S GY +V YS P A A+E L
Sbjct: 125 YVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEALN 184
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 185 FAPLNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 242
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAER-KAILRAQFER 172
D G SKGFG K +YV +K ER + +A+F
Sbjct: 243 MDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNN 302
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ KN+++ + +L + FS+ GTI+S +M
Sbjct: 303 V------FVKNLSESTTKEDLIKVFSEYGTITSAVVM 333
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG----SKVLYVARAQKK 159
+LYV +L+ ++T+ L E FS+ G++ S+ + +D N S G+ S + ARA +
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 160 AERKAILRAQFERMRKER---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+ M R A ++ KN++ +D L FS G I S K+
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 242
Query: 210 RTDRGISKG 218
D G SKG
Sbjct: 243 MDDIGQSKG 251
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN ++M
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 152/289 (52%), Gaps = 37/289 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG+GN F+KNL TID LH FS FG I S KV G SKGYGFV
Sbjct: 100 MWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFV 159
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ +A AI+ + +E +YVGPF +RADR Q+ + N++VKNL D+ ++ L
Sbjct: 160 HFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQD--VYTNVFVKNLPADIGDDEL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
+ +E G+ITS V+ KD G SKGFG K LY RAQ
Sbjct: 218 GKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQ 277
Query: 158 KKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK ER+A+LR + E ++ER Y KN++DEVD+ L++ F+ GTI+S K+M+
Sbjct: 278 KKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMK 337
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
G SKG + E T + M K G P++ L QR
Sbjct: 338 DGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGK-----PLYVALAQR 381
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 146/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F FG++ S KV ++G+SKGYGFV
Sbjct: 119 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVGP I R +R + + F NLY+KNLD ++T
Sbjct: 179 HYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVT 238
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F+ +G +TS ++ D G SKGFG K LYV
Sbjct: 239 QEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYV 298
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+ LR +E+ + E+ Y KN+ D+VD+ +L+ F GTI+S
Sbjct: 299 TRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSC 358
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M ++G SKG + E T + M K
Sbjct: 359 KVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNK 392
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL + + + ++F+++G + S+ V V EG+SKG+GFV Y + E A A++ L
Sbjct: 227 NLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNL 286
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
++ +LYV ++A+R +E S+ NLYVKNL+DD+ ++ L
Sbjct: 287 HDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLR 346
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + D G+SKGFG SK LYV+ AQ+
Sbjct: 347 AEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQR 406
Query: 159 KAERKAILRAQFERMRKER 177
+ R+ L +Q + + R
Sbjct: 407 REVRRQQLESQIAQRNQIR 425
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 207/453 (45%), Gaps = 90/453 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV ++G SK +GFV
Sbjct: 124 MWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG + + DR + ++F N+YVKN+D +
Sbjct: 184 HYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFS 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + + F +GKITSL + KDA G SKGFG + LYV
Sbjct: 244 EEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D ++L++ F GTI+S
Sbjct: 304 GRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSA 363
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
++M + G SKG + E T + M + G P++ L QR Q
Sbjct: 364 RVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGK-----PLYVALAQRKDVRRSQ 418
Query: 263 VYQAPDFRH---------GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP- 312
+ Q R+ G IP F P P+F G G A FP P
Sbjct: 419 LEQQIQARNQMRMQNAAATGGIPGQFIP----PMFYGQQPGFFPPNG---RGSAPFPGPN 471
Query: 313 --LMLSNLQKPSYNYPISQ-PRAGQ-----------------AAANN-------LTNGNH 345
+M+ Q P P Q PRAG AAAN N +
Sbjct: 472 PQMMVPRGQIPP---PQGQWPRAGPNGQPVPVYGIPPVYGDFAAANGGRQQRGYYPNRQN 528
Query: 346 RAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+ ++L+++L + D++K ILG+ LYP +
Sbjct: 529 QKGRPQKDLAALLASAPVDQQKRILGEELYPKI 561
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L +++ L +IFS G + S +V KS GY +V + E AIE+L
Sbjct: 53 YVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELN 112
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G M P +RR + N+++KNL + + L + FS FGKI
Sbjct: 113 YSLIDGRPCRIMWSQRDPSLRR-------NGEGNIFIKNLHPAIDNKALHDTFSAFGKIL 165
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + +YV + K +R+ +
Sbjct: 166 SCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRE----S 221
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ E E+++ F G I+S+ + + G SKG
Sbjct: 222 KFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKG 272
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYV 153
AD Q + +LYV L+ + E +L E FS G+++S+ + +DA T K G YV
Sbjct: 40 ADSSQLPDTSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAV-TKKSLG--YAYV 96
Query: 154 ARAQKKAERKAILRAQFE------------------RMRKERAELYKNINDEVDEIELKQ 195
+ + KAI + R E KN++ +D L
Sbjct: 97 NFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHD 156
Query: 196 YFSQCGTISSVKIMRTDRGISK 217
FS G I S K+ ++G SK
Sbjct: 157 TFSAFGKILSCKVATDEQGNSK 178
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 159/509 (31%), Positives = 227/509 (44%), Gaps = 139/509 (27%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTIF------------PVHPTLYQRA--------LQVYQAPDFRHGGM 274
++ G+ A+ I P P R Q+ P ++ GG
Sbjct: 383 MQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQIRPNPRWQQGGR 442
Query: 275 IPNGF---------SPPPPSPLFLMAPDSVTQYRGAMMNGHANFP------------MPL 313
P GF S P P+ L S R AM G A +P
Sbjct: 443 -PQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 501
Query: 314 MLSNL------------QKPSYNY--------PISQP-RAGQAAANNLTNGNHRAAASNE 352
+ NL Y Y P QP +A Q A + G A
Sbjct: 502 AVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA--- 556
Query: 353 NLSSMLVATSPDERKDILGQRLYPLVKKL 381
SML A P E+K +LG+RL+PL++ +
Sbjct: 557 ---SMLAAAPPQEQKQMLGERLFPLIQTM 582
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 154/293 (52%), Gaps = 39/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S K+ + G SKG+GFV
Sbjct: 121 MWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFV 180
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG----SSFNNLYVKNLDDDMT 116
Y ESA AIE + G + E+YVGP + + DR + ++F N+YVKN++ +
Sbjct: 181 HYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWD 240
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E FS FG I+S+ +SKD +G S+GFG + LYV
Sbjct: 241 EDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYV 300
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER L+ Q+E R+E+ Y KN++D +D+ +L++ F GTI+S
Sbjct: 301 GRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSA 360
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M D G SKG + E T + M+ + G P++ L QR
Sbjct: 361 KVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGK-----PLYVALAQR 408
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 40/208 (19%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
++ N +VKN+ D KL + FS FG I S + + GKS+G+GFV + E A+
Sbjct: 224 IANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVK 283
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQ---------EGSSFN-----NLYVKNLDDDMT 116
A+E+L ++ +LYVG ++++R++ N NL+VKNLDD +
Sbjct: 284 AVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSID 343
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E+F +G ITS + D G SKGFG K LYV
Sbjct: 344 DAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYV 403
Query: 154 ARAQKKAERKAILRAQFE---RMRKERA 178
A AQ+K R++ L Q + +MR ++A
Sbjct: 404 ALAQRKEVRRSQLSQQIQARNQMRMQQA 431
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGT 142
A+ Q + +LYV LD +TE L E FS G+++++ + +DA N
Sbjct: 37 AESTQNSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQ 96
Query: 143 SKGFGSKVL-YVARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFS 198
S G K L + K + I+ +Q + + KN++ +D L FS
Sbjct: 97 SHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFS 156
Query: 199 QCGTISSVKIMRTDRGISKG 218
G I S KI + G SKG
Sbjct: 157 AFGKILSCKIATDENGNSKG 176
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 153/274 (55%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL ID+ LH F+ FG++ S KV + G+S+G+GFV
Sbjct: 130 MWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFV 189
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR----IQEGSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG +I + +R ++ S F NLYVKNLD ++T
Sbjct: 190 HYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVT 249
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F++FG++TS V+ KD G SKGFG K L+V
Sbjct: 250 DDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFV 309
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+ LR +E+ + E+ A LY KN+ D++D+ +L+ F GTI+S
Sbjct: 310 TRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSC 369
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
KIMR ++G SKG + E T + M K
Sbjct: 370 KIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNK 403
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + + + + +F+KFG++ S+ V +EGKSKG+GFV + ESA A++ L
Sbjct: 238 NLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDAL 297
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ +L+V ++A+R +E S+ NLY+KNL+DDM ++ L
Sbjct: 298 HDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLR 357
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS I +D GTSKGFG SK LYV+ AQ+
Sbjct: 358 AEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQR 417
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 418 REVRRQQLESQI 429
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 31/242 (12%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
+S P + + + +V L ST+ L +IF+ G + S +V +S GY +V
Sbjct: 43 YSVPPASGASTPSASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYV 102
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y A+E+L + ++ + + D + N+++KNLD+ + + L
Sbjct: 103 NYLNAADGERALEQLNYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDHKAL 160
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
+ F+ FG + S ++ D NG S+GFG K ++V
Sbjct: 161 HDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYI 220
Query: 158 KKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGIS 216
K ER+A + Q + + LY KN++ EV + E F++ G ++S + + + G S
Sbjct: 221 SKKERQAHIDEQ----KSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKS 276
Query: 217 KG 218
KG
Sbjct: 277 KG 278
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 206/454 (45%), Gaps = 91/454 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV ++G SK +GFV
Sbjct: 124 MWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG + + DR + ++F N+YVKN+D +
Sbjct: 184 HYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFS 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +GKITSL + KDA G SKGFG + LYV
Sbjct: 244 EEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D ++L++ F GTI+S
Sbjct: 304 GRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSA 363
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
++M + G SKG + E T + M + G P++ L QR Q
Sbjct: 364 RVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGK-----PLYVALAQRKDVRRSQ 418
Query: 263 VYQAPDFRH---------GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP- 312
+ Q R+ G IP F P P+F G G A FP P
Sbjct: 419 LEQQIQARNQMRMQNAAATGGIPGQFIP----PMFYGQQPGFFPPNG---RGSAPFPGPN 471
Query: 313 --LMLSNLQKPSYNYPISQ-PRAGQ-----------------AAANN--------LTNGN 344
+M+ Q P P Q PRAG AAAN G
Sbjct: 472 PQMMVPRGQIPP---PQGQWPRAGPNGQPVPVYGIPPVYGDFAAANGGRQQRGYYPNRGQ 528
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
++ ++L+++L + D++K ILG+ LYP +
Sbjct: 529 NQKGRPQKDLAALLASAPVDQQKRILGEELYPKI 562
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN ++M
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 181/364 (49%), Gaps = 79/364 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN ++
Sbjct: 136 HFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L + F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R E LY KN++D +D+ L++ FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y + G+ Q+ Q++Q P+ G +P + P F +P TQ
Sbjct: 376 YMRHMTGMR----------MQQLGQIFQ-PNTTGGFYVP---TMAPGQRFF--SPQIATQ 419
Query: 298 YRGA 301
R A
Sbjct: 420 MRNA 423
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L + FS G + S +V VV++ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + ++ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLIRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRQIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQF 170
FG I S ++ D G SKG+G A + K I R +
Sbjct: 112 AFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+ E+A+L+ KN +E D+ +LK +F G I+S K+M + G SKG
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKG 224
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 231/494 (46%), Gaps = 123/494 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN L+ FS FG+I S K+ + Q G S GYGFV
Sbjct: 86 MWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A ++IEK+ G + +++VG F+ R +R++ + F N+YVKNL++ M
Sbjct: 145 HFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E F FGKI S + G +GFG K +YV
Sbjct: 205 DKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYV 264
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ +FERM+ ER Y KN+++++D+ L++ FSQ GTI+S
Sbjct: 265 GRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSA 324
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
++M T+ G +KG C +A+AQ K +R ++L Y
Sbjct: 325 RVM-TEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQY 383
Query: 239 AK-------QGPGLASTIFP-----VHPTLYQ----------------RALQVYQAPDFR 270
+ QG G+ P PT+ Q R+ +QAP+ R
Sbjct: 384 MQRIAGMRMQGQGVNQIFGPGGTGYFVPTMAQTQRGGFYAPTQIAPQVRSTPRWQAPNPR 443
Query: 271 HGGMIPNGFSPPPPS-PLFLMAPDS------------VTQYR--GAMMNGHANFPMPLML 315
G++ P S P+ P++ ++R GA +N A P +
Sbjct: 444 AQTA---GYAQLPGSGPMRNPRPNTQQVRAGANSRPITGEFRMPGAQVNRPAQ-PGAMQA 499
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENL--------SSMLVATSPDERK 367
Q+ + Y +A + A + G + A + +SML A +P E+K
Sbjct: 500 GGQQRAPFKY----TQAVRNATGQVPGGAAQPQAQTAVVIQGQEPLTASMLAAAAPQEQK 555
Query: 368 DILGQRLYPLVKKL 381
+LG+RL+PL++ +
Sbjct: 556 QMLGERLFPLIQSM 569
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 162/292 (55%), Gaps = 38/292 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL +IDN L FS FG I S KV G+SKGYGFV
Sbjct: 116 MYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY ESA +AI +L G + ++YVGPF+R+ +R + FNN+YVKNL + TE+
Sbjct: 176 QYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED 235
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F +FG ITS+++ + +G S+ FG K LYV R
Sbjct: 236 NLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVGR 295
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIE-LKQYFSQCGTISSVK 207
AQKK+ER+ L+ +FE+ KE A+ LY KN++ VD+ E LK+ F++ GTI+S K
Sbjct: 296 AQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCK 355
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
+MR G++KG ++ + + R + A G + S P++ L QR
Sbjct: 356 VMRDSNGVNKGSGFVAFKSSEDAS---RALVAMNGKMVGSK--PLYVALAQR 402
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V + S GY +V +S+P A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEMLN 104
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + + R + G++ N+++KNLD + + L + FS FG I S ++
Sbjct: 105 FTPVNGKPIRIMYSNRDPSSRKSGAA--NIFIKNLDKSIDNKALFDTFSAFGTILSCKVA 162
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERAELY-- 181
+ +G SKG+G +V Q ++ + AI F R ++ER ++
Sbjct: 163 TEISGESKGYG----FVQYEQDESAQNAINELNGMLLNDKKVYVGPFVR-KQERENVFGS 217
Query: 182 --------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ E LK+ F + G I+SV ++R D G S+
Sbjct: 218 PKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSR 261
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 151/477 (31%), Positives = 223/477 (46%), Gaps = 104/477 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SGIGN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKN + DM
Sbjct: 144 HFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E L E FS+FGK S+ + D NG S+GF G +VLYV
Sbjct: 204 DECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK++ER++ L+ +FE+M++ER Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTSQY 382
Query: 239 AKQGP---GLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSP--------- 286
++ GL +FP PT Y L P R P+ +P P+P
Sbjct: 383 MQRLSTLRGLNGPLFP-QPTNY--FLPAIPQPPARATFYSPSTVAPVRPAPRWTSYSPRS 439
Query: 287 --------LFLMAP-------DSVTQYRGAMMNGHANFPMPLMLSNL--QKPSYNYPISQ 329
+ L+ P +++ R A P ++N+ Q P S
Sbjct: 440 SCESPTXLIVLLLPATPRRTVSNISTVRQASTQVPRAGPHMQRVANIGTQTMGTGCPGSP 499
Query: 330 PRA-GQAAANNLTNGNHRAAA------SNENLSSMLVATSP-DERKDILGQRLYPLV 378
RA Q ++ H+ E L++ ++A++P E+K +LG RLYPL+
Sbjct: 500 GRAVAQYKYSSAVRNTHQVMEPAVHIQGQEPLTASMLASAPVQEQKQMLGDRLYPLI 556
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + KN++D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDENG 136
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 220/474 (46%), Gaps = 94/474 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQ-------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSP 281
Y ++ PG A F P P + Q+ Q PN P
Sbjct: 384 YMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRP 443
Query: 282 PPPSPL---------FLMAPDSVTQYRGAMMNGHANFPMPLM-LSNLQKPS-YNYPISQP 330
+ F AP + T GAM + + P+ + +S +PS Y Y +
Sbjct: 444 NAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITAVGVSAQSRPSNYKYTSNMR 503
Query: 331 RAGQAAANNLTNGNHRAA--ASNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
QA A +A E L+ SML A P E+K +LG+RL+PL++ +
Sbjct: 504 NPPQAMAIPTPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCM 557
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 226/499 (45%), Gaps = 132/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D G SKGFG K+++V
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPV------HPTLY--QRALQVYQAPDFRHGGM 274
++ G+ A+TI P PT Y + Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPNQMTQMRPNPRWQQGGR 442
Query: 275 IPNGF---------SPPPPSPLFLMAPDSVTQYRG----AMMNGHANFPMPL-------- 313
P GF S P P+ L S RG A G L
Sbjct: 443 -PQGFQGMPNAMRQSGPRPALRHLAPAGSAPASRGLPAAAQRVGVGTAAQNLGPRPPVAA 501
Query: 314 ----------MLSNLQKPSYNYPISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATS 362
S+++ P +P QP +A Q A + G A SML A
Sbjct: 502 PAPRAVPPYKYASSVRSP---HPAVQPLQAPQPAVH--VQGQEPLTA------SMLAAAP 550
Query: 363 PDERKDILGQRLYPLVKKL 381
P E+K +LG+RL+PL++ +
Sbjct: 551 PQEQKQMLGERLFPLIQAM 569
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 150/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TIDN LH FS FG I S KV + G+SKG+GFV
Sbjct: 196 MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFV 255
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY ESA A++ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 256 QYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE 315
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ FSE+G ITS V+ +G S+ FG K YV R
Sbjct: 316 DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGR 375
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L++ FS G I+S KI
Sbjct: 376 AQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKI 435
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+SKG T+ E + L M K
Sbjct: 436 MRDQNGVSKGSGFVSFSTREEASQALTEMNGK 467
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L ++FS++G I S+ V++ +GKS+ +GFV + +P+ A A+E+L
Sbjct: 302 NVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEEL 361
Query: 76 QGATVERMELYVGPFIRRADR--------------IQEGSSFNNLYVKNLDDDMTEEILV 121
G + E YVG ++++R + NLY+KNLDD +T++ L
Sbjct: 362 NGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLR 421
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FGKITS I +D NG SKG G K LYVA AQ+
Sbjct: 422 ELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 481
Query: 159 KAERKAILRAQFERMR 174
K ERKA+L+AQF +MR
Sbjct: 482 KEERKAMLQAQFSQMR 497
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + + +L+++FS+ G + S +V +S GY +V YS P A A+E L
Sbjct: 125 YVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEALN 184
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 185 FAPLNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 242
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAER-KAILRAQFER 172
D G SKGFG K +YV +K ER + +A+F
Sbjct: 243 MDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNN 302
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ KN+++ + +L + FS+ GTI+S +M
Sbjct: 303 V------FVKNLSESTTKEDLIKVFSEYGTITSAVVM 333
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG----SKVLYVARAQKK 159
+LYV +L+ ++T+ L E FS+ G++ S+ + +D N S G+ S + ARA +
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 160 AERKAILRAQFERMRKER---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+ M R A ++ KN++ +D L FS G I S K+
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 242
Query: 210 RTDRGISKG 218
D G SKG
Sbjct: 243 MDDIGQSKG 251
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 222/488 (45%), Gaps = 126/488 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 102 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 161 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 220
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 221 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 281 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSA 340
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 341 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 399
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P L +Q A Y P +P PP P+ L M P+
Sbjct: 400 MQRVAGMRA--LPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 451
Query: 294 SVTQYRGAMMNGHANFP-------------------MPLMLSNL------------QKPS 322
Q +G G P +P + NL
Sbjct: 452 PRWQ-QGGRPQGFQGMPSALRQSGPRPALRHLAPTGVPTAVPNLAPRAAVAAAAPRAVAP 510
Query: 323 YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
Y Y P QP +A Q A + G A SML A P E+K +LG+R
Sbjct: 511 YKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQEQKQMLGER 562
Query: 374 LYPLVKKL 381
L+PL++ +
Sbjct: 563 LFPLIQTM 570
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 19 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 78
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 79 PADAERALDTMNFDVMKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 131
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 132 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 190
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G
Sbjct: 191 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGK 246
Query: 216 SKG 218
SKG
Sbjct: 247 SKG 249
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 160/302 (52%), Gaps = 67/302 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G+SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA +IEK+ G + ++YVG FI R +R +E F N+YVKN +D+T
Sbjct: 136 HFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLT 195
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
EE L + F +FG ITS V++KD G S+GFG KVL
Sbjct: 196 EEALRDMFEKFGPITSHRVMTKD--GKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVL 253
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 254 YVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTIT 313
Query: 205 SVKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRI 236
S K+M D G SKG C +A+AQ K ER S+L
Sbjct: 314 SAKVM-LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLAS 372
Query: 237 MY 238
Y
Sbjct: 373 QY 374
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLI-TRRSLG--YAYVNFQQPADAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ ++D + FS G I S
Sbjct: 60 LDTMNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ + ++G SKG+
Sbjct: 120 KVAQDEKGQSKGY 132
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 218/484 (45%), Gaps = 113/484 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G SKG+GFV
Sbjct: 86 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ T E+A +A+ K+ G + ++YVG F+ R++R+ + F N+YVKN D
Sbjct: 146 HFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWD 205
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L + F ++GK+ S + D G S+GFG + +Y
Sbjct: 206 DDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIY 265
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+A L+A+FE++++ER + Y KN++ +DE L++ FSQ GTI+S
Sbjct: 266 VGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITS 325
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M T+ G SKG C +A+AQ K +R + L
Sbjct: 326 SKVM-TENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQ 384
Query: 238 YAK----------------QG-----PGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
Y + QG P + FP + + + QA R GG
Sbjct: 385 YMQRMAGMRMPAPQPNQMFQGSSYFMPSMQPRYFPSQMAQVRASPRWQQAAPMRPGGQAT 444
Query: 277 NGFSPPPPSPLF-----------------LMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ 319
+ P F A TQ M G + M +
Sbjct: 445 AFQAMPAAGSRFPAATAPRAAAAAVRQVAPQAMARTTQPPAQRMAGR----VAAMANQQP 500
Query: 320 KPSYNYPISQ---PRAGQAAANNLTNGNHRAAASNENL-SSMLVATSPDERKDILGQRLY 375
+P Y Y + P GQ A N + + E L S+ML A P E+K +LG+RL+
Sbjct: 501 RPGYKYTATMRNPPSGGQPQAMNPSAVH---VQGQEPLTSTMLAAAPPQEQKQMLGERLF 557
Query: 376 PLVK 379
PL++
Sbjct: 558 PLIQ 561
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 13 SLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMV-TRRSLG--YAYVNFQQPADAERA 69
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D + FS G I S
Sbjct: 70 LDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSC 129
Query: 207 KIMRTDRGISKG 218
K+ + + G SKG
Sbjct: 130 KVAQDETGSSKG 141
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 149/274 (54%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 81 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFV 140
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E + F N+YVKN+D ++T
Sbjct: 141 HYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKNQFTNIYVKNVDPEVT 200
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E V+ F FG+ITS V+ D G S+GFG + L+V
Sbjct: 201 QEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKKAER+ LR +E+ + E+ Y KN+ D++D+ L+ F G I+S
Sbjct: 261 ARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRGEFEPFGNITSA 320
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++GISKG + E T + M K
Sbjct: 321 KVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNK 354
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + Q+F FG I S+ + V EGKS+G+GFV + T E A A+E L
Sbjct: 189 NIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEAL 248
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ V+ +L+V ++A+R +E S + NLY+KNL+DD+ +E L
Sbjct: 249 HDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLR 308
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D G SKGFG +K LYV+ AQ+
Sbjct: 309 GEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 368
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 369 REVRRQQLESQI 380
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 162/318 (50%), Gaps = 67/318 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN ++ FS FG+I S KV ++ SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++K+R + LY KN++D +D+ L + FS GTI+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGL----ASTIFP 251
Y + G+ IFP
Sbjct: 376 YMRHMTGMRMQQLGQIFP 393
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 53/241 (21%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L I+ L FS G + S +V V+S+ +S GY +V + P E
Sbjct: 1 MASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + L+ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLLRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKTIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
FG I S ++ D SKG+G K +YV
Sbjct: 112 AFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG-------- 163
Query: 163 KAILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
K I R + E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SK
Sbjct: 164 KFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSK 223
Query: 218 G 218
G
Sbjct: 224 G 224
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 153/273 (56%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL +IDN L F+ FG + S K+ + G+SKGYGFV
Sbjct: 113 MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ E+A +AI++L G + ++YVG F+R +R S F N+YVKNL + T++
Sbjct: 173 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDD 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L F ++G ITS V+ +DA+G SK FG KV YV
Sbjct: 233 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVG 292
Query: 155 RAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVK 207
+AQ+K+ER+A LRA+FE+ RK + E LY KN++D V++ +L + FS+ GTI+S K
Sbjct: 293 KAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCK 352
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+M +G+SKG T E T L +M K
Sbjct: 353 VMLDPQGLSKGSGFVAFLTPEEATRALNVMNGK 385
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA A+E L
Sbjct: 219 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 278
Query: 76 QGATVERMEL-YVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEIL 120
GAT ++ YVG R+++R E + F NLY+KNLDD + +E L
Sbjct: 279 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKL 338
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
E FSEFG ITS + D G SKG G K LYVA AQ
Sbjct: 339 XELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 398
Query: 158 KKAERKAILRAQFERMRKERA 178
+K ERKA L+AQF ++R A
Sbjct: 399 RKEERKARLQAQFAQIRSPGA 419
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 41/236 (17%)
Query: 12 SGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESA 68
+G NA +V +L + I +L+ +F + + S +V Q + S GY +V +++P+ A
Sbjct: 34 AGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDA 93
Query: 69 LDAIEK-----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
+A+E L G + M + P IR+ S F N+++KNLD + + L++
Sbjct: 94 TNALEHLNFTPLNGKPIRIMFSHRDPSIRK-------SGFANVFIKNLDPSIDNKALLDT 146
Query: 124 FSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------F 170
F+ FG + S I+ D NG SKG+G +V Q++A + AI R F
Sbjct: 147 FAAFGTVLSCKIALDNNGQSKGYG----FVQFEQEEAAQNAIKRLNGMLINDKQVYVGLF 202
Query: 171 ERMRKER--------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
R ++ +Y KN+++ + +LK F + G+I+S +MR G+SK
Sbjct: 203 VRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSK 258
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 222/488 (45%), Gaps = 126/488 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFP-------------------MPLMLSNL------------QKPS 322
Q +G G P +P + NL
Sbjct: 435 PRWQ-QGGRPQGFQGMPSALRQSGPRPALRHLAPTGVPTAVPNLAPRAAVAAAAPRAVAP 493
Query: 323 YNY--------PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
Y Y P QP +A Q A + G A SML A P E+K +LG+R
Sbjct: 494 YKYASSVRSPHPAIQPLQAPQPAVH--VQGQEPLTA------SMLAAAPPQEQKQMLGER 545
Query: 374 LYPLVKKL 381
L+PL++ +
Sbjct: 546 LFPLIQTM 553
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVMKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 220/495 (44%), Gaps = 124/495 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E + F N+Y+KN DDM
Sbjct: 144 HFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FGK S+ + D NG SKGFG ++LYV
Sbjct: 204 DDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE+M++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLASTIFP---VHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPL 287
++ GP L S P P + Q P R P+ P P+
Sbjct: 383 MQRLATMRALPGPLLGSFQTPSGYFLPPMPQ--------PQTRAAFYGPSPVVPVRPATR 434
Query: 288 FLMAPDSVTQYRGAMMNGHANFPMPLMLSNL-------------------------QKPS 322
+ P Y A A P +LSN+ Q S
Sbjct: 435 WSAQPSRPPLYPEATPILRAAVPPRRLLSNISTTRQASTQVPRVPPQAQRLVNIGTQTVS 494
Query: 323 YNYPISQ--PRAGQ-----AAANNLTNGNHRAAA--------SNENLSS-MLVATSPDER 366
P S PR Q ++A N+ H E L++ +L A P E+
Sbjct: 495 TRLPSSSALPRGTQQYKYSSSARNMQPMGHMPPVGEPAVHVQGQEPLTASLLAAAPPQEQ 554
Query: 367 KDILGQRLYPLVKKL 381
K ++G+RLYPL+ L
Sbjct: 555 KQMIGERLYPLIHVL 569
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + KN++D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 202 TISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
I S K++ + G S+G+ +T T + M
Sbjct: 124 NILSCKVVCDENG-SRGYGFVHFETHEAATRAIETM 158
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 168/325 (51%), Gaps = 39/325 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW N AR SGIGN +VKNL ++ID+ L +FSKFG I S KVV + GKSKGYGFV
Sbjct: 93 MWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVV-EEHGKSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ + +SAL A L ++ +LYV F+++++R S F NLYVKNL DMT
Sbjct: 152 QFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMT 211
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ FS FG+I S VI +D NG S+GFG S+ L+V
Sbjct: 212 QDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFV 271
Query: 154 ARAQKKAERKAILRAQFE-----RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ KAERK IL+ +++ M K +A LY KN+ +D +L++ FS G I S
Sbjct: 272 GRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSA 331
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QGPGLASTIFPVHPTLYQRALQVY 264
K+MR D G S+G + E L + QG L + Q ALQ Y
Sbjct: 332 KVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDR-QLALQTY 390
Query: 265 -QAPDFRHGGMIPNGFSPPPPSPLF 288
P + + + PPP SP++
Sbjct: 391 FSVPQSQPPYLSDSSVVPPPISPVY 415
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 42/231 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQYSTPESALDAIEK-- 74
+V +L + + L +FS G I++ + S G+S YG+V + P A A+
Sbjct: 22 YVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNLN 81
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L+G + M P R+ S NLYVKNLD + L FS+FG I
Sbjct: 82 HTYLKGKLMRIMWCQRNPCARK-------SGIGNLYVKNLDASIDSAGLQSLFSKFGTIL 134
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S + ++ +G SKG+G K LYV+R KK+ER
Sbjct: 135 SCKVVEE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTA--T 191
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++ ++ LY KN++ ++ + FS G I S IM+ G S+G
Sbjct: 192 SYDELK--FTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRG 240
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 144/250 (57%), Gaps = 34/250 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 124 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D ++T
Sbjct: 184 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVT 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F ++G ITS IS+D +G S+GFG S+ LYV
Sbjct: 244 DEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 304 GRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTITSA 363
Query: 207 KIMRTDRGIS 216
K+MR G+S
Sbjct: 364 KVMRDTVGVS 373
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 101/241 (41%), Gaps = 85/241 (35%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F K+GDI S+ + GKS+G+GFV Y ++A A+++L
Sbjct: 232 NVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDEL 291
Query: 76 QGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG +RR A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 292 NDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLR 351
Query: 122 EKFSEFGKITS-------LVISKDAN---------------------------------- 140
E FS FG ITS + +S D++
Sbjct: 352 ELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTETK 411
Query: 141 -------GTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
G SKGFG K LYVA AQ+K RK+ L A
Sbjct: 412 KPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASI 471
Query: 171 E 171
+
Sbjct: 472 Q 472
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS G + S +V +S GY +V Y+ A+E L
Sbjct: 53 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLN 112
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 113 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNKALHDTFAAFGNIL 165
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 166 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 225
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV + E ++ F + G I+S I R D G S+G
Sbjct: 226 MKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRG 272
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 146/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG + S KV G SKGYGFV
Sbjct: 148 MWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFV 207
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y + E+A AI+ + G + +++VG I R +R I E S F NLYVKNLD ++
Sbjct: 208 HYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVG 267
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE FS+FG ITS VI KD G SKGFG K ++V
Sbjct: 268 EEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFV 327
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR Q+E+ + E+A Y KN+ D+VD+ +L+ F GTI+S
Sbjct: 328 GRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSC 387
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 388 KVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNK 421
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + + +FS+FG I S+ + +EG SKG+GFV + E A A+E+L
Sbjct: 256 NLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEEL 315
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
+ ++VG ++++R +E +NLY+KNL+DD+ +E L
Sbjct: 316 DNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLR 375
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D GTSKGFG +K LYVA AQ+
Sbjct: 376 AEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQR 435
Query: 159 KAERKAILRAQF 170
K RK L +Q
Sbjct: 436 KDVRKQQLESQI 447
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV LD +TE +L E F+ G + S+ + +DA T + G YV +A
Sbjct: 75 SLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAV-TRRSLG--YAYVNYLNYNDGERA 131
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ + + ++R + + KN++ +D L F+ GT+ S
Sbjct: 132 LDQLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSC 191
Query: 207 KIMRTDRGISKGH 219
K+ D G+SKG+
Sbjct: 192 KVATDDSGLSKGY 204
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 198/451 (43%), Gaps = 98/451 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG I S KV V + G SKGYGFV
Sbjct: 143 MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFV 202
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +SA AIE + G + ++YVG I R DR + ++F N+YVKNLD D T
Sbjct: 203 HFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTT 262
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F ++GKITSL ++KD G +GF K LYV
Sbjct: 263 EEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYV 322
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E+M+ E+ Y KN+ DE+D+ LK FS GTI+S
Sbjct: 323 GRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSA 382
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------- 259
K+M + SKG E T + M + G P++ L QR
Sbjct: 383 KVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGK-----PLYVALAQRKEVRRSQ 437
Query: 260 -ALQVYQAPDFRHGGMI---------------------PNGFSPPPPS----PLFLMAPD 293
Q+ FR + P G+ PP + P+ P
Sbjct: 438 LEAQIQARNQFRLQQQVAAAAGIPAAAVQYGAAPIVFGPGGYPMPPVNARGMPIVPGQPG 497
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNE- 352
++ Y G P Y P + P A + G+ A A E
Sbjct: 498 AIPMYSGM-------------------PQYGAPGAYPGVAPAEVPAV-EGDKPADAPTEA 537
Query: 353 ----NLSSMLVATSPDE-RKDILGQRLYPLV 378
L++ +A +P+E RK ++G+ LYP V
Sbjct: 538 ALPARLTAEDLARAPEENRKQMIGEFLYPKV 568
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 146/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F FG++ S KV + G+SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I R +R + + F NLY+KNLD ++T
Sbjct: 176 HYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVT 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F+ +G +TS +++ D G SKGFG K L+V
Sbjct: 236 QEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKKAER+ LR +E+ + E+ Y KN+ D+ D+ +L+ F G I+S
Sbjct: 296 ARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSC 355
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 356 KVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 171/418 (40%), Gaps = 85/418 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL + + + ++F+++G++ SS V +EGKSKG+GFV Y E A A+++L
Sbjct: 224 NLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDEL 283
Query: 76 QGATVERMELYVGPFIRRADR------------IQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +L+V ++A+R +++ S + NLY+KNL+DD ++ L
Sbjct: 284 HDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLR 343
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D GTSKGFG +K LYV+ AQ+
Sbjct: 344 AEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 403
Query: 159 KAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ R+ L +Q + + R + I Y+ G +
Sbjct: 404 REVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMM--GYGQP 461
Query: 219 HCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNG 278
M RI Y G ++ PV P Y + Q Y P G P G
Sbjct: 462 GMMPP-----------RIRYPN---GQVPSMPPV-PGPYGQGPQPYGMP-----GYPPRG 501
Query: 279 FSPPP------PSPLFLMAPDSVTQYRGAMMNGHANFPMP--------------LMLSNL 318
PP SP P + + G NG A P P
Sbjct: 502 APRPPVARGPGSSPTHPSVP--MPRANGPAPNGGAARPAPQGAPAGSRAPPPGAPAPGRA 559
Query: 319 QKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSS-MLVATSPDERKDILGQRLY 375
+P+YN P ++P+ A +S NL++ L A SP E+K +LG+ +Y
Sbjct: 560 PQPAYNKPQARPQGAPVTAQPAAAPQQ---SSLPNLTADQLAAASPMEQKQMLGEVIY 614
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV LD +TE +L E F+ G + S+ + +DA T + G L A ++ E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADGERALE 101
Query: 162 R----------KAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+ I+ +Q + ++ + KN+++ +D L F G + S K+
Sbjct: 102 QLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKV 161
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 162 ATDEHGRSKGY 172
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 219/489 (44%), Gaps = 110/489 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 105 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 163
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 164 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 223
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 224 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 284 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 343
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 344 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 402
Query: 239 AKQGPGLAS----TIFPVHP---------------TLYQRALQVYQ---APDFRHGGMIP 276
++ + + I P P Y A Q+ Q +P + G P
Sbjct: 403 MQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTAQGARP 462
Query: 277 NGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS 322
+ F +P PP P P ++ R A + P P + P+
Sbjct: 463 HPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPA 522
Query: 323 ------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQ 372
Y Y + P+ A +T + +SML + P E+K +LG+
Sbjct: 523 VRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGE 582
Query: 373 RLYPLVKKL 381
RL+PL++ +
Sbjct: 583 RLFPLIQAM 591
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 215/496 (43%), Gaps = 123/496 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D NG SKGFG K +YV
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQ--------------GPGLASTIFPVHPTLYQRA--------LQVYQAPDFRHGGMIP 276
++ P +S P RA Q+ +P + G P
Sbjct: 383 MQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARP 442
Query: 277 NGF----------SPPPPS-----PLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK- 320
+ F +P PP+ P P V+ R A + P P +
Sbjct: 443 HPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVVSAQRVANTSTQTMGPRPTTAAAAATS 502
Query: 321 -----PSYNYPI----------SQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE 365
P Y Y +QP+ G A SML A P E
Sbjct: 503 AVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA------SMLAAAPPQE 556
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 557 QKQMLGERLFPLIQAM 572
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/489 (30%), Positives = 222/489 (45%), Gaps = 124/489 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D G S+GFG K ++V
Sbjct: 204 DERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE +++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI-----------FPVHPTLYQRALQVYQAPD--------------- 268
++ G+ A+TI P P R Y AP+
Sbjct: 383 MQRIAGMRAMPANTIINQFQPTSGYFMPAVPQAQNRT--TYYAPNQLAQMRPNPRWQQQG 440
Query: 269 -FRHGGMIPNGFSPPPP-SPLFLMAPDSVTQYRGAMMNGHANFPMPLM------------ 314
+PN P P + M P+S +Q G + P P M
Sbjct: 441 GRGGFQGMPNTLRQPGPRGNMRQMTPNSSSQ--GPRGSAQTMAPRPSMGVPGPRNVTPYK 498
Query: 315 -LSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLS-SMLVATSPDERKDILGQ 372
+ ++ P N + QP A Q A ++ E L+ SML A P E+K +LG+
Sbjct: 499 YATGVRNP--NPQVVQPIALQQPAVHVQ--------GQEPLTPSMLAAAPPQEQKQMLGE 548
Query: 373 RLYPLVKKL 381
RL+PL++ +
Sbjct: 549 RLFPLIQAM 557
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV +Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFSQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQREAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 153/265 (57%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ S + S+GY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSSKVM-SDDAGSRGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +A AIE + GA ++ L+VGPF R DR E + F N+Y+KN DDM
Sbjct: 143 HFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNKANEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS FGKI S+ + D+ G SKGFG + L+V
Sbjct: 203 DERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE+M++ER +LY KN++D +D+ L++ FS G+IS V
Sbjct: 263 GRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M+ + G SKG + + E T
Sbjct: 323 KVMKEE-GRSKGFGLICFSSPEEAT 346
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ ++KNL +ID+ +L + FS FG I KV+ +EG+SKG+G + +S+PE A
Sbjct: 289 RFRGV-KLYIKNLDDSIDDERLRREFSSFGSISRVKVM-KEEGRSKGFGLICFSSPEEAT 346
Query: 70 DAIEKLQG 77
A+ ++ G
Sbjct: 347 KAMVEMNG 354
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 19/165 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L ++TE++L +KFS G + S+ I +D S G+ L++A AQK +
Sbjct: 11 SLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHP 254
D G S+G+ Q++ T+ R + A G L V P
Sbjct: 131 SDDAG-SRGYAFVHFQSQ---TAADRAIEAMNGALLKGCRLFVGP 171
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 144/252 (57%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 67 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFV 126
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F+ R++R Q+ F N+Y+KN DD+
Sbjct: 127 HFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLD 186
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GKITS + D G KGFG KVLYV
Sbjct: 187 DEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYV 246
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER A L+ +FE+++ +R Y KN++D +D+ L++ F+ GTI+S
Sbjct: 247 GRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSA 306
Query: 207 KIMRTDRGISKG 218
K+M G SKG
Sbjct: 307 KVMTDSNGRSKG 318
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 146/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F FG++ S KV + G+SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I R +R + + F NLY+KNLD ++T
Sbjct: 176 HYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVT 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F+ +G +TS +++ D G SKGFG K L+V
Sbjct: 236 QEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKKAER+ LR +E+ + E+ Y KN+ D+ D+ +L+ F G I+S
Sbjct: 296 ARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSC 355
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 356 KVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 168/417 (40%), Gaps = 81/417 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL + + + ++F+++G++ SS V +EGKSKG+GFV Y E A A+++L
Sbjct: 224 NLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDEL 283
Query: 76 QGATVERMELYVGPFIRRADR------------IQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +L+V ++A+R +++ S + NLY+KNL+DD ++ L
Sbjct: 284 HDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLR 343
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D GTSKGFG +K LYV+ AQ+
Sbjct: 344 AEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 403
Query: 159 KAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ R+ L +Q + + R + I Y+ G +
Sbjct: 404 REVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMM--GYGQP 461
Query: 219 HCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNG 278
M RI Y G ++ PV P Y + Q Y P G P G
Sbjct: 462 GMMPP-----------RIRYPN---GQVPSMPPV-PGPYGQGPQPYGMP-----GYPPRG 501
Query: 279 FSPPP------PSPLFLMAPDSVTQYRGAMMNGHANFPMP--------------LMLSNL 318
PP SP P + + G NG A P P
Sbjct: 502 APRPPVARGPGSSPTHPSVP--MPRANGPAPNGGAARPAPQGAPTGSRAPPPGAPAPGRA 559
Query: 319 QKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLY 375
+P+YN P ++P+ A + + + L A SP E+K +LG+ +Y
Sbjct: 560 PQPAYNKPQARPQGAPVTAQPAAVPAPQQSGLPNLTADQLAAASPMEQKQMLGEVIY 616
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV LD +TE +L E F+ G + S+ + +DA T + G L A ++ E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADGERALE 101
Query: 162 R----------KAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+ I+ +Q + ++ + KN+++ +D L F G + S K+
Sbjct: 102 QLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKV 161
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 162 ATDEHGRSKGY 172
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 228/491 (46%), Gaps = 127/491 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L FS FG+I S KV + G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + +YVG FI R +R +E F N+YVKN +D +
Sbjct: 136 HFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E+L + F ++G+ITS + +G S+GFG K LY
Sbjct: 196 DEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 256 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K +R ++L
Sbjct: 316 AKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQ 374
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y ++ +AS Q+ Q++Q P G +P+ PP+P + P +TQ
Sbjct: 375 YMQR---MASMRM-------QQMGQIFQ-PSGASGFFVPSL----PPAPRYY-GPAQMTQ 418
Query: 298 YRGAMMNGHANFPM------PLMLSNLQ---KPSYNYPI---------SQPRAGQAA--- 336
R +A P+ +N+Q +P+ P ++P GQ
Sbjct: 419 IRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAA 478
Query: 337 ----------------ANNLTNGNHRAAAS---------NENLSSMLVATSP-DERKDIL 370
AN N R + E L+S ++A +P E+K +L
Sbjct: 479 AAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 538
Query: 371 GQRLYPLVKKL 381
G+RL+PL++++
Sbjct: 539 GERLFPLIQRM 549
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPTDAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 60 LDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 120 KVAQDETGASKGY 132
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 142/263 (53%), Gaps = 34/263 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG I S KV V + G +KGYGFV
Sbjct: 154 MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFV 213
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + ESA AIE + G + ++YVG + R +R + ++F N+Y+KNLD ++T
Sbjct: 214 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F +FG+ITSL + KD N +GFG K LYV
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR ++E+M+ E+ Y KN+ DEVD+ LK FS GTI+S
Sbjct: 334 GRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSA 393
Query: 207 KIMRTDRGISKGHCMAIAQTKRE 229
KIM ++G SKG T E
Sbjct: 394 KIMTDEQGKSKGFGFVCYTTPEE 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 37/201 (18%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
EA + N ++KNL + I + +F +FG+I S +V Q K +G+GFV Y+ E
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 313
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEG---------SSFN-----NLYVKNLDD 113
A A+++L + +LYVG ++ +R +E N NL++KNL D
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQD 373
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKV 150
++ +E L +FS FG ITS I D G SKGFG K
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKP 433
Query: 151 LYVARAQKKAERKAILRAQFE 171
LYVA AQ+K R++ L AQ +
Sbjct: 434 LYVALAQRKEVRRSQLEAQIQ 454
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 201/445 (45%), Gaps = 112/445 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNLA TI+ +L+ FS FG I S K+ + + G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEE 118
+ E A AI+K+ ++ +YVG FI R+DR + FNN+YVKN + +E
Sbjct: 136 HFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDE 195
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L E F+EFG+I S + KD+ G SKGF G + LY +R
Sbjct: 196 KLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASR 255
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ + ER Y KN++DE+D+ LK+ FS+ G ISS K
Sbjct: 256 AQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAK 315
Query: 208 IMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYA 239
+M SKG C +AIAQ K +R + L +
Sbjct: 316 VMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAELAAKHT 375
Query: 240 KQGPGLASTIFPVHPTL----------YQRALQVYQAPD---------FRHGGMIPN--- 277
+ L ST P+ P L Y + ++Y AP R+G + +
Sbjct: 376 QHLNALRSTAPPMIPALMHPTQNYFHPYPQQARLYSAPGQLMQAQPRWSRNGPLAADLSQ 435
Query: 278 -GFSPPP------PSPLFLMAPDSVTQYRGAMMNGHANF-------PMPLMLSNL----- 318
S PP P+ MAP Q M AN PMP M SN+
Sbjct: 436 LAMSRPPLSNYPNPNHAVAMAP----QMNMNQMRSPANVFRTIVPTPMPSMTSNMMGMGP 491
Query: 319 ---QKPSYNYPI--SQP-RAGQAAA 337
Q+ N P+ QP AGQA A
Sbjct: 492 RQQQQQVANRPVLPVQPVLAGQAGA 516
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 45/232 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L I++ +L FS+ G + + V V S+ KS GYG+V + P+ A A+E+
Sbjct: 5 YVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSR--KSLGYGYVNFEDPKDAERALEQ 62
Query: 75 LQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G + M P +R+ S N+++KNL + ++ L + FS FG+
Sbjct: 63 MNYEVVMGRPIRIMWSQRDPSLRK-------SGLGNIFIKNLAKTIEQKELYDTFSLFGR 115
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S I+ D NG SKG+G KV+YV +++RK+
Sbjct: 116 ILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQN 175
Query: 167 RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R Q K KN E D+ +LK+ F++ G I S +M+ G SKG
Sbjct: 176 RKQ-----KFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKG 222
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFGSKVLYVARAQKKAERKA 164
LYV +L D+ ++ L KFSE G + + +D S G+G YV K +A
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYG----YVNFEDPKDAERA 59
Query: 165 ILRAQFER--------MRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSV 206
+ + +E M +R KN+ +++ EL FS G I S
Sbjct: 60 LEQMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSC 119
Query: 207 KIMRTDRGISKGH 219
KI + G SKG+
Sbjct: 120 KIAMDENGNSKGY 132
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 151/275 (54%), Gaps = 37/275 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S K + S E SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK-IASDENGSKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + ++YVG FI R +RI + FNN+Y+KN D++
Sbjct: 144 HFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF------------------------GSKVLY 152
++ + E F FGKI S + D G S+GF G KVLY
Sbjct: 204 DDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLY 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
RAQKKAER+A L+ +FE+++ ER Y KN++D VD+ L++ FSQ GTI+S
Sbjct: 264 AGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITS 323
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
++M ++ G SKG + E T + M +
Sbjct: 324 ARVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGR 357
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 40/209 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ K+ ++F FG I S+KV+ + GKS+G+GFV Y PE+A A++ L
Sbjct: 192 NVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNL 251
Query: 76 QGATVERME-LYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + + LY G ++A+R E F NLYVKNLDD + +E L
Sbjct: 252 NGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERL 311
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++FS+FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 312 RKEFSQFGTITSARVMSEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQ 370
Query: 158 KKAERKAILRAQF-ERMRKERAELYKNIN 185
+K +R+A L +Q+ +RM R + N
Sbjct: 371 RKEDRRAHLASQYMQRMTTMRQQQTAQFN 399
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
KI + G SKG+
Sbjct: 129 KIASDENG-SKGY 140
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/466 (29%), Positives = 207/466 (44%), Gaps = 91/466 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN F+KNL T+D LH FS+FG+I S KV + + S+G+GFV
Sbjct: 98 MWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHANSRGFGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ T E A +AI K+ G +E L+VGPFI R +R F N+YVKN D+++++
Sbjct: 158 QFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERESTNGERRFTNVYVKNFPDNVSDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-------------------------GSKVLYV 153
+ F +G+ITS I + +GTSK F G + +Y
Sbjct: 218 DFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYA 277
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RA+K++ERK L+ +++++R ER LY KN++D +D+ +L+Q F Q GTI+S
Sbjct: 278 GRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSA 337
Query: 207 KIMRT-DR-GISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVH-PTLYQRALQV 263
K+MR DR +SKG E T + M Q G +H P +R +Q
Sbjct: 338 KVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNG-QMVGTKPIYVALHQPIEIRRQMQA 396
Query: 264 YQAPDFRHGGMIP---------------NGFSPPPPSPLFLMAPDSVTQYRGAMMNGHAN 308
Q + ++P +PP +F+ QYR N
Sbjct: 397 AQG---QRQNLLPRFQMQGMPMPQMMPFTRTAPPGAQGVFMFPGQMPGQYRQPFNNRQGQ 453
Query: 309 FPM----------------------------PLMLSNLQKPSYNYPISQPR-------AG 333
+P+ +N ++P P QP+ A
Sbjct: 454 YPVQGQQRRQGGANYNAQQQQARGQQQQARGQQQQTNARQPKGAVPAQQPQRVPAAPQAV 513
Query: 334 QAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVK 379
A +A S E L ++LV P + K ILG+RLY L++
Sbjct: 514 PAQQAAPAPQVPPSAMSKEQLMALLVNAPPAQAKQILGERLYALIQ 559
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------SKVLYVARAQK 158
+LYV +LD ++TE L E FS G + S+ + +DA T + G V+ RA
Sbjct: 25 SLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAM-TRRSLGYAYVNFHNVVDAERALD 83
Query: 159 KAERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKI 208
I M K R KN++ VD L FSQ G I S K+
Sbjct: 84 TLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKV 143
Query: 209 MRTDRGISKGHCMAIAQTKRE 229
+ S+G +T E
Sbjct: 144 SMDEHANSRGFGFVQFETAEE 164
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 224/484 (46%), Gaps = 109/484 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S KV V+ G+SKGYGFV
Sbjct: 85 MWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A+ AIEKL G + +++VG F R +R++E F N+++KNL +
Sbjct: 145 HFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E F E G + S+ ++ D NG S+ FG K ++V
Sbjct: 205 DAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFV 264
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ +FE+++ ER + Y KN++D + + L+++F+ G I+S
Sbjct: 265 GRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSS 324
Query: 207 KIMRTDRGI----SKGH---C-------------------------MAIAQTKRERTSYL 234
K+M TD + SKG C +A+AQ K ER ++L
Sbjct: 325 KVM-TDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHL 383
Query: 235 RIMYAKQ-GPGLASTIFPVH----------PTLYQRALQVYQAPDFRHGGMIPNGFSPPP 283
+ Y ++ G+ FP + P + Q ++ P R + +
Sbjct: 384 QQQYMQRVTTGMRLQAFPTNQPQYGNLYMPPPIQQHPFRMSIRPTPRWSQVKYDQLVKLR 443
Query: 284 PSPLFLMAPDSVTQY----RGAMMNG-------HANFPMPLMLSN--------------L 318
FL+ P +QY RG M G P+ +N +
Sbjct: 444 SKIRFLIKP---SQYGPMVRGQMPGGPRAQNGVRGIAPITRFPANNYTARAGSRPNQSII 500
Query: 319 QKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENL-SSMLVATSPDERKDILGQRLYPL 377
KP P+ P Q A +A + + L +++L A P E+K +LG+RLYP
Sbjct: 501 YKPGVRNPLPTPAEAQIPAEQA--AQPKAPDTEQPLNATILAAAPPQEQKQLLGERLYPS 558
Query: 378 VKKL 381
+++L
Sbjct: 559 IRQL 562
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L L+ FS+ G + S +V +S GY +V + PE A AI
Sbjct: 10 MASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAI 69
Query: 73 -----EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
++L+G + M P +R+ S N+++KNLD + ++L + FS F
Sbjct: 70 DTMNFDELKGKAIRIMWSQRDPALRK-------SGVGNIFIKNLDKTIDNKMLYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S ++ + G SKG+G K ++V R + + ER
Sbjct: 123 GNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGER-- 180
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+R +R ++ KN+ E D+ +L + F + G++ SV + + G S+
Sbjct: 181 -VREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSR 232
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L + TE +L +KFS+ G + S+ + +D T + G + R + AER A
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMI-TRRSLGYAYVNFQRPE-DAER-A 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
I F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 IDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ G SKG+
Sbjct: 129 KVNVNLAGESKGY 141
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 123 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D D+T
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F +FG+ITS +S+D G S+GFG ++ LYV
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 303 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSA 362
Query: 207 KIMR 210
K+MR
Sbjct: 363 KVMR 366
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A++++
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEM 290
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 351 ELFGPYGTITSAKVMRDTN 369
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 109
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 110 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGN 162
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 163 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 222
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ +V E E ++ F + G I+S + R G S+G
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG 271
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 123 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D D+T
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F +FG+ITS +S+D G S+GFG ++ LYV
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 303 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSA 362
Query: 207 KIMR 210
K+MR
Sbjct: 363 KVMR 366
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A++++
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEM 290
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 351 ELFGPYGTITSAKVMRDTN 369
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 109
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 110 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGN 162
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D G SKG+G K ++V K +R++
Sbjct: 163 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS-- 220
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ +V E E ++ F + G I+S + R G S+G
Sbjct: 221 --KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG 271
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 157/291 (53%), Gaps = 37/291 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TIDN LH+ FS FG I S KV V + G+SKG+GFV
Sbjct: 108 MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFV 167
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A +AI+ L G + ++VGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 168 QYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKE 227
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L++ F E+G ITS V+ +G S+ FG K YV R
Sbjct: 228 DLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGR 287
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L + FS G I+S K+
Sbjct: 288 AQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKV 347
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
MR G+SKG T+ E + L M K G P++ QR
Sbjct: 348 MRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGK-----PLYVAFAQR 393
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 37/189 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L +IF ++GDI S+ V++ +GKS+ +GF+ + P++A A+++L
Sbjct: 214 NVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQEL 273
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
G + E YVG ++++R E + NLY+KNLDD + ++ L
Sbjct: 274 NGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLC 333
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FGKITS + +D NG SKG G K LYVA AQ+
Sbjct: 334 ELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 393
Query: 159 KAERKAILR 167
K +RKA+L+
Sbjct: 394 KEDRKAMLQ 402
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 35/218 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + + +L+++FS+ G + S +V V S+ +S GY +V YS P A A+E
Sbjct: 37 YVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNYSNPLDAARALEV 94
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L A + + V R + GS+ N+++KNLD + + L E FS FG I S
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKTIDNKTLHETFSSFGTILSCK 152
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAI-------------LRAQFERMRKERAELY 181
++ D G SKGFG +V +++A + AI F R ++ER +
Sbjct: 153 VAVDEAGQSKGFG----FVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVR-KQERDHSF 207
Query: 182 ----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
KN+++ + +L + F + G I+S +M
Sbjct: 208 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVM 245
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG----SKVLYVARAQKK 159
+LYV +L+ +++ L E FS+ G++ S+ + +D S G+ S L ARA +
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 160 AERKAI----LRAQFER-----MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
A+ +R + R A ++ KN++ +D L + FS GTI S K+
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVA 154
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 155 VDEAGQSKG 163
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 225/496 (45%), Gaps = 126/496 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D G SKGFG K+++V
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI------------FPV------HPTLY--QRALQVYQAPDFRHGGM 274
++ G+ A+TI P PT Y + Q+ P ++ GG
Sbjct: 383 MQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQQGGR 442
Query: 275 IPNGFSPPP-------PSP-LFLMAPDSV----------TQYRGAMMNGHA--NFPMPLM 314
P GF P P P L +AP Q G G + P
Sbjct: 443 -PQGFQGMPNAMRQSGPRPALRHLAPAGTAPASRGLPVSAQRVGVTTAGQSLAPRPPVAA 501
Query: 315 LSNLQKPSYNY---------PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDE 365
+ P Y Y P+ +A Q A + G AS ML A P E
Sbjct: 502 PAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVH--VQGQEPLTAS------MLAAAPPQE 553
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 554 QKQMLGERLFPLIQAM 569
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 100 GSSF--NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
GSS+ +LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q
Sbjct: 5 GSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQ 61
Query: 158 KKAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQ 199
+A+ F+ ++ + + KN++ +D L FS
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTK 227
G I S K++ + G SKG+ +T+
Sbjct: 122 FGNILSCKVVCDENG-SKGYAFVHFETQ 148
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 153/274 (55%), Gaps = 36/274 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL ID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 86 MYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ + E+A +AI+KL G V ++YVG F+R+ DR +G+ FNN++VKNL + T
Sbjct: 146 QFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDR--DGALYSIKFNNVFVKNLAESTT 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L F+E G ITS V+ +DA+G SK FG + YV
Sbjct: 204 DEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
+AQKK+ER+ L+ +FE+ KE + LY KN++D +++ +LK+ FS G I+S
Sbjct: 264 GKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSC 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR GIS+G T E + L M K
Sbjct: 324 KVMRDPSGISRGSGFVAFSTPEEASRALAEMNGK 357
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNLA + + +L IF++ G I S+ V+ +GKSK +GFV + + + A A+E L
Sbjct: 192 NVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEAL 251
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G ++ E YVG ++++R ++ F NLY+KNLDD + +E L
Sbjct: 252 NGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLK 311
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS+FG ITS + +D +G S+G G SK LYVA AQ+
Sbjct: 312 ELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQR 371
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF +MR
Sbjct: 372 KEERRARLQAQFSQMR 387
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIE--- 73
+V +L + + +L+ +F++ G + S +V +S GYG+V YS P+ A A++
Sbjct: 15 YVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLN 74
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L + M + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 75 FTPLNNKPIRIMYSHRDPSIRK-------SGMANIFIKNLDKGIDHKALHDTFSSFGNIL 127
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAELY- 181
S ++ DA+G SKG+G A + A K + F R + LY
Sbjct: 128 SCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYS 187
Query: 182 --------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + + ELK F++ G I+S +MR G SK
Sbjct: 188 IKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSK 231
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +LD ++T+ L + F++ G++ S+ + +D + T + G + + Q A
Sbjct: 13 SLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLS-TRRSLGYGYVNYSNPQDAARALD 71
Query: 165 IL----------RAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+L R + +RK A ++ KN++ +D L FS G I S K+
Sbjct: 72 VLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKV 131
Query: 209 MRTDRGISKGH 219
G SKG+
Sbjct: 132 ATDASGQSKGY 142
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/491 (30%), Positives = 219/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLAS----TIFPVHP-----------------TLYQRALQVYQ---APDFRHGGM 274
++ + + I P P Y A Q+ Q +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPSAIRPAAPRPPFGTMRPASTQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 207/442 (46%), Gaps = 72/442 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + + G SKGYGFV
Sbjct: 153 MWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNSKGYGFV 212
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+++ +SA AIE + G + ++YVG + R DR + ++F N+Y+KN+D ++T
Sbjct: 213 HFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVT 272
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E F +FG ITS + KD +G +GFG K LYV
Sbjct: 273 DEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYV 332
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+A LR ++E+M+ E+ Y KN++DEVD+ LK FS GTI+S
Sbjct: 333 GRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSA 392
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------- 259
K+M + G SKG + E T + M + G P++ L QR
Sbjct: 393 KVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGK-----PLYVALAQRKDVRRSQ 447
Query: 260 -ALQVYQAPDFRH----------------GGMI--PNGFSPPPPSPLFLMAPDSVTQYRG 300
Q+ FR G M P G+ P + M ++ G
Sbjct: 448 LEAQIQARNQFRMQQQVAAAGMSAQFGIPGAMYYGPGGYPLPAGARGVPMPHPNMMPPNG 507
Query: 301 AM-MNGHANFP--MPLMLSNLQKPSY-NYPISQPRAGQAAANNLTNGNHRAAASNENLSS 356
++G A P +P+ + P++ YP + Q A +NG A + N S
Sbjct: 508 KWPVDGAAPQPGMVPVYPPGVAAPNFPGYPRPVVPSEQPAGQEASNGAVPVPAFDMNAFS 567
Query: 357 MLVATSPDERKDILGQRLYPLV 378
A +P+ +K ILG+ YPL+
Sbjct: 568 ---AETPENQKQILGEYFYPLI 586
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L +IFS G + S +V + S GY +V Y + A+E+L
Sbjct: 82 YVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEELN 141
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + FS FG I
Sbjct: 142 YSLIKGRACRIMWSQRDPSLRK-------TGTGNIFIKNLDPAIDNKALHDTFSAFGTIL 194
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SKG+G K +YV + +R ++
Sbjct: 195 SCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDR----QS 250
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ EV + E F + G I+S +++ + G +G
Sbjct: 251 KFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRG 301
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERK 163
+LYV LD +TE +L E FS G + S+ + +DA S G+ + A +KA +
Sbjct: 80 SLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEE 139
Query: 164 ---AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
++++ + R+ + + KN++ +D L FS GTI S K+
Sbjct: 140 LNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVA 199
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 200 LDEYGNSKGY 209
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 223/480 (46%), Gaps = 102/480 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN D+M
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEME 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D++G S+GFG K ++V
Sbjct: 204 DEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE +++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLA-----STIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMA-- 291
++ G+ + I PT V QA + R PN + P+P +
Sbjct: 383 MQRIAGMRAMPPNAIINQFQPTSGYFMPAVPQAQN-RTTYYAPNQLAQMRPNPRWQQQGG 441
Query: 292 ---------PDSVTQ--YRGAMMN----GHANFPMPLMLSNLQKPSYNYPISQPRAGQAA 336
P S+ Q RG M + G + P S +PS P + +
Sbjct: 442 RGQGGFQGMPSSLRQPGPRGNMRHMSPSGGSQGPRASGQSMAPRPSMGVPGPRTMSPYKY 501
Query: 337 ANNLTNGNHRAA--------------ASNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
A ++ N N + E L+ SML A P E+K +LG+RL+PL++ +
Sbjct: 502 ATSVRNPNPQVVQPIALQQAQPAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAM 561
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV +Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFSQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 63/307 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
E+ L + F +FG I+S V+ +D +G S+ F G VLYV
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +LK+ FS+ G ++S
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K +R ++L+ ++
Sbjct: 362 KVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALF 421
Query: 239 AK-QGPG 244
++ + PG
Sbjct: 422 SQIRAPG 428
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ E + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPL--FERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + + A K + F R R+ERA
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-RQERARDENTPTPRF 228
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ E EL++ F + G ISS +MR G S+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----SK 149
AD+ SS LY +LD +TE L + F + S+ + +D N S G+ S
Sbjct: 42 ADQTHPNSS---LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSN 98
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQ 199
RA + + M R KN++ +D L + FS
Sbjct: 99 PNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSS 158
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
GTI S K+ G SKG+ Q ++E ++ I
Sbjct: 159 FGTILSCKVAMDVTGRSKGY--GFVQFEKEESAQAAI 193
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQREAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 151/271 (55%), Gaps = 31/271 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N F+KNL TID+ LH FS FG+I S KV G+SKGYGFV
Sbjct: 105 MYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFV 164
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ + E+A +AI+KL G + ++YVG F+R+ +R S+ FNN+YVKNL + T+E
Sbjct: 165 QFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDE 224
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E G ITS V+ +DA+G SK FG K YV +
Sbjct: 225 DLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGK 284
Query: 156 AQKKAERKAILRAQFERM-----RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
AQKK+ER+ L+ +FE+ + + LY KN++D V++ +LK+ FS GTI+S K+M
Sbjct: 285 AQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVM 344
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
GIS+G T E + L + K
Sbjct: 345 HDPSGISRGSGFVAFSTPEEASRALAELNGK 375
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 43/230 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L+ +F++ G + S +V +S GYG+V YS P+ A A++ L
Sbjct: 34 YVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLN 93
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ L + P IR+ S N+++KNLD + + L + FS FG I
Sbjct: 94 FTPLNNKPLRIMYSHRDPSIRK-------SGMANIFIKNLDKTIDHKALHDTFSSFGNIL 146
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL-R 167
S ++ DA+G SKG+G K +YV +K ER + L
Sbjct: 147 SCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSN 206
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+F + KN+ + + +LK F + G I+S +MR G SK
Sbjct: 207 IKFNNI------YVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSK 250
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD ++T+ L + F++ G++ S+ + +D + S G+G YV + + +
Sbjct: 32 SLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYG----YVNYSNPQDAAR 87
Query: 164 AI------------LRAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISS 205
A+ LR + +RK A ++ KN++ +D L FS G I S
Sbjct: 88 ALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILS 147
Query: 206 VKIMRTDRGISKGH 219
K+ G SKG+
Sbjct: 148 CKVATDASGQSKGY 161
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 205/444 (46%), Gaps = 70/444 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEG------- 52
MWS + R SGIGN F+KNL +IDN L+ FS FG+I S KV +++G
Sbjct: 80 MWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNV 139
Query: 53 KSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ---EGSSFNNLYVK 109
+S GYGFV + T E+A AI K+ G + +++VGPF+++ +R++ SF N+YVK
Sbjct: 140 ESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTERLKILSNEDSFTNIYVK 199
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------------- 147
NLD + E+ L E FS+FG+I + V+ + NG SK FG
Sbjct: 200 NLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNEKDF 259
Query: 148 -SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQ 199
+K L+V RAQKK ER+A L+ F+++++E+ Y KN++D VD+ L+Q FS+
Sbjct: 260 KNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSK 319
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
G I+S K+M +D S+G +T L M + P +R
Sbjct: 320 FGDITSAKVM-SDNKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRR 378
Query: 260 ALQVYQAPDFRHGGMIP----------NGFSPPPPSPLF-----LMAPDSVTQYRGAM-- 302
+ Q + MIP G PPP S + + Q RG M
Sbjct: 379 SQLEAQYNARKQPQMIPQMMPQFFIPAQGAFPPPGSQIKPRWQPVAGGRQSNQNRGGMSR 438
Query: 303 --------MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENL 354
G+AN + N P QP Q N A S++
Sbjct: 439 GGSSQRGARGGNANTAKNAGRIKYNNNARNQPREQP---QQTTPNTQEAQTTQAPSDQLT 495
Query: 355 SSMLVATSPDERKDILGQRLYPLV 378
+ L S ++K +LG+RL+PLV
Sbjct: 496 AEYLAKLSEQDQKQLLGERLFPLV 519
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 140/252 (55%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV G+SKG+GFV
Sbjct: 134 MWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
+ +PE+A AIE + G + E+YVGP + R DR ++E SF N+YVKN+D + +
Sbjct: 194 HFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEAS 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + E F+ FG +TS + KDA G S+GF K LYV
Sbjct: 254 EEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAE-------LYKNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER L+ Q+E R E+ KN++D +D+ +LK+ F GTISSV
Sbjct: 314 GRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSV 373
Query: 207 KIMRTDRGISKG 218
K+M + G SKG
Sbjct: 374 KVMIDESGKSKG 385
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E + N +VKN+ ++ ++F+ FG + S + EGKS+G+ FV Y E+
Sbjct: 234 EEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEA 293
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDD 113
A+ +IE L + +LYVG ++++R++E S NL+VKNLDD
Sbjct: 294 AVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDD 353
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKV 150
+ +E L E+F FG I+S+ + D +G SKGFG K
Sbjct: 354 SIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKP 413
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAEL 180
LYVA AQ RK + R+Q E+ + R +L
Sbjct: 414 LYVALAQ----RKDVRRSQLEQQIQARNQL 439
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L +I+ L +IFS G + S +V K S GY +V Y + AI++L
Sbjct: 63 YVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDELN 122
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ V+ + + + D + + N+++KNL + + L + FS FG+I S ++
Sbjct: 123 YSVVKGQPIRI--MWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVA 180
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D G SKGFG + +YV + +R++ L E +
Sbjct: 181 TDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKL----EEV 236
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCM 221
K +Y KNI+ E E E+K+ F+ GT++S + + G S+G
Sbjct: 237 IKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAF 285
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV L+ + E +L E FS G+++S+ + +DA T + G YV K KA
Sbjct: 61 SLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDAL-TKRSLG--YAYVNYHNVKDGEKA 117
Query: 165 ---------------ILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSV 206
I+ +Q + ++ E KN++ +D L FS G I S
Sbjct: 118 IDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSC 177
Query: 207 KIMRTDRGISKG 218
K+ + G SKG
Sbjct: 178 KVATDNFGQSKG 189
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 169/339 (49%), Gaps = 74/339 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
Y + G+ Q+ Q+YQ P+ G +P
Sbjct: 376 YMRHMTGMR----------MQQLGQIYQ-PNAASGFFVP 403
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 37/233 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L ++ L FS G + S +V V+++ +S GY +V + P A
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 71 AIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A++ + V + + P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQF 170
FG I S ++ D G SKG+G A + K I R +
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG 224
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 213/459 (46%), Gaps = 93/459 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN L+ FS FG+I S KVV G SKG+GFV
Sbjct: 76 MWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y + ESA AIEK+ G +E +++V F R DR++E F NL+VKNL D
Sbjct: 135 HYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWD 194
Query: 117 EEILVEKFSEFGKITSL-VISKDANGTSKGFG-----------------------SKVLY 152
+ L++ F +FG++ S VI + G SK G K LY
Sbjct: 195 TDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLY 254
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
RAQKKAER + L+A++E++++ER + Y KN++D +D+ L++ F Q G I+S
Sbjct: 255 CGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITS 314
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K++ G SKG C + +AQ K +R ++L+
Sbjct: 315 AKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQ 374
Query: 238 YAKQ-GPGLASTIFPVHPTLYQRALQVYQAPDF-------RHGGMIPNGFSPPPPSPLFL 289
Y ++ G+ F + + Q +Q P + + M P G +P +
Sbjct: 375 YMQRVSTGIRMQAFMGNQVVNQN----FQPPRYILPTMQGQPVQMFPQGTPMVRATPRW- 429
Query: 290 MAPDSVTQ----YRGAM-MNGHANFPMPLMLSNLQKPS--YNYPISQPRAGQAAANNLTN 342
P+ Q RG M G F + + N+Q PS P P Q A +
Sbjct: 430 APPNQRVQMPGMVRGRMAQQGGPQFRLTPSVRNVQIPSEVIQMPPQMPHQNQPAGDQ--- 486
Query: 343 GNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
A SSML +P E+K +LG+RL+PL++ +
Sbjct: 487 ------APETLTSSMLANANPQEQKQMLGERLFPLIQSM 519
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G SKGYGFV
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I R +R I E + F NLY+KN+D ++T
Sbjct: 180 HYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E F E G +TS VI +D G S+GFG + L+V
Sbjct: 240 DEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFV 299
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKKAER+ LR E+ R E+ Y KN++D+VD+ +L+ F GTI+S
Sbjct: 300 SRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSA 359
Query: 207 KIMRTDRGISKG 218
K+MR D+G+SKG
Sbjct: 360 KVMRDDKGVSKG 371
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + +F + G++ SS + +EG+S+G+GFV Y T E A A++ L
Sbjct: 228 NLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNL 287
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEILV 121
+L+V ++A+R +E + NLYVKNLDDD+ +E L
Sbjct: 288 NDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLR 347
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
+F FG ITS + +D G SKGF GSK LYV+ AQ+
Sbjct: 348 AEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQR 407
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 408 REVRRQQLESQI 419
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L T+ L +IF+ G + S +V +S GY +V Y A+E+L
Sbjct: 49 YVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLN 108
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ ++ + P +R+ + N+++KNLD+ + + L + F+ FG +
Sbjct: 109 YSLIKNRPCRIMWSQRDPALRKTGQ-------GNIFIKNLDEQIDNKALHDTFAAFGNVL 161
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D +G SKG+G K +YV + ER++
Sbjct: 162 SCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQS---- 217
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+ + M+ + LY KNI+ EV + E + F + G ++S I R + G S+G +T
Sbjct: 218 KIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETH 277
Query: 228 RE 229
E
Sbjct: 278 EE 279
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 153/264 (57%), Gaps = 41/264 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S +V + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
++ L E F ++G ITS V+SKD +G S+GFG K++
Sbjct: 205 DDKLKEMFEKYGTITSHKVMSKD-DGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIM 263
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 323
Query: 205 SVKIMRTDRGISKGH---CMAIAQ 225
SVK+M D G SKG C ++A+
Sbjct: 324 SVKVMMED-GRSKGFGFVCFSLAE 346
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 39/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + + KL ++F K+G I S KV+ +GKS+G+GFV + P +A A+ L
Sbjct: 193 NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADL 252
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E +YVG ++A+R QE F NLYVKNLDD + +E L
Sbjct: 253 NGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERL 312
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS+ + + +G SKGFG SK LYVA AQ
Sbjct: 313 RKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQ 371
Query: 158 KKAERKAILRAQF 170
+K +RKA L +Q+
Sbjct: 372 RKEDRKAHLASQY 384
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + F+ FG I S KV++ ++G+SKG+GFV +S E A
Sbjct: 292 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSVKVMM-EDGRSKGFGFVCFSLAEEAT 349
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 350 KAVTEMNGRIVGSKPLYVALAQRKEDR 376
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +DA T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAV-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
++ + + G SKG+
Sbjct: 129 RVAQDESGSSKGY 141
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 141/263 (53%), Gaps = 34/263 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG I S KV V + G +KGYGFV
Sbjct: 140 MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFV 199
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + ESA AIE + G + ++YVG + R +R + ++F N+Y+KNLD ++T
Sbjct: 200 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 259
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F +FG+ITSL + KD N +GFG K LYV
Sbjct: 260 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 319
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E+M+ E+ Y KN+ DEVD+ LK FS GTI+S
Sbjct: 320 GRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSA 379
Query: 207 KIMRTDRGISKGHCMAIAQTKRE 229
KIM ++G SKG T E
Sbjct: 380 KIMTDEQGKSKGFGFVCYTTPEE 402
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 37/201 (18%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
EA + N ++KNL + I + +F +FG+I S +V Q K +G+GFV Y+ E
Sbjct: 240 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 299
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEG---------SSFN-----NLYVKNLDD 113
A A+++L + +LYVG ++ +R +E N NL++KNL D
Sbjct: 300 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQD 359
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKV 150
++ +E L +FS FG ITS I D G SKGFG K
Sbjct: 360 EVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKP 419
Query: 151 LYVARAQKKAERKAILRAQFE 171
LYVA AQ+K R++ L AQ +
Sbjct: 420 LYVALAQRKEVRRSQLEAQIQ 440
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 170/330 (51%), Gaps = 51/330 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SGIGN F+KNL +IDN ++ FS FG+I S KV + +G SKGYGFV
Sbjct: 86 MWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKGYGFV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + E+A AIEK+ G + ++YVG FI RA+R +E + N+YVKN ++T
Sbjct: 146 HFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLT 205
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +G ITS V+ + +GTSKGFG LYV
Sbjct: 206 QEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYV 265
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER L+ +E+M+ ER A +Y KN++D D L++ FSQ G I+S
Sbjct: 266 GRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSA 325
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------A 260
K+M T+ G SKG T E + + M G + S P++ L QR
Sbjct: 326 KVM-TEGGRSKGFGFVCFSTPEEASKAITEM---DGRMIGSK--PIYVALAQRYEDRRAY 379
Query: 261 LQVYQAPDFRHGGMIPNGFSPPPPSPLFLM 290
L RH M SPP +P FL+
Sbjct: 380 LSAQCMQRIRHQTM-----SPPLTTPQFLI 404
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
+LYV +L D+TE +L EKFS G+I SL + +D+ T + G YV +Q
Sbjct: 11 LTSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSR-TKQSLG--YAYVNFSQTIEAE 67
Query: 163 KAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTIS 204
+ + F+ ++ + + KN++ +D + FS G I
Sbjct: 68 RVLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNIL 127
Query: 205 SVKIMRTDRGISKGH 219
S K+ D G+SKG+
Sbjct: 128 SCKVAIDDDGVSKGY 142
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 63/307 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
E+ L + F +FG I+S V+ +D +G S+ F G VLYV
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +LK+ FS+ G ++S
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K +R ++L+ ++
Sbjct: 362 KVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALF 421
Query: 239 AK-QGPG 244
++ + PG
Sbjct: 422 SQIRAPG 428
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + + A K + F R R+ERA
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-RQERARDENTPTPRF 228
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ E EL++ F + G ISS +MR G S+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 146/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV ++G+SKGYGFV
Sbjct: 123 MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + +R + + F N+YVKNLD +++
Sbjct: 183 HYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVS 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E + F +FG +TS VI D G SKGFG + L+V
Sbjct: 243 LEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKKAER+ LR +E + E+ Y KN++DE+D+ L+ F GTI+S
Sbjct: 303 SRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSA 362
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 363 KVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNK 396
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + Q+F +FG++ S+ + +EG SKG+GFV + E A +A++ L
Sbjct: 231 NIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGL 290
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+L+V ++A+R +E S+ NLY+KNLDD++ +E L
Sbjct: 291 HDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLR 350
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D G+SKGFG +K LYV+ AQ+
Sbjct: 351 AEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQR 410
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 411 REVRRQQLESQI 422
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 158/308 (51%), Gaps = 63/308 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGL 245
Y + G+
Sbjct: 376 YMRHMTGM 383
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 37/233 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L ++ L FS G + S +V V+++ +S GY +V + P A
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 71 AIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A++ + V + + P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDKAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQF 170
FG I S ++ D G SKG+G A + K I R +
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG 224
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 220/492 (44%), Gaps = 114/492 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQITQLRPSPRWAAQGA 442
Query: 275 IPNGFS-------PPPPSPLF-LMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F P P P F M P S ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPTAPRPPFSTMRPASSQVTRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PSYNYPISQPRAGQAAANNLTNGNHRAAASNEN-----------LSSMLVATSPDERKDI 369
P+ +SQ + N + N + + + +SML + P E+K +
Sbjct: 503 PAVRT-VSQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQM 561
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 562 LGERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 63/307 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
E+ L + F +FG I+S V+ +D +G S+ F G VLYV
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +LK+ FS+ G ++S
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K +R ++L+ ++
Sbjct: 362 KVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALF 421
Query: 239 AK-QGPG 244
++ + PG
Sbjct: 422 SQIRAPG 428
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + + A K + F R R+ERA
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-RQERARDENTPTPRF 228
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ E EL++ F + G ISS +MR G S+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 38/278 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 118 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--------FNNLYVKNLD 112
Y T E+A AI+ + G + ++YVG I R +E S F N+YVKNLD
Sbjct: 178 HYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLD 237
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SK 149
++T++ V+ F +FG +TS VI D G S+GFG +
Sbjct: 238 PEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGR 297
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGT 202
L+V+RAQKKAER+ LR +E+ + E+ Y KN+ D++D+ L+Q F G+
Sbjct: 298 KLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGS 357
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
I+S K+MR ++G SKG + E T + M K
Sbjct: 358 ITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 395
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 219/492 (44%), Gaps = 116/492 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 86 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 145 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E F ++GK S+ + D G S+GFG K ++V
Sbjct: 205 DQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 264
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 265 GRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 324
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 325 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 383
Query: 239 AKQGPGLAST---------------IFPVHPTLYQRALQVYQAPDFRHGGMIPNG----- 278
++ G+ + P P R Y AP+ + M PN
Sbjct: 384 MQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRT--TYYAPN-QLTQMRPNPRWQQQ 440
Query: 279 ---------------FSPPPPSPLFLMAPDSVTQY-----RGAMMNGHANFPM---PLML 315
P P + + +AP++ Q GA G PM P M
Sbjct: 441 GGRGQGGFQGMPSSLRQPGPRANIRHLAPNASNQGPRGMPTGAQRVGGTGQPMGPRPAMG 500
Query: 316 SNLQK--PSYNYPI----SQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDI 369
+ P Y Y +QP+ Q A +SML A P E+K +
Sbjct: 501 MTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQPAVHVQGQEPLTASMLAAAPPQEQKQM 560
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 561 LGERLFPLIQAM 572
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 69
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 70 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 129
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 130 KVVCDENG-SKGYAFVHFETQ 149
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 158/308 (51%), Gaps = 63/308 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGL 245
Y + G+
Sbjct: 376 YMRHMTGM 383
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 37/233 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L ++ L + FS G + S +V V+++ +S GY +V + P E
Sbjct: 1 MASLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + + L+ + M P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLLRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQF 170
FG I S ++ D G SKG+G A + K I R +
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG 224
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 159/302 (52%), Gaps = 67/302 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G+SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA +IEK+ G + +++VG FI R +R +E F N+YVKN +D+T
Sbjct: 145 HFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLT 204
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
EE L E F ++G ITS V+ KD G S+GFG KVL
Sbjct: 205 EEALHEMFEKYGSITSHRVMMKD--GKSRGFGFVAFENPDAAERAVQELNAKELSDGKVL 262
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 263 YVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTIT 322
Query: 205 SVKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRI 236
S K+M D G SKG C +A+AQ K ER S+L
Sbjct: 323 SAKVM-LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLAS 381
Query: 237 MY 238
Y
Sbjct: 382 QY 383
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ ++D + FS G I S
Sbjct: 69 LDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + ++G SKG+
Sbjct: 129 KVAQDEKGQSKGY 141
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 152/276 (55%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV +EG SKGYGFV
Sbjct: 129 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T SAL AIEK+ G + +++VG F RA R++E G + N+++KN D +
Sbjct: 189 HFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLD 248
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKV-------------------------L 151
E+ L E FS++G+ITS V+ D +G KGFG L
Sbjct: 249 EKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKL 308
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
V RAQKK+ER A L+ ++E +++ER + Y KNI +E+ + L+++F+ G+I+
Sbjct: 309 SVCRAQKKSERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSIT 368
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E T+ + M +K
Sbjct: 369 SAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSK 404
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 45/197 (22%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN +D KL ++FSK+G+I S+ V+ GK KG+GFV + P++A+ A++ L
Sbjct: 237 NVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTL 296
Query: 76 QGATVERMELYVGPFIRRA-------------------DRIQEGSSFNNLYVKNLDDDMT 116
+T+E +L + + RA +R+Q N LYVKN++++MT
Sbjct: 297 NESTLEGTDLKLS--VCRAQKKSERTAELKRKYEALKQERVQRYQGVN-LYVKNIEEEMT 353
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E F+ FG ITS + D NG SKGFG +K LYV
Sbjct: 354 DDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYV 413
Query: 154 ARAQKKAERKAILRAQF 170
A AQ+K +R+A L +Q+
Sbjct: 414 ALAQRKEDRRAQLASQY 430
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ + + L + F+ FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 337 RYQGV-NLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEAT 395
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ + LYV R+ DR
Sbjct: 396 AAVTEMNSKMIGAKPLYVALAQRKEDR 422
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY+ +L D+TE +L EKFS G + S+ + +D N + G YV Q
Sbjct: 53 SMASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRD-NTSRLSLG--YAYVNFQQPADA 109
Query: 162 RKAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTI 203
+A+ FE + R ++ KN++ +D + FS G I
Sbjct: 110 ERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNI 169
Query: 204 SSVKIMRTDRGISKGH 219
S K+ + G SKG+
Sbjct: 170 LSCKVATDEEGNSKGY 185
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 149/252 (59%), Gaps = 34/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
E+ L + F +FG I+S V+ +D +G S+ F G VLYV
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +LK+ FS+ G ++S
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 207 KIMRTDRGISKG 218
K+M +G+S+G
Sbjct: 362 KVMLNPQGMSRG 373
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + + A K + F R R+ERA
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-RQERARDENTPTPRF 228
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ E EL++ F + G ISS +MR G S+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 220/483 (45%), Gaps = 103/483 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQ-------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSP 281
Y ++ PG A F P P + Q+ Q PN P
Sbjct: 384 YMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRP 443
Query: 282 PPPSPL---------FLMAPDSVTQYRGAMMN----GHANFPMPLM------LSNLQKPS 322
+ F AP + T GAM + G AN M +S +PS
Sbjct: 444 NAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQSRSMAGPAVGVSAQSRPS 503
Query: 323 -YNYPISQPRAGQAAANNLTNGNHRAA--ASNENLS-SMLVATSPDERKDILGQRLYPLV 378
Y Y + QA A +A E L+ SML A P E+K +LG+RL+PL+
Sbjct: 504 NYKYTSNMRNPPQAMAIPTPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLI 563
Query: 379 KKL 381
+ +
Sbjct: 564 QCM 566
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 149/488 (30%), Positives = 217/488 (44%), Gaps = 114/488 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +IDN L FS FG+I S K VVS E SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCK-VVSDENGSKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G ++ ++++VG F R +R E F N+Y+KN +DM
Sbjct: 135 HFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREFTNVYIKNFGEDMD 194
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
L E F FG+ S+ + D G SKGFG + +YV
Sbjct: 195 NARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYV 254
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+++++R Y KN++D +D+ L+ FS GTI+S
Sbjct: 255 GRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSA 314
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G S+G C +A+AQ K ER ++L Y
Sbjct: 315 KVM-MEGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQRKEERQAHLTNQY 373
Query: 239 AKQGPGLASTIFPV-----HPTLYQRALQVY--------------QAPDFR---HGGMIP 276
++ + + PV PT R + Q P R H G P
Sbjct: 374 MRRMANIQTFANPVLNPYHQPTSSSRYIMTTVPSSQTRTSYYPYGQVPQLRTSSHWG-PP 432
Query: 277 NGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSN------------------- 317
G PP P+ ++ P + M + A+ P+P M++
Sbjct: 433 GGRLPPFPTVSGVVRPKTPRPPFNPMRS--ASGPVPRMMTTQRVVNPPNQVFGPPRPPFI 490
Query: 318 -----LQKPSYNYPISQPRAGQAAAN-NLTNGNHRAAASNENLSSMLVATSPDERKDILG 371
+Q+ Y + P+ + N+ AAA +SML P E+K +LG
Sbjct: 491 PNLRAVQQYKYAAGVRNPKRFELPMQINIPQPAVHAAAQEVLTASMLADALPQEQKQMLG 550
Query: 372 QRLYPLVK 379
+RL+PL++
Sbjct: 551 ERLFPLIQ 558
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEAT 265
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 109 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 168
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 169 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 228
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 229 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 288
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 289 KDVRRSQLAQQIQ 301
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 206 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 264
Query: 69 LDAIEKLQGATVERMELYV 87
AI + V LYV
Sbjct: 265 TKAITEKNQQIVAGKPLYV 283
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 167/356 (46%), Gaps = 41/356 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN F+KNL IDN L FS FG+I S KV EG S GYGFV
Sbjct: 154 MWKNRDPTIRKSGAGNVFIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFV 213
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDM-TE 117
+ PE A AI K+ G + ++YVG F R +R +E F N+Y KNL M TE
Sbjct: 214 HFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTE 273
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E + E FS +G+ITS+ + D N KGF K LYV
Sbjct: 274 EKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVG 333
Query: 155 RAQKKAERKAILRAQFERMRKERAELYKNIN-------DEVDEIELKQYFSQCGTISSVK 207
RAQKKAER+A LR + E R E + Y+ +N D++DE L++ FS GT++S +
Sbjct: 334 RAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCR 393
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK-QGPGLASTIFPVHPTLYQRALQVYQ- 265
+MR D+G+S+G T E T + M K G + Q L+ +
Sbjct: 394 VMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQRI 453
Query: 266 ---APDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYR---GAMMNGHANFPMPLML 315
A R G +P P P +P+F P Q + M G A+F P L
Sbjct: 454 AAAAGGLRIPGAVPGSLYPQPGAPMFYPQPGVPPQMQLQTNMMGRGQASFINPQYL 509
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 154/273 (56%), Gaps = 37/273 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R +G N F+KNL ++IDN LH+ FS FG++ S KV + G SKG+GFV
Sbjct: 99 MFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFV 158
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ +SA +AIEKL G + ++YVG F+ R QE SS F N+YVKNL + T E
Sbjct: 159 QFDNDQSAKNAIEKLDGRLMNDKKVYVGYFV----RCQERSSPKFTNVYVKNLSESYTNE 214
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + F+ FG ITS+ I KD NG SK FG KVL+V
Sbjct: 215 DLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVG 274
Query: 155 RAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVK 207
RAQKK+ER+A L+A FE+ + +R A LY KNI+ ++E +LK+ FS+ GTI+S K
Sbjct: 275 RAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCK 334
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+M RG SKG T E + + M K
Sbjct: 335 VMSDARGRSKGVGFVAFTTPEEASKAIDEMNGK 367
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 38/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + N L Q+F+ FG I S K++ + G SK +GFV + + +SA A+EKL
Sbjct: 201 NVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKL 260
Query: 76 QGATVERME-LYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDDMTEEIL 120
G+T + L+VG ++++R E +F NLY+KN+D + EE L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
E FSEFG ITS + DA G SKG G K +YV+ AQ
Sbjct: 321 KELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQ 380
Query: 158 KKAERKAILRAQF 170
+K ERKA L+A F
Sbjct: 381 RKEERKAQLQAHF 393
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 29/221 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEK-- 74
+V +L +++ +L+ +FS+ + S +V Q +S GYG+V YS A +A+E
Sbjct: 28 YVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENLN 87
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M + P IR+ + F NL++KNL+ + + L E FS FG +
Sbjct: 88 YVPLNGKPIRIMFSHRDPLIRK-------TGFANLFIKNLETSIDNKALHETFSVFGNVL 140
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA--------------ILRAQFERMRKER 177
S ++ D+NG SKG G ++ K A K +R Q ER +
Sbjct: 141 SCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQ-ERSSPKF 199
Query: 178 AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+Y KN+++ +LKQ F+ G I+SVKIM+ + G SK
Sbjct: 200 TNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSK 240
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 400 KDVRRSQLAQQIQ 412
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 217/492 (44%), Gaps = 113/492 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 21 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 79
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 80 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 139
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 140 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 200 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 259
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 260 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 318
Query: 239 AKQGPGLASTIFPV-------HPTLY------------------QRALQVYQAPDFRHGG 273
++ + + PV P+ Y Q A +P + G
Sbjct: 319 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQG 378
Query: 274 MIPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ 319
P+ F +P PP P P ++ R A + P P +
Sbjct: 379 ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAA 438
Query: 320 KPSY-NYPISQPRAGQAAANNLTNGNHRAAASNENL---------SSMLVATSPDERKDI 369
PS P + AG N + A + +SML + P E+K +
Sbjct: 439 TPSVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQM 498
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 499 LGERLFPLIQSM 510
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 125 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D D+T
Sbjct: 185 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +FG+ITS +S+D G S+GFG ++ LYV
Sbjct: 245 EEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 305 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSA 364
Query: 207 KIMR 210
K+MR
Sbjct: 365 KVMR 368
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + +IF +FG+I S+ + EGKS+G+GFV YST ESA A++++
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEM 292
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 122 EKFSEFGKITSLVISKDA 139
E F +G ITS + +D+
Sbjct: 353 ELFGPYGTITSAKVMRDS 370
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 54 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 111
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 112 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGN 164
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 165 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 224
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRE 229
+ M+ +Y KNI+ +V E E ++ F Q G I+S + R G S+G T
Sbjct: 225 DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHES 284
Query: 230 RTSYLRIMYAKQ 241
+ + M+ K+
Sbjct: 285 AQAAVDEMHDKE 296
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 157/293 (53%), Gaps = 39/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH FS FG+I S K+ + + G SKGYGFV
Sbjct: 118 MWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRADRIQEGSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG + R+A Q + F N+YVKNLD+ +
Sbjct: 178 HYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDESVK 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E ++FG ITS ++ D G SKGFG K+LYV
Sbjct: 238 DEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK ER+ LR Q+E+ + E+ Y KN++D++D+ +L+Q FS G I+S
Sbjct: 298 ARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSA 357
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M ++ SKG + E T + M + + S P++ L QR
Sbjct: 358 KVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRM---IGSK--PIYVALAQR 405
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 400 KDVRRSQLAQQIQ 412
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 400 KDVRRSQLAQQIQ 412
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 400 KDVRRSQLAQQIQ 412
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 218/474 (45%), Gaps = 94/474 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +++ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVMMED-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQ-------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSP 281
Y ++ PG A F P P + Q+ Q PN P
Sbjct: 384 YMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRP 443
Query: 282 PPPS---------PLFLMAPDSVTQYRGAMMNGHANFPMPLM-LSNLQKPS-YNYPISQP 330
+ F P + T G M + + P+ + +S +PS Y Y +
Sbjct: 444 NAQTGNSGFATMQGPFRTTPRAPTAQAGTMRSTLSARPITAVGVSAQSRPSNYKYTSNMR 503
Query: 331 RAGQAAANNLTNGNHRAA--ASNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
QA A +A E L+ SML A P E+K +LG+RL+PL++ +
Sbjct: 504 NPPQAMAIPAPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCM 557
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFERMRKER 177
K R++ L Q + + R
Sbjct: 400 KDVRRSQLAQQIQARNQMR 418
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 222/489 (45%), Gaps = 118/489 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL ID+ LH FS FG+I S KV + G+SKG+GFV
Sbjct: 113 MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A AI+ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 173 QYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
LV+ F +G ITS VI +G S+ FG K YV R
Sbjct: 233 DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGR 292
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L + FS G I+S KI
Sbjct: 293 AQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKI 352
Query: 209 MRTDRGISKGHC--------------------------MAIAQTKRERTSYLRIMYAKQG 242
MR G+SKG +A AQ K +R + L+ +++
Sbjct: 353 MRDANGVSKGSGFVAFSTLPFIQLTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVR 412
Query: 243 PGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPP---PPSPLFLMAPDSVTQYR 299
P P+ P++ R L +Y P G + G +PP PP P F V R
Sbjct: 413 P------VPMTPSMAPR-LPMY-PPMAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMR 464
Query: 300 --GAMMNGHANFPMPLMLSNLQ------------------------------------KP 321
GA M N+ +P++ Q P
Sbjct: 465 PGGAHM---PNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPP 521
Query: 322 SYNYPISQPRAGQAA----ANNLTNGNHRAA----ASNENLSSMLVATSPDERKDILGQR 373
++N P P G A + ++ R A A L+S L +P++++ ILG+
Sbjct: 522 AHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPAPIGTLTSALANANPEQQRTILGES 581
Query: 374 LYPLVKKLK 382
LYPLV+ L+
Sbjct: 582 LYPLVELLE 590
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ + +L+++FS+ G + S +V +S GY +V ++ P A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 102 FAPLNGKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILRAQFER 172
D G SKGFG K +YV +K ER+ ++ + +F
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+++ + +L + F G I+S IM G S+
Sbjct: 220 V------FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSR 258
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA--------------NGTSKGFGSKV 150
+LYV +L+ +T+ L E FS+ G++ S+ + +D N ++
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
L A K R R A ++ KN++ +D L FS G I S K+
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 160 TDEMGQSKG 168
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 145/274 (52%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 118 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R + + F NLY+KNLD +T
Sbjct: 178 HYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVT 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F ++G +TS ++ D G SKGFG K L+V
Sbjct: 238 QDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLFV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKKAER+ LR +E+ + E+ Y KN+ D+VD+ +L+ F GTI+S
Sbjct: 298 SRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSC 357
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D+ SKG + E T + M K
Sbjct: 358 KVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNK 391
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL +++ + ++F K+G++ S+ V V +EG SKG+GFV Y E A A++ L
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ +L+V ++A+R +E S+ NLY+KNL+DD+ +E L
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D TSKGFG SK LYV+ AQ+
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 159 KAERKAILRAQFERMRKER 177
+ R+ L +Q + + R
Sbjct: 406 REVRRQQLESQIAQRNQIR 424
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV LD +TE +L E F+ G + S+ + +DA T + G YV +A+
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAV-TRRSLG--YAYVNYLNTSDGERAL 102
Query: 166 LRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSVK 207
+ + ++ + KN+++++D L F+ G + S K
Sbjct: 103 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 162
Query: 208 IMRTDRGISKGH 219
+ + G SKG+
Sbjct: 163 VATDEHGRSKGY 174
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 147/272 (54%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL TIDN LH FS FG I S KV G+SKG+GFV
Sbjct: 111 MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E A A++ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 171 QYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKE 230
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
LV+ FSE+G ITS V+ +G S+ FG K Y R
Sbjct: 231 DLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGR 290
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L++ FS G I+S K+
Sbjct: 291 AQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKV 350
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+SKG T+ E + + M K
Sbjct: 351 MRDQNGVSKGSGFVAFSTREEASQAITEMNGK 382
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L +IFS++G+I S+ V+V +GKS+ +GF+ + +P+ A+ A+E+L
Sbjct: 217 NVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEEL 276
Query: 76 QGATVERMELYVGPFIRRADR--------------IQEGSSFNNLYVKNLDDDMTEEILV 121
G + E Y G ++++R + NLY+KNLDD ++++ L
Sbjct: 277 NGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLR 336
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FGKITS + +D NG SKG G K LYVA AQ+
Sbjct: 337 ELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQR 396
Query: 159 KAERKAILRAQFERMR 174
K ERKA+L+AQF +MR
Sbjct: 397 KEERKAMLQAQFSQMR 412
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ + +L+++FS+ G + S +V + S GY +V +S P A A+E L
Sbjct: 40 YVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEMLN 99
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 100 FVPLNNKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 157
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAER-KAILRAQFER 172
D G SKGFG K +YV +K ER + +A+F
Sbjct: 158 TDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNN 217
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+++ + +L + FS+ G I+S +M G S+
Sbjct: 218 V------FVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSR 256
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG----SKVLYVARA--- 156
+LYV +L+ +T+ L E FS+ G++ S+ + +D N S G+ S + ARA
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEM 97
Query: 157 ------QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
K R R A ++ KN++ +D L FS G I S K+
Sbjct: 98 LNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVA 157
Query: 210 RTDRGISKG 218
D G SKG
Sbjct: 158 TDDMGQSKG 166
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 200/454 (44%), Gaps = 95/454 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 125 MWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G ++ E++VG I + DR+ + ++F N++VKN D T
Sbjct: 185 HYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFT 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L F +GKITSL KD+ G SKGFG + +YV
Sbjct: 245 EAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D + L++ F GTI+S
Sbjct: 305 GRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSA 364
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRI-- 236
K+M + G SKG C +A+AQ K R S L
Sbjct: 365 KVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQI 424
Query: 237 -------MYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSP-PPPSPLF 288
M G+ P P Y Q P F G NG P P P+P
Sbjct: 425 QARNQMRMQNAAAAGIPGQFMP--PMFYG------QQPGFFPGNGRNNG--PFPGPNPQM 474
Query: 289 LMA----PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGN 344
+M P Q+ A NG P+P+ +N P + + G N G
Sbjct: 475 MMPRGQMPPPQGQWPRAGPNGQ---PVPVYGMPPVYNDFNGPNGRQQRGYFPNNRNQKGG 531
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
R +L++++ + PD++K ILG+ LYP +
Sbjct: 532 RR------DLAAIIASAPPDQQKRILGEELYPKI 559
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 109/275 (39%), Gaps = 61/275 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L +++ L++IFS G + S +V KS GY +V Y E A+E+L
Sbjct: 54 YVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQLN 113
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G M P +RR + N+++KNL D+ + L + FS FG+I
Sbjct: 114 YSLIDGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPDIDNKALHDTFSAFGRIL 166
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILR---------AQFER 172
S ++ D +G SK FG A A A +R+ + A+FE
Sbjct: 167 SCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEE 226
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------HCMAI 223
M+ ++ KN + E EL F G I+S+ + G SKG H A+
Sbjct: 227 MKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAV 286
Query: 224 --------------------AQTKRERTSYLRIMY 238
AQ KRER L+ Y
Sbjct: 287 KAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQY 321
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 153/276 (55%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV ++G S+GYGFV
Sbjct: 126 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G + ++YVG F RA R++E G + N++VKN + +
Sbjct: 186 HFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLD 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + FS++G+ITS V+ DA+G KGFG L
Sbjct: 246 QEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKL 305
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
V RAQKK+ER A L+ ++E +++ER + Y KNI++E+ + L+ +F+ GTI+
Sbjct: 306 SVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTIT 365
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E T+ + M +K
Sbjct: 366 SAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSK 401
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 103/197 (52%), Gaps = 45/197 (22%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D KL ++FSK+G+I S+ V+ +GK KG+GFV Y+ P++A A++ L
Sbjct: 234 NVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDL 293
Query: 76 QGATVERMELYVGPFIRRA-------------------DRIQEGSSFNNLYVKNLDDDMT 116
T+E +L + + RA +R+Q N LYVKN+D+++T
Sbjct: 294 NEKTLEGTDLKLS--VCRAQKKSERTADLKRKYEALKQERVQRYQGVN-LYVKNIDEELT 350
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L F+ FG ITS + D NG SKGFG SK LYV
Sbjct: 351 DEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYV 410
Query: 154 ARAQKKAERKAILRAQF 170
A AQ+K +R+A L +Q+
Sbjct: 411 ALAQRKEDRRAQLASQY 427
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ + + L F+ FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 334 RYQGV-NLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEAT 392
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ + LYV R+ DR
Sbjct: 393 AAVTEMNSKMMGSKPLYVALAQRKEDR 419
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY+ +L D+TE +L EKFS G + S+ + +D N + G YV Q
Sbjct: 50 SMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRD-NTSRLSLG--YAYVNFQQPADA 106
Query: 162 RKAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTI 203
+A+ FE + R ++ KN++ +D + FS G I
Sbjct: 107 ERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNI 166
Query: 204 SSVKIMRTDRGISKGH 219
S K+ + G S+G+
Sbjct: 167 LSCKVAADEDGSSRGY 182
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 149/276 (53%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV EG SKGYGFV
Sbjct: 131 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T SA AIEK+ G + ++YVG F RA R++E G + N++VKN + +
Sbjct: 191 HFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLD 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L FS+FG+ITS V+ DA G KGFG L
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKL 310
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
V RAQKK+ER A L+ ++E +++ER + Y KNI +++++ L+ +FS GTI+
Sbjct: 311 SVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTIT 370
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E T+ + M +K
Sbjct: 371 SAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 43/196 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D KL +FSKFG+I S+ V+ +GK KG+GFV ++ ++A A+EKL
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 76 QGATVERMELYVGPFIRRADRIQEGSS------------------FNNLYVKNLDDDMTE 117
+ +E + + + RA + E S+ NLYVKN+++D+ +
Sbjct: 299 NDSILEGTDCKLS--VCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 356
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + FS FG ITS + D NG SKGFG +K LYVA
Sbjct: 357 DGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Query: 155 RAQKKAERKAILRAQF 170
AQ+K +R+A L +Q+
Sbjct: 417 LAQRKEDRRAQLASQY 432
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ +++ L FS FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 339 RYQGV-NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEAT 397
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ + + LYV R+ DR
Sbjct: 398 AAVTDMNSKMIGAKPLYVALAQRKEDR 424
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY+ +L D++E +L EKFS G + S+ + +D N + G YV Q
Sbjct: 55 SMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRD-NTSRLSLG--YAYVNFQQPADA 111
Query: 162 RKAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTI 203
+A+ FE + R ++ KN++ +D + FS G I
Sbjct: 112 ERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNI 171
Query: 204 SSVKIMRTDRGISKGH 219
S K+ D G SKG+
Sbjct: 172 LSCKVATDDEGNSKGY 187
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 14 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 193 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 252
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 253 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 311
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 312 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 371
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 372 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 431
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 432 PAVRTVAQYKYAPGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 491
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 492 GERLFPLIQAM 502
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 14 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 193 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 252
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 253 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 311
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 312 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 371
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 372 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 431
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 432 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 491
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 492 GERLFPLIQAM 502
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 21 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 79
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 80 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 139
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 140 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 200 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 259
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 260 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 318
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 319 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 378
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 379 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 438
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 439 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 498
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 499 GERLFPLIQAM 509
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 131 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 189
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 190 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 249
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 250 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 309
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 310 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 369
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 370 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 428
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 429 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 488
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 489 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 548
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 549 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 608
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 609 GERLFPLIQAM 619
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 125/271 (46%), Gaps = 59/271 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 14 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELY--------VGPFIRRA------------------ 94
+ T E+A AIEK+ G + V P RA
Sbjct: 73 HFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMW 132
Query: 95 ---DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---- 147
D S N+++KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 133 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 191
Query: 148 -------------------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDE 187
+ ++V R + + ER+A L A+ KE +Y KN ++
Sbjct: 192 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGED 247
Query: 188 VDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+D+ LK F + G SVK+M + G SKG
Sbjct: 248 MDDERLKDLFGKFGPALSVKVMTDESGKSKG 278
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 26 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 84
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 85 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 144
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 145 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 204
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 205 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 264
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 265 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 323
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 324 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 383
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 384 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 443
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 444 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 503
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 504 GERLFPLIQAM 514
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR++ G SKG T E T
Sbjct: 352 KVMRSENGKSKGFGFVCFSTPEEAT 376
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV +L+ ++E L + FS G ++S+ + +DA TS G+ YV +A RKA
Sbjct: 40 LYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYA----YVNFNDHEAGRKA 95
Query: 165 I-------LRAQFERM----------RKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
I ++ + R+ +K ++ KN++ ++D L FS G I S
Sbjct: 96 IDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 207 KIMRTDRGISKG 218
KI + G SKG
Sbjct: 156 KIATDENGKSKG 167
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 141/248 (56%), Gaps = 34/248 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 124 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D ++T
Sbjct: 184 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVT 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F +FG ITS IS+D +G S+GFG + LYV
Sbjct: 244 DEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 304 GRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSA 363
Query: 207 KIMRTDRG 214
K+MR G
Sbjct: 364 KVMRDTVG 371
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 97/239 (40%), Gaps = 83/239 (34%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F KFGDI S+ + GKS+G+GFV Y E+A A++ L
Sbjct: 232 NVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDL 291
Query: 76 QGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG +RR A R+++ S + NLYVKNL DD+ +E L
Sbjct: 292 NDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 351
Query: 122 EKFSEFGKITSLVISKDANGT--------------------------------------- 142
E FS FG ITS + +D G
Sbjct: 352 ELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKKS 411
Query: 143 -------SKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
SKGFG K LYVA AQ+K RK+ L A +
Sbjct: 412 DKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQ 470
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS G + S +V +S GY +V Y+ A+E L
Sbjct: 53 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLN 112
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 113 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNKALHDTFAAFGNIL 165
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 166 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 225
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV + E ++ F + G I+S I R D G S+G
Sbjct: 226 MKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRG 272
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PSYNY-PISQPRAGQAAANNLTNGNHRAAASNENL---------SSMLVATSPDERKDIL 370
P+ P + AG N + A + +SML + P E+K +L
Sbjct: 503 PAVRTGPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 144/472 (30%), Positives = 218/472 (46%), Gaps = 97/472 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 148 MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 206
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E F N+YVKNL DM
Sbjct: 207 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMD 266
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D+NG S+GFG ++LYV
Sbjct: 267 EQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYV 326
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER++ L+ +FE++++ER Y KN++D +++ LK+ FS G I+S
Sbjct: 327 GRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSA 386
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 387 KVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 445
Query: 239 AKQ--GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVT 296
+Q P L+S P + L + QA + G M P P P + P S
Sbjct: 446 RRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSGSMAP--MQPDPRWAVQPHGPSSTC 503
Query: 297 QYRGAMMNGHANFPMP-LMLSNLQKPSYNYPISQPRAGQAAANNLTNG-----------N 344
+++ P + L+N + S P +Q + G
Sbjct: 504 PPAASVVQPLGTMQHPRVHLNNASQASSQVPHTQRVVNIGTQTTGSGGEGCSIPGQPLLT 563
Query: 345 HRAAASNENLS-----------------SMLVATSPDERKDILGQRLYPLVK 379
HR +++ + SML A E+K ++G+RLY L++
Sbjct: 564 HRGSSAVHSAHGVQEPAVYVPGHQPLTVSMLAAAPLHEQKQMIGERLYSLIQ 615
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 83 MELYVGPFIRRADRIQEG---SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA 139
+EL PF+ + + G + ++LYV +L D+TE +L E FS G I S+ + +D
Sbjct: 50 LELLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDV 109
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY------------------ 181
T + G Y+ Q +A+ FE ++ + +
Sbjct: 110 -ATRRSLG--YAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFI 166
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KN+ + +D L FS G+I S K++ + G
Sbjct: 167 KNLENSIDNKALYDTFSTFGSILSSKVVYNEHG 199
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 98 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 156
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 157 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 216
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 217 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 276
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 277 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 336
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 337 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 395
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 396 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 447
Query: 294 SVTQYRG 300
Q G
Sbjct: 448 PRWQQGG 454
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 48 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 106
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 107 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 166
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 167 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 226
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 227 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 286
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 287 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 345
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 346 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 405
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 406 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 465
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 466 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 525
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 526 GERLFPLIQAM 536
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 60 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 118
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 119 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 178
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 179 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 238
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 239 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 298
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 299 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 357
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 358 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 409
Query: 294 SVTQYRG 300
Q G
Sbjct: 410 PRWQQGG 416
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 216/469 (46%), Gaps = 118/469 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N FVKNL ID+ L++IFS FG I S KV G+SKGYGFV
Sbjct: 109 MFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
QY T ESA AI L G +++VG +RR DR + F N+Y+KNL + +E+ L
Sbjct: 169 QYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVK---FTNVYIKNLPTEFSEDDL 225
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
++F+ FG+ITS V+ +DA+G SK F G K LYV RAQ
Sbjct: 226 RQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQ 285
Query: 158 KKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK ERKA L+ +F R R + + LY KNI+D +++ LK+ F + G ++S K+M
Sbjct: 286 KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMV 345
Query: 211 TDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAKQG 242
RG SKG + +AQ K ER + L +A++
Sbjct: 346 DARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRN 405
Query: 243 PGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAM 302
+A+ + Y QVY F H P P P+ AP +GA+
Sbjct: 406 LAMAA-------SQYAGPQQVY----FGH---------PSSPGPI---APP-----QGAV 437
Query: 303 MNGHANF-----PM-PLMLS--NLQKPSYNYPI---SQPRAGQAAANNLTN--------- 342
+F P+ P+M+ N+Q+P Y P Q A AN++ N
Sbjct: 438 FGFPQHFVPGMGPISPVMMPPHNMQRPRYPGPAPYRQQQAMIHANANHMPNARPGPYPAM 497
Query: 343 ------GNHRAAASNENLSSMLVATS---PDERKDILGQRLYPLVKKLK 382
G A +S A + P ++ ILG +LY LV++L+
Sbjct: 498 PPQAFPGAGATAWQQHAVSRTTTAVASAGPADQHQILGNKLYALVEQLE 546
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESAL 69
L + + +V +LA T+D +LH +FS+ + + +V G S GYG+V + + + A
Sbjct: 31 LGSMASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEAT 90
Query: 70 DAIEKLQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
A+E L G + M P +R++ R NL+VKNL+ ++ + L E F
Sbjct: 91 RALEALNFTPLIGKYIRVMFSNRDPSLRKSGRA-------NLFVKNLEPNIDSKNLYEIF 143
Query: 125 SEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA-----------ERKAILRAQFERM 173
S FG I S ++ D+ G SKG+G V Y +A RK + R
Sbjct: 144 SSFGAILSCKVATDSAGQSKGYGF-VQYETEESAEAAINGLNGMLANNRKMFVGLHMRRR 202
Query: 174 RKER--AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKR 228
+E +Y KN+ E E +L+Q F+ G I+S +MR G SK C K+
Sbjct: 203 DREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASK--CFGFVNFKK 258
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 218/489 (44%), Gaps = 113/489 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E F N+Y+KN +D+
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L F+EFGK S+ + D G S+GFG +VLYV
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER + Y KN++D +D+ +L++ F+ GTI+S
Sbjct: 264 GRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M TD G S+G C +A+AQ K ER + L Y
Sbjct: 324 KVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVY--QAPDFRH-GGMIPNGFSPPPPSPLFLMAPDSV 295
++ + + P PT YQ+ Y P R +PN P P F AP +
Sbjct: 383 IQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPN--LRPAPRWAF-QAPRTQ 439
Query: 296 TQYRGAMMNGHANFPMPLMLSNLQKPSYNYP----------ISQPRAGQAAANNLTNG-- 343
+ + +S +++ S P I AG AA G
Sbjct: 440 GPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGGRAAGTAVRGVS 499
Query: 344 NHRAAASNENLSSMLVATSP-------------------------------DERKDILGQ 372
++ +A N+ ++ A +P E+K +LG+
Sbjct: 500 QYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAAPLKEQKQLLGE 559
Query: 373 RLYPLVKKL 381
RLYPL++ L
Sbjct: 560 RLYPLIQIL 568
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 105 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 163
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 164 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 223
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 224 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 284 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 343
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 344 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 402
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 403 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 462
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 463 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 522
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 523 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 582
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 583 GERLFPLIQAM 593
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 42/235 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P E AL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G V M P +R+ S N+++KNLD + + L + FS F
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+G + ++V R + + ER+A
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L A+ KE +Y KN +++D+ LK F + G SVK+M + G SKG
Sbjct: 182 ELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ I +D T + G YV Q + +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD-KITRRSLG--YAYVNYQQPRDSERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 121 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 180 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 240 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 299
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 300 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 359
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 360 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 418
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 419 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 478
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 479 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 538
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 539 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 598
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 599 GERLFPLIQAM 609
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 219/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +++ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T A + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHAQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 151/284 (53%), Gaps = 44/284 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNL----------KLHQIFSKFGDIQSSKVVVSQ 50
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV +
Sbjct: 118 MWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAFGNVLSCKVATDE 177
Query: 51 EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNL 106
+G+S+GYG+V Y T E+A AI+ + G + ++YVG I R +R ++E + F NL
Sbjct: 178 QGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHFTNL 237
Query: 107 YVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------------- 147
YVKNLD ++T++ VE FS+FG +TS VI D G SKGFG
Sbjct: 238 YVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLHD 297
Query: 148 ----SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K L+V+RAQKKAER+ LR +E + E+ Y KN+ D+VD+ +L+
Sbjct: 298 TDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAE 357
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
F GTI+S K+MR D+G SKG + E T + M K
Sbjct: 358 FEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNK 401
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + ++FS+FG + S+ + +EGKSKG+GFV + E A A++ L
Sbjct: 236 NLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTL 295
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+L+V ++A+R +E S+ NLY+KNL+DD+ +E L
Sbjct: 296 HDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 355
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D GTSKGFG SK LYV+ AQ+
Sbjct: 356 AEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 415
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 416 REVRRQQLESQI 427
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 233/517 (45%), Gaps = 156/517 (30%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +D++
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLS 204
Query: 117 EEILVEKFSEFGKITSL-VISKDANGTSKGFG------------------------SKVL 151
EE L F +FGKITS V+SKD +G SKGFG K L
Sbjct: 205 EEQLRNMFEKFGKITSYKVMSKD-DGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPL 263
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKKAER+ L+ +FE ++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 264 YVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 323
Query: 205 SVKIM----RTDRGI---SKGH---C-------------------------MAIAQTKRE 229
S K+M +T+ I SKG C +A+AQ K +
Sbjct: 324 SAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKED 383
Query: 230 RTSYLRIMYAKQ--------------GPGLASTIFPVHPTLYQR---------------- 259
R ++L Y ++ PG +S P PT QR
Sbjct: 384 RKAHLTSQYMQRMANMRMHQMGHQFMPPGPSSYFVPTIPTA-QRYFTGGTQLTPIRSNPR 442
Query: 260 -ALQVYQAPDFRHG--GMIPNGFSP---PPPSPLFLMAPDSVTQYRGAMMN--GHANFPM 311
A Q P + G + N + P PP P+ AM N G N P
Sbjct: 443 WAAQTPIRPGAQGGTAAYMANSYRPSARPPNQPM-------------AMRNNIGLGNVPR 489
Query: 312 PLMLSNLQKPSYNYPISQPRAGQAA-------------ANNLTN-----GNHRAA----- 348
P ++ Q P+ +P AGQ +N+ N G A
Sbjct: 490 P--ITGQQPPNMQ---GRPLAGQQVVVATGSRAATFKYTSNMRNPPQAMGTMPATPVQQA 544
Query: 349 ---ASNENLSSMLVATS-PDERKDILGQRLYPLVKKL 381
E L++ ++A + P E+K +LG+RL+PL++++
Sbjct: 545 VHIQGQEPLTATMLAAAQPQEQKQMLGERLFPLIQRM 581
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L S I L FS G + S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD + + + + FS F
Sbjct: 70 DTMNFDLIRGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDRSIDNKAMYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQFER 172
G I S +++D NGTSKG+G A K+ K I R + E+
Sbjct: 123 GNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 173 MRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+A+L+ KN +++ E +L+ F + G I+S K+M D G SKG
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKG 233
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L +KFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ +R + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDENGTSKGY 141
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 213/482 (44%), Gaps = 116/482 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PSY-NYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVK 379
P+ + QP LT +SML + P E+K +LG+RL+PL++
Sbjct: 503 PAVRTVTMQQPAVHVQGQEPLT-------------ASMLASAPPQEQKQMLGERLFPLIQ 549
Query: 380 KL 381
+
Sbjct: 550 AM 551
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 166/293 (56%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +A AIE++ GA ++ L+VGPF R +R E + F N+Y+KN DDM
Sbjct: 143 HFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GKI S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE++++ER +LY KN+++ +DE +L++ FS G++S V
Sbjct: 263 GRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M + G SKG + E T + M G L S ++ L QR
Sbjct: 323 KVM-EEEGRSKGFGLICFSCPEEAT---KAMAEMNGQVLGSK--AINIALAQR 369
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L KF+ G + S+ I +D S G+ L +A AQK +
Sbjct: 11 SLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G S+G+ Q++
Sbjct: 131 SDDKG-SRGYAFVHFQSQ 147
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 149/276 (53%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV EG SKGYGFV
Sbjct: 14 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFV 73
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T SA AIEK+ G + ++YVG F RA R++E G + N++VKN + +
Sbjct: 74 HFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLD 133
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L FS+FG+ITS V+ DA G KGFG L
Sbjct: 134 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKL 193
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
V RAQKK+ER A L+ ++E +++ER + Y KNI +++++ L+ +FS GTI+
Sbjct: 194 SVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTIT 253
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E T+ + M +K
Sbjct: 254 SAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 289
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 43/196 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D KL +FSKFG+I S+ V+ +GK KG+GFV ++ ++A A+EKL
Sbjct: 122 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 181
Query: 76 QGATVERMELYVGPFIRRADRIQEGSS------------------FNNLYVKNLDDDMTE 117
+ +E + + + RA + E S+ NLYVKN+++D+ +
Sbjct: 182 NDSILEGTDCKLS--VCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 239
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + FS FG ITS + D NG SKGFG +K LYVA
Sbjct: 240 DGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 299
Query: 155 RAQKKAERKAILRAQF 170
AQ+K +R+A L +Q+
Sbjct: 300 LAQRKEDRRAQLASQY 315
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ +++ L FS FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 222 RYQGV-NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEAT 280
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ + + LYV R+ DR
Sbjct: 281 AAVTDMNSKMIGAKPLYVALAQRKEDR 307
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K+++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 153/295 (51%), Gaps = 41/295 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 92 MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T ESA AIEK+ G +E ++YVG F R R++E F N+Y+KN D++
Sbjct: 152 HFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELD 211
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + F +FGKITS + DA+G SKGFG + L
Sbjct: 212 KEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKL 271
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER A L+ ++E+ + ER + Y KN++D V++ LKQ F G I+
Sbjct: 272 YVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKIT 331
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
S K+M D G SKG + E T + M K P++ L QR
Sbjct: 332 SAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKM-----MCTKPLYVALAQR 381
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 104/209 (49%), Gaps = 48/209 (22%)
Query: 9 ARLSGIG-------NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
ARL +G N ++KN A +D L ++F KFG I S+ V+V +GKSKG+GFV
Sbjct: 186 ARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVA 245
Query: 62 YSTPESALDAIEKLQGATVERME--LYV----------GPFIRR-----ADRIQEGSSFN 104
+ PE A A+ ++ + E LYV RR +R+Q N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----------------- 147
LYVKNLDD + ++IL + F +GKITS + D NG SKGFG
Sbjct: 306 -LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEM 364
Query: 148 ------SKVLYVARAQKKAERKAILRAQF 170
+K LYVA AQ+K +RKA L +Q+
Sbjct: 365 NGKMMCTKPLYVALAQRKEDRKAQLASQY 393
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 39/266 (14%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L + FS G + S +V +S GY +V + P E AL
Sbjct: 17 MASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERAL 76
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + + G + M P +RR S N+++KNLD + + + + FS F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRR-------SGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S ++ D SKG+G K +YV + Q + R
Sbjct: 130 GNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMAR-- 187
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
LR E R+ KN DE+D+ L++ F + G I+S +M G SKG
Sbjct: 188 -LREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAF 246
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIF 250
+ + + M+ + PG ++
Sbjct: 247 ENPEDAEKAVTEMHEYELPGTERKLY 272
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F + +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E L + FS+FGK S+ + +D +G SKGF G KV++V
Sbjct: 204 DESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 252 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 310
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 311 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 370
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 371 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 430
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 431 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 490
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 491 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 549
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 550 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 609
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 610 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 669
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 670 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 729
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 730 GERLFPLIQAM 740
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 176/345 (51%), Gaps = 68/345 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSP 281
++ G+ + P + L +Q A Y P G P ++P
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVPAVPQVGGRPPYYTP 425
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 144/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG I S + KDA+G KGFG + LYV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEAT 265
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + +F +FG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 109 NLYVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEAL 168
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 169 NESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 228
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 229 EEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 288
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 289 KDVRRSQLAQQIQ 301
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 206 AKYQGV-NLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 264
Query: 69 LDAIEKLQGATVERMELYV 87
AI + V LYV
Sbjct: 265 TKAITEKNQQIVAGKPLYV 283
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 147/272 (54%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL ID+ LH FS FG+I S KV + G+SKG+GFV
Sbjct: 113 MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A AI+ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 173 QYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
LV+ F +G ITS VI +G S+ FG K YV R
Sbjct: 233 DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGR 292
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L + FS G I+S KI
Sbjct: 293 AQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKI 352
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+SKG T+ E + L M K
Sbjct: 353 MRDANGVSKGSGFVAFSTREEASQALTEMNGK 384
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L +IF +G+I S+ ++V +GKS+ +GF+ + +P+ A A+E+L
Sbjct: 219 NVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R I+ F NLY+KNLDD + ++ L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS +GKITS I +DANG SKG G K LYVA AQ+
Sbjct: 339 ELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 398
Query: 159 KAERKAILRAQFERMR 174
K +RK +L+AQF ++R
Sbjct: 399 KEDRKVMLQAQFSQVR 414
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ + +L+++FS+ G + S +V +S GY +V ++ P A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 102 FAPLNGKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILRAQFER 172
D G SKGFG K +YV +K ER+ ++ + +F
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+++ + +L + F G I+S IM G S+
Sbjct: 220 V------FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSR 258
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 147/272 (54%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG N F+KNL ID+ LH FS FG+I S KV + G+SKG+GFV
Sbjct: 113 MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFV 172
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
QY E+A AI+ L G + +YVGPF+R+ +R + + FNN++VKNL + T+E
Sbjct: 173 QYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE 232
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
LV+ F +G ITS VI +G S+ FG K YV R
Sbjct: 233 DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGR 292
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ K+ A+ Y KN++D + + +L + FS G I+S KI
Sbjct: 293 AQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKI 352
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+SKG T+ E + L M K
Sbjct: 353 MRDANGVSKGSGFVAFSTREEASQALTEMNGK 384
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L +IF +G+I S+ ++V +GKS+ +GF+ + +P+ A A+E+L
Sbjct: 219 NVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R I+ F NLY+KNLDD + ++ L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS +GKITS I +DANG SKG G K LYVA AQ+
Sbjct: 339 ELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 398
Query: 159 KAERKAILRAQFERMR 174
K +RKA+L+AQF ++R
Sbjct: 399 KEDRKAMLQAQFSQVR 414
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L +++ + +L+++FS+ G + S +V +S GY +V ++ P A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A + + V R + GS+ N+++KNLD + + L + FS FG I S ++
Sbjct: 102 FAPLNGKPIRVMYSNRDPSSRRSGSA--NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILRAQFER 172
D G SKGFG K +YV +K ER+ ++ + +F
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN+++ + +L + F G I+S IM G S+
Sbjct: 220 V------FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSR 258
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 147/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G SKGYGFV
Sbjct: 121 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFV 180
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I R +R I E + + N+YVKNLD ++
Sbjct: 181 HYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQYTNIYVKNLDPELG 240
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F +FG ITS +SKD G S+GFG + LYV
Sbjct: 241 QEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYV 300
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E ++E+ Y KN+ D++D+ +L+ F GTI+S
Sbjct: 301 ARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSC 360
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++ SKG + E T + M K
Sbjct: 361 KVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNK 394
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + ++F KFG+I S+ + +EGKS+G+GFV + + E A A+E L
Sbjct: 229 NIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETL 288
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNN-------------LYVKNLDDDMTEEILV 121
+ +LYV ++++R E S+ N LY+KNL+DD+ +E L
Sbjct: 289 HDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLR 348
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D TSKGFG SK LYV+ AQ+
Sbjct: 349 AEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQR 408
Query: 159 KAERKAILRAQF 170
+ R+ L Q
Sbjct: 409 REVRRQQLETQI 420
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 222/487 (45%), Gaps = 109/487 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FG TS+ + D +G +GFG ++++V
Sbjct: 204 DEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS G+I+S
Sbjct: 264 GRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLITQY 382
Query: 239 AKQG-------------------PGLASTIFP-------VHPTLYQRALQVYQAPDF--- 269
++ G T P +PT Q A Q+ P +
Sbjct: 383 MQRVANARAAANPVMNPYQPAPPSGFIMTAIPQAQSRSAYYPTAGQMA-QLRPGPRWTTQ 441
Query: 270 ----RHGGMIPNGFSPPPPSPLFL-------MAPDSVTQYRGAMMNGHANFPMPLMLSNL 318
+H +P PP P P P + R A + P+ +++
Sbjct: 442 SVRPQHFQNMPGVMRPPRPRPQNFSTVRASSQVPPMMNTQRVAAQSSGPRHPVATAATHV 501
Query: 319 Q-KPSYNYP--ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSP-DERKDILGQRL 374
+ P Y Y + P+ A +T E L++ ++A +P E+K +LG+RL
Sbjct: 502 RGGPQYKYSTGVRNPQQHVATQPQVTLQPAVHIQGQEPLTASMLAAAPLQEQKQMLGERL 561
Query: 375 YPLVKKL 381
+PL++ +
Sbjct: 562 FPLIQNM 568
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G S+G+
Sbjct: 129 KVVCDENG-SRGY 140
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 167/320 (52%), Gaps = 66/320 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQ 258
++ G+ + P + L Q
Sbjct: 383 MQRVAGMRA--LPANAILNQ 400
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 14 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 193 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 252
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L +
Sbjct: 253 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQH 311
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 312 MQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 371
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 372 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 431
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 432 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 491
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 492 GERLFPLIQAM 502
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 168/320 (52%), Gaps = 66/320 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQ 258
++ G+ + P + L Q
Sbjct: 383 MQRVAGMRA--LPANAILNQ 400
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 149/492 (30%), Positives = 220/492 (44%), Gaps = 116/492 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L + FS++G S+ + D NG S+GFG K++YV
Sbjct: 204 DDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G+
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWTTQGV 442
Query: 275 IPNGF---------SPPPPSPLFLMAPDS-----------VTQYRGAMMNGHANFPMPLM 314
P F S P P M P S TQ G + A
Sbjct: 443 RPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQRVATQTMGPRPSTAAAAASAPP 502
Query: 315 LSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA----SNENLSSMLVATS-PDERKDI 369
+ + P Y Y S R Q N + A E L++ ++A + P E+K +
Sbjct: 503 VRGV--PQYKYAPSV-RNPQQHMNTQPQVTMQQPAVHVQGQEPLTASMLAAAPPQEQKQM 559
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 560 LGERLFPLIQNM 571
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 20 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 78
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 79 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 139 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 199 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 258
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L +
Sbjct: 259 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQH 317
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 318 MQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 377
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 378 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 437
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 438 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 497
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 498 GERLFPLIQAM 508
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 219/490 (44%), Gaps = 115/490 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E F N+Y+KN +D+
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L F+EFGK S+ + D G S+GFG +VLYV
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER + Y KN++D +D+ +L++ F+ GTI+S
Sbjct: 264 GRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M TD G S+G C +A+AQ K ER + L Y
Sbjct: 324 KVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVY--QAPDFRH-GGMIPNGFSPPPPSPLFL-MAPDS 294
++ + + P PT YQ+ Y P R +PN P+P + AP +
Sbjct: 383 IQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPN----LRPAPRWASQAPRT 438
Query: 295 VTQYRGAMMNGHANFPMPLMLSNLQKPSYNYP----------ISQPRAGQAAANNLTNG- 343
+ + +S +++ S P I AG AA G
Sbjct: 439 QGPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGGRAAGTAVRGV 498
Query: 344 -NHRAAASNENLSSMLVATSP-------------------------------DERKDILG 371
++ +A N+ ++ A +P E+K +LG
Sbjct: 499 SQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAAPLKEQKQLLG 558
Query: 372 QRLYPLVKKL 381
+RLYPL++ L
Sbjct: 559 ERLYPLIQIL 568
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 149/272 (54%), Gaps = 36/272 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +D +
Sbjct: 136 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E+L + F ++G+ITS + +G+S+GFG K LY
Sbjct: 196 DEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 256 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 315
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M D G SKG + E T + M
Sbjct: 316 AKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 346
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 40/203 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L +F K+G I S KV+ ++G S+G+GFV + P++A A +L
Sbjct: 184 NVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLEL 243
Query: 76 QGAT-VERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G VE LYVG ++A+R +E F NLYVKNLDD + +E L
Sbjct: 244 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 303
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS + + +G SKGFG +K LYVA AQ
Sbjct: 304 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 362
Query: 158 KKAERKAILRAQF-ERMRKERAE 179
+K +RKA L +Q+ +RM R +
Sbjct: 363 RKEDRKAHLTSQYMQRMASMRMQ 385
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + F+ FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 283 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEAT 340
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 341 KAVTEMNGRIVGTKPLYVALAQRKEDR 367
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPSDAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 60 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 120 KVAQDENGASKGY 132
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 171/313 (54%), Gaps = 45/313 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 183 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFV 241
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E + F N+YVKN DDM
Sbjct: 242 HFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMD 301
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D+ G SKGFG ++L+V
Sbjct: 302 DERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFV 361
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+A L+ FE++++ER +LY KN++D +D+ +L + FS G+IS V
Sbjct: 362 GRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRV 421
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---V 263
KIMR + G SKG + + E T + M G L S P++ L QR +
Sbjct: 422 KIMREE-GRSKGFGLICFSSPEEAT---KAMAEMNGRILGSK--PLYIALAQRPXERKNF 475
Query: 264 YQAPDFRHG-GMI 275
P F G GMI
Sbjct: 476 LHQPVFAAGLGMI 488
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 110 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 169
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 170 MNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 229
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G S+G+ Q +
Sbjct: 230 SDDQG-SRGYAFVHFQNQ 246
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 218/489 (44%), Gaps = 126/489 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGL------ASTIFPVHP------TLYQRALQVYQAPDFRHGGMIPNG 278
++ GP L AS P P Y + + AP + P+
Sbjct: 383 MQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQTAYYASSSPMQPAPRWTAQPPRPSS 442
Query: 279 FSPP------PPSPL-------------FLMAPDSV----------TQYRGAMMNGHANF 309
PP PP+ L P +V TQ GA G+
Sbjct: 443 TYPPAASMIRPPAMLRRPPAQVSGVRQASTQVPPTVPHTQRVANIGTQTTGASGAGYPAP 502
Query: 310 PMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDI 369
PL+ +YN+ + +P LT +SML A E+K +
Sbjct: 503 SGPLLTHKYSSATYNHGVQEPAVRIPGQEPLT-------------ASMLAAAPLHEQKQM 549
Query: 370 LGQRLYPLV 378
+G+RLYPL+
Sbjct: 550 IGERLYPLI 558
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE +R + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K++ + G S+G
Sbjct: 124 NILSCKVVCDNHG-SRG 139
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 78/383 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLS 316
Q +G G P L S
Sbjct: 435 PRWQ-QGGRPQGFQGMPSALRQS 456
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 213/478 (44%), Gaps = 127/478 (26%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAI 72
G+GN FVKNL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T +SA +AI
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 73 EKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
EKL G + +++VGPF+R+ +R + F N+YVKNL + T++ L F ++G I
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
+S V+ +D +G S+ FG K YV +AQKK+ER+ L
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Query: 168 AQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
++E+ + LY KN++D V + +L++ F++ GTI+S K+MR G SKG
Sbjct: 312 RRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSG 371
Query: 221 ----------------------------MAIAQTKRERTSYLRIMYAKQ----------- 241
+A+AQ K ER + L+ +++
Sbjct: 372 FVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPR 431
Query: 242 -------GPGLASTIF---------PVHPTL-YQRALQVYQAPDFRHGGMIPNGFSPPPP 284
PGL IF P P YQ L P F G M+ G P P
Sbjct: 432 MPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRP 491
Query: 285 S---------------PLFLMAPDSVTQYRGAMM-NGHANFPMPLMLSNLQKPSYN---Y 325
P+ M P + + RG +G N P M + +Y+
Sbjct: 492 GGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVM 551
Query: 326 PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
P SQP AGQ L++ L +P +++ +LG+ LYPLV +++
Sbjct: 552 PYSQPMSAGQ-------------------LATSLANATPAQQRTLLGESLYPLVDQIE 590
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L+ F++ + S +V + S GYG+V YS + A A++KL
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 77 GATVERMELYVGPFIR----RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+ + G IR D S NL+VKNLD + + L E FS G I S
Sbjct: 109 YSYLN------GKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE---- 179
++ D G S+G+G + K A K I F +RKE E
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPF--LRKEERESAAD 220
Query: 180 -------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ + ELK F Q G+ISS +MR G S+
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSR 265
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
+ +LYV +LD ++T+ L + F+E ++ S+ + +D A TS G+G YV +
Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYG----YVNYSNTDD 99
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
KA+ + + + + + KN++ VD L + FS CGT
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 203 ISSVKIMRTDRGISKGH 219
I S K+ G S+G+
Sbjct: 160 IVSCKVATDHMGQSRGY 176
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 183/367 (49%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 141/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH FS+FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR ++E ++F N+Y+KN+D+ ++
Sbjct: 195 HYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVS 254
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +G++ S I++D NG S+GFG K LYV
Sbjct: 255 DEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYV 314
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 315 GRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGTITSA 374
Query: 207 KIMR 210
K+MR
Sbjct: 375 KVMR 378
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ ++ + + ++F +G++ S+ + + GKS+G+GFV +++ ESA A+E+L
Sbjct: 243 NVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEEL 302
Query: 76 QGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG +RR A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 303 NDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 362
Query: 122 EKFSEFGKITSLVISKDA 139
E FS +G ITS + +D+
Sbjct: 363 ELFSSYGTITSAKVMRDS 380
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 39/244 (15%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGF 59
++P++ A+ S + +V L ++ L ++FS G + S +V V++ +S GY +
Sbjct: 51 ASPSTAAQHSA--SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAY 106
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y+ A+E L +G M P +R+ + N+++KNLD
Sbjct: 107 VNYNNTADGERALEDLNYTSIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDAA 159
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKA 164
+ + L + FS+FG I S +++D G SKG+G A A +A ++K
Sbjct: 160 IDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKV 219
Query: 165 IL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
+ +++ E M+ +Y KNI++ V + E + F G + S I R + G
Sbjct: 220 FVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENG 279
Query: 215 ISKG 218
S+G
Sbjct: 280 KSRG 283
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 165/297 (55%), Gaps = 41/297 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E + F N+Y+KN DDM
Sbjct: 143 HFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS++GK S+ + D+ G SKGFG ++L+V
Sbjct: 203 DKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE+ ++ER +LY KN++D +D+ +L++ FS G+IS V
Sbjct: 263 GRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQV 263
K+M+ + G SKG + + E T R M G L S P++ L Q QV
Sbjct: 323 KVMK-EEGRSKGFGLICFSSPEEAT---RAMTEMNGRILGSK--PLNIALAQSLQQV 373
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE++L +KFS G + S+ I +D T + G YV Q +KA
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLV-TRRSLG--YAYVNFLQLADAQKA 67
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + L KN++ +D L ++FS G I S
Sbjct: 68 LDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS 127
Query: 207 KIMRTDRGISKGH 219
K+M D+G S+G+
Sbjct: 128 KVMSDDQG-SRGY 139
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 166/334 (49%), Gaps = 41/334 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG+GN F+KNL TID LH FS FG I S KV G SKGYGFV
Sbjct: 100 MWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFV 159
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ +A AI+ + +E +YV PF +RADR + + + N++VKNL D+ ++ L
Sbjct: 160 HFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPADIGDDEL 219
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
+ +E G+ITS V+ KD G SKGFG K LY RAQ
Sbjct: 220 GKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQ 279
Query: 158 KKAERKAILRAQFERMRKERAELYKNIN--------DEVDEIELKQYFSQCGTISSVKIM 209
KK ER+A+LR + E ++ER Y+++N +EVD+ L++ F+ GTI+S K+M
Sbjct: 280 KKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVM 339
Query: 210 RTDRGISKGHCMAIAQTKRERTS-YLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPD 268
+ G SKG + E T + M K G + +RA Q+
Sbjct: 340 KDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRATQLEANMQ 399
Query: 269 FRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAM 302
R G G PP+P+ M+P Y GAM
Sbjct: 400 ARMG----MGAMSRPPNPMAGMSP-----YPGAM 424
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 38/273 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++VG FI R +R +E F N+YVKN +D +
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFS 204
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
+++L E F ++G+ITS V+SKD +G SKGFG K L
Sbjct: 205 DDLLREMFEKYGRITSHKVMSKD-DGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPL 263
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
+V RAQKKAER+ L+ +FE+++ ER Y KNI+D +D+ L++ F+ GTI+
Sbjct: 264 FVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTPFGTIT 323
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
S K+M D G SKG + E T + M
Sbjct: 324 SAKVMLED-GRSKGFGFVCFSSAEEATKAVTEM 355
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 39/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F K+G I S KV+ +GKSKG+GFV + PE+A A+ L
Sbjct: 193 NVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASL 252
Query: 76 QG-ATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G VE L+VG ++A+R QE F NLYVKN+DD++ +E L
Sbjct: 253 NGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERL 312
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS + + +G SKGFG SK LYVA AQ
Sbjct: 313 RKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQ 371
Query: 158 KKAERKAILRAQF 170
+K +RKA L +Q+
Sbjct: 372 RKEDRKAHLASQY 384
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N +VKN+ ID+ +L + F+ FG I S+KV++ ++G+SKG+GFV +S+ E A
Sbjct: 291 SRYQGV-NLYVKNIDDNIDDERLRKEFTPFGTITSAKVML-EDGRSKGFGFVCFSSAEEA 348
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 349 TKAVTEMNGRIVGSKPLYVALAQRKEDR 376
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMI-TKRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ ++ ++ + + KN++ +D + FS G I S
Sbjct: 69 LDTMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDESGTSKGY 141
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 213/478 (44%), Gaps = 127/478 (26%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAI 72
G+GN FVKNL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T +SA +AI
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 73 EKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
EKL G + +++VGPF+R+ +R + F N+YVKNL + T++ L F ++G I
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
+S V+ +D +G S+ FG K YV +AQKK+ER+ L
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Query: 168 AQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
++E+ + LY KN++D V + +L++ F++ GTI+S K+MR G SKG
Sbjct: 312 RRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSG 371
Query: 221 ----------------------------MAIAQTKRERTSYLRIMYAKQ----------- 241
+A+AQ K ER + L+ +++
Sbjct: 372 FVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPR 431
Query: 242 -------GPGLASTIF---------PVHPTL-YQRALQVYQAPDFRHGGMIPNGFSPPPP 284
PGL IF P P YQ L P F G M+ G P P
Sbjct: 432 MPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRP 491
Query: 285 S---------------PLFLMAPDSVTQYRGAMM-NGHANFPMPLMLSNLQKPSYN---Y 325
P+ M P + + RG +G N P M + +Y+
Sbjct: 492 GGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVM 551
Query: 326 PISQP-RAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
P SQP AGQ L++ L +P +++ +LG+ LYPLV +++
Sbjct: 552 PYSQPMSAGQ-------------------LATSLANATPAQQRTLLGESLYPLVDQIE 590
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L+ F++ + S +V + S GYG+V YS + A A++KL
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 77 GATVERMELYVGPFIR----RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+ + G IR D S NL+VKNLD + + L E FS G I S
Sbjct: 109 YSYLN------GKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE---- 179
++ D G S+G+G + K A K I F +RKE E
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPF--LRKEERESAAD 220
Query: 180 -------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ + ELK F Q G+ISS +MR G S+
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSR 265
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
+ +LYV +LD ++T+ L + F+E ++ S+ + +D A TS G+G YV +
Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYG----YVNYSNTDD 99
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
KA+ + + + + + KN++ VD L + FS CGT
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 203 ISSVKIMRTDRGISKGH 219
I S K+ G S+G+
Sbjct: 160 IVSCKVATDHMGQSRGY 176
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 187/389 (48%), Gaps = 97/389 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE L + F+++G S+ + D +G S+GFG K +YV
Sbjct: 204 EEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMA-PDSVTQ 297
QR V P+ + N + P PPS F+ A P + Q
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYFMTAIPQA--Q 417
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPSYNYP 326
RGA +P ++ L +PS +P
Sbjct: 418 NRGAY------YPAAGQMAQL-RPSPRWP 439
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D D T
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE + F +FG+ITS +++DA +G S+GFG + LY
Sbjct: 249 EEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS GTI+S
Sbjct: 309 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITS 368
Query: 206 VKIMR 210
K+MR
Sbjct: 369 AKVMR 373
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + +F KFG+I S+ + E GKS+G+GFV +++ ++A A+E
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G ITS + +D
Sbjct: 357 RELFSSYGTITSAKVMRD 374
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 165/294 (56%), Gaps = 41/294 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GYGFV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ L+VGPF R DR E S F N+Y+KN D+M
Sbjct: 143 HFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS +GKI S+ + D++G SKGFG + ++V
Sbjct: 203 DEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE+ ++ER+ ++Y KN+++ +DE +L++ FS G+I V
Sbjct: 263 GRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA 260
K+M+ + G S+G + + E R M G L S PV+ L QRA
Sbjct: 323 KVMQ-EEGRSRGFGLICFSSPEEAA---RAMAEMNGRLLGSK--PVNIALAQRA 370
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE +L KFS G + S+ I +D S G+ L+VA AQ+ +
Sbjct: 11 SLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ Q R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKVM 130
Query: 210 RTDRGISKGH 219
D+G S+G+
Sbjct: 131 CDDQG-SRGY 139
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 216/491 (43%), Gaps = 119/491 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L + F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQ-------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSP 281
Y ++ PG A F P P + Q+ Q PN P
Sbjct: 384 YMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRP 443
Query: 282 PPPSPL---------FLMAPDSVTQYRGAMMN----GHANFPMPLM-------------- 314
+ F AP + T GAM + G AN M
Sbjct: 444 NAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQNRSMAGPAVGVTAQSRPS 503
Query: 315 ----LSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDIL 370
SN++ P I P Q A + G A SML A P E+K +L
Sbjct: 504 NYKYTSNMRNPPQAMAIPAPTPVQQAVH--IQGQEPLTA------SMLAAAPPQEQKQML 555
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 556 GERLFPLIQCM 566
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 183/367 (49%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D D T
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE + F +FG+ITS +++DA +G S+GFG + LY
Sbjct: 249 EEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS GTI+S
Sbjct: 309 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITS 368
Query: 206 VKIMR 210
K+MR
Sbjct: 369 AKVMR 373
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + +F KFG+I S+ + E GKS+G+GFV +++ ++A A+E
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G ITS + +D
Sbjct: 357 RELFSSYGTITSAKVMRD 374
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 78/383 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLS 316
Q +G G P L S
Sbjct: 435 PRWQ-QGGRPQGFQGMPSALRQS 456
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ L++ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D +G SKGFG + +YV
Sbjct: 204 DEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVH----------------PTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ P + G+
Sbjct: 383 MQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPGPRWATQGV 442
Query: 275 -------IPNGFSP--PPPSPLFLMAPDSVTQYRGAMMNGHANFPM------PLMLSNLQ 319
+PN P P P PL + + T + M P P S
Sbjct: 443 RPQHFQNMPNAMRPTAPRPQPLNTIRAAATTNTQVPRMMASQRIPTQAVNQRPANASAAA 502
Query: 320 K-----PSYNYPISQPRAGQAAANNLTNGNHRAAA---SNENLS-SMLVATSPDERKDIL 370
P Y Y Q A+ + A E L+ SML A P E+K +L
Sbjct: 503 APVRAMPQYKYAAGVRNTQQHMASQPQVTMQQPAVHVQGQEPLTASMLAAAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQNM 573
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D D T
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE + F +FG+ITS +++DA +G S+GFG + LY
Sbjct: 249 EEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS GTI+S
Sbjct: 309 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITS 368
Query: 206 VKIMR 210
K+MR
Sbjct: 369 AKVMR 373
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + +F KFG+I S+ + E GKS+G+GFV +++ ++A A+E
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G ITS + +D
Sbjct: 357 RELFSSYGTITSAKVMRD 374
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 145/271 (53%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 141 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG + + DR ++E +++ N+YVKN+D T
Sbjct: 201 HYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYT 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ E F+ FGKITS+ + KDA G SKGFG + +YV
Sbjct: 261 EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYV 320
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN+++++D +L++ F GTI+S
Sbjct: 321 GRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSS 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M D G SKG T E T + M
Sbjct: 381 KVMVDDAGKSKGFGFVCFSTPEEATKAITEM 411
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 114/276 (41%), Gaps = 63/276 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 70 YVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSK--KSLGYAYVNYHKLEDGEKAIEE 127
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L VE + + D S N+++KNL + + L + FS FGKI S+
Sbjct: 128 LNYTPVEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + +YV + K +R++ L E
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL----E 241
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------HCMA 222
M+ +Y KNI+ E E ++ F+ G I+S+ + + G SKG H A
Sbjct: 242 EMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAA 301
Query: 223 I--------------------AQTKRERTSYLRIMY 238
AQ KRERT L+ Y
Sbjct: 302 AKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQY 337
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 168/320 (52%), Gaps = 66/320 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D +G SKGFG KV++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQ 258
++ G+ + P + L Q
Sbjct: 383 MQRVAGMRA--LPANAILNQ 400
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 214/491 (43%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVH----------------PTLYQRAL--------QVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGFS-------PPPPSPLF-LMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P+ F P P P F M P S R AN M
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAAT 502
Query: 321 ------PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 147/496 (29%), Positives = 223/496 (44%), Gaps = 120/496 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQ-------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSP 281
Y ++ PG A F P P + Q+ Q PN P
Sbjct: 384 YMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRP 443
Query: 282 PPPSPL---------FLMAPDSVTQYRGAMMNGHANFPM----PLMLSNLQKPSYNYPIS 328
+ F AP + T G M N + P+ + +N+Q N ++
Sbjct: 444 NAQTGSSGFATMQGPFRAAPRAPTAQAGTMRNTLSARPITGQQAVGGANMQ----NRSMA 499
Query: 329 QPRAGQAAANNLTNGNHRAAASN----------------------ENLSS-MLVATSPDE 365
P G +A + +N + + N E L++ ML A P E
Sbjct: 500 GPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVHIQGQEPLTASMLAAAPPQE 559
Query: 366 RKDILGQRLYPLVKKL 381
+K +LG+RL+PL++ +
Sbjct: 560 QKQMLGERLFPLIQCM 575
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 160/294 (54%), Gaps = 42/294 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FGDI S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
++T E+A +IEK+ G + ++YVG F+ R +R + F N++VKN D++
Sbjct: 144 HFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELD 203
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F +GKI S V+ D +G +KGFG ++LY
Sbjct: 204 DEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILY 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+A LR +FE M+ ERA Y KN++D +D+ L++ F GTI+S
Sbjct: 264 VGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITS 323
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M ++ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 AKVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 371
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L +D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/458 (30%), Positives = 219/458 (47%), Gaps = 91/458 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N FVKNL +ID+ L+++FS FG I S KV G+SKGYGFV
Sbjct: 111 MFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFV 170
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
QY T ESA DAI +L G E++VG +RR +R F N+Y+KNL + +++ L
Sbjct: 171 QYETEESAQDAINRLNGMLANDREMFVGLHMRRRNR---EVKFTNVYIKNLPTEFSDDDL 227
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG+ITS V+ +D NG SK FG K LYV RAQ
Sbjct: 228 RQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQ 287
Query: 158 KKAERKAILRAQFERMRKERA-------ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
KKAER+A L+ +F++ +++ LY KNI+D +++ LK F + G ++S K+M
Sbjct: 288 KKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVM 347
Query: 210 RTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAKQ 241
+G SKG + +AQ K ER + L +A++
Sbjct: 348 VDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQR 407
Query: 242 GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPP--PPSPLFLMAPDSVTQYR 299
+A++ + +Y Q P P F P P SP+ M P ++ + R
Sbjct: 408 NLAMAASPYAGPQQVYFGHPAPGQIPPQAAVFGFPQHFVPAMGPVSPV--MMPHNMQRSR 465
Query: 300 ---------------GAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGN 344
AM++ +AN + M + YP P+ +A + +
Sbjct: 466 YPRQRTGGPAAYRQQQAMIHANANHNIRYMPNARHGA---YPAMLPQGFPSA---MVSQQ 519
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
H ++ +++ + + P +++ ILG +LY LV++L+
Sbjct: 520 HDGSS----ITTAVASAEPADQQQILGNKLYALVEQLE 553
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 38/232 (16%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPES 67
L I + +V +LA ++D +LH +FS+ + S +V +VS G S GYG+V + + +
Sbjct: 33 LGSISSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVS--GVSLGYGYVNFYSRQE 90
Query: 68 ALDAIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVE 122
A A+E L A + + V P +R++ R NL+VKNL+ + + L E
Sbjct: 91 ATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRA-------NLFVKNLEPSIDSKNLYE 143
Query: 123 KFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE----------- 171
FS FG I S ++ D+ G SKG+G +V +++ + AI R
Sbjct: 144 MFSSFGTILSCKVATDSAGQSKGYG----FVQYETEESAQDAINRLNGMLANDREMFVGL 199
Query: 172 RMRKERAEL------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
MR+ E+ KN+ E + +L+Q F+ G I+S +MR G+SK
Sbjct: 200 HMRRRNREVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSK 251
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
S ++LYV +L + + E L FS+ + S+ + +D +G S G+G V + +R +
Sbjct: 35 SISSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGY-VNFYSRQEATC 93
Query: 161 ERKAI---------LRAQFER----MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISS 205
+A+ +R F +RK RA L+ KN+ +D L + FS GTI S
Sbjct: 94 ALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILS 153
Query: 206 VKIMRTDRGISKGH 219
K+ G SKG+
Sbjct: 154 CKVATDSAGQSKGY 167
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 40 MWSQRDPPLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 98
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + ++ VG F R +R E F N+Y+KN +DM
Sbjct: 99 HFETQEAAERAIEKMNGMLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 158
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 159 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 219 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 278
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 279 KVM-MEGGRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQY 337
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 338 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 397
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 398 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 457
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 458 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 517
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 518 GERLFPLIQAM 528
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 148/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN D+M
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D NG S+GFG K++YV
Sbjct: 204 DEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G SKG + E T + M
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEM 353
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 172/423 (40%), Gaps = 83/423 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ KL ++FSK+G+ S +V+ + GKS+G+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + +YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
YVA AQ+K ER+A L Q+ +RM RA IN Q S
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-----------YQAAPPS------ 406
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRI--MYAKQGPGLASTIFPVHPTLYQRALQVYQAPD 268
G+ MA + R +Y A+ PG T V P +Q +
Sbjct: 407 -------GYFMAAIPQAQNRAAYYPAAGQMAQLRPGPRWTTQNVRPQHFQN-----MSGG 454
Query: 269 FRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK------PS 322
R G P FS PS P +T R P P + P
Sbjct: 455 IRPSGPRPQTFSTVRPSS---QVPRMMTTQRVGQSTDTTMGPRPATAAAAAATPVRGVPQ 511
Query: 323 YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLV 378
Y Y + P+ +T + +SML A P E+K +LG+RL+PL+
Sbjct: 512 YKYAAGVRNPQQHMNTQPQVTMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLI 571
Query: 379 KKL 381
+ +
Sbjct: 572 QNM 574
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 152/279 (54%), Gaps = 40/279 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG I S KVV + G +KGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTDENGVNKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + ++YVG FI R +R+ + F N+++KNL +D+
Sbjct: 145 HFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQFTNVFIKNLAEDVD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E ++G I S I D + SKGFG + LY
Sbjct: 205 DGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER A L+A+FE +++ER+ Y KN++DE+D+ L++ FS+ GTI+S
Sbjct: 264 GRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAK 240
K+M D+ SKG + E T + RI+ AK
Sbjct: 324 KVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAK 362
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
N+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q
Sbjct: 10 MNSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAE 66
Query: 163 KAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTIS 204
+A+ F+ ++ + KN++ +D + FS G I
Sbjct: 67 RALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHIL 126
Query: 205 SVKIMRTDRGISKGH 219
S K++ + G++KG+
Sbjct: 127 SCKVVTDENGVNKGY 141
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 144/268 (53%), Gaps = 34/268 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH+ FS FG++ S KV + + G S+G+GFV
Sbjct: 124 MWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ A DAIE + G + +E+YV + + DRI + ++F N+YVKN+D + T
Sbjct: 184 HFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETT 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + FS++G+I S + KDA G KGFG S+ LYV
Sbjct: 244 DEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E+ R E+ + KN++D +D+ +LK+ F+ GTI+S
Sbjct: 304 GRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSA 363
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL 234
++MR G SKG + E T +
Sbjct: 364 RVMRDQEGNSKGFGFVCFSSPEEATKAM 391
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + Q+FS++G+I S+ + EGK KG+GFV + +A A+E+L
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEEL 291
Query: 76 QGATVERMELYVGPFIRRADRIQEG------------SSFN--NLYVKNLDDDMTEEILV 121
G + LYVG ++ +R +E + F NL++KNLDD + +E L
Sbjct: 292 NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLK 351
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + +D G SKGFG K LYVA AQ+
Sbjct: 352 EEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 412 KDVRRSQLAQQIQ 424
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L I L+ +FS G I S +V K S GY +V Y+ E+ AI++L
Sbjct: 53 YVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELN 112
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
A + + P IR+ +GS N+++KNL + + L E FS FG++
Sbjct: 113 YAEINGRPCRIMWSERDPAIRK-----KGSG--NIFIKNLHPAIDNKALHETFSTFGEVL 165
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D NG S+GFG +YVA K +R + L
Sbjct: 166 SCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL-- 223
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E + +Y KNI+ E + E +Q FSQ G I S + + G KG
Sbjct: 224 --EEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKG 272
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N F+KNL +ID+ KL + F+ +G I S++V+ QEG SKG+GFV +S+PE A
Sbjct: 329 AKFQGV-NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEA 387
Query: 69 LDAIEKLQGATVERMELYV 87
A+ + V LYV
Sbjct: 388 TKAMTEKNQQIVAGKPLYV 406
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV LD ++TE +L + FS G I+S+ + +DA S G+ YV +A +KA
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYA----YVNYTDYEAGKKA 107
Query: 165 ILRAQFER--------MRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSV 206
I + M ER KN++ +D L + FS G + S
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 207 KIMRTDRGISKG 218
K+ + G S+G
Sbjct: 168 KVALDENGNSRG 179
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 148/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN D+M
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D NG S+GFG K++YV
Sbjct: 204 DEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G SKG + E T + M
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEM 353
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/429 (27%), Positives = 175/429 (40%), Gaps = 98/429 (22%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ KL ++FSK+G+ S +V+ + GKS+G+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + +YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
YVA AQ+K ER+A L Q+ +RM RA IN Q S
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-----------YQAAPPS------ 406
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRI--MYAKQGPGLASTIFPVHPTLYQRALQVYQAPD 268
G+ MA + R +Y A+ PG T V P +Q
Sbjct: 407 -------GYFMAAIPQAQNRAAYYPAAGQMAQLRPGPRWTTQNVRPQHFQNM-------- 451
Query: 269 FRHGGMIPNGFSPPPPSPLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK-- 320
GG+ P+G P P + P S TQ G G P P +
Sbjct: 452 --SGGIRPSG---PRPQTFSTVRPSSQVPRMMTTQRVGTQTMG----PRPATAAAAAATP 502
Query: 321 ----PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQ 372
P Y Y + P+ +T + +SML A P E+K +LG+
Sbjct: 503 VRGVPQYKYAAGVRNPQQHMNTQPQVTMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGE 562
Query: 373 RLYPLVKKL 381
RL+PL++ +
Sbjct: 563 RLFPLIQNM 571
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 151/507 (29%), Positives = 220/507 (43%), Gaps = 130/507 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D G S+GFG K ++V
Sbjct: 204 DERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE +++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL----ASTI-----------FPVHPTLYQRALQVYQAPD--------------- 268
++ G+ A+TI P P R Y AP+
Sbjct: 383 MQRIAGMRAMPANTIINQFQPTSGYFMPAVPQAQNRT--TYYAPNQLAQMRPNPRWQQQG 440
Query: 269 ---FRHGGMIPNGFSPPPP-SPLFLMAPDSVTQ-YRGAMMN-GHANFPMPL----MLSNL 318
+PN P P + M P+S +Q RG N +F + + M L
Sbjct: 441 GRGQGGFQGMPNTLRQPGPRGNMRQMTPNSSSQGPRGVFSNISFKSFNLTVRRLKMYILL 500
Query: 319 QKPSYNYPISQPRAGQAAANNLTNGNHRAAASNEN------------------------L 354
S +P G N+T + N N
Sbjct: 501 HPGSAQTMAPRPSMGVPGPRNVTPYKYATGVRNPNPQVVQPIALQQAQPAVHVQGQEPLT 560
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
SML A P E+K +LG+RL+PL++ +
Sbjct: 561 PSMLAAAPPQEQKQMLGERLFPLIQAM 587
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV +Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFSQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 224/479 (46%), Gaps = 103/479 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E FS+FGK+ S+ + +D++G S+GFG ++LYV
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPV-----HPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPD 293
++ + + P PT Y L P + + PP P+P + P
Sbjct: 383 MQRLSTMRALGSPFLGSFQQPTSY--FLPAVPQPPGQAAYYGSSSMPPPQPAPRWTSQPP 440
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAAN--------------- 338
+ G + P +S++++ S P P Q AN
Sbjct: 441 RSSSASMVRPPGMSRRP-SAHISSMRQASTQVPRPLPHT-QRVANIGTQTTGSSGTGCCM 498
Query: 339 --------NLTNGNHRA------AASNENLS-SMLVATSPDERKDILGQRLYPLVKKLK 382
T+ HR E L+ SML A E+K ++G+RLYPL+++++
Sbjct: 499 PGRPLLPYKSTHNTHRVQEPAVHVPGQEPLTVSMLAAAPLHEQKQMIGERLYPLIREVQ 557
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 34/257 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+ + + L + FS F
Sbjct: 70 DTMNFEMIKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEASIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERA 178
G I S ++ D +G S+GFG A + A + F+ R+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREV 181
Query: 179 EL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
EL KN+ +VDE L++ FSQ G + SVK+MR G S+G +T
Sbjct: 182 ELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETH 241
Query: 228 RERTSYLRIMYAKQGPG 244
E + M K+ G
Sbjct: 242 EEAQKAVVHMNGKEVSG 258
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ +D L FS G
Sbjct: 64 DAERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 306 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSA 365
Query: 207 KIMR 210
K+MR
Sbjct: 366 KVMR 369
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++F KFG+I S+ + QEGKS+G+GFV +ST +SA A++++
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 122 EKFSEFGKITSLVISKD 138
E FS FG ITS + +D
Sbjct: 354 ELFSPFGTITSAKVMRD 370
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 55 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ EV + E ++ F + G I+S + R G S+G
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG 274
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 306 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSA 365
Query: 207 KIMR 210
K+MR
Sbjct: 366 KVMR 369
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++F KFG+I S+ + QEGKS+G+GFV +ST +SA A++++
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 122 EKFSEFGKITSLVISKD 138
E FS FG ITS + +D
Sbjct: 354 ELFSPFGTITSAKVMRD 370
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 55 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ EV + E ++ F + G I+S + R G S+G
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG 274
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 144/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L++ FS FG+I S K+ + GKSKG+GFV
Sbjct: 117 MWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFV 176
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
+ E+A +AI+ + G + E+YV P + + DR + E ++F N+YVKNLD + T
Sbjct: 177 HFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEAT 236
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE F +G ITS+ + KDA G S+GFG + LYV
Sbjct: 237 EEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYV 296
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q++ + E+ Y KN++D +D+ +LK+ F+ GTI+S
Sbjct: 297 GRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSA 356
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
++MRT+ G SKG T E T
Sbjct: 357 RVMRTENGKSKGFGFVCFSTPEEAT 381
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 38/242 (15%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQY 62
+PN E + + +V L ++ L+ IFS G + S +V K S GY +V +
Sbjct: 35 SPNVENVTASL---YVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 91
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVE 122
+ E+ AIEKL ++ + R ++GS N+++KNL D+ + L E
Sbjct: 92 NDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSG--NIFIKNLHPDIDNKTLYE 149
Query: 123 KFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
FS FG I S I+ D G SKGFG + +YVA K
Sbjct: 150 TFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSK 209
Query: 160 AERKAIL---RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGIS 216
+R++ L RA F + KN++ E E + + F GTI+SV + + G S
Sbjct: 210 KDRQSKLDEARANFTNV------YVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKS 263
Query: 217 KG 218
+G
Sbjct: 264 RG 265
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 150/514 (29%), Positives = 219/514 (42%), Gaps = 151/514 (29%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG----------------------------- 147
++ L E FS+FGK S+ + D+ G SKGFG
Sbjct: 204 DDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQA 263
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDE 190
+++YV RAQK+ ER++ L+ +FE++++ER Y KN++D +D+
Sbjct: 264 VADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDD 323
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MA 222
L++ FS GTI+S K+M T+ G SKG C +A
Sbjct: 324 DRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 382
Query: 223 IAQTKRERTSYLRIMYAKQ--------GPGLAS------TIFPVHPTLYQRALQVYQAP- 267
+AQ K ER + L Y ++ GP L S P P RA +P
Sbjct: 383 LAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIPQPQTRATFYSPSPV 442
Query: 268 -DFRHGGMIPNGFSPPPPSPLFLMA----------------------------------- 291
R S PPP+P+ A
Sbjct: 443 VPVRPATRWSAQPSRPPPTPILRAAVPPRRLLTNISTMRQASTQVPRVPPQAQRVANIGT 502
Query: 292 -------PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGN 344
P S T RG +++ + N+Q + P+ P+ G+ A + G
Sbjct: 503 QTVSARVPSSPTLPRGTPQYKYSS-----SVRNVQPMGHMPPVVAPQVGEPAVH--VQGQ 555
Query: 345 HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
A S+L A P E+K ++G+RLYPL+
Sbjct: 556 EPLTA------SVLAAAPPQEQKQMIGERLYPLI 583
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNLDD + + L + FS F
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGLRK-------SGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + D NG S+G+G A +A +RK + F+ ++
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFV-GHFKSRKERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AE KN D++D+ L++ FS+ G SVK+M G SKG
Sbjct: 181 AEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKG 232
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDV-ATRRSLG--YAYINFQQPV 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + KN++D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 202 TISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
I S K++ + G S+G+ +T T + M
Sbjct: 124 NILSCKVVCDENG-SRGYGFVHFETHEAATRAIETM 158
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 168/337 (49%), Gaps = 72/337 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--QEGSSFNNLYVKNLDDDMTEE 118
+ T E+A +I+K+ G + ++YVG FI R ++ ++ F N+YVKN +D +E
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDE 195
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L E F +GKITS + +G SKGFG K LYVA
Sbjct: 196 KLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVA 255
Query: 155 RAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVK 207
RAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S K
Sbjct: 256 RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAK 315
Query: 208 IMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYA 239
+M + G SKG C +A+AQ K ER + L Y
Sbjct: 316 VMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEERKADLASQYM 375
Query: 240 KQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
+ G+ Q+ Q+YQ P+ G +P
Sbjct: 376 RHMTGMR----------MQQLGQIYQ-PNAASGFFVP 401
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 35/231 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L ++ L FS G + S +V V+++ +S GY +V + P A
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 71 AIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A++ + V + + P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQF----ER 172
FG I S ++ D G SKG+G A + K + +F E+
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQ 171
Query: 173 MRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 172 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG 222
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 132/251 (52%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL TID +L+ FS G I S K+ + + G SKGYGFV
Sbjct: 75 MWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEHGNSKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
+ E A AIEK+ G + +YVG FI +DR FNN+YVKN D T+E
Sbjct: 135 HFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDE 194
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + FSEFG+I S + K+ G SKGFG + LY +R
Sbjct: 195 KLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASR 254
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ R ER Y KN++D +D+ LK+ FS G I+S K
Sbjct: 255 AQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAK 314
Query: 208 IMRTDRGISKG 218
+M G SKG
Sbjct: 315 VMTDANGRSKG 325
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 38/195 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + KL +FS+FG+I+S V + EGKSKG+GFV + P+ A A+ +
Sbjct: 181 NIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 76 QGATVERMELYVGPFIR---------------RADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G + LY R RA+R+ + NLYVKNLDD++ +E L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
E FS +G ITS + DANG SKGF GSK LYVA AQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 158 KKAERKAILRAQFER 172
+K +R+A L A+ ++
Sbjct: 361 RKEDRRAKLIAEHQQ 375
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L L+ FS+ G + S+++ + S GYG+V + P+ A A+E L
Sbjct: 4 YVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALENLN 63
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P +R++ + N+++KNLD + ++ L + FS GKI
Sbjct: 64 YESFMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKTIDQKQLYDTFSFIGKIL 116
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERK-AILR 167
S I+ D +G SKG+G +V+YV + ++RK A +
Sbjct: 117 SCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGK 176
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN + + +L+ FS+ G I S + + G SKG
Sbjct: 177 LRFNNI------YVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDP 230
Query: 228 RERTSYLRIMYAKQ 241
+R+M+ K+
Sbjct: 231 DHAEQAVRVMHGKE 244
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +L TE +L KFSE G + S I +D A S G+G YV + K +
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYG----YVNFEEPKDAER 57
Query: 164 AILRAQFER----------------MRKE-RAELY-KNINDEVDEIELKQYFSQCGTISS 205
A+ +E +RK + ++ KN++ +D+ +L FS G I S
Sbjct: 58 ALENLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILS 117
Query: 206 VKIMRTDRGISKGH 219
KI + G SKG+
Sbjct: 118 CKIAMDEHGNSKGY 131
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 143/274 (52%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL TIDN LH F+ FGDI S KV + G SKGYGFV
Sbjct: 131 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T ESA AI+ + G + ++VG + R +R I E + F NLY+KNL ++T
Sbjct: 191 HYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVT 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L E FS++G +TS + D +G +GFG +LYV
Sbjct: 251 TEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYV 310
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQK+ ER A LR E+ + E Y KN++DE D+ +L+ F GTI+S
Sbjct: 311 ARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSC 370
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M+ D+G+S+G E T + M K
Sbjct: 371 KVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGK 404
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 31/241 (12%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+TPN+ + +V L T+ L++IFS G + S +V +S GY +V
Sbjct: 45 ATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVN 104
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y A A+E+L + ++ + + D + N+++KNLD+ + + L
Sbjct: 105 YLNAADAERALEQLNYSLIKNKACRI--MWSQRDPSLRKTGQGNIFIKNLDETIDNKALH 162
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+ F+ FG I S ++ D+ G SKG+G KV++V
Sbjct: 163 DTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Query: 159 KAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ ER+ A+ + +R LY KN+ EV EL + FS+ G ++S + + G +
Sbjct: 223 RRERQ----AKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHR 278
Query: 218 G 218
G
Sbjct: 279 G 279
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV LD +TE +L E FS G ++S+ + +DA T + G L A A++ E
Sbjct: 58 SLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAV-TRRSLGYAYVNYLNAADAERALE 116
Query: 162 R--------KA--ILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+ KA I+ +Q + ++ + KN+++ +D L F+ G I S K+
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 176
Query: 209 MRTDRGISKGH 219
G SKG+
Sbjct: 177 AMDSTGASKGY 187
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 148/497 (29%), Positives = 224/497 (45%), Gaps = 121/497 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN L+ FS FG+I S K+ V + S+GYGFV
Sbjct: 85 MWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
Y T E+A +AI K+ G + +++VG F+ + +R++ + F N++VKN D +
Sbjct: 145 HYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKKFKNVFVKNFGDSLD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE L E F + G+ITS V+ ++ G SKGFG + L V
Sbjct: 205 EEKLKEMFGKHGEITSCVVMAES-GKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER L+++FE + ER Y KN+ D +D+ L+ FS GTI+S
Sbjct: 264 CRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M+ ++GISKG C +A+AQ K ER + L +
Sbjct: 324 KVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRKEERRAQLSTQF 383
Query: 239 AKQ----------------------GPGLASTIFPVH--PTLYQRALQVY------QAPD 268
++ PG P + P + Q Q+ QAP
Sbjct: 384 LQRVNPLRYNASGTMPQAGYSFQAGQPGFYIPTVPTNQRPFITQSVNQITRPRWQSQAPV 443
Query: 269 FR---------HGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNL- 318
+ H I G + PP P AP+ + G MP +
Sbjct: 444 QQIPANTQYASHVTQIRAGAA--PPRPRHQGAPNVARREPAPYQPGMGTRTMPSQQVPIR 501
Query: 319 --------QKPSYNY-PISQPRAGQAAANNLTNGNHRAAA---SNENLSSMLVAT-SPDE 365
Q+ +Y Y P ++ Q A + +AAA + L+S ++AT +P E
Sbjct: 502 PNVPAVAQQRTAYKYNPNTR---NQYPAGQMIGQPDQAAAIIQGPDQLTSTILATATPTE 558
Query: 366 RKDILGQRLYPLVKKLK 382
+K ++G+RL+PLV++ +
Sbjct: 559 QKQMIGERLFPLVQEFQ 575
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L+ D+TE +L EKFS+ G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLV-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
I ++ ++ + KN++ +D L FS G I S
Sbjct: 69 IDTMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
KI + +S+G+ +TK
Sbjct: 129 KIAVDSKNVSRGYGFVHYETK 149
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 36/253 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 107 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFV 166
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +IEK+ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 167 HFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMT 226
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 227 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMY 286
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 287 VGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITS 346
Query: 206 VKIMRTDRGISKG 218
K+M + G SKG
Sbjct: 347 AKVM-MEEGRSKG 358
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 113/229 (49%), Gaps = 52/229 (22%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + + KL ++F K+G I S KV++ +GKS+G+GFV + P SA A+ L
Sbjct: 215 NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDL 274
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E +YVG ++A+R QE F NLYVKNLDD + +E L
Sbjct: 275 NGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERL 334
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 335 RKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQ 393
Query: 158 KKAERKAILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQCGTISS 205
+K +RKA L +Q+ +RM R + ++ Q F Q G S
Sbjct: 394 RKEDRKAHLASQYMQRMANMRMQ------------QMGQIFHQPGNAGS 430
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + F+ FG I S+KV++ +EG+SKG+GFV +S PE A
Sbjct: 314 RYQGV-NLYVKNLDDTIDDERLRKEFTPFGTITSAKVMM-EEGRSKGFGFVCFSQPEEAT 371
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 372 KAVTEMNGRIVGSKPLYVALAQRKEDR 398
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 38/254 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 188 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 247
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
E+ L + F ++G ITS V+SKD +G S+GFG K +
Sbjct: 248 EDKLKDMFEKYGTITSHKVMSKD-DGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCM 306
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 307 YVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 366
Query: 205 SVKIMRTDRGISKG 218
S K+M + G SKG
Sbjct: 367 SAKVM-MEEGRSKG 379
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 105/203 (51%), Gaps = 40/203 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + KL +F K+G I S KV+ +GKS+G+GFV + P++A A+ +L
Sbjct: 236 NVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLEL 295
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E +YVG ++A+R QE F NLYVKNLDD + +E L
Sbjct: 296 NGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERL 355
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 356 RKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQ 414
Query: 158 KKAERKAILRAQF-ERMRKERAE 179
+K +RKA L +Q+ +RM R +
Sbjct: 415 RKEDRKAHLASQYMQRMANVRMQ 437
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + F+ FG I S+KV++ +EG+SKG+GFV +S PE A
Sbjct: 335 RYQGV-NLYVKNLDDTIDDERLRKEFTPFGTITSAKVMM-EEGRSKGFGFVCFSQPEEAT 392
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 393 KAVTEMNGRIVGSKPLYVALAQRKEDR 419
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 156/304 (51%), Gaps = 63/304 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQ 241
Y Q
Sbjct: 376 YMLQ 379
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 53/245 (21%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ L FS G + S +V V+++ +S GY +V + P A A++
Sbjct: 5 YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAERALDT 62
Query: 75 LQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ V + + P +RR S N+++KNLD + + + + FS FG
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRAIDNKAIYDTFSAFGN 115
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S ++ D G SKG+G K +YV K I
Sbjct: 116 ILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG--------KFIP 167
Query: 167 RAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCM 221
R + E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 168 RKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 222 AIAQT 226
+T
Sbjct: 228 VAFET 232
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD +++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 242 EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 218/484 (45%), Gaps = 121/484 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE+++++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLAS-----TIF-------PVHPTLYQRALQVYQAPDFRHGGMIPNG 278
++ GP L S + F P Y L + P + P+
Sbjct: 383 MQRLSTVRALGGPLLGSFHQPTSYFLPSVPQPPAQAAYYASGLPMQPTPRWTAPPPRPSS 442
Query: 279 FS------------------------PPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLM 314
S PPP P + TQ GA G++ PL+
Sbjct: 443 ASVVRPPAMSRRPPAQVSSVRQASTQVPPPVPHTQRVANIGTQTTGASGVGYSTPGGPLL 502
Query: 315 LSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRL 374
++N+ + +P LT +SML A E+K ++G+RL
Sbjct: 503 THRYPSATHNHGVQEPAVRILGQEPLT-------------ASMLAAAPLHEQKQMIGERL 549
Query: 375 YPLV 378
YPL+
Sbjct: 550 YPLI 553
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + D +G S+GFG A ++A +RK + F+ R+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFV-GHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQT 226
EL KN++ +VDE L+ FS+ G + SVK+MR D G S+G Q
Sbjct: 181 VELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQK 240
Query: 227 KRERTSYLRIMYAKQGPG 244
E + M K+ G
Sbjct: 241 HEEAQKAVMDMNGKEVSG 258
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ D G
Sbjct: 124 NILSCKVVCDDHG 136
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 143/247 (57%), Gaps = 35/247 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D D T
Sbjct: 188 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 247
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
+E E F +FG+ITS +++D+ +G S+GFG S+ LY
Sbjct: 248 DEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLY 307
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L+ FS GTI+S
Sbjct: 308 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITS 367
Query: 206 VKIMRTD 212
K+MR +
Sbjct: 368 AKVMRDN 374
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 150/276 (54%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR +G GN F+KNL IDN ++ FS FG+I S KV +G SKGYGFV
Sbjct: 136 MWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFV 195
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T SA AIEK+ G + +++VG F RA R++E G + N++VKN + +
Sbjct: 196 HFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLD 255
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG----------SKV---------------L 151
E L E FS++G+I S V+ DA G KGFG SK L
Sbjct: 256 EAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKL 315
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
V RAQKK+ER A L+ ++E +++ER + Y KNI +E+ + L+ +F+Q GTI+
Sbjct: 316 SVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTIT 375
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E T+ + M +K
Sbjct: 376 SAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSK 411
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 43/196 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D KL ++FSK+G+I S+ V+ EGK KG+GFV Y+ PE+A A++ L
Sbjct: 244 NVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDL 303
Query: 76 QGATVERMELYVGPFIRRADRIQEGSS------------------FNNLYVKNLDDDMTE 117
+ +E EL + + RA + E S+ NLYVKN+++++T+
Sbjct: 304 NESILEGTELKLS--VCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTD 361
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E L F++FG ITS + D NG SKGFG +K LYVA
Sbjct: 362 EGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVA 421
Query: 155 RAQKKAERKAILRAQF 170
AQ+K +R+A L +Q+
Sbjct: 422 LAQRKEDRRAQLASQY 437
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKN+ + + L F++FG I S+KV+V + G+SKG+GFV + PE A
Sbjct: 344 RYQGV-NLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEAT 402
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ + LYV R+ DR
Sbjct: 403 AAVTEMNSKMIGAKPLYVALAQRKEDR 429
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
S +LY+ +L D+TE +L EKFS G + S+ + +D N + G YV Q
Sbjct: 60 SMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRD-NTSRLSLG--YAYVNFQQPADA 116
Query: 162 RKAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTI 203
+A+ FE + R ++ KN++ +D + FS G I
Sbjct: 117 ERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNI 176
Query: 204 SSVKIMRTDRGISKGHCM------AIAQTKRERTS 232
S K+ D G SKG+ A AQT E+ +
Sbjct: 177 LSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVN 211
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 209/459 (45%), Gaps = 91/459 (19%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAI 72
G+GN FVKNL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T +SA +AI
Sbjct: 127 GVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAI 186
Query: 73 EKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
EKL G + +++VGPF+R+ +R + F N+YVKNL + T++ L F ++G I
Sbjct: 187 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSI 246
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
+S V+ +D +G S+ FG K YV +AQKK+ER+ L
Sbjct: 247 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 306
Query: 168 AQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
++E+ + LY KN++D V + +L++ F++ GTI+S K+MR G SKG
Sbjct: 307 RRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSG 366
Query: 221 ----------------------------MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV 252
+A+AQ K ER + L+ +++ P + P
Sbjct: 367 FVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPR 426
Query: 253 HPTLYQRALQVYQAPDFRHGG--MIPN--GFSPPP-------PSPLFLMAPDSVTQYRGA 301
P A + Q + G +IP+ GF P PS +M P G
Sbjct: 427 MPIFPGGAPGLGQQIFYGQGSPPIIPHQPGFGYQPQLVPGLRPSFFPMMQPGQQGPRPGG 486
Query: 302 MMNGHANF------PMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNEN-- 353
+G PMP M + Y P G+ + G A + N
Sbjct: 487 RRSGDGPMRHQHQQPMPYMQPQMMPRGRGY--RYPPGGRNMPDGPMLGGMVPVAYDMNGM 544
Query: 354 ----------LSSMLVATSPDERKDILGQRLYPLVKKLK 382
L++ L +P +++ +LG+ LYPLV +++
Sbjct: 545 PIAQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIE 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 25/221 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + +L+ F++ + S +V + S GYG+V YS E A A++KL
Sbjct: 44 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKLN 103
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+T+ + + R + + G NL+VKNLD + + L E FS G I S ++
Sbjct: 104 YSTLNGKMIRITYSSRDSSARRSG--VGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVA 161
Query: 137 KDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE-------- 179
D G S+G+G + K A K I F +RKE E
Sbjct: 162 ADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPF--LRKEERESAADKMKF 219
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+++ + ELK F Q G+ISS +MR G S+
Sbjct: 220 TNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSR 260
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 91 IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSK 149
I D + G+ +LYV +LD ++T+ L + F+E ++ S+ + +D A TS G+G
Sbjct: 29 IGGGDGVNHGA-LCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYG-- 85
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAEL------------------YKNINDEVDEI 191
YV + + KA+ + + + + + KN++ VD
Sbjct: 86 --YVNYSNTEDAEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNK 143
Query: 192 ELKQYFSQCGTISSVKIMRTDRGISKGH 219
L + FS CGTI S K+ G S+G+
Sbjct: 144 TLHETFSGCGTIVSCKVAADHMGQSRGY 171
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 167/293 (56%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E + F N+Y+KN DDM
Sbjct: 143 HFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + +D++G SKGFG ++L+V
Sbjct: 203 DERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE++++ER +LY KN+++ +D+ +L++ FS G+IS V
Sbjct: 263 GRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + E T + M G L S P++ L Q+
Sbjct: 323 KVMQEE-GRSKGFGLICFSSPEEAT---KAMTEMNGRILGSK--PLNIALAQK 369
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G S+G+ Q +
Sbjct: 131 SDDQG-SRGYAFVHFQNQ 147
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 146/271 (53%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN ++ FS FG+I S +V +E SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A AI K+ G + ++YVG FI R +R + + F N+Y+KN D++
Sbjct: 145 HFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDELD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L+ F ++GKITS + D +G ++GF G + LYV
Sbjct: 205 DDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYV 264
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER++ L+ FE++++ER Y KN++D +D+ L++ F G I+S
Sbjct: 265 GRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFGNITSA 324
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M G SKG + E T + M
Sbjct: 325 KVMTDANGRSKGFGFVCFSSPEEATKAVTEM 355
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 102/192 (53%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ KL IF K+G I S+KV+ GK++G+GFV + P+SA A+E+L
Sbjct: 193 NVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEEL 252
Query: 76 QGATVERMELYVGPFIRRADRIQE---------GSSFN-----NLYVKNLDDDMTEEILV 121
G + LYVG ++A+R E N NLYVKNLDD + +E L
Sbjct: 253 NGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLR 312
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
++F FG ITS + DANG SKGFG SK LYVA AQ+
Sbjct: 313 KEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 372
Query: 159 KAERKAILRAQF 170
K +RKA L +Q+
Sbjct: 373 KEDRKAHLASQY 384
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +D+ +L + F FG+I S+KV+ G+SKG+GFV +S+PE A
Sbjct: 291 RYQGV-NLYVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEAT 349
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 350 KAVTEMNGRIVVSKPLYVALAQRKEDR 376
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
++ + SKG+
Sbjct: 129 RVATDEEAASKGY 141
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 38/254 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
++ L E F ++G ITS V+SKD +G S+GFG K +
Sbjct: 205 DDKLKEMFEKYGTITSHKVMSKD-DGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCM 263
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 323
Query: 205 SVKIMRTDRGISKG 218
S K+M + G SKG
Sbjct: 324 SAKVM-MEEGRSKG 336
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 40/203 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + + KL ++F K+G I S KV+ +GKS+G+GFV + P++A A+ +L
Sbjct: 193 NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E +YVG ++A+R QE F NLYVKNLDD + +E L
Sbjct: 253 NGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERL 312
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 313 RKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQ 371
Query: 158 KKAERKAILRAQF-ERMRKERAE 179
+K +RKA L +Q+ +RM R +
Sbjct: 372 RKEDRKAHLASQYMQRMANVRMQ 394
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + F+ FG I S+KV++ +EG+SKG+GFV +S PE A
Sbjct: 292 RYQGV-NLYVKNLDDTIDDERLRKEFTPFGTITSAKVMM-EEGRSKGFGFVCFSQPEEAT 349
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 350 KAVTEMNGRIVGSKPLYVALAQRKEDR 376
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDESGASKGY 141
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 200/468 (42%), Gaps = 109/468 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 137 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDMGQSKCFGFV 196
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG + + DR + +++ N+YVKN+D T
Sbjct: 197 HYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFT 256
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ E F+ +GKITS+ + KD +G SKGFG + +YV
Sbjct: 257 EKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYV 316
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN++D++D +L++ F GTI+S
Sbjct: 317 GRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSA 376
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M D G SKG T E T + M + G P++ L QR Q
Sbjct: 377 KVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGK-----PLYVALAQRKDVRRSQ 431
Query: 263 VYQAPDFRH---------GGMIPNGFSPP---------PPSPLFLMAPDSVTQYRGAMMN 304
+ Q R+ G P F PP PP AP + G
Sbjct: 432 LEQQIQARNQMRMQNAAAAGGFPGQFMPPMYYGQQGFFPPGGRGNAAP-----FPG---- 482
Query: 305 GHANFPMPLMLSNLQKPSYNYPISQPRAG------------------------------- 333
P P M+ +P +P PR G
Sbjct: 483 -----PNPQMMMRRGQPGQPFPEQWPRPGPNGQPVPVYGIPPQFQDQRAQQQQQQQQQPQ 537
Query: 334 ---QAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
Q G + L++++ + P+++K ILG+ LYP +
Sbjct: 538 QPQQQQQRGYYPGQAGVKVPAKELAAIISSVPPEQQKRILGEELYPRI 585
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 121/293 (41%), Gaps = 65/293 (22%)
Query: 5 PNSE--ARLSGIG----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGY 57
P+SE L G+ + +V L +++ L +IFS G + S +V KS GY
Sbjct: 47 PSSEEQGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGY 106
Query: 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
+V Y E AI++L + VE + + D S N+++KNL +
Sbjct: 107 AYVNYHKFEDGEKAIDELNYSLVEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDN 164
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + FS FG+I S ++ D G SK FG + ++V
Sbjct: 165 KALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVG 224
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
+ K +R+ ++FE M+ +Y KNI+ E E ++ F+ G I+S+ + +
Sbjct: 225 KHVSKKDRE----SKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQD 280
Query: 214 GISKG--------HCMAI--------------------AQTKRERTSYLRIMY 238
G SKG H A+ AQ KRERT L+ Y
Sbjct: 281 GKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQY 333
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 183/367 (49%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 135 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 194
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 195 DDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 254
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 255 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 314
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 315 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 373
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 374 MQRVAGMRA--LPANAILSQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 425
Query: 294 SVTQYRG 300
Q G
Sbjct: 426 PRWQQGG 432
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAI- 72
+V +L S + L++ FS G + S +V +S GY +V + P E ALD +
Sbjct: 5 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 64
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ ++G + M P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 65 FDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 117
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S + D NG SKG+ + ++V R + + ER+A L A
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 176
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G SKG +
Sbjct: 177 K----AKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 232
Query: 228 RERTSYLRIMYAKQGPGLA 246
+ + M K+ G A
Sbjct: 233 EDANKAVEEMNGKEMSGKA 251
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 221/485 (45%), Gaps = 122/485 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMI---PNGFSPPP-PSP 286
++ GP L S P L QAP + G I P + PP PS
Sbjct: 383 MQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPYYGSGPPIQPAPRWTAQPPRPSC 442
Query: 287 LFLMAPDSV--------------------------------TQYRGAMMNGHANFPMPLM 314
++ P ++ TQ G M G + PL+
Sbjct: 443 ASVVRPAAMSRRPLTPVGSSRQVSTHVPHLVPHTQRVANIGTQTTGPSMTGCSTPSRPLL 502
Query: 315 LSNLQKPSYNYP-ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
P++ + +P LT +SML A E+K ++G+R
Sbjct: 503 THTYSTPAHRTDRVQEPAVHVPGQEPLT-------------ASMLAAAPLHEQKQMIGER 549
Query: 374 LYPLV 378
L+PLV
Sbjct: 550 LFPLV 554
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K++ + G S+G
Sbjct: 124 NILSCKVVCDEHG-SRG 139
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D+ G S+GFG S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 296 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSA 355
Query: 207 KIMR 210
K+MR
Sbjct: 356 KVMR 359
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ + ++F KFG+I S+ + EGKS+G+GFV +ST ESA A+E++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V +LYVG ++ A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 122 EKFSEFGKITSLVISKD 138
E F +G ITS + +D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAIE 73
+V L ++ L+++FS G + S +V +S GY +V Y+ E ALD +
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELN 104
Query: 74 K--LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 105 YTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV++ E ++ F + G I+S + R G S+G
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS G++ S+ + +DA N G + L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 103 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 210 RTDRGISKGH 219
+ + G+SKG+
Sbjct: 163 QDEFGVSKGY 172
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D+ G S+GFG S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 296 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSA 355
Query: 207 KIMR 210
K+MR
Sbjct: 356 KVMR 359
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ + ++F KFG+I S+ + EGKS+G+GFV +ST ESA A+E++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V +LYVG ++ A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 122 EKFSEFGKITSLVISKD 138
E F +G ITS + +D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAIE 73
+V L ++ L+++FS G + S +V +S GY +V Y+ E ALD +
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELN 104
Query: 74 K--LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 105 YTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV++ E ++ F + G I+S + R G S+G
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS G++ S+ + +DA N G + L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 103 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 210 RTDRGISKGH 219
+ + G+SKG+
Sbjct: 163 QDEFGVSKGY 172
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 183/367 (49%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 107 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 166 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 225
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS+FGK S+ + +D +G SKGFG K ++V
Sbjct: 226 DDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 285
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 286 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 345
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 346 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 404
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 405 MQRVAGMRA--LPANAILSQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 456
Query: 294 SVTQYRG 300
Q G
Sbjct: 457 PRWQQGG 463
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 42/235 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L S + L++ FS G + S +V +S GY +V + P E AL
Sbjct: 32 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 91
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD + + L + FS F
Sbjct: 92 DTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKALYDTFSAF 144
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+ + ++V R + + ER+A
Sbjct: 145 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 203
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G SKG
Sbjct: 204 ELGAK----AKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKG 254
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 213/498 (42%), Gaps = 125/498 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D G SKGFG + +YV
Sbjct: 204 DEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVH----------------PTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G+
Sbjct: 383 MQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAAYYSANQLAQLRPSPRWTTQGV 442
Query: 275 IPNGF---------SPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK----- 320
P F S P P L + P + + M P +
Sbjct: 443 RPQHFQNMPGAMRPSAPRPQALNAIRPTAAGNAQVPRMMASQRMPAQTLGQRAAGASTTA 502
Query: 321 -------PSYNYP----------ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSP 363
P Y Y SQP+ L G A SML + P
Sbjct: 503 AAPVRTMPQYKYAAGVRNPQQHMASQPQVPMQQPAVLVQGQEPLTA------SMLASAPP 556
Query: 364 DERKDILGQRLYPLVKKL 381
E+K +LG+RL+PL++ +
Sbjct: 557 QEQKQMLGERLFPLIQDV 574
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 222/492 (45%), Gaps = 121/492 (24%)
Query: 1 MW-STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
+W S + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY F
Sbjct: 90 LWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAF 148
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDM 115
V + T ++A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 149 VHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDM 208
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FS++GK S+ + D +G SKGFG K+++
Sbjct: 209 DDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMF 268
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 269 VGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 328
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 329 AKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 387
Query: 238 YAKQGPGL----ASTIF----PV--------------HPTLY--QRALQVYQAPDFRHGG 273
Y ++ G+ A+T+ P PT Y Q+ P ++ G
Sbjct: 388 YMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPTYYAPNHMAQIRPGPRWQQTG 447
Query: 274 MIPNGFSPPPPS--------PLFLMAPD---------SVTQYRGAMMNGH--ANFPMPLM 314
P GF P P + L M P SVTQ G + P
Sbjct: 448 R-PQGFQPMPNTLRQSGPRQSLRHMPPSNTQGTRGIPSVTQRVGVSSSTQTMGPRPPVSA 506
Query: 315 LSNLQKPSYNY-----PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDI 369
P Y Y P QP A ++ A SML + P E+K +
Sbjct: 507 PPPRAVPPYKYTRCPLPGVQPLQTPQPAVHVQGQEPLTA-------SMLASAPPQEQKQM 559
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 560 LGERLFPLIQAM 571
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 182/367 (49%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 81 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 139
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 140 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 199
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D G SKGFG KV++V
Sbjct: 200 DESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 259
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+
Sbjct: 260 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRA 319
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
++M D G SKG C +A+AQ K ER ++L Y
Sbjct: 320 EVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 378
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 379 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 430
Query: 294 SVTQYRG 300
Q G
Sbjct: 431 PRWQQGG 437
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 51/298 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S K+V + G S+GYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+A +AIEK+ G + +++VG F+ R +R+++ FNN+Y+KN +++
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L F FGKI S + +G +GFG K LYV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER+A L+ +F+R+++ER Y KN++D +D+ +L++ FS GTI+S
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + RI+ AK P++ L QR
Sbjct: 240 KVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAK----------PLYVALAQR 286
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 216/474 (45%), Gaps = 95/474 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 175 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 233
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 234 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 293
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 294 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 353
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 354 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 413
Query: 207 K--------IMRTDRGI--SKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPV---- 252
K + + I +K +A+AQ K ER ++L Y ++ + + PV
Sbjct: 414 KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY 473
Query: 253 ------------HPTLYQRA--------LQVYQAPDFRHGGMIPNGF----------SPP 282
P RA Q+ +P + G P+ F +P
Sbjct: 474 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPR 533
Query: 283 PP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------YNYPISQPRA 332
PP P P ++ R A + P P + P+ Y Y + R
Sbjct: 534 PPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKY-AAGVRN 592
Query: 333 GQAAANNLTNGNHRAAA----SNENLS-SMLVATSPDERKDILGQRLYPLVKKL 381
Q N + A E L+ SML + P E+K +LG+RL+PL++ +
Sbjct: 593 PQQHLNTQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAM 646
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 182/387 (47%), Gaps = 95/387 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 418
Query: 299 RGAMMNGHANFPMPLMLSNLQKPSYNY 325
R A H N L+ L +PS +
Sbjct: 419 RAAYY--HTN-----QLAQLARPSPRW 438
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 194/402 (48%), Gaps = 84/402 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 14 MWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 73 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 132
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 133 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 192
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 193 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSA 252
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 253 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 311
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P L +Q A Y P +P PP P+ L M P+
Sbjct: 312 MQRVAGMRA--LPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 363
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ 329
Q +G G P L S + P+ N P S+
Sbjct: 364 PRWQ-QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASR 404
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D+ G S+GFG S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 296 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSA 355
Query: 207 KIMR 210
K+MR
Sbjct: 356 KVMR 359
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ + ++F KFG+I S+ + EGKS+G+GFV +ST ESA A+E++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V +LYVG ++ A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 122 EKFSEFGKITSLVISKD 138
E F +G ITS + +D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAIE 73
+V L ++ L+++FS G + S +V +S GY +V Y+ E ALD +
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELN 104
Query: 74 K--LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 105 YTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV++ E ++ F + G I+S + R G S+G
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS G++ S+ + +DA N G + L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 103 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 210 RTDRGISKGH 219
+ + G+SKG+
Sbjct: 163 QDEFGVSKGY 172
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 194/402 (48%), Gaps = 84/402 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ 329
Q +G G P L S + P+ N P S+
Sbjct: 435 PRWQ-QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASR 475
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVMKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 217/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +ID L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 150/293 (51%), Gaps = 49/293 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL ++IDN LH F+ FG I S KV V + G SKGYGFV
Sbjct: 150 MWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFV 209
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Y T ESA AI+ +YVG + + DR + F N+YVKN+D +++
Sbjct: 210 HYKTSESAEAAIK----------HVYVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEIS 259
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E E F +FG +TSL +S D NG S+GFG + LYV
Sbjct: 260 EAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYV 319
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E+ + ++ Y KN++D++D+ L+Q FS GTI+S
Sbjct: 320 CRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSA 379
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
KIM D G SKG + E T + M + G P++ L QR
Sbjct: 380 KIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGK-----PLYVALAQR 427
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 147/295 (49%), Gaps = 55/295 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL IDN L+ FS FG+I S KV V G SKGYGFV
Sbjct: 157 MWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFV 216
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS-FNNLYVKNLDDDMTEEI 119
Y ESA AI+K+ G + +YVGPFIRRA+R + + N+Y+KN+ +E
Sbjct: 217 HYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAEAKYTNVYIKNMPSAWEDES 276
Query: 120 -LVEKFSEFGKITSLVISKDANGTSKGF-------------------------------- 146
L E FS+FG ITSLV+ KD G F
Sbjct: 277 RLRETFSKFGSITSLVVRKDPKGRLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGED 336
Query: 147 --------------GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNIN 185
G ++L+V Q KA R A+LRA+FE+M ++R + + KN++
Sbjct: 337 SGAEEKEEEGQKREGDQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMD 396
Query: 186 DEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
D +D+ +L+Q F G+I+S K+MR +RG+S+ + E T + M+ K
Sbjct: 397 DSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLK 451
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 43/233 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L ++F+ G + S +V +S GY +V Y + A +++ L
Sbjct: 86 YVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLN 145
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M + P +R+ S N++VKNLD ++ + L + FS FG I
Sbjct: 146 YTVIKGQPCRIMWCHRDPSLRK-------SGNGNIFVKNLDKNIDNKALYDTFSLFGNIL 198
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D NG SKG+ G K +YV ++AER + A
Sbjct: 199 SCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAEA 258
Query: 169 QFERMRKERAELYKNINDEV-DEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
++ + KN+ DE L++ FS+ G+I+S+ + + +G C
Sbjct: 259 KYTNV------YIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKGRLFAFC 305
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N ++KN+ +ID+ KL Q+F FG I S+KV+ + G S+ +GFV + +PE A
Sbjct: 384 RFQGV-NLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEAT 442
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRI 97
A+ ++ V+ LYVG RR R+
Sbjct: 443 KAVTEMHLKLVKGKPLYVGLAERREQRL 470
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 216/491 (43%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A EK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 151/265 (56%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R ++ G+ F N+Y+KN D++T
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLT 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS FGK S+ + +D G S+GFG K++YV
Sbjct: 204 DEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +F++++++R + Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG + E T
Sbjct: 324 KVM-TEAGQSKGFGFVCFSSPEEAT 347
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 41/197 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN + + KL + FS FG S +V+ ++G+S+G+GFV Y+ E A A++++
Sbjct: 192 NIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEM 251
Query: 76 QGATVERMELYVGPFIRR---------------ADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G + +YVG +R DRIQ NLYVKNLDD + +E L
Sbjct: 252 NGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGV-NLYVKNLDDSIDDERL 310
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++FS +G ITS + +A G SKGFG +K LYVA AQ
Sbjct: 311 RKEFSPYGTITSAKVMTEA-GQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 158 KKAERKAILRAQF-ERM 173
++ ERKAIL ++ +RM
Sbjct: 370 RREERKAILTNKYMQRM 386
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 194/402 (48%), Gaps = 84/402 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRGAMMNGHANFPMPLMLSNLQ------KPSYNYPISQ 329
Q +G G P L S + P+ N P S+
Sbjct: 435 PRWQ-QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASR 475
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVMKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G
Sbjct: 174 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGK 229
Query: 216 SKG 218
SKG
Sbjct: 230 SKG 232
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 156/271 (57%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 183 MWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFV 241
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E + F N+Y+KN DDM
Sbjct: 242 HFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMD 301
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D++G SKGFG ++L+V
Sbjct: 302 DERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFV 361
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+A L+ FE++++ER +LY KN++D +D+ +L + FS G+IS V
Sbjct: 362 GRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRV 421
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
KIMR + G SKG + + E T + M
Sbjct: 422 KIMR-EEGRSKGFGLICFSSPEEATKAMAEM 451
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 38/186 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 290 NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEM 349
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDDMTEEILV 121
G + L+VG ++++R E LY+KNLDD + +E L
Sbjct: 350 NGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLW 409
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
+FS FG I+ + I ++ G SKGF GSK LY+A AQK
Sbjct: 410 REFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQK 468
Query: 159 KAERKA 164
ER A
Sbjct: 469 PXERNA 474
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQ+ +
Sbjct: 110 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDT 169
Query: 163 KAI--LRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 170 MNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVM 229
Query: 210 RTDRGISKGHCMAIAQTK 227
D+G S+G+ Q +
Sbjct: 230 SDDQG-SRGYAFVHFQNQ 246
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 148/264 (56%), Gaps = 42/264 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA +IEK+ G + ++YVG FI R +R +E F N+YVKN D++
Sbjct: 136 HFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELN 195
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG------------------------SKVL 151
+E L E F ++G ITS V+ KD G S+GFG K+L
Sbjct: 196 DETLKEMFEKYGTITSHRVMIKD--GKSRGFGFVAFENPESAEHAVQELNGKELGEGKIL 253
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV RAQKK ER+ L+ +FE+++ ER Y KN++D +D+ L++ FS GTI+
Sbjct: 254 YVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTIT 313
Query: 205 SVKIMRTDRGISKGH---CMAIAQ 225
S K+M + G SKG C + A+
Sbjct: 314 SAKVM-LEEGRSKGFGFVCFSAAE 336
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 41/203 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN +++ L ++F K+G I S +V++ ++GKS+G+GFV + PESA A+++L
Sbjct: 184 NVYVKNFGDELNDETLKEMFEKYGTITSHRVMI-KDGKSRGFGFVAFENPESAEHAVQEL 242
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E LYVG ++ +R E F NLYVKNLDD + +E L
Sbjct: 243 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERL 302
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++FS FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 303 RKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQ 361
Query: 158 KKAERKAILRAQF-ERMRKERAE 179
+K +RKA L +Q+ +RM R +
Sbjct: 362 RKEDRKAHLASQYMQRMANMRMQ 384
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ +L + FS FG I S+KV++ +EG+SKG+GFV +S E A
Sbjct: 282 RYQGV-NLYVKNLDDSIDDERLRKEFSPFGTITSAKVML-EEGRSKGFGFVCFSAAEEAT 339
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQRKEDR 366
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE IL EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVV-TRRSLG--YAYVNFQQPADAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 60 LDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ + ++G SKG+
Sbjct: 120 KVAQDEKGNSKGY 132
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD ++
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F +FG+ITS +S+D G S+GFG S+ LYV
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F GTI+S
Sbjct: 308 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSA 367
Query: 207 KIMR 210
K+MR
Sbjct: 368 KVMR 371
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL S ID+ + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A+E++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 356 ELFGPYGTITSAKVMRDTN 374
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 45/248 (18%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGF 59
STP A + +V L ++ L+++FS G + S +V V++ +S GY +
Sbjct: 42 STPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 99
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y+ A+E L +G M P +R+ + N+++KNLD
Sbjct: 100 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSA 152
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ + L + F+ FG I S +++D G SKG+G K +
Sbjct: 153 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 212
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
+V K +R++ +FE M+ +Y KN++ E+D+ E ++ F + G I+S + R
Sbjct: 213 FVGHHISKKDRQS----KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 211 TDRGISKG 218
G S+G
Sbjct: 269 DQEGKSRG 276
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 185/381 (48%), Gaps = 74/381 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 102 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 161 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 220
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS+FGK S+ + +D++G SKGFG K ++V
Sbjct: 221 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 281 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSA 340
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 341 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 399
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPDSV 295
++ G+ + +Q A Y P +P PP P+ L M P+
Sbjct: 400 MQRVAGMRALPASAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPNPR 453
Query: 296 TQYRGAMMNGHANFPMPLMLS 316
Q +G G P L S
Sbjct: 454 WQ-QGGRPQGFQGMPSALRQS 473
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 19 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 78
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 79 PADAERALDTMNFDVMKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 131
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + D NG SKG+ + ++V R
Sbjct: 132 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 190
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ + ER+A L A+ KE +Y KN +EVD+ LK+ FSQ G SVK+MR G
Sbjct: 191 KSRKEREAELGAK----AKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGK 246
Query: 216 SKG 218
SKG
Sbjct: 247 SKG 249
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 140/246 (56%), Gaps = 34/246 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 138 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 197
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + +++ N+YVKN++ ++T
Sbjct: 198 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVT 257
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E FS++G++TS +++D G S+GFG + LYV
Sbjct: 258 EEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYV 317
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D++D+ +L+Q FS+ G I+S
Sbjct: 318 GRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSA 377
Query: 207 KIMRTD 212
K+MR +
Sbjct: 378 KVMRDN 383
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 47/244 (19%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
P S A L +V L ++ L ++FS+ G + S +V +S GY +V Y+
Sbjct: 60 PQSSASL------YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYN 113
Query: 64 TPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
+ A+E+L +G M P +R+ + N+++KNLD + +
Sbjct: 114 STADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNK 166
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 167 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGY 226
Query: 156 AQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
K +R++ +FE M+ +Y KNIN EV E E ++ FS+ G ++S + R G
Sbjct: 227 HIPKKDRQS----KFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEG 282
Query: 215 ISKG 218
S+G
Sbjct: 283 KSRG 286
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 124
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 125 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVA 184
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 185 QDENGNSKGY 194
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 100 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 158
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 159 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 218
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 219 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 278
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 279 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 338
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 339 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 397
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 398 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 433
Query: 299 RGA 301
R A
Sbjct: 434 RAA 436
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 151/293 (51%), Gaps = 39/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL TIDN LH F+ FGDI S KV + G SKGYGFV
Sbjct: 158 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFV 217
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T ESA AI+ + G + ++VG + R DR I E S F NLY+KNL + T
Sbjct: 218 HYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETT 277
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L E F +FG ITS + D +G +GFG VLYV
Sbjct: 278 TEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYV 337
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQK+ ER A L+ E+ + E Y KN++DE D+ +L+ F+ GTI+S
Sbjct: 338 ARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSC 397
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ ++G SKG + E T + M K L S P++ +L QR
Sbjct: 398 KVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKM---LGSK--PLYVSLAQR 445
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 25/238 (10%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+TPN+ + +V L T+ L++IFS G + S +V +S GY +V
Sbjct: 72 TTPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVN 131
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y A A+E+L + ++ + + D + N+++KNLD+ + + L
Sbjct: 132 YLNAADAERALEQLNYSLIKNKACRI--MWSQRDPSLRKTGQGNIFIKNLDETIDNKALH 189
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI---------------- 165
+ F+ FG I S ++ D +G SKG+G V YV +A K +
Sbjct: 190 DTFAAFGDILSCKVATDEHGASKGYGF-VHYVTGESAEAAIKGVNGMQLNDKVVFVGIHV 248
Query: 166 ----LRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+A+ + +R + LY KN+ E EL + F + G I+S + + G +G
Sbjct: 249 PRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRG 306
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV LD +TE +L E FS G + S+ + +DA T + G L A A++ E
Sbjct: 85 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADAERALE 143
Query: 162 R--------KA--ILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+ KA I+ +Q + ++ + KN+++ +D L F+ G I S K+
Sbjct: 144 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 203
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 204 ATDEHGASKGY 214
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD ++
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F +FG+ITS +S+D G S+GFG S+ LYV
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F GTI+S
Sbjct: 308 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSA 367
Query: 207 KIMR 210
K+MR
Sbjct: 368 KVMR 371
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL S ID+ + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A+E++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 356 ELFGPYGTITSAKVMRDTN 374
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 37/244 (15%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGF 59
STP A + +V L ++ L+++FS G + S +V V++ +S GY +
Sbjct: 42 STPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 99
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y+ A+E L +G M P +R+ + N+++KNLD
Sbjct: 100 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSA 152
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKA 164
+ + L + F+ FG I S +++D G SKG+G A A A ++K
Sbjct: 153 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 212
Query: 165 IL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
+ +++FE M+ +Y KN++ E+D+ E ++ F + G I+S + R G
Sbjct: 213 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEG 272
Query: 215 ISKG 218
S+G
Sbjct: 273 KSRG 276
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 172/353 (48%), Gaps = 62/353 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T +SA +IEK+ G + +++VG F+ R DR +E + N+Y+KN+D+++
Sbjct: 136 HFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVN 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
E+ L E F ++G ITS + +G+S+GFG K Y
Sbjct: 196 EKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ L+ +FE+ + ER Y KN++D +D+ L++ FS GTI S
Sbjct: 256 VNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKS 315
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRAL---- 261
K+M D G SKG + E T + M G P++ TL QR
Sbjct: 316 AKVM-MDDGRSKGFGFVYFSSPEEATKAVTDMN-----GRIVGTKPLYVTLAQRKKDRKA 369
Query: 262 ----QVYQ----------APDFRHGGMIPNG-FSPPPPSPLFLMAPDSVTQYR 299
Q Q P ++ G NG F P P P + P +TQ R
Sbjct: 370 HLDSQYSQRNTNMRMQSIGPIYQPGA--SNGYFVPTIPQPQYFYGPTQMTQIR 420
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSL-----VISKDANGTSKGFGSKVLYVARAQK- 158
+LYV +L D+TE +L EKFS G I S+ VI++ + G + + RA
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 159 ------KAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K I+ +Q + +RK KN++ +D + FS G I S K+
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 210 RTDRGISKGHCMAIAQTKRERT 231
+ + G SKG+ +TK+ T
Sbjct: 123 QDETGNSKGYGFVHFETKQSAT 144
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 142/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL TIDN LH F+ FGDI S KV + G SKGYGFV
Sbjct: 247 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFV 306
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T ESA AI+ + G + ++VG + R DR I E S F NLY+KNL + T
Sbjct: 307 HYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETT 366
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L E F +FG ITS + D +G +GFG VLYV
Sbjct: 367 TEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYV 426
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQK+ ER A L+ E+ + E Y KN++DE D+ +L+ F+ GTI+S
Sbjct: 427 ARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSC 486
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M+ ++G SKG + E T + M K
Sbjct: 487 KVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGK 520
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 25/238 (10%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
+TPN+ + +V L T+ L++IFS G + S +V +S GY +V
Sbjct: 161 TTPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVN 220
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y A A+E+L + ++ + + D + N+++KNLD+ + + L
Sbjct: 221 YLNAADAERALEQLNYSLIKNKACRI--MWSQRDPSLRKTGQGNIFIKNLDETIDNKALH 278
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI---------------- 165
+ F+ FG I S ++ D +G SKG+G V YV +A K +
Sbjct: 279 DTFAAFGDILSCKVATDEHGASKGYGF-VHYVTGESAEAAIKGVNGMQLNDKVVFVGIHV 337
Query: 166 ----LRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+A+ + +R + LY KN+ E EL + F + G I+S + + G +G
Sbjct: 338 PRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRG 395
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV LD +TE +L E FS G + S+ + +DA T + G L A A++ E
Sbjct: 174 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADAERALE 232
Query: 162 R--------KA--ILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
+ KA I+ +Q + ++ + KN+++ +D L F+ G I S K+
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 292
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 293 ATDEHGASKGY 303
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 160/333 (48%), Gaps = 57/333 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL IDN L+ FS FG+I S KV V + G SKGYGFV
Sbjct: 158 MWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKGYGFV 217
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS-FNNLYVKNLDDDMTEEI 119
Y ESA AI+K+ G + +YVGPFIRRA+R + + N+Y+KN+ +E
Sbjct: 218 HYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAETKYTNVYIKNMPSAWEDEA 277
Query: 120 -LVEKFSEFGKITSLVISKDANGTSKGF-------------------------------- 146
L E F+++G ITSLV+ KD G F
Sbjct: 278 RLRETFAKYGSITSLVVRKDPKGRLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGED 337
Query: 147 --------------GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNIN 185
G ++L+V Q KA R A+LRA+FE+M ++R + + KN++
Sbjct: 338 SGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMD 397
Query: 186 DEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QGP 243
D +D+ +L+Q F G+I+S K+MR +RG+S+ + E T + M+ K +G
Sbjct: 398 DSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGK 457
Query: 244 GLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
L + R Q ++ P R +P
Sbjct: 458 PLYVGLAERREQRLMRLQQRFRLPSLRPAAALP 490
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 43/233 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L ++F+ G + S +V +S GY +V Y + A +++ L
Sbjct: 87 YVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLN 146
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M + P +R+ S N++VKNLD ++ + L + FS FG I
Sbjct: 147 YTVIKGQPCRIMWCHRDPSLRK-------SGNGNIFVKNLDKNIDNKALYDTFSLFGNIL 199
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D NG SKG+ G K +YV ++AER +
Sbjct: 200 SCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAET 259
Query: 169 QFERMRKERAELYKNINDEV-DEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
++ + KN+ DE L++ F++ G+I+S+ + + +G C
Sbjct: 260 KYTNV------YIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKGRLFAFC 306
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 207/452 (45%), Gaps = 93/452 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN L+ FS FG+I S KVV G SKG+GFV
Sbjct: 76 MWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y + ESA AIEK+ G +E +++V F R DR++E F NL+VKNL D
Sbjct: 135 HYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWD 194
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG-----------------------SKVLY 152
+ L+E F +FG++ S VI + G SK G K LY
Sbjct: 195 TDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLY 254
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
RAQKKAER + L+A++E++++ER + Y KN++D +D+ L++ F Q G I+S
Sbjct: 255 CGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITS 314
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K++ G SKG C + +AQ K +R ++L+
Sbjct: 315 AKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQ 374
Query: 238 YAKQ-GPGLASTIFPVHPTLYQRALQVYQAPDF-------RHGGMIPNGFSPPPPSPLFL 289
Y ++ G+ F + + Q +Q P + + M P G +P +
Sbjct: 375 YMQRVSTGIRMQAFMGNQVVNQN----FQPPRYILPTMQGQPVQMFPQGTPMVRATPRW- 429
Query: 290 MAPDSVTQY----RGAM-MNGHANFPMPLMLSNLQKPS--YNYPISQPRAGQAAANNLTN 342
P+ Q RG M G F + + N+Q PS P P Q A +
Sbjct: 430 APPNQRVQMPGMIRGRMAQQGGPQFRLTPSVRNVQIPSEVIQMPPQMPHQNQPAGDQ--- 486
Query: 343 GNHRAAASNENLSSMLVATSPDERKDILGQRL 374
A SSML +P E+K +LG+RL
Sbjct: 487 ------APETLTSSMLANANPQEQKQMLGERL 512
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 170/352 (48%), Gaps = 58/352 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +++ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITS 324
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA--LQV 263
K+M D G SKG E T + M G P++ L QR +
Sbjct: 325 AKVMMED-GRSKGFGFVCFSAPEEATKAVTEMN-----GRIIVTKPLYVALAQRKEDRKA 378
Query: 264 YQAPDF----------RHGGMIPNG-----FSPPPPSPLFLMAPDSVTQYRG 300
+ A + + G M P G F P P P P + Q R
Sbjct: 379 HLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRA 430
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 215/474 (45%), Gaps = 101/474 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D G S+GFG ++LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++RA Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGL------ASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP- 283
++ GP L AS P P +A +P + P + PP
Sbjct: 383 MQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQPA---PRWTAQPPR 439
Query: 284 --------PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNY---------- 325
P + P V R A P ++N+ +
Sbjct: 440 VSSASMVRPPAMLRRPPAQVNSVRQASTQVPPPGPHTQRVANIGTQTTGASGVGYSTPTG 499
Query: 326 PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSP-DERKDILGQRLYPLV 378
P+ + AA N + E L++ ++A +P E+K ++G+RLYPL+
Sbjct: 500 PVLTHKYSSAAHNPGVRESAVCIPGQEPLTASMLAAAPLHEQKQMIGERLYPLI 553
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G V M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPVRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + D +G S+GFG A +A +RK + F+ R+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRK-VFVGHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AEL KN++ +VDE L+ FSQ G + SVK+MR D G S+G
Sbjct: 181 AELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRG 232
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ D G
Sbjct: 124 NILSCKVVCDDHG 136
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 145/274 (52%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR----IQEGSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG + + DR ++ F N+YVKN+D +
Sbjct: 186 HYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNIDPEAN 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F+ FG +TS V+ +D G S+GFG + L+V
Sbjct: 246 DDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKK+ER+ LR +E+ + E+ Y KN+ D+VD+ +L+ F G I+S
Sbjct: 306 SRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MRT+ G SKG + E T + M K
Sbjct: 366 KVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNK 399
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ ++ + ++F+ FG++ S+ + +EG+S+G+GFV + T E A A++ L
Sbjct: 234 NVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTL 293
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ + +L+V ++++R +E S + NLY+KNL+DD+ +E L
Sbjct: 294 HDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLR 353
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+ F FG ITS + + GTSKGFG SK LYV+ AQ+
Sbjct: 354 DAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQR 413
Query: 159 KAERKAILRAQF 170
+ R+ L +Q
Sbjct: 414 REVRRQQLESQI 425
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 157/293 (53%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS FGK S+ + D G SKGFG +++YV
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE+M++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 104/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G + +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS +G ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D A+ S G+ Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN++D +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
G I S K++ + G S+GH +T+ T + M
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETM 158
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 215/474 (45%), Gaps = 101/474 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D G S+GFG ++LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++RA Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGL------ASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP- 283
++ GP L AS P P +A +P + P + PP
Sbjct: 383 MQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQPA---PRWTAQPPR 439
Query: 284 --------PSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNY---------- 325
P + P V R A P ++N+ +
Sbjct: 440 VSSASMVRPPAMLRRPPAQVNSVRQASTQVPPPGPHTQRVANIGTQTTGASGVGYSTPTG 499
Query: 326 PISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSP-DERKDILGQRLYPLV 378
P+ + AA N + E L++ ++A +P E+K ++G+RLYPL+
Sbjct: 500 PVLTHKYSSAAHNPGVRESAVCIPGQEPLTASMLAAAPLHEQKQMIGERLYPLI 553
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G V M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEVIKGQPVRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + D +G S+GFG A +A +RK + F+ R+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRK-VFVGHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AEL KN++ +VDE L+ FSQ G + SVK+MR D G S+G
Sbjct: 181 AELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRG 232
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ D G
Sbjct: 124 NILSCKVVCDDHG 136
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD ++
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F +FG+ITS +S+D G S+GFG S+ LYV
Sbjct: 246 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F GTI+S
Sbjct: 306 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSA 365
Query: 207 KIMR 210
K+MR
Sbjct: 366 KVMR 369
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL S ID+ + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A+E++
Sbjct: 234 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 293
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 294 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 353
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 354 ELFGPYGTITSAKVMRDTN 372
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGF 59
STP S A + +V L ++ L+++FS G + S +V V++ +S GY +
Sbjct: 40 STPASAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 97
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y+ A+E L +G M P +R+ + N+++KNLD
Sbjct: 98 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSA 150
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKA 164
+ + L + F+ FG I S +++D G SKG+G A A A ++K
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 165 IL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
+ +++FE M+ +Y KN++ E+D+ E ++ F + G I+S + R G
Sbjct: 211 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEG 270
Query: 215 ISKG 218
S+G
Sbjct: 271 KSRG 274
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 147/267 (55%), Gaps = 32/267 (11%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
+ +R SG N F+KNL TIDN LH FS FG I S KV + G+SKG+GFVQY
Sbjct: 2 DPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKE 61
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEEILVEK 123
ESA A++ L G + +YVGPF+R+ +R + + FNN++VKNL + T++ LV+
Sbjct: 62 ESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKV 121
Query: 124 FSEFGKITSLVISKDANGTSKGF-------------------GSKV----LYVARAQKKA 160
FS +G ITS V+ +G S+ F G K+ YV RAQKK+
Sbjct: 122 FSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKS 181
Query: 161 ERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
ER+ L+ +FE+ K+ A+ Y KN++D + + +L++ FS G I+S KIMR
Sbjct: 182 EREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQN 241
Query: 214 GISKGHCMAIAQTKRERTSYLRIMYAK 240
G+SKG T+ E + L M K
Sbjct: 242 GVSKGSGFVSFSTREEASQALTEMNGK 268
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L ++FS +G I S+ V++ +GKS+ + FV + +P+ A A+E+L
Sbjct: 103 NVFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEEL 162
Query: 76 QGATVERMELYVGPFIRRADR--------------IQEGSSFNNLYVKNLDDDMTEEILV 121
G + E YVG ++++R + NLY+KNLDD +T++ L
Sbjct: 163 NGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLR 222
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FS FGKITS I +D NG SKG G K LYVA AQ+
Sbjct: 223 ELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 282
Query: 159 KAERKAILRAQFERMR 174
K +RKA+L+AQF +MR
Sbjct: 283 KEDRKAMLQAQFSQMR 298
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 219/492 (44%), Gaps = 112/492 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 239 AKQGPGLASTIFPV----------------------HPTLY--QRALQVYQAPDFRHGGM 274
++ + + PV H Y + Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPPSQIAQLRPSPCWTAQGA 442
Query: 275 IPNGFSPPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F P + P M P S ++ R A + P P +
Sbjct: 443 RPHPFQNKPSAICPAAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P ++K +L
Sbjct: 503 PAVRTVPRYKYAAGVRNPQQHLNAQPEVTMQQPAVHVQGQETLTASMLASAPPQKQKQML 562
Query: 371 GQRLYPLVKKLK 382
G+RL+PL++ ++
Sbjct: 563 GERLFPLIEAMR 574
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 172/344 (50%), Gaps = 50/344 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L++ FS FG+I S K V+S E SKGYGFV
Sbjct: 390 MWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNILSCK-VISDENGSKGYGFV 448
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ ++A AIEK+ G + +++YVG F R +R E F N+Y+KN +DM
Sbjct: 449 HFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMD 508
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 509 NDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYV 568
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE++++ER+ Y KN++D +D+ L++ FS GTI+S
Sbjct: 569 GRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITSA 628
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA--LQVY 264
K+M + G S+G E + M K L +T P++ L QR QV+
Sbjct: 629 KVM-MEGGHSRGFGFVCFSAPEEAAKAVSEMNGK----LVATK-PLYVALAQRKRDRQVH 682
Query: 265 QAPDFRH-----GGMIPNGFSP--PPPSPLFLMAPDSVTQYRGA 301
+ M FSP PPP+ + M P Q R A
Sbjct: 683 LTNQYMQRMASFQAMSNPVFSPYQPPPTSRYFMTPLPQPQSRPA 726
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML AT P E+K ILG+RL+PL++ L
Sbjct: 853 ASMLAATPPQEQKQILGERLFPLIQAL 879
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 154/517 (29%), Positives = 230/517 (44%), Gaps = 153/517 (29%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S K+V + G S+GYGFV
Sbjct: 90 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFV 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F+ R +R++ + FNN+YVKN +++
Sbjct: 149 HFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEIN 208
Query: 117 EEILVEKFSEFGKITSLVISKD--------------------------ANGTSKGFGSKV 150
+E L + F +GKI S + D NG K+
Sbjct: 209 DETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDN--SGKI 266
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTI 203
LYV RAQKK ER+A L+ +FER+R ER Y KN++D +D+ L++ F+Q GTI
Sbjct: 267 LYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTI 326
Query: 204 SSVKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLR 235
+S K+M T+ G SKG C +A+AQ K +R ++L
Sbjct: 327 TSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLA 385
Query: 236 IMYAK-------QG-----------PGLASTIFPVHPTLYQRALQVYQAPD--------- 268
Y + QG PG A P P +A + Y P+
Sbjct: 386 SQYMQRITSMRMQGQQIGQVSQMFQPGSAGYFVPTMP----QAQRTYFTPNNMPAMRSNP 441
Query: 269 -----FRHGGMIPNGFSPPPPSP-LFLMAPDSVTQYRGAM----MNGHANFPMPLMLSNL 318
R G +GF P +P + P T R + + G + P N
Sbjct: 442 RWQTTVRPTGQPGSGFQTMPGAPQIRQQRPTGQTNVRAGVSARPITGQSGTP------NA 495
Query: 319 QKPSYNYPISQ-----PRAGQ----AAAN------------------NLTNGNHRA---- 347
Q+ P++Q P+ GQ AAAN T G +A
Sbjct: 496 QQ---RMPVNQQVGGRPQGGQPTVPAAANRQQGYKSYGGGQMMKQQPGQTPGMQQAPPQA 552
Query: 348 --AASNENLSSMLVATS-PDERKDILGQRLYPLVKKL 381
+ L++ ++AT+ P E+K +LG+RL+PL+ +
Sbjct: 553 VIVQGQDPLTATMLATAPPQEQKQMLGERLFPLISTM 589
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 73
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 74 LDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 133
Query: 207 KIMRTDRGISKGH 219
KI+ + G S+G+
Sbjct: 134 KIVCDEHG-SRGY 145
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/474 (30%), Positives = 203/474 (42%), Gaps = 102/474 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G S+G+ FV
Sbjct: 131 MWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + +R ++ + F N+++KNL+ + T
Sbjct: 191 HYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFT 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L + F FG+I S +S +G SKGF K LYV
Sbjct: 251 QKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYV 310
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER LR E R E LY KNI+DE D+ L+ F GTI+S
Sbjct: 311 GRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSA 370
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+MR D+G S+G C +++AQ K R L
Sbjct: 371 KVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQM 430
Query: 235 ------RIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFR-HGGMIPNGFSPP----- 282
R+ YA GL + +Y + Y P GG++ +PP
Sbjct: 431 QQRNAQRLQYAAAN-GLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPPMMGAR 489
Query: 283 ----PPS-------PLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPR 331
PPS P+ M P G G N+P+ N + P+ P P
Sbjct: 490 PGRYPPSGQPGAPVPMGYMPPGGA----GGNYPGMPNYPV-RPAGNARPPTAARPNGSPS 544
Query: 332 A-------GQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
GQ A +G AA + L SP E+K +LG+ +YPL+
Sbjct: 545 GAQQGLPRGQVPARPQGDGAQAAAGQPRLTAQALARASPGEQKQMLGEAIYPLI 598
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 214/495 (43%), Gaps = 122/495 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D +G S+GFG K ++V
Sbjct: 204 DERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ F+ G+I+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQ--------------GPGLASTIFPVHPTLYQRA--------LQVYQAPDFRHGGMIP 276
++ P +S P RA Q+ +P + G P
Sbjct: 383 MQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARP 442
Query: 277 NGF---------SPPPPSPLFLMAPDS-----VTQYRGAMMNGHANFPMPLMLSNLQK-- 320
+ F S P P M P S ++ R A + P P +
Sbjct: 443 HPFQNMAGAIRPSAPRPPTFSTMRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSA 502
Query: 321 ----PSYNYPI----------SQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDER 366
P Y Y +QP+ G A SML A P E+
Sbjct: 503 VRTVPQYKYAAGVRNTQQHLNTQPQVAMQQPAVHVQGQEPLTA------SMLAAAPPQEQ 556
Query: 367 KDILGQRLYPLVKKL 381
K +LG+RL+PL++ +
Sbjct: 557 KQMLGERLFPLIQAM 571
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 176/362 (48%), Gaps = 80/362 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y ++ LA+ Q+ Q++Q G N F P P P P + Q
Sbjct: 384 YMQR---LANMRM-------QQMGQIFQP------GGAGNYFVPTIPQPQRFYGPAQMAQ 427
Query: 298 YR 299
R
Sbjct: 428 IR 429
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 134 MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+++++T
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG++TS +++D G S+GFG + LYV
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L+ FS+ G I+S
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSA 373
Query: 207 KIMR 210
K+MR
Sbjct: 374 KVMR 377
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + + ++F+KFG++ SS + QEGKS+G+GFV ++T E+A A+++L
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLR 361
Query: 122 EKFSEFGKITSLVISKDA 139
FSE+G ITS + +D+
Sbjct: 362 AMFSEYGPITSAKVMRDS 379
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTADGEKALEE 120
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRK-------TGAGNIFIKNLDAAIDNKALHDTFAAFGN 173
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K +YV K +R++
Sbjct: 174 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN+EV + E ++ F++ G ++S + R G S+G
Sbjct: 232 --KFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRG 282
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 153 VARAQKKAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + +RK A KN++ +D L F+ G I S K+
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVA 180
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 181 QDEHGNSKGY 190
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 224/470 (47%), Gaps = 95/470 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E F N+YVKNL ++
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FG + S+ + +D+NG S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER++ L+ +FE+M++ER Y KN++D +++ LK+ FS G I+S
Sbjct: 264 GRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSP--------PP---PS 285
++ P L+S P L QA + G + P P PP P
Sbjct: 383 RRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSTCPP 442
Query: 286 PLFLMAPDSVTQYRGAMMNG----HANFPMPLMLSNL---------QKPSYNYPISQPRA 332
++ P S TQ+ ++G + P + N+ + S + P
Sbjct: 443 AASVVQPLSTTQHPCIHLSGASQVSSQVPHTQRVVNIGTQTTGPGGEGSSIPGQLLVPHR 502
Query: 333 GQAAANNLTNGNHRAAA---SNENLS-SMLVATSPDERKDILGQRLYPLV 378
G +A ++ +G +A ++ L+ SML A E+K ++G+RLY L+
Sbjct: 503 GTSAVHS-AHGVQESAVYVPGHQPLTVSMLAAAPLHEQKQMIGERLYSLI 551
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L+++FS G+I S +V +S GY ++ + P E AL
Sbjct: 10 LSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M + P +R+ S N+++KNL++ + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSHRDPGLRK-------SGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + + +G S+GFG A +KA +RK + F+ +K
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV-GHFKSRQKRE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AEL KN++ VDE L+ FSQ G + SVK+MR G S+G
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG 232
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
G S ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 HGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ + +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G+I S K++ + G
Sbjct: 123 GSILSSKVVYNEHG 136
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 138/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 138 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 197
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ ++T
Sbjct: 198 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVT 257
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F+++G++TS +++D G S+GFG + LYV
Sbjct: 258 EEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQELYV 317
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L+Q FS+ G I+S
Sbjct: 318 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSA 377
Query: 207 KIMR 210
K+MR
Sbjct: 378 KVMR 381
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + ++F+K+G++ SS + EGKS+G+GFV ++T SA A+E+L
Sbjct: 246 NVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEEL 305
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G ELYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 306 NGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLR 365
Query: 122 EKFSEFGKITSLVISKDA 139
+ FSEFG ITS + +DA
Sbjct: 366 QMFSEFGPITSAKVMRDA 383
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 51/246 (20%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQ 61
P S A L +V L ++ L ++FS+ G + S +V V++ +S GY +V
Sbjct: 60 PQSSASL------YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVN 111
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
Y++ + A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 112 YNSTQDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAID 164
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 165 NKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 224
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K +R+ ++FE M+ +Y KNIN EV E E ++ F++ G ++S + R +
Sbjct: 225 GYHIPKKDRQ----SKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDN 280
Query: 213 RGISKG 218
G S+G
Sbjct: 281 EGKSRG 286
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEE 124
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 125 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 184
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 185 QDENGNSKGY 194
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 146/252 (57%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SG+GN F+KNL +IDN L++ FS FG I SSKV+ EG SKGYGFV
Sbjct: 84 MWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG-SKGYGFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y +A AIE++ G + L+V F R DR E + F N+Y+KN DD+
Sbjct: 143 HYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G+ S+ + KDA G SKGFG + ++V
Sbjct: 203 DEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+M+KER A+LY KN++D +D+ L++ FS G+I V
Sbjct: 263 GRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 323 KVMQ-EAGQSKG 333
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ KL ++FSK+G S KV+ GKSKG+GFV + + E+A +A+E +
Sbjct: 191 NVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDM 250
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G + ++VG ++ +R E LY+KNLDD + +E L
Sbjct: 251 NGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
++FS FG I + + ++A G SKGFG
Sbjct: 311 KEFSVFGSICRVKVMQEA-GQSKGFG 335
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +L +D+TE++L KFS G + S+ I +D + S G+ YV Q +K
Sbjct: 11 SLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYA----YVNFLQVNDAQK 66
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A++ F+ ++ + L KN++ +D L ++FS GTI S
Sbjct: 67 ALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMS 126
Query: 206 VKIMRTDRGISKGHCMAIAQTKR 228
K+M TD SKG+ Q +R
Sbjct: 127 SKVM-TDGEGSKGYGFVHYQDRR 148
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
++KNL TID+ L + FS FG I KV+ + G+SKG+G + + +P
Sbjct: 296 YIKNLDDTIDDETLRKEFSVFGSICRVKVM-QEAGQSKGFGLICFFSP 342
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 157/293 (53%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS FGK S+ + D G SKGFG +++YV
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE+M++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 104/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G + +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS +G ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D A+ S G+ Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN++D +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
G I S K++ + G S+GH +T+ T ++ M
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTM 158
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 169/344 (49%), Gaps = 52/344 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D NG SKGFG K ++V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---- 262
K+M + G SKG + E T + M G P++ L QR +
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAH 377
Query: 263 -----VYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
+ + R + N + PPP S + MA Q R A
Sbjct: 378 LTNQYMQRMASVRVPNPVINPYQPPPSS--YFMAAIPPAQNRAA 419
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 169/344 (49%), Gaps = 52/344 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D NG SKGFG K ++V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---- 262
K+M + G SKG + E T + M G P++ L QR +
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAH 377
Query: 263 -----VYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
+ + R + N + PPP S + MA Q R A
Sbjct: 378 LTNQYMQRMASVRVPNPVINPYQPPPSS--YFMAAIPPAQNRAA 419
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 125 MWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I + +R + ++F N+YVKN+D +++
Sbjct: 185 HYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVS 244
Query: 117 EEILVEKFSEFGKITSLVISKDAN-GTSKGFG-----------------------SKVLY 152
++ F FG+ITS +++D + GTS+GFG + L+
Sbjct: 245 DDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALF 304
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++DE+D+ L+Q FS GTI+S
Sbjct: 305 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITS 364
Query: 206 VKIMR 210
K+MR
Sbjct: 365 AKVMR 369
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 63/225 (28%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F FG I S+ + + G S+G+GFV +S+ E+A A++
Sbjct: 233 NVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDA 292
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ L+VG ++ A RI++ S + NLYVKNLDD++ +E L
Sbjct: 293 LHETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERL 352
Query: 121 VEKFSEFGKITSLVISKDA-------------------------NGTSKGFG-------- 147
++FS +G ITS + +D+ G SKGFG
Sbjct: 353 RQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPD 412
Query: 148 ---------------SKVLYVARAQKKAERKAILRAQFERMRKER 177
K LYVA AQ+K RK+ L A ++ + R
Sbjct: 413 EASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQRNQIR 457
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 42/232 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS G + S +V +S GY +V Y+ A+E+L
Sbjct: 54 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEELN 113
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 114 YTLIKGRPCRIMWSQRDPALRK-------TGHGNVFIKNLDIAIDNKALHDTFAAFGNIL 166
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K ER+ +
Sbjct: 167 SCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQ----S 222
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
+F+ M+ +Y KNI+ EV + E + F G I+S + R D G S+G
Sbjct: 223 KFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRG 274
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 155/301 (51%), Gaps = 64/301 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G+SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +SA +IEK+ G + +++VG F+ R DR +E F N+Y+KN+D+++
Sbjct: 136 HFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVN 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G+S+GFG K Y
Sbjct: 196 DKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+ + ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 256 VGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEHLRREFSVFGTITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M D G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVM-MDDGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALAQRKEERKAHLNAQ 374
Query: 238 Y 238
Y
Sbjct: 375 Y 375
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 32/216 (14%)
Query: 53 KSKGYGFVQY---STPESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLY 107
+S GY +V + + E ALD + E L G + M P +R+ S N++
Sbjct: 41 RSLGYAYVNFQNMADAECALDTMNFEILNGCPMRIMWSQRDPSLRK-------SGVGNVF 93
Query: 108 VKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA--- 164
+KNLD ++ + + + FS FG I S +++D G SKG+G + ++ ++ K
Sbjct: 94 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGM 153
Query: 165 ------------ILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVK 207
+ R E+ ++A+L+ KNI++ V++ EL + F + G+I+S K
Sbjct: 154 LLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCK 213
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGP 243
+M D G S+G + +E + ++ K+ P
Sbjct: 214 VMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESP 249
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV ++G SKGYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R ++ GS F N+Y+KN +D T
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFT 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS FG+ S+ + KD G S+GFG K+LYV
Sbjct: 204 DEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +F++++++R + Y KN++D +D+ L++ F+ GTI+S
Sbjct: 264 GRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M TD SKG + E T
Sbjct: 324 KVM-TDGSQSKGFGFVCFSSPEEAT 347
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 40/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN + KL ++FS FG S +V+ ++G+S+G+GFV Y+ E A A+ ++
Sbjct: 192 NVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEM 251
Query: 76 QGATVERMELYVGPFIRR---------------ADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G + LYVG +R DRIQ NLYVKNLDD + +E L
Sbjct: 252 NGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGV-NLYVKNLDDSIDDERL 310
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ +G ITS + D + SKGFG +K LYVA AQ
Sbjct: 311 RKEFAPYGTITSAKVMTDGS-QSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 158 KKAERKAILRAQF 170
++ ERKAIL ++
Sbjct: 370 RREERKAILTNKY 382
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 222/488 (45%), Gaps = 109/488 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FGDI S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D +G S+GFG +++YV
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITST 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLR--- 235
K+M T+ G SKG C +A+AQ K ER + L
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 236 -----IMYAKQGPGLASTIFPVH---PTLYQRALQVYQAPD----FRHGGMIPNGFSPP- 282
M A GP L S P + PT+ Q + + + +P+ R + S P
Sbjct: 383 MQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPVRPAPQWASHQSRPP 442
Query: 283 ---PPSPLF-LMAPDSVTQYRGAMMNGHANFP-MPLM---LSNL---------------- 318
PP+PL + P + M P +PL ++N+
Sbjct: 443 QYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIM 502
Query: 319 -QKPSYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
P Y Y QP A + +S+L A E+K ILG+R
Sbjct: 503 RAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQILGER 562
Query: 374 LYPLVKKL 381
+YPL+ ++
Sbjct: 563 IYPLIHEM 570
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LY+ +L D+TE +L EKFS G I S+ + +D A S G+ Y+ Q +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYA----YINFQQPADAER 67
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ FE ++ + KN++D +D L FS G I S
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K++ + G S+G+ +T+ ++ M
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTM 158
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 211/485 (43%), Gaps = 108/485 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S K VVS E SKG+GFV
Sbjct: 60 MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK-VVSDENGSKGHGFV 118
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F + +R E F N+Y+KN D M
Sbjct: 119 HFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMD 178
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L F FG+I S+ + D G SKGFG K +YV
Sbjct: 179 DETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK +R L+ +FE++ ++++ Y KN++D +D+ L++ FS GTI+S
Sbjct: 239 GRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITST 298
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER ++L Y
Sbjct: 299 KVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQY 357
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQA---------------------PDFRHGGM--- 274
++ + S PV+P YQ A Y P R
Sbjct: 358 IQRMASVRSGPNPVNP--YQPASSSYSVAAVPQTQNCVPCCPSQIAQPRPSARWIAQGSR 415
Query: 275 ------IPNGFSPPPP-SPLFLMAPDS-----VTQYR----GAMMNGHANFPMPLMLSN- 317
+P P P S L + P S T +R A + G P +
Sbjct: 416 PHPFPNVPGAIHPAAPRSSLTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATATP 475
Query: 318 -LQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYP 376
P Y Y + Q L E ++ ++ T+P E K +LG+RL+P
Sbjct: 476 VHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERLFP 535
Query: 377 LVKKL 381
L++ +
Sbjct: 536 LIQAM 540
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 218/495 (44%), Gaps = 116/495 (23%)
Query: 1 MWSTPNSEARLSGIG----NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG 56
MWS + R SG+G N F+KNL +IDN L+ FS FG+I S KVV + G SKG
Sbjct: 85 MWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKG 143
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLD 112
YGFV + T E+A AIEK+ G + +++VG F R +R E F N+Y+KN
Sbjct: 144 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFG 203
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SK 149
+DM +E L + F +FG S+ + D +G SKGFG K
Sbjct: 204 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 263
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGT 202
+YV RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GT
Sbjct: 264 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 323
Query: 203 ISSVKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL 234
I+S K+M + G SKG C +A+AQ K ER ++L
Sbjct: 324 ITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 382
Query: 235 RIMYAKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFR 270
Y ++ + + PV P RA Q+ +P +
Sbjct: 383 TNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWT 442
Query: 271 HGGMIPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLS 316
G P+ F +P PP P P ++ R A + P P +
Sbjct: 443 AQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAA 502
Query: 317 NLQKPS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDER 366
P+ Y Y + P+ A +T + +SML + P E+
Sbjct: 503 AAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 562
Query: 367 KDILGQRLYPLVKKL 381
K +LG+RL+PL++ +
Sbjct: 563 KQMLGERLFPLIQAM 577
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 38/235 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 69
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R++ G N+++KNLD + + L + FS F
Sbjct: 70 ETLNFDVIKGRPVRIMWSQRDPSLRKSG---VGGGVGNIFIKNLDKSIDNKALYDTFSAF 126
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+G + ++V R + + ER+A
Sbjct: 127 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 185
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
L A+ KE +Y KN +++D+ LK F + G SVK+M + G SKG
Sbjct: 186 ELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 236
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD-KITRRSLG--YAYVNYQQPVDAKRA 68
Query: 165 ILRAQFERMRKERAELY----------------------KNINDEVDEIELKQYFSQCGT 202
+ F+ ++ + KN++ +D L FS G
Sbjct: 69 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGN 128
Query: 203 ISSVKIMRTDRGISKGH 219
I S K++ + G SKG+
Sbjct: 129 ILSCKVVCDENG-SKGY 144
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 139/248 (56%), Gaps = 33/248 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N FVKNL ID+ L++IFS FG I S KV G+SKGYGFV
Sbjct: 76 MFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
QY T ESA AI L G +++VG +RR DR F N+Y+KNL + +E+ L
Sbjct: 136 QYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDR---EVKFTNVYIKNLPTEFSEDDL 192
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
++F+ FG+ITS V+ +DA+G SK F G K LYV RAQ
Sbjct: 193 RQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQ 252
Query: 158 KKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK ERKA L+ +F R R + + LY KNI+D +++ LK+ F + G ++S K+M
Sbjct: 253 KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMV 312
Query: 211 TDRGISKG 218
RG SKG
Sbjct: 313 DARGRSKG 320
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL + L Q F+ FG+I S+ V+ +G SK +GFV + PE A++A+EK
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 236
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + LYVG ++ +R E + F NLY+KN+DD + +E L
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
+ F EFG++ S + DA G SKG G K LYV AQ
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 356
Query: 159 KAERKAILRAQF 170
K ERKA+L A F
Sbjct: 357 KEERKAMLMAHF 368
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 30/231 (12%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +LA T+D +LH +FS+ + + +V G S GYG+V + + + A A+E L
Sbjct: 5 YVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEALN 64
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P +R++ R NL+VKNL+ ++ + L E FS FG I
Sbjct: 65 FTPLIGKYIRVMFSNRDPSLRKSGRA-------NLFVKNLEPNIDSKNLYEIFSSFGAIL 117
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA-----------ERKAILRAQFERMRKER--A 178
S ++ D+ G SKG+G V Y +A RK + R +E
Sbjct: 118 SCKVATDSAGQSKGYGF-VQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFT 176
Query: 179 ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKR 228
+Y KN+ E E +L+Q F+ G I+S +MR G SK C K+
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASK--CFGFVNFKK 225
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 203/474 (42%), Gaps = 102/474 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G S+G+ FV
Sbjct: 131 MWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + +R ++ + F N+++KNL+ + T
Sbjct: 191 HYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFT 250
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L + F FG+I S +S +G SKGF K LYV
Sbjct: 251 QKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYV 310
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER LR E R E LY KNI+DE D+ L+ F GTI+S
Sbjct: 311 GRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSA 370
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+MR D+G S+G C +++AQ K R L
Sbjct: 371 KVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQM 430
Query: 235 ------RIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFR-HGGMIPNGFSPP----- 282
R+ YA GL + +Y + Y P GG++ +PP
Sbjct: 431 QQRNAQRLQYAAAN-GLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPPMMGAR 489
Query: 283 ----PPS-------PLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPR 331
PPS P+ M P G G N+P+ N + P+ P P
Sbjct: 490 PGRYPPSGQPGAPVPMGYMPPGGA----GGNYPGMPNYPV-RPAGNARPPTAARPNGSPS 544
Query: 332 A-------GQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
GQ A +G AA + L SP E++ +LG+ +YPL+
Sbjct: 545 GAQQGLPRGQVPARPQGDGAQAAAGQPRLTAQALARASPGEQRQMLGEAIYPLI 598
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 220/480 (45%), Gaps = 112/480 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L + FS+FGKI S+ + +D +G S+GFG ++LYV
Sbjct: 204 ERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ F+ G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLM 290
++ P L S P L Q+P + G + PPP
Sbjct: 383 IQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPPV----QPPPRWTAQPP 438
Query: 291 APDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRA-GQAAANNLTNG------ 343
P + R A ++ + P +S+ ++ S + P P+ G A T G
Sbjct: 439 RPSCASVVRPAAVSRRPSVP----ISSSRQVSIHVPRPVPQTQGVANIGTQTTGPGVMGC 494
Query: 344 --------NHRAAASNEN----------------LSSMLVATSP-DERKDILGQRLYPLV 378
H+ ++ N L++ ++A +P E+K ++G+RLYPL+
Sbjct: 495 ATPSGPLLTHKCCSATHNSPRVQEPGVRVPRQEPLTASVLAAAPLHEQKQMIGERLYPLI 554
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
I S K++ D G S+G +T + +R M
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTM 158
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 142/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN ++KNL IDN LH+ FS FG+I S KV G S+G+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
+ A DAIE + G + E+YV + + DR ++E + F N+YVKN+D + +
Sbjct: 172 HFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETS 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + FS++GKITS V+ KD+ G +GFG + LYV
Sbjct: 232 QEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ Q+E R E+ Y KN++D +D+ +LK F+ GTI+SV
Sbjct: 292 GRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSV 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M+ + G S+G T E T
Sbjct: 352 KVMKDEAGSSRGFGFVCFSTPEEAT 376
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + Q+FSK+G I S+ + EGK +G+GF+ + +A A+++L
Sbjct: 220 NIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDEL 279
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
+ LYVG ++ +R QE NL++KNLDD + +E L
Sbjct: 280 NESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLK 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
++F+ FG ITS+ + KD G+S+GFG K LYVA AQ+
Sbjct: 340 DEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R+ L Q +
Sbjct: 400 KEVRRNQLAQQIQ 412
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQLN 100
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ +GS N+Y+KNL + + L E FS FG I
Sbjct: 101 YTLIKGKPCRIMWSQRDPSLRK-----KGSG--NIYIKNLHPAIDNKSLHETFSTFGNIL 153
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D NG S+GFG + +YVA K +R++ L
Sbjct: 154 SCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKL-- 211
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E ++ + +Y KNI+ E + E +Q FS+ G I+S + + G +G
Sbjct: 212 --EEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRG 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N F+KNL +ID+ KL F+ FG I S KV+ + G S+G+GFV +STPE A
Sbjct: 317 AKYQGV-NLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQLVAGKPLYVAIAQRKEVR 403
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 82 RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-N 140
++E P ++ + +S +LYV LD ++E +L + FS G ++S+ + +DA
Sbjct: 16 KIEEQTAPTTTESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAIT 75
Query: 141 GTSKGFGSKVLYVARAQKKAERKAILRAQFERM-----------------RKERAELY-K 182
TS G+ YV +A RKAI + + + +K +Y K
Sbjct: 76 NTSLGYA----YVNFHDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIK 131
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
N++ +D L + FS G I S K+ D G+S+G
Sbjct: 132 NLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRG 167
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 171/353 (48%), Gaps = 87/353 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D +G SKGFG K +YV
Sbjct: 204 DEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMA 291
++ +AS +P L N + P PPS F+ A
Sbjct: 383 MQR---MASVRAVPNPVL--------------------NPYQPAPPSGYFMAA 412
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMM-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 145/252 (57%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E F N+YVKNL DM
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK S+ + +D+NG S+GFG ++LYV
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER+ L+ +FE+M++ER Y KN++D +++ LK+ FS G I+S
Sbjct: 264 GRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ SKG
Sbjct: 324 KVM-TESSHSKG 334
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 101/201 (50%), Gaps = 38/201 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR G N +VKNL +D L +FS+FG QS KV+ G+S+G+GF+ + E A
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++ + G V LYVG +RA+R E F NLYVKNLDD
Sbjct: 245 QKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L E FS +G ITS + +++ SKGF G+K L
Sbjct: 305 INDDRLKEVFSTYGVITSAKVMTESS-HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQFER 172
YVA AQ+K ERKAIL Q+ R
Sbjct: 364 YVALAQRKEERKAILTNQYRR 384
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
G S ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 HGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ + +D L FS
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G+I S K++ + G
Sbjct: 123 GSILSSKVVYNEHG 136
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 223/470 (47%), Gaps = 95/470 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E F N+YVKNL ++
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FG + S+ + +D+NG S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER++ L+ +FE+M++ER Y KN++D +++ LK+ FS G I+S
Sbjct: 264 GRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSP--------PP---PS 285
++ P L+S P L QA + G + P P PP P
Sbjct: 383 RRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSTCPP 442
Query: 286 PLFLMAPDSVTQYRGAMMNG----HANFPMPLMLSNL---------QKPSYNYPISQPRA 332
++ P S TQ+ + G + P + N+ + S + P
Sbjct: 443 AASVVQPLSTTQHPCIHLRGASQVSSQVPHTQRVVNIGTQTTGPGGEGSSIPGQLLVPHR 502
Query: 333 GQAAANNLTNGNHRAAA---SNENLS-SMLVATSPDERKDILGQRLYPLV 378
G +A ++ +G +A ++ L+ SML A E+K ++G+RLY L+
Sbjct: 503 GTSAVHS-AHGVQESAVYVPGHQPLTVSMLAAAPLHEQKQMIGERLYSLI 551
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L+++FS G+I S +V +S GY ++ + P E AL
Sbjct: 10 LSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M + P +R+ S N+++KNL++ + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSHRDPGLRK-------SGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + + +G S+GFG A +KA +RK + F+ +K
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV-GHFKSRQKRE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AEL KN++ VDE L+ FSQ G + SVK+MR G S+G
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG 232
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
G S ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 HGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ + +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G+I S K++ + G
Sbjct: 123 GSILSSKVVYNEHG 136
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 201/451 (44%), Gaps = 90/451 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ID+ L+ FS FG+I S KVV SKG+GFV
Sbjct: 84 MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Y T ESA AI K+ G + +++VGPF +R Q F N++ KNL +D+ +
Sbjct: 144 HYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQ 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L E ++G+IT++ I D G SKGFG K +Y RA
Sbjct: 204 LKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRA 263
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG- 214
QKK ER+A L+ FE + + LY KNI+D +D +L++ FSQ GTI+S +M+ D+
Sbjct: 264 QKKIEREAELKHTFE-TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKAT 322
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA------LQVYQAPD 268
SKG E T + M G P++ L QR L++
Sbjct: 323 TSKGFGFVCYTAPDEATRAVTEMN-----GRMIGTKPLYVALAQRKDIRRAQLEMQHQQK 377
Query: 269 FRHG---------GMIPNGFSPPPPSPLFL---MAPDSVTQYRGAMMNGHANFPMPLMLS 316
F+ G G P F+P P +P + M P R NG P+ +
Sbjct: 378 FKTGIRQQMPPTYGSGPVFFTPAPVNPQVVYQQMMP------RPRNWNGQ-----PVGVP 426
Query: 317 NLQKPSYNYPISQPRAG---QAAANNLTNG-----------------------NHRAAAS 350
Q + NY QPR Q NG +AA+S
Sbjct: 427 QGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPVQQQTTLDVAQTQQAASS 486
Query: 351 NE---NLSSMLVATSPDERKDILGQRLYPLV 378
E NL S++ S D++ LG+ LYPL+
Sbjct: 487 AESALNLQSIINLPSRDQQNVALGEHLYPLI 517
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 146/263 (55%), Gaps = 40/263 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA +IEK+ G + +++VG FI R +R +E F N+YVKN D++T
Sbjct: 136 HFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELT 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F ++G ITS + N S+GFG KVLY
Sbjct: 196 DESLKEMFEKYGTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELNGKELGDGKVLY 254
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ L+ +FE+++ ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 255 VGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITS 314
Query: 206 VKIMRTDRGISKGH---CMAIAQ 225
K+M + G SKG C + A+
Sbjct: 315 AKVM-LEEGRSKGFGFVCFSAAE 336
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 41/203 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + + L ++F K+G I S +V++ +E KS+G+GFV + PESA A+++L
Sbjct: 184 NVYVKNFGDELTDESLKEMFEKYGTITSHRVMI-KENKSRGFGFVAFENPESAEVAVQEL 242
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + + LYVG ++ +R E F NLYVKNLDD + +E L
Sbjct: 243 NGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERL 302
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++FS FG ITS + + G SKGFG SK LYVA AQ
Sbjct: 303 RKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQ 361
Query: 158 KKAERKAILRAQF-ERMRKERAE 179
+K +RKA L +Q+ +RM R +
Sbjct: 362 RKEDRKAHLASQYMQRMANMRMQ 384
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL +ID+ +L + FS FG I S+KV++ +EG+SKG+GFV +S E A
Sbjct: 282 RYQGV-NLYVKNLDDSIDDERLRKEFSPFGTITSAKVML-EEGRSKGFGFVCFSAAEEAT 339
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ DR
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQRKEDR 366
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVV-TRRSLG--YAYVNFQQPADAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 60 LDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGH 219
K+ + ++G SKG+
Sbjct: 120 KVAQDEKGNSKGY 132
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 134 MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+++++T
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG++TS +++D G ++GFG + LYV
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L+ FS+ G I+S
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSA 373
Query: 207 KIMR 210
K+MR
Sbjct: 374 KVMR 377
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 84/138 (60%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + + ++F+KFG++ SS + QEGK++G+GFV ++T E+A A+++L
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDEL 301
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLR 361
Query: 122 EKFSEFGKITSLVISKDA 139
FSE+G ITS + +D+
Sbjct: 362 AMFSEYGPITSAKVMRDS 379
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTADGEKALEE 120
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRK-------TGAGNIFIKNLDAAIDNKALHDTFAAFGN 173
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K +YV K +R++
Sbjct: 174 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN+EV + E ++ F++ G ++S + R G ++G
Sbjct: 232 --KFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRG 282
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 153 VARAQKKAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + +RK A KN++ +D L F+ G I S K+
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVA 180
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 181 QDEHGNSKGY 190
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 164/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ G S+GY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E F N+Y+KN D+M
Sbjct: 143 HFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D++G SKGFG ++L+V
Sbjct: 203 DERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE+++ ER A+LY KN+++ +D+ +L++ FS G+IS V
Sbjct: 263 GRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + E T + M G L S P++ L Q+
Sbjct: 323 KVMQ-EEGRSKGFGLICFSSAEEAT---KAMTEMNGRILGSK--PLNIALAQK 369
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTK 227
D G S+G+ Q +
Sbjct: 131 SDDHG-SRGYAFVHFQNQ 147
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 51/335 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--ALQVY 264
K+M + G S+G + E T + M G+ P++ +L R Q Y
Sbjct: 324 KVM-MEGGRSRGFGFVCFSSPEEATKAVTEMN-----GIIVATKPLYVSLAHRKEERQAY 377
Query: 265 QAPDF--RHGGM--IP----NGFSPPPPSPLFLMA 291
++ R G+ +P N + P PPS F+ A
Sbjct: 378 LTNEYMQRMAGVRAVPNPVINPYQPAPPSGYFMAA 412
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 215/491 (43%), Gaps = 115/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D G S+GFG +++YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLR--- 235
K+M T+ G SKG C +A+AQ K ER + L
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 236 -----IMYAKQGPGL------ASTIFPVHPTLYQRAL-------QVYQAPDFRHGGMIPN 277
M A GP L A+ P P R V QAP + P
Sbjct: 383 MQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPP 442
Query: 278 GFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK----------------- 320
+ PP+PL P + M A+ +P + + Q+
Sbjct: 443 QYQ--PPAPLMRAVPPRRMSSNISTMK-QASTQVPRVAPHSQRVANIGTQTAGARAQVNP 499
Query: 321 ------PSYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDIL 370
P Y Y + QP + +S L + P E+K +L
Sbjct: 500 SIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTASSLASAPPQEQKQML 559
Query: 371 GQRLYPLVKKL 381
G+RLYPL+ ++
Sbjct: 560 GERLYPLIHEM 570
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D A S G+ Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN+++ +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
G I S K++ + G S+G+ +T+ ++ M
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTM 158
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 147/252 (58%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN FVKNL ++DN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +A AIE++ G + ++V PF R DR E S F N+Y+KN DDM
Sbjct: 143 HFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSRASEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L FS +GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+M+KER +LY KN++D VD+ +L++ FS G+I+ V
Sbjct: 263 GRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSITRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G S+G
Sbjct: 323 KVMKEE-GYSRG 333
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 15/153 (9%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R S N ++KN +D+ +L +FS++G S KV+ GKSKG+GFV + + E+A
Sbjct: 184 SRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAA 243
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDD 114
A+E++ G + ++VG ++ +R E LYVKNLDD
Sbjct: 244 KRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDT 303
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L ++FS FG IT + + K+ G S+GFG
Sbjct: 304 VDDEQLRKEFSSFGSITRVKVMKE-EGYSRGFG 335
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ +VKNL T+D+ +L + FS FG I KV+ +EG S+G+G + +S+PE A
Sbjct: 289 RCQGV-KLYVKNLDDTVDDEQLRKEFSSFGSITRVKVM-KEEGYSRGFGLICFSSPEEAA 346
Query: 70 DAIEKLQG 77
A+ ++ G
Sbjct: 347 KALTEMNG 354
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKK--- 159
+LYV +L + TE++L KFS G + S+ I +D A G+ L +A AQ+
Sbjct: 11 SLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALDT 70
Query: 160 ---------------AERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTI 203
++R A LR R ++ KN++ VD L ++FS G I
Sbjct: 71 MNFDVIKGRPIRLMWSQRDACLR------RSGIGNVFVKNLDRSVDNKTLYEHFSGFGKI 124
Query: 204 SSVKIMRTDRGISKGHCMAIAQTK 227
S K+M D+G SKG+ Q++
Sbjct: 125 LSSKVMSDDQG-SKGYAFVHFQSQ 147
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 135/251 (53%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +I+ +L+ FS FG I S K+V+ + G+SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ E A AIEK+ + +YVG FI + +R + FNNLYVKN + E
Sbjct: 147 HFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E FSEFG+I S + KD G SKGFG +VLY AR
Sbjct: 207 KLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCAR 266
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ R ER Y KN++D +D+ L++ FS G+I+S K
Sbjct: 267 AQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAK 326
Query: 208 IMRTDRGISKG 218
+M+ SKG
Sbjct: 327 VMKDANNRSKG 337
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 112/211 (53%), Gaps = 39/211 (18%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S+AR N +VKN DN KL ++FS+FG+I+S+ V+ EGKSKG+GFV Y P+
Sbjct: 184 SQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPD 243
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSFN---NLYVKNL 111
A +A+ + G +E LY R+ +R +E S++ NLYVKNL
Sbjct: 244 HAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNL 303
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GS 148
DD++ ++ L E FS G ITS + KDAN SKGF GS
Sbjct: 304 DDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGS 363
Query: 149 KVLYVARAQKKAERKA-ILRAQFERMRKERA 178
K LYVA AQ+K +R+A ++ +R+ + RA
Sbjct: 364 KPLYVALAQRKEDRRAKLIEEHQQRLAQYRA 394
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 43/257 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAI---- 72
+V +L + + L FS+ G + S++V + S GYG+V + P+ A A+
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVLN 75
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
E L G + M P +R++ + N+++KNLD + ++ L + FS FG+I
Sbjct: 76 YEPLMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR- 167
S I D NG SKG+G +V+YV + K ERK+ R
Sbjct: 129 SCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARK 188
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN E D +LK+ FS+ G I S +M+ + G SKG
Sbjct: 189 VKFNNL------YVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDP 242
Query: 228 RERTSYLRIMYAKQGPG 244
+ +R M+ K+ G
Sbjct: 243 DHAENAVRTMHGKEIEG 259
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQ 157
+G ++LYV +L +++ L KFSE G + S + +D A S G+G YV
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYG----YVNFED 63
Query: 158 KKAERKAILRAQFE----------------RMRKE-RAELY-KNINDEVDEIELKQYFSQ 199
K +A+ +E +RK + ++ KN++ +++ EL FS
Sbjct: 64 PKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSF 123
Query: 200 CGTISSVKIMRTDRGISKGH 219
G I S KI+ + G SKG+
Sbjct: 124 FGRILSCKIVMDENGQSKGY 143
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 211/485 (43%), Gaps = 108/485 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S K VVS E SKG+GFV
Sbjct: 85 MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK-VVSDENGSKGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F + +R E F N+Y+KN D M
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L F FG+I S+ + D G SKGFG K +YV
Sbjct: 204 DETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK +R L+ +FE++ ++++ Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITST 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQA---------------------PDFRHGGM--- 274
++ + S PV+P YQ A Y P R
Sbjct: 383 IQRMASVRSGPNPVNP--YQPASSSYSVAAVPQTQNCVPCCPSQIAQPRPSARWIAQGSR 440
Query: 275 ------IPNGFSPPPP-SPLFLMAPDS-----VTQYR----GAMMNGHANFPMPLMLSN- 317
+P P P S L + P S T +R A + G P +
Sbjct: 441 PHPFPNVPGAIHPAAPRSSLTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATATP 500
Query: 318 -LQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYP 376
P Y Y + Q L E ++ ++ T+P E K +LG+RL+P
Sbjct: 501 VHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERLFP 560
Query: 377 LVKKL 381
L++ +
Sbjct: 561 LIQAM 565
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYAS----VNFEQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ F+ ++ + + KN+N +D L FS
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K++ + G SKGH
Sbjct: 123 GNILSCKVVSDENG-SKGH 140
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 176/362 (48%), Gaps = 80/362 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+++ G + ++YVG FI R +R +E F N+YVKN +DMT
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L + F ++G ITS + +G S+GFG K +Y
Sbjct: 205 DDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITS 324
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K +R ++L
Sbjct: 325 AKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQ 383
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
Y ++ LA+ Q+ Q++Q G N F P P P P + Q
Sbjct: 384 YMQR---LANMRM-------QQMGQIFQP------GGAGNYFVPTIPQPQRFYGPAQMAQ 427
Query: 298 YR 299
R
Sbjct: 428 IR 429
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 163/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DDM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D +G SKGFG ++++V
Sbjct: 203 DERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+ ++ER +LY KN++D +D+ +L++ FS G+IS V
Sbjct: 263 GRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + E T + M G L S P++ L Q+
Sbjct: 323 KVMQ-EEGQSKGFGLICFSSPEEAT---KAMTEMNGQILGSK--PLNIALSQK 369
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE++L +KFS G + S+ I +D T + G YV Q +KA
Sbjct: 11 SLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLV-TRRSLG--YAYVNFLQLADAQKA 67
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + L KN++ +D L ++FS G I S
Sbjct: 68 LDTMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS 127
Query: 207 KIMRTDRGISKGH 219
K+M D+G SKG+
Sbjct: 128 KVMSDDQG-SKGY 139
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 M------------------QRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 141/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN ++KNL IDN LH+ FS FG+I S KV + G S+G+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
+ A DAIE + G + E+YV + + DR ++E + F N+YVKN+D + +
Sbjct: 172 HFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETS 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F ++GKITS V+ KD+ G +GFG + LYV
Sbjct: 232 QEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D+ +LK+ F+ GTI+S
Sbjct: 292 GRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR + G S+G T E T
Sbjct: 352 KVMRDETGNSRGFGFVCFSTPEEAT 376
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + ++F K+G I S+ + EGK +G+GFV + +A A+++L
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
+ +LYVG ++ +R+QE NL+VKNLDD + +E L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS + +D G S+GFG K LYVA AQ+
Sbjct: 340 EEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R+ L Q +
Sbjct: 400 KEVRRNQLAQQIQ 412
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L T+ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLN 100
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + R ++GS N+Y+KNL + + L E FS FG I S ++
Sbjct: 101 YTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D NG S+GFG + +YVA K +R++ L E +
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKL----EEV 214
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ + +Y KNI+ E + E ++ F + G I+S + + G +G
Sbjct: 215 KAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG 260
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL +ID+ KL + F+ FG I S+KV+ + G S+G+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKEVR 403
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 82 RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-N 140
++E P ++ + +S +LYV L+ ++E +L + FS G ++S+ + +DA
Sbjct: 16 KIEEQTAPTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAIT 75
Query: 141 GTSKGFGSKVLYVARAQKKAERKAILRAQFERM-----------------RKERAELY-K 182
TS G+ YV +A KAI + + + +K +Y K
Sbjct: 76 NTSLGYA----YVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIK 131
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
N++ +D L + FS G I S K+ + G+S+G
Sbjct: 132 NLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRG 167
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 148/272 (54%), Gaps = 36/272 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV + G+SKGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +SA +IEK+ G + +++VG F+ R DR +E + N+Y+KN+D+++
Sbjct: 136 HFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLYTNVYIKNIDENVN 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ L E F ++G ITS + +G+S+GFG K Y
Sbjct: 196 DKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+ + ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 256 VGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITS 315
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M D G SKG + E T + M
Sbjct: 316 AKVM-MDDGRSKGFGFVCFSSPEEATKAVTDM 346
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 39/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ +L ++F K+G I S KV+ +G S+G+GFV + PE A A+ +L
Sbjct: 184 NVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTEL 243
Query: 76 QG-ATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E YVG ++A+R QE F NLYVKNLDD + +E L
Sbjct: 244 HGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDERL 303
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++FS FG ITS + D +G SKGFG +K LYVA AQ
Sbjct: 304 RKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALAQ 362
Query: 158 KKAERKAILRAQF 170
+K +RKA L +Q+
Sbjct: 363 RKEDRKAHLDSQY 375
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 33/256 (12%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY---STPESAL 69
+ + +V +L S + L + FS G + S +V +S GY +V + + E AL
Sbjct: 1 MASLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERAL 60
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + L+G + M P +R+ S N+++KNLD + + + + FS F
Sbjct: 61 DTMNFDILKGRPMRIMWSQRDPSLRK-------SGVGNVFIKNLDRSIDNKAMYDTFSAF 113
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQFER 172
G I S +++D G SKG+G + ++ ++ K + R E+
Sbjct: 114 GNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREK 173
Query: 173 MRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
++A+LY KNI++ V++ EL + F + G+I+S K+M D G S+G +
Sbjct: 174 ELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDP 233
Query: 228 RERTSYLRIMYAKQGP 243
E + ++ K+ P
Sbjct: 234 EEAEKAVTELHGKESP 249
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL TID+ +L + FS FG I S+KV++ +G+SKG+GFV +S+PE A
Sbjct: 283 RYQGV-NLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEAT 340
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ + G V LYV R+ DR
Sbjct: 341 KAVTDMNGRIVGTKPLYVALAQRKEDR 367
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 34/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV V + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T ++A AI+ + G + +++VG I + DR+ + ++F N+YVKN+D + T
Sbjct: 189 HYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETT 248
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F ++G+ITS ++ D G +GFG + LYV
Sbjct: 249 DDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYV 308
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R+E++ Y KN+ DE+D+ EL++ F G I+S
Sbjct: 309 GRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSA 368
Query: 207 KIMRTDRGISK 217
K+MR + K
Sbjct: 369 KVMRDTTPLDK 379
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 36/247 (14%)
Query: 1 MWSTPNSEARLSGIGNA---FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKG 56
+ TP S A + N+ +V L ++ L ++FS G + S +V +S G
Sbjct: 38 IGETPTSAAPTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLG 97
Query: 57 YGFVQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
Y +V Y++ A+E+L +G M P +R+ + N+++KNL
Sbjct: 98 YAYVNYNSAADGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNL 150
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------E 161
D + + L + F+ FG I S ++ D +G SKG+G + A +A E
Sbjct: 151 DAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNE 210
Query: 162 RKAIL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
+K + ++FE M+ +Y KNI+ E + E ++ F + G I+S +
Sbjct: 211 KKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHD 270
Query: 212 DRGISKG 218
D+G +G
Sbjct: 271 DQGKVRG 277
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F K+G I S+ + +GK +G+GFV + E A A+++L
Sbjct: 237 NIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDEL 296
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ +R +E + + NLYVKNL D++ +E L
Sbjct: 297 NDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELR 356
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSK 149
+ F +G ITS + +D K G++
Sbjct: 357 KIFEPYGAITSAKVMRDTTPLDKVEGAE 384
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS G++ S+ + +DA N S G + L
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 116 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA 175
Query: 210 RTDRGISKGH 219
+ G SKG+
Sbjct: 176 VDEHGNSKGY 185
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 206/448 (45%), Gaps = 81/448 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 126 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D + +
Sbjct: 186 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYS 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE L + F+ +G ITS+ + KDA G SKGFG + +YV
Sbjct: 246 EEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 306 GRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
++M + G SKG + E T + M + G P++ L QR Q
Sbjct: 366 RVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGK-----PLYVALAQRKDVRRSQ 420
Query: 263 VYQAPDFRH---------GGMIPNGFSPP---------PP-----SPLFLMAPDSVTQYR 299
+ Q R+ G IP F PP PP +P P + + R
Sbjct: 421 LEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMR-R 479
Query: 300 GAMMNGHANFPMPLMLSNLQK-PSYNYPISQPRA-----GQAAANN---LTNGNHRAAAS 350
G G +P P N Q P Y P P+A GQ N N
Sbjct: 480 GQPFGGPEQWPRP--GPNGQPVPVYGIP---PQAYSDFNGQNIRQQRGYYPNRNQNKGRQ 534
Query: 351 NENLSSMLVATSPDERKDILGQRLYPLV 378
+L++++ + PD++K ILG+ LYP +
Sbjct: 535 QRDLAAIIASAPPDQQKRILGEELYPKI 562
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKMEDGEKAIEE 112
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L + +E + + D S N+++KNL + + L + FS FGKI S
Sbjct: 113 LNYSPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + ++V + K +R+ ++FE
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE----SKFE 226
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++ +Y KNI+ E E +LK+ F+ G I+S+ + + G SKG
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKG 274
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 64/307 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++GK S+ + D G S+GFG K ++V
Sbjct: 204 DERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE +++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGL 245
++ G+
Sbjct: 383 MQRIAGM 389
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV +Q +A
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFSQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 168/344 (48%), Gaps = 52/344 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D NG SKGFG K ++V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M ++R Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---- 262
K+M + G SKG + E T + M G P++ L QR +
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAH 377
Query: 263 -----VYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
+ + R + N + PPP S + MA Q R A
Sbjct: 378 LTNQYMQRMASVRVPNPVINPYQPPPSS--YFMAAIPPAQNRAA 419
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 210/474 (44%), Gaps = 107/474 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL ID+ L+ FS FG+I S K+ + G SKGYGFV
Sbjct: 98 MYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ--EGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +YVG F R+ DR + FNN+YVKNL + +T++
Sbjct: 158 QFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+G ITS V+ +D +G SK FG K YV +
Sbjct: 218 DLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGK 277
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
A KK ER+ L+ + E+ KE A LY KN++D V + +L + FS+ GT++S KI
Sbjct: 278 ALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKI 337
Query: 209 MRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMYAK 240
+R +GIS+G +A AQ K ER + L+ +++
Sbjct: 338 LRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQ 397
Query: 241 QGPGLASTIFPVHP------------TLYQRALQVY--QA----PDFRHGGMIPNGFSPP 282
P + I P P +Y +A + QA P GM P G
Sbjct: 398 VRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGG---- 453
Query: 283 PPSPLFLMAPDSVTQYRGAMMNGHANFPM-------PLMLSNLQKPS--YNYPISQ---- 329
P P F M Q PM P+M + Y YP +
Sbjct: 454 APMPNFFMPMVQQGQQGQRPGGRRGASPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQG 513
Query: 330 -PRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
P G A + + L++ L P++++ +LG+ LYPLV+K++
Sbjct: 514 IPMPGVAGGTPM-----------QALATALANAPPEQQRTMLGEVLYPLVEKIE 556
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 47/232 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIE- 73
+V +L + + +L+ +F++ G + S ++ + SQ+ S GYG+V +S P A A++
Sbjct: 27 YVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQ--SLGYGYVNFSNPHDAAKAMDV 84
Query: 74 ----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L + M + P +R+ S N+++KNLD + + L + FS FG
Sbjct: 85 LNFTPLNNKPIRIMYSHRDPSVRK-------SGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER-KAI 165
I S I+ DA+G SKG+G K +YV Q+K +R A+
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 166 LRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A+F + KN+++ V + +LK F + GTI+S +MR G SK
Sbjct: 198 SNAKFNNV------YVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSK 243
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD D+T+ L + F++ G++ S+ I +D A+ S G+G YV + K
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYG----YVNFSNPHDAAK 80
Query: 164 AI------------LRAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
A+ +R + +RK A KN++ +D L FS G I S
Sbjct: 81 AMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 206 VKIMRTDRGISKGH 219
KI G+SKG+
Sbjct: 141 CKIAMDASGLSKGY 154
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F K GDI S+ + ++GKS+G+GFV Y E+A A++ L
Sbjct: 230 NIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ S + NLY+KNL+DD+ +E L
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ FG ITS + +DA
Sbjct: 350 DMFTPFGTITSAKVMRDA 367
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 4 TPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
TP S A +A +V L ++ L ++FS G + S +V +S GY +V
Sbjct: 35 TPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 94
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y++ E A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 95 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAI 147
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 166 L---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ ++FE M+ +Y KNI+ +V + E ++ F + G I+S I R ++G
Sbjct: 208 VGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGK 267
Query: 216 SKG 218
S+G
Sbjct: 268 SRG 270
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 200/437 (45%), Gaps = 62/437 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL I+N LH FS FG + S KV + G SKG+GFV
Sbjct: 126 MWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRAD---RIQEG-SSFNNLYVKNLDDDMT 116
Y + E+A AIE + G + E+YVGP + + D R QE ++ N++VKN D + T
Sbjct: 186 HYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTEST 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E F +G ITS+ + D+ G +KGFG K LYV
Sbjct: 246 EDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L ++E R E+ + Y KN+++ +D+ L++ F GTI+S
Sbjct: 306 GRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQA 266
K+M + G S+G T E T + M + + P +R+ Q+ Q
Sbjct: 366 KVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRS-QLAQQ 424
Query: 267 PDFRH--------GGMIPNGFSPP----------PPSPLFLMAPDSVTQYRGAMMNGHAN 308
R+ G IPN F P PP + + Q+ G G
Sbjct: 425 IQARNQMRMQQQAGPGIPNQFVQPIFYGQQPGMLPPGARVPPMGNQIPQFAGMPRPGP-- 482
Query: 309 FP---MPLMLSNLQK-PSYNYPI---SQPRAGQAAANNLTNGNHRAAASNENLSSMLVAT 361
FP P M N Q P Y P+ + P+ NN N N +L+++L
Sbjct: 483 FPQGQFPRMAPNGQPMPVYGQPVFNGNGPQQRGYYPNNRQNKNRNQKEEGNSLAAILPQL 542
Query: 362 SPDERKDILGQRLYPLV 378
+++K +LG+ LYP V
Sbjct: 543 PLEQQKRVLGEELYPKV 559
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 41/235 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAI 72
+ + +V L T+ L++ FS G + S +V K S GYG+V + + + A+
Sbjct: 51 LASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERAL 110
Query: 73 EKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E+L A ++ + + P +RR S N+++KNLD + + L + FS F
Sbjct: 111 EELNYAEIKGVRCRLMWSQRDPSLRR-------SGSGNIFIKNLDPAIENKTLHDTFSSF 163
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
GK+ S ++ D NG SKGFG + +YV K +R+
Sbjct: 164 GKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRE- 222
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++F+ M K ++ KN + E E EL++ F G I+S+ + G +KG
Sbjct: 223 ---SRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKG 274
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARA 156
Q + +LYV LD +TE L E FS G + S+ + +DA S G+G YV
Sbjct: 46 QASETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYG----YVNFH 101
Query: 157 QKKAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFS 198
+ A +A+ + ++ R L KN++ ++ L FS
Sbjct: 102 SQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFS 161
Query: 199 QCGTISSVKIMRTDRGISKG 218
G + S K+ + G SKG
Sbjct: 162 SFGKVLSCKVATDENGNSKG 181
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F K GDI S+ + ++GKS+G+GFV Y E+A A++ L
Sbjct: 230 NIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ S + NLY+KNL+DD+ +E L
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ FG ITS + +DA
Sbjct: 350 DMFTPFGTITSAKVMRDA 367
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 4 TPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
TP S A +A +V L ++ L ++FS G + S +V +S GY +V
Sbjct: 35 TPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 94
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y++ E A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 95 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAI 147
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 166 L---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ ++FE M+ +Y KNI+ +V + E ++ F + G I+S I R ++G
Sbjct: 208 VGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGK 267
Query: 216 SKG 218
S+G
Sbjct: 268 SRG 270
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 121 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 180
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D+T
Sbjct: 181 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 240
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F + G ITS I++D G S+GFG + LYV
Sbjct: 241 DDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYV 300
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 301 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 360
Query: 207 KIMR 210
K+MR
Sbjct: 361 KVMR 364
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + +F K GDI S+ + +GKS+G+GFV Y E+A A+E L
Sbjct: 229 NIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETL 288
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ S + NLY+KNL+DD+ +E L
Sbjct: 289 NDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 348
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ FG ITS + +DA
Sbjct: 349 DMFTPFGTITSAKVMRDA 366
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS G + S +V +S GY +V Y++ E A+E+L
Sbjct: 50 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELN 109
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 110 YTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAIDNKALHDTFAAFGNIL 162
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D +G SKG+G A A A E+K + ++FE
Sbjct: 163 SCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 222
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ +V + E + F + G I+S I R D+G S+G
Sbjct: 223 MKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRG 269
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 48 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 107
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 108 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 167
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 168 QDEHGNSKGY 177
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK ER+A L+ FE+++KER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 263 ARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 323 KVMQ-EEGQSKG 333
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 3 STPNSEARL----SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYG 58
S + EA L S N ++KN +D+ +L +FSK+G S KV+ GKSKG+G
Sbjct: 174 SRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFG 233
Query: 59 FVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFN 104
FV + + E+A A+E++ G + ++V ++ +R E G
Sbjct: 234 FVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVV 293
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
LYVKNLDD + +E L +FS FG I+ + + ++ G SKGFG
Sbjct: 294 KLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFG 335
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+VKNL TID+ KL FS FG I KV+ +EG+SKG+G + +S+PE AL A+ ++ G
Sbjct: 296 YVKNLDDTIDDEKLRNEFSSFGSISRVKVM-QEEGQSKGFGLICFSSPEDALKAMTEMNG 354
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L KFS G + S+ I +D +S G+ L++A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
I++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 210 RTDRGISKGH 219
D+G SKG+
Sbjct: 131 SDDQG-SKGY 139
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 145/266 (54%), Gaps = 27/266 (10%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++D+ L FS FG+I S KVV + SKG+GFV
Sbjct: 82 MWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKGFGFV 141
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ-EGSSFNNLYVKNLDDDMTEEI 119
Y + +SA AI K+ G + +++VGPF +R Q + + N+YVKNL +D+ EE
Sbjct: 142 HYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEE 201
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + +GKIT+L I D SKGFG KV+YV RA
Sbjct: 202 LRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRA 261
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
QKK ER+A L+ +FE + + LY KNI+D +D +L+ F+ GTI+S K+MR D+
Sbjct: 262 QKKMEREAELKHKFE-TKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKST 320
Query: 216 -SKGHCMAIAQTKRERTSYLRIMYAK 240
SKG T E + + M+ +
Sbjct: 321 SSKGFGFVCYTTPDEASKAVAEMHGR 346
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 148/252 (58%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +EG S+GYGFV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG-SRGYGFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y +A AIE++ G + ++V F R DR E S F N+Y+KNL D+M
Sbjct: 143 HYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L FS++G+ S+ + KD NG SKGFG + ++V
Sbjct: 203 DEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE+M+KER A+LY KN+++ +D+ L++ FS G+I V
Sbjct: 263 GRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 323 KVMQ-EAGQSKG 333
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 3 STPNSEARL----SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYG 58
S + EA L S N ++KNL +D+ L IFSK+G S KV+ GKSKG+G
Sbjct: 174 SRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFG 233
Query: 59 FVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFN 104
FV + E+A +A+E++ G + ++VG ++ +R E
Sbjct: 234 FVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAA 293
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
LY+KNLD+ + +E L +FS FG I + + ++A G SKGFG
Sbjct: 294 KLYIKNLDETIDDETLRREFSSFGSICRVKVMQEA-GQSKGFG 335
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +L +D+TE++L KF+ G + S+ I +D + S G+ YV Q +K
Sbjct: 11 SLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYA----YVNFLQLDDAQK 66
Query: 164 AILRAQFE-------RMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISS 205
A+ F+ R+ + + Y KN++ +D L ++FS G I S
Sbjct: 67 ALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKILS 126
Query: 206 VKIMRTDRGISKGH 219
K+M + G S+G+
Sbjct: 127 SKVMSDEEG-SRGY 139
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
++KNL TID+ L + FS FG I KV+ + G+SKG+G + + +P
Sbjct: 296 YIKNLDETIDDETLRREFSSFGSICRVKVM-QEAGQSKGFGLICFFSP 342
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 208/452 (46%), Gaps = 92/452 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW+ N AR SG GN F+KNL IDN L+ FS FG I S KV ++G+S+GYGFV
Sbjct: 82 MWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYGFV 141
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDD-MTEE 118
+ E A AI+ + G + + + V F+ R +R Q+G ++ N+YVKNL D T +
Sbjct: 142 HFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATND 201
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVA 154
L + F +FG ITS ++KD N S+GFG + L+V
Sbjct: 202 DLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVG 261
Query: 155 RAQKKAERKAILRAQFERMRKERAELYKNIN-------DEVDEIELKQYFSQCGTISSVK 207
RA KK ER+ L+ +++R+ER E KN N ++V E L+ FS+ GTI+S+K
Sbjct: 262 RAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLK 321
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAP 267
IM + G S+G + E + ++ M+ G P++ L R + +
Sbjct: 322 IMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGK-----PLYVALALRKVDRQKQL 376
Query: 268 DFRHG--GMIPNGFSP---PPPS-----------PLFLM--------------APDSVTQ 297
R G +P G+ P PPP P+F+M AP
Sbjct: 377 ASRRTMPGQMPMGYLPFMMPPPQANMMRMGNRFPPMFMMQQQQQQQQQQQQQHAPGMNGN 436
Query: 298 YRGAMM------NGHANFPMPLMLSNLQKPSYNYPI---SQPRAGQAAANNLTNGNHRAA 348
RG NG P+ PS P+ S P A + AA N A
Sbjct: 437 MRGRGRGNPNKGNGRGRGQGPM-------PSQGQPMPMQSAPSAARVAAPAPNNNQDEFA 489
Query: 349 ASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
NL+ M A E+K++LG++L+PL+++
Sbjct: 490 ----NLAHMTDA----EQKNLLGEKLFPLIQQ 513
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 43/231 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + L++ FS+ G + S +V VS++ S GY +V Y A A+E+
Sbjct: 11 YVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQ--SLGYAYVNYQQHADAKHALEE 68
Query: 75 LQGATVER-----MELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L + M P RR S N+++KNL+ ++ + L + FS FG
Sbjct: 69 LNFEKIHDKPCRIMWAQRNPAARR-------SGAGNIFIKNLNKEIDNKALYDTFSAFGT 121
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERM------------RKER 177
I S ++ D G S+G+G +V +++ +KAI + + RKER
Sbjct: 122 ILSCKVAADEKGESRGYG----FVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKER 177
Query: 178 AE----LYKNI------NDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ Y NI + +LK+ F + GTI+S + + + S+G
Sbjct: 178 EQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRG 228
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV +L ++TE L E FS+ G + S+ + +DA + S G+ YV Q + A
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYA----YVNYQQHADAKHA 65
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ FE++ + + KN+N E+D L FS GTI S
Sbjct: 66 LEELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSC 125
Query: 207 KIMRTDRGISKGH 219
K+ ++G S+G+
Sbjct: 126 KVAADEKGESRGY 138
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 172/345 (49%), Gaps = 52/345 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG++ S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--ALQVY 264
K+M + G SKG + E T + M G P++ L QR Q Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATEPLYVALAQRKEERQAY 377
Query: 265 QAPDF-RHGGMIP-------NGFSPPPPSPLFLMAPDSVTQYRGA 301
++ + +P N + P PPS F MA TQ R A
Sbjct: 378 LTNEYMQRKASVPAVPNPVINPYQPAPPSGYF-MAAVPQTQNRAA 421
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 168/335 (50%), Gaps = 51/335 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG++ S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--ALQVY 264
K+M + G SKG + E T + M G P++ L QR Q Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAY 377
Query: 265 QAPDF-RHGGMIP-------NGFSPPPPSPLFLMA 291
++ + +P N + P PPS F+ A
Sbjct: 378 LTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAA 412
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 146/252 (57%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +EG SKGYGFV
Sbjct: 84 MWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y +A AIE++ G + L+V F R DR E + F N+Y+KN DDM
Sbjct: 143 HYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L FS++G+ S+ + KDA+G SK FG + ++V
Sbjct: 203 DESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+M+KER A+LY KN++D +D+ L++ FS G+I V
Sbjct: 263 GRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 323 KVMQ-EAGQSKG 333
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ L +FSK+G S KV+ GKSK +GFV + + ++A +A+E +
Sbjct: 191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDM 250
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G + ++VG ++ +R E LY+KNLDD + +E L
Sbjct: 251 NGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
++FS FG I + + ++A G SKGFG
Sbjct: 311 KEFSVFGSICRVKVMQEA-GQSKGFG 335
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +L +D+TE++L KF+ G + S+ I +D + S G+G YV Q +K
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYG----YVNFLQVGDAQK 66
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ F+ ++ + L KN++ +D L ++FS G I S
Sbjct: 67 ALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMS 126
Query: 206 VKIMRTDRGISKGHCMAIAQTKR 228
K+M TD SKG+ Q +R
Sbjct: 127 SKVM-TDEEGSKGYGFVHYQDQR 148
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
++KNL TID+ L + FS FG I KV+ + G+SKG+G + + +P
Sbjct: 296 YIKNLDDTIDDETLRKEFSVFGSICRVKVM-QEAGQSKGFGLICFFSP 342
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 145/486 (29%), Positives = 219/486 (45%), Gaps = 106/486 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M + G SKG C +A+AQ K ER +YL
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 235 -------RIMYAKQGP--GLASTIFPV---HPTLY--QRALQVYQAPDFRHGGMIPNGFS 280
R + ++ P G T P H Y + ++ +P + G P+ F
Sbjct: 383 MQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQ 442
Query: 281 PPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQKPS---- 322
P + P M P S ++ R A + P P + P+
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTV 502
Query: 323 --YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLYP 376
Y Y + P+ A +T + +SML + P ++K +LG+RL+P
Sbjct: 503 PRYKYAAGVRNPQQHLNAQPEVTMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFP 562
Query: 377 LVKKLK 382
L++ ++
Sbjct: 563 LIEAMR 568
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 148/285 (51%), Gaps = 32/285 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL ID+ L+ FS FG+I S K+ + G SKGYGFV
Sbjct: 98 MYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +YVG F R+ DR S+ FNN+YVKNL + +T++
Sbjct: 158 QFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDD 217
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+G ITS V+ +D +G SK FG K YV +
Sbjct: 218 DLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGK 277
Query: 156 AQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
A KK ER+ L+ + E+ KE A LY KN++D V + +L + FS+ GT++S KI
Sbjct: 278 ALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKI 337
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVH 253
+R +GIS+G T E T L M K G + P
Sbjct: 338 LRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 47/232 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIE- 73
+V +L + + +L+ +F++ G + S ++ + SQ+ S GYG+V +S P A A++
Sbjct: 27 YVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQ--SLGYGYVNFSNPHDAAKAMDV 84
Query: 74 ----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L + M + P +R+ S N+++KNLD + + L + FS FG
Sbjct: 85 LNFTPLNNKPIRIMYSHRDPSVRK-------SGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER-KAI 165
I S I+ DA+G SKG+G K +YV Q+K +R A+
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 166 LRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
A+F + KN+++ V + +LK F + GTI+S +MR G SK
Sbjct: 198 SNAKFNNV------YVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSK 243
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD D+T+ L + F++ G++ S+ I +D A+ S G+G YV + K
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYG----YVNFSNPHDAAK 80
Query: 164 AI------------LRAQFER----MRKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
A+ +R + +RK A KN++ +D L FS G I S
Sbjct: 81 AMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 206 VKIMRTDRGISKGH 219
KI G+SKG+
Sbjct: 141 CKIAMDASGLSKGY 154
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 163/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ G S+GY FV
Sbjct: 79 MWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFV 137
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ L+VG F R DR E F N+Y+KN D+M
Sbjct: 138 HFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMD 197
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++GK S+ + D++G SKGFG ++L+V
Sbjct: 198 DERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFV 257
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKKAER+A L+ FE+++ ER A+LY KN+++ +D+ +L++ FS G+IS V
Sbjct: 258 GRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKLRREFSSFGSISRV 317
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + E T + M G L S P++ L Q+
Sbjct: 318 KVMQ-EEGRSKGFGLICFSSAEEAT---KAMTEMNGRILGSK--PLNIALAQK 364
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 38/191 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 186 NVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEM 245
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDDMTEEILV 121
G + L+VG ++A+R E LY+KNLD+ + +E L
Sbjct: 246 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKLR 305
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
+FS FG I+ + + ++ G SKGF GSK L +A AQK
Sbjct: 306 REFSSFGSISRVKVMQE-EGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQK 364
Query: 159 KAERKAILRAQ 169
ERK +Q
Sbjct: 365 PXERKTFCISQ 375
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK- 163
+LYV +L D+TE++L +KFS G + S+ + G + L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSAVGPVLSITCHPRSLGYAY---VNFLQLADAQKALDTMN 67
Query: 164 -AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIMRT 211
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 68 FDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSD 127
Query: 212 DRGISKGH 219
D G S+G+
Sbjct: 128 DHG-SRGY 134
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 132 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 192 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 251
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 252 DEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLY 311
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 312 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 371
Query: 206 VKIMR 210
K+MR
Sbjct: 372 AKVMR 376
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 240 NIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEG 299
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 360 RELFSSYGNITSAKVMREA 378
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 137/246 (55%), Gaps = 34/246 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 138 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 197
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ +++T
Sbjct: 198 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVT 257
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F+ FG +TS +++D G S+GFG + LYV
Sbjct: 258 DDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++DEVD+ +L+Q F+ G I+S
Sbjct: 318 GRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSA 377
Query: 207 KIMRTD 212
K+MR +
Sbjct: 378 KVMRDN 383
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 15/144 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+A+ + + + +F+ FGD+ SS + QEGKS+G+GFV ++T E+A A++ L
Sbjct: 246 NIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDL 305
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ S + NLY+KNLDD++ +E L
Sbjct: 306 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLR 365
Query: 122 EKFSEFGKITSLVISKDANGTSKG 145
+ F++FG ITS + +D N T G
Sbjct: 366 QLFADFGPITSAKVMRD-NATESG 388
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+T A+E+L
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEELN 126
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 127 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 179
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D +G SKG+G K +YV K +R++
Sbjct: 180 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 235
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI +EV + E + F+ G ++S + R G S+G
Sbjct: 236 KFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRG 286
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 125 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 184
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLR 235
+ + G SKG+ +T + ++
Sbjct: 185 QDEHGNSKGYGFVHYETDEAASQAIK 210
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 217/491 (44%), Gaps = 115/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 261 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 320
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 321 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 379
Query: 239 AKQGPGLASTIFPV-------HPTLY-----------------QRALQVYQAPDFRHGGM 274
++ + + PV P+ Y + Q+ +P + G
Sbjct: 380 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQVAQLRPSPRWTAQGA 439
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 440 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 499
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 500 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 559
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 560 GERLFPLIQAM 570
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 222/475 (46%), Gaps = 99/475 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R +E S F N+Y+KN +D
Sbjct: 144 HFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F+ FG+ S+ + KD G S+GFG KV+YV
Sbjct: 204 DEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE ++++R + Y KN++D +D+ L++ F+ GTI+S
Sbjct: 264 GRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M TD S+G C +A+AQ + ER + L Y
Sbjct: 324 KVM-TDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLF------LMAP 292
++ L + P+ + YQ+A P R PN S P + L P
Sbjct: 383 MQRLATLRTMTSPIIDS-YQQAGYYMTVPQPR-SFYSPNAVSTMRALPRWTGQPHRLQGP 440
Query: 293 DSVTQ--YRGAMMNG---HANFPMPLMLSNLQKPS----------YNYPISQPRAGQAAA 337
++ RG+ A+ P ++S+ QK + P PR+GQ
Sbjct: 441 YTIVSGPRRGSTPIASVRQASTQAPNVISSAQKTNNIGTQTVGGRAELP-GVPRSGQYKY 499
Query: 338 NNLTNGNHRAAA----------SNENLSSMLVATSP-DERKDILGQRLYPLVKKL 381
++ + E L++ ++A +P ++K +LG+RLYPL+ L
Sbjct: 500 SSAVRNAQQVPGPVLEPSVYIQGQEPLTASMLAAAPLMDQKQLLGERLYPLISTL 554
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + SKGYGFV
Sbjct: 119 MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 179 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEIT 238
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ F FG+ITS +S D +G S+GFG S+ LYV
Sbjct: 239 DDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYV 298
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L+ F+ GTI+S
Sbjct: 299 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSA 358
Query: 207 KIMR 210
K+MR
Sbjct: 359 KVMR 362
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ I + + +F FG+I S+ + Q+GKS+G+GFV Y+ ESA A+ ++
Sbjct: 227 NIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEM 286
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 287 NEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLR 346
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ +G ITS + +DA
Sbjct: 347 DLFTPYGTITSAKVMRDA 364
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 216/491 (43%), Gaps = 115/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 261 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 320
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 321 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 379
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 380 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 439
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 440 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 499
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 500 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 559
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 560 GERLFPLIQAM 570
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 216/491 (43%), Gaps = 115/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 261 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 320
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 321 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 379
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 380 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 439
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 440 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 499
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 500 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 559
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 560 GERLFPLIQAM 570
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + +F K GDI S+ + +GKS+G+GFV Y E+A A++ L
Sbjct: 230 NIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ S + NLY+KNL+DD+ +E L
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ FG ITS + +DA
Sbjct: 350 DMFTPFGTITSAKVMRDA 367
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 35/244 (14%)
Query: 3 STPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGF 59
STP S A +A +V L ++ L ++FS G + S +V +S GY +
Sbjct: 34 STPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAY 93
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y++ E A+E+L +G M P +R+ + N+++KNLD
Sbjct: 94 VNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHA 146
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKA 164
+ + L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV 206
Query: 165 IL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
+ ++FE M+ +Y KNI+ +V + + + F + G I+S I R D+G
Sbjct: 207 FVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQG 266
Query: 215 ISKG 218
S+G
Sbjct: 267 KSRG 270
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 52/131 (39%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSK---------------------- 45
+++ G+ N ++KNL +D+ KL +F+ FG I S+K
Sbjct: 326 QSKYQGV-NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDES 384
Query: 46 -------------------------VVVSQE----GKSKGYGFVQYSTPESALDAIEKLQ 76
V + E GKSKG+GFV +S P+ A A+ ++
Sbjct: 385 KEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 444
Query: 77 GATVERMELYV 87
+E LYV
Sbjct: 445 QKMIENKPLYV 455
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 155/274 (56%), Gaps = 36/274 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M T+ G SKG + E T + M +
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 99/208 (47%), Gaps = 42/208 (20%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D +L +FS+FG + S KV+ G S+G+GFV + E A
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LYVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ +E L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA A+ RKAIL Q+ +R+ RA
Sbjct: 364 YVALAEG---RKAILTNQYMQRLSTMRA 388
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLGYA--YINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDEHG 136
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 153/293 (52%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M + G SKG + E T + M G P++ L QR
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEM-----NGRIVATKPLYVALAQR 370
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 104/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L Q+ +RM RA
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 146/265 (55%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G N F+KNL S IDN L+ FS FG+I SSK+ + GKSKG+GFV
Sbjct: 114 MWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
+ +A +AI+ L G + E++VGP + R +R ++E ++F N+YVKN++ + T
Sbjct: 174 HFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETT 233
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E FS++GK+ S + K +G KGFG + L+V
Sbjct: 234 DEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFV 293
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKK ER L+ Q+E R E+ Y KN++D +D+ +LK+ F+ G I+SV
Sbjct: 294 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSV 353
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
++MRT+ G S+G T E T
Sbjct: 354 RVMRTENGKSRGFGFVCFSTPEEAT 378
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 41/246 (16%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
STP+S + + +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 28 STPSSATTENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 87
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIEKL +G M P +R+ +GS+ N+++KNL D+
Sbjct: 88 FNDHEAGKKAIEKLNYTPIKGRLCRIMWSQRDPALRK-----KGSA--NIFIKNLHSDID 140
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D G SKGFG + ++V
Sbjct: 141 NKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFV 200
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+ ER +Q E + +Y KNIN E + E + FS+ G + S + +T+
Sbjct: 201 GPHLSRKERD----SQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTE 256
Query: 213 RGISKG 218
G KG
Sbjct: 257 DGKLKG 262
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 142 MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVATDENGNSKGYGFV 201
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + +++ N+Y+KN++ ++T
Sbjct: 202 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVT 261
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E FS++G+ITS +++DA G +GFG + LYV
Sbjct: 262 EEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKEWRGQELYV 321
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+ Y KN++DEVD+ +L+ F++ G I+S
Sbjct: 322 GRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSA 381
Query: 207 KIMR 210
K+MR
Sbjct: 382 KVMR 385
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + FSK+G+I SS + EGK +G+GFV YST SA +E++
Sbjct: 250 NVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEM 309
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G ELYVG ++ +R +E S+ NLY+KNL D++ +E L
Sbjct: 310 NGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLR 369
Query: 122 EKFSEFGKITSLVISKD 138
F+EFG ITS + +D
Sbjct: 370 AMFAEFGPITSAKVMRD 386
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 71 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEELN 130
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 131 YTLIKGKPCRIMWSQRDPALRK-------TGHGNIFIKNLDAAIDNKALHDTFAAFGNIL 183
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D NG SKG+G K +YV K +R++
Sbjct: 184 SCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQS---- 239
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN EV E E +++FS+ G I+S + R G +G
Sbjct: 240 KFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRG 290
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLY--VARAQK--- 158
+LYV LD +TE +L E FS+ G + S+ + +DA T + G + V Y VA +K
Sbjct: 69 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV-TRRSLGYAYVNYNSVADGEKALE 127
Query: 159 -------KAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
K + I+ +Q + ++ KN++ +D L F+ G I S K+
Sbjct: 128 ELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 187
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 188 ATDENGNSKGY 198
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 361 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFV 419
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 420 HFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMD 479
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 480 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 539
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK ER+A L+ FE+++ ER +LY KN++D +D+ +L++ FS G+IS V
Sbjct: 540 ARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRV 599
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 600 KVMQ-EEGQSKG 610
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 468 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEM 527
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
G + ++V ++ +R E G LYVKNLDD + +E L
Sbjct: 528 NGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLR 587
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
++FS FG I+ + + ++ G SKGFG
Sbjct: 588 KEFSSFGSISRVKVMQE-EGQSKGFG 612
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
N R + +VKNL TID+ KL + FS FG I KV+ +EG+SKG+G + +S+P
Sbjct: 561 NERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVM-QEEGQSKGFGLICFSSP 619
Query: 66 ESALDAIEKLQG 77
E AL A+ ++ G
Sbjct: 620 EDALKAMTEMNG 631
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L++A AQK +
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRD-QLTRRSLGYAYVNFLHLADAQKALD 346
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
+++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKV 406
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 407 MSDDQG-SKGY 416
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +I+ +L+ FS FG I S K+V+ + G+SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ E A AIEK+ + +YVG FI + +R + FNNLY+KN + E
Sbjct: 147 HFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F+EFG+I S + KD+ G SKGFG + LY AR
Sbjct: 207 KLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCAR 266
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ R ER Y KN++D +D+ L++ FS G+I+S K
Sbjct: 267 AQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAK 326
Query: 208 IMRTDRGISKG 218
+M+ SKG
Sbjct: 327 VMKDANNRSKG 337
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 39/210 (18%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S+AR N ++KN DN KL ++F++FG+I+S+ V+ EGKSKG+GFV + P+
Sbjct: 184 SQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPD 243
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSFN---NLYVKNL 111
A +A++ + G +E LY R+ +R +E SS+ NLYVKNL
Sbjct: 244 HAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNL 303
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GS 148
DD++ ++ L E FS G ITS + KDAN SKGF GS
Sbjct: 304 DDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGS 363
Query: 149 KVLYVARAQKKAERKA-ILRAQFERMRKER 177
K LYVA AQ+K +R+A ++ +RM + R
Sbjct: 364 KPLYVALAQRKEDRRAKLIEEHQQRMAQYR 393
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 43/259 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAI---- 72
+V +L + + L FS+ G + S++V + S GYG+V + P+ A A+
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
E L G + M P +R++ + N+++KNLD + ++ L + FS FG+I
Sbjct: 76 YESLMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR- 167
S I D NG SKG+G +V+YV + K ERK+ R
Sbjct: 129 SCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARK 188
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN E D +LK+ F++ G I S +M+ G SKG
Sbjct: 189 VKFNNL------YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 228 RERTSYLRIMYAKQGPGLA 246
+ ++ M+ K+ G A
Sbjct: 243 DHAENAVKTMHGKEIEGRA 261
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQ 157
+G ++LYV +L +++ L KFSE G + S + +D A S G+G YV
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYG----YVNFED 63
Query: 158 KKAERKAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQ 199
K +A+ +E + + + ++ KN++ +++ EL FS
Sbjct: 64 PKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSF 123
Query: 200 CGTISSVKIMRTDRGISKGH 219
G I S KI+ + G SKG+
Sbjct: 124 FGRILSCKIVMDENGQSKGY 143
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 148 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 207
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 208 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 267
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 268 DEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLY 327
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 328 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 387
Query: 206 VKIMR 210
K+MR
Sbjct: 388 AKVMR 392
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 256 NIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEA 315
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 316 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 375
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 376 RELFSSYGNITSAKVMREA 394
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 134/244 (54%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 130 MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 189
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR+ + ++F N+YVKN+D + T
Sbjct: 190 HYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEAT 249
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ F ++G ITS ++ D G S+GFG + LYV
Sbjct: 250 DDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYV 309
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R+E++ Y KN+ DE+D+ EL++ F G I+S
Sbjct: 310 GRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSA 369
Query: 207 KIMR 210
K+MR
Sbjct: 370 KVMR 373
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + +F K+GDI S+ + QEGKS+G+GFV Y E A A+E+L
Sbjct: 238 NIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEEL 297
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ + LYVG ++ +R +E + + NLYVKNL D++ ++ L
Sbjct: 298 NNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELR 357
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY 181
+ F +G ITS + +D + A KK E K+ Q + K + E
Sbjct: 358 KIFEPYGAITSAKVMRDTIPADE---------VAASKKDEEKSDEEKQSDDEEK-KDEGD 407
Query: 182 KNINDEVDEIELKQYFSQCGTIS 204
KN E E +++ + TI+
Sbjct: 408 KNEEGEKKEGDVEDVIKKLDTIT 430
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS G + S +V V++ +S GY +V Y++ A+E+
Sbjct: 59 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSANDGERALEE 116
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 117 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDGAIDNKALHDTFAAFGN 169
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D +G SKG+G A A A E+K + ++F
Sbjct: 170 ILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF 229
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ E + E + F + G I+S + G S+G
Sbjct: 230 EEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRG 278
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS G++ S+ + +DA N S G + L +
Sbjct: 58 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 117
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K + I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 118 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQ 177
Query: 211 TDRGISKGHCMAIAQTKRERTSYLR 235
+ G SKG+ +T S ++
Sbjct: 178 DEHGNSKGYGFVHYETAEAANSAIK 202
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 144/274 (52%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G+SKGYGFV
Sbjct: 118 MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R ++E + F N+YVKN D ++T
Sbjct: 178 HYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVT 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +FG +TS VI +D G S+GFG K L+V
Sbjct: 238 EEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGKKLFV 297
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQY-------FSQCGTISSV 206
+RAQKKAER+ LR +E+ + E+ ++ +N + +E F G+I+S
Sbjct: 298 SRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSA 357
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR ++G SKG + E T + M K
Sbjct: 358 KVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 391
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + + +F +FG + S+ + EG+S+G+GFV + + A A+E L
Sbjct: 226 NIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGL 285
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ +L+V ++A+R QE S F NLY+KNL+DD+ ++ L
Sbjct: 286 HDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLR 345
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F FG ITS + +D GTSKGFG +K LYV+ AQ+
Sbjct: 346 TEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 405
Query: 159 KAERKAILRAQFERMRKER 177
+ R+ L +Q + + R
Sbjct: 406 RDVRRQQLESQIAQRNQIR 424
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L T+ L +IF+ G + S +V +S GY +V Y A+E+L
Sbjct: 47 YVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLN 106
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD+ + + L + F+ FG +
Sbjct: 107 YSSIKGRACRIMWSQRDPALRKTGQ-------GNIFIKNLDEQIDNKALHDTFAAFGNVL 159
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D +G SKG+G K +YV + ER++ L
Sbjct: 160 SCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKL-- 217
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ + +Y KN + EV E E F Q G+++S I R D G S+G
Sbjct: 218 --EEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRG 266
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQK----- 158
+LYV LD +TE +L E F+ G + S+ + +DA T + G + V Y+ A
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADGERALE 103
Query: 159 -------KAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
K I+ +Q + ++ + KN+++++D L F+ G + S K+
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 209 MRTDRGISKGH 219
+ G SKG+
Sbjct: 164 ATDEHGRSKGY 174
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 139/248 (56%), Gaps = 35/248 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + +++VG FI R +R +E F N+YVKN +D T
Sbjct: 147 HFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDFT 206
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+++L E F ++G ITS + + + S+GFG K LY
Sbjct: 207 DDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQLY 266
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 267 VGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITS 326
Query: 206 VKIMRTDR 213
K+M +R
Sbjct: 327 AKVMLEER 334
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
R G+ N +VKNL TID+ +L + FS FG I S+KV++ +E +SKG+GF
Sbjct: 294 RYQGV-NLYVKNLDDTIDDERLRKEFSPFGTITSAKVML-EERRSKGFGF 341
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+T+ +L EKFS G + S+ + KD T + G YV Q +A
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMI-TRRSLG--YAYVNFQQPADAERA 70
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 71 LDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 130
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+ + + G SKG+ +T+ T
Sbjct: 131 KVAQDESGSSKGYGFVHFETEEAAT 155
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 144/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L + FS FG+I SSK+ + GKSKG+GFV
Sbjct: 109 MWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGFGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ SA +AI+ L G + E+YV P + R +R ++E + F N+YVKN++ + T
Sbjct: 169 HFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETT 228
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F+++G + S + K +G KGFG + L+V
Sbjct: 229 DEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFV 288
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKK ER L+ Q+E R E+ Y KN++D +D+ +LK+ F+ GTI+SV
Sbjct: 289 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSV 348
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
++MRTD G SKG T E T
Sbjct: 349 RVMRTDNGKSKGFGFVCFSTPEEAT 373
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + +++F+K+G++ SS + +++GK KG+GFV + E A A+E+L
Sbjct: 217 NVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEEL 276
Query: 76 QGATVERMELYVGPFIRRADRIQE------GSSFN--------NLYVKNLDDDMTEEILV 121
G + L+V ++ +R+QE S NL+VKNLDD + +E L
Sbjct: 277 NGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLK 336
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS+ + + NG SKGFG K LYVA AQ+
Sbjct: 337 EEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 396
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 397 KDVRRSQLAQQIQ 409
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V L T+ L+ IFS G + S +V K S GY +V ++ E+ AIE+L
Sbjct: 38 YVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLN 97
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ +GS N+++KNL D+ + L E FS FG I
Sbjct: 98 YTPIKGRLCRIMWSQRDPALRK-----KGSG--NIFIKNLHPDIDNKALFETFSVFGNIL 150
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S I+ D G SKGFG + +YVA + ER +
Sbjct: 151 SSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERD----S 206
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
Q E + +Y KNIN E + E + F++ G + S + +T+ G KG
Sbjct: 207 QLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKG 257
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL +ID+ KL + F+ +G I S +V+ + GKSKG+GFV +STPE A
Sbjct: 314 AKYQGV-NLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEA 372
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 373 TKAITEKNQQIVAGKPLYVAIAQRKDVR 400
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERK 163
+LYV LD ++E +L + FS G ++S+ + +DA TS G+ YV +A +K
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYA----YVNFNDHEAGKK 91
Query: 164 AI-------LRAQFERM----------RKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
AI ++ + R+ +K ++ KN++ ++D L + FS G I S
Sbjct: 92 AIEQLNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILS 151
Query: 206 VKIMRTDRGISKG 218
KI + G SKG
Sbjct: 152 SKIATDETGKSKG 164
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 132 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 192 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 251
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 252 DEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLY 311
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 312 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 371
Query: 206 VKIMR 210
K+MR
Sbjct: 372 AKVMR 376
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 240 NIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 360 RELFSSYGNITSAKVMREA 378
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 132 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 192 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 251
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 252 DEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLY 311
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 312 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 371
Query: 206 VKIMR 210
K+MR
Sbjct: 372 AKVMR 376
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 240 NIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 360 RELFSSYGNITSAKVMREA 378
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 155/271 (57%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ G SKGY FV
Sbjct: 84 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DDM
Sbjct: 143 HFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS +G+I S+ + ++ G S+GFG + ++V
Sbjct: 203 DERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+++KER A+LY KN+++ +D+ +L++ FS G+IS V
Sbjct: 263 GRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M+ + G SKG + + + + +M
Sbjct: 323 KVMQEE-GQSKGFGLICFSSSEDAARAMTVM 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 10 RLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
R+ G A ++KNL ID+ KL + FS FG I KV+ +EG+SKG+G + +S+ E
Sbjct: 286 RIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVM-QEEGQSKGFGLICFSSSED 344
Query: 68 ALDAIEKLQG 77
A A+ + G
Sbjct: 345 AARAMTVMNG 354
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 11 SLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L + FS G I S K+M
Sbjct: 71 MNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILSSKVM 130
Query: 210 RTDRGISKGHCMAIAQTK 227
DRG SKG+ Q++
Sbjct: 131 SDDRG-SKGYAFVHFQSQ 147
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 132 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 192 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 251
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 252 DEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLY 311
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 312 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 371
Query: 206 VKIMR 210
K+MR
Sbjct: 372 AKVMR 376
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 20/180 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 240 NIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 121 VEKFSEFGKITSLVISKDA-----NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRK 175
E FS +G ITS + ++A T KG + A K+E K +++ E K
Sbjct: 360 RELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSK 419
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV V + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR+ + ++F N+YVKN++ ++T
Sbjct: 195 HYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVT 254
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ E F ++G+ITS ++ D G S+GFG + LY
Sbjct: 255 DDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R+E++ Y KN+ DEVD+ EL++ F G I+S
Sbjct: 315 VGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + + ++F K+G+I S+ + E GKS+G+GFV Y E A A+++
Sbjct: 243 NIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDE 302
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ +R +E + + NLYVKNL D++ +E L
Sbjct: 303 LNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEEL 362
Query: 121 VEKFSEFGKITSLVISKD 138
+ F +G ITS + +D
Sbjct: 363 RKIFEAYGAITSAKVMRD 380
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 37/245 (15%)
Query: 4 TPNSEARLSGIGNA---FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGF 59
TP S A + N+ +V L ++ L ++FS G + S +V +S GY +
Sbjct: 47 TPTSAAPSTAHPNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAY 106
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y++ A+E+L +G M P +R+ + N+++KNLD
Sbjct: 107 VNYNSANDGERALEELNYTLIKGRPCRIMWSQRDPALRK-------TGHGNVFIKNLDGA 159
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKA 164
+ + L + F+ FG I S ++ D G SKG+G A A +A E+K
Sbjct: 160 IDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKV 219
Query: 165 IL---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR- 213
+ ++FE M+ +Y KNI EV + E ++ F + G I+S + +
Sbjct: 220 FVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNET 279
Query: 214 GISKG 218
G S+G
Sbjct: 280 GKSRG 284
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAVPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 188 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 247
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + ++YVG I + DR + ++F N+YVKN+ ++T
Sbjct: 248 HYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVT 307
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F+++G +TS +++ G S+GFG + LYV
Sbjct: 308 DEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYV 367
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R+E+A Y KN+ D+VD+ +L+Q FS+ G I+S
Sbjct: 368 GRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSA 427
Query: 207 KIMR 210
K+MR
Sbjct: 428 KVMR 431
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + + ++F+K+GD+ SS + S EGKS+G+GFV ++T E+A A+E+L
Sbjct: 296 NVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEEL 355
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
G ELYVG ++ +R +E + + NLY+KNL DD+ ++ L
Sbjct: 356 NGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLR 415
Query: 122 EKFSEFGKITSLVISKDA 139
+ FSE+G ITS + +D+
Sbjct: 416 QMFSEYGPITSAKVMRDS 433
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 42/246 (17%)
Query: 4 TPNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
TPNS A + +V L ++ L ++FS+ G + S +V +S GY +V
Sbjct: 102 TPNSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 161
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
Y+ A+E L +G M P +R+ + N+++KNLD +
Sbjct: 162 YNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAID 214
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 215 NKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYV 274
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K +R++ +FE M+ +Y KNI EV + E ++ F++ G ++S + R+D
Sbjct: 275 GYHIPKKDRQS----KFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSD 330
Query: 213 RGISKG 218
G S+G
Sbjct: 331 EGKSRG 336
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQK----- 158
+LYV LD +TE +L E FS+ G + S+ + +DA T + G + V Y A A
Sbjct: 115 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV-TRRSLGYAYVNYNATADGEKALE 173
Query: 159 -------KAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 174 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 233
Query: 209 MRTDRGISKGH 219
+ + G SKG+
Sbjct: 234 AQDENGNSKGY 244
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 145/272 (53%), Gaps = 37/272 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMD 203
Query: 117 EEILVEKFSEF-GKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F ++ GK S+ + D G SKGFG + +Y
Sbjct: 204 DERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIY 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+ L+ +FE +++ER Y KN++D +++ L + FS GTI+S
Sbjct: 264 VGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITS 323
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G S+G + E T + M
Sbjct: 324 AKVM-MEEGRSRGFGFVCFSSPEEATKAVTEM 354
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LY+ +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 206/458 (44%), Gaps = 90/458 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RA KK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 322
Query: 207 KIMRTDRGISKGH---CMAIAQTKRERTSYLRI---MYAKQGPGLASTIFPVHPTLYQRA 260
K+M + G SKG C + Q R + +R+ + P +S P RA
Sbjct: 323 KVM-MEGGRSKGFGFVCFSYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRA 377
Query: 261 --------LQVYQAPDFRHGGMIPNGF---------SPPPPSPLFLMAPDS-----VTQY 298
Q+ +P + P+ F + P P M P S V+
Sbjct: 378 AYYPPGQITQLRPSPRWTAQSARPHPFQNMPGTIRPTAPRPPAFSTMRPASQVPRVVSAQ 437
Query: 299 RGAMMNGHANFPMPLMLSNLQK------PSYNYPI---------SQPRAGQAAANNLTNG 343
R A + P P + P Y Y +QP+ G
Sbjct: 438 RVANTSTQTMGPRPTAAAAAATNSVRTVPQYKYAPGVRNQQHLNAQPQVAMQQPAVHVQG 497
Query: 344 NHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
A SML + P E+K +LG+RL+PL++ +
Sbjct: 498 QEPLTA------SMLASAPPQEQKQMLGERLFPLIQAM 529
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 147/274 (53%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F FG++ S KV V ++G SKGYGFV
Sbjct: 187 MWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNSKGYGFV 246
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R + + F N+YVKNLD ++
Sbjct: 247 HYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKLDEIRAQFTNIYVKNLDTEID 306
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F +G ITS V++ DA+G SKGFG K L+V
Sbjct: 307 EDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFV 366
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER LR F+ + ER LY KNI+D++D+ +L+ F GTI+S
Sbjct: 367 GRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRAEFEPYGTITSS 426
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
KIMR D+G+SKG T E T + M K
Sbjct: 427 KIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNK 460
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 37/201 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + ID + ++F +G I S+ + + +GKSKG+GFV Y T E A A++ L
Sbjct: 295 NIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDAL 354
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ +L+VG +R +R +E +F+ NLY+KN+DDDM +E L
Sbjct: 355 NEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLR 414
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F +G ITS I +D G SKGFG SK LYV+ AQ+
Sbjct: 415 AEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQR 474
Query: 159 KAERKAILRAQFERMRKERAE 179
+ R+ L +Q + + R +
Sbjct: 475 RDVRRQQLESQISQRNQIRMQ 495
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+L G+ N ++KN+ +D+ KL F +G I SSK++ +G SKG+GFV +STP+ A
Sbjct: 392 AKLQGV-NLYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEA 450
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
AI ++ + LYV RR R Q+
Sbjct: 451 TRAIAEMNNKMIGSKPLYVSLAQRRDVRRQQ 481
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE IL E F+ G + S+ + +DA N + G + L
Sbjct: 111 SLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQ 170
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSV 206
Y K I+ +Q + ++ + KN+++ +D L F G + S
Sbjct: 171 LNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLSC 230
Query: 207 KIMRTDRGISKGH 219
K+ ++G SKG+
Sbjct: 231 KVAVDEQGNSKGY 243
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +I+ +L+ FS FG I S K+V+ + G+SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ E A AIEK+ + +YVG FI + +R + FNNLY+KN + E
Sbjct: 147 HFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F+EFG+I S + KD+ G SKGFG + LY AR
Sbjct: 207 KLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCAR 266
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ R ER Y KN++D +D+ L++ FS G+I+S K
Sbjct: 267 AQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAK 326
Query: 208 IMRTDRGISKG 218
+M+ SKG
Sbjct: 327 VMKDANNRSKG 337
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 39/210 (18%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S+AR N ++KN DN KL ++F++FG+I+S+ V+ EGKSKG+GFV + P+
Sbjct: 184 SQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPD 243
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSFN---NLYVKNL 111
A +A++ + G +E LY R+ +R +E SS+ NLYVKNL
Sbjct: 244 HAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNL 303
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GS 148
DD++ ++ L E FS G ITS + KDAN SKGF GS
Sbjct: 304 DDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGS 363
Query: 149 KVLYVARAQKKAERKA-ILRAQFERMRKER 177
K LYVA AQ+K +R+A ++ +RM + R
Sbjct: 364 KPLYVALAQRKEDRRAKLIEEHQQRMAQYR 393
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 43/259 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAI---- 72
+V +L + + L FS+ G + S++V + S GYG+V + P+ A A+
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
E L G + M P +R++ + N+++KNLD + ++ L + FS FG+I
Sbjct: 76 YESLMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR- 167
S I D NG SKG+G +V+YV + K ERK+ R
Sbjct: 129 SCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARK 188
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN E D +LK+ F++ G I S +M+ G SKG
Sbjct: 189 VKFNNL------YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 228 RERTSYLRIMYAKQGPGLA 246
+ ++ M+ K+ G A
Sbjct: 243 DHAENAVKTMHGKEIEGRA 261
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAER 162
++LYV +L +++ L KFSE G + S + +D A S G+G YV K
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYG----YVNFEDPKHAE 68
Query: 163 KAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+A+ +E + + + ++ KN++ +++ EL FS G I
Sbjct: 69 QALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 205 SVKIMRTDRGISKGH 219
S KI+ + G SKG+
Sbjct: 129 SCKIVMDENGQSKGY 143
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 60 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 119
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 120 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 179
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G ITS +S+D G S+GFG + LY
Sbjct: 180 DEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLY 239
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 240 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 299
Query: 206 VKIMR 210
K+MR
Sbjct: 300 AKVMR 304
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+GDI S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 168 NIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEG 227
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 228 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 287
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 288 RELFSSYGNITSAKVMREA 306
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 155/274 (56%), Gaps = 36/274 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A +AI + G + +++VG F R +R ++ G+ F N+YVKNL D+
Sbjct: 144 HFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M T+ G SKG + E T + M +
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 102/208 (49%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D +L +FS+FG + S KV+ G S+G+GFV + E A
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LYVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ +E L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLSTMRA 391
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K++ + G S+G
Sbjct: 124 NILSCKVVCDEHG-SRG 139
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 144/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FG+I SSKV + GKSKG+G+V
Sbjct: 109 MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ ESA +AI+ L G + E+YVGP + + +R + ++F N+Y+KN++ + T
Sbjct: 169 HFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETT 228
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E ++FGK S+V+ + G +KGFG + LYV
Sbjct: 229 DKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYV 288
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ Q+E R E+ Y KN++D +D+ +L++ F+ GTI+S
Sbjct: 289 NRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSA 348
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG T E T
Sbjct: 349 KVMTTENGKSKGFGFVCFSTPEEAT 373
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++ +KFG S + + EG++KG+GFV + E A+ +E+L
Sbjct: 217 NVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEEL 276
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ LYV ++ +R QE + + NL++KNLDD + ++ L
Sbjct: 277 NNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLE 336
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + NG SKGFG K LYVA AQ+
Sbjct: 337 EEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 396
Query: 159 KAERKAILRAQFERMRKER 177
K R++ L Q + + R
Sbjct: 397 KDVRRSQLAQQIQARNQMR 415
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L ++ L+ IFS G + S +V K S GY +V ++ ++A AIEKL
Sbjct: 38 YVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLN 97
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ N+++KNL D+ + L + FS FG I
Sbjct: 98 FTPIKGKLCRIMWSQRDPSLRK-------KGAGNIFIKNLHPDIDNKALYDTFSVFGNIL 150
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SKGFG + +YV K ER+ +
Sbjct: 151 SSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERE----S 206
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN E + E ++ ++ G SV + RT G +KG
Sbjct: 207 KFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKG 257
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ GI N F+KNL +ID+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 314 AKYQGI-NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEA 372
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 373 TKAITEKNQQIVAGKPLYVAIAQRKDVR 400
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 31/148 (20%)
Query: 98 QEGSSFNN--------LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS 148
QEG++ N LYV +LD ++E L + FS G ++S+ + +DA TS G+
Sbjct: 21 QEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYA- 79
Query: 149 KVLYVARAQKKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDE 190
YV A + AI + F +RK+ A KN++ ++D
Sbjct: 80 ---YVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDN 136
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKG 218
L FS G I S K+ + G SKG
Sbjct: 137 KALYDTFSVFGNILSSKVATDETGKSKG 164
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +I+ +L+ FS FG I S K+V+ + G+SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ E A AIEK+ + +YVG FI + +R + FNNLY+KN + E
Sbjct: 147 HFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E F+EFG+I S + KD+ G SKGFG + LY AR
Sbjct: 207 KLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCAR 266
Query: 156 AQKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVK 207
AQ+K ER+ L+ + E+ R ER Y KN++D +D+ L++ FS G+I+S K
Sbjct: 267 AQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAK 326
Query: 208 IMRTDRGISKG 218
+M+ SKG
Sbjct: 327 VMKDANNRSKG 337
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 39/210 (18%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S+AR N ++KN DN KL ++F++FG+I+S+ V+ EGKSKG+GFV + P+
Sbjct: 184 SQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPD 243
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSFN---NLYVKNL 111
A +A++ + G +E LY R+ +R +E SS+ NLYVKNL
Sbjct: 244 HAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNL 303
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GS 148
DD++ ++ L E FS G ITS + KDAN SKGF GS
Sbjct: 304 DDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGS 363
Query: 149 KVLYVARAQKKAERKA-ILRAQFERMRKER 177
K LYVA AQ+K +R+A ++ +RM + R
Sbjct: 364 KPLYVALAQRKEDRRAKLIEEHQQRMAQYR 393
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 43/259 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAI---- 72
+V +L + + L FS+ G + S++V + S GYG+V + P+ A A+
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
E L G + M P +R++ + N+++KNLD + ++ L + FS FG+I
Sbjct: 76 YESLMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR- 167
S I D NG SKG+G +V+YV + K ERK+ R
Sbjct: 129 SCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARK 188
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN E D +LK+ F++ G I S +M+ G SKG
Sbjct: 189 VKFNNL------YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 228 RERTSYLRIMYAKQGPGLA 246
+ ++ M+ K+ G A
Sbjct: 243 DHAENAVKTMHGKEIEGRA 261
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAER 162
++LYV +L +++ L KFSE G + S + +D A S G+G YV K
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYG----YVNFEDPKHAE 68
Query: 163 KAILRAQFERM-----------------RKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+A+ +E + + + ++ KN++ +++ EL FS G I
Sbjct: 69 QALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 205 SVKIMRTDRGISKGH 219
S KI+ + G SKG+
Sbjct: 129 SCKIVMDENGQSKGY 143
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G S+GYGFV
Sbjct: 127 MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFV 186
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR+ + ++F N+YVKN+D + T
Sbjct: 187 HYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETT 246
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F ++G+ITS +++D G +GFG S+ LYV
Sbjct: 247 DDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYV 306
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R+E++ Y KN+ D++D+ EL++ F G+I+S
Sbjct: 307 GRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSA 366
Query: 207 KIMR 210
K+MR
Sbjct: 367 KVMR 370
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F K+G+I S+ + QEGK +G+GFV Y E A A+++L
Sbjct: 235 NIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDEL 294
Query: 76 QGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG +RR A R ++ + + NLYVKNL DD+ +E L
Sbjct: 295 NDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELR 354
Query: 122 EKFSEFGKITSLVISKD 138
+ F +G ITS + +D
Sbjct: 355 KVFEAYGSITSAKVMRD 371
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS G + S +V V++ +S GY +V Y++ A+E+
Sbjct: 56 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSANDGERALEE 113
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 114 LNYTLIKGKPCRIMWSQRDPALRK-------TGHGNIFIKNLDAAIDNKALHDTFAAFGN 166
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D +G S+G+G A A A E+K + ++F
Sbjct: 167 ILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF 226
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ E + E ++ F + G I+S + R G +G
Sbjct: 227 EEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRG 275
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG +TS +++D G ++GFG + LYV
Sbjct: 253 DEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+Q F++ G I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+A + + Q+F KFGD+ SS + QEGK++G+GFV ++T E+A A+E+L
Sbjct: 241 NVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEEL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNLDDD+ +E L
Sbjct: 301 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLR 360
Query: 122 EKFSEFGKITSLVISKD 138
+ F+EFG ITS + +D
Sbjct: 361 QMFAEFGPITSAKVMRD 377
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 41/245 (16%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
TP + + +V L ++ L ++FS+ G + S +V +S GY +V Y
Sbjct: 48 TPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNY 107
Query: 63 STPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
++ A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 108 NSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDN 160
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 161 KALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVG 220
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
K +R +++FE M+ +Y KNI +V + + +Q F + G ++S + R
Sbjct: 221 YHIPKKDR----QSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE 276
Query: 214 GISKG 218
G ++G
Sbjct: 277 GKTRG 281
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 120 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 179
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 180 QDENGNSKGY 189
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 164/318 (51%), Gaps = 73/318 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R R E F N+YVKNL ++
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FG + S+ + +D+NG S+GFG ++LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER++ L+ +FE+M++ER Y KN++D +++ LK+ FS G I+S
Sbjct: 264 GRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL 256
++ P HP L
Sbjct: 383 RRR---------PSHPVL 391
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L+++FS G+I S +V +S GY ++ + P E AL
Sbjct: 10 LSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M + P +R+ S N+++KNL++ + + L + FS F
Sbjct: 70 DTMNFEVIKGQPIRIMWSHRDPGLRK-------SGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S + + +G S+GFG A +KA +RK + F+ +K
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV-GHFKSRQKRE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
AEL KN++ VDE L+ FSQ G + SVK+MR G S+G
Sbjct: 181 AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG 232
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
G S ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 HGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ + +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G+I S K++ + G
Sbjct: 123 GSILSSKVVYNEHG 136
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 167/353 (47%), Gaps = 87/353 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +G S+ + D G SKGFG + +YV
Sbjct: 204 DEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMA 291
QR V P+ + N + P PPS F+ A
Sbjct: 383 ------------------MQRMATVRAVPN-----PVLNPYQPAPPSGYFMAA 412
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 132 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN++ D+T
Sbjct: 192 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVT 251
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 252 DEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLY 311
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS G I+S
Sbjct: 312 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITS 371
Query: 206 VKIMR 210
K+MR
Sbjct: 372 AKVMR 376
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+G+I S+ + E GKS+G+GFV +S E+A A+E
Sbjct: 240 NIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L ++ +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 121 VEKFSEFGKITSLVISKDA 139
E FS +G ITS + ++A
Sbjct: 360 RELFSSYGNITSAKVMREA 378
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 175/353 (49%), Gaps = 59/353 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R + +GN F+KNL +IDN LH F+ FG+I S KV + + G SKGYGFV
Sbjct: 53 MWSQRDPALRKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFV 112
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y E+A AI+ + G + +YVG + R +R I E S++ NLYVK L +++
Sbjct: 113 HYEGGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEIS 172
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E E F+++G++TS V+ D +G SKGFG + LYV
Sbjct: 173 EAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYV 232
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKK ER+ L+ +E+ + +++ Y KN+ D++DE ++ F+ GTI+S
Sbjct: 233 SRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITST 292
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF---PVHPTLYQR---- 259
KIMR ++G SKG + E T + + K +F P++ +L QR
Sbjct: 293 KIMRDEKGASKGFGFVCFSSPDEATKAVTELNGK--------MFGQKPLYVSLAQRKDVR 344
Query: 260 ----ALQVYQAPDFRHGGMIPNGFSPP------PPSPLFLMAPDSVTQYRGAM 302
Q+ Q R + +G P PP+ ++ P Q RG M
Sbjct: 345 KQQLEAQLAQRNQIRSQQLAASGIPPNMPPYGMPPNQMYYPGPGGYPQQRGMM 397
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 204/447 (45%), Gaps = 77/447 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + +R SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG I + DR + +++ N+YVKN+D + +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F FG ITS+ + KD +G SKGFG + +YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R ER Y KN++D +D +L++ F G+I+S
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M + G SKG + E T + M + G P++ L QR Q
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGK-----PLYVALAQRKDVRRSQ 295
Query: 263 VYQAPDFRH---------GGMIPNGFSPP---------PP-----SPLFLMAPDSVTQYR 299
+ Q R+ G IP F PP PP +P P + + R
Sbjct: 296 LEQQIQARNQMRMQNAAASGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMMMR-R 354
Query: 300 GAMMNGHANFPMPLMLSNLQK-PSYNYPI------SQPRAGQAAANNLTNGN-HRAAASN 351
G G +P P N Q P Y P QP Q N N ++
Sbjct: 355 GQQFPGPEQWPRP--GPNGQPVPVYGIPPQFQDFNGQPMRQQQRGGYYPNRNQNKGGRQQ 412
Query: 352 ENLSSMLVATSPDERKDILGQRLYPLV 378
++L++++ PD++K ILG+ LYP +
Sbjct: 413 KDLAAIIANAPPDQQKRILGEELYPKI 439
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F +FG +TS +++D G +GFG + LYV
Sbjct: 253 DDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+Q F++ G I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F KFGD+ SS + QEGK +G+GFV ++T E+A A+E L
Sbjct: 241 NVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G ELYVG ++ A R+++ + + NLY+KNLDDD+ +E L
Sbjct: 301 NGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLR 360
Query: 122 EKFSEFGKITSLVISKD 138
+ F+EFG ITS + +D
Sbjct: 361 QMFAEFGPITSAKVMRD 377
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 41/245 (16%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
TP + + +V L ++ L ++FS+ G + S +V +S GY +V Y
Sbjct: 48 TPTTAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNY 107
Query: 63 STPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
++ A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 108 NSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDN 160
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 161 KALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVG 220
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
K +R+ ++FE M+ +Y KNI +V + E ++ F + G ++S + R
Sbjct: 221 YHIPKKDRQ----SKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE 276
Query: 214 GISKG 218
G +G
Sbjct: 277 GKPRG 281
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS+ G + S+ + +DA N S G K L +
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 180
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 181 DENGNSKGY 189
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 321 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 381 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 427
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE++L KFS G + S+ I +D T + G YV Q +KA
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLG--YAYVNFLQLADAQKA 125
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + L KN++ +D L ++FS G I S
Sbjct: 126 LDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS 185
Query: 207 KIMRTDRGISKGH 219
K+M D+G SKG+
Sbjct: 186 KVMSDDQG-SKGY 197
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ ++T
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVT 254
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F +FG++TS +++D G ++GFG + LYV
Sbjct: 255 DDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 314
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L+ FS+ G I+S
Sbjct: 315 GRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSA 374
Query: 207 KIMR 210
K+MR
Sbjct: 375 KVMR 378
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F KFG++ SS + QEGK++G+GFV ++T E+A A++ L
Sbjct: 243 NVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDL 302
Query: 76 QGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG +RR A R+++ + + NLY+KNL DD+ +E L
Sbjct: 303 NGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLR 362
Query: 122 EKFSEFGKITSLVISKDA 139
FSE+G ITS + +D+
Sbjct: 363 AMFSEYGPITSAKVMRDS 380
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+T A+E+L
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELN 123
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRK-------TGAGNIFIKNLDAAIDNKALHDTFAAFGNIL 176
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D +G SKG+G K +YV K +R+ +
Sbjct: 177 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----S 232
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN EV + E ++ F + G ++S + R G ++G
Sbjct: 233 KFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRG 283
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 153 VARAQKKAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + +RK A KN++ +D L F+ G I S K+
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVA 181
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 182 QDEHGNSKGY 191
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 138/251 (54%), Gaps = 37/251 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 138 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 197
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+Y+KN+ ++T
Sbjct: 198 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVT 257
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F+ FG +TS +++D G S+GFG + LYV
Sbjct: 258 DDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+Q F+ G I+S
Sbjct: 318 GRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSA 377
Query: 207 KIMR---TDRG 214
K+MR TD G
Sbjct: 378 KVMRDNATDSG 388
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+T A+E+L
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEELN 126
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 127 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 179
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K +R++
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 235
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ EV + E + F+ G ++S + R G S+G
Sbjct: 236 KFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRG 286
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 125 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 184
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 185 QDENGNSKGY 194
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 141 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 199
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 200 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 259
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 260 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 319
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 320 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 379
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 380 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 426
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 68 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 126
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 186
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 187 MSDDQG-SKGY 196
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 216/499 (43%), Gaps = 134/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S KVV + G SKG+GFV
Sbjct: 85 MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN D M
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L F FG++ S+ + D G SKGFG K +YV
Sbjct: 204 DKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
AQKK +R L+ +FE++ ++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITST 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M T+ G SKG C +A+AQ K ER ++L
Sbjct: 324 KVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 235 --RIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAP 292
R+ + GP + P+ Y A +P + P P ++ P
Sbjct: 383 IQRMASVRSGPNSLINAYQPAPSGYSVA-------------AVPQTQNCAPCCPSQIVQP 429
Query: 293 DSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQA----AANNLTN------ 342
T++ H FP S+ P ++ +P + AA +TN
Sbjct: 430 SPSTRWTAQGARPHP-FPNVSGASHPAAPKSSFTTVRPSSSHVPQVMAAQRITNTSAQTT 488
Query: 343 GNHRAAASN----------------------ENLSSMLV------------------ATS 362
G A AS+ ++L++ LV T+
Sbjct: 489 GQRPALASSPATTPVRSIPQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPWTASTLGTA 548
Query: 363 PDERKDILGQRLYPLVKKL 381
P E+K +LG+RL+PL++ +
Sbjct: 549 PQEQKQMLGERLFPLIQAM 567
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYAS----VNFEQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ F+ ++ + + KN+N +D L FS
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K++ + G SKGH
Sbjct: 123 GNILSCKVVCDENG-SKGH 140
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 321 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 381 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 427
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 188 MSDDQG-SKGY 197
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAVPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 321 GRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 381 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 427
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 188 MSDDQG-SKGY 197
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 148/274 (54%), Gaps = 36/274 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 12 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 70
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 71 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMD 130
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G S+ + D +G SKGFG K +YV
Sbjct: 131 DEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 191 GRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 250
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M + G SKG + E T + M +
Sbjct: 251 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGR 283
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
R G+ N +VKNL +D+ +L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 216 TRYQGV-NLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEA 273
Query: 69 LDAIEKLQGATV 80
A+ ++ G V
Sbjct: 274 TKAVTEMNGRIV 285
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 321 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 381 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 427
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 188 MSDDQG-SKGY 197
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + +F K GDI S+ + +GKS+G+GFV Y E+A A++ L
Sbjct: 230 NIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ S + NLY+KNL+DD+ +E L
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ FG ITS + +DA
Sbjct: 350 DMFTPFGTITSAKVMRDA 367
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 4 TPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
TP S A +A +V L ++ L ++FS G + S +V +S GY +V
Sbjct: 35 TPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 94
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y++ E A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 95 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAI 147
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 166 L---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ ++FE M+ +Y KNI+ +V + + + F + G I+S I R D+G
Sbjct: 208 VGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGK 267
Query: 216 SKG 218
S+G
Sbjct: 268 SRG 270
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 137/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + SKGYGFV
Sbjct: 119 MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 179 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEIT 238
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ F FG+ITS +S D +G S+GFG ++ LYV
Sbjct: 239 DDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYV 298
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L+ F+ GTI+S
Sbjct: 299 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSA 358
Query: 207 KIMR 210
K+MR
Sbjct: 359 KVMR 362
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ I + + +F FG+I S+ + Q+GKS+G+GFV Y+ ESA A+ ++
Sbjct: 227 NIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEM 286
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 287 NEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLR 346
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+ +G ITS + +DA
Sbjct: 347 DLFTPYGTITSAKVMRDA 364
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 263 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 323 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 369
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 130 MSDDQG-SKGY 139
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 263 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 323 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 369
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 130 MSDDQG-SKGY 139
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 142/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG+I S K+ + GKS+ +GFV
Sbjct: 114 MWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ E+A +AI+ + G + +E+YV P + + DR + S+F N+YVKN+D + T
Sbjct: 174 HFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETT 233
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + FS +G ITS V+ +D G +GFG + LYV
Sbjct: 234 QEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYV 293
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+SV
Sbjct: 294 GRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSV 353
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR + G SKG T E T
Sbjct: 354 KVMRDEAGNSKGFGFVCFSTPEEAT 378
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ L+ +FS G + S +V K S GY +V + + AIEKL
Sbjct: 43 YVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKLN 102
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + R ++GS N+++KNL + + L + FS FG I S I+
Sbjct: 103 YTPIKGRPCRIMWSQRDPSLRKKGSG--NVFIKNLHPAIDNKALHDTFSVFGNILSCKIA 160
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D G S+ FG +YVA K +R++ L + +
Sbjct: 161 TDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKL----DEV 216
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ +Y KNI+ E + E ++ FS G I+S + R + G +G
Sbjct: 217 KSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRG 262
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV LD +TE +L + FS G ++S+ + +DA TS G+ YV A R A
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYA----YVNFHDHNAGRTA 97
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
I + + ++ + KN++ +D L FS G I S
Sbjct: 98 IEKLNYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSC 157
Query: 207 KIMRTDRGISK 217
KI + G S+
Sbjct: 158 KIATDETGKSR 168
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 219/476 (46%), Gaps = 104/476 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E ++F N+YVKNL +
Sbjct: 144 HFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L + FS+FGK+ S+ + +D +G S+GFG ++LYV
Sbjct: 204 ERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE +++R LY KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPN-------GFSPPP 283
++ GP L S P L A QA H G P+ PP
Sbjct: 383 MQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQA---EHYGSSPSRQPAPRWTTQPPR 439
Query: 284 PSPLFLMAPDSVTQYRGAMMNG--HANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLT 341
PS ++ P ++++ A + + +P ++ + Q+ + N P G A +
Sbjct: 440 PSSASMVRPPAMSRRPLAQVCSVRQTSTQVPYLVPHTQRVA-NIGTQTPGPGGAGCSTPG 498
Query: 342 NG--NHRAAASNEN-----------------LSSMLVATSPDERKDILGQRLYPLV 378
HR + N +SML A ++K ++G+RLYPL+
Sbjct: 499 RSLPTHRYFLATPNTHEVQEPAVRILGPEPLTASMLAAAPLHQQKQMIGERLYPLI 554
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ D G
Sbjct: 124 NILSCKVVCDDHG 136
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 157/293 (53%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+Y+KN ++M+
Sbjct: 144 HFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMS 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L E FS FGK S+ + D G SKGFG ++LYV
Sbjct: 204 NERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE++++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 94/192 (48%), Gaps = 38/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN + N +L + FS FG S KV+ G+SKG+GFV + + A A+E +
Sbjct: 192 NVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDM 251
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + LYVG +R +R E F NLYVKNLDD + +E L
Sbjct: 252 NGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
++FS +G ITS + + G SKGFG +K LYVA AQ+
Sbjct: 312 KEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 159 KAERKAILRAQF 170
K ERKAIL Q+
Sbjct: 371 KEERKAILTNQY 382
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + KN++D +D L FS G
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFG 123
Query: 202 TISSVKIMRTDRGISKGH 219
I S K++ + G S+G+
Sbjct: 124 NILSCKVVCDENG-SRGY 140
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 34/243 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D+T
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIM 209
K++
Sbjct: 362 KVI 364
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 35/243 (14%)
Query: 4 TPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
TP + A+ + +A +V L ++ L ++FS G + S +V +S GY +V
Sbjct: 35 TPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 94
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y++ E A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 95 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAI 147
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 166 L---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ ++FE M+ +Y KNI+ +V + + ++ F + G I+S I R D+G
Sbjct: 208 VGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGK 267
Query: 216 SKG 218
S+G
Sbjct: 268 SRG 270
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 54/142 (38%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSK---------------------- 45
+++ G+ N ++KNL +D+ KL +F+ FG I S+K
Sbjct: 326 QSKYQGV-NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKE 384
Query: 46 ---------------------------VVVSQE----GKSKGYGFVQYSTPESALDAIEK 74
V + E GKSKG+GFV +S P+ A A+ +
Sbjct: 385 DEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTE 444
Query: 75 LQGATVERMELYVGPFIRRADR 96
+ +E LYV R+ R
Sbjct: 445 MNQKMIEGKPLYVALAQRKDVR 466
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 173/363 (47%), Gaps = 88/363 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 383 ------------------MQRMASVRAVPN-----PVINPYQPAPPSGYF-MAAVPQTQN 418
Query: 299 RGA 301
R A
Sbjct: 419 RAA 421
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 157/314 (50%), Gaps = 64/314 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SGIGN FVKNL +I+N L+ FS FG+I S KV+ G SKGYGFV
Sbjct: 184 MWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFV 242
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ ESA AI+K+ G + ++++VG F R DR E F N+Y+KN +DM
Sbjct: 243 HFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREFTNVYIKNFGEDMD 302
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + F +FG S+ + +D G SKGFG + +Y
Sbjct: 303 EDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYA 362
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE++++ R Y KN++D++D+ L++ FS GTI+S
Sbjct: 363 GRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSA 422
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 423 KVM-MNNGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQRKEERKAHLANQY 481
Query: 239 AKQGPGLASTIFPV 252
++ + ST P
Sbjct: 482 VQRMARIRSTATPT 495
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 108 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 167
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ +++T
Sbjct: 168 HYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVT 227
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F+ FG +TS +++D G S+GFG + LYV
Sbjct: 228 DDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYV 287
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++DEVD+ +L+ F+ G I+S
Sbjct: 288 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSA 347
Query: 207 KIMR 210
K+MR
Sbjct: 348 KVMR 351
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+A+ + + + +F+ FGD+ SS + QEGKS+G+GFV ++T E+A A+E L
Sbjct: 216 NVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDL 275
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ + + NLY+KNLDD++ +E L
Sbjct: 276 NNKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDEVDDEKLR 335
Query: 122 EKFSEFGKITSLVISKD 138
F++FG ITS + +D
Sbjct: 336 TLFADFGPITSAKVMRD 352
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 87 VGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGT-SKG 145
GP A Q +S LYV LD +TE +L E FS+ G + S+ ++ N T KG
Sbjct: 46 AGPTPTTAPHPQASAS---LYVGELDPSVTEAMLFELFSQIGSVASIRALEELNYTLIKG 102
Query: 146 FGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
++++ ++R LR + + ++ KN++ +D L F+ G I
Sbjct: 103 RPCRIMW-------SQRDPALR------KTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 149
Query: 205 SVKIMRTDRGISKGH 219
S K+ + + G SKG+
Sbjct: 150 SCKVAQDENGNSKGY 164
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 181/367 (49%), Gaps = 80/367 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS K S+ + +D +G SKGFG K+++V
Sbjct: 204 DESLKELFS---KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 261 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 320
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 321 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 379
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 380 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 431
Query: 294 SVTQYRG 300
Q G
Sbjct: 432 PRWQQGG 438
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 142/252 (56%), Gaps = 35/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV S+ G S GYGFV
Sbjct: 120 MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFV 178
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E + F N+Y KN+D D+T
Sbjct: 179 HYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVT 238
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F+++GKITS V+ +D +G SKGFG + L+V
Sbjct: 239 DEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFV 298
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E + E+ LY KNI + D+ L+ F+ G I+S
Sbjct: 299 ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRDEFAPFGAITSC 358
Query: 207 KIMRTDRGISKG 218
KIMR G+S+G
Sbjct: 359 KIMRAPSGVSRG 370
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 40/201 (19%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S AR + N + KN+ + + + + ++F+K+G I S + ++GKSKG+GFV + +
Sbjct: 221 SRARFT---NVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHD 277
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLD 112
A A+++L + + +L+V ++++R +E S+ NLY+KN+
Sbjct: 278 EAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 337
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SK 149
+ +E L ++F+ FG ITS I + +G S+GFG ++
Sbjct: 338 ESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNR 397
Query: 150 VLYVARAQKKAERKAILRAQF 170
LYVA AQ+K R+ L AQ
Sbjct: 398 PLYVALAQRKDVRRQQLEAQI 418
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 136/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVT 254
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ F +FG +TS +++D G S+GFG + LY
Sbjct: 255 DDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R+E+A Y KN++DEVD+ +L+Q FS+ G I+S
Sbjct: 315 VGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 30/189 (15%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + +F KFG + SS + QE GKS+G+GFV +++ E A A+E+
Sbjct: 243 NIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEE 302
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L LYVG ++ +R +E S + NLY+KNLDD++ ++ L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKL 362
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL 180
+ FSEFG ITS +KV+ A+ E +A A + KE E
Sbjct: 363 RQLFSEFGPITS---------------AKVMRETLAEGADEPEAKDAADAKENVKEDEEA 407
Query: 181 YKNINDEVD 189
K DE D
Sbjct: 408 AKTEGDEGD 416
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 46/234 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+++
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTSDGEKALDE 121
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K +YV K +R+
Sbjct: 175 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ--- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
++FE M+ +Y KNI +V + + + F + G ++S + R + G S+G
Sbjct: 232 -SKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRG 284
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDE 121
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLR 235
+ + G SKG+ +T + ++
Sbjct: 182 QDEHGNSKGYGFVHYETDEAASQAIK 207
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 144/252 (57%), Gaps = 37/252 (14%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
W + R SG+GN F+K L +IDN L+ FS FG+I S K+V + G S+GYGFV
Sbjct: 85 WYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVH 143
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMTE 117
+ T E+A AIEK+ G + +++VG F+ R +R++ FNN+YVKNL ++ +
Sbjct: 144 FETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEETDD 203
Query: 118 EILVEKFSEFGKITSL-VISKDANGTSKGFG-----------------------SKVLYV 153
E L E F +GKI S V+ D++ SK FG K+LYV
Sbjct: 204 EKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K ER+A L+ +FER+RKER Y KN++D +D+ L++ F+Q GTI+S
Sbjct: 264 GRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ G SKG
Sbjct: 324 KVM-TENGRSKG 334
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEK 74
N +VKNL+ D+ KL +IF +G I S+KV++ KSK +GFV + PE+A A+E
Sbjct: 191 NVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEA 250
Query: 75 LQGATVERMELYVG--------------PFIR-RADRIQEGSSFNNLYVKNLDDDMTEEI 119
L G LYVG F R R +RI N L+VKNLDD++ ++
Sbjct: 251 LNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVN-LFVKNLDDNIDDKR 309
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F++FG ITS + + NG SKGFG ++ LYVA A
Sbjct: 310 LRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVALA 368
Query: 157 QKKAERKAIL 166
Q+K +RKA L
Sbjct: 369 QRKEDRKAYL 378
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N FVKNL ID+ +L + F++FG I S+KV+ ++ G+SKG+GFV +S+PE A
Sbjct: 290 RYQGV-NLFVKNLDDNIDDKRLRKEFAQFGTITSAKVM-TENGRSKGFGFVYFSSPEEAT 347
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
AI ++ +E LYV R+ DR
Sbjct: 348 KAIVEMNEKIIEARPLYVALAQRKEDR 374
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV++L D+TE++L +KFS G + S+ + +D T + G YV Q +A
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMI-TRRSLG--YAYVNFHQPADAERA 67
Query: 165 ILRAQFE--RMRKERAELY----------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ + R R Y K ++ +D L FS G ISS
Sbjct: 68 LDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSC 127
Query: 207 KIMRTDRGISKGH 219
KI+ + G S+G+
Sbjct: 128 KIVCDEHG-SRGY 139
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 203/455 (44%), Gaps = 93/455 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 125 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D + +
Sbjct: 185 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYS 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F+ +GKITS+ + KD +G SKGFG + +YV
Sbjct: 245 EESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 305 GRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSA 364
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M D G SKG T E T + M + G P++ L QR Q
Sbjct: 365 KVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYVALAQRKDVRRSQ 419
Query: 263 VYQAPDFRH--------GGMIPNGFSPP---------PP-----SPLFLMAPDSVTQYRG 300
+ Q R+ G +P F PP PP +P P + + RG
Sbjct: 420 LEQQIQARNQMRMQNAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPYPGPNPQMMMRGRG 479
Query: 301 AMMNGHANFPMPLMLSNLQKPSYNYP-----------------ISQPRAGQAAANNLTNG 343
P P + P Y P QPR G N TN
Sbjct: 480 QPFPEQWPRPGP---NGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQPRGGYYPNRNQTN- 535
Query: 344 NHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+L++++ + D++K ILG+ LYP +
Sbjct: 536 -------KRDLAAIISSVPQDQQKRILGEELYPKI 563
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 54 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 111
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L +E + + D S N+++KNL + + L + FS FGKI S
Sbjct: 112 LNYTPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 169
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + ++V + K +R+ ++FE
Sbjct: 170 VAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE----SKFE 225
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ E ++ F+ G I+S+ + + G SKG
Sbjct: 226 EMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKG 273
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 35/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 131 MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 190
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR+ + ++F N+YVKN+D ++T
Sbjct: 191 HYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVT 250
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ E F ++G+ITS ++ D G S+GFG + LY
Sbjct: 251 DDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLY 310
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+ Y KN++D+VD+ +L+ F+ GTI+S
Sbjct: 311 VGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITS 370
Query: 206 VKIMRTDRGISK 217
K+MR + + +
Sbjct: 371 AKVMRDTQPVGR 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 38/230 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS G + S +V V++ +S GY +V Y++ + A+E+
Sbjct: 60 YVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSSDDGEKALEE 117
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 118 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDGAIDNKALHDTFAAFGN 170
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D NG SKG+G A A A E+K + ++F
Sbjct: 171 ILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKF 230
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR-GISKG 218
E M+ +Y KNI+ EV + E ++ F + G I+S + + G S+G
Sbjct: 231 EEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRG 280
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS G++ S+ + +DA N S G K L +
Sbjct: 59 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEEL 118
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K + I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 119 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQ 178
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 179 DENGNSKGY 187
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 175/345 (50%), Gaps = 52/345 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E + F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA--LQVY 264
K+M + G SKG + E T + M G P++ L QR Q +
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEDRQAH 377
Query: 265 QAPDF--RHGGM--IP----NGFSPPPPSPLFLMAPDSVTQYRGA 301
++ R + +P N + P PPS F MA TQ R A
Sbjct: 378 LTNEYMQRMASVRAVPNPVINPYQPAPPSGYF-MAAVPQTQNRAA 421
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 205/458 (44%), Gaps = 98/458 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 126 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D + +
Sbjct: 186 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYS 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + FS FGKITS+ + KD +G SKGFG + +YV
Sbjct: 246 EESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 306 GRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M + G SKG T E T + M + G P++ L QR Q
Sbjct: 366 KVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYVALAQRKDVRRSQ 420
Query: 263 VYQAPDFRH--------GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP-- 312
+ Q R+ G +P F P P+F Q NG N P P
Sbjct: 421 LEQQIQARNQMRMQNAAAGGLPGQFIP----PMFY------GQQGFFPPNGRGNAPYPGP 470
Query: 313 ---LMLSNLQKPSYNYPISQPRAGQAAA-----------NNLTNGN-------------- 344
+M+ +P +P PR G NG
Sbjct: 471 NPQMMMRGRGQP---FPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQQPRG 527
Query: 345 ----HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+R S +L++++ + D++K ILG+ LYP +
Sbjct: 528 GYYPNRNQTSKRDLAAIISSVPQDQQKRILGEELYPKI 565
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P RR S N+++KNL + + L + FS FGK
Sbjct: 113 LNYNPIEGRPCRIMWSQRDPSARR-------SGDGNIFIKNLHPAIDNKALHDTFSAFGK 165
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S ++ D G SK FG + ++V + K +R+
Sbjct: 166 ILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE--- 222
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++FE M+ +Y KNI+ E ++ FS G I+S+ + + G SKG
Sbjct: 223 -SKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKG 274
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 136/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ + +
Sbjct: 193 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEAS 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F +G+ITS +++D +G S+GFG + LYV
Sbjct: 253 DDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+ FS+ G I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + ++F ++G+I SS + Q+GKS+G+GFV Y+T ESA A+++L
Sbjct: 241 NIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDEL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G + +LYVG ++ A R+++ S + NLY+KNLDDD+ +E L
Sbjct: 301 NGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLR 360
Query: 122 EKFSEFGKITSLVISKDA 139
FSEFG ITS + +DA
Sbjct: 361 HMFSEFGPITSAKVMRDA 378
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 42/246 (17%)
Query: 4 TPNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
TPNS A + +V L ++ L ++FS+ G + S +V +S GY +V
Sbjct: 47 TPNSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVN 106
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
Y++ A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 107 YNSTSDGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAID 159
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + F+ FG I S +++D +G SKG+G K +YV
Sbjct: 160 NKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 219
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K +R++ +FE M+ +Y KN+N E + E ++ F + G I+S + R
Sbjct: 220 GHHIPKKDRQS----KFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQ 275
Query: 213 RGISKG 218
G S+G
Sbjct: 276 DGKSRG 281
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEE 119
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 120 LNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 179
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 180 QDEHGNSKGY 189
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 161/293 (54%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 277 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFV 335
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ ++V F R DR E S F N+Y+KN DDM
Sbjct: 336 HFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMD 395
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L E FS++G S+ + D++G SKGFG ++++V
Sbjct: 396 DMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFV 455
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++R+ER +LY KN++D +D+ +L++ F+ G+IS V
Sbjct: 456 GRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRV 515
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + E ++ M G L S P++ L QR
Sbjct: 516 KVMQEE-GRSKGFGLICFSSHEE---AIKAMTEMNGRILGSK--PLNIALAQR 562
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 38/191 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+++L ++FSK+G S KV+ GKSKG+GFV +++ E+A +A+E++
Sbjct: 384 NVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEM 443
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDDMTEEILV 121
G + ++VG ++ +R E LY+KNLDD + +E L
Sbjct: 444 NGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLR 503
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
++F+ FG I+ + + ++ G SKGF GSK L +A AQ+
Sbjct: 504 KEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQR 562
Query: 159 KAERKAILRAQ 169
ERK Q
Sbjct: 563 NEERKTCFDNQ 573
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L D+TE++L +KFS G + S+ I +D S G+ L+VA AQK +
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 163 K--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIM 209
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 264 MNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKVM 323
Query: 210 RTDRGISKGH 219
D+G SKG+
Sbjct: 324 SDDQG-SKGY 332
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 170/354 (48%), Gaps = 72/354 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L FS FG+I S KVV + G SKGYGFV
Sbjct: 154 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFV 212
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 213 HFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 272
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L F +FG S+ + D +GTSKGFG K +YV
Sbjct: 273 DLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 332
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+++++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 333 GRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 392
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 393 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQY 451
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAP 292
++ + + PV L YQ P IP + P P MAP
Sbjct: 452 MQRMASVRAVPNPV--------LNPYQPPSGYFMTAIPQTQNRPAYYPASQMAP 497
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 142 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN +M
Sbjct: 201 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMD 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 321 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 381 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 427
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 188 MSDDQG-SKGY 197
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 137/465 (29%), Positives = 216/465 (46%), Gaps = 95/465 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 60 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 118
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T ++A AI + G + +++VG F R +R E + F N+YVKNL D+
Sbjct: 119 HFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVD 178
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E L + FS+FGK+ S+ + +D++G S+GFG ++LYV
Sbjct: 179 ERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYV 238
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +++ +L++ FS G I+S
Sbjct: 239 GRAQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSA 298
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ G SKG C +A+AQ K ER + L Y
Sbjct: 299 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 357
Query: 239 AKQ--------GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFS------PPPP 284
++ GP + + P L QA + G M P + PP P
Sbjct: 358 MQRLSTVRALGGPLMGAFQQPTSYFLSAAPQAPAQAAYYGSGPMTPIQTAPRWTAQPPRP 417
Query: 285 SPLFLMAPDSVTQYRGAMMNG--HANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLT- 341
S ++ P +TQ+ A ++ A+ P + + Q+ Q G + L
Sbjct: 418 SSASMIRPPGMTQHLSAHVSSVRQASTQAPHQVPHAQRMGECGGQGQEECGHGESKVLVM 477
Query: 342 -----NGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKKL 381
R + + +S +V T G+RLYPL++ +
Sbjct: 478 ELVLEGSEDRPPWARQVCASEVVHT---------GERLYPLIRDV 513
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 138/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ + +
Sbjct: 195 HYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEAS 254
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F+++G++TS +++D G S+GFG + LYV
Sbjct: 255 DDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYV 314
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R+E+A Y KN++D+VD+ +L+ FS+ G I+S
Sbjct: 315 GRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDDEKLRAMFSEFGPITSA 374
Query: 207 KIMR 210
K+MR
Sbjct: 375 KVMR 378
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 106/250 (42%), Gaps = 87/250 (34%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + +F+K+G++ SS + QEGKS+G+GFV ++T E+A A+E+L
Sbjct: 243 NVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEEL 302
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G +LYVG ++ +R +E S+ NLY+KNL DD+ +E L
Sbjct: 303 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDDEKLR 362
Query: 122 EKFSEFGKITSLVISKDAN----------------------------------------- 140
FSEFG ITS + +D+
Sbjct: 363 AMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEAADKKDAK 422
Query: 141 ------GTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
G SKGFG +K LYVA AQ+K RK L +
Sbjct: 423 KGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQ 482
Query: 172 ---RMRKERA 178
+MR + A
Sbjct: 483 ARNQMRMQSA 492
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 42/246 (17%)
Query: 4 TPNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
TPNS + + +V L + L ++FS G + S +V +S GY +V
Sbjct: 49 TPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVN 108
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
Y+T A+E+L G M P +R+ + N+++KNLD +
Sbjct: 109 YNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQ-------GNVFIKNLDVAID 161
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + F+ FG I S +++D +G SKG+G K +YV
Sbjct: 162 NKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 221
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K +R+ ++FE M+ +Y KNIN E + E + F++ G ++S + R
Sbjct: 222 GHHIPKKDRQ----SKFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQ 277
Query: 213 RGISKG 218
G S+G
Sbjct: 278 EGKSRG 283
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL--- 151
LYV L+ +TE +L E FS G + S+ + +DA N + G K L
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 152 -YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
Y + R R + KN++ +D L F+ G I S K+ +
Sbjct: 123 NYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 182
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 183 DEHGNSKGY 191
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 134 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ + +
Sbjct: 194 HYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNISTEAS 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F ++G ITS +++D G S+GFG + LYV
Sbjct: 254 DDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+Q F++ G I+S
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSA 373
Query: 207 KIMR 210
K+MR
Sbjct: 374 KVMR 377
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+++ + + ++F K+GDI SS + QEGKS+G+GFV ++T ESA A+E+L
Sbjct: 242 NIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEEL 301
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNLDDD+ +E L
Sbjct: 302 HGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLR 361
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+EFG ITS + +DA
Sbjct: 362 QMFAEFGPITSAKVMRDA 379
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELN 122
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 123 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K +R++
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 231
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ E + E ++ F + G I+S + R G S+G
Sbjct: 232 KFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG 282
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 180
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 181 QDENGNSKGY 190
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 136/243 (55%), Gaps = 35/243 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D +G SKGFG K +YV
Sbjct: 204 DEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSA 323
Query: 207 KIM 209
K+M
Sbjct: 324 KVM 326
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 42/235 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G V M P +R+ S N+++KNLD + + L + FS F
Sbjct: 70 DTMNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+G + ++V R + + ER+A
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ A+ KE +Y KN +++D+ +LK+ F + G S+++M D G SKG
Sbjct: 182 EMGAR----AKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG 232
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 162/293 (55%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+K+L +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKNL D+M
Sbjct: 151 HFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDNM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +FER++ KE++ +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M GP L S P+ TL Q
Sbjct: 331 AKVM-MEMGQGKGFAVVCFSSFEEATKAVDEM---NGPVLGSK--PLSVTLGQ 377
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+Y+KN+ + +
Sbjct: 195 HYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISTEAS 254
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F ++G ITS +++D G S+GFG + LYV
Sbjct: 255 DDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYV 314
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+Q F++ G I+S
Sbjct: 315 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSA 374
Query: 207 KIMR 210
K+MR
Sbjct: 375 KVMR 378
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+++ + + ++F K+GDI SS + QEGKS+G+GFV ++T ESA A+E+L
Sbjct: 243 NIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEEL 302
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNLDDD+ +E L
Sbjct: 303 HGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLR 362
Query: 122 EKFSEFGKITSLVISKDA 139
+ F+EFG ITS + +DA
Sbjct: 363 QMFAEFGPITSAKVMRDA 380
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELN 123
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K +R++
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 232
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ E + E ++ F + G I+S + R G S+G
Sbjct: 233 KFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 121
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 182 QDENGNSKGY 191
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + +++ N+Y+KNL D+T
Sbjct: 193 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVT 252
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ + F ++G +TS I++D G S+GFG + LY
Sbjct: 253 DDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELY 312
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R+E+A Y KN++DEVD+ +L++ F+ G I+S
Sbjct: 313 VGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPITS 372
Query: 206 VKIMR 210
K+MR
Sbjct: 373 AKVMR 377
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N ++KNL + + + + ++F ++G + SS + QE GKS+G+GF+ ++T ESA A+E+
Sbjct: 241 NIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEE 300
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L + ELYVG ++ +R +E S + NLY+KNLDD++ +E L
Sbjct: 301 LNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKL 360
Query: 121 VEKFSEFGKITSLVISKD 138
E F+ +G ITS + ++
Sbjct: 361 RELFAPYGPITSAKVMRE 378
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 46/234 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y++ A+E+
Sbjct: 62 YVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTR--RSLGYAYVNYNSTADGEKALEE 119
Query: 75 LQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L ++ + P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 120 LNYTLIKNRPCRIMWSQRDPALRKTGQ-------GNIFIKNLDAAIDNKALHDTFAAFGN 172
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K +YV K +R+
Sbjct: 173 ILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ--- 229
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
++FE M+ +Y KN++ +V + E ++ F Q G ++S I R + G S+G
Sbjct: 230 -SKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRG 282
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLYV 153
+LYV LD+ +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 60 SLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 119
Query: 154 ARAQKKAERKA-ILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
R I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 120 LNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVA 179
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 180 QDEHGNSKGY 189
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 139/265 (52%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG+I S K+ + G S+G+GFV
Sbjct: 116 MWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR----IQEGSSFNNLYVKNLDDDMT 116
+ E+A +AI+ + G + E+YV + + DR + ++F N+YVKN+ D
Sbjct: 176 HFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTG 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++ G ITS + KD G +GFG + L+V
Sbjct: 236 DEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ E Y KN++D +D+ +L++ F+ GTI+SV
Sbjct: 296 GRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSV 355
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR++ G SKG T E T
Sbjct: 356 KVMRSENGKSKGFGFVCFSTPEEAT 380
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 35/241 (14%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYS 63
P S+ + + +V L ++ L+ IFS G + S +V K S GY +V ++
Sbjct: 32 PESQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFN 91
Query: 64 TPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
E+ AIEKL A ++ + + R ++GS N+++KNL D+ + L +
Sbjct: 92 DHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSG--NIFIKNLHPDIDNKALHDT 149
Query: 124 FSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKA 160
FS FG I S I+ D G S+GFG + +YVA+ K
Sbjct: 150 FSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKK 209
Query: 161 ERKAIL---RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+R++ L +A F + KNI+ + + E +++F++ G I+S + + + G +
Sbjct: 210 DRQSKLDEAKANFTNV------YVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLR 263
Query: 218 G 218
G
Sbjct: 264 G 264
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 37/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +IDN L+ FS FG+I S KV G+SKGYG+V
Sbjct: 150 MWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYV 209
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y T E+A +AI K+ G + E++VG F +R +R + + N YVKNL T+ L
Sbjct: 210 HYETAEAATEAINKINGMLIAGTEVFVGHFQKRQER-PDIEDWTNCYVKNLPTQWTDADL 268
Query: 121 VEKFSEFGKITSLVISKDAN-GTSKGFG----------------------------SKVL 151
+F FG++ S V+ KD N T++GFG L
Sbjct: 269 RREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLEL 328
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV +AQK+ ER+ LR +F++++ ER Y KN++D + + EL++ F+ GTI+
Sbjct: 329 YVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTIT 388
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S ++MR G S+G T E + + M K
Sbjct: 389 SARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGK 424
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 43/197 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + + L + F FG + S+ V+ ++G+GFV Y + A A+E
Sbjct: 253 NCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEG 312
Query: 75 LQGATVE-----RMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDM 115
L G T + +ELYVG +R +R +E F+ NLYVKNLDD +
Sbjct: 313 LSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLL 372
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F+ +G ITS + +D+ G S+GFG K +Y
Sbjct: 373 QDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVY 432
Query: 153 VARAQKKAERKAILRAQ 169
VA AQ+K R+A L AQ
Sbjct: 433 VAFAQRKEVRRAQLEAQ 449
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 145/252 (57%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER Y KN++D +D+ +L+ FS G+I V
Sbjct: 263 GRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRV 322
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 323 KVMQQE-GQSKG 333
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
++ S N ++KN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A
Sbjct: 184 SKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 243
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDD 114
A+E++ G + ++VG ++ +R E G LYVKNLDD
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDT 303
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L +FS FG I + + + G SKGFG
Sbjct: 304 IDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFG 335
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+VKNL TID+ KL FS FG I KV+ QEG+SKG+GF+ +S+ E A A+ ++ G
Sbjct: 296 YVKNLDDTIDDEKLRNEFSSFGSIIRVKVM-QQEGQSKGFGFICFSSLEDATKAMIEMNG 354
Query: 78 A 78
Sbjct: 355 C 355
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE++L KFS G + S+ I +D T + G YV Q +KA
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRD-QVTRRSLG--YAYVNFLQLTDAQKA 67
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + L KN++ +D L ++FS G I S
Sbjct: 68 LDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSS 127
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K+M D+G SKG+ Q +
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQ 147
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 170/354 (48%), Gaps = 72/354 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L F +FG S+ + D +GTSKGFG K +YV
Sbjct: 204 DLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+++++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G +KG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAP 292
++ + + PV L YQ P IP + P P MAP
Sbjct: 383 MQRMASIRAVPNPV--------LNPYQPPSGYFMTAIPQTQNRPAYYPASQMAP 428
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 42/231 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S +V +S GY +V + P A A+E +
Sbjct: 14 YVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALETMN 73
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 74 FDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALFDTFSAFGNIL 126
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S + D +G SKG+G + ++V R + + ER+A L A
Sbjct: 127 SCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ KE +Y KN +++D++ LK+ F + G SVK+M + G SKG
Sbjct: 186 R----AKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKG 232
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L +++E +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDEHG-SKGYGFVHFETR 148
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 146/276 (52%), Gaps = 36/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN + FS FG+I S +V ++G S+GYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A +AI K+ G + +++VG F+ R++R + + F N+YVKN +++
Sbjct: 145 HFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+ L E F +GKITS + D G S+GFG K +Y
Sbjct: 205 DGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIY 264
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER + L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S
Sbjct: 265 VGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITS 324
Query: 206 VKIMRTDRGI-SKGHCMAIAQTKRERTSYLRIMYAK 240
K+M G SKG + E T + M +
Sbjct: 325 AKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGR 360
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 39/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN +D+ KL ++F +G I S++V+ Q GKS+G+GFV + P++A A+++L
Sbjct: 193 NVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKEL 252
Query: 76 QGATVER-MELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
+ ++YVG ++A+R+ + F NLYVKNLDD + +E L
Sbjct: 253 NDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERL 312
Query: 121 VEKFSEFGKITSLVISKDANGT-SKGFG-----------------------SKVLYVARA 156
+F+ +G ITS + D+ G SKGFG K LYVA A
Sbjct: 313 RREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALA 372
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +QF
Sbjct: 373 QRKEDRRAHLSSQF 386
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESA 68
R G+ N +VKNL ID+ +L + F+ +G I S+KV++ G +SKG+GFV +S+PE A
Sbjct: 292 RYQGV-NLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEA 350
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G + + LYV R+ DR
Sbjct: 351 TKAVTEMNGRIIVQKPLYVALAQRKEDR 378
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERK 163
+LYV +LD D+TE +L EKF + G + S+ + +D + S G+ YV Q +
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYA----YVNFHQPGDAER 67
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ FE ++ + KN++ ++D + FS G I S
Sbjct: 68 ALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILS 127
Query: 206 VKIMRTDRGISKGH 219
++ ++G S+G+
Sbjct: 128 CRVATDEQGNSRGY 141
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 219/480 (45%), Gaps = 104/480 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D++G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 SRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQ--------GPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPN------GFSPPPP 284
++ P L S P L QA + G + P PP P
Sbjct: 383 MQRVSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRP 442
Query: 285 SPLFLMAPDSVTQYRGAMMNG--HANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTN 342
S ++ P + + A + G A+ +P + + Q+ + I G + T
Sbjct: 443 SCASMVRPPVMPRCPPAHIGGIRQASTQVPRTVPHTQRVAN---IGTQTTGPSGVGCCTP 499
Query: 343 GN-------HRAAASNENL--------------SSMLVATSPDERKDILGQRLYPLVKKL 381
G AA S + + +SML A E+K ++G+RLYPL+ +
Sbjct: 500 GRPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTASMLAAAPLHEQKQMIGERLYPLIHDV 559
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDEHG 136
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 144/266 (54%), Gaps = 35/266 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGF 59
MWS + R G GN F+KNL + IDN LH FS FG+I S K+ + G SKG+GF
Sbjct: 114 MWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGF 173
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDM 115
V + + E+A +AI+ + G + E+YV P + R DR ++E ++F N+Y+KN+ +
Sbjct: 174 VHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLET 233
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
E+ E F + +TS+ + KD+ G +GFG + L+
Sbjct: 234 PEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLH 293
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E+ + E+ E Y KN++D +D+ L++ FS GTI+S
Sbjct: 294 VGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITS 353
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERT 231
VK+M T+ G SKG T E T
Sbjct: 354 VKVMTTENGKSKGFGFVCFSTPEEAT 379
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN++ + + F K + S + EGK +G+GFV Y T A A+E+L
Sbjct: 223 NVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEEL 282
Query: 76 QGATVERMELYVGPFIRRADRIQ------EGSSFN--------NLYVKNLDDDMTEEILV 121
G +L+VG ++ +R Q E S NL++KNLDD + +E L
Sbjct: 283 NGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLR 342
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+FS FG ITS+ + NG SKGFG K LYVA AQ+
Sbjct: 343 EEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 402
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 403 KDVRRSQLAQQIQ 415
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 32/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L T+ L+ IFS G + S +V K S GY +V ++ E+ AIEKL
Sbjct: 43 YVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIEKLN 102
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + R ++GS N+++KNL D+ + L + FS FG I S I+
Sbjct: 103 YTPIKGQPCRIMWSQRDPSLRKKGSG--NIFIKNLHADIDNKALHDTFSVFGNILSCKIA 160
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI-----------------------LRAQFER 172
D G SKGFG +V +A R+AI +++ E
Sbjct: 161 TDEVTGNSKGFG----FVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEE 216
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ +Y KNI+ E E E +++F + ++SV + + G +G
Sbjct: 217 AKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRG 263
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKK 159
+S +LYV LD ++E +L + FS G ++S+ + +DA TS G+ YV +
Sbjct: 37 TSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYA----YVNFNDYE 92
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
A R+AI + + ++ + + KN++ ++D L FS G
Sbjct: 93 AGRQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFG 152
Query: 202 TISSVKIMRTDR--GISKG 218
I S KI TD G SKG
Sbjct: 153 NILSCKIA-TDEVTGNSKG 170
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 136/249 (54%), Gaps = 35/249 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNLD +++
Sbjct: 189 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVS 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
E E F ++G+ITS IS+D G S+GFG + LY
Sbjct: 249 NEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 309 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITS 368
Query: 206 VKIMRTDRG 214
++MR G
Sbjct: 369 ARVMRDTAG 377
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 101/246 (41%), Gaps = 90/246 (36%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + + N + ++F K+G+I S+ + E GKS+G+GFV + ESA A+E+
Sbjct: 237 NVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEE 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 297 LNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVI--------------------------------------------- 135
+ F FG ITS +
Sbjct: 357 RDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVE 416
Query: 136 ---SKDAN----GTSKGFG-----------------------SKVLYVARAQKKAERKAI 165
SK+A G SKGFG K LYVA AQ+K RK+
Sbjct: 417 KSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
Query: 166 LRAQFE 171
L A +
Sbjct: 477 LEASIQ 482
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 137/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ ++T
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ F ++G +TS +++D G S+GFG + LY
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R+E+A Y KN++DEVD+ +L+Q FS+ G I+S
Sbjct: 315 VGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+GD+ SS + QE GKS+G+GFV +++ E A A+++
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L LYVG ++ +R +E S + NLY+KNLDD++ +E L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 121 VEKFSEFGKITSLVISKDA 139
+ FSEFG ITS + +D+
Sbjct: 363 RQLFSEFGPITSAKVMRDS 381
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 42/232 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+T A+E+L
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELN 123
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K +R+ +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----S 232
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
+F+ M+ +Y KNIN EV + E + F + G ++S + R + G S+G
Sbjct: 233 KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRG 284
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 182 QDENGNSKGY 191
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 144/252 (57%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 210 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFV 268
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 269 HFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMD 328
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D+ G SKGFG ++++V
Sbjct: 329 DERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 388
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER Y KN++D +D+ +L+ FS G+I V
Sbjct: 389 GRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRV 448
Query: 207 KIMRTDRGISKG 218
K+M+ + G SKG
Sbjct: 449 KVMQQE-GQSKG 459
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
++ S N ++KN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A
Sbjct: 310 SKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAA 369
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDD 114
A+E++ G + ++VG ++ +R E G LYVKNLDD
Sbjct: 370 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDT 429
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E L +FS FG I + + + G SKGFG
Sbjct: 430 IDDEKLRNEFSSFGSIIRVKVMQQ-EGQSKGFG 461
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+VKNL TID+ KL FS FG I KV+ QEG+SKG+GF+ +S+ E A A+ ++ G
Sbjct: 422 YVKNLDDTIDDEKLRNEFSSFGSIIRVKVM-QQEGQSKGFGFICFSSLEDATKAMIEMNG 480
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L + AQK +
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRD-QVTRRSLGYAYVNFLQLTDAQKALD 195
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 196 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKV 255
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 256 MSDDQG-SKGY 265
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FGDI S KV + GKS+G+ FV
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YST E+A AI+ + G + ++YVG + + +R+ + + F N+Y+KN+D ++T
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ + FG S+ +S+D G SKGFG K LY
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYA 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K+ER+A L+ E R E LY KN++DE D+ L+ F GTI+S
Sbjct: 300 GRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSS 359
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D G+S+G + E T + M K
Sbjct: 360 KVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 393
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E F+ G + S+ + +DA N + G + L +
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 107 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVG 166
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 167 TDENGKSRG 175
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 136/249 (54%), Gaps = 35/249 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNLD +++
Sbjct: 189 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVS 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
E E F ++G+ITS IS+D G S+GFG + LY
Sbjct: 249 NEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 309 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITS 368
Query: 206 VKIMRTDRG 214
++MR G
Sbjct: 369 ARVMRDTAG 377
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 100/246 (40%), Gaps = 90/246 (36%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + + N + ++F K+G+I S+ + E GKS+G+GF + ESA A+E+
Sbjct: 237 NVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEE 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 297 LNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVI--------------------------------------------- 135
+ F FG ITS +
Sbjct: 357 RDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVE 416
Query: 136 ---SKDAN----GTSKGFG-----------------------SKVLYVARAQKKAERKAI 165
SK+A G SKGFG K LYVA AQ+K RK+
Sbjct: 417 KSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
Query: 166 LRAQFE 171
L A +
Sbjct: 477 LEASIQ 482
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 136/265 (51%), Gaps = 34/265 (12%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R +G GN F+KNL IDN LH F+ FG++ S KV + GKS+GYG+V Y T ESA
Sbjct: 236 RKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAE 295
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMTEEILVEKFS 125
AI+ + + +++VG I R +R I E + F N+YVKNLD D+TE F
Sbjct: 296 AAIKAVNRMLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFE 355
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
EFG ITS V+ D G S+GFG KVL+V RAQKK+ER
Sbjct: 356 EFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSER 415
Query: 163 KAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSVKIMRTDRGI 215
++ L E ++ER Y +N V + +L+ F GTI+S K+MR +R I
Sbjct: 416 QSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDI 475
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAK 240
SKG T E T + M K
Sbjct: 476 SKGFGFVCFSTPDEATKAVTEMNNK 500
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 46/246 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L T+ L +IF+ G + S +V +S GY +V Y L
Sbjct: 177 YVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNY------------LN 224
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
A ER + P +R+ + N+++KNLD+ + + L + F+ FG + S ++
Sbjct: 225 AADGERRD----PALRKTGQ-------GNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVA 273
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILR--------------------AQFERMRKE 176
D G S+G+G V Y +A KA+ R +Q + R +
Sbjct: 274 TDETGKSRGYGY-VHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQSQIDEARAQ 332
Query: 177 RAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235
+Y KN++ ++ E E + F + G I+S + + G S+G + E +
Sbjct: 333 FTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVN 392
Query: 236 IMYAKQ 241
M+ K+
Sbjct: 393 EMHEKE 398
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV LD ++E +L E F+ G + S+ + +DA T + G + A R
Sbjct: 175 SLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAV-TRRSLGYAYVNYLNAADGERRDP 233
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
LR + + ++ KN+++ +D L F+ G + S K+ + G S+G+
Sbjct: 234 ALR------KTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGY 283
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 202/451 (44%), Gaps = 84/451 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 135 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDLGQSKCFGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG + + DR + +++ N+YVKN+D + +
Sbjct: 195 HYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFS 254
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F+ +GKITS+ + KD +G SKGFG + +YV
Sbjct: 255 EKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYV 314
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN++D++D +L++ F GTI+S
Sbjct: 315 GRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSA 374
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M D G S+G T E T + M + G P++ L QR Q
Sbjct: 375 KVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGK-----PLYVALAQRKDVRRSQ 429
Query: 263 VYQAPDFRHGGMIPN-----GFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPM----PL 313
+ Q R+ + N GF P M P Q G N P P
Sbjct: 430 LEQQIQARNQMRMQNAAAAAGF------PGQFMPPMYYGQQGFFPPGGRGNAPFPGPNPQ 483
Query: 314 MLSNLQKPSYNYPISQPRAG------------------QAAANNLTNGNHRA-------- 347
M+ +P +P PR G Q A R
Sbjct: 484 MMMRRGQPGQPFPEQWPRPGGPNGQPVPVYGIPPQFPDQRAQQQQQQQQQRGYYPGQAGV 543
Query: 348 AASNENLSSMLVATSPDERKDILGQRLYPLV 378
++L++++ + P+++K ILG+ LYP +
Sbjct: 544 KVPAKDLAAIISSVPPEQQKRILGEELYPRI 574
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 116/276 (42%), Gaps = 63/276 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AI++
Sbjct: 64 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKFEDGEKAIDE 121
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L + +E + + D S N+++KNL + + L + FS FG+I S
Sbjct: 122 LNYSLIENRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCK 179
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + +YV + K +R+ ++FE
Sbjct: 180 VATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRE----SKFE 235
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------HCMA 222
M+ +Y KNI+ E E E + F+ G I+S+ + + G SKG H A
Sbjct: 236 EMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSA 295
Query: 223 I--------------------AQTKRERTSYLRIMY 238
+ AQ KRERT L+ Y
Sbjct: 296 VEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQY 331
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FGDI S KV + GKS+G+ FV
Sbjct: 122 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YST E+A AI+ + G + ++YVG + + +R+ + + F N+Y+KN+D ++T
Sbjct: 182 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ + FG S+ +S+D G SKGFG K LY
Sbjct: 242 DAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYA 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K+ER+A L+ E R E LY KN++DE D+ L+ F GTI+S
Sbjct: 302 GRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSS 361
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D G+S+G + E T + M K
Sbjct: 362 KVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 395
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E F+ G + S+ + +DA N + G + L +
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 109 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVG 168
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 169 TDENGKSRG 177
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 146/276 (52%), Gaps = 37/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E F N+YVKN D
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYN 225
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------SKV------L 151
+E L + F++FG ITS + G SKGFG S + L
Sbjct: 226 KETLEKVFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 284
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ LK+ F G I+
Sbjct: 285 HVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNIT 344
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E TS + M +K
Sbjct: 345 SAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 380
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+KFG+I S +V+ EGKSKG+GFV ++ PE A A++ L
Sbjct: 214 NVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 272
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+T+E ++L+V ++++R E + NLYVKNLD+ + ++
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F +G ITS + D NG SKGFG SK LYVA
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIG 392
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 393 QRKEDRRAQLASQY 406
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 98 QEGSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVAR 155
Q GSS+ +LYV +L D+ E IL EKFS G + S+ + +D N T G YV
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRD-NATRLSLG--YAYVNF 80
Query: 156 AQKKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYF 197
Q +A+ FE MR+ A KN++ +D + F
Sbjct: 81 QQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTF 140
Query: 198 SQCGTISSVKIMRTDRGISKGH 219
S G I S K+ + G SKG+
Sbjct: 141 SLFGNILSCKVAIDEDGFSKGY 162
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FGDI S KV + GKS+G+ FV
Sbjct: 122 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YST E+A AI+ + G + ++YVG + + +R+ + + F N+Y+KN+D ++T
Sbjct: 182 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ + FG S+ +S+D G SKGFG K LY
Sbjct: 242 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYA 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K+ER+A L+ E R E LY KN++DE D+ L+ F GTI+S
Sbjct: 302 GRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSS 361
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D G+S+G + E T + M K
Sbjct: 362 KVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 395
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E F+ G + S+ + +DA N + G + L +
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 109 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVG 168
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 169 TDENGKSRG 177
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 139 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 198
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + + ++YVG I + DR + ++F N+YVKN+ + T
Sbjct: 199 HYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEAT 258
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F+++G +TS +++D+ G S+GFG + LYV
Sbjct: 259 DEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYV 318
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D++D+ +L+Q FS+ G I+S
Sbjct: 319 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSA 378
Query: 207 KIMR 210
K+MR
Sbjct: 379 KVMR 382
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN++ + + +F+K+GD+ SS + EGKS+G+GFV ++T E A A+E+L
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEEL 306
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLR 366
Query: 122 EKFSEFGKITSLVISKDA 139
+ FSE+G ITS + +DA
Sbjct: 367 QMFSEYGPITSAKVMRDA 384
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 47/244 (19%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
P S A L +V L ++ L ++FS+ G + S +V +S GY +V Y+
Sbjct: 61 PQSSASL------YVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYN 114
Query: 64 TPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
+ A+E+L +G M P +R+ + N+++KNLD + +
Sbjct: 115 STSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNK 167
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 168 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGY 227
Query: 156 AQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
K +R++ +FE M+ +Y KNI+ E + E + F++ G ++S + R G
Sbjct: 228 HIPKKDRQS----KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEG 283
Query: 215 ISKG 218
S+G
Sbjct: 284 KSRG 287
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +D N S G K L
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEE 125
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 126 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 185
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 186 QDENGNSKGY 195
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 136 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGNSKGYGFV 195
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR + ++F N+YVKN+ D T
Sbjct: 196 HYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADAT 255
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F +FG +TS +++D G ++GFG + LYV
Sbjct: 256 DDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYV 315
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L++ F+ G I+S
Sbjct: 316 GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLRELFAPYGAITSA 375
Query: 207 KIMR 210
K+MR
Sbjct: 376 KVMR 379
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + ++F KFGD+ S+ + + GK++G+GFV + E A A+++L
Sbjct: 244 NIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDEL 303
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A RI++ S + NLYVKNL+DD+ +E L
Sbjct: 304 NGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLR 363
Query: 122 EKFSEFGKITSLVISKD 138
E F+ +G ITS + +D
Sbjct: 364 ELFAPYGAITSAKVMRD 380
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 65 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTIDGEKALEE 122
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 123 LNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGN 175
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K ++V K +R+
Sbjct: 176 ILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ--- 232
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++FE M+ +Y KNI + + + ++ F + G ++S + R + G ++G
Sbjct: 233 -SKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRG 284
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/460 (31%), Positives = 203/460 (44%), Gaps = 100/460 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 123 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKCFGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D T
Sbjct: 183 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYT 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F+ +GKITS+ + KD +G SKGFG + +YV
Sbjct: 243 EEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 303 GRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSA 362
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M D G SKG T E T + M + P++ L QR Q
Sbjct: 363 KVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQR-----MVNNKPLYVALAQRKDVRRSQ 417
Query: 263 VYQAPDFRH---------GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP- 312
+ Q R+ G +P F P P+F Q NG N P P
Sbjct: 418 LEQQIQARNQMRMQNAAAAGGLPGQFMP----PMFY------GQQGFFPPNGRGNAPFPG 467
Query: 313 ----LMLSNLQKPSYNYPISQPRAGQAAA-----------NNLTNGN------------- 344
+M+ +P +P PR G NG
Sbjct: 468 PNPQMMMRGRGQP---FPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNVRPPQQQQQQQP 524
Query: 345 ------HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+R + +L++++ + D++K ILG+ LYP +
Sbjct: 525 RGGYYPNRNQTNKRDLAAIIASVPQDQQKRILGEELYPRI 564
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 63/276 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 52 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKFEDGEKAIEE 109
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L +E + + D S N+++KNL + + L + FS FGKI S
Sbjct: 110 LNYTPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 167
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + ++V + K +R+ ++FE
Sbjct: 168 VATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE----SKFE 223
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------HCMA 222
M+ +Y KNI+ E E ++ F+ G I+S+ + + G SKG H A
Sbjct: 224 EMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAA 283
Query: 223 I--------------------AQTKRERTSYLRIMY 238
+ AQ KRER L+ Y
Sbjct: 284 VKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 319
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 146/276 (52%), Gaps = 37/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E F N+YVKN D
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYN 225
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------SKV------L 151
+E L + F++FG ITS + G SKGFG S + L
Sbjct: 226 KETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 284
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ LK+ F G I+
Sbjct: 285 HVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNIT 344
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E TS + M +K
Sbjct: 345 SAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 380
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+KFG+I S +V+ EGKSKG+GFV ++ PE A A++ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 272
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+T+E ++L+V ++++R E + NLYVKNLD+ + ++
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F +G ITS + D NG SKGFG SK LYVA A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 393 QRKEDRRAQLASQY 406
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 98 QEGSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVAR 155
Q GSS+ +LYV +L D+ E IL EKFS G + S+ + +D N T G YV
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRD-NATRLSLG--YAYVNF 80
Query: 156 AQKKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYF 197
Q +A+ FE MR+ A KN++ +D + F
Sbjct: 81 QQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTF 140
Query: 198 SQCGTISSVKIMRTDRGISKGH 219
S G I S K+ + G SKG+
Sbjct: 141 SLFGNILSCKVAIDEDGFSKGY 162
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 154/303 (50%), Gaps = 64/303 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 239 AKQ 241
++
Sbjct: 383 MQR 385
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDD 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L + FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L ++ +RM RA
Sbjct: 364 YVALAQRKEERQAYLTNEYMQRMASVRA 391
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 209/461 (45%), Gaps = 116/461 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++V F R +R E F N+YVKNL D+
Sbjct: 144 HFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAMEFTNVYVKNLQMDID 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E FS+FGK S+ + +D +G S+GFG ++LYV
Sbjct: 204 EQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---------LY-KNINDEVDEIELKQYFSQCGTI 203
RAQK AER+ L+ +F++M++ + + LY KN++D +D L++ FS G I
Sbjct: 264 GRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSIDNERLRKEFSPYGVI 323
Query: 204 SSVKIMRTDRGISKGH--------------------CM--------AIAQTKRERTSYLR 235
+S K+M T+ G SKG C+ A+AQ K ER + L
Sbjct: 324 TSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYVALAQRKDERKAILT 382
Query: 236 IMYAKQ---------GPGLASTIFPVH---PTLYQ-RAL-----QVYQAPDFRHGGMIPN 277
+ +Q GP L S PV PT+ Q RA QV Q F+ ++P
Sbjct: 383 NQFMQQRLSNVWALGGPHLGSFQQPVSYFLPTVPQVRACLQPDSQVEQEESFK-ANIVPR 441
Query: 278 GFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAA 337
L+ P++ + N + + P ++ + +P
Sbjct: 442 -----------LLLPETAGGFHPVSKRADENPSLRMC------PRHHVQVQEPAVCIPGQ 484
Query: 338 NNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
LT SML A ++K ++G+RLYPL+
Sbjct: 485 EPLT-------------VSMLAAAPLHKQKQMIGERLYPLI 512
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDV-ATRRSLGYA--YINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
A+ FE ++ + + KN+ + +D L FS G
Sbjct: 64 DAELALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ D G
Sbjct: 124 NILSCKVVCDDHG 136
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 141/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L FS FG+I SSK+ + GKSKG+GFV
Sbjct: 121 MWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFV 180
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + F N+YVKN+D + T
Sbjct: 181 HFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETT 240
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F + G +TS+ + + +G KGFG + L+V
Sbjct: 241 DEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFV 300
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D+ +L++ F+ G I+SV
Sbjct: 301 GRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSV 360
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG + E T
Sbjct: 361 KVMRTENGKSKGFGFVCFSSPEEAT 385
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 46/251 (18%)
Query: 3 STPNSEARLSGIGNA-----FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKG 56
ST +SE++ +G + +V L ++ L+ +FS G + S +V K S G
Sbjct: 30 STASSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLG 89
Query: 57 YGFVQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
Y +V +S E+ AIEKL +G M P +R+ N+++KNL
Sbjct: 90 YAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRK-------KGHGNIFIKNL 142
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
+ D+ + L + FS FG I S I+ D G SKGFG
Sbjct: 143 NQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNG 202
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+ +YVA + ER +Q E + +Y KNI+ E + E K++F + GT++SV
Sbjct: 203 QEIYVAPHLTRKERD----SQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVA 258
Query: 208 IMRTDRGISKG 218
+ R G KG
Sbjct: 259 LERGPDGKLKG 269
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 205/443 (46%), Gaps = 74/443 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ID+ L+ FS FG+I S KVV SKG+GFV
Sbjct: 84 MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Y + +SA AI K+ G + +++VGPF +R Q F N++ KNL +D+T +
Sbjct: 144 HYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFTNVFFKNLAEDVTSDQ 203
Query: 120 LVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLYVAR 155
L E + +G IT++ I D G SKGF K LY R
Sbjct: 204 LKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGR 263
Query: 156 AQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
AQKK ER+A L+ FE + + LY KNI+D +D +L++ FSQ GTI+S +M+ D+
Sbjct: 264 AQKKIEREAELKHTFE-TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKA 322
Query: 215 -ISKGHCMAIAQTKRERTSY-------------LRIMYAKQGPGLASTIFPVHPTLYQRA 260
SKG + E T L + A++ + + H ++
Sbjct: 323 TTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKAG 382
Query: 261 LQVYQAPDFRHGGMIPNGFSPPPPSPLFLM------------APDSV--TQYRGAMMNGH 306
++ AP + G P F+P P +P + AP V QY + G
Sbjct: 383 MRQTMAPAYSGG---PVFFTPAPVTPAVVYQQMMPRPRNWNGAPVGVPGNQYGMNYVRGG 439
Query: 307 ANFPMPLMLSNLQKPSYNYP------ISQPRAGQAAANNLTNGNHRAA--ASNE---NLS 355
P P N Q+P+ P +QP A Q A + +AA AS E LS
Sbjct: 440 GQ-PRP----NGQRPTGPRPNGQRPDSAQPIATQQPAVDQATQQPQAASGASQEAAPTLS 494
Query: 356 SMLVATSPDERKDILGQRLYPLV 378
S+L + D++ LG+ LYPL+
Sbjct: 495 SILALPTRDQQNVALGELLYPLI 517
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 146/276 (52%), Gaps = 37/276 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + ++G SKGYGFV
Sbjct: 43 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFV 102
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E F N+YVKN D
Sbjct: 103 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYN 162
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------SKV------L 151
+E L + F++FG ITS + G SKGFG S + L
Sbjct: 163 KETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 221
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ LK+ F G I+
Sbjct: 222 HVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNIT 281
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S K+M + G SKG + E TS + M +K
Sbjct: 282 SAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 317
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+KFG+I S +V+ EGKSKG+GFV ++ PE A A++ L
Sbjct: 151 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 209
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+T+E ++L+V ++++R E + NLYVKNLD+ + ++
Sbjct: 210 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 269
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F +G ITS + D NG SKGFG SK LYVA A
Sbjct: 270 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 329
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 330 QRKEDRRAQLASQY 343
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 138/273 (50%), Gaps = 33/273 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +ID+ L+ FS FG+I S KV SKG+GFV
Sbjct: 89 MWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVATDGNRHSKGFGFV 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTE 117
+ E+A AIEK+ G + M++YVG FI R DR + N+++KN +D T+
Sbjct: 149 HFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYTNVFIKNFGEDFTD 208
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+L + F ++G I S V+ KD G SKGFG + +Y
Sbjct: 209 TMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCG 268
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVK 207
RAQKK ER L + E R+ER Y KN+ D + E +LK FS+ G+I+S K
Sbjct: 269 RAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLKSEFSKFGSITSAK 328
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
IM + G SKG + E T + M +
Sbjct: 329 IMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGR 361
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 39/197 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN + L+ +F K+G I S+ V+ EG SKG+GFV + + E+A A++ +
Sbjct: 196 NVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 76 QGATVERMELYVG----------PFIRRAD--RIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ V ++Y G +RR + R + S + NLY+KNL+D + EE L
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+FS+FG ITS I D G SKGFG SK LYVA AQ+
Sbjct: 316 SEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 375
Query: 159 KAERKAILRAQFERMRK 175
K ER+A L AQ RM++
Sbjct: 376 KEERQAHLAAQ--RMQR 390
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL T+ KL FSKFG I S+K++ + G SKG+GFV +S+PE A
Sbjct: 293 SRYQGV-NLYIKNLEDTLGEEKLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEA 351
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 352 TKAVTEMNGRIVVSKPLYVALAQRKEER 379
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 136/252 (53%), Gaps = 38/252 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN L+ FS FG+I S KVV +G SKGYGFV
Sbjct: 84 MWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI--QEGSSFNNLYVKNLDDDMTEE 118
Y T E+A AI K+ G + +YVG FI R +R + F N+Y+KNL + TEE
Sbjct: 144 HYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEE 203
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L F FG + S V+ KD + F G K +YV R
Sbjct: 204 DLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVGR 263
Query: 156 AQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQC--GTISSV 206
AQKK+ER++ LR ++R+ERA+ Y KN++D V++ EL + FS G I+S
Sbjct: 264 AQKKSERESFLR----KLREERAQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSC 319
Query: 207 KIMRTDRGISKG 218
K+M D+G S+G
Sbjct: 320 KVMSDDKGNSRG 331
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 37/187 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL L + F FG +QS+ ++ + + FV + E+A A E+L
Sbjct: 190 NIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEEL 249
Query: 76 QGATVERMELYVG---------PFIR--RADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
G + E+YVG F+R R +R Q+ N LY+KNLDD + +E L + F
Sbjct: 250 NGRKLGDKEVYVGRAQKKSERESFLRKLREERAQKYQGIN-LYIKNLDDTVNDEELHKLF 308
Query: 125 SE--FGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKK 159
S FG+ITS + D G S+GFG +K +YVA A++K
Sbjct: 309 SALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALAERK 368
Query: 160 AERKAIL 166
R A L
Sbjct: 369 DVRSAKL 375
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 154/303 (50%), Gaps = 64/303 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 239 AKQ 241
++
Sbjct: 383 MQR 385
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDD 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L + FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLQKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L ++ +RM RA
Sbjct: 364 YVALAQRKEERQAYLTNEYMQRMASVRA 391
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 154/303 (50%), Gaps = 64/303 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D++D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 239 AKQ 241
++
Sbjct: 383 MQR 385
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDD 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L + FS FG ITS + + G SKGFG +K L
Sbjct: 305 IDDERLQKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L ++ +RM RA
Sbjct: 364 YVALAQRKEERQAYLTNEYMQRMASVRA 391
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 157/318 (49%), Gaps = 42/318 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SG+GN F+KNL ++D+ L + FS FG I SSKVV + G S+GY FV
Sbjct: 222 MWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFV 280
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE + GA + L+VG F R R E F NLY+KN M
Sbjct: 281 HFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSRAGEFTNLYIKNFGGRMD 340
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L FSE+GK S+ + DA+G S+GFG + L+V
Sbjct: 341 DARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFV 400
Query: 154 ARAQKKAERKAILRAQFER------MRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ+KAER+A LR FE+ R + A+LY KN++D VDE L++ FS G +S V
Sbjct: 401 GRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLRREFSGFGAVSRV 460
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---V 263
KIMR + G SKG + + E L M G L S + +R LQ +
Sbjct: 461 KIMREE-GRSKGFGLICFSSADEAARALAEM---NGRVLGSKPLSIALAQSRRCLQPRGL 516
Query: 264 YQAPDFRHGGMIPNGFSP 281
A G + P G P
Sbjct: 517 AAAGPCSRGALQPQGLQP 534
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +LD ++TE+ L KFS G + S+ I +D T + G L +A AQ+ +
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLL-TRRSLGYAYVNFLRLADAQRALD 207
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
+LR + R+ + + + KN++ VD+ L + FS G I S K+
Sbjct: 208 TMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILSSKV 267
Query: 209 MRTDRGISKGH 219
+ +RG S+G+
Sbjct: 268 VSDERG-SRGY 277
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 135/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR + ++F N+YVKN+ + T
Sbjct: 195 HYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 254
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE E F +FG +TS +++D +G S+GFG + LY
Sbjct: 255 EEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R E+A Y KN++DE+D+ +L++ F+ G I+S
Sbjct: 315 VGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDDEKLRELFAPFGAITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + ++F KFGD+ S+ + E GKS+G+GFV + E A A+++
Sbjct: 243 NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDE 302
Query: 75 LQGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L G + +LYVG +RR A R+++ S + NLYVKNLDD++ +E L
Sbjct: 303 LNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDDEKL 362
Query: 121 VEKFSEFGKITSLVISKD 138
E F+ FG ITS + +D
Sbjct: 363 RELFAPFGAITSAKVMRD 380
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
TP + + +V L ++ L ++FS+ G + S +V +S GY +V Y
Sbjct: 50 TPTNAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNY 109
Query: 63 STPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
+T A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 110 NTTVDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQ-------GNVFIKNLDVAIDN 162
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + F+ FG I S +++D +G SKG+G K ++V
Sbjct: 163 KALHDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVG 222
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR-TD 212
K +R+ ++FE M+ +Y KNI E E E ++ F + G ++S + R T+
Sbjct: 223 HHIPKKDRQ----SKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTE 278
Query: 213 RGISKG 218
G S+G
Sbjct: 279 SGKSRG 284
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 135/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR + ++F N+YVKN+ + T
Sbjct: 195 HYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 254
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE E F +FG +TS +++DA G S+GFG + LY
Sbjct: 255 EEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R E+A Y KN++D++D+ +L++ F G+I+S
Sbjct: 315 VGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKLRELFQSFGSITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + ++F KFGD+ S+ + E GKS+G+GFV + E A A+++
Sbjct: 243 NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDE 302
Query: 75 LQGATVERMELYVG---------PFIRR---ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L G + +LYVG +RR A RI++ S + NLYVKNLDDD+ +E L
Sbjct: 303 LNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKL 362
Query: 121 VEKFSEFGKITSLVISKD 138
E F FG ITS + +D
Sbjct: 363 RELFQSFGSITSAKVMRD 380
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 46/248 (18%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFV 60
TP + + +V L +++ L ++FS+ G + S +V +S+ +S GY +V
Sbjct: 50 TPTNAPHPQASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISR--RSLGYAYV 107
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y+T A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 108 NYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQ-------GNVFIKNLDVAI 160
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+ L + F+ FG I S +++D +G SKG+G K ++
Sbjct: 161 DNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVF 220
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR- 210
V K +R+ ++FE M+ +Y KNI E E E ++ F + G ++S + R
Sbjct: 221 VGHHIPKKDRQ----SKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARD 276
Query: 211 TDRGISKG 218
+ G S+G
Sbjct: 277 AETGKSRG 284
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 87 VGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA------- 139
GP A Q +S LYV LD +TE +L E FS+ G + S+ + +DA
Sbjct: 47 AGPTPTNAPHPQASAS---LYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLG 103
Query: 140 ----NGTSKGFGSKVL-YVARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEI 191
N + G K L + K I+ +Q + ++ + KN++ +D
Sbjct: 104 YAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNK 163
Query: 192 ELKQYFSQCGTISSVKIMRTDRGISKGH 219
L F+ G I S K+ + + G SKG+
Sbjct: 164 ALHDTFAAFGNILSCKVAQDESGASKGY 191
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG+I S K+ + GKSKG+GFV
Sbjct: 124 MWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
+ +A++A++ + G + E+YV + + DR ++E ++F N+YVKN+D D
Sbjct: 184 HFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTP 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ FS++G ITS+ + KD+ G +GFG + LYV
Sbjct: 244 EDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D+ +L+ F+ G+I+S
Sbjct: 304 GRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSA 363
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR + G SK T E T
Sbjct: 364 KVMRNEEGKSKNFGFVCFSTPEEAT 388
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + +FSK+G I S + EGK +G+GF+ + + A A+E+L
Sbjct: 232 NVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEEL 291
Query: 76 QGATVERMELYVGPFIRRADRIQE------GSSFN--------NLYVKNLDDDMTEEILV 121
+ +LYVG ++ +R+QE S NL+VKNLDD + +E L
Sbjct: 292 NDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLE 351
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F+ FG ITS + ++ G SK FG K LYVA AQ+
Sbjct: 352 AEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 411
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 412 KDVRRSQLAQQIQ 424
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L+ IFS G + S +V K S GY +V ++ ES AIEKL
Sbjct: 53 YVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLN 112
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ N+++KNL D+ + L + FS FG I
Sbjct: 113 YSPIKGKPCRIMWSQRDPALRK-------KGAGNIFIKNLHPDIDNKALHDTFSVFGNIL 165
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S I+ D G SKGFG + +YVA+ K +R++ L
Sbjct: 166 SCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKL-- 223
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E ++ +Y KN++ + E E FS+ G I+S+ + + G +G
Sbjct: 224 --EEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRG 272
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL +ID+ KL F+ FG I S+KV+ ++EGKSK +GFV +STPE A
Sbjct: 329 AKYQGV-NLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEA 387
Query: 69 LDAIEKLQGATVERMELYVG----PFIRRADRIQEGSSFNNL 106
AI + V LYV +RR+ Q+ + N L
Sbjct: 388 TKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQL 429
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERK 163
+LYV LD ++E +L + FS G +TS+ + +DA TS G+ YV ++ R
Sbjct: 51 SLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYA----YVNFNDHESGRT 106
Query: 164 AILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
AI + + +RK+ A KN++ ++D L FS G I S
Sbjct: 107 AIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILS 166
Query: 206 VKIMRTDRGISKG 218
KI + G SKG
Sbjct: 167 CKIATDETGKSKG 179
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 149/277 (53%), Gaps = 39/277 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + +EG SKGYGFV
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E + N+YVKN D
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYN 225
Query: 117 EEILVEKFSEFGKITSL-VISKDANGTSKGFG-------------------SKV------ 150
+E L + F+++G ITS V++ D G SKGFG S V
Sbjct: 226 KESLEKLFAKYGTITSCDVMTSD--GKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLK 283
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTI 203
L+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ LK+ F G I
Sbjct: 284 LHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNI 343
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+S K+M + G SKG + E T+ + M +K
Sbjct: 344 TSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSK 380
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+K+G I S V+ S +GKSKG+GFV ++ PE A A++ L
Sbjct: 214 NVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQAL 272
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+ VE ++L+V ++++R E + NLYVKNLD+ + +E
Sbjct: 273 NDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEA 332
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F FG ITS + D NG SKGFG SK LYVA A
Sbjct: 333 LKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALA 392
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 393 QRKEDRRAQLASQY 406
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 100 GSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
GSS+ +LYV +L D+ E IL EKFS G + S+ + +D N T G YV Q
Sbjct: 26 GSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRD-NATRLSLG--YAYVNFQQ 82
Query: 158 KKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQ 199
+A+ FE MR+ A KN++ +D + FS
Sbjct: 83 PADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSL 142
Query: 200 CGTISSVKIMRTDRGISKGH 219
G I S K+ + G SKG+
Sbjct: 143 FGNILSCKVAIDEEGSSKGY 162
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 200/423 (47%), Gaps = 93/423 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL DM
Sbjct: 144 HFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMD 203
Query: 117 EEILVEKFSEF-----GKITSLVISKDANGTSKGFG-----------------------S 148
E L E FS+F GK+ S+ + +D +G S+GFG
Sbjct: 204 EWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRG 263
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY---------KNINDEVDEIELKQYFSQ 199
++LYV RAQK+ ER+ L+ +FE+M+++R Y KN++D +++ +L++ FS
Sbjct: 264 RLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSP 323
Query: 200 CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
G I+S K+M T+ G SKG + E T + M G P++ L QR
Sbjct: 324 YGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEM-----NGRIVGTKPLYVALAQR 377
Query: 260 ALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGH----ANFPMPLML 315
+ ++ N + M S + G + G AN+ +P +
Sbjct: 378 KEE--------RKAILTNQY----------MQRLSTVRALGGPLLGSFQQPANYFLP-AV 418
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLY 375
+Q+P+ P +P LT +SML A E+K ++G+RLY
Sbjct: 419 PQVQEPAVCIPGKEP---------LT-------------ASMLAAAPLHEQKQMIGERLY 456
Query: 376 PLV 378
PL+
Sbjct: 457 PLI 459
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLGYA--YINFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ FE ++ + + KN+ D +D L FS G I S
Sbjct: 69 LDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 207 KIMRTDRG 214
K++ D G
Sbjct: 129 KVVCDDHG 136
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 148/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M T+ G SKG + E T + M
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDEHG 136
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 134/245 (54%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNLD ++T
Sbjct: 189 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
E E F ++G ITS I+ D+ G S+GFG + LY
Sbjct: 249 NEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 309 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITS 368
Query: 206 VKIMR 210
++MR
Sbjct: 369 ARVMR 373
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + + N + ++F K+GDI S+ + S+ GKS+G+GFV + ESA A+E+
Sbjct: 237 NVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEE 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 297 LNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
+ F FG ITS + +D
Sbjct: 357 RDLFIGFGNITSARVMRD 374
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 148/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M T+ G SKG + E T + M
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDEHG 136
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 146/265 (55%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG + E T
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K++ + G
Sbjct: 124 NILSCKVVCDEHG 136
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 171/363 (47%), Gaps = 91/363 (25%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 261 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 320
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 321 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 379
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQY 298
QR V P+ + N + P PPS F MA TQ
Sbjct: 380 M------------------QRMASVRAVPN-----PVINPYQPAPPSGYF-MAAIPQTQN 415
Query: 299 RGA 301
R A
Sbjct: 416 RAA 418
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 200/426 (46%), Gaps = 76/426 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R GN F+KNL +ID+ LH FS FG+I S K+ ++G SKGYGFV
Sbjct: 102 MWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFV 161
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSS---FNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I R +R + G S F N+YVKN+ D+T
Sbjct: 162 HYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVT 221
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F ++G ITS VI++D +GTSKGFG + LYV
Sbjct: 222 DEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYV 281
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQY-------FSQCGTISSV 206
+RAQKK ER+ LR Q+E + E+ Y+ +N V ++ FS G I+S
Sbjct: 282 SRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSA 341
Query: 207 KIMRTDR-GISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------ 259
KIMR ++ IS+G + + T R + G + S P++ + QR
Sbjct: 342 KIMRDEKTNISRGFGFVCFTSPEDAT---RAVTEMNGRIIGSK--PIYVAIAQRKEVRRS 396
Query: 260 --ALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSN 317
+Q+ Q + M P+ F PP+ A + R PMP
Sbjct: 397 QLEIQMAQRNQLKQAMMPPSVF---PPTMYGPPAGMAAAASRSVFQGA----PMPSF--- 446
Query: 318 LQKPSYNYPISQ-----PRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQ 372
P+ YP +Q P+ + A +A ++ L P+ ++ +LG+
Sbjct: 447 ---PAQGYPATQRLSPPPQPAKPA----------ESAVRPLIAQDLENFPPETQRQMLGE 493
Query: 373 RLYPLV 378
RLYPL+
Sbjct: 494 RLYPLM 499
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK- 163
+LYV LD +TE +L E F+ G ++S+ + +DA T + G + R AER
Sbjct: 29 SLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDA-VTRRSLGYAYVNFHR-MADAERAL 86
Query: 164 -----AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSVK 207
++++ + R+ + + KN++ +D L FS G I S K
Sbjct: 87 ETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILSCK 146
Query: 208 IMRTDRGISKGH 219
I ++G SKG+
Sbjct: 147 IAHDEQGNSKGY 158
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 160/293 (54%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D +G S+GFG +++YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE++++ER Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ ++ L ++F +G ITS + + G SKGFG +K L
Sbjct: 305 IDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LY+ +L D+TE +L EKFS G I S+ + +D A S + Y+ Q
Sbjct: 7 GYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN+++ +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K++ + G S+G+
Sbjct: 123 GNILSCKVVCDEHG-SRGY 140
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 160/293 (54%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D +G S+GFG +++YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE++++ER Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ ++ L ++F +G ITS + + G SKGFG +K L
Sbjct: 305 IDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LY+ +L D+TE +L EKFS G I S+ + +D A S + Y+ Q
Sbjct: 7 GYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN+++ +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K++ + G S+G+
Sbjct: 123 GNILSCKVVCDEHG-SRGY 140
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 163/322 (50%), Gaps = 49/322 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +TID+ LH FS FG I S K+ + E +S G+GFV
Sbjct: 139 MWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSAFGKILSCKIAMDGE-RSLGHGFV 197
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y T E A +AI+ + G + ++YVG I + +R I+E S F N+YVKN+D +
Sbjct: 198 HYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERSSTIEEKRSKFTNIYVKNIDASVD 257
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ E F FG S V+ D G SK F G K +YV
Sbjct: 258 QKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYV 317
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E++R+E+ Y KNI++ +D+ +L+Q FS G I+S
Sbjct: 318 GRAQKKFEREEELRRQYEKIREEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITST 377
Query: 207 KIMRTDR-GISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR------ 259
KIM ++ GISKG E T + M + LA+ P++ L QR
Sbjct: 378 KIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRM---LANK--PIYVALAQRKEVRRQ 432
Query: 260 --ALQVYQAPDFRHGGMIPNGF 279
A Q+ Q H M+P G+
Sbjct: 433 QLAAQMQQRAMRAHQQMMPPGY 454
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY---STPESALDAIE 73
++ +L ++ L ++F+ G + S +V +S GYG++ Y + E ALD +
Sbjct: 68 YIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAERALDTLN 127
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G V M P +RRA N+++KNL + + L + FS FGKI
Sbjct: 128 YTTVRGNPVRIMWSNRDPALRRA-------GTGNIFIKNLHTTIDHKALHDTFSAFGKIL 180
Query: 132 SLVISKDANGT-SKGF---------------------GSKVLYVARAQKKAERKAILRAQ 169
S I+ D + GF + +YV K ER + +
Sbjct: 181 SCKIAMDGERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERSSTI--- 237
Query: 170 FERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
E R + +Y KNI+ VD+ ++ F GT S +M + G SK
Sbjct: 238 -EEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSK 285
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
+QGA F A I G++ +LY+ +L+ +TE +L E F+ G + S+
Sbjct: 36 VQGADASFAHQQQTAFTGAAAPIMTGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIR 95
Query: 135 ISKDA-NGTSKGFGS-KVLYVARAQKKAE--RKAILRAQFERM----------RKERAEL 180
+ +DA S G+G L +A A++ + +R R+ R +
Sbjct: 96 VCRDAVTRRSLGYGYINYLDIADAERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNI 155
Query: 181 Y-KNINDEVDEIELKQYFSQCGTISSVKI-MRTDRGISKG 218
+ KN++ +D L FS G I S KI M +R + G
Sbjct: 156 FIKNLHTTIDHKALHDTFSAFGKILSCKIAMDGERSLGHG 195
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 179/368 (48%), Gaps = 78/368 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV + T E+A AIEK+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 76 QGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + +++VG F R +R E F N+Y+KN +++ + L E FS+FGK
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S+ + +D++G S+GFG K ++V RAQKK ER+A L+
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 169 QFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-- 219
+FE++++ER Y KN++D +D+ +L++ FS G+I+S K+M D G SKG
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGF 238
Query: 220 -C-------------------------MAIAQTKRERTSYLRIMYAKQGPGLASTIFPVH 253
C +A+AQ K ER ++L Y + GL + P
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRA--LPAG 296
Query: 254 PTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPDSVTQYRGAMMNGHAN 308
L +Q A Y P+ +P PP P+ L M P+ Q +G + G
Sbjct: 297 AILNQFQPAAGGYFVPE------VPQAQGRPPYYTPNQLAQMRPNPCWQ-QGGRLQGFQG 349
Query: 309 FPMPLMLS 316
P L S
Sbjct: 350 MPSALRQS 357
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 145/483 (30%), Positives = 209/483 (43%), Gaps = 116/483 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG N F+KNL I LHQ+FS+FG I S KV GKSKGYGFV
Sbjct: 105 MFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFV 164
Query: 61 QYSTPESALDAIEKLQG--ATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMT 116
Q+ + ESA DA+ L G A +LYV FIRR +R I S F N+Y KNL + T
Sbjct: 165 QFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIGGASKFTNVYTKNLPKEFT 224
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L F+ FG ITS V+ KD +G SK FG LYV
Sbjct: 225 DDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALYV 284
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RA++K ER+A L+ +F++ R ++ LY KN++ +D+ L+ F + I +
Sbjct: 285 GRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTC 344
Query: 207 KIMRTDRGISKGH-----------------------------CMAIAQTKRERTSYL--- 234
K+M G SKG + +AQ K ER++ L
Sbjct: 345 KVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVCVAQRKEERSAILAAQ 404
Query: 235 ---RIMYAKQGPGLASTIFP-------------VHPTLYQRALQVYQAPDFRHGGMIPNG 278
R M + P + I P V P Q Y P +IP G
Sbjct: 405 FARRHMVGARTPAMPQNIAPRPFYFGYGVPGVLVRPQATGFGYQQYPQP------VIP-G 457
Query: 279 FSPPPPS---PLFLMAP---------------DSVTQYRGAMMNGHANFPM-PLMLSNLQ 319
+P PS P ++ P + + +Y NG N M P M
Sbjct: 458 LNPGAPSLMMPYHMLRPIHHQPQQQMAQLPNWNQIVRYMPNACNGPTNSAMAPQM----- 512
Query: 320 KPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVK 379
+ P+ P+ + +T + S ++L++ L + P+++ ILG+RL PLV
Sbjct: 513 --DFVAPVV-PQISVLTDSVVTAPSISEEPSIDSLATALASAEPEKQHLILGERLQPLVA 569
Query: 380 KLK 382
+L+
Sbjct: 570 QLE 572
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 39/245 (15%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
+ +V NL +++ +L +FS+ + S ++ + G+S GY +V + + E A A+E
Sbjct: 32 SVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEY 91
Query: 75 -----LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G ++ M P +RR S NL++KNL+ ++ + L + FS FG
Sbjct: 92 FNFTVVNGKSIRVMFSNRDPTLRR-------SGAANLFIKNLEPNIVAKSLHQMFSRFGI 144
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI-----------LRAQFERMRKERA 178
I S ++ D NG SKG+G V +V+ K A+ L R+ER
Sbjct: 145 ILSCKVATDLNGKSKGYGF-VQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQ 203
Query: 179 EL----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKR 228
+ KN+ E + +L + F+ GTI+S +M+ G SK C
Sbjct: 204 HIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESK--CFGF--VNY 259
Query: 229 ERTSY 233
E+T Y
Sbjct: 260 EKTEY 264
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 136 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFV 195
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR + ++F N+YVKN+ + T
Sbjct: 196 HYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 255
Query: 117 EEILVEKFSEFGKITSLVISKDAN-GTSKGFG-----------------------SKVLY 152
+E E F +FG +TS +++D + G S+GFG + LY
Sbjct: 256 DEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLY 315
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L++ F+ G I+S
Sbjct: 316 VGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDEKLRELFTPFGAITS 375
Query: 206 VKIMR 210
K+MR
Sbjct: 376 AKVMR 380
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + ++F KFGD+ S+ + Q+ GKS+G+GFV + E A A+++
Sbjct: 244 NIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDE 303
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L G + +LYVG ++ A RI++ S + NLYVKNLDDD+ +E L
Sbjct: 304 LNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDEKL 363
Query: 121 VEKFSEFGKITSLVISKDA 139
E F+ FG ITS + +D+
Sbjct: 364 RELFTPFGAITSAKVMRDS 382
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 46/234 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 65 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTTDGEKALEE 122
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 123 LNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNKALHDTFAAFGN 175
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K ++V K +R
Sbjct: 176 ILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR---- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
+++FE M+ +Y KNI E + E ++ F + G ++S + R D G S+G
Sbjct: 232 QSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRG 285
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 142/252 (56%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ G SKG
Sbjct: 324 KVM-TEGGHSKG 334
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 95/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L ++FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 170/338 (50%), Gaps = 53/338 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV + +EG SKGYGFV
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFV 165
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F RA R +E F N+YVKN +
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGEHYN 225
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------SKV------L 151
++ L + F+++G ITS + + G SKGFG S V L
Sbjct: 226 KDTLEKLFAKYGTITSCDVMT-SEGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKL 284
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ LK+ F G I+
Sbjct: 285 HVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNIT 344
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR----- 259
S K+M + G SKG + E T+ + M +K + S P++ L QR
Sbjct: 345 SAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKM---VCSK--PLYVALAQRKEDRR 399
Query: 260 ---ALQVYQ-APDFRHGGMIPNG--FSPPPPSPLFLMA 291
A Q Q R +P G +SP P P + +A
Sbjct: 400 AQLASQYMQRLASMRMHTNVPGGGMYSPAQPGPGYYVA 437
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 100 GSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQ 157
GSS+ +LYV +L D+ E IL EKFS G + S+ + +D N T G YV Q
Sbjct: 26 GSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRD-NATRLSLG--YAYVNFQQ 82
Query: 158 KKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQ 199
+A+ FE MR+ A KN++ +D + FS
Sbjct: 83 PADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSL 142
Query: 200 CGTISSVKIMRTDRGISKGH 219
G I S K+ + G SKG+
Sbjct: 143 FGNILSCKVAIDEEGSSKGY 162
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNLD +T
Sbjct: 189 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
E E F ++G ITS I+ D+ G S+GFG + LY
Sbjct: 249 NEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 309 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITS 368
Query: 206 VKIMR 210
++MR
Sbjct: 369 ARVMR 373
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + + N + ++F K+GDI S+ + S+ GKS+G+GFV + ESA A+E+
Sbjct: 237 NVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEE 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 297 LNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
+ F FG ITS + +D
Sbjct: 357 RDLFIGFGNITSARVMRD 374
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 215/486 (44%), Gaps = 107/486 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M + G SKG C +A+AQ K ER +YL
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 235 -------RIMYAKQGP--GLASTIFPV---HPTLY--QRALQVYQAPDFRHGGMIPNGFS 280
R + ++ P G T P H Y + ++ +P + G P+ F
Sbjct: 383 MQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQ 442
Query: 281 PPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P + P M P S ++ R A + P P +
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRT 502
Query: 321 -PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLY 375
P Y Y + P+ + A +T + +S L + P ++K +LG+RL+
Sbjct: 503 VPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLF 562
Query: 376 PLVKKL 381
PL++ +
Sbjct: 563 PLIQAM 568
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 215/486 (44%), Gaps = 107/486 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M + G SKG C +A+AQ K ER +YL
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 235 -------RIMYAKQGP--GLASTIFPV---HPTLY--QRALQVYQAPDFRHGGMIPNGFS 280
R + ++ P G T P H Y + ++ +P + G P+ F
Sbjct: 383 MQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQ 442
Query: 281 PPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P + P M P S ++ R A + P P +
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRT 502
Query: 321 -PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLY 375
P Y Y + P+ + A +T + +S L + P ++K +LG+RL+
Sbjct: 503 VPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLF 562
Query: 376 PLVKKL 381
PL++ +
Sbjct: 563 PLIQAM 568
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 150/300 (50%), Gaps = 64/300 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L + FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 150/300 (50%), Gaps = 64/300 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G+GN FVKNL +I+N L+ S FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L + FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+Y+KN+ D+T
Sbjct: 189 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVT 248
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ F G +TS I++D +G S+GFG + LYV
Sbjct: 249 DDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYV 308
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN++D+VD+ +L+ F++ G I+S
Sbjct: 309 GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSA 368
Query: 207 KIMR 210
K+MR
Sbjct: 369 KVMR 372
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+A + + + +F GD+ SS + +GKS+G+GFV ++T E+A A+E+L
Sbjct: 237 NVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEEL 296
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
ELYVG ++ A RI++ S + NLY+KNLDDD+ +E L
Sbjct: 297 NNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLR 356
Query: 122 EKFSEFGKITSLVISKDA 139
F+EFG ITS + +D+
Sbjct: 357 TMFTEFGPITSAKVMRDS 374
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 42/246 (17%)
Query: 4 TPNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQ 61
TPNS A + +V L ++ L ++FS+ G + S +V +S GY +V
Sbjct: 43 TPNSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVN 102
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
Y++ A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 103 YNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAID 155
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + F+ FG I S +++D G+SKG+G K +YV
Sbjct: 156 NKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 215
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
K +R++ +FE M+ +Y KNI +V + + + F G ++S I R
Sbjct: 216 GHHIPKKDRQS----KFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDP 271
Query: 213 RGISKG 218
G S+G
Sbjct: 272 DGKSRG 277
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS+ G + S+ + +DA N S G K L +
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 176
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 177 DETGSSKGY 185
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 58/365 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR--ALQVY 264
K+M + G SKG + E T + M G P++ L QR Q Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAY 377
Query: 265 QAPDF--RHGGM--IPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
++ R + +PN + PPS F+ A VTQ HA + P ++ L +
Sbjct: 378 LTNEYMQRMASVRAVPNQRA--PPSGYFMTA---VTQ-----TQNHAAYYPPSQIARL-R 426
Query: 321 PSYNY 325
PS +
Sbjct: 427 PSPRW 431
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ E F +FG +TS +++D G S+GFG + LYV
Sbjct: 253 EDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y+ +N + + +L+Q FS+ G I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+A + ++F KFGD+ SS + QEGKS+G+GFV ++T ESA A++ L
Sbjct: 241 NVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNLDDD+ ++ L
Sbjct: 301 NGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLR 360
Query: 122 EKFSEFGKITSLVISKD 138
+ FSEFG ITS + ++
Sbjct: 361 QMFSEFGPITSAKVMRE 377
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTR--RSLGYAYVNYNATADGEKALEE 119
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 120 LNYTLIKGRPCRIMWSQRDPALRKNGQ-------GNVFIKNLDVAIDNKALHDTFAAFGN 172
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D NG SKG+G K +YV K +R++
Sbjct: 173 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 230
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI +V E + ++ F + G ++S + R G S+G
Sbjct: 231 --KFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRG 281
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQK----- 158
+LYV LD +TE +L E FS+ G + S+ + +DA T + G + V Y A A
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAV-TRRSLGYAYVNYNATADGEKALE 118
Query: 159 -------KAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKI 208
K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 119 ELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLR 235
+ + G SKG+ +T + ++
Sbjct: 179 AQDENGNSKGYGFVHYETDEAASQAIK 205
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 145/490 (29%), Positives = 207/490 (42%), Gaps = 111/490 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G N FVKNL TIDN L+ FS FG+I S KV +GKS+GYGFV
Sbjct: 108 MWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFV 167
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ ESA AI KL G + +YVGPF + A+R + E F N+Y+K+L + T
Sbjct: 168 HFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWT 227
Query: 117 EEILVEK-FSEFGKITSLVISKDANGTSKGF-----------------GSKV-------- 150
E V+K F EFGKITS+ I D G F G +
Sbjct: 228 TEEDVQKAFEEFGKITSVAIQTDRKGRRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDA 287
Query: 151 -------------------LYVARAQKKAERKAILRAQF-----ERMRKERAELY-KNIN 185
LYV RAQ K ER A LR +F E++ + LY KN+
Sbjct: 288 GKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTEKVGNQSCNLYVKNLP 347
Query: 186 DEVDEIELKQYFSQCGTISSVKIM-RTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QG 242
++VD+ +L+Q F Q G I+S K+M + G+S+G + + ++ M+ K G
Sbjct: 348 EDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGG 407
Query: 243 PGLASTIFPVHPTLYQRALQVYQAPDFRHGGMI--------PNGFSPPPPSPLFLMAPDS 294
L + +R Q Y+A GG P F+ P PSP++ +
Sbjct: 408 KPLFVAVAEKRDARIERLQQRYRA-GIPMGGFQQNYQGYRGPRNFNAPNPSPMYYSGGQN 466
Query: 295 --------------------VTQYRGAMMNGHANFPM--------PLMLSNLQKPSYNYP 326
+ RG MM+G +P+ P M+ Q P N+P
Sbjct: 467 RQGGMMQGPPGGFVGGPRGPMGAQRGPMMSG--GYPVNRGPRPTGPNMMPMNQPPRGNFP 524
Query: 327 ISQPRAGQAAA----------NNLTNGNHRAAASNENLSSM----LVATSPDERKDILGQ 372
Q GQ + H ++N M L + P +K +LG+
Sbjct: 525 PQQRFPGQQGGPFMGQQGGMPPRMMPEQHNMPMPHQNPPPMTAAALASAPPGLQKQMLGE 584
Query: 373 RLYPLVKKLK 382
RL+ L+ K +
Sbjct: 585 RLFTLISKYQ 594
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 41/226 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L+++F+ G + S +V S +S GY +V + + E ALD +
Sbjct: 37 YVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTLN 96
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+A N++VKNLD + + L + FS FG I
Sbjct: 97 YSPIRGKQCRIMWSHRDPTLRKAGNA-------NVFVKNLDKTIDNKALYDTFSLFGNIL 149
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D +G S+G+ G K +YV QK AER
Sbjct: 150 SCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERA---EQ 206
Query: 169 QFERMRKERAELYKNINDE-VDEIELKQYFSQCGTISSVKIMRTDR 213
+ RK K++ + E ++++ F + G I+SV I +TDR
Sbjct: 207 HGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAI-QTDR 251
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------SKVLYVARA 156
F +LYV +L D+TE +L E F+ G + S+ + +D+ T + G V RA
Sbjct: 33 FASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSV-TRRSLGYAYVNFHNVADAERA 91
Query: 157 QKKAERKAILRAQFERMRKER---------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
I Q M R A ++ KN++ +D L FS G I S
Sbjct: 92 LDTLNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSC 151
Query: 207 KIMRTDRGISKGH 219
K+ D G S+G+
Sbjct: 152 KVATDDDGKSRGY 164
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 143/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH FS FG+I S K+ + GKSKG+GFV
Sbjct: 125 MWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A +AI+ + G + +E+YV + R DR + ++F N+YVKN+D + T
Sbjct: 185 HFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEAT 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F +FG ITS+ + KD+ G +GFG S+ LYV
Sbjct: 245 EEEFEELFKKFGPITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E + E+ Y KN++D +D+ LK+ F GTI+SV
Sbjct: 305 GRAQKKYERLQELKKQYEEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSV 364
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR + G SKG + E T
Sbjct: 365 KVMRNETGKSKGFGFVCFSSPEEAT 389
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 37/207 (17%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
EA + N +VKN+ + ++F KFG I S + EGK +G+GFV Y ES
Sbjct: 225 EAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFGFVNYENHES 284
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDD 113
A A+++L + +LYVG ++ +R+QE + + NL+VKNLDD
Sbjct: 285 AAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKYQGVNLFVKNLDD 344
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKV 150
+ +E+L ++F FG ITS+ + ++ G SKGFG K
Sbjct: 345 TIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKP 404
Query: 151 LYVARAQKKAERKAILRAQFERMRKER 177
LYVA AQ+K R++ L Q + + R
Sbjct: 405 LYVALAQRKDVRRSQLAQQIQARNQMR 431
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ L+ IFS G + S +V K S GY +V ++ +S AIEKL
Sbjct: 54 YVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEKLN 113
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + R + GS N+++KNL D+ + L + FS FG I S I+
Sbjct: 114 YTPIKGKPCRIMWSQRDPSMRKNGSG--NIFIKNLHADIDNKALHDTFSVFGNILSCKIA 171
Query: 137 KDANGTSKGFG 147
D G SKGFG
Sbjct: 172 TDETGKSKGFG 182
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERK 163
+LYV LD ++E +L + FS G ++S+ + +DA TS G+ YV + +
Sbjct: 52 SLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYA----YVNFNDHDSGKV 107
Query: 164 AILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISS 205
AI + + MRK + KN++ ++D L FS G I S
Sbjct: 108 AIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGNILS 167
Query: 206 VKIMRTDRGISKG 218
KI + G SKG
Sbjct: 168 CKIATDETGKSKG 180
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 147/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M T+ G SKG + E T + M
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 215/486 (44%), Gaps = 107/486 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M + G SKG C +A+AQ K ER +YL
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 235 -------RIMYAKQGP--GLASTIFPV---HPTLY--QRALQVYQAPDFRHGGMIPNGFS 280
R + ++ P G T P H Y + ++ +P + G P+ F
Sbjct: 383 MQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQ 442
Query: 281 PPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P + P M P S ++ R A + P P +
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRT 502
Query: 321 -PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLY 375
P Y Y + P+ + A +T + +S L + P ++K +LG+RL+
Sbjct: 503 VPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLF 562
Query: 376 PLVKKL 381
PL++ +
Sbjct: 563 PLIQAM 568
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 149/271 (54%), Gaps = 38/271 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G S GYGFV
Sbjct: 121 MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E ++F N+Y KN+D D+T
Sbjct: 180 HYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRANFTNVYAKNVDPDVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F+ +GKITS V+ +D +G SKGFG + L+V
Sbjct: 240 DEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLFV 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E + E+ LY KNI + D+ L++ F+ G I+S
Sbjct: 300 ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSC 359
Query: 207 KIMRTDRGISKGH---CMAIAQTKRERTSYL 234
KIMR G+S+G C ++ + + S +
Sbjct: 360 KIMRAPSGVSRGFGFVCYSVPEEANKAVSEM 390
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N ++KN+ + D+ +L + F+ FG I S K++ + G S+G+GFV YS PE A
Sbjct: 325 AKFQGV-NLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEA 383
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G ++ LYV R+ DR Q+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRKDDRRQQ 414
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 135/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNL+ ++T
Sbjct: 188 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVT 247
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
E E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 248 NEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLY 307
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 308 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITS 367
Query: 206 VKIMR 210
++MR
Sbjct: 368 ARVMR 372
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + N + ++F K+G+I S+ + E GKS+G+GFV + +SA A+E
Sbjct: 236 NVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVED 295
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 LNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 355
Query: 121 VEKFSEFGKITSLVISKD 138
+ F FG ITS + +D
Sbjct: 356 RDLFIGFGNITSARVMRD 373
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + SKGYGFV
Sbjct: 127 MWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYGFV 186
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR+ + ++F N+YVKN+D + T
Sbjct: 187 HYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETT 246
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
+ E F ++G ITS ++ D +G ++GFG + LY
Sbjct: 247 DNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLY 306
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R+E++ Y KN+ DE+D+ EL++ F G I+S
Sbjct: 307 VGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITS 366
Query: 206 VKIMR 210
K+MR
Sbjct: 367 AKVMR 371
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ S + + ++F K+GDI S+ + E GK++G+GFV Y E A A+E+
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L + + +LYVG ++ +R +E + + NLYVKNL D++ ++ L
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 121 VEKFSEFGKITSLVISKD 138
+ F +G ITS + +D
Sbjct: 355 RKVFEPYGAITSAKVMRD 372
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS G++ S+ + +DA N G G + L +
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K I+ +Q + + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 211 TDRGISKGH 219
+ SKG+
Sbjct: 175 DENANSKGY 183
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 35/249 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNL+ ++T
Sbjct: 188 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVT 247
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
E E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 248 NEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLY 307
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 308 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITS 367
Query: 206 VKIMRTDRG 214
++MR G
Sbjct: 368 ARVMRDTIG 376
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + N + ++F K+G+I S+ + E GKS+G+GFV + +SA A+E
Sbjct: 236 NVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVED 295
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 LNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 355
Query: 121 VEKFSEFGKITSLVISKDANGTS 143
+ F FG ITS + +D G +
Sbjct: 356 RDLFIGFGNITSARVMRDTIGDA 378
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 217/481 (45%), Gaps = 106/481 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 SRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M T+ SKG C +A+AQ K ER + L Y
Sbjct: 324 KVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRA---LQVYQAPDFRHGGMIPNGFSPPPPSPLFLMA---P 292
++ + + P+ + Q + L P + +P P+P + P
Sbjct: 383 MQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRP 442
Query: 293 DSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPR-----------AGQAAANNLT 341
+ R +M P P +S++++ S P + P G + T
Sbjct: 443 SCASMVRPPVM---PRCP-PAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCT 498
Query: 342 NGN-------HRAAASNENL--------------SSMLVATSPDERKDILGQRLYPLVKK 380
G AA S + + +SML A E+K ++G+RLYPL+
Sbjct: 499 PGRPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTASMLAAAPLHEQKQMIGERLYPLIHD 558
Query: 381 L 381
+
Sbjct: 559 V 559
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K+ D+ S+G
Sbjct: 124 NILSCKVA-CDKHGSRG 139
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 145/265 (54%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG + E T
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 147/271 (54%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M T+ G SKG + E T + M
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 139/274 (50%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG++ S KV + G S+GYGFV
Sbjct: 112 MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR----IQEGSSFNNLYVKNLDDDMT 116
Y ESA AI+ + G + ++YVG + + +R ++ S F N+++KNLD +
Sbjct: 172 HYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVD 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + +G+I S V+ KD G S+GFG K ++
Sbjct: 232 DEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFA 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK ER+ LR +E+ + E+ Y KN++D+ D+ L F GTI+S
Sbjct: 292 ARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
KIMR ++G SKG + E T + + K
Sbjct: 352 KIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGK 385
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KNL ++D+ K QI +G+I S+ V ++G S+G+GFV Y E A A+E L
Sbjct: 220 NVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESL 279
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
V+ +++ ++ +R +E + NLYVKNLDDD +E LV
Sbjct: 280 NEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLV 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
+F FG ITS I +D GTSKGF GSK LYV+ AQ+
Sbjct: 340 GEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQR 399
Query: 159 KAERKAILRAQFERMRKER 177
+ R+ L +Q + + R
Sbjct: 400 RDVRRQQLESQIAQRNQLR 418
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ +G+ N +VKNL D+ +L F FG I S+K++ ++G SKG+GFV +S+P+ A
Sbjct: 317 AKYAGV-NLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ +L G + LYV RR R Q+
Sbjct: 376 TKAVSELSGKMIGSKPLYVSLAQRRDVRRQQ 406
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV LD +TE +L E F+ G + S+ + +DA T + G YV + +A
Sbjct: 39 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAV-TRRSLG--YAYVNYLNLQDGERA 95
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ + + ++ + KN+++ +D L F+ G + S
Sbjct: 96 LEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSC 155
Query: 207 KIMRTDRGISKGH 219
K+ + G S+G+
Sbjct: 156 KVATDENGNSRGY 168
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ G SKG
Sbjct: 324 KVM-TEGGHSKG 334
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 153/303 (50%), Gaps = 64/303 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER +YL Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 239 AKQ 241
++
Sbjct: 383 MQR 385
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 165/392 (42%), Gaps = 27/392 (6%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E +F NLYVKNLDD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174
+ +E L + FS FG ITS + + G SKGFG +V + + KA+ +
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG----FVCFSSPEEATKAVTEMNGRIVA 359
Query: 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCM-AIAQTKRERTSY 233
+ LY + +E + ++SV+ + R G+ M A+ QT+ Y
Sbjct: 360 TK--PLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Query: 234 LRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ--APDFRHGGMIPNGFSPPPPSPLFLMA 291
A+ P T P +Q + AP M P P +A
Sbjct: 418 PPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVA 477
Query: 292 PDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASN 351
++ TQ G + + + Y + P+ + A +T
Sbjct: 478 -NTSTQTVGPRPAAARAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQG 536
Query: 352 ENL--SSMLVATSPDERKDILGQRLYPLVKKL 381
+ +S L + P ++K +LG+RL+PL++ +
Sbjct: 537 QETLTASRLASAPPQKQKQMLGERLFPLIQAM 568
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ G SKG
Sbjct: 324 KVM-TEGGHSKG 334
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 149/271 (54%), Gaps = 38/271 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G S GYGFV
Sbjct: 119 MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E + F N+Y KN+D ++T
Sbjct: 178 HYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAKFTNVYCKNVDPEVT 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F+ +GKITS V+ +D +G SKGFG + L+V
Sbjct: 238 DEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFV 297
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E + E+ LY KNI + D+ L++ F+ GTI+S
Sbjct: 298 ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGTITSC 357
Query: 207 KIMRTDRGISKGH---CMAIAQTKRERTSYL 234
KIMR G+S+G C ++ + + S +
Sbjct: 358 KIMRAPSGVSRGFGFVCYSVPEEANKAVSEM 388
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N + KN+ + + + ++F+ +G I S + +GKSKG+GFV + E A A+++L
Sbjct: 226 NVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDEL 285
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ +L+V ++++R +E S+ NLY+KN+ + +E L
Sbjct: 286 HDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 345
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS I + +G S+GFG ++ LYVA AQ+
Sbjct: 346 EEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQR 405
Query: 159 KAERKAILRAQF 170
K R+ L AQ
Sbjct: 406 KDVRRQQLEAQI 417
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N ++KN+ + D+ +L + F+ FG I S K++ + G S+G+GFV YS PE A
Sbjct: 323 AKFQGV-NLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEA 381
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G ++ LYV R+ R Q+
Sbjct: 382 NKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 412
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 35/249 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKNL+ ++T
Sbjct: 188 HYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVT 247
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
E E F ++G+ITS +S+D G S+GFG + LY
Sbjct: 248 NEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLY 307
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q E R E+A Y KN+ D++D+ +L+ F G I+S
Sbjct: 308 VGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITS 367
Query: 206 VKIMRTDRG 214
++MR G
Sbjct: 368 ARVMRDTIG 376
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKNL + N + ++F K+G+I S+ + E GKS+G+GFV + +SA A+E
Sbjct: 236 NVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVED 295
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 LNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKL 355
Query: 121 VEKFSEFGKITSLVISKDANGTS 143
+ F FG ITS + +D G +
Sbjct: 356 RDLFIGFGNITSARVMRDTIGDA 378
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 157/297 (52%), Gaps = 44/297 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGF 59
MWS + R SG+GN FVKNL ++IDN L+ FS FG+I S KV + G SKGYG+
Sbjct: 119 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGY 178
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A +AI K+ G + E++VG F +R DR + + N YVKN+ T+
Sbjct: 179 VHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDR-PDADDWTNCYVKNIPTQWTDAD 237
Query: 120 LVEKFSEFGKITSLVISKD-AN-GTSKGFG----------------------------SK 149
L+++F FGK+ S V+ KD AN ++GFG
Sbjct: 238 LLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDT 297
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGT 202
+YV +AQK++ER+ LR +FE+++ ER Y KN++D++ + EL++ F++CGT
Sbjct: 298 EMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGT 357
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
I+S ++MR G S+G T E + M K G PV+ L QR
Sbjct: 358 ITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGK-----PVYVALAQR 409
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 44/203 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV--SQEGKSKGYGFVQYSTPESALDAIE 73
N +VKN+ + + L + F FG + S+ V+ + ++G+GFV Y ++A A++
Sbjct: 223 NCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVD 282
Query: 74 KLQGATVE-----RMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
L G + E+YVG +R++R +E + F NLYVKNLDD
Sbjct: 283 ALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQ 342
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
++++ L E F+E G ITS + +D NG S+GFG K +
Sbjct: 343 LSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPV 402
Query: 152 YVARAQKKAERKAILRAQFERMR 174
YVA AQ+K R+A L AQ + R
Sbjct: 403 YVALAQRKEVRRAQLEAQHAQQR 425
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 199/436 (45%), Gaps = 107/436 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +ID+ L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E A AIEK+ G + +++VG F R DR E F N+Y+KNL +DM
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAEL-----------------YKNINDEVDEIELKQY 196
RAQKK ER+ L+ +F +M++++ ++ KN++D +D+ L++
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKE 323
Query: 197 FSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIAQTKR 228
FS GTI+S K+ + G SKG C +A+AQ K
Sbjct: 324 FSPFGTITSAKVT-MEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKE 382
Query: 229 ERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGF---SPPPPS 285
ER ++L Y ++ +AST +P + Q Q P+G+ + P S
Sbjct: 383 ERQAHLSNQYMQR---MASTSAGPNPVV--SPFQPAQG---------PSGYCMTATPTQS 428
Query: 286 PLFLMAPDSVTQYRGAMMNGHAN----FPMPLMLSNLQKPSYNYP---ISQPRAGQAAAN 338
AP+ TQ +G G A+ P M S + PS+ P S P QA
Sbjct: 429 RRAYCAPNQTTQ-QGPSARGSAHGTRAHPFQNMCSTIH-PSHTMPSFSTSGPTTSQAI-- 484
Query: 339 NLTNGNHRAAASNENL 354
HR A+++ +
Sbjct: 485 -----RHRTASTSTQM 495
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
S +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q +
Sbjct: 9 SLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYAS----VNFQQLED 64
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
+A+ F+ ++ + + KN++ +D L FS G
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGN 124
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRE 229
I S K++ + G SKG+ +T+ E
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEE 150
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 146/284 (51%), Gaps = 46/284 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +ID+ L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E A AIEK+ G + +++VG F R DR E F N+Y+KNL +DM
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAEL-----------------YKNINDEVDEIELKQY 196
RAQKK ER+ L+ +F +M++++ ++ KN++D +D+ L++
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKE 323
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
FS GTI+S K+ + G SKG + E T + M +
Sbjct: 324 FSPFGTITSAKVT-MEGGRSKGFGFVCFSSPEEATKAVTEMNGR 366
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 49/225 (21%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KNL +D+ +L +FS+FG S KV+ + GKSKG+GFV + E A
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN----------------------- 104
A++++ G + ++YVG ++ +R E F
Sbjct: 245 RKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGV 304
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----------------- 147
NLYVKNLDD + +E L ++FS FG ITS ++ + G SKGFG
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 148 ------SKVLYVARAQKKAERKAILRAQF-ERMRKERAELYKNIN 185
+K LYVA AQ+K ER+A L Q+ +RM A IN
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGIN 408
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
S +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q +
Sbjct: 9 SLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYAS----VNFQQLED 64
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
+A+ F+ ++ + + KN++ +D L FS G
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGN 124
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRE 229
I S K++ + G SKG+ +T+ E
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEE 150
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 206/443 (46%), Gaps = 97/443 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +ID+ L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E A AIEK+ G + +++VG F R DR E F N+Y+KNL +DM
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L FS+FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKER----------------AELY-KNINDEVDEIELKQY 196
RAQKK ER+ L+ +F +M++++ LY KN++D +D+ L++
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKE 323
Query: 197 FSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIAQTKR 228
FS GTI+S K+ + G SKG C +A+AQ K
Sbjct: 324 FSPFGTITSAKVT-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 382
Query: 229 ERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLF 288
ER ++L Y ++ +AST P + Q QAP G S +
Sbjct: 383 ERQAHLSNQYMQR---MASTSAVSSPVI--NPFQPAQAPS----GYFMTTTSQTQNCGAY 433
Query: 289 LMAPDSVTQ----YRGAMMNGHANFPMPLMLSNLQKPSY-NYPISQPRAGQAAANNLTNG 343
AP+ TQ +RG+ A+ P M S +Q + ++ S P + QA + T
Sbjct: 434 Y-APNQTTQQGPGHRGSAQGARAH-PFQNMSSAIQPATIPSFSTSGPASSQALRSMST-- 489
Query: 344 NHRAAASNENLSSMLVATSPDER 366
HRA ++ S+ ++ + P R
Sbjct: 490 -HRAGSA----STQMMGSHPTAR 507
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
S +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q +
Sbjct: 9 SLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYAS----VNFQQLED 64
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
+A+ F+ ++ + + KN++ +D L FS G
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGN 124
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRE 229
I S K++ + G SKG+ +T+ E
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEE 150
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 144/252 (57%), Gaps = 35/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV ++ G S GYGFV
Sbjct: 121 MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E ++F N+Y KN+D ++T
Sbjct: 180 HYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F++FGKITS V+ +D +G SKGFG + L+V
Sbjct: 240 DDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E + E+ LY KNI + D+ L++ F+ G I+S
Sbjct: 300 ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSC 359
Query: 207 KIMRTDRGISKG 218
KIMR G+S+G
Sbjct: 360 KIMRAPSGVSRG 371
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N + KN+ + + + ++F+KFG I S + ++GKSKG+GFV + A A+++L
Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDEL 287
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ + +L+V ++++R +E S+ NLY+KN+ + +E L
Sbjct: 288 HDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS I + +G S+GFG ++ LYVA AQ+
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 159 KAERKAILRAQF 170
K R+ L AQ
Sbjct: 408 KDVRRQQLEAQI 419
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 56/259 (21%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLH--------------QIFSKFGDIQSSKVVVS 49
TP A +GN +N A +N L+ +IFS G + S +V
Sbjct: 22 TPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRD 81
Query: 50 Q-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV-----GPFIRRADRIQEGSSF 103
+S GY +V + A+E+L + + + P +RR +
Sbjct: 82 AVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQ------- 134
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------- 147
N+++KNLD + + L + F+ FG I S ++ + G S G+G
Sbjct: 135 GNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKH 193
Query: 148 -------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQ 199
K +YV + ER+ A+ E R +Y KN++ EV + E ++ F++
Sbjct: 194 VNGMLLNDKKVYVGHHIPRKERQ----AKIEETRANFTNVYAKNVDPEVTDDEFEKLFTK 249
Query: 200 CGTISSVKIMRTDRGISKG 218
G I+S + R + G SKG
Sbjct: 250 FGKITSCVLQRDEDGKSKG 268
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N ++KN+ + D+ +L + F+ FG I S K++ + G S+G+GFV YS PE A
Sbjct: 325 AKFQGV-NLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEA 383
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G ++ LYV R+ R Q+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 414
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 175/389 (44%), Gaps = 70/389 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R+SG GN FVKNL +IDN +L +FS FG + S KV G SKGYGFV
Sbjct: 17 MFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFV 76
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ + S A G + ++V PF+ R + + F N+YVKNL + T+ L
Sbjct: 77 QFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRG-QWDKSRVFTNVYVKNLVETATDADL 135
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
F EFG+ITS V+ KD G S+ FG K L+V RAQ
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 158 KKAERKAILRAQFE--------RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+K R L+A+FE + RK KN++D VD +L++ FS+ GTI+S K+M
Sbjct: 196 RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
Query: 210 RTDRGISKGH----------------------------CMAIAQTKRERTSYLRIMY--- 238
GISKG +++AQ K + +L+ +
Sbjct: 256 VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNP 315
Query: 239 ---AKQGPGLASTIFPVHPTLYQRALQVYQ-APDFRHGGMIPNGFSPPPPSPLFLMA-PD 293
Q P + + P Q L+ Y P G +PN PP P F++ P
Sbjct: 316 PPSPHQQPIFSQVVAPATMLSQQTPLRGYNFQPYSMCGSRMPNS-CPPISIPNFMVPQPF 374
Query: 294 SVTQYRGAMMNG-HANFPMPLMLSNLQKP 321
T Y A + G + + P PL+ NL P
Sbjct: 375 RPTLYPPAPLVGLYGSLPQPLLQPNLWNP 403
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 36/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN L+ FS FG+I S KVV G SKG+GFV
Sbjct: 76 MWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y + ESA AIEK+ G +E +++V F R DR++E F NL+VKNL D
Sbjct: 135 HYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWD 194
Query: 117 EEILVEKFSEFGKITS-LVISKDANGTSKGFG-----------------------SKVLY 152
+ L++ F +FG++ S VI + G SK G K LY
Sbjct: 195 TDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLY 254
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
RAQKKAER + L+A++E++++ER + Y KN++D +D+ L++ F Q G I+S
Sbjct: 255 CGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITS 314
Query: 206 VKIM 209
K++
Sbjct: 315 AKVI 318
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N FVKNL + D L + F +FG++ S KV+ + G SK +GF+ + + A A+E
Sbjct: 183 NLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEI 242
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEIL 120
+ +E +LY G ++A+R E + NLYVKNLDD + +E L
Sbjct: 243 MHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGL 302
Query: 121 VEKFSEFGKITSLVISKDAN 140
E F +FG ITS + D N
Sbjct: 303 REAFKQFGNITSAKVITDLN 322
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 46/132 (34%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---------------------- 47
R G+ N +VKNL +ID+ L + F +FG+I S+KV+
Sbjct: 282 RYQGV-NLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEG 340
Query: 48 -----------------------VSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84
VS++G+SKG+GFV +S+PE A A+ ++ G
Sbjct: 341 EAVEEKKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKP 400
Query: 85 LYVGPFIRRADR 96
LYVG R+ DR
Sbjct: 401 LYVGLAQRKEDR 412
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 145/265 (54%), Gaps = 36/265 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG + E T
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEAT 347
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 145/284 (51%), Gaps = 46/284 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +ID+ L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E A AIEK+ G + +++VG F R DR E F N+Y+KNL +DM
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAEL-----------------YKNINDEVDEIELKQY 196
RAQKK ER+ L+ +F +M++++ ++ KN++D +D+ L++
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKE 323
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
FS GTI+S K+ + G SKG + E T + M K
Sbjct: 324 FSPFGTITSAKVT-MEGGRSKGFGFVCFSSPEEATKAVTEMNGK 366
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ +L + FS FG I S+KV + + G+SKG+GFV +S+PE A
Sbjct: 300 RCKGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEAT 357
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL 111
A+ ++ G V LYV R+ +R + +N Y++ +
Sbjct: 358 KAVTEMNGKIVATKPLYVALAQRKEER---QAHLSNQYMQRM 396
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKA 160
S +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q +
Sbjct: 9 SLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYAS----VNFQQLED 64
Query: 161 ERKAILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGT 202
+A+ F+ ++ + + KN++ +D L FS G
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGN 124
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRE 229
I S K++ + G SKG+ +T+ E
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEE 150
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 157/297 (52%), Gaps = 44/297 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGF 59
MWS + R SG+GN FVKNL ++IDN L+ FS FG+I S KV + G SKGYG+
Sbjct: 65 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGY 124
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A +AI K+ G + E++VG F +R DR + + N YVKN+ T+
Sbjct: 125 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR-PDADDWTNCYVKNIPTQWTDAD 183
Query: 120 LVEKFSEFGKITSLVISKD-AN-GTSKGFG----------------------------SK 149
L+++F FGK+ S V+ KD AN ++GFG
Sbjct: 184 LLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDT 243
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGT 202
+YV +AQK++ER+ LR +FE+++ ER Y KN++D++ + EL++ F++CGT
Sbjct: 244 EMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGT 303
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
I+S ++MR G S+G T E + M K G PV+ L QR
Sbjct: 304 ITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGK-----PVYVALAQR 355
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 44/203 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV--SQEGKSKGYGFVQYSTPESALDAIE 73
N +VKN+ + + L + F FG + S+ V+ + ++G+GFV Y ++A A++
Sbjct: 169 NCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVD 228
Query: 74 KLQGATVE-----RMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
L G + E+YVG +R++R +E + F NLYVKNLDD
Sbjct: 229 ALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQ 288
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
++++ L E F+E G ITS + +D NG S+GFG K +
Sbjct: 289 LSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPV 348
Query: 152 YVARAQKKAERKAILRAQFERMR 174
YVA AQ+K R+A L AQ + R
Sbjct: 349 YVALAQRKEVRRAQLEAQHAQQR 371
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 149/280 (53%), Gaps = 41/280 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGF 59
MWS + R SG+GN FVKNL IDN +L+ FS FG+I S KVV +EG S GYG+
Sbjct: 113 MWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGY 172
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A AIEKL G ++ E+ VG F+RR DR + S+ N Y+KN+ + +
Sbjct: 173 VHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDR-PDIDSWTNCYIKNVPYEWDDAR 231
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-------------------------------S 148
L ++F++FG++ S +S++ + GFG +
Sbjct: 232 LNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEIT 291
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCG 201
+ +YV RAQKK+ER+ LRA+FE + +R LY KN++D V + L+ F+ G
Sbjct: 292 QQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMG 351
Query: 202 TISSVKIMRTDR-GISKGHCMAIAQTKRERTSYLRIMYAK 240
TI+S ++M+ + G S+G T E T + M K
Sbjct: 352 TITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGK 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 46/210 (21%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
N + N ++KN+ D+ +L+Q F++FG++ S+ V ++ G+GF+ ++
Sbjct: 207 NDRPDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEH 266
Query: 66 ESALDAIEKLQG----ATVERME----LYVGPFIRRADRIQEG------------SSFN- 104
ESA+ A+E L G T++ E +YVG ++++R +E S F
Sbjct: 267 ESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQG 326
Query: 105 -NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFG--------------- 147
NLYVKNLDD +T+++L ++F+ G ITS + KDA +G S+GFG
Sbjct: 327 VNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVN 386
Query: 148 --------SKVLYVARAQKKAERKAILRAQ 169
+K ++VA AQ++ R+A L AQ
Sbjct: 387 EMNGKLIANKPIFVALAQRREVRRAQLEAQ 416
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 24/135 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+ E +L E FS G + S+ + +DA T + G YV Q +A
Sbjct: 40 SLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAV-TRRSLGYS--YVNFHQMADAERA 96
Query: 165 ILRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSV 206
+ F ++ + + KN+N+ +D +L FS G I S
Sbjct: 97 MDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNILSC 156
Query: 207 KIMRTDR--GISKGH 219
K++ TDR G+S G+
Sbjct: 157 KVV-TDREGGVSMGY 170
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 155/293 (52%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G+GN FVKNL +IDN L+ FS FG I S K V+S E SKGYGFV
Sbjct: 119 MWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCK-VISDENGSKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ESA AIEK+ G + ++++VG F R +R E + N+Y+KN ++M
Sbjct: 178 HFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKDYTNIYIKNFGENMD 237
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E F+++G S+ + D G SKGFG K +YV
Sbjct: 238 DQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYV 297
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE++++ + LY KN++D +++ L++ FS GTI+S
Sbjct: 298 GRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSA 357
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M + G SKG + ++ R M K +AS P++ +L QR
Sbjct: 358 KVM-MENGRSKGFGFVCFSSSKDAAKASREMNGKL---VASK--PLYVSLAQR 404
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 38/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ +L +IF+K+G S KV+ G+SKG+GFV + + E A A++ +
Sbjct: 226 NIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDM 285
Query: 76 QGATVERMELYVG----------PFIRRADRIQEGSSFN----NLYVKNLDDDMTEEILV 121
G + ++YVG R ++I++ NLY+KNLDD + +E L
Sbjct: 286 NGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLR 345
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
++FS FG ITS + + NG SKGFG SK LYV+ AQ+
Sbjct: 346 KEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQR 404
Query: 159 KAERKAILRAQF 170
K ER+ L+ Q+
Sbjct: 405 KEERRMHLKNQY 416
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 143/274 (52%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FG+I S KV V ++GKS+G+ FV
Sbjct: 114 MWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + +R ++ + F N++VKN+D +T
Sbjct: 174 HYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVT 233
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + S+FG+ S+ +S D G SKGFG + L+
Sbjct: 234 EKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWA 293
Query: 154 ARAQKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER LR E R+E LY KN++DE D+ L+ F GTI+S
Sbjct: 294 GRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSC 353
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M+ +RG+S+ + E T + M K
Sbjct: 354 KVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGK 387
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGS 148
G + +LYV LD +TE +L E F+ G + S+ + +DA N + G
Sbjct: 36 GGTGASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 95
Query: 149 KVL-YVARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTIS 204
+ L ++ + K I+ +Q + ++ + KN+++ +D L F+ G I
Sbjct: 96 RALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEIL 155
Query: 205 SVKIMRTDRGISKGHCMAIAQT 226
S K+ + G S+G QT
Sbjct: 156 SCKVGVDEDGKSRGFAFVHYQT 177
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 158/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN D++
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDEV 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA+G SKGFG K LY
Sbjct: 211 DDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALY 270
Query: 153 VARAQKKAERKAILRAQFERMR-KERAE------LYKNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +FER++ KE++ KN+++ +D+ +L++ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLREEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEEATKAVGEM---NGRMVGSK--PLHVTLGQ 377
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 134 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ + T
Sbjct: 194 HYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEAT 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F ++G +TS +++D G S+GFG + LYV
Sbjct: 254 EDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y+ +N + + +L+Q FS+ G I+S
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSA 373
Query: 207 KIMR 210
K+MR
Sbjct: 374 KVMR 377
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN++ Q+F ++GD+ SS + QEGKS+G+GFV ++T ESA A+++L
Sbjct: 242 NVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDEL 301
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNLDDD+ ++ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLR 361
Query: 122 EKFSEFGKITSLVISKD 138
+ FSEFG ITS + +D
Sbjct: 362 QMFSEFGPITSAKVMRD 378
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L + L ++FS+ G + S +V V++ +S GY +V Y++ A+E+
Sbjct: 63 YVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTR--RSLGYAYVNYNSTADGEKALEE 120
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 121 LNYTIIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGN 173
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D NG SKG+G K +YV K +R++
Sbjct: 174 ILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ E E + +Q F Q G ++S + R G S+G
Sbjct: 232 --KFEEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRG 282
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 61 SLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 121 LNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 180
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 181 QDENGNSKGY 190
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 36/271 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +ID+ L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRADRIQEGSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R A+ + +F N+YVKNL DM
Sbjct: 144 HFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVKNLHVDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + F EFGK+ S+ + +D +G S+GFG + LYV
Sbjct: 204 EQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D + + +L+ FS G I+S
Sbjct: 264 GRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M T+ G SKG + E T + M
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 94/192 (48%), Gaps = 38/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +D L +F +FG + S KV+ G S+G+GFV + E A A++ +
Sbjct: 192 NIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G V +LYVG +R +R E F NLYVKNLDD +++E L
Sbjct: 252 NGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLR 311
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
FS +G ITS + + G SKGF G+K LYVA AQ+
Sbjct: 312 TVFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQR 370
Query: 159 KAERKAILRAQF 170
K ERKAIL Q+
Sbjct: 371 KEERKAILTNQY 382
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
+G ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 QGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ D +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G I S K+ + G
Sbjct: 123 GNILSCKVACDEHG 136
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 131/244 (53%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ E F ++G +TS +++D G S+GFG + LYV
Sbjct: 253 DNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y+ +N + + +L+Q FS+ G I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN++ + + + ++F K+GD+ SS + QEGKS+G+GFV ++T E+A A+++L
Sbjct: 241 NVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDEL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G ELYVG ++ A R+++ S + NLY+KNLDDD+ ++ L
Sbjct: 301 NGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLR 360
Query: 122 EKFSEFGKITSLVISKDA 139
+ FSEFG ITS + +D+
Sbjct: 361 QMFSEFGPITSAKVMRDS 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 41/245 (16%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
TP + + +V L ++ L ++FS+ G + S +V +S GY +V Y
Sbjct: 48 TPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNY 107
Query: 63 STPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
++ A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 108 NSTPDGEKALEELNYTPIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDN 160
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
+ L + F+ FG I S +++D G SKG+G K +YV
Sbjct: 161 KALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVG 220
Query: 155 RAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
K +R++ +FE M+ +Y KNI+ +V + E ++ F + G ++S + R
Sbjct: 221 YHIPKKDRQS----KFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE 276
Query: 214 GISKG 218
G S+G
Sbjct: 277 GKSRG 281
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N S G K L
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 120 LNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 179
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 180 QDETGASKGY 189
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 196/463 (42%), Gaps = 107/463 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG I S KV G SK +GFV
Sbjct: 125 MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG I + DR + ++F N+Y KN+D D +
Sbjct: 185 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFS 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +GKITS+ + KD G SKGFG + +YV
Sbjct: 245 EEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D +L++ F G+I+S
Sbjct: 305 GRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSA 364
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQRA- 260
++M + G SKG + E T + R++Y K P++ L QR
Sbjct: 365 RVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGK----------PLYVALAQRKD 414
Query: 261 ---LQVYQAPDFRH---------GGMIPNGFSPP---PPSPLFLMAPDSVTQYRGAMMNG 305
Q+ Q R+ G IP F PP P F NG
Sbjct: 415 VRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGFFPP------------NG 462
Query: 306 HANFPMPLMLSNLQKPSYNYPISQ---PRAGQAAA---------------NNLTNG--NH 345
N P P + P P Q PR G NN NG
Sbjct: 463 RGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGANGGRQQ 522
Query: 346 RAAASNEN----------LSSMLVATSPDERKDILGQRLYPLV 378
R N N L++++ D++K ILG+ LYP +
Sbjct: 523 RGYYPNRNQNQKGRQQKDLAAIIANAPADQQKRILGEELYPKI 565
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L +++ L +IFS G + S +V KS GY +V + E AIE L
Sbjct: 54 YVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLN 113
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ +E + P +RR + N+++KNL + + L + F+ FGKI
Sbjct: 114 YSLIEGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPAIDNKALHDTFTAFGKIL 166
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + +YV + K +R+ +
Sbjct: 167 SCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRE----S 222
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ + E E K+ F G I+S+ + + G SKG
Sbjct: 223 KFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKG 273
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 137/271 (50%), Gaps = 31/271 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +ID + FS FG I S KV + + G SKGYGFV
Sbjct: 105 MWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGYGFV 164
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG-SSFNNLYVKNLDDDMTEEI 119
Y T ESA +AIEK+ G + ++ V PFI++ DR F NLYV+N EE
Sbjct: 165 HYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDPASVDVFTNLYVRNFPVSWDEEA 224
Query: 120 LVEKFSEFGKITSLVISKDA-----------------------NGTSKGFGSKVLYVARA 156
L + ++G+ITS++I +D NGT GS+ L V
Sbjct: 225 LKQFLDKYGEITSMMIKEDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPH 284
Query: 157 QKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
Q KA+R+A L++Q+ K + LY KN++D + L++ F Q G+I+S KIM
Sbjct: 285 QDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTDESLQELFGQFGSITSCKIM 344
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
R G+S+G E T + M+ K
Sbjct: 345 RDASGVSRGFGFVCFSRPEEATKAIAGMHLK 375
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L+++F+ G + S +V S KS GY +V Y + + A A+E L
Sbjct: 34 YVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALESLN 93
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ S N++VKNLD + + + FS FG I
Sbjct: 94 YIDIKGHPTRIMWSNKDPTLRK-------SGAGNIFVKNLDRSIDTKAFYDTFSHFGPIL 146
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE------------ 179
S ++ D NG SKG+G +V +++ ++AI + + ++ E
Sbjct: 147 SCKVAMDENGVSKGYG----FVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDP 202
Query: 180 --------LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
LY +N DE LKQ+ + G I+S+ I +G
Sbjct: 203 ASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKG 246
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYVARAQKKAERK 163
+LYV +L D+TE IL E F+ G ++S+ + +D+ T K G + V Y + +A +
Sbjct: 32 SLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSI-TRKSLGYAYVNYYSVQDAEAALE 90
Query: 164 AI----LRAQFER---------MRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKI 208
++ ++ R +RK A KN++ +D FS G I S K+
Sbjct: 91 SLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKV 150
Query: 209 MRTDRGISKGH 219
+ G+SKG+
Sbjct: 151 AMDENGVSKGY 161
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 152/295 (51%), Gaps = 41/295 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS GN FVKNL ++++ L+ FS FG+I S K+ V ++ KSKGYGFV
Sbjct: 90 MWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG----SSFNNLYVKNLDDDMT 116
Q+ T E+A AI+ G E +YVG F R++R ++ + F N++VKN D +
Sbjct: 150 QFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILD 209
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + F++FGKI S +S D +G GFG + L
Sbjct: 210 KEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKL 269
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV+R QKK ER A L +++ + ERA+ Y KN++D +D+ L++ F + G +
Sbjct: 270 YVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVI 329
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
S K+MR+D G SKG E ++ M A +G + + P++ ++ QR
Sbjct: 330 SAKVMRSDDGRSKGFGFVCFDKPDE---AVKAMTAMKGKMVCTK--PLYVSMAQR 379
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 39/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN A +D KL Q+F+KFG I S V V +GK G+GFV + P+ A A++ +
Sbjct: 198 NVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDM 257
Query: 76 QGATV--ERMELYVGPFIRRADRIQEGS--------------SFNNLYVKNLDDDMTEEI 119
Q + +LYV F ++ +R+ E NLY+KNLDD + +++
Sbjct: 258 QDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDM 317
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L F E+G + S + + +G SKGFG +K LYV+ A
Sbjct: 318 LRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMA 377
Query: 157 QKKAERKAILRAQF 170
Q+K +RKA + +Q+
Sbjct: 378 QRKEDRKAFIASQY 391
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 29/215 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L + FS G + S +V +S GY +V + PE A A+E +
Sbjct: 19 YVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMN 78
Query: 77 GATVERMELYVGPFIRR--ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
V + + RR R+ G N++VKNL+ + + L KFS FG I S
Sbjct: 79 FDIVHGRPIRIMWSQRRPSTSRVAAG----NVFVKNLNGSVNSKALYNKFSVFGNIVSCK 134
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE------ 179
++ D SKG+G A +KA E K I +F+ R ER+E
Sbjct: 135 LAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQS-RSERSEQAKRTT 193
Query: 180 ------LYKNINDEVDEIELKQYFSQCGTISSVKI 208
KN D +D+ +L+Q F++ G I S +
Sbjct: 194 NCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAV 228
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
N A+ N ++KNL ID+ L + F ++G++ S+KV+ S +G+SKG+GFV + P
Sbjct: 293 NERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKP 352
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADR 96
+ A+ A+ ++G V LYV R+ DR
Sbjct: 353 DEAVKAMTAMKGKMVCTKPLYVSMAQRKEDR 383
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+ E +L+EKFS G++ S+ + +DA T + G YV + + ++A
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDAL-TRRSLG--YAYVNFERPEDAKQA 73
Query: 165 I------------LRAQFERMRKERAEL------YKNINDEVDEIELKQYFSQCGTISSV 206
+ +R + + R + + KN+N V+ L FS G I S
Sbjct: 74 LETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSC 133
Query: 207 KIMRTDRGISKGH 219
K+ ++ SKG+
Sbjct: 134 KLAVDEQSKSKGY 146
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 133/253 (52%), Gaps = 63/253 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ID+ ++ FS FG+I S KV + G SKGYG
Sbjct: 86 MWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSKGYG-- 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YVG FI RA R++E F N+YVKN D++ T
Sbjct: 144 -------------------------YVGKFIPRAQRMREIGETTRKFTNVYVKNFDENFT 178
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
++ LV+ FS+FGKI S V+ K+ + SKGFG K LY
Sbjct: 179 DQCLVDLFSKFGKIQSCVVMKE-DDKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLY 237
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKKAER+A L+ ++E ++ ER + Y KN++D VD+ +L++ F + G I+S
Sbjct: 238 VGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITS 297
Query: 206 VKIMRTDRGISKG 218
K+M ++G SKG
Sbjct: 298 AKVMTDEKGQSKG 310
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L +FSKFG IQS VV+ ++ KSKG+GFV + PE A A++++
Sbjct: 167 NVYVKNFDENFTDQCLVDLFSKFGKIQSC-VVMKEDDKSKGFGFVSFENPEDAEAAVKEM 225
Query: 76 QGATVER-MELYVGPFIRRADR---------------IQEGSSFNNLYVKNLDDDMTEEI 119
+ +LYVG ++A+R IQ+ N LY+KNLDD + +
Sbjct: 226 NEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVN-LYLKNLDDSVDDAQ 284
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARA 156
L + F +FG ITS + D G SKGF G+K LYVA A
Sbjct: 285 LRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVALA 344
Query: 157 QKKAERKAILRAQF 170
Q+K +RKA L +Q
Sbjct: 345 QRKEDRKAQLASQL 358
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 97 IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARA 156
I + + +LYV +L D+TE +L EKFS G + S+ + +DA T + G YV
Sbjct: 5 IAQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAV-TRRSLG--YAYVNYQ 61
Query: 157 QKKAERKAILRAQFER--------MRKERAE----------LYKNINDEVDEIELKQYFS 198
Q +A+ F+ M +R KN++ ++D + FS
Sbjct: 62 QTPDAERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFS 121
Query: 199 QCGTISSVKIMRTDRGISKGH 219
G I S K+ + G+SKG+
Sbjct: 122 NFGNILSCKVATDENGVSKGY 142
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 163/329 (49%), Gaps = 74/329 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL N ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 72 MWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 129
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
T E+A +I+K+ G + ++YVG FI R ++ ++ F N+YVKN +D +E L
Sbjct: 130 H--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEEKAKLFTNVYVKNFTEDFDDEKL 187
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG----------------------SKVLYVARAQK 158
E F +GKIT ++ +D G SKGFG K LYVARAQK
Sbjct: 188 KEFFEPYGKITKVMSKED--GKSKGFGFVAFETTEAAEAAVQALNGKGEGKSLYVARAQK 245
Query: 159 KAERKAILRAQFERMRKERAE----LY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
KAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S K+ +
Sbjct: 246 KAERQQELKRKFEELKQKRHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV--DEE 303
Query: 214 GISKGH---C-----------------------MAIAQTKRERTSYLRIMYAKQGPGLAS 247
G SKG C +A+AQ K ER + L Y + G+
Sbjct: 304 GRSKGFGFVCFNPESEATCAVTELNGRVVGSLYVALAQRKEERKADLASQYMRHMTGM-- 361
Query: 248 TIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
R Q+ Q P+ G +P
Sbjct: 362 -----------RMQQLGQQPNAASGFFVP 379
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 152/295 (51%), Gaps = 41/295 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS GN FVKNL ++++ L+ FS FG+I S K+ V ++ KSKGYGFV
Sbjct: 90 MWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG----SSFNNLYVKNLDDDMT 116
Q+ T E+A AI+ G E +YVG F R++R ++ + F N++VKN D +
Sbjct: 150 QFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILD 209
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-------------------------SKVL 151
+E L + F++FGKI S +S D +G GFG + L
Sbjct: 210 KEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKL 269
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
YV+R QKK ER A L +++ + ERA+ Y KN++D +D+ L++ F + G +
Sbjct: 270 YVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVI 329
Query: 205 SVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
S K+MR+D G SKG E ++ M A +G + + P++ ++ QR
Sbjct: 330 SAKVMRSDDGRSKGFGFVCFDKPDE---AVKAMTAMKGKMVCTK--PLYVSMAQR 379
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 39/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN A +D KL Q+F+KFG I S V V +GK G+GFV + P+ A A++ +
Sbjct: 198 NVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDM 257
Query: 76 QGATV--ERMELYVGPFIRRADRIQEGS--------------SFNNLYVKNLDDDMTEEI 119
Q + +LYV F ++ +R+ E NLY+KNLDD + +++
Sbjct: 258 QDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDM 317
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L F E+G + S + + +G SKGFG +K LYV+ A
Sbjct: 318 LRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMA 377
Query: 157 QKKAERKAILRAQF 170
Q+K +RKA + +Q+
Sbjct: 378 QRKEDRKAFIASQY 391
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 29/215 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L + FS G + S +V +S GY +V + PE A A+E +
Sbjct: 19 YVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMN 78
Query: 77 GATVERMELYVGPFIRR--ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
V + + RR R+ G N++VKNL+ + + L KFS FG I S
Sbjct: 79 FDIVHGRPIRIMWSQRRPSTSRVAAG----NVFVKNLNGSVNSKALYNKFSVFGNIVSCK 134
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE------ 179
++ D SKG+G A +KA E K I +F+ R ER+E
Sbjct: 135 LAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQS-RSERSEQAKRTT 193
Query: 180 ------LYKNINDEVDEIELKQYFSQCGTISSVKI 208
KN D +D+ +L+Q F++ G I S +
Sbjct: 194 NCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAV 228
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
N A+ N ++KNL ID+ L + F ++G++ S+KV+ S +G+SKG+GFV + P
Sbjct: 293 NERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKP 352
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADR 96
+ A+ A+ ++G V LYV R+ DR
Sbjct: 353 DEAVKAMTAMKGKMVCTKPLYVSMAQRKEDR 383
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+ E +L+EKFS G++ S+ + +DA T + G YV + + ++A
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDAL-TRRSLG--YAYVNFERPEDAKQA 73
Query: 165 I------------LRAQFERMRKERAEL------YKNINDEVDEIELKQYFSQCGTISSV 206
+ +R + + R + + KN+N V+ L FS G I S
Sbjct: 74 LETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSC 133
Query: 207 KIMRTDRGISKGH 219
K+ ++ SKG+
Sbjct: 134 KLAVDEQSKSKGY 146
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 151/280 (53%), Gaps = 43/280 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGF 59
MWS + R SG+GN FVKNL IDN +L+ FS FG+I S KVV + G SKGYG+
Sbjct: 83 MWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGY 142
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A AIEKL G ++ E+ VG F+RR +R + + + N+++KN+ + TE+
Sbjct: 143 VHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQ-ADWTNVFIKNIPFEWTEDK 201
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-------------------------------S 148
L E+F FG++ S K+ G S GFG +
Sbjct: 202 LREEFEGFGEVVS-AKPKEVQG-SLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVT 259
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCG 201
KVL+V RAQKKAER+ LRA++E + +R LY KN++D V + L+ FS G
Sbjct: 260 KVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTDDVLRDEFSAMG 319
Query: 202 TISSVKIMRTDR-GISKGHCMAIAQTKRERTSYLRIMYAK 240
TI+S ++M+ + GIS+G T + T + M K
Sbjct: 320 TITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGK 359
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN+ KL + F FG++ S+K Q S G+GFV ++T E+A A++++
Sbjct: 187 NVFIKNIPFEWTEDKLREEFEGFGEVVSAKPKEVQ--GSLGFGFVNFATHEAAAAAVKEM 244
Query: 76 ---------QGATVERMELYVGPFIRRADR------------IQEGSSFN--NLYVKNLD 112
G V ++ L+VG ++A+R I + F NLYVKNLD
Sbjct: 245 NDKEFTVTEDGEEVTKV-LFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNLD 303
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------S 148
D +T+++L ++FS G ITS + KD G S+GFG
Sbjct: 304 DTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILG 363
Query: 149 KVLYVARAQKKAERKAILRAQFERMR 174
K ++VA AQ++ R+A L AQ + R
Sbjct: 364 KPIFVALAQRRDVRRAQLEAQHNQGR 389
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPES 67
A+ G+ N +VKNL T+ + L FS G I S++V+ + G S+G+GFV YSTPE
Sbjct: 290 AKFQGV-NLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPED 348
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADR 96
A A+ ++ G + ++V RR R
Sbjct: 349 ATRAVNEMNGKIILGKPIFVALAQRRDVR 377
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 214/494 (43%), Gaps = 133/494 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +ID+ L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F + +R E F N+YVKNL DM
Sbjct: 144 HFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + F FG + S+ + +D +G S+GFG + LYV
Sbjct: 204 EQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+AER+ L+ +FE+++++R Y KN++D + + +L+ FS G I+S
Sbjct: 264 GRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSA 323
Query: 207 KIMRTDRGISKGH--------------------CM--------AIAQTKRERTSYLRIMY 238
K+M T+ SKG C+ A+AQ K ER + L Y
Sbjct: 324 KVM-TEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQY 382
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP--------------- 283
K+ + + PV L +Q P+ +P G PP
Sbjct: 383 MKRLSTVQALSRPV--------LGSFQQPN---SYFLPTGAQPPAQAPCCGSSGSVAPVQ 431
Query: 284 PSPLFLMAPD-----SVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAAN 338
P+P + P SV + G AN +S++++ S P P + AN
Sbjct: 432 PAPRWTAQPQRPSTASVVRPPGLPRRPQAN------VSSVRQASTQVPHLAPHT-KKVAN 484
Query: 339 NLTNGNHRAAASNENLS-------------------------------SMLVATSPDERK 367
T RAA S E S SML A E+K
Sbjct: 485 IGTQTMGRAACSTEGPSLLPCTCSSTVHIAHGVPEPAVHVPGQEPLTASMLAAAPLHEQK 544
Query: 368 DILGQRLYPLVKKL 381
++G+RLY L+ ++
Sbjct: 545 QMIGERLYHLIPEV 558
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK 158
+G ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+ Q
Sbjct: 6 QGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDV-ATRRSLG--YAYINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + + KN+ D +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRG 214
G I S K+ + G
Sbjct: 123 GNILSCKVACDEHG 136
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 36/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL TIDN L +FS FG+I S KVV G SKGY +V
Sbjct: 91 MWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R +E ++F N++VKN DD+
Sbjct: 150 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDI 209
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L + FSE+G S+ + +DA G SKGFG KVL
Sbjct: 210 DDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLC 269
Query: 153 VARAQKKAERKAILRAQFERMR-KER-----AELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +FER++ KE+ +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 270 VGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISR 329
Query: 206 VKIM 209
K+M
Sbjct: 330 AKVM 333
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN ID+ KL+++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ +L
Sbjct: 199 NVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLEL 258
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ L VG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 259 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLK 318
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 319 EEFSSFGSISRAKVMMEV-GQGKGFG 343
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 47/233 (20%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQG 77
V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 79
Query: 78 ATVERMELYVGPFIRRA-----DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+L G R DR+++ S N+++KNLD + L FS FG I S
Sbjct: 80 -----FDLINGKPFRLMWSQPDDRLRK-SGVGNIFIKNLDKTIDNRALFYLFSAFGNILS 133
Query: 133 LVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQ 169
+ D NG SKG+ ++ +YV R + ER A +R
Sbjct: 134 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT- 191
Query: 170 FERMRKERAEL----YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ERA KN D++D+ +L + FS+ G SVK++R G SKG
Sbjct: 192 -----RERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKG 239
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 35/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG I S KV ++ G S GYGFV
Sbjct: 154 MWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG-SLGYGFV 212
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y + ++A AI+ + G + ++YVG I + DR I+E + + N+YVKNLD +T
Sbjct: 213 HYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVT 272
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F ++GKITS I+ D G S+GFG + L++
Sbjct: 273 QEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFL 332
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +E + E+ Y KN+ ++ D+ L++ F+ GT +S
Sbjct: 333 GRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSA 392
Query: 207 KIMRTDRGISKG 218
K+MRT G S+G
Sbjct: 393 KVMRTPTGASRG 404
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL + + ++F K+G I S+ + QEGKS+G+GFV +S E A A+E+L
Sbjct: 261 NVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEEL 320
Query: 76 QGATVERMELYVGPFIRRADRIQE-----GSSFN---------NLYVKNLDDDMTEEILV 121
+L++G ++++R +E ++ N NLY+KNL +D +E L
Sbjct: 321 NDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQ 380
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG TS + + G S+GFG ++ LYVA AQ+
Sbjct: 381 EEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQR 440
Query: 159 KAERKAILRAQF 170
K R L AQ
Sbjct: 441 KDVRHQQLAAQM 452
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 42/231 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L +IF+ G + S +V +S GY +V + E + A+E+L
Sbjct: 83 YVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQLN 142
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P RRA + N+++KNLD+ + + L + F+ FGKI
Sbjct: 143 YTPIRGRPCRIMWSQRDPGQRRAGQ-------GNIFIKNLDEAIDNKALHDTFAAFGKIL 195
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ + +G S G+G K +YV K +R+ A
Sbjct: 196 SCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQ----A 250
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ E R +Y KN++ V + E ++ F + G I+S I G S+G
Sbjct: 251 KIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRG 301
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 140/271 (51%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN ++KNL IDN LH FS FG I S K+ + G S+G+GFV
Sbjct: 120 MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
Y + ESA AI+ + G + +++VGP + ++DR+Q + +SF N+++KNL ++T
Sbjct: 180 HYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEIT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E E ++FG+ +S+ +S + G GFG L+
Sbjct: 240 EAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFA 299
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RA+KK ER LR Q+E R E+ Y KN++D +D+ +L+ F+ GTI+S
Sbjct: 300 GRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSA 359
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G SKG + E T + M
Sbjct: 360 KVMVDEAGKSKGFGFVCYSSPEEATKAVTEM 390
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KNL + I + ++ +KFG+ S + + EGK G+GFV Y + A+ AI+ L
Sbjct: 228 NVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGL 287
Query: 76 QGATVERMELYVGPFIR---RADRIQ---EGSSFN--------NLYVKNLDDDMTEEILV 121
+ +L+ G + RAD ++ E S NLY+KNLDD + ++ L
Sbjct: 288 SETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLR 347
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F+ G ITS + D G SKGFG K LYV AQ+
Sbjct: 348 AEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQR 407
Query: 159 KAERKAILRAQFERMRKER 177
K R++ L+ Q + + R
Sbjct: 408 KDVRRSQLQQQIQAKNQMR 426
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ L +IF+ G + S +V +S GY +V + + A+E+L
Sbjct: 49 YVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELN 108
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ ++ + + D + N+Y+KNLD + + L + FS FG+I S I+
Sbjct: 109 YSPIKERPCRI--MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIA 166
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D G S+GFG K ++V K++R FE
Sbjct: 167 TDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDR----MQSFEEQ 222
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ ++ KN+ E+ E E ++ ++ G SSV + D G G
Sbjct: 223 KNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTG 268
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLYV 153
+LYV LD +TE +L E F+ G +TS+ + +DA N ++ G + L
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 154 ARAQKKAERKA-ILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
ER I+ +Q + +RK A +Y KN++ +D L FS G I S KI
Sbjct: 107 LNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIA 166
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 167 TDEFGNSRG 175
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 148/266 (55%), Gaps = 37/266 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKNL DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G+I S+ + +DA+G SKGFG KVLY
Sbjct: 211 NDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERT 231
K+M + G KG + + E T
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEAT 355
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F ++G +TS +++D G S+GFG + LYV
Sbjct: 253 EDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y+ +N + + +L++ F G+I+S
Sbjct: 313 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLREMFKDFGSITSA 372
Query: 207 KIMR 210
K+MR
Sbjct: 373 KVMR 376
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+A+ + Q+F K+GD+ SS + QEGKS+G+GFV ++T ESA A+++L
Sbjct: 241 NVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDEL 300
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+LYVG ++ A R+++ + + NLY+KNLDDD+ ++ L
Sbjct: 301 NNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLR 360
Query: 122 EKFSEFGKITSLVISKD 138
E F +FG ITS + ++
Sbjct: 361 EMFKDFGSITSAKVMRE 377
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+ A+E+L
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEELN 121
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 122 YTIIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D G SKG+G K +YV K +R++
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 230
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI +V E + +Q F + G ++S + R G S+G
Sbjct: 231 KFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG 281
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 135/241 (56%), Gaps = 35/241 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 97 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 155
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 156 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 215
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 216 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 275
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 276 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 335
Query: 207 K 207
K
Sbjct: 336 K 336
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 92/207 (44%), Gaps = 45/207 (21%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 197 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 256
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 257 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 316
Query: 115 MTEEILVEKFSEFGKITS---------LVISKDANGTS---------------------- 143
+ ++ L ++FS +G ITS S D GT
Sbjct: 317 IDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALSGLKEEATKAVTEMNG 376
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQF 170
+ G+K LYVA AQ+K ERKAIL Q+
Sbjct: 377 RIVGTKPLYVALAQRKEERKAILTNQY 403
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 48/243 (19%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK------SKGYGFVQYSTP-- 65
+ + +V +L + L++ FS G I S +V + S GY ++ + P
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPAD 69
Query: 66 --------ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
E ALD + E L+G + M P +R+ S N+++KNL+D +
Sbjct: 70 GEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSI 122
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + FS FG I S + D +G S+GFG A ++A +RK
Sbjct: 123 DNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 181
Query: 166 LRAQFERMRKERAEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
+ F+ R+ AEL KN+ +VDE L+ FSQ G + SVK+MR + G
Sbjct: 182 V-GHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 240
Query: 215 ISK 217
S+
Sbjct: 241 HSR 243
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG----TSKGFGSKVLYV-- 153
G +LYV +L D+TE +L EKFS G I S+ + +D T + G +
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQ 66
Query: 154 -ARAQKKAER--KAILRAQFERMRKERAELY------------------KNINDEVDEIE 192
A +++A+R +A+ FE ++ + + KN+ D +D
Sbjct: 67 PADGEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKA 126
Query: 193 LKQYFSQCGTISSVKIMRTDRG 214
L FS G I S K++ + G
Sbjct: 127 LYDTFSTFGNILSCKVVCDEHG 148
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SG+GN +KNL ++DN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 196 MWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFV 254
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + +A AI+++ G + ++ V PF R DR E S F N+YVKN +DM
Sbjct: 255 HFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTSEFTNVYVKNFGEDMD 314
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L FS++G+ S+ + D++G SKGFG ++++V
Sbjct: 315 DERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFV 374
Query: 154 ARAQKKAERKAILRAQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE ++++ A +LY KN++D VD+ L++ FS G+IS V
Sbjct: 375 GRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRV 434
Query: 207 KIMRTDRGISKG 218
K+M + G KG
Sbjct: 435 KVM-EEEGQRKG 445
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R S N +VKN +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A
Sbjct: 297 RTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 356
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSF--------------NNLYVKNLDDDM 115
A+E++ G + ++VG ++ +R E LY+KNLDD +
Sbjct: 357 KAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTV 416
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
++ L FS FG I+ + + ++ G KGFG
Sbjct: 417 DDDRLRRAFSSFGSISRVKVMEE-EGQRKGFG 447
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ ++KNL T+D+ +L + FS FG I KV+ +EG+ KG+G V +S+PE A
Sbjct: 401 RCQGV-KLYIKNLDDTVDDDRLRRAFSSFGSISRVKVM-EEEGQRKGFGLVCFSSPEEAA 458
Query: 70 DAIEKLQG 77
A+ ++ G
Sbjct: 459 KAMTQMNG 466
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 35/188 (18%)
Query: 82 RMELYVGPFIRRADRIQEGSS-------------FNNLYVKNLDDDMTEEILVEKFSEFG 128
R E VGP RR+ +QE S +LYV +L D TE++L KFS G
Sbjct: 91 RAEFRVGP--RRS--VQEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAG 146
Query: 129 KITSLVISKDANGTSKGFG---SKVLYVARAQK--------KAERKAILRAQFER---MR 174
+ S+ I +D T + G L A AQK E K I +R +R
Sbjct: 147 PVLSIRICRDV-ATRRPLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLR 205
Query: 175 KERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTS 232
K + KN++ VD L ++FS G I S K+M D+G SKG+ Q++
Sbjct: 206 KSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADC 264
Query: 233 YLRIMYAK 240
++ M K
Sbjct: 265 AIQEMNGK 272
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 157/298 (52%), Gaps = 52/298 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + RIM +K P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSK----------PLHVTLGQ 377
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 132/249 (53%), Gaps = 49/249 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T E+A +I+++ G + +L F N+YVKN +DMT++ L
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKL-----------------FTNVYVKNFGEDMTDDKL 187
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
E F ++G ITS + +G S+GFG K +YV RA
Sbjct: 188 KEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRA 247
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S K+M
Sbjct: 248 QKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM 307
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 308 -MEEGRSKG 315
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 157/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKNL DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNLGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L FSE+G+ S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +DE +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKEEFSAFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVICFSSFEEATKAVEEM---NGRLVGSK--PLHVTLGQ 377
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 141/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL + IDN L+ FS FG+I SSK+ + G SKG+GFV
Sbjct: 114 MWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSKIATDENGNSKGFGFV 173
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R + ++F N+YVKN+ D T
Sbjct: 174 HFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTT 233
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F + GK +S+V+ K +G KGFG + LYV
Sbjct: 234 EEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYV 293
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D+ +LK+ F+ GTI+S
Sbjct: 294 GRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITST 353
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG + E T
Sbjct: 354 KVMRTENGKSKGFGFVCFSSPEEAT 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + ++F K G S + ++GK KG+GFV Y E AL A+E+L
Sbjct: 222 NVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEEL 281
Query: 76 QGATVERMELYVGPFIRRADRIQ------EGSSFN--------NLYVKNLDDDMTEEILV 121
+ ELYVG ++ +R+Q E + NL++KNLDD + +E L
Sbjct: 282 NNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLK 341
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS + + NG SKGFG K LYVA AQ+
Sbjct: 342 EEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQR 401
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 402 KEVRRSQLAQQIQ 414
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N F+KNL +ID+ KL + F+ FG I S+KV+ ++ GKSKG+GFV +S+PE A
Sbjct: 319 AKYQGV-NLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEA 377
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 378 TKAITEKNQQIVAGKPLYVAIAQRKEVR 405
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L ++ L+ IFS G + S +V K S GY +V ++ E+ AIE+L
Sbjct: 43 YVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIERLN 102
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ N+++KNL+ D+ + L + FS FG I
Sbjct: 103 YTPIKGRLCRIMWSQRDPALRKKGN-------GNIFIKNLNADIDNKALYDTFSVFGNIL 155
Query: 132 SLVISKDANGTSKGFG 147
S I+ D NG SKGFG
Sbjct: 156 SSKIATDENGNSKGFG 171
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARA 156
Q S+ +LYV +LD ++E +L + FS G +TS+ + +DA TS G+ YV A
Sbjct: 34 QSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYA----YVNFA 89
Query: 157 QKKAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFS 198
+A + AI R + ++ + KN+N ++D L FS
Sbjct: 90 DHEAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFS 149
Query: 199 QCGTISSVKIMRTDRGISKG 218
G I S KI + G SKG
Sbjct: 150 VFGNILSSKIATDENGNSKG 169
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 141/271 (52%), Gaps = 31/271 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL ID L+ FS FG I S KV + G SKGYGFV
Sbjct: 110 MWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEI 119
Y+T ESA +AIEK+ G + ++ V PF+RR +R G F NLYV+N D TE+
Sbjct: 170 HYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDVFTNLYVRNFPDTWTEDD 229
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKV-----------------------LYVARA 156
L + FS++G+ITSL++ D G F + V + V +
Sbjct: 230 LHQTFSKYGEITSLLLKSDDKGRRFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQH 289
Query: 157 QKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
KA R A+L+AQ++ +++ LY KN++D+ D+ L+ F Q GT++S K+M
Sbjct: 290 MDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVM 349
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
R G+S+G E T + M+ K
Sbjct: 350 RDHNGVSRGFGFVCFSRPDEATKAVAGMHLK 380
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 32/221 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIE--- 73
+V NL + L+++F+ G + S +V S KS GY +V Y + A A+E
Sbjct: 39 YVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALECLN 98
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+++G M P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 99 YIEIKGQPARIMWSERDPSLRK-------SGTGNIFVKNLDKAIDTKALYDTFSHFGTIL 151
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------ILRAQFERMRKER----- 177
S ++ D+ G SKG+G + K+A K + A F R R ER
Sbjct: 152 SCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLR-RNERTSTVG 210
Query: 178 ---AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
LY +N D E +L Q FS+ G I+S+ + D+G
Sbjct: 211 DVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKG 251
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 134/270 (49%), Gaps = 31/270 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +ID L+ FS FG I S KV V G SK YGFV
Sbjct: 101 MWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + + V PF+R+ DR E F NLYV+N D EE L
Sbjct: 161 HYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDRESE-EVFTNLYVRNFPADWDEEAL 219
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+ ++G+ITS+++ +D+ G F S+ L V Q
Sbjct: 220 RQFLEKYGEITSMMLKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQ 279
Query: 158 KKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KA+R+ +LRAQF + ++ + LY KN++D D+ L + F GTI+S K+M
Sbjct: 280 DKAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVML 339
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S+G +E T + M+ K
Sbjct: 340 DANNHSRGFGFVCFTNPQEATKAIAAMHLK 369
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 28/231 (12%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYS 63
P + ++ + +V +L + L+++F+ G + S +V S KS GY +V Y
Sbjct: 17 PMRDTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYY 76
Query: 64 TPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
+ + A +A+E L +G M P +RR S N++VKNLD + +
Sbjct: 77 STQDAQEALENLNYIEIKGHPTRIMWSNRDPSLRR-------SGAGNIFVKNLDKSIDTK 129
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG--------------SKVLYVARAQKKAERKA 164
L + FS FG I S ++ DA+G SK +G KV + K+ E
Sbjct: 130 SLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAP 189
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
LR Q + LY +N + DE L+Q+ + G I+S+ + +G
Sbjct: 190 FLRKQDRESEEVFTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKG 240
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 35/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L E FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMR 210
K R
Sbjct: 324 KKRR 327
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L+G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S ++ D +G S+GFG A ++A +RK + F+ R+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV-GHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
AEL KN+ +VDE L++ FSQ G + SVK+MR + G S+
Sbjct: 181 AELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSR 231
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 134/270 (49%), Gaps = 31/270 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +ID L+ FS FG I S KV V G SK YGFV
Sbjct: 101 MWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + + V PF+R+ DR E F NLYV+N D EE L
Sbjct: 161 HYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREGE-EVFTNLYVRNFPADWNEEAL 219
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+ ++G+ITS+++ +D+ G F S+ L V Q
Sbjct: 220 RQFLEKYGEITSMMLKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPHQ 279
Query: 158 KKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KA+R+ +LRAQF + ++ + LY KN++D D+ L + F GTI+S K+M
Sbjct: 280 DKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVML 339
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S+G +E T + M+ K
Sbjct: 340 DANNHSRGFGFVCFTNPQEATKAIAAMHLK 369
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 28/218 (12%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L+++F+ G + S +V S KS GY +V Y + + A A+E L
Sbjct: 30 YVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESLN 89
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +RR S N++VKNLD + + L + FS FG I
Sbjct: 90 YIEIKGHPTRIMWSNRDPSLRR-------SGAGNIFVKNLDKSIDTKSLYDTFSHFGPIL 142
Query: 132 SLVISKDANGTSKGFG--------------SKVLYVARAQKKAERKAILRAQFERMRKER 177
S ++ DA+G SK +G KV + K+ E LR Q +
Sbjct: 143 SCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREGEEVF 202
Query: 178 AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
LY +N + +E L+Q+ + G I+S+ + +G
Sbjct: 203 TNLYVRNFPADWNEEALRQFLEKYGEITSMMLKEDSKG 240
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 155/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA G SKGFG KVLY
Sbjct: 211 DDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRVVGSK--PLHVTLGQ 377
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 171/329 (51%), Gaps = 40/329 (12%)
Query: 1 MWSTPN-SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
MWS + S R +G GN +VKNL +I + L ++F+ FG I S KVV + G+SKG+GF
Sbjct: 95 MWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQSKGFGF 153
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTE 117
VQ+ T +SA+ A L G+ V+ +L+V FI + +R+ + F N+YVKNL +++TE
Sbjct: 154 VQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITE 213
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVA 154
+IL FS++G ++S+V+ +D G S+GF GSK L+V
Sbjct: 214 DILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVG 273
Query: 155 RAQKKAERKAILRAQFE-----RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+A K+ ER+ +L+ ++ + + LY KN+++ +++ L++ F + G I S K+
Sbjct: 274 KALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKV 333
Query: 209 MRTDRGISKGH---CMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQ 265
MR + G SKG C + + ++ YL ++ G L + +R Q +
Sbjct: 334 MRHENGRSKGFGFVCFSNREESKQAKRYLN-GFSVDGKLLVVRVAERKEDRLKRLQQYFH 392
Query: 266 APDFRHGGMIPNGFSPPPPSPLFLMAPDS 294
A RH P P P P+ P S
Sbjct: 393 AQP-RHYTQAP--LVPSPAQPVLSYVPSS 418
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 36/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L + FSE+G S+ + +DA G SKGFG KVL
Sbjct: 211 DDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLC 270
Query: 153 VARAQKKAERKAILRAQFERMR-KERAE-----LY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +FER++ K++ +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISR 330
Query: 206 VKIM 209
K+M
Sbjct: 331 AKVM 334
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN ID+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ +L
Sbjct: 200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFNNL-------------YVKNLDDDMTEEILV 121
G +++ L VG ++ +R+ E F L Y+KNLD+ + +E L
Sbjct: 260 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 320 EEFSLFGSISRAKVMMEV-GQGKGFG 344
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 39/229 (17%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQG 77
V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 78 ATVERMELYVG-PF---IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+L G PF + D S N+++KNLD + L FS FG I S
Sbjct: 81 -----FDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 134 VISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
+ D NG SKG+ ++ +YV R + ER A +R
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT-- 192
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R R ++ KN D++D+ +LK+ FS+ G SVK++R G SKG
Sbjct: 193 -RDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG 240
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 130/238 (54%), Gaps = 40/238 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S K+V + G S+GYGFV
Sbjct: 90 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFV 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F+ R +R++ + FNN+YVKN +++
Sbjct: 149 HFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEIN 208
Query: 117 EEILVEKFSEFGKITSLVISKD--------------------------ANGTSKGFGSKV 150
+E L + F +GKI S + D NG K+
Sbjct: 209 DETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDN--SGKI 266
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCG 201
LYV RAQKK ER+A L+ +FER+R ER Y KN++D +D+ L++ F+Q G
Sbjct: 267 LYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFG 324
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 40/224 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAI- 72
+V +L + L + FS G + +V +S GY +V + P E ALD +
Sbjct: 19 YVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ ++G + M P +R+ S N+++KNLD + + L + FS FG I
Sbjct: 79 FDTIKGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 131
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S I D +G S+G+G K ++V R + ER +L
Sbjct: 132 SCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLG- 189
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
++MRK KN ++E+++ L+ F G I S K+M D
Sbjct: 190 --DKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDD 231
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 35/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMR 210
K R
Sbjct: 324 KKRR 327
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L+G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S ++ D +G S+GFG A ++A +RK + F+ R+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV-GHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
AEL KN+ +VDE L+ FSQ G + SVK+MR + G S+
Sbjct: 181 AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR 231
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 139/258 (53%), Gaps = 41/258 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL ++ID+ L FS FG+I S KV + G+S+GYG+V
Sbjct: 86 MWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYV 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y + ++A DAI K+ T+ E+YVG F+RR +R + S + NLYVKN D EE L
Sbjct: 146 HYESEDAATDAINKINSMTICDKEVYVGHFVRRTERSGQ-SDWTNLYVKNFPADWDEETL 204
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF---------------------------GSKV--- 150
+ F FG ITS + A+G++ G+ G+
Sbjct: 205 RKAFETFGAITSCKAAAAADGSAFGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLK 264
Query: 151 --LYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDE-------IELKQYFSQCG 201
L+V RAQKK ER+ L+A+F+ + ER + Y+ +N V +L++ F++ G
Sbjct: 265 APLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYG 324
Query: 202 TISSVKIMRTD-RGISKG 218
TI+S ++MR G S+G
Sbjct: 325 TITSARVMREPATGTSRG 342
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 51/208 (24%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + D L + F FG I S K + +G + +G+V + ++A+ A++ L
Sbjct: 189 NLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDAAVAAMDAL 246
Query: 76 QG-----------ATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKN 110
G T + L+VG ++ +R +E + F+ NL+VKN
Sbjct: 247 NGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKN 306
Query: 111 LDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFG---------------------- 147
LDD + ++ L E F+E+G ITS V+ + A GTS+GFG
Sbjct: 307 LDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLV 366
Query: 148 -SKVLYVARAQKKAERKAILRAQFERMR 174
K ++VA AQ+K R+A L AQ + R
Sbjct: 367 LGKPIFVALAQRKEVRRAQLEAQHAQRR 394
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +LA+ L +IF+ G + S +V +S GY +V + A A++ +
Sbjct: 15 YVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMN 74
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + + D S N++VKNLD + + L + FS FG I S ++
Sbjct: 75 YTLIKSKPCRI--MWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVA 132
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKERA----- 178
D G S+G+G YV + A AI + F R R ER+
Sbjct: 133 TDEAGRSQGYG----YVHYESEDAATDAINKINSMTICDKEVYVGHFVR-RTERSGQSDW 187
Query: 179 -ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
LY KN + DE L++ F G I+S K G + G
Sbjct: 188 TNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSAFG 229
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 51/293 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ + +A AI + G + ++Y +R DR ++F N++VKN DDM +E L
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDR----ATFTNVFVKNFGDDMDDEKL 206
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
+ FSE+G S+ + +DA+G SKGFG KVLYV RAQ
Sbjct: 207 KDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 266
Query: 158 KKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS K+M
Sbjct: 267 KKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFSSFGSISRAKVM- 325
Query: 211 TDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQ 258
+ G KG + + E T + RIM +K P+H TL Q
Sbjct: 326 VEVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSK----------PLHVTLGQ 368
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 201/466 (43%), Gaps = 112/466 (24%)
Query: 26 IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85
IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G + ++
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 86 YVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG 141
+VG F R +R E F N+Y+KN +DM +E L E F +FG S+ + D +G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 142 TSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERMRKERA 178
SKGFG K +YV RAQKK ER+ L+ +FE+M+++R
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 179 ELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH---C-------- 220
Y KN++D +D+ L++ FS GTI+S K+M + G SKG C
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEAT 238
Query: 221 -----------------MAIAQTKRERTSYLRIMYAKQGPGLASTIFPV----------- 252
+A+AQ K ER ++L Y ++ + + PV
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 298
Query: 253 -----HPTLYQRA--------LQVYQAPDFRHGGMIPNGF----------SPPPP----S 285
P RA Q+ +P + G P+ F +P PP
Sbjct: 299 YFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMR 358
Query: 286 PLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPS------YNYP--ISQPRAGQAAA 337
P P ++ R A + P P + P+ Y Y + P+ A
Sbjct: 359 PASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQ 418
Query: 338 NNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLYPLVKKL 381
+T + +SML P E+K +LG+RL+PL++ +
Sbjct: 419 PQVTMQQPAVHVQGQEPLTASMLAFAPPQEQKQMLGERLFPLIQAM 464
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 76 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 135
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 136 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 195
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 196 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 254
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L Q+ +RM RA
Sbjct: 255 YVALAQRKEERQAHLTNQYMQRMASVRA 282
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGSSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ ++T
Sbjct: 189 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVT 248
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E F G +TS I+++ +G S+GFG + LYV
Sbjct: 249 DDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYV 308
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y+ +N + + +L+ F++ G I+S
Sbjct: 309 GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPITSA 368
Query: 207 KIMR 210
K+MR
Sbjct: 369 KVMR 372
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 58 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELN 117
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 118 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 170
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG+SKG+G K +YV K +R++
Sbjct: 171 SCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS---- 226
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ EV + E ++ F + G ++S I R G S+G
Sbjct: 227 KFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRG 277
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-YV 153
LYV LD +TE +L E FS+ G + S+ + +DA N S G K L +
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 176
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 177 DENGSSKGY 185
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKNL DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA+G SKGFG K+LY
Sbjct: 211 DDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F ++ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKEEFSPFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEAAKAVDEM---NGRTVGSK--PLHVTLGQ 377
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 40/192 (20%)
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVG-PF----IRRADRIQEGSSFNNLYVKN 110
GYG+V + P A A+ + +L G PF + DR+++ S N+++KN
Sbjct: 60 GYGYVNFRFPADAEWALNTMN------FDLLNGKPFRLMWSQPDDRLRK-SGVGNIFIKN 112
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----------------------- 147
LD + L FS FG I S + D NG SKG+
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLN 171
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
++ +YV R + ER A +R R R ++ KN+ D++D+ +LK+ FS+ G SV
Sbjct: 172 NRQVYVGRFKFPEERAAEVRT---RDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESV 228
Query: 207 KIMRTDRGISKG 218
K++R G SKG
Sbjct: 229 KVIRDASGKSKG 240
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 154/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FS +G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEEATKAVDEM---NGRTVGSK--PLHVTLGQ 377
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 154/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FS +G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEEATKAVDEM---NGRTVGSK--PLHVTLGQ 377
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 136 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFV 195
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + +++VG I + DR + ++F N+YVKN+ + T
Sbjct: 196 HYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 255
Query: 117 EEILVEKFSEFGKITSLVISKDANGT-SKGFG-----------------------SKVLY 152
+E E F +FG +TS +++D + S+GFG + LY
Sbjct: 256 DEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLY 315
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R E+A Y+ +N V + +L++ F+ G+I+S
Sbjct: 316 VGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKLRELFTPFGSITS 375
Query: 206 VKIMR 210
K+MR
Sbjct: 376 AKVMR 380
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 46/234 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L S++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 65 YVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTIDGEKALEE 122
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 123 LNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNKALHDTFAAFGN 175
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D G SKG+G K ++V K +R
Sbjct: 176 ILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR---- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR-TDRGISKG 218
+++FE M+ +Y KNI E + E ++ F + G ++S + R TD S+G
Sbjct: 232 QSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRG 285
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + ++F KFGD+ S+ + + KS+G+GFV + E A A+++
Sbjct: 244 NIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDE 303
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L G + +LYVG ++ A RI++ S + NLYVKNLDDD+ ++ L
Sbjct: 304 LNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKL 363
Query: 121 VEKFSEFGKITSLVISKD 138
E F+ FG ITS + +D
Sbjct: 364 RELFTPFGSITSAKVMRD 381
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 155/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FS +G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + + T + M G + S P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEDATKAVDEM---NGRTVGSK--PLHVTLGQ 377
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 135/270 (50%), Gaps = 31/270 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +ID L+ F+ FG I S KV V G S+ YGFV
Sbjct: 101 MWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFV 160
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y + ESA +AIEK+ G + ++ V PF+R+ DR E + NLYV+N D EE L
Sbjct: 161 HYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRETE-EVYTNLYVRNFPADWDEEAL 219
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+ ++G+ITS+++ +D+ G F S L V Q
Sbjct: 220 RQFLEKYGEITSMMLKEDSKGRRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQ 279
Query: 158 KKAERKAILRAQFERM------RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
K +R+ +L+AQF + ++ + LY KN++D D+ L + F Q GTI+S K+M
Sbjct: 280 DKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVML 339
Query: 211 TDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
S+G +E T + M+ K
Sbjct: 340 DANNNSRGFGFVCFSNPQEATKAIAAMHLK 369
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 28/231 (12%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYS 63
P E ++ + +V +L + L+++F+ G + S +V S KS GY +V Y
Sbjct: 17 PMREGQVFSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYY 76
Query: 64 TPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
+ + A A+E L +G M P +R+ S N++VKNLD + +
Sbjct: 77 STQDAEAALENLNYIEIKGHPTRIMWSNRDPSLRK-------SGAGNIFVKNLDKSIDTK 129
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG--------------SKVLYVARAQKKAERKA 164
L + F+ FG I S ++ D+ G S+ +G KV + KK E
Sbjct: 130 SLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAP 189
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
LR Q + LY +N + DE L+Q+ + G I+S+ + +G
Sbjct: 190 FLRKQDRETEEVYTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKG 240
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 97 IQEGSSFNN--LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLYV 153
++EG F++ LYV +L D+TE +L E F+ G + S+ + +D+ T K G + V Y
Sbjct: 18 MREGQVFSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDS-VTRKSLGYAYVNYY 76
Query: 154 ARAQKKAERKAILRAQFE-------------RMRKERAE--LYKNINDEVDEIELKQYFS 198
+ +A + + + + +RK A KN++ +D L F+
Sbjct: 77 STQDAEAALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFA 136
Query: 199 QCGTISSVKIMRTDRGISK 217
GTI S K+ G S+
Sbjct: 137 HFGTILSCKVAVDSTGASR 155
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 136/244 (55%), Gaps = 36/244 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SGIGN F+KNL +IDN L +FS FG I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
++ L E FSE+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIM 209
K+M
Sbjct: 331 AKVM 334
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNN--------------LYVKNLDDDMTEEILV 121
G +++ LYVG ++ +R+ E +Y+KNLD+ + +E L
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLK 319
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + KGFG
Sbjct: 320 EEFSSFGSISRAKVMVEVE-QGKGFG 344
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQG 77
V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 78 ATVERMELYVG-PF----IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+L G PF + DR+++ S N+++KNLD + L FS FG I S
Sbjct: 81 -----FDLINGKPFRLMWSQPDDRLRK-SGIGNIFIKNLDKSIDNRALFYLFSAFGSILS 134
Query: 133 LVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQ 169
+ D NG SKG+ ++ +YV R + ER A +R
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT- 192
Query: 170 FERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R R ++ KN D++D+ +LK+ FS+ G SVK++R G SKG
Sbjct: 193 --RDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKG 240
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FGDI S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 199/456 (43%), Gaps = 92/456 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 132 MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG + + DR + ++F N+YVKNL ++
Sbjct: 192 HYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVD 251
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E F FG +TS+ + D G S+GFG + LYV
Sbjct: 252 NAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYV 311
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ +E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 312 GRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSA 371
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
++M D G SKG C +A+AQ K R S L
Sbjct: 372 RVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQI 431
Query: 235 ------RIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLF 288
R+ A G+ + P Y + + P+ R G P PP+P
Sbjct: 432 QARNQMRMQNAAAAAGMPGQF--MSPMFYGQQPGFF-PPNGRGGAQ-----GPFPPNPQM 483
Query: 289 LMA-----PDSVTQYRGAMMNGHANFPMPLM-LSNLQKPSYNYPISQPRAGQAAANNLTN 342
+M P Q+ A NG P+P+ + + +N P Q + A N
Sbjct: 484 MMPRGGQMPPPQGQWPRAGPNGQ---PVPVYGMPPVYGGEFNGPNGQRQQRGAYP---PN 537
Query: 343 GNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
N + +L++++ D++K ILG+ LYP +
Sbjct: 538 RNQKGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 69/279 (24%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L +++ L +IFS G + S +V KS GY +V + AIE+L
Sbjct: 61 YVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELN 120
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ V+ + P +RR + N+++KNL + + L + FS FG+I
Sbjct: 121 YSLVDGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPAIDNKALHDTFSAFGRIL 173
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + ++V + K +R+ +
Sbjct: 174 SCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRE----S 229
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------H 219
+FE M+ +Y KN+ EVD + ++ F G ++SV + G S+G H
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 220 CMAI--------------------AQTKRERTSYLRIMY 238
A+ AQ KRER L+ +Y
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 155/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDDHG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FSE+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ + + +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGHGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 198/453 (43%), Gaps = 86/453 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 132 MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG + + DR + ++F N+YVKNL ++
Sbjct: 192 HYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVD 251
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E F FG +TS+ + D G S+GFG + LYV
Sbjct: 252 NAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYV 311
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ +E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 312 GRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSA 371
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
++M D G SKG + E T + M + G P++ L QR Q
Sbjct: 372 RVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGK-----PLYVALAQRKDVRRSQ 426
Query: 263 VYQAPDFRHGGMIPN---------------------GFSPP----------PPSPLFLMA 291
+ Q R+ + N GF PP PP+P +M
Sbjct: 427 LEQQIQARNQMRMQNAAAAAGMPGQFMLPMFYGQQPGFFPPNGRGGAQGPFPPNPQMMMP 486
Query: 292 -----PDSVTQYRGAMMNGHANFPMPLM-LSNLQKPSYNYPISQPRAGQAAANNLTNGNH 345
P Q+ A NG P+P+ + + +N P Q + A N N
Sbjct: 487 RGGQMPPPQGQWPRAGPNGQ---PVPVYGMPPVYGGEFNGPNGQRQQRGAYP---PNRNQ 540
Query: 346 RAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+ +L++++ D++K ILG+ LYP +
Sbjct: 541 KGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 69/279 (24%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L +++ L +IFS G + S +V KS GY +V + AIE+L
Sbjct: 61 YVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELN 120
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ V+ + P +RR + N+++KNL + + L + FS FG+I
Sbjct: 121 YSLVDGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPAIDNKALHDTFSAFGRIL 173
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + ++V + K +R+ +
Sbjct: 174 SCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRE----S 229
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------H 219
+FE M+ +Y KN+ EVD + ++ F G ++SV + G S+G H
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 220 CMAI--------------------AQTKRERTSYLRIMY 238
A+ AQ KRER L+ +Y
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 146/272 (53%), Gaps = 37/272 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SGIGN F+KNL +IDN L +FS FG I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN DDM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
++ L E FSE+G S+ + +D++G SKGFG KVLY
Sbjct: 211 DDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G KG + + E T + M
Sbjct: 331 AKVM-VEVGQGKGFGVICFSSFEEATKAVDEM 361
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRVVGSK--PLHVTLGQ 377
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 155/293 (52%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN +DM
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDM 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E FS +G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +D+ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + + T + M G + S P+H TL Q
Sbjct: 331 AKVM-VEVGQGKGFGVVCFSSFEDATKAVDEM---NGRTVGSK--PLHVTLGQ 377
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 77 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 136 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 195
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 196 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 255
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 256 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 315
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 316 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 362
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 138/249 (55%), Gaps = 32/249 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL S+ID+ L FS FG+I S KV + G+S+GYG+V
Sbjct: 87 MWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y + ++A DAI K+ T+ E+YVG F+RR +R + S + NLYVKN D E L
Sbjct: 147 HYESEDAATDAINKINSMTICDKEVYVGHFVRRTERSGQ-SDWTNLYVKNFPADWDEATL 205
Query: 121 VEKF--------SEFGKIT-----SLVISKDA-NGTSKGFG---------SKVLYVARAQ 157
+ F S FG + + V + DA NG S+ G L+V RAQ
Sbjct: 206 RKAFEMFAAADGSAFGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQ 265
Query: 158 KKAERKAILRAQFERMRKERAELYKNINDEVDE-------IELKQYFSQCGTISSVKIMR 210
KK ER+ L+A+F+ + ER + Y+ +N V +L+++F++ GTI+S ++MR
Sbjct: 266 KKVERERELKAKFDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMR 325
Query: 211 TD-RGISKG 218
G S+G
Sbjct: 326 EPATGTSRG 334
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-LEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 60 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 118
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 119 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 178
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 179 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 238
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 239 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 298
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 299 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 345
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 123/237 (51%), Gaps = 42/237 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 133 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFV 192
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+ D+T
Sbjct: 193 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVT 252
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F ++G +TS +++D G S+GFG + LYV
Sbjct: 253 EDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYV 312
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
RAQKK ER+ LR +E R+ E +Q +CG+I+S K+MR
Sbjct: 313 GRAQKKHEREEELRKSYEAARRG---------------EGQQMNKECGSITSTKVMR 354
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTR--RSLGYAYVNYNATPDGEKALEE 119
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 120 LNYTIIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGN 172
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D G SKG+G K +YV K +R++
Sbjct: 173 ILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 230
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI +V E + +Q F + G ++S + R G S+G
Sbjct: 231 --KFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG 281
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 139/292 (47%), Gaps = 52/292 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KN+ +ID L+ FS +G I S KV + G+S+GYGFV
Sbjct: 115 MWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILSCKVATDETGRSRGYGFV 174
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI-----QEG--SSFNNLYVKNLDD 113
+ T +A AI G + +++V PF+RR++R+ ++G F NLYV+N +
Sbjct: 175 HFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSSTKLEDGVDEKFTNLYVRNFPE 234
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGF-------------------------GS 148
+ EEIL E FS FG+ITS+++ D G F G
Sbjct: 235 NWNEEILKENFSPFGEITSMMMKSDPLGRKFAFINYAENSMAKAAIETMNGKDFSIKSGD 294
Query: 149 KV-------------LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEV 188
K L V Q +A R A+L+A+++ M E Y KN++D +
Sbjct: 295 KSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSI 354
Query: 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
++ EL++ F G I+S K+M + G S G + + T + M+ K
Sbjct: 355 NDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLK 406
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 39/236 (16%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTP 65
+E +L + +V +L+ + L++IF+ G + S +V S KS GY +V Y
Sbjct: 33 NEGQLFPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNV 92
Query: 66 ESALDAIEKLQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
A A+E L+ G V M + P +R+ S N+++KN+D+ + + L
Sbjct: 93 NDARRALEALKYNEICGKQVRIMWSHRDPSLRK-------SGAGNVFIKNIDESIDTKAL 145
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+ FS +G+I S ++ D G S+G+ G+K ++VA
Sbjct: 146 YDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFV 205
Query: 158 KKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+++ER + + + + + ++ LY +N + +E LK+ FS G I+S+ +M++D
Sbjct: 206 RRSERVSSTKLE-DGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSM-MMKSD 259
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------SKVLYVARAQKK 159
LYV +L ++TE IL E F+ G + S+ + +D+ T K G V RA +
Sbjct: 43 LYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSI-TRKSLGYAYVNYHNVNDARRALEA 101
Query: 160 AERKAILRAQFERMRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ I Q M R KNI++ +D L FS G I S K+
Sbjct: 102 LKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILSCKVA 161
Query: 210 RTDRGISKGH 219
+ G S+G+
Sbjct: 162 TDETGRSRGY 171
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 135/249 (54%), Gaps = 33/249 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + AR +G N FVKNL +I + L IFSK+G I S KV + G+SKG+GFV
Sbjct: 91 MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA-GENGRSKGFGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Q+ + +SAL A L + +L+V F+++ +R F NLYVKNLD+ +TE+
Sbjct: 150 QFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTNLYVKNLDETITED 209
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVAR 155
L + FS G ++S+ I D G SK F GSK L+V +
Sbjct: 210 GLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGK 269
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQ+K+ER IL+ +++ + E LY KN+N ++D+ +LK+ FS G I SVK+
Sbjct: 270 AQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKV 329
Query: 209 MRTDRGISK 217
+ + G SK
Sbjct: 330 ICHNDGTSK 338
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 18/165 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL TI L +FS GD+ S +++ EGKSK +GFV + +P+ A A++ +
Sbjct: 196 NLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVM 255
Query: 76 QGATVERMELYVGPFIRRADRI----QEGSSFN----------NLYVKNLDDDMTEEILV 121
G+ + L+VG R+++R QE + NLYVKNL+ D+ ++ L
Sbjct: 256 NGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLK 315
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
E FS +GKI S+ + +GTSK FG +V A + KA++
Sbjct: 316 EVFSAYGKILSVKVICHNDGTSKQFG----FVCFASPEEANKALV 356
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL ID+ KL ++FS +G I S KV+ +G SK +GFV +++PE A A+ L
Sbjct: 299 NLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVAL 358
Query: 76 QG 77
G
Sbjct: 359 NG 360
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 148/302 (49%), Gaps = 64/302 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV-----------VS 49
MWS + R SG GN F+KNL IDN ++ FS FG+I S KV +
Sbjct: 122 MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAID 181
Query: 50 QEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNN 105
EG SKGYGFV + T E+A +AI+K+ G + +++VG F RA R +E F N
Sbjct: 182 DEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTN 241
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFG----------------- 147
+YVKN D +E L + F+++G ITS V++ D G SKGFG
Sbjct: 242 VYVKNFGDHYNKETLEKLFAKYGAITSCDVMTSD--GKSKGFGFVAFAQPEEAEAAVQAL 299
Query: 148 --SKV------LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
S V L+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+
Sbjct: 300 NDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEA 359
Query: 193 LKQYFSQCGTISSVK--------------IMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238
LK+ F G I+S K +M + G SKG + E T+ + M
Sbjct: 360 LKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMN 419
Query: 239 AK 240
+K
Sbjct: 420 SK 421
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 54/208 (25%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+K+G I S V+ S +GKSKG+GFV ++ PE A A++ L
Sbjct: 241 NVYVKNFGDHYNKETLEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQAL 299
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+ V+ ++L+V ++++R E + NLYVKNLD+ + +E
Sbjct: 300 NDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEA 359
Query: 120 LVEKFSEFGKITS--------------LVISKDANGTSKGFG------------------ 147
L ++F FG ITS + D NG SKGFG
Sbjct: 360 LKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMN 419
Query: 148 -----SKVLYVARAQKKAERKAILRAQF 170
SK LYVA AQ+K +R+A L +Q+
Sbjct: 420 SKMVCSKPLYVALAQRKEDRRAQLASQY 447
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E + + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEASKAVDEM---NGRIVGSK--PLHVTLGQ 377
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQG 77
V +L + L++ F G ++ +++ +S GYG+V + P A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 78 ATVERMELYVG-PF----IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+L G PF + DR+++ S N+++KNLD + L FS FG I S
Sbjct: 81 -----FDLINGKPFRLMWSQPDDRLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 133 LVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQ 169
+ D NG SKG+ ++ +YV R + ER A +R
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT- 192
Query: 170 FERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R R ++ KNI D++D+ +LK+ F + G SVK++R G SKG
Sbjct: 193 --RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 137/271 (50%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + G SK +GFV
Sbjct: 125 MWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGNSKCFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG + + DR + ++F N++VKNL + T
Sbjct: 185 HYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYT 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS +G ITS + KD G SKGFG + +YV
Sbjct: 245 DQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER LR Q+E + E+ Y KN++D +D +L+ F G I+S
Sbjct: 305 GRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEKLENEFKPFGNITSA 364
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
++M ++G SKG + E T + M
Sbjct: 365 RVMVDEQGKSKGFGFVCFSSPEEATKAITEM 395
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 115/279 (41%), Gaps = 69/279 (24%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++++ L +IFS G + S +V KS GY +V + + AIE L
Sbjct: 54 YVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLN 113
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ +E + P +RR EG N+++KNL + + L + FS FG+I
Sbjct: 114 YSLIEGRPCRIMWSQRDPSLRRNG---EG----NIFIKNLHPAIDNKALHDTFSAFGRIL 166
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + ++V + K +R+ +
Sbjct: 167 SCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRE----S 222
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------H 219
+FE M+ ++ KN+ E + ELK+ FS G I+S + + G SKG H
Sbjct: 223 KFEEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNH 282
Query: 220 CMAI--------------------AQTKRERTSYLRIMY 238
A+ AQ KRER LR Y
Sbjct: 283 NDAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQY 321
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ +D+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGEDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 138/270 (51%), Gaps = 34/270 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ +L IF KFG+I S KV+ + GKS+GYGFV
Sbjct: 95 MWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEILSCKVMDDESGKSRGYGFV 154
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ ++A AIEK+ G A ++ LYV FIRR R+ ++F N+Y+K L +
Sbjct: 155 HFKDDDAAKAAIEKMNGDKEHADADKAALYVANFIRRNARLAALVANFTNVYIKQLLPTV 214
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGF---------------------------GS 148
++++ + FS+FG ITS I KD NG + F G
Sbjct: 215 DKDVIEKFFSKFGGITSAAICKDKNGRAFAFCNFEKHDDAVKAIEASHDQEVEGVTQPGE 274
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
K LYV RAQ ++ER LR ++ + + LY +N + E E +L + F + G I S +
Sbjct: 275 K-LYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCR 333
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+M GIS+G + + + LR M
Sbjct: 334 VMTDANGISRGFGFVSFENADQANAALREM 363
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L I+ +L IF +G I + +V +++Q +S GYG+V Y SA
Sbjct: 20 VASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQ--RSLGYGYVNYDDVNSASK 77
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
A+E+L V E + ++ D S N++VKNL +++ L F +FG+I
Sbjct: 78 AMEELNFKRVG--EKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEI 135
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQK-------------KAERKAILRAQFERMRKER 177
S + D +G S+G+G A K A++ A+ A F R
Sbjct: 136 LSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALYVANFIRRNARL 195
Query: 178 AELYKNIND--------EVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L N + VD+ ++++FS+ G I+S I + G + C
Sbjct: 196 AALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGRAFAFC 246
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 109/202 (53%), Gaps = 25/202 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +I+ +L+ FS FG I S K+V+ + G+SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ E A AIEK+ + +YVG FI + +R + FNNLYVKN + E
Sbjct: 147 HFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNE 206
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L E FSEFG+I S + KD G SKGFG +VLY AR
Sbjct: 207 KLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCAR 266
Query: 156 AQKKAERKAILRAQFERMRKER 177
AQ+K ER+ L+ + E+ R ER
Sbjct: 267 AQRKEERQEELKQKIEKQRAER 288
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 43/257 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V +L + + L FS+ G + S++V + S GYG+V + P+ A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVLN 75
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P +R++ + N+++KNLD + ++ L + FS FG+I
Sbjct: 76 YEPLMGRPIRIMWSQRDPSLRKSGK-------GNIFIKNLDKSIEQKELYDTFSFFGRIL 128
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR- 167
S I D NG SKG+G +V+YV + K ERK+ R
Sbjct: 129 SCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARK 188
Query: 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
+F + KN E D +LK+ FS+ G I S +M+ + G SKG
Sbjct: 189 VKFNNL------YVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDP 242
Query: 228 RERTSYLRIMYAKQGPG 244
+ +R M+ K+ G
Sbjct: 243 DHAENAVRTMHGKEIEG 259
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 130/249 (52%), Gaps = 32/249 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + RLSG GN FVKNL +IDN +L +FS FG + S KVV G SKGYGFV
Sbjct: 17 MFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFV 76
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ + S A G + ++V PF+ R + E F N+YVKNL + T++ L
Sbjct: 77 QFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRR-QWDESRVFTNVYVKNLAETTTDDDL 135
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
F EFG+ITS V+ KD G S+ FG K L+V RAQ
Sbjct: 136 KMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQ 195
Query: 158 KKAERKAILRAQF--ERMRKER-----AELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
+K R L+ F E+++++ LY KN++ VD +L++ FS+ GTI S K+M
Sbjct: 196 RKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVM 255
Query: 210 RTDRGISKG 218
ISKG
Sbjct: 256 VHPNRISKG 264
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 95/196 (48%), Gaps = 38/196 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNLA T + L IF +FG+I S+ V+ +EGKS+ +GFV + E+A+ AI+K+
Sbjct: 120 NVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKM 179
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSF---------------NNLYVKNLDDDMTEEIL 120
G V+ EL+VG R+ +RIQ+ NLYVKNLD + L
Sbjct: 180 NGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKL 239
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
E FSEFG I S + N SKG G +K +YV+ AQ
Sbjct: 240 QELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQ 299
Query: 158 KKAERKAILRAQFERM 173
K E K L QF +
Sbjct: 300 CKEEHKLHLHTQFNNL 315
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 147/274 (53%), Gaps = 36/274 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG+GN FV +L ++IDN +L+ +F+ FG I S KVV S E KG+GFV
Sbjct: 93 MWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKVV-SDENGPKGHGFV 151
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+A AI+++ G+ V+ +++VG F R R +E + F N+YVKN D T
Sbjct: 152 HFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTT 211
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYV 153
+E L+E FS++G ++S+ I D +G SKG FG + +YV
Sbjct: 212 DEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYV 271
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
+RAQKK ER+ L+ + E +++ R Y KN+ + D+ L++ F+ GT++S
Sbjct: 272 SRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSA 331
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K++ G KG ++ E + M+ K
Sbjct: 332 KVI-VKGGRRKGFGFVSFSSREEAKKAVEEMHGK 364
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI---- 72
+V +L + L++ FS G I S +V +S GYG+V + PE A A+
Sbjct: 22 YVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMN 81
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ L G V M + P +RR S N++V +LD + + L + F+ FG I
Sbjct: 82 FDVLHGKPVRIMWCHRDPSLRR-------SGVGNVFVNHLDASIDNKELYDLFAGFGTIL 134
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFER--MRKE--R 177
S + D NG KG G A KA ERK + QF+R R+E R
Sbjct: 135 SCKVVSDENGP-KGHGFVHFETREAADKAIKEMNGSLVKERK-VFVGQFKRPNQREEERR 192
Query: 178 AEL-------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
A++ KN D + L + FSQ G +SSVKIM D G SKG
Sbjct: 193 AKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKG 240
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 122/238 (51%), Gaps = 32/238 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R+SG GN FVKNL +IDN +L +FS FG + S KV G SKGYGFV
Sbjct: 88 MFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFV 147
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ + S A G + ++V PF+ R + + F N+YVKNL + T+ L
Sbjct: 148 QFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRG-QWDKSRVFTNVYVKNLVETATDADL 206
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
F EFG+ITS V+ KD G S+ FG K L+V RAQ
Sbjct: 207 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 266
Query: 158 KKAERKAILRAQFE--------RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVK 207
+K R L+A+FE + RK KN++D VD +L++ FS+ GTI+S K
Sbjct: 267 RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCK 324
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 21 NLASTIDNLKLHQIFSKFG-DIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIE----- 73
+L S+++ L+ FS+F DI S KV + G S GYG+V ++ A A+E
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 74 KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
KL+G + M P R + R N++VKNLD+ + + L + FS FGK+ S
Sbjct: 79 KLKGKPMRIMFSERDPSNRMSGR-------GNVFVKNLDESIDNKQLCDMFSAFGKVLSC 131
Query: 134 VISKDANGTSKGFGSKVLY---------------VARAQKKAERKAILRAQFERMRKERA 178
+++DA+G SKG+G Y + R Q + R Q+++ R
Sbjct: 132 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTN 191
Query: 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ + + +LK+ F + G I+S +M+ G S+
Sbjct: 192 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSR 230
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 110 NLDDDMTEEILVEKFSEFG-KITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERKAI-- 165
+LD + E L KFSEF I+S+ + D N G S G+G V + +Q K + +
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGY-VNFNHSSQAKTAMEVLNY 77
Query: 166 -------LRAQF------ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+R F RM KN+++ +D +L FS G + S K+ R
Sbjct: 78 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA 137
Query: 213 RGISKGH 219
G+SKG+
Sbjct: 138 SGVSKGY 144
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 122/238 (51%), Gaps = 32/238 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R+SG GN FVKNL +IDN +L +FS FG + S KV G SKGYGFV
Sbjct: 17 MFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFV 76
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ + S A G + ++V PF+ R + + F N+YVKNL + T+ L
Sbjct: 77 QFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRG-QWDKSRVFTNVYVKNLVETATDADL 135
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
F EFG+ITS V+ KD G S+ FG K L+V RAQ
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 158 KKAERKAILRAQFE--------RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVK 207
+K R L+A+FE + RK KN++D VD +L++ FS+ GTI+S K
Sbjct: 196 RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCK 253
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLY------------ 152
N++VKNLD+ + + L + FS FGK+ S +++DA+G SKG+G Y
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 153 ---VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ R Q + R Q+++ R KN+ + + +LK+ F + G I+S +M
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 210 RTDRGISK 217
+ G S+
Sbjct: 152 KDGEGKSR 159
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 137/270 (50%), Gaps = 34/270 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ LH IF+KFG I S KV+ +EGKS+GYGFV
Sbjct: 99 MWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFV 158
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ SA DAI K+ G A+ ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 159 HFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGF---------------------------GS 148
++E++ + F++FG ITS KD +G F G
Sbjct: 219 SKEVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
K LYV RAQ ++ER LR ++ + + LY +N + E +L + F + G + S +
Sbjct: 279 K-LYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCR 337
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+M ++ G S+G E + LR M
Sbjct: 338 VMVSESGASRGFGFVSFSNADEANAALREM 367
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K + T+ + + F+KFG I S+ + G+ + F + + A
Sbjct: 201 ALVANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDA 258
Query: 69 LDAIEKLQ-----GATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ A+E + G T +LYV R++R+ Q S NNLYV+N D +
Sbjct: 259 VKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEF 318
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
T L+E F E+G + S + +G S+GFG K L
Sbjct: 319 TGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLI 378
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R +LR QF++
Sbjct: 379 VNIAQRRDQRYTMLRLQFQQ 398
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +L + I+ +L ++F FG I + +V +++Q +S GYG+V + ESA
Sbjct: 24 IASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHESAEK 81
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
AIE + V + V ++ D S N++VKNL+ D+ + L + F++FG I
Sbjct: 82 AIESMNFKRVG--DKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSI 139
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + +D G S+G+G K LYVA ++ R
Sbjct: 140 LSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARL 199
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + K + V + ++++F++ G I+S + G C
Sbjct: 200 AALVANFTNV------YIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSGRVFAFC 250
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 133/492 (27%), Positives = 207/492 (42%), Gaps = 141/492 (28%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T E+A +I+++ G + KN +DMT++ L
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGK-------------------------KNFGEDMTDDKL 179
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
E F ++G ITS + +G S+GFG K +YV RA
Sbjct: 180 KEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRA 239
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S K+M
Sbjct: 240 QKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM 299
Query: 210 RTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMYAKQ 241
+ G SKG C +A+AQ K +R ++L Y ++
Sbjct: 300 -MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 358
Query: 242 -------------GPGLASTIF-PV--HPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPS 285
PG A F P P + Q+ Q PN P +
Sbjct: 359 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 418
Query: 286 PL---------FLMAPDSVTQYRGAMMNGHANFPM----PLMLSNLQKPSYNYPISQPRA 332
F AP + T G M N + P+ + +N+Q N ++ P
Sbjct: 419 GSSGFATMQGPFRAAPRAPTAQAGTMRNTLSARPITGQQAVGGANMQ----NRSMAGPAV 474
Query: 333 GQAAANNLTNGNHRAAASN----------------------ENLSSMLVATS-PDERKDI 369
G +A + +N + + N E L++ ++A + P E+K +
Sbjct: 475 GVSAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQM 534
Query: 370 LGQRLYPLVKKL 381
LG+RL+PL++ +
Sbjct: 535 LGERLFPLIQCM 546
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 153/348 (43%), Gaps = 79/348 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T E+A +I+K+ G + KN +DMT++ L
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGK-------------------------KNFGEDMTDDKL 179
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
E F ++G ITS + +G S+GFG K +YV RA
Sbjct: 180 KEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRA 239
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+ L+ +FE+++ ER Y KN++D +++ L++ F+ GTI+S K+M
Sbjct: 240 QKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVM 299
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA--LQVYQAP 267
D G SKG E T + M G P++ L QR + + A
Sbjct: 300 MED-GRSKGFGFVCFSAPEEATKAVTEMN-----GRIIVTKPLYVALAQRKEDRKAHLAS 353
Query: 268 DF----------RHGGMIPNG-----FSPPPPSPLFLMAPDSVTQYRG 300
+ + G M P G F P P P P + Q R
Sbjct: 354 QYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRA 401
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 32/269 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ LH IF+KFG I S KV+ +EGKS+GYGFV
Sbjct: 99 MWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFV 158
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ SA DAI K+ G A+ ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 159 HFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS--------------------------K 149
++++ + F++FG ITS KD +G F + +
Sbjct: 219 NKDVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
LYV RAQ ++ER LR ++ + + LY +N + E +L + F + G + S ++
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIM 237
M ++ G+S+G E + LR M
Sbjct: 339 MVSESGVSRGFGFVSFSNADEANAALREM 367
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K + T++ + + F+KFG I S+ + G+ + F + + A
Sbjct: 201 ALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDA 258
Query: 69 LDAIEKLQ-----GATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ A+E + G T +LYV R++R+ Q + NNLYV+N D +
Sbjct: 259 VKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEF 318
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
T L+E F E+G++ S + +G S+GFG K L
Sbjct: 319 TGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLI 378
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R +LR QF++
Sbjct: 379 VNIAQRRDQRYTMLRLQFQQ 398
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +L +TI+ +L ++F FG I + +V +++Q +S GYG+V + +SA
Sbjct: 24 IASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEK 81
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
AIE + V + V ++ D S N++VKNL+ D+ + L + F++FG I
Sbjct: 82 AIESMNFKRVG--DKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSI 139
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + +D G S+G+G K LYVA ++ R
Sbjct: 140 LSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARL 199
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + K + V++ ++++F++ G I+S + G C
Sbjct: 200 AALVANFTNV------YIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSGRVFAFC 250
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 137/270 (50%), Gaps = 34/270 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ LH IF+KFG I S KV+ +EGKS+GYGFV
Sbjct: 99 MWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFV 158
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ SA DAI K+ G A+ ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 159 HFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGF---------------------------GS 148
++++ + F++FG ITS KD +G F G
Sbjct: 219 NKDVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
K LYV RAQ ++ER LR ++ + + LY +N + E +L + F + G + S +
Sbjct: 279 K-LYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCR 337
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+M ++ G+S+G E + LR M
Sbjct: 338 VMVSESGVSRGFGFVSFSNADEANAALREM 367
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K + T++ + + F+KFG I S+ + G+ + F + + A
Sbjct: 201 ALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDA 258
Query: 69 LDAIEKLQ-----GATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ A+E + G T +LYV R++R+ Q + NNLYV+N D +
Sbjct: 259 VKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEF 318
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
T L+E F E+G++ S + +G S+GFG K L
Sbjct: 319 TGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLI 378
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R I+R QF++
Sbjct: 379 VNIAQRRDQRYTIVRLQFQQ 398
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +L +TI+ +L ++F FG I + +V +++Q +S GYG+V + +SA
Sbjct: 24 IASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEK 81
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
AIE + V + V ++ D S N++VKNL+ D+ + L + F++FG I
Sbjct: 82 AIESMNFKRVG--DKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSI 139
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + +D G S+G+G K LYVA ++ R
Sbjct: 140 LSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARL 199
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + + ++ +N +V ++++F++ G I+S + G C
Sbjct: 200 AALVANFTNVYIK--QVLPTVNKDV----IEKFFAKFGGITSAAACKDKSGRVFAFC 250
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 135/269 (50%), Gaps = 32/269 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ LH IF+KFG I S KV+ +EGKS+GYGFV
Sbjct: 99 MWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFV 158
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ SA DAI K+ G A+ ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 159 HFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS--------------------------K 149
+E++ F++FG ITS KD +G F + +
Sbjct: 219 NKEVIENFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
LYV RAQ ++ER LR ++ + + LY +N + E +L + F + G + S ++
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRV 338
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIM 237
M ++ G S+G E + LR M
Sbjct: 339 MMSESGASRGFGFVSFSNADEANAALREM 367
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K + T++ + F+KFG I S+ + G+ + F + + A
Sbjct: 201 ALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDA 258
Query: 69 LDAIEKLQ-----GATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ A+E + G T +LYV R++R+ Q S NNLYV+N D +
Sbjct: 259 VKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEF 318
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
T L+E F E+G + S + +G S+GFG K L
Sbjct: 319 TGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLI 378
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R +LR QF++
Sbjct: 379 VNIAQRRDQRYTMLRLQFQQ 398
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +L + I+ +L ++F FG I + +V +++Q +S GYG+V + SA
Sbjct: 24 IASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHHSAER 81
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
AIE + V + V ++ D S N++VKNL+ D+ + L + F++FG I
Sbjct: 82 AIESMNFRRVG--DKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSI 139
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + +D G S+G+G K LYVA ++ R
Sbjct: 140 LSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARL 199
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + + ++ +N EV ++ +F++ G I+S + G C
Sbjct: 200 AALVANFTNVYIK--QVLPTVNKEV----IENFFAKFGGITSAAACKDKSGRVFAFC 250
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 32/269 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ LH IF+KFG I S KV+ +EGKS+GYGFV
Sbjct: 99 MWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFV 158
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ SA DAI K+ G A+ ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 159 HFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS--------------------------K 149
+E++ + F++FG ITS KD +G F + +
Sbjct: 219 NKEVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
LYV RAQ ++ER LR ++ + + LY +N + E +L + F + G + S ++
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIM 237
M ++ G S+G E + LR M
Sbjct: 339 MVSESGASRGFGFVSFSNADEANAALREM 367
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K + T++ + + F+KFG I S+ + G+ + F + + A
Sbjct: 201 ALVANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDA 258
Query: 69 LDAIEKLQ-----GATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ A+E + G T +LYV R++R+ Q S NNLYV+N D +
Sbjct: 259 VKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEF 318
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
T L+E F E+G++ S + +G S+GFG K L
Sbjct: 319 TGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLI 378
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R +LR QF++
Sbjct: 379 VNIAQRRDQRYTMLRLQFQQ 398
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +L + I+ +L ++F FG I + +V +++Q +S GYG+V + +SA
Sbjct: 24 IASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEK 81
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
AIE + V + V ++ D S N++VKNL+ D+ + L + F++FG I
Sbjct: 82 AIESMNFKRVG--DKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSI 139
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + +D G S+G+G K LYVA ++ R
Sbjct: 140 LSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARL 199
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + + ++ +N EV ++++F++ G I+S + G C
Sbjct: 200 AALVANFTNVYIK--QVLPTVNKEV----IEKFFAKFGGITSAAACKDKSGRVFAFC 250
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 191/421 (45%), Gaps = 51/421 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ +L IF KFG+I S KV+ + G S+GYGFV
Sbjct: 95 MWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEILSCKVMDDESGNSRGYGFV 154
Query: 61 QYSTPESALDAIEKLQGAT----VERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ +A AIE + G T ++ LYV FIRR R+ ++F N+Y+K + +
Sbjct: 155 HFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARLAALVANFTNVYIKQILPTV 214
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS--------------------------K 149
+ I+ + FS+FG ITS I KD NG + F + +
Sbjct: 215 DKAIIEKFFSKFGGITSAAICKDKNGRAFAFCNFEKHDDAVKAIEEFHDHEVEGVTQPGE 274
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
LYV RAQ ++ER LR ++ + + LY +N + E E +L + F + G I S ++
Sbjct: 275 KLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLNELFKEYGVIRSCRV 334
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPD 268
M G+S+G + + + LR M + G P+ + QR Q +
Sbjct: 335 MTDANGVSRGFGFVSFENADQANAALREMSGRMLNGK-----PLVVNIAQRRDQRFTMLR 389
Query: 269 FRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMN--GHANFP-MPLMLSNLQKPS-YN 324
+ + P P + P + Q R + GH P +P+M + + +N
Sbjct: 390 LQLQQRLQMMMRQIHPPPFGM--PRQMPQRRRGRQHPRGHDQMPSLPVMPPVIPRNDMFN 447
Query: 325 YP----ISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVKK 380
P + PR QA+ + + E+L +M + +E++ LG RLY V +
Sbjct: 448 TPSMGVSAAPRTPQASPATAPDTPPLPPITAEDLQNMTM----EEQRAALGDRLYIKVYE 503
Query: 381 L 381
L
Sbjct: 504 L 504
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 40/237 (16%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L I +L +IF +G I + +V +++Q +S GYG+V Y SA
Sbjct: 20 VASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQ--RSLGYGYVNYDNANSATK 77
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
A+E++ V E + ++ D S N++VKNL ++ L F +FG+I
Sbjct: 78 AMEEMNFKRVG--EKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEI 135
Query: 131 TSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAERK 163
S + D +G S+G+G LYVA ++ R
Sbjct: 136 LSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARL 195
Query: 164 AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + K I VD+ ++++FS+ G I+S I + G + C
Sbjct: 196 AALVANFTNV------YIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRAFAFC 246
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 186/430 (43%), Gaps = 104/430 (24%)
Query: 46 VVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GS 101
VV E S+G+GFV + T E+A AI + G + +++VG F R +R E
Sbjct: 114 AVVCDENGSRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAL 173
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF--------------- 146
F N+YVKN ++D+ ++ L E FSEFGK S+ + D NG S+GF
Sbjct: 174 EFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAV 233
Query: 147 --------GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEI 191
G +VLYV RAQK+ ER+ L+ +FE+M++ER Y KN++D +D+
Sbjct: 234 NSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDDE 293
Query: 192 ELKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAI 223
+L++ FS G I+S K+M T+ G SKG C +A+
Sbjct: 294 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 352
Query: 224 AQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP 283
AQ K ER + L Y ++ L + PV P L R P+ +P
Sbjct: 353 AQRKEERKAILTNQYMQRISVLRNINGPVFPQPTNYFLPAIPQSPTRASFYSPSTMAPIR 412
Query: 284 PSPLFL-MAPDSVTQY--------RGAMMN----GHANFPMPLMLSNLQK---------- 320
P+P + +P S+ + R + N A+ +P ++Q+
Sbjct: 413 PAPRWTSYSPRSLCAFVVFLPATPRRSTSNISTVRQASTQVPRAGPHMQRVVNIGTQTMG 472
Query: 321 -----------PSYNYPISQPRAGQAAANNL-TNGNHRAAASNENLSSMLVATSPDERKD 368
P Y Y + P A Q + G A SML + P E+K
Sbjct: 473 TGCPGSPGQAIPQYKYSSAMPNAHQVMERAVHIQGQEPLTA------SMLASAPPQEQKQ 526
Query: 369 ILGQRLYPLV 378
+LG RLYPL+
Sbjct: 527 MLGDRLYPLI 536
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 106/217 (48%), Gaps = 42/217 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKN +D+ L ++FS+FG S KV+V + G S+G+GFV + E A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G + LYVG +R +R E F NLYVKNLDD
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS +G ITS + + G SKGFG +K L
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELYKNINDEV 188
YVA AQ+K ERKAIL Q+ +R + +NIN V
Sbjct: 349 YVALAQRKEERKAILTNQY----MQRISVLRNINGPV 381
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 57/268 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T E+A +I+++ G + KN +DMT++ L
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGK-------------------------KNFGEDMTDDKL 179
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARA 156
+ F ++G ITS + +G S+GFG K +YV RA
Sbjct: 180 KDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRA 239
Query: 157 QKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIM 209
QKKAER+ L+ +FE+++ ER Y KN++D +D+ L++ F+ GTI+S K+M
Sbjct: 240 QKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM 299
Query: 210 RTDRGISKGHCMAIAQTKRERTSYLRIM 237
+ G SKG E T + M
Sbjct: 300 -MEEGRSKGFGFVCFSAPEEATKAVTEM 326
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G+SKG+
Sbjct: 129 KVAQDESGVSKGY 141
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 173/389 (44%), Gaps = 83/389 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL T+DN L+ FS FG+I S KV G+SKGYG+V
Sbjct: 116 MWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y SA AI K+ G + +++VG F+RR +R + + + NLYVK L + L
Sbjct: 176 HYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNRAGQ-ADWTNLYVKGLPSSWDDAKL 234
Query: 121 VEKFSEFGKITSL---VISKDANG------------TSKGF------------------- 146
E+F + G +TS V ++ G S+GF
Sbjct: 235 REEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALN 294
Query: 147 --------GSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEI 191
G+ LY ARAQKK+ER L+++ ++++ ER + KN+++ V E
Sbjct: 295 NAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTED 354
Query: 192 ELKQYFSQCGTISSVKIM--RTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTI 249
+++ F+ GTI+S ++M ++ SKG E T + M K L +
Sbjct: 355 AMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKM---LLNK- 410
Query: 250 FPVHPTLYQ----RALQVYQAPDFRHGGMIPNGFSPPPPS------PLFLMA-PDSVTQY 298
P++ L Q R Q+ R GGM P G P + P ++ A P Q
Sbjct: 411 -PIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYGMPYWMGAQPGMPQQP 469
Query: 299 RGAMM---------------NGHANFPMP 312
R MM G N+PMP
Sbjct: 470 RQFMMPQMMPRGPRGPMPAYGGRGNYPMP 498
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 135/270 (50%), Gaps = 33/270 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL + +D+ +L IF KFGDI S KV+ +EGKS+GYGFV
Sbjct: 103 MWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFV 162
Query: 61 QYSTPESALDAIEKLQGA-----TVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDD 114
+ +A +AIE + G ++M LYV FIRR R+ ++F N+Y+K +
Sbjct: 163 HFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPT 222
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGS-------------------------- 148
+ +E++ + FS+FG ITS KD NG F +
Sbjct: 223 VDKEVIEKFFSKFGGITSSATCKDKNGRVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPG 282
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+ LYV RAQ ++ER LR ++ + + LY +N + E E L + F + G I S +
Sbjct: 283 EKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCR 342
Query: 208 IMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+M G S+G + + + LR M
Sbjct: 343 VMTDANGNSRGFGFVSFENADQANAALREM 372
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 38/198 (19%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
++ N ++K + T+D + + FSKFG I SS + G+ + F + E A+
Sbjct: 208 VANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNGRV--FAFCNFEKHEDAVK 265
Query: 71 AIEK-----LQGATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDMTE 117
AIE + G +LYV R++R+ Q + NNLYV+N D + TE
Sbjct: 266 AIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTE 325
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E L E F E+G I S + DANG S+GFG K L V
Sbjct: 326 ENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVN 385
Query: 155 RAQKKAERKAILRAQFER 172
AQ++ +R +LR QF++
Sbjct: 386 IAQRRDQRFMMLRLQFQQ 403
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 41/238 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L + L ++F FG I + +V +++Q +S GYG+V +++ +SA
Sbjct: 28 VASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFNSHDSAAK 85
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
A+E L V + + ++ D S N++VKNL +++ L F +FG I
Sbjct: 86 AMEALNFKRVGDKCMRI--MWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDI 143
Query: 131 TSLVISKDANGTSKGFG----------------------------SKVLYVARAQKKAER 162
S + +D G S+G+G LYVA ++ R
Sbjct: 144 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNAR 203
Query: 163 KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + K + VD+ ++++FS+ G I+S + G C
Sbjct: 204 LATLVANFTNV------YIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNGRVFAFC 255
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 120/231 (51%), Gaps = 36/231 (15%)
Query: 46 VVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GS 101
V +E SKGYGFV + T ESA AIEK+ G +E ++YVG F R R++E
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-------------- 147
F N+Y+KN D++ +E L + FS+FGKITS + DA+G SKGFG
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 148 -----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
+ LYV RAQKK ER A L+ ++E+ + ER + Y KN++D V+
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
+ LKQ F G I+S K+M D G SKG + E T + M K
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 231
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 105/209 (50%), Gaps = 48/209 (22%)
Query: 9 ARLSGIG-------NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
ARL +G N ++KN A +D L ++FSKFG I S+ V+V +GKSKG+GFV
Sbjct: 50 ARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVA 109
Query: 62 YSTPESALDAIEKLQGATVERME--LYV----------GPFIRR-----ADRIQEGSSFN 104
+ PE A A+ ++ + E LYV RR +R+Q
Sbjct: 110 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGV- 168
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG----------------- 147
NLYVKNLDD + ++IL + F +GKITS + D NG SKGFG
Sbjct: 169 NLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEM 228
Query: 148 ------SKVLYVARAQKKAERKAILRAQF 170
+K LYVA AQ+K +RKA L +Q+
Sbjct: 229 NGKMMCTKPLYVALAQRKEDRKAQLASQY 257
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 33/251 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL + +D+ +L IF KFGDI S KV+ +EGKS+GYGFV
Sbjct: 96 MWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFV 155
Query: 61 QYSTPESALDAIEKLQG-----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDD 114
+ +A +AIE + G ++M LYV FIRR R+ ++F N+Y+K +
Sbjct: 156 HFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPT 215
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFGS-------------------------- 148
+ +E++ + FS FG ITS KD NG F +
Sbjct: 216 VDKEVIEKFFSRFGGITSSATCKDKNGRVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPG 275
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVK 207
+ LYV RAQ ++ER LR ++ + + LY +N + E E L + F + G I S +
Sbjct: 276 EKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCR 335
Query: 208 IMRTDRGISKG 218
+M G S+G
Sbjct: 336 VMTDANGNSRG 346
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 38/198 (19%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
++ N ++K + T+D + + FS+FG I SS + G+ + F + E A+
Sbjct: 201 VANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNGRV--FAFCNFEKHEDAVK 258
Query: 71 AIEK-----LQGATVERMELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDMTE 117
AIE + G +LYV R++R+ Q + NNLYV+N D + TE
Sbjct: 259 AIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTE 318
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E L E F E+G I S + DANG S+GFG K L V
Sbjct: 319 ENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVN 378
Query: 155 RAQKKAERKAILRAQFER 172
AQ++ +R +LR QF++
Sbjct: 379 IAQRRDQRFMMLRLQFQQ 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L + L ++F FG I + +V +++Q +S GYG++ ++ +SA
Sbjct: 21 VASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQ--RSLGYGYINFNNHDSAAK 78
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
A+E L V + + ++ D S N++VKNL +++ L F +FG I
Sbjct: 79 AMEALNFKRVGDKCMRI--MWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDI 136
Query: 131 TSLVISKDANGTSKGFG----------------------------SKVLYVARAQKKAER 162
S + +D G S+G+G LYVA ++ R
Sbjct: 137 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANFIRRNAR 196
Query: 163 KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
A L A F + K + VD+ ++++FS+ G I+S + G C
Sbjct: 197 LATLVANFTNV------YIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNGRVFAFC 248
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + +R SG GN F+KNL +IDN L+ F FG+I S K+ G+S+GYGFV
Sbjct: 109 MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
Q+ ESA AI+KL G + +++VGPF+R+ DR + F+N+YVKNL D +T++
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG 147
L E F ++G ITS V+ +D++G S+ FG
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFG 257
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ + +L +FS+ G + S +V KS GY +V Y+ A A+E L
Sbjct: 38 YVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLN 97
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G + M P R+ S N+++KNLD + + L + F FG I
Sbjct: 98 FTPINGKPIRIMYSNRDPSSRK-------SGTGNIFIKNLDKSIDNKALYDTFCAFGNIL 150
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAEL-- 180
S I+ D +G S+G+G + + A K + F R +++R +
Sbjct: 151 SCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR-KQDRENVSS 209
Query: 181 --------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN++D V + ELK+ F + GTI+S +MR G S+
Sbjct: 210 NIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSR 254
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ T+ + +L ++F K+G I S+ V+ +GKS+ +GFV + ++A A+++L
Sbjct: 215 NVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQEL 274
Query: 76 QGATV 80
V
Sbjct: 275 NDGVV 279
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 28/209 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYK 182
RAQK+ ER+ L+ +FE+M+++R Y+
Sbjct: 264 GRAQKRMERQNELKRRFEQMKQDRLRRYQ 292
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E L+G + M P +R+ S N+++KNL+D + + L + FS F
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRK-------SGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAILRAQFERMRKER 177
G I S ++ D +G S+GFG A ++A +RK + F+ R+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV-GHFKSRRERE 180
Query: 178 AEL-----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
AEL KN+ +VDE L+ FSQ G + SVK+MR + G S+
Sbjct: 181 AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR 231
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRGISKG 218
I S K+ + G S+G
Sbjct: 124 NILSCKVACDEHG-SRG 139
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 200/442 (45%), Gaps = 71/442 (16%)
Query: 1 MWSTPNSEARL---SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGY 57
MWS + R +G N +VKNL S+I + L ++F FG I S KVV + G+SKG+
Sbjct: 95 MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGF 153
Query: 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDM 115
GFVQ+ T +SA+ A L G+ V +L+V FI + +R + N+YVKNL + +
Sbjct: 154 GFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETV 213
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLY 152
T++ L FS++G ++S+V+ +D G S+GF GSK L+
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLF 273
Query: 153 VARAQKKAERKAILRAQFE-------RMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
V +A KK ER+ +L+ +F MR + LY KN+++ ++E L++ F G I
Sbjct: 274 VGKALKKDERREMLKQKFSDNFIAKPNMR--WSNLYVKNLSESMNETRLREIFGCYGQIV 331
Query: 205 SVKIMRTDRGISKGH---CMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRAL 261
S K+M + G SKG C + + ++ YL P + + +R
Sbjct: 332 SAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKP-IVVRVAERKEDRIKRLQ 390
Query: 262 QVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ---------YRG---AMMNGHANF 309
Q +QA R P+ SP P ++ + Q Y G M+GH N
Sbjct: 391 QYFQAQP-RQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQMSGHQNI 449
Query: 310 P-------MPLMLSNLQKPSYNYPISQPRAGQAAANNL-----TNGNHRAAASNENLSSM 357
+PL Y +P + P A + A L N N AA ++ +S
Sbjct: 450 TTYVPAGKVPLKERRSMHLVYKHP-AYPVAKRGAKQTLVFKGEVNRNLEAATCSKATTSE 508
Query: 358 LVATSPDERKDILGQRLYPLVK 379
+ER+ L +L P VK
Sbjct: 509 --ENRKEERRLTLSGKLSPEVK 528
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 139/263 (52%), Gaps = 44/263 (16%)
Query: 35 FSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94
FS FG+I S KV V+ G+SKGYGFV + T E+A+ AIEKL G + +++VG F R
Sbjct: 104 FSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRG 163
Query: 95 DRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--- 147
+R++E F N+++KNL + + L E F E G + S+ ++ D NG S+ FG
Sbjct: 164 ERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVS 223
Query: 148 --------------------SKVLYVARAQKKAERKAILRAQFERMRKERAELY------ 181
K ++V RAQKKAER+A L+ +FE+++ ER + Y
Sbjct: 224 FETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLY 283
Query: 182 -KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI----SKGHCMAIAQTKRERTSYLRI 236
KN++D + + L+++F+ G I+S K+M TD + SKG + E T +
Sbjct: 284 VKNLDDSITDDILREHFAPYGNITSSKVM-TDTDVEGTRSKGFGFVCFTSAEEATKAVTE 342
Query: 237 MYAKQGPGLASTIFPVHPTLYQR 259
M G +AS P++ L QR
Sbjct: 343 M---NGRIIASK--PLYVALAQR 360
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 40/201 (19%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R N F+KNL + D+ KL ++F + G + S + + GKS+ +GFV + T E A
Sbjct: 172 RAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAE 231
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDM 115
+EKL E +++VG ++A+R E F NLYVKNLDD +
Sbjct: 232 KVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSI 291
Query: 116 TEEILVEKFSEFGKITS--LVISKDANGT-SKGFG-----------------------SK 149
T++IL E F+ +G ITS ++ D GT SKGFG SK
Sbjct: 292 TDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASK 351
Query: 150 VLYVARAQKKAERKAILRAQF 170
LYVA AQ+K ERKA L+ Q+
Sbjct: 352 PLYVALAQRKDERKAHLQQQY 372
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 44/228 (19%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L L+ FS+ G + S +V +S GY +V + PE A AI
Sbjct: 10 MASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAI 69
Query: 73 EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
+ + ++ + A I ++ L T + FS FG I S
Sbjct: 70 DTMN---------FIQLSVNLASAISSSKTWTRL--------STTKCCTIPFSAFGNILS 112
Query: 133 LVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQ 169
++ + G SKG+G K ++V R + + ER +R
Sbjct: 113 CKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGER---VREY 169
Query: 170 FERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+R ++ KN+ E D+ +L + F + G++ SV + + G S+
Sbjct: 170 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSR 217
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL TIDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G+ITS+++ D
Sbjct: 210 KELFSPYGEITSMIVKSD 227
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 120/275 (43%), Gaps = 55/275 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN T+ L ++FS +G+I S ++V + K++ + F+ YS +SA +A+E L
Sbjct: 194 NLYVKNFPDTVTEAHLKELFSPYGEITS--MIVKSDNKNRKFCFINYSDADSARNAMENL 251
Query: 76 QGATVE---RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
G + +++ P A++ +S N +N T E EK ++ T+
Sbjct: 252 NGKKITEDGKIDHNYDPKKEEAEKAANENSNNTTSEENA---ATSETPAEKKTDSESATN 308
Query: 133 --LVISKD---ANGT------------------------------SKGFGS-----KVLY 152
+D ANGT SK G +LY
Sbjct: 309 KDATTGEDQTSANGTTTTVTSTTDAKTEEATNDSTANAATAEKKDSKKSGESTETPNILY 368
Query: 153 VARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISS 205
V Q +A R A+L+A+F+ + E LY KN++D +D+ LK+ F GTI+S
Sbjct: 369 VGPHQSRARRHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITS 428
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M+ D+ SKG T E + M+ K
Sbjct: 429 AKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLK 463
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQY---STPESALDAIE 73
+V +L+ + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E LK+ FS G I+S+ I+++D
Sbjct: 191 KFTNL------YVKNFPDTVTEAHLKELFSPYGEITSM-IVKSD 227
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 2 WSTPNSEARLSGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
+ T N+E+R G N ++KNL ++D+ L ++F +G I S+KV+ + +SKG+GFV
Sbjct: 386 FDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFV 445
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI 97
+ T E A A+ ++ + LYVG +R R+
Sbjct: 446 CFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRL 482
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 60/138 (43%), Gaps = 38/138 (27%)
Query: 85 LYVGPFIRRADR---------IQEGSSFN-----NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R S N NLY+KNLDD M ++ L E F +G I
Sbjct: 367 LYVGPHQSRARRHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTI 426
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + KD SKGFG K LYV A+K+ +R + L+
Sbjct: 427 TSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 486
Query: 168 AQFERMRKERAELYKNIN 185
+F RM R + ++N
Sbjct: 487 QRF-RMHPIRHHMNNSLN 503
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L +D+TE +L E F+ G + S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKNY 146
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 87/138 (63%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVGPFI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ F+ +G+ITS+++ D
Sbjct: 210 RQLFNPYGEITSMIVKMD 227
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E L+Q F+ G I+S+ I++ D
Sbjct: 191 KFTNL------YVKNFPDSVTETHLRQLFNPYGEITSM-IVKMD 227
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID++ L ++F FG I S+KV+ ++ +SKG+GFV +++ E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 511 HLKIINGKPLYVGLAEKREQRL 532
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 150 VLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGT 202
+LYV Q +A R AIL+A+F+ + E LY KN++D +D+I L++ F GT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
I+S K+MR ++ SKG ++ E + M+ K
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLK 513
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 60/138 (43%), Gaps = 38/138 (27%)
Query: 85 LYVGPFIRRADR--IQEGSSFN------------NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R I + N NLY+KNLDD + + +L E F FG I
Sbjct: 417 LYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTI 476
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + +D SKGFG K LYV A+K+ +R + L+
Sbjct: 477 TSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Query: 168 AQFERMRKERAELYKNIN 185
+F RM R + +N
Sbjct: 537 QRF-RMHPIRHHMNNPLN 553
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L Q+F+ +G+I S ++V + K++ + F+ Y+ ESA +A++ L
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMDNL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L++D+TE +L E F+ G ++S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKSY 146
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/445 (27%), Positives = 189/445 (42%), Gaps = 111/445 (24%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSS 102
VV E KGYGFV + T E+A AIEK+ G + +++VGPF R +R E
Sbjct: 98 VVCDENGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGARAKE 157
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 158 FTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 217
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
K +YV RAQKK ER+ L+ +FE+M+++R Y KN++D +D+
Sbjct: 218 VMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIA 224
L++ FS GTI+S K+M + G SKG C +A+A
Sbjct: 278 LRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 225 QTKRERTSYLRIMYAKQGPG-------LASTIFPVHPTLY-----------------QRA 260
Q K ER ++L +Y ++ L + P P+ Y ++
Sbjct: 337 QRKEERQAHLTNLYMQRMASVRAVPNPLINPYQPAPPSAYFMAAIPQTQNRAAYYPPRQI 396
Query: 261 LQVYQAPDFRHGGMIPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGH 306
Q+ +P + G P+ F +P PP P P ++ R A +
Sbjct: 397 AQLRPSPRWTAQGARPHPFQNMPGAIHPAAPRPPFSTMRPASSQVPRVMSTQRVADTSTQ 456
Query: 307 ANFPMPLMLSNLQKPS------YNYPIS--QPRAGQAAANNLTNGNHRAAASNEN--LSS 356
P P + P+ Y Y + P+ A +T + +S
Sbjct: 457 TKGPRPAAAAAAATPAVRTVPQYKYAVGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 516
Query: 357 MLVATSPDERKDILGQRLYPLVKKL 381
ML + P E+K +LG+ L+PL++ +
Sbjct: 517 MLASAPPQEQKQMLGEWLFPLIQAM 541
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL TIDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ FS +G+ITS+++ D
Sbjct: 210 KQLFSPYGEITSMIVKSD 227
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L+ + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E LKQ FS G I+S+ I+++D
Sbjct: 191 KFTNL------YVKNFPDTVTEAHLKQLFSPYGEITSM-IVKSD 227
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGS-KVLYVARAQKKAERKAILRAQFE 171
D TEE + + G S KD + + + +LYV Q +A R AIL+A+F+
Sbjct: 338 DSKTEETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAILKAKFD 397
Query: 172 RMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
+ E LY KN++D +++ LK+ F GTI+S K+M+ D+ SKG
Sbjct: 398 TLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCF 457
Query: 225 QTKRERTSYLRIMYAK 240
T E + M+ K
Sbjct: 458 GTHEEANKAVTEMHLK 473
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 2 WSTPNSEARLSGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
+ T N+E+R G N ++KNL ++++ L ++F +G I S+KV+ + +SKG+GFV
Sbjct: 396 FDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFV 455
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI 97
+ T E A A+ ++ + LYVG +R R+
Sbjct: 456 CFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRL 492
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 59/138 (42%), Gaps = 38/138 (27%)
Query: 85 LYVGPFIRRADR---------IQEGSSFN-----NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R S N NLY+KNLDD M ++ L E F +G I
Sbjct: 377 LYVGPHQSRARRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTI 436
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + KD SKGFG K LYV A+K+ +R + L+
Sbjct: 437 TSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 496
Query: 168 AQFERMRKERAELYKNIN 185
+F RM R + +N
Sbjct: 497 QRF-RMHPIRHHINNALN 513
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L +D+TE +L E F+ G + S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKNY 146
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL TIDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ FS +G+ITS+++ D
Sbjct: 210 KQLFSPYGEITSMIVKSD 227
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L+ + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGTGNIFVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E LKQ FS G I+S+ I+++D
Sbjct: 191 KFTNL------YVKNFPDTVTEAHLKQLFSPYGEITSM-IVKSD 227
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGS-KVLYVARAQKKAERKAILRAQFE 171
D TEE + + G S+ KD + + + +LYV Q +A R AIL+A+F+
Sbjct: 335 DAKTEETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKAKFD 394
Query: 172 RMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
+ E LY KN++D +++ LK+ F GTI+S K+M+ D+ SKG
Sbjct: 395 TLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCF 454
Query: 225 QTKRERTSYLRIMYAK 240
T E + M+ K
Sbjct: 455 GTHEEANKAVTEMHLK 470
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 2 WSTPNSEARLSGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
+ T N+E+R G N ++KNL ++++ L ++F +G I S+KV+ + +SKG+GFV
Sbjct: 393 FDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFV 452
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI 97
+ T E A A+ ++ + LYVG +R R+
Sbjct: 453 CFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRL 489
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 52/123 (42%), Gaps = 37/123 (30%)
Query: 85 LYVGPFIRRADR---------IQEGSSFN-----NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R S N NLY+KNLDD M ++ L E F +G I
Sbjct: 374 LYVGPHQSRARRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTI 433
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + KD SKGFG K LYV A+K+ R + L+
Sbjct: 434 TSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQ 493
Query: 168 AQF 170
+F
Sbjct: 494 QRF 496
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L +D+TE +L E F+ G + S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKNY 146
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S +V +E SKGYGFV
Sbjct: 18 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFV 77
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
+ T E+A +AI K+ G + +++VG FI R +R + + F N+Y+KN D++
Sbjct: 78 HFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELD 137
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E LV F ++GK+TS + D NG ++GF G K LYV
Sbjct: 138 DEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYV 197
Query: 154 ARAQKKA 160
RAQKKA
Sbjct: 198 GRAQKKA 204
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA 160
S N+++KNLD + + + + FS FG I S ++ D SKG+G A A
Sbjct: 29 SGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNA 88
Query: 161 ERKA---------------ILRAQFERMRKERAELY-----KNINDEVDEIELKQYFSQC 200
K I R + ER+ ++A + KN DE+D+ +L F +
Sbjct: 89 ISKVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKY 148
Query: 201 GTISSVKIMRTDRGISKG 218
G ++S K+M + G ++G
Sbjct: 149 GKVTSAKVMVDENGKNRG 166
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVTETHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G+ITS+++ D
Sbjct: 210 KELFSPYGEITSMIVKTD 227
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGAGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E LK+ FS G I+S+ I++TD
Sbjct: 191 KFTNL------YVKNFPDSVTETHLKELFSPYGEITSM-IVKTD 227
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 136 SKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEV 188
+K +G+ +LYV Q +A R AIL+A+F+ + E LY KN++D +
Sbjct: 401 NKKESGSENADSPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAI 460
Query: 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGH---CMAIAQTKRERTS--YLRIMYAK 240
D+ LK+ F GTI+S K+MR D+ SKG C A+ + + + +L+I+ K
Sbjct: 461 DDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGK 517
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID+ L ++F +G I S+KV+ + +SKG+GFV ++ E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 510 HLKIINGKPLYVGLAEKREQRL 531
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 38/138 (27%)
Query: 85 LYVGPFIRRADR--IQEGSSFN------------NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R I + N NLY+KNLDD + ++ L E F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + +D SKGFG K LYV A+K+ +R + L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 168 AQFERMRKERAELYKNIN 185
+F RM R + +N
Sbjct: 536 QRF-RMHPIRHHMNNALN 552
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L ++FS +G+I S ++V + K++ + F+ Y+ ESA +A+E L
Sbjct: 194 NLYVKNFPDSVTETHLKELFSPYGEITS--MIVKTDNKNRKFCFINYADSESAKNAMENL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L++D+TE +L E F+ G ++S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKSY 146
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI++++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVTEAHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ FS FG+ITS+++ D
Sbjct: 210 KQLFSPFGEITSMIVKTD 227
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGAGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ D G SK + GSK +YV KK+ER A
Sbjct: 132 SCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-ATNDT 190
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+F + KN D V E LKQ FS G I+S+ I++TD
Sbjct: 191 KFTNL------YVKNFPDSVTEAHLKQLFSPFGEITSM-IVKTD 227
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 136 SKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEV 188
SK +G+ +LYV Q +A R AIL+A+F+ + E LY KN++D +
Sbjct: 401 SKKESGSENADSPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAI 460
Query: 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGH---CMAIAQTKRERTS--YLRIMYAK 240
D+ LK+ F GTI+S K+MR D+ SKG C A+ + + +L+I+ K
Sbjct: 461 DDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGK 517
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID+ L ++F +G I S+KV+ + +SKG+GFV ++ E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 510 HLKIINGKPLYVGLAEKREQRL 531
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 38/138 (27%)
Query: 85 LYVGPFIRRADR--IQEGSSFN------------NLYVKNLDDDMTEEILVEKFSEFGKI 130
LYVGP RA R I + N NLY+KNLDD + ++ L E F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 131 TSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
TS + +D SKGFG K LYV A+K+ +R + L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 168 AQFERMRKERAELYKNIN 185
+F RM R + +N
Sbjct: 536 QRF-RMHPIRHHMNNALN 552
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L Q+FS FG+I S ++V + K++ + F+ Y+ ESA +A+E L
Sbjct: 194 NLYVKNFPDSVTEAHLKQLFSPFGEITS--MIVKTDNKNRKFCFINYADSESAKNAMENL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L++D+TE +L E F+ G ++S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKSY 146
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 188/445 (42%), Gaps = 111/445 (24%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSS 102
VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 4 VVRDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 63
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 64 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 123
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
K +YV RAQKK ER+ L+ +FE+M+++R Y KN++D +D+
Sbjct: 124 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 183
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIA 224
L++ FS GTI+S K+M + G SKG C +A+A
Sbjct: 184 LRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 242
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIFPV----------------HPTLYQRA-------- 260
Q K ER ++L Y ++ + + PV P RA
Sbjct: 243 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQI 302
Query: 261 LQVYQAPDFRHGGMIPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGH 306
Q+ +P + G P+ F +P PP P P ++ R A +
Sbjct: 303 AQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQ 362
Query: 307 ANFPMPLMLSNLQKPS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSS 356
P P + P+ Y Y + P+ A +T + +S
Sbjct: 363 TMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 422
Query: 357 MLVATSPDERKDILGQRLYPLVKKL 381
ML + P E+K +LG+RL+PL++ +
Sbjct: 423 MLASAPPQEQKQMLGERLFPLIQAM 447
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 104/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + ++YVG ++ +R E F NLYVKNLDD
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 178
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 179 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 237
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L Q+ +RM RA
Sbjct: 238 YVALAQRKEERQAHLTNQYMQRMASVRA 265
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 32/269 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN FVKNL +D+ +L IF +FG+I S KV+ + G+S+GYGFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 61 QYSTPESALDAIEKLQG----ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDM 115
+ +A +AIE + G A + LYV FIRR R+ ++F N+Y+K L +
Sbjct: 61 HFKDDTAAKNAIESMNGDKEHADAAKAALYVANFIRRNARLAALVANFTNVYIKQLLPTV 120
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGS--------------------------K 149
++ + + FS+FG ITS KD NG + F + +
Sbjct: 121 NKDTIEKFFSKFGGITSAATCKDKNGRAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGE 180
Query: 150 VLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
LYV RAQ ++ER LR ++ + + LY +N + E E +L F + GTI S ++
Sbjct: 181 KLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRV 240
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIM 237
M G S+G + + + LR M
Sbjct: 241 MTDANGNSRGFGFVSFENADQANAALREM 269
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A ++ N ++K L T++ + + FSKFG I S+ + G++ + F + + A
Sbjct: 103 ALVANFTNVYIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDA 160
Query: 69 LDAIEKLQGATVERM-----ELYVGPFIRRADRI--------QEGSSFNNLYVKNLDDDM 115
+ AIE +E + +LYV R++R+ Q S NNLYV+N D +
Sbjct: 161 VKAIEAFHDQVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEF 220
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E+ L F E+G I S + DANG S+GFG K L
Sbjct: 221 SEKDLHVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLI 280
Query: 153 VARAQKKAERKAILRAQFER 172
V AQ++ +R +LR QF++
Sbjct: 281 VNIAQRRDQRFMMLRVQFQQ 300
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 188/445 (42%), Gaps = 111/445 (24%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSS 102
VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 98 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 157
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 158 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 217
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
K +YV RAQKK ER+ L+ +FE+M+++R Y KN++D +D+
Sbjct: 218 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIA 224
L++ FS GTI+S K+M + G SKG C +A+A
Sbjct: 278 LRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIFPV----------------HPTLYQRA-------- 260
Q K ER ++L Y ++ + + PV P RA
Sbjct: 337 QRKEERQAHLTNQYMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQI 396
Query: 261 LQVYQAPDFRHGGMIPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGH 306
Q+ +P + G P+ F +P PP P P ++ R A +
Sbjct: 397 AQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQ 456
Query: 307 ANFPMPLMLSNLQKPS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSS 356
P P + P+ Y Y + P+ A +T + +S
Sbjct: 457 TMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 516
Query: 357 MLVATSPDERKDILGQRLYPLVKKL 381
ML + P E+K +LG+RL+PL++ +
Sbjct: 517 MLASAPPQEQKQMLGERLFPLIQAM 541
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN FVKNL +IDN L FS FG+I S KV + GKSK YGFV
Sbjct: 90 MWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Y ESA +AIEK+ G + +YVG FI+R++R + F NLYVKN D +TE L
Sbjct: 150 HYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERATNDTKFTNLYVKNFPDSVTEAHL 209
Query: 121 VEKFSEFGKITSLVISKD 138
+ FS +G+ITS+++ D
Sbjct: 210 KQLFSPYGEITSMIVKTD 227
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 38/221 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQY---STPESALDAIE 73
+V +L + L++IF+ G + S +V S KS GY +V Y + E ALD +
Sbjct: 19 YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M + P +R+ S N++VKNLD + + L + FS FG I
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRK-------SGAGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERM------------RKERA- 178
S ++ D G SK +G +V +++ ++AI + ++ R ERA
Sbjct: 132 SCKVATDEFGKSKSYG----FVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERAT 187
Query: 179 ------ELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
LY KN D V E LKQ FS G I+S+ I++TD
Sbjct: 188 NDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSM-IVKTD 227
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 10/172 (5%)
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLY-VKNLDDDMTEEILVEKFSEFGKITSLVI 135
GAT E ++ G + D+ E S + N+ +D I ++ G+ T+ +
Sbjct: 334 GATSESVKGNEGNKVESDDKANETSGVTSTDGASNVKEDGASSIAANAAAQ-GESTNGIN 392
Query: 136 SKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEV 188
KD+ G+ +LYV Q +A R AIL+A+F+ + E LY KN++D +
Sbjct: 393 KKDS-GSESADSPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAI 451
Query: 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
D+ LK+ F GTI+S K+MR D+ SKG + E + M+ K
Sbjct: 452 DDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLK 503
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ID+ L ++F +G I S+KV+ + +SKG+GFV ++ E A A+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 76 QGATVERMELYVGPFIRRADRI 97
+ LYVG +R R+
Sbjct: 501 HLKIINGKPLYVGLAEKREQRL 522
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN ++ L Q+FS +G+I S ++V + K++ + F+ Y+ ESA +A+E L
Sbjct: 194 NLYVKNFPDSVTEAHLKQLFSPYGEITS--MIVKTDNKNRKFCFINYADSESAKNAMENL 251
Query: 76 QGATV 80
G +
Sbjct: 252 NGKKI 256
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV +L++D+TE +L E F+ G ++S+ + +D+ T K G YV +A+
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDS-VTRKSLG--YAYVNYHNLADAERAL 74
Query: 166 LRAQFERMRKERAEL------------------YKNINDEVDEIELKQYFSQCGTISSVK 207
+ ++ + A L KN++ +D L FS G I S K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 208 IMRTDRGISKGH 219
+ + G SK +
Sbjct: 135 VATDEFGKSKSY 146
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 179/422 (42%), Gaps = 102/422 (24%)
Query: 54 SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVK 109
SKGYGFV + T E+A AIEK+ G + +++VG F R +R E F N+Y+K
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------------- 147
N +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKEL 224
Query: 148 -SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQ 199
K +YV RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS
Sbjct: 225 NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSP 284
Query: 200 CGTISSVKIMRTDRGISKGH---C-------------------------MAIAQTKRERT 231
GTI+S K+M + G SKG C +A+AQ K ER
Sbjct: 285 FGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Query: 232 SYLRIMYAKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAP 267
++L Y ++ + + PV P RA Q+ +P
Sbjct: 344 AHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSP 403
Query: 268 DFRHGGMIPNGFS-------PPPPSPLF-LMAPDSVTQYRGAMMNGHANFPMPLMLSNLQ 319
+ G P+ F P P P F M P S R P + ++
Sbjct: 404 RWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRXXXXXAVRTVPQYKYAAGVR 463
Query: 320 KPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLYPLVK 379
P + +QP+ G A SML + P E+K +LG+RL+PL++
Sbjct: 464 NPQQHL-NAQPQVTMQQPAVHVQGQEPLTA------SMLASAPPQEQKQMLGERLFPLIQ 516
Query: 380 KL 381
+
Sbjct: 517 AM 518
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 116/234 (49%), Gaps = 56/234 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFN------------ 104
+ T E+A +I+K+ G + ++YVG FI R +R +E F
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFELKRK 204
Query: 105 ---------------NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF--- 146
NLYVKNLDD + +E L ++F+ FG ITS + + G SKGF
Sbjct: 205 FEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFV 263
Query: 147 --------------------GSKVLYVARAQKKAERKAILRAQF-ERMRKERAE 179
GSK LYVA AQ+K +RKA L +Q+ +RM R +
Sbjct: 264 CFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANVRMQ 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 61/258 (23%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + I L + FS G + S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD ++ + + + FS F
Sbjct: 70 DTMNFDMIKGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S +++D +G SKG+G K +YV + + ER+
Sbjct: 123 GNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 165 IL-----------------RAQFERMRKERAELY-------KNINDEVDEIELKQYFSQC 200
L + +FE+++ ER Y KN++D +D+ L++ F+
Sbjct: 183 ELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPF 242
Query: 201 GTISSVKIMRTDRGISKG 218
GTI+S K+M + G SKG
Sbjct: 243 GTITSAKVM-MEEGRSKG 259
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 69 LDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K+ + + G SKG+
Sbjct: 129 KVAQDESGASKGY 141
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 107/437 (24%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS---- 102
VV E SKGYGFV + T E+A AIE + G + +++VG F R +R +E S
Sbjct: 128 VVCDERGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKALK 187
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +D T+E L E FS FG+ S+ + KD G S+GFG
Sbjct: 188 FTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVD 247
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
KV+YV RAQK+ ER+ L+ +FE ++++R + Y KN++D +D+
Sbjct: 248 EMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 307
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIA 224
L++ F+ GTI+S K+M TD S+G C +A+A
Sbjct: 308 LRKEFAPYGTITSAKVM-TDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 366
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA---LQVYQAPDFRHGGMIPNGFSP 281
Q + ER + L Y ++ L + PV + YQ+A + V Q P PN S
Sbjct: 367 QRREERKAILTNKYMQRLATLRTMSSPVIDS-YQQAGYYMTVPQPPT--RSFYSPNAVSA 423
Query: 282 PPPSPLF------LMAPDSVTQ--YRGAMMNG---HANFPMPLMLSNLQKPS-------- 322
P + L P ++ RG+ A+ P ++S+ QK +
Sbjct: 424 MRALPRWTGQPHRLQGPYTIVSGPRRGSTPIASVRQASTQAPNIISSAQKTNNIGTQTVG 483
Query: 323 --YNYPISQPRAGQ-AAANNLTNGNHRAAA--------------SNENLSSMLVATSP-D 364
+ P PR+GQ ++ + N H A E L++ ++A +P
Sbjct: 484 GRADIP-GIPRSGQYKYSSAVRNAQHVIAVHAPPTRPQPSVHIQGQEPLTASMLAAAPLM 542
Query: 365 ERKDILGQRLYPLVKKL 381
++K +LG+RLYPL+ L
Sbjct: 543 DQKQLLGERLYPLISAL 559
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 40/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN + KL ++FS FG S +V+ + G+S+G+GFV ++ A A++++
Sbjct: 190 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 249
Query: 76 QGATVERMELYVGPFIRR---------------ADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G + +YVG +R DRIQ NLYVKNLDD + +E L
Sbjct: 250 NGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVKNLDDGIDDERL 308
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQ 157
++F+ +G ITS + D S+GFG +K LYVA AQ
Sbjct: 309 RKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 367
Query: 158 KKAERKAILRAQF 170
++ ERKAIL ++
Sbjct: 368 RREERKAILTNKY 380
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 5/151 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 17 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 75
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 76 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMD 135
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L E F++FG S+ + D +G SKGFG
Sbjct: 136 DERLKEIFNKFGAFLSVKVMTDDSGRSKGFG 166
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ +L +IF+KFG S KV+ G+SKG+GFV + E A
Sbjct: 117 AKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDA 176
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A++++ G + ++YVGP + +R E
Sbjct: 177 QKAVDEMNGKEINGRQVYVGPCPXKVERQTE 207
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 29/142 (20%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------- 147
S N+++KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 28 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERA 86
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQY 196
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+
Sbjct: 87 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFTNVYIKNFGEDMDDERLKEI 142
Query: 197 FSQCGTISSVKIMRTDRGISKG 218
F++ G SVK+M D G SKG
Sbjct: 143 FNKFGAFLSVKVMTDDSGRSKG 164
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 144/317 (45%), Gaps = 87/317 (27%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSS 102
VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 98 VVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKE 157
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 158 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 217
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
K +YV RAQKK ER+ L+ +FE+M+++R Y KN++D++D+
Sbjct: 218 EMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDER 277
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGH---C-------------------------MAIA 224
L++ FS GTI+S K+M + G SKG C +A+A
Sbjct: 278 LRKAFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 225 QTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPP 284
Q K ER ++L Y QR V P+ + N + P PP
Sbjct: 337 QRKEERQAHLTNEY------------------MQRMASVRAVPN-----PVINPYQPAPP 373
Query: 285 SPLFLMAPDSVTQYRGA 301
S F MA TQ R A
Sbjct: 374 SGYF-MAAVPQTQNRAA 389
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 153 AKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 212
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A++++ G + +YVG ++ +R E F NLYVKNLDDD
Sbjct: 213 QKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDD 272
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L + FS FG ITS + + G SKGFG +K L
Sbjct: 273 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ER+A L ++ +RM RA
Sbjct: 332 YVALAQRKEERQAHLTNEYMQRMASVRA 359
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 143/308 (46%), Gaps = 62/308 (20%)
Query: 46 VVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGS 101
V + G SKGYGFV + T +SA +IEK+ G + +++VG F+ R DR Q+
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAK 494
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-------------- 147
+ N+Y+KN+D+++ E+ L E F ++G ITS + +G+S+GFG
Sbjct: 495 LYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAV 554
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDE 190
K YV RAQKK ER+ L+ +FE+ + ER Y KN++D +D+
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF 250
L++ FS GTI S K+M D G SKG + E T + M G
Sbjct: 615 ERLRREFSAFGTIKSAKVM-MDDGRSKGFGFVYFSSPEEATKAVTDM-----NGRIVGTK 668
Query: 251 PVHPTLYQRAL--------QVYQ----------APDFRHGGMIPNG-FSPPPPSPLFLMA 291
P++ TL QR Q Q P ++ G NG F P P P +
Sbjct: 669 PLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIGPIYQPGA--SNGYFVPTIPQPQYFYG 726
Query: 292 PDSVTQYR 299
P +TQ R
Sbjct: 727 PTQMTQIR 734
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 39/193 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ ++ +L ++F K+G I S KV+ +G S+G+GFV + P+ A A+ +L
Sbjct: 498 NVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTEL 557
Query: 76 QG-ATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E YV ++ +R QE F NLYVKNLDD + +E L
Sbjct: 558 HGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERL 617
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQ 157
+FS FG I S + D +G SKGF G+K LYV AQ
Sbjct: 618 RREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQ 676
Query: 158 KKAERKAILRAQF 170
+K +RKA L +Q+
Sbjct: 677 RKKDRKAHLDSQY 689
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL+ + + L ++F +FG+I S+ V+ +GKSK +GF+ + T E A A+E L
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESL 99
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + E YVG ++++R QE S F NLYVKNLDD + +E L
Sbjct: 100 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 159
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E FSEFG ITS + +D +G S+G G SK LYVA AQ+
Sbjct: 160 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQR 219
Query: 159 KAERKAILRAQFERMR 174
K ER+A LRAQF ++R
Sbjct: 220 KEERRAKLRAQFSQLR 235
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 32/205 (15%)
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEEILVEKFS 125
A AI+KL G + ++YVG F+R+ +R + F N+YVKNL + T++ L + F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 126 EFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAER 162
EFG ITS V+ +DA+G SK FG K YV +AQKK+ER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 163 KAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ L+++FE+ KE + Y KN++D +D+ +LK+ FS+ GTI+S K+MR GI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 216 SKGHCMAIAQTKRERTSYLRIMYAK 240
S+G T E + L M K
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGK 205
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 5/151 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 59 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 117
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 118 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 177
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E L + F +FG S+ + D +G SKGFG
Sbjct: 178 DERLKDLFGKFGPALSVKVMTDESGKSKGFG 208
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 42/218 (19%)
Query: 31 LHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAI--EKLQGATVERME 84
L++ FS G I S +V +S GY +V + P E ALD + + ++G V M
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 85 LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSK 144
P +R+ S N+++KNLD + + L + FS FG I S + D NG SK
Sbjct: 61 SQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SK 112
Query: 145 GFG-----------------------SKVLYVARAQKKAERKAILRAQFERMRKERAELY 181
G+G + ++V R + + ER+A L A+ KE +Y
Sbjct: 113 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFTNVY 168
Query: 182 -KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN +++D+ LK F + G SVK+M + G SKG
Sbjct: 169 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 206
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 159 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 218
Query: 69 LDAIEKLQG 77
A++++ G
Sbjct: 219 QKAVDEMNG 227
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 135/271 (49%), Gaps = 65/271 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN V+S + SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGN------------------------------VMSDDQGSKGYAFV 113
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E F N+Y+KN +DM
Sbjct: 114 HFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNKAGEFTNVYIKNFGEDMD 173
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS++G+ S+ + D++G SKGFG ++++V
Sbjct: 174 DEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKEMNGKDINGQLIFV 233
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE+++KER +LY KN++D +D+ +L++ FS G+IS V
Sbjct: 234 GRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRV 293
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M+ + G SKG + + E T + M
Sbjct: 294 KVMQ-EGGQSKGFGLICFSSLEEATKAMTEM 323
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQ 76
++KNL TID+ KL + FS FG I S+V V QEG +SKG+G + +S+ E A A+ ++
Sbjct: 267 YIKNLDDTIDDEKLRKEFSSFGSI--SRVKVMQEGGQSKGFGLICFSSLEEATKAMTEMN 324
Query: 77 G 77
G
Sbjct: 325 G 325
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 114/212 (53%), Gaps = 32/212 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGF 59
MWS + R SG+GN FVKNL ++IDN L+ FS FG+I S KV + G SKGYG+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A +AI K+ G + E++VG F +R DR + + N YVKN+ T+
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR-PDADDWTNCYVKNIPTQWTDAD 119
Query: 120 LVEKFSEFGKITSLVISKD---------------------------ANGTSKGFGSKV-- 150
L+++F FGK+ S V+ KD NG S G V
Sbjct: 120 LLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVET 179
Query: 151 -LYVARAQKKAERKAILRAQFERMRKERAELY 181
LYV +AQK++ER+ LR +FE+++ ER Y
Sbjct: 180 ELYVGKAQKRSERERELRNKFEQLKMERINKY 211
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV ++ G SKGYGFV
Sbjct: 86 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENG-SKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
+ T E+ + AIEK+ G + +++VG F+ R++RI++ F N+Y+KN D
Sbjct: 145 HFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYD 204
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
E+ L F ++G + S+ + +D +G S+GFG V Y + + +A +A+
Sbjct: 205 EKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGF-VAYDSHEEAQAAVEAM 252
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 44/258 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ESALDA 71
+V +L + L++ FS+ G + S +V V+++ +S GY +V + P E ALD
Sbjct: 15 YVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAERALDT 72
Query: 72 I--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ + ++G + M P +R+ S N+++KNLD + + L + FS FG
Sbjct: 73 MNYDPIKGRPIRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAFGN 125
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +S + NG SKG+G K ++V + ++ER +
Sbjct: 126 ILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSER---I 181
Query: 167 RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQT 226
+ ER+R+ KN D+ DE L+ F + G + SV +MR G S+G +
Sbjct: 182 KKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDS 241
Query: 227 KRERTSYLRIMYAKQGPG 244
E + + M ++ G
Sbjct: 242 HEEAQAAVEAMNGQEIEG 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R+ N ++KN D L +F K+G ++S V+ ++G S+G+GFV Y + E A
Sbjct: 187 RVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQ 246
Query: 70 DAIEKLQGATVE 81
A+E + G +E
Sbjct: 247 AAVEAMNGQEIE 258
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 32/243 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R + +GN FVKNL +DN L+ +FS FG+I S KV ++G SKGYG+V
Sbjct: 196 MWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSCKVEY-EKGISKGYGYV 254
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T ES+ AIE++ G V ++ PF+ + +R + N ++ +N D+ +T+E++
Sbjct: 255 HFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVE---NKVFFRNADESVTQEMI 311
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFGS----------KVLYVA--------------RA 156
E+ S+FG+I + D+ G SKG G+ K+L V R
Sbjct: 312 QEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPITFDRV 371
Query: 157 QKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGIS 216
+ K ER LR + ++ NI++ +++ +K+ FS+ G I KI++ + G +
Sbjct: 372 KNKIERVTELR----KKTTDQTLFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKN 427
Query: 217 KGH 219
KG+
Sbjct: 428 KGY 430
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 37/232 (15%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG---KSKGYGFVQY---STP 65
S + + +V +LAS ++ + L+++FSK G + + V ++ +S GY +V +
Sbjct: 117 SQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDA 176
Query: 66 ESALDAIE--KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
E ALD + + G M Y P R+ + N++VKNL+ + +L +
Sbjct: 177 ERALDTLNYSMIHGKPCRIMWSYRDPTKRKTN-------VGNVFVKNLEKAVDNAMLYDV 229
Query: 124 FSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR---------------- 167
FS FG I S + + G SKG+G YV ++ KAI R
Sbjct: 230 FSSFGNILSCKVEYEK-GISKGYG----YVHFETSESSGKAIERINGTLVLGKPIFCEPF 284
Query: 168 -AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
A+ ER + E ++N ++ V + +++ S+ G I + G SKG
Sbjct: 285 VAKVERYKVENKVFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKG 336
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 17 AFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76
F +N ++ + + SKFG+I+ + + GKSKG G V++ E A +KL
Sbjct: 297 VFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDA----QKLL 352
Query: 77 GATVERMELYVGPF--------IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFG 128
+ +++ P I R +++ ++ L++ N+D+ + +E + E+FS+ G
Sbjct: 353 AVEADSIQINGKPITFDRVKNKIERVTELRKKTTDQTLFLSNIDESIEKETIKEEFSKHG 412
Query: 129 KITSLVISKDANGTSKGFG 147
I I +D +G +KG+G
Sbjct: 413 AIIGCKIVQDESGKNKGYG 431
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+ N+ +I+ + + FSK G I K+V + GK+KGYGF+ +S A A+E L G
Sbjct: 391 FLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNG 450
Query: 78 ATVERMELYV 87
T ++ V
Sbjct: 451 FTFGNKQITV 460
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 139/289 (48%), Gaps = 50/289 (17%)
Query: 47 VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSS 102
VV E SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 98 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAKE 157
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+YVKN +DM +E L + F +FG S+ + D G SKGFG
Sbjct: 158 FTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVD 217
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELYKNIN-------DEVDEIE 192
K +YV RAQKK ER+ L+ +FE+M++++ Y+ +N D +D+
Sbjct: 218 ELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDER 277
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPV 252
L++ FS GTI+S K+M + G SKG + E T + M K + +T P+
Sbjct: 278 LRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGK----IVATK-PL 331
Query: 253 HPTLYQR--ALQVYQAPDFRHGG----MIPN----GFSPPPPSPLFLMA 291
+ L QR Q + + H +PN + P PPS F+ A
Sbjct: 332 YVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKPYQPAPPSGYFMAA 380
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 95/195 (48%), Gaps = 38/195 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKN +D+ L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 153 ARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDA 212
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+++L G + ++YVG ++ +R E F NLYVK LDD
Sbjct: 213 QKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDY 272
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ +E L ++FS FG ITS + + G SKGFG +K L
Sbjct: 273 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPL 331
Query: 152 YVARAQKKAERKAIL 166
YVA AQ+K ER+A L
Sbjct: 332 YVALAQRKEERQAHL 346
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 118/212 (55%), Gaps = 33/212 (15%)
Query: 62 YSTPESAL-DAIEKLQGATVERMELYVGPFIRRADRIQEGSS--FNNLYVKNLDDDMTEE 118
Y PE A +AIEKL G + +++VGPF+R+ DR +S FNN++VKNL + TE+
Sbjct: 2 YVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTED 61
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L+E F E+G ITS V+ ++ +G SK FG K YV +
Sbjct: 62 NLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGK 121
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ L+ +FE+ +E A+ LY KN++D + + +L++ FS+ G+I+S K+
Sbjct: 122 AQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKV 181
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G+S+G Q+ + + L M K
Sbjct: 182 MRDPNGVSRGSGFVAFQSPDDASKALAEMNGK 213
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ + L +IF ++G+I S+ V+ +GKSK +GFV + PE A A+++L
Sbjct: 48 NVFVKNLSESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKEL 107
Query: 76 QGATVERMELYVGPFIRRAD-----------RIQEGSSFN---NLYVKNLDDDMTEEILV 121
G + E YVG ++++ R+QE + N NLY+KNLDD + ++ L
Sbjct: 108 NGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLR 167
Query: 122 EKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQK 158
E FSEFG ITS + +D NG S+G GSK LYVA AQ+
Sbjct: 168 ELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQR 227
Query: 159 KAERKAILRAQFERMR 174
K +R+A L+AQF +MR
Sbjct: 228 KEDRRARLQAQFSQMR 243
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 4/151 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + S+GYGFV
Sbjct: 127 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFV 186
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D ++T
Sbjct: 187 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVT 246
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+E F +G ITS +S+D +G S+GFG
Sbjct: 247 DEEFRTMFENYGPITSASLSRDQDGVSRGFG 277
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS G++ S +V +S GY +V Y+ A+E+L
Sbjct: 56 YVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEELN 115
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 116 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDTAIDNKALHDTFAAFGNIL 168
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D S+G+G A A A E+K + +++F+
Sbjct: 169 SCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDE 228
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV + E + F G I+S + R G+S+G
Sbjct: 229 MKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRG 275
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + +F +G I S+ + Q+G S+G+GFV + + A A+E+L
Sbjct: 235 NVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEEL 294
Query: 76 QGATVERMELY 86
+ ++ LY
Sbjct: 295 HESELKGQTLY 305
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVL 151
+E L E FS+FG S+ + D G S+ FG L
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFVCL 154
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 29/141 (20%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------- 147
S N+++KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 12 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERA 70
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQY 196
+ ++V R + + ER+A + A+ KE +Y KN +++++ +L++
Sbjct: 71 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR----AKEFTNVYIKNFGEDMEDEKLREI 126
Query: 197 FSQCGTISSVKIMRTDRGISK 217
FS+ G S+++M D G S+
Sbjct: 127 FSKFGPALSIRVMTDDGGKSR 147
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KN+ +IDN L+ S FG+I S KVV + G SKGYGFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIE + G + +++VG F R +R+ E F N+Y+KN +D+
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVL 151
E L FSEFGK S+ + D +G S+GFG L
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFVCL 154
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 21/138 (15%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA 160
S N+++KN+D+ + + L + S FG I S + D NG SKG+G A +A
Sbjct: 12 SGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRA 70
Query: 161 ----------ERKAIL---RAQFERMRK------ERAELY-KNINDEVDEIELKQYFSQC 200
+RK + +++ ERM + E +Y KN ++++D +LK FS+
Sbjct: 71 IETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEF 130
Query: 201 GTISSVKIMRTDRGISKG 218
G SV +M + G S+G
Sbjct: 131 GKTLSVCVMTDESGCSRG 148
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ FS FG+I S K VVS E SKG+GFV
Sbjct: 85 MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK-VVSDENGSKGHGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F + +R E F N+Y+KN D M
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+E L F FG+I S+ + D G SKGFG +V+ + + +KA+
Sbjct: 204 DETLNGLFGRFGQILSVKVMTDEGGKSKGFG----FVSFERHEDAQKAV 248
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 38/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ESALDA 71
+V +L + L++ FS G I S +V V+++ +S GY V + P E ALD
Sbjct: 14 YVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITR--RSLGYASVNFEQPADAERALDT 71
Query: 72 I--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ + ++G V M P +RR S N+++KNL+ + + L + FS FG
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRR-------SGVGNVFIKNLNKTIDNKALYDTFSAFGN 124
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERK---------AILRAQFERMRKERAEL 180
I S + D NG SKG G A ++A K + +F+ ++ AEL
Sbjct: 125 ILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAEL 183
Query: 181 -----------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
KN D +D+ L F + G I SVK+M + G SKG
Sbjct: 184 GTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKG 232
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ L+ +F +FG I S KV+ + GKSKG+GFV + E A A++++
Sbjct: 192 NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 76 QGATVERMELYVG 88
G + +YVG
Sbjct: 252 NGKELNGKHIYVG 264
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D S G+ S V Q
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYAS----VNFEQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ F+ ++ + + KN+N +D L FS
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTK 227
G I S K++ + G SKGH +T+
Sbjct: 123 GNILSCKVVSDENG-SKGHGFVHFETE 148
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 32/196 (16%)
Query: 77 GATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
G + ++ V PF+RR +R + FNN++VKNL ++ T+E L+E F FG I+S V
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
+ +DANG SK FG K YV RAQKK+ER+A L+ +FE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 172 RMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
++RKER E + KN++D +D+ +LK+ FS GT++S KIMR+ +G G
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 225 QTKRERTSYLRIMYAK 240
+K E + M K
Sbjct: 181 SSKDEAMRAVNEMNGK 196
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 93/196 (47%), Gaps = 37/196 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNLA + L ++F FG I S+ V+ G SK +GFV + + A A+E +
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
G E YVG ++++R E F NLY+KN+DD + +E L
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKLK 150
Query: 122 EKFSEFGKITSLVISKDANG--TSKGF---------------------GSKVLYVARAQK 158
E FS FG + S I + G GF GSK LYVA AQ+
Sbjct: 151 ELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQR 210
Query: 159 KAERKAILRAQFERMR 174
K ER+A L+AQF ++R
Sbjct: 211 KDERRAKLQAQFAQLR 226
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + +R + GN FVKNL +IDN L FS FG+I S K+ EG S GYGF+
Sbjct: 86 MWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSEGNSLGYGFI 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEI 119
+ PESA +AI +L G + +YVG F R+A+R E +F N+YVK++ +EE
Sbjct: 146 HFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKTFTNVYVKHIPKTWSEET 205
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGF 146
L F +GKI+SLV+ D+ G GF
Sbjct: 206 LHTLFGVYGKISSLVLQSDSKGRPFGF 232
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 42/284 (14%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VK++ T LH +F +G I S +V+ + K + +GFV + PESA A+ L
Sbjct: 191 NVYVKHIPKTWSEETLHTLFGVYGKI--SSLVLQSDSKGRPFGFVNFEDPESAKKAVANL 248
Query: 76 QGATVERMELYVGPFIRRADRIQEG-----------------SSFNNLYVKNLDDDMTEE 118
A V + + + ++R + G + +N Y + D + +E
Sbjct: 249 HNALVTPLGVELNS--NNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDKEDPQE 306
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER- 177
VEK S+ + N LYV+RAQK+ ER+ +L++Q E R+ +
Sbjct: 307 ADVEKNSD-----------EENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEAARESQN 355
Query: 178 ----AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTS 232
LY KN+++ + E +L+ F GTISSV I + GIS+G + E T
Sbjct: 356 RYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATK 415
Query: 233 YLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
+ M+ K G + +H QRAL++ Q GG +P
Sbjct: 416 AITEMHLKLVRGKPLYVG-LHERKEQRALRLQQR---IRGGTVP 455
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 34/222 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++IF+ + S ++ +S GY +V Y++ A A++ L
Sbjct: 15 YVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTLN 74
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + +R D ++ N++VKNLD + + L + FS FG I S I+
Sbjct: 75 FTCIRSRPCRIMWCLR--DPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIA 132
Query: 137 KDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQFERM 173
D+ G S G+ G + +YV + Q+KAER F
Sbjct: 133 TDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAER-------FSEK 185
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
K +Y K+I E L F G ISS+ + +G
Sbjct: 186 DKTFTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG 227
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S+ R G+ N +VKNL+ ++ L +F +G I S + + G S+G+GFV + +P+
Sbjct: 353 SQNRYQGV-NLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPD 411
Query: 67 SALDAIEKLQGATVERMELYVGPFIR---RADRIQE 99
A AI ++ V LYVG R RA R+Q+
Sbjct: 412 EATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQ 447
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
NLYVKNL + MTE L F +G I+S+ I D +G S+GFG +V+ KA
Sbjct: 361 NLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFG----FVSFLSPDEATKA 416
Query: 165 ILRAQFERMRKERAELYKNINDEVDEIELK-QYFSQCGTISSV 206
I + +R + LY +++ ++ L+ Q + GT+ V
Sbjct: 417 ITEMHLKLVRGK--PLYVGLHERKEQRALRLQQRIRGGTVPPV 457
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + +R + GN FVKNL +IDN L FS FG+I S K+ EGKS GYGF+
Sbjct: 86 MWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFI 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEI 119
+ +SA +AI +L GA + +YVG F ++A+R E +F N+YVK++ TE++
Sbjct: 146 HFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDL 205
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGF 146
L + F +GKI+SLV+ D+ G GF
Sbjct: 206 LYKIFGVYGKISSLVLQSDSKGRPFGF 232
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 130/284 (45%), Gaps = 39/284 (13%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VK++ + L++IF +G I S +V+ + K + +GFV + P+SA A+ L
Sbjct: 191 NVYVKHIPKSWTEDLLYKIFGVYGKI--SSLVLQSDSKGRPFGFVNFENPDSAKAAVAAL 248
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
A V P D E S+ N D + + + + S + S
Sbjct: 249 HNALVT-------PVGVELDSTAETSADNE---AGADSETSSKQESGEASNKKQTASSET 298
Query: 136 SKDANGTS-------------KGFGSKV----LYVARAQKKAERKAILRAQFERM----- 173
SKD++GTS K + V LYV+RAQKK ER+ +L++Q E +
Sbjct: 299 SKDSSGTSNEEFAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHEAVKESHQ 358
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTS 232
R + LY KN+ D ++E +L+ F GT+SSV I + G+S+G + E T
Sbjct: 359 RYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATK 418
Query: 233 YLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
+ M+ K G + +H QRAL++ Q GG +P
Sbjct: 419 AITEMHLKLVRGKPLYV-GLHERKEQRALRLQQR---IRGGAVP 458
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 44/227 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST---PESALDAIE 73
+V +L + + L++IF+ + S ++ +S GY +V Y++ E ALD +
Sbjct: 15 YVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTLN 74
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P RR + N++VKNLD + + L + FS FG I
Sbjct: 75 FTCIRGRPCRIMWCLRDPASRRNND-------GNVFVKNLDKSIDNKTLFDTFSLFGNIM 127
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S I+ D G S G+ G + +YV + QKKAER
Sbjct: 128 SCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER------ 181
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
F K +Y K+I E L + F G ISS+ + +G
Sbjct: 182 -FSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG 227
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S R G+ N +VKNLA +I+ L +F FG + S + + G S+G+GFV + +P+
Sbjct: 356 SHQRYQGV-NLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPD 414
Query: 67 SALDAIEKLQGATVERMELYVGPFIR---RADRIQE 99
A AI ++ V LYVG R RA R+Q+
Sbjct: 415 EATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQ 450
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLY--VARAQKKAER 162
LYV +LD D+TE +L E F+ ++S+ I +DA T + G + V Y VA A++ +
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDA-LTRRSLGYAYVNYNSVADAERALDT 72
Query: 163 -------------KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
LR R + KN++ +D L FS G I S KI
Sbjct: 73 LNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIA 132
Query: 210 RTDRGISKGH 219
G S G+
Sbjct: 133 TDVEGKSLGY 142
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN +++ FS FG+I + V +EG S+GYGFV + + E+A AIEK+ G
Sbjct: 110 YIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVNG 169
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 170 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 229
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 230 LDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 289
Query: 173 MRKERA 178
++++A
Sbjct: 290 RKRQKA 295
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + E FS FG I + ++KD G S+G+G +V ++A R AI
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYG----FVHFDSEEAARAAI 164
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 165 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 224
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 225 SHKLMLDEEGRSR 237
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + +R + GN FVKNL +IDN L FS FG+I S K+ EGKS GYGF+
Sbjct: 86 MWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFI 145
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEI 119
+ +SA +AI +L GA + +YVG F ++A+R E +F N+YVK++ TE++
Sbjct: 146 HFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDL 205
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGF 146
L + F +GKI+SLV+ D+ G GF
Sbjct: 206 LYKIFGVYGKISSLVLQSDSKGRPFGF 232
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 39/284 (13%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VK++ + L++IF +G I S +V+ + K + +GFV + P+SA A+ L
Sbjct: 191 NVYVKHIPKSWTEDLLYKIFGVYGKI--SSLVLQSDSKGRPFGFVNFENPDSAKAAVAAL 248
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
A V P D E N D + + + + S + S
Sbjct: 249 HNALVT-------PVGVELDSTAETPVDNE---AGADSETSSKQESGEASNKKQTASGEA 298
Query: 136 SKDANGTS-------------KGFGSKV----LYVARAQKKAERKAILRAQFERM----- 173
SKD++GTS K + V LYV+RAQKK ER+ +L++Q E +
Sbjct: 299 SKDSSGTSNEESAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHEAVKESHQ 358
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTS 232
R + LY KN+ D ++E +L+ F GT+SSV I + G+S+G + E T
Sbjct: 359 RYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATK 418
Query: 233 YLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
+ M+ K G + +H QRAL++ Q GG +P
Sbjct: 419 AITEMHLKLVRGKPLYV-GLHERKEQRALRLQQR---IRGGAVP 458
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 44/227 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST---PESALDAIE 73
+V +L + + L++IF+ + S ++ +S GY +V Y++ E ALD +
Sbjct: 15 YVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTLN 74
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P RR + N++VKNLD + + L + FS FG I
Sbjct: 75 FTCIRGRPCRIMWCLRDPASRRNND-------GNVFVKNLDKSIDNKTLFDTFSLFGNIM 127
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S I+ D G S G+ G + +YV + QKKAER
Sbjct: 128 SCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER------ 181
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
F K +Y K+I E L + F G ISS+ + +G
Sbjct: 182 -FSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG 227
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPE 66
S R G+ N +VKNLA +I+ L +F FG + S + + G S+G+GFV + +P+
Sbjct: 356 SHQRYQGV-NLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPD 414
Query: 67 SALDAIEKLQGATVERMELYVGPFIR---RADRIQE 99
A AI ++ V LYVG R RA R+Q+
Sbjct: 415 EATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQ 450
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLY--VARAQKKAER 162
LYV +LD D+TE +L E F+ ++S+ I +DA T + G + V Y VA A++ +
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDA-LTRRSLGYAYVNYNSVADAERALDT 72
Query: 163 -------------KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
LR R + KN++ +D L FS G I S KI
Sbjct: 73 LNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIA 132
Query: 210 RTDRGISKGH 219
G S G+
Sbjct: 133 TDVEGKSLGY 142
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 137/290 (47%), Gaps = 49/290 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M++ + R SG N FVK L + + L FS+ G + S KV + EG SKGYGFV
Sbjct: 85 MFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLSCKVALDSEGHSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+ T + A A++ + GA V E+ V PF+RR DR SF N+Y+KN+ TE
Sbjct: 145 QFETADGAKAALD-MNGAKVGDSEVEVAPFVRRVDREAMAAKSFRNIYIKNIKATATEVD 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSK-------------------------GFGSKV--LY 152
+ +FGK+TSL +++ A +K G + L
Sbjct: 204 MRTTLEKFGKVTSLFLAEHAPFLTKFALAVFEEHEAAVKAIAELNESEESGLTEEAVKLV 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKN---------INDEVDEIELKQYFSQCGTI 203
V RA K+ER +R RK+ A LY+N + D++ + +L++ F+ G I
Sbjct: 264 VCRALSKSER--------DRERKKTASLYQNHGRNLYVKHLPDDITDDKLREIFAPFGKI 315
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVH 253
+S IMR G +G + K+ T+ +R + G L S+ P++
Sbjct: 316 TSCAIMRESNGSLRGFAFVCFEDKQHATAAMREL---NGRSLESSKKPLY 362
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 31 LHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
++ +FS + S KV + +Q +S GYG+V + T A I+ L + Y+
Sbjct: 26 INNLFSSIAPVVSVKVCRDIATQ--RSLGYGYVNFQTTADAEKVIDALNFTGIAPGR-YI 82
Query: 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF- 146
D +Q S NN++VK LD ++ + L FS G++ S ++ D+ G SKG+
Sbjct: 83 RVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLSCKVALDSEGHSKGYG 142
Query: 147 -----------------GSKV----LYVARAQKKAERKAILRAQFERMRKERAELYKNIN 185
G+KV + VA ++ +R+A+ F + KNI
Sbjct: 143 FVQFETADGAKAALDMNGAKVGDSEVEVAPFVRRVDREAMAAKSFRNI------YIKNIK 196
Query: 186 DEVDEIELKQYFSQCGTISSV 206
E++++ + G ++S+
Sbjct: 197 ATATEVDMRTTLEKFGKVTSL 217
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 25/189 (13%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
G ++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK
Sbjct: 102 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 161
Query: 75 LQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+ G +++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS
Sbjct: 162 VNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSH 221
Query: 134 VISKDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQ 169
+ D G S+ FG +K LYVARA KAER+ + +
Sbjct: 222 KLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRK 281
Query: 170 FERMRKERA 178
E ++++A
Sbjct: 282 LEERKRQKA 290
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 159
Query: 166 LRA-------------QFERMRKERAE-------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +F R E LY KN+++E E L++ F G I+
Sbjct: 160 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 220 SHKLMLDEEGRSR 232
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 136/266 (51%), Gaps = 34/266 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T E+A AI + G + ++ P A R+ G +
Sbjct: 144 HFETREAASQAISTMNGMLLNDRKVGAQPCCP-AGRVGSG----------------KRPP 186
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAEL 180
+ G + + ++ NG K +VLYV RAQK+ ER++ L+ +FE++++ER
Sbjct: 187 SGRSRPAGPVPAQAVT-SMNG--KELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNR 243
Query: 181 Y-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSY 233
Y KN++D +D+ +L++ FS GTI+S K+M T+ G SKG + E T
Sbjct: 244 YQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEATKA 302
Query: 234 LRIMYAKQGPGLASTIFPVHPTLYQR 259
+ M + + ST P++ L QR
Sbjct: 303 VTEMNGR----IVSTK-PLYVALAQR 323
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ KL + FS +G I S+KV+ ++ G SKG+GFV +S+PE A
Sbjct: 243 RYQGV-NLYVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEAT 300
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 301 KAVTEMNGRIVSTKPLYVALAQRKEER 327
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 18/142 (12%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTP---ES 67
+ + +V +L + L++ FS G I S +V V S+ +S GY ++ + P E
Sbjct: 10 LASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASR--RSLGYAYINFQQPADAER 67
Query: 68 ALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
ALD + E ++G + M P +R+ S N+++KNLDD + + L + FS
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRK-------SGVGNIFIKNLDDSIDNKALYDTFS 120
Query: 126 EFGKITSLVISKDANGTSKGFG 147
FG I S + D +G S+GFG
Sbjct: 121 TFGNILSCKVVCDEHG-SRGFG 141
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D A+ S G+ Y+ Q
Sbjct: 7 GYPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN++D +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
G I S K++ + G S+G +T+ + + M
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTM 158
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN +VKNL IDN L+ FS FG+I S KV ++ +GKS+G+GFV
Sbjct: 122 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ + ESA AI KL G + +YV PF + A+R +G+ +F N+Y+K++ EE
Sbjct: 182 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAER-NDGTPKNFTNVYIKHIPASWNEE 240
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF 146
+ E+F FG+ITSL + D G F
Sbjct: 241 KIKEEFGAFGEITSLAVQTDPKGRRFAF 268
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKER-------AELY-KNINDEVDEIELKQYFSQCGT 202
LYVARAQ KAER A+L+ QF R + LY KN+ ++VD+ ELK+ F GT
Sbjct: 341 LYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGT 400
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QGPGLASTIFPVHPTLYQRA 260
++SVK+M D+G+S+G T E T + M+ K G L + +R
Sbjct: 401 VTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERL 460
Query: 261 LQVYQAP 267
Q Y+AP
Sbjct: 461 QQRYRAP 467
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +D+ +L ++F FG + S KV+V +G S+G+GFV +ST E A A+ +
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 76 QGATVERMELYVGPFIRRADRIQ 98
+ LYVG +R R++
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLE 458
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLYVKNL +D+ + L + F FG +TS+ + D G S+GFG
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFG 418
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN +VKNL IDN L+ FS FG+I S KV ++ +GKS+G+GFV
Sbjct: 122 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ + ESA AI KL G + +YV PF + A+R +G+ +F N+Y+K++ EE
Sbjct: 182 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAER-NDGTPKNFTNVYIKHIPASWNEE 240
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF 146
+ E+F FG+ITSL + D G F
Sbjct: 241 KIKEEFGAFGEITSLAVQTDPKGRRFAF 268
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKER-------AELY-KNINDEVDEIELKQYFSQCGT 202
LYVARAQ KAER A+L+ QF R + LY KN+ ++VD+ ELK+ F GT
Sbjct: 341 LYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGT 400
Query: 203 ISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QGPGLASTIFPVHPTLYQRA 260
++SVK+M D+G+S+G T E T + M+ K G L + +R
Sbjct: 401 VTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERL 460
Query: 261 LQVYQAP 267
Q Y+AP
Sbjct: 461 QQRYRAP 467
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +D+ +L ++F FG + S KV+V +G S+G+GFV +ST E A A+ +
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 76 QGATVERMELYVGPFIRRADRIQ 98
+ LYVG +R R++
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLE 458
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLYVKNL +D+ + L + F FG +TS+ + D G S+GFG
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFG 418
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
STP+S ++KNL +IDN ++ FS FG+I + V ++G S+GYGFV +
Sbjct: 108 STPDSRK-------IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF 160
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILV 121
T E+A AIEK+ G +++V FI R DR QE + F NLYVKNL ++ TE+ L
Sbjct: 161 DTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQHLR 220
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLYVARAQ 157
E F +G+ITS + D G S+ FG +K LYVARA
Sbjct: 221 EMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARAL 280
Query: 158 KKAERKAILRAQFERMRKERA 178
KAER+ + + E ++++A
Sbjct: 281 SKAERQQEINRKLEERKRQKA 301
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDTEEAARAAI 170
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+ +E E L++ F G I+
Sbjct: 171 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQHLREMFEPYGRIT 230
Query: 205 SVKIMRTDRGISK 217
S K+M D G S+
Sbjct: 231 SHKLMLDDEGRSR 243
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 28/178 (15%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGY FV + T ++A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN DDM +E L E FS++GK S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
D+ G SKGFG K+++V RAQKK ER+A L+ +F
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+E++ G V ++VG ++ +R E
Sbjct: 142 NKAVEEMNGKDVNGKMVFVGRAQKKVERQAE 172
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN D++D+ LK+ FS+ G
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGDDMDDERLKEMFSKYGKTL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M G SKG
Sbjct: 116 SVKVMTDSTGKSKG 129
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 127/272 (46%), Gaps = 46/272 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N FVK L + I+ +L FSK G + S KV + G SKGYGFV
Sbjct: 85 MFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+ T + A+E + G+ + E+ V PF+RR DR SF N+Y+KN+ TE
Sbjct: 145 QFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKSFRNIYIKNITASATEAD 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSK-------------------------GFGSKV--LY 152
+ EFGK+ SL +S+ A +K G K L
Sbjct: 204 VKAIVEEFGKVDSLFLSEHARFPTKFALVAFEEHQAAVQAIAALNESEESGLTEKAVKLV 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKN---------INDEVDEIELKQYFSQCGTI 203
V RA K+ER +R +K+ A LY+N + D++ + L++ F G I
Sbjct: 264 VCRALSKSER--------DREKKKAASLYQNHGRNLYIKHLPDDITDDRLREIFEPFGKI 315
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235
+S IM+ G KG + K+ ++ LR
Sbjct: 316 TSCAIMKEPNGTLKGFAFVCFEDKQHASAALR 347
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQGATVER-MELYVG 88
++ +FS + S KV +S GYG+V + T A I+ L + ++ V
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGRQIRVM 85
Query: 89 PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
IR D +Q S NN++VK LD + + L FS+ G++ S ++ D+ G SKG+G
Sbjct: 86 FSIR--DPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYG 142
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 24/187 (12%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
G ++KNL +IDN ++ FS FG+I + V + G S+GYGFVQ+ + E+A AIEK
Sbjct: 128 GKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEK 187
Query: 75 LQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+ G +++V +I R DR QE + F NLYVKN ++D +E+ + E F +G+ITS
Sbjct: 188 VNGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSH 247
Query: 134 VISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQF 170
I D G SK F G K LYVARA K ER+ + +
Sbjct: 248 KIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINRKL 307
Query: 171 ERMRKER 177
E ++++
Sbjct: 308 EERKRQK 314
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYG----FVQFDSEEAARAAI 185
Query: 166 LRA---------------------QFERMRKERAELYKNINDEVDEIELKQYFSQCGTIS 204
+ + E+ + R KN N++ E +K+ F G I+
Sbjct: 186 EKVNGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 205 SVKIMRTDRGISK 217
S KIM + G SK
Sbjct: 246 SHKIMTDEEGRSK 258
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK+ G
Sbjct: 109 YIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 168
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 169 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 228
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 229 LDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 288
Query: 173 MRKERA 178
++++A
Sbjct: 289 RKRQKA 294
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 163
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 164 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 223
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 224 SHKLMLDEEGRSR 236
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK+ G
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 235
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 236 LDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 295
Query: 173 MRKERA 178
++++A
Sbjct: 296 RKRQKA 301
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 170
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 171 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 231 SHKLMLDEEGRSR 243
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK+ G
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 235
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 236 LDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 295
Query: 173 MRKERA 178
++++A
Sbjct: 296 RKRQKA 301
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 170
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 171 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 231 SHKLMLDEEGRSR 243
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK+ G
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 235
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 236 LDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 295
Query: 173 MRKERA 178
++++A
Sbjct: 296 RKRQKA 301
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 170
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 171 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 231 SHKLMLDEEGRSR 243
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN ++ FS FG+I + V ++G S+GYGFV + + E+A AIEK+ G
Sbjct: 106 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 165
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 166 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 225
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA KAER+ + + E
Sbjct: 226 LDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 285
Query: 173 MRKERA 178
++++A
Sbjct: 286 RKRQKA 291
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + + FS FG I + ++KD +G S+G+G +V ++A R AI
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYG----FVHFDSEEAARAAI 160
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 161 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 220
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 221 SHKLMLDEEGRSR 233
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++KNL +IDN +++ FS FG+I + V +EG S+GYGFV + + E+A AIEK+ G
Sbjct: 113 YIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVNG 172
Query: 78 ATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+++V FI R DR QE + F NLYVKNL ++ TE+ L E F +G+ITS +
Sbjct: 173 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLM 232
Query: 137 KDANGTSKGFG------------------------SKVLYVARAQKKAERKAILRAQFER 172
D G S+ FG +K LYVARA K ER+ + + E
Sbjct: 233 LDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKLEE 292
Query: 173 MRKERA 178
++++A
Sbjct: 293 RKRQKA 298
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 25/133 (18%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+Y+KNL+ + + + E FS FG I + ++KD G S+G+G +V ++A R AI
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYG----FVHFDSEEAARAAI 167
Query: 166 -----LRAQFERM-------RKERAE--------LY-KNINDEVDEIELKQYFSQCGTIS 204
+ +++ R++R + LY KN+++E E L++ F G I+
Sbjct: 168 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 227
Query: 205 SVKIMRTDRGISK 217
S K+M + G S+
Sbjct: 228 SHKLMLDEEGRSR 240
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 46/272 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N FVK L + I+ +L F+K G + S KV + G SKGYGFV
Sbjct: 85 MFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+ T E A A++ + G+ + E+ V PF+RR DR + SF N+Y+KN+ TE
Sbjct: 145 QFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKSFRNIYIKNIAAAATEAD 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSK-------------------------GFGSKV--LY 152
+ +FGK+ SL +S+ A +K G K L
Sbjct: 204 VKAAAEKFGKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEESGLTEKAAKLV 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKN---------INDEVDEIELKQYFSQCGTI 203
V RA K+ER +R +K+ A LY+N + D++ + +L++ F G I
Sbjct: 264 VCRALSKSER--------DREKKKAASLYQNHGRNLYVKHLPDDITDDKLREIFEPFGKI 315
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235
+S IM+ G KG + ++ ++ LR
Sbjct: 316 TSCAIMKEPNGTFKGFAFVCFEDRQHASAALR 347
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQGATVER-MELYVG 88
++ +FS + S KV +S GYG+V + T A I+ L + +++ V
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGLQIRVM 85
Query: 89 PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGS 148
IR D +Q S NN++VK LD + + L F++ G++ S ++ D+ G SKG+G
Sbjct: 86 FSIR--DPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGF 143
Query: 149 KVLYVARAQKKA 160
A K A
Sbjct: 144 VQFETAEGAKAA 155
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN +VKNL IDN L+ FS FG+I S KV ++ +GKS+G+GFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ + ESA AI KL G + +YV PF + A+R +G+ +F N+Y+K++ EE
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAER-NDGTPKNFTNVYIKHIPASWNEE 119
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF 146
+ E+F FG+ITSL + D G F
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRRFAF 147
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 46/272 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N FVK L + I+ +L F+K G + S KV + G SKGYGFV
Sbjct: 85 MFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+ T E A A++ + G+ + E+ V PF+RR DR + SF N+Y+KN+ TE
Sbjct: 145 QFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKSFRNIYIKNIAAAATEAD 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSK-------------------------GFGSKV--LY 152
+ +FGK+ SL +S+ A +K G K L
Sbjct: 204 VKAAAEKFGKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEESGLTEKAAKLV 263
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKN---------INDEVDEIELKQYFSQCGTI 203
V RA K+ER +R +K+ A LY+N + D++ + L++ F G I
Sbjct: 264 VCRALSKSER--------DREKKKAASLYQNHGRNLYVKHLPDDITDDRLREIFEPFGKI 315
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235
+S IM+ G KG + ++ ++ LR
Sbjct: 316 TSCAIMKEPNGTFKGFAFVCFEDRQHASAALR 347
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQGATVER-MELYVG 88
++ +FS + S KV +S GYG+V + T A I+ L + ++ V
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGRQIRVM 85
Query: 89 PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGS 148
IR D +Q S NN++VK LD + + L F++ G++ S ++ D+ G SKG+G
Sbjct: 86 FSIR--DPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGF 143
Query: 149 KVLYVARAQKKA 160
A K A
Sbjct: 144 VQFETAEGAKAA 155
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + S + N F+KNL +IDN L+ F FG+I S KVV + G SKGYGFV
Sbjct: 40 MWSQHDPSLHKSEVSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFV 98
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+ AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 99 HFETQEAVERAIEKMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMD 158
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG + + D +G SKGFG K +Y+
Sbjct: 159 DEHLKDLFGKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYI 218
Query: 154 ARAQKKAERKA 164
RAQKK E++
Sbjct: 219 GRAQKKVEQQT 229
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 54 SKGYGFVQYSTP---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYV 108
S GY +V + P E ALD + + ++G V M P + + S +N+++
Sbjct: 6 SLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHK-------SEVSNIFI 58
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK----- 163
KNL + + L + F FG I S + D NG SKG+G A ++A K
Sbjct: 59 KNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGML 117
Query: 164 ----AILRAQFERMRKERAEL-----------YKNINDEVDEIELKQYFSQCGTISSVKI 208
+ QF+ ++ AEL KN +++D+ LK F + G VK+
Sbjct: 118 LNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKV 177
Query: 209 MRTDRGISKG 218
M + G SKG
Sbjct: 178 MTDESGKSKG 187
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN +VKNL IDN L+ FS FG+I S KV ++ +GKS+G+GFV
Sbjct: 123 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ + ESA AI KL G + +YV F + ADR +GS +F N+Y+K++ TEE
Sbjct: 183 HFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR-SDGSPKNFTNVYIKHIPPSWTEE 241
Query: 119 ILVEKFSEFGKITSLVISKDANG 141
+ E+F FG+ITS + D G
Sbjct: 242 KIREEFGAFGEITSFAMQTDPKG 264
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 43/224 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQY---STPESALDAIE 73
+ +LA ++ L+++F+ G + S +V S KS GY ++ + + E ALD +
Sbjct: 52 YAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLN 111
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ G M + P +RR S N+YVKNLD ++ + L + FS FG I
Sbjct: 112 YSPINGRPCRLMWSHRDPALRR-------SGAGNVYVKNLDRNIDNKALYDTFSLFGNIL 164
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ +G S+GF G K +YVA+ +K A+R
Sbjct: 165 SCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPK 224
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
F + K+I E ++++ F G I+S M+TD
Sbjct: 225 NFTNV------YIKHIPPSWTEEKIREEFGAFGEITSFA-MQTD 261
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R S G+ F+KNL +ID+ L+ FS FG+I S KV G+SKG GFV
Sbjct: 85 MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVATDLNGQSKGIGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS---FNNLYVKNLDDDMTE 117
+ E+A AIEK+ G + +++VG FI R DR G + N ++VKN +D T+
Sbjct: 145 HFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQHYTNVVFVKNFGEDFTD 204
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
E+L F +FG I + V+ KD G SK FG
Sbjct: 205 EMLYNFFEKFGSIAAAVVMKDNEGVSKDFG 234
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 44/231 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE---GKSKGYGFVQYSTPESALDAIEK 74
+V +L ++ L FSK G + S + V ++ +S GY ++ + P A A +
Sbjct: 14 YVGDLLPDVNEADLFDHFSKAGPVLS--ICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 75 LQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ ++ Y+ P +RR S ++++KNL+ + + L + FS FG
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRR-------SRAGHIFIKNLERSIDHKALYDTFSAFGN 124
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERM------------RKER 177
I S ++ D NG SKG G +V +++A AI + + + RK+R
Sbjct: 125 ILSCKVATDLNGQSKGIG----FVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDR 180
Query: 178 AE-----------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
+ KN ++ + L +F + G+I++ +M+ + G+SK
Sbjct: 181 SHTGFNQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSK 231
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FVKN + L+ F KFG I ++ V+ EG SK +GFV + + E+A A++ +
Sbjct: 194 FVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAVHS 253
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNL 106
+ V ++Y + +G+ NN
Sbjct: 254 SIVNGRQVYCSRAHSMPSSLMDGTCCNNC 282
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 95/178 (53%), Gaps = 28/178 (15%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN +DM +E L E F +FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
D +G SKGFG K +YV RAQKK ER+ L+ +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A++++ G + ++YVG ++ +R E
Sbjct: 142 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 172
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F + G
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 152/328 (46%), Gaps = 47/328 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+GN F+KNL++ +DN L+ F FG + S +V+ QEG S+G FV
Sbjct: 104 MFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFV 163
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
QY E A I ++ + + V + R R+ E +F N++ KN+ D++
Sbjct: 164 QYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQKNFTNVFFKNVAADIS 223
Query: 117 EEILVEKFSEFGKITSLVIS-------------KDANGTSK----------GFGSKVLYV 153
+E ++++F FG+I S V+ KD K G LYV
Sbjct: 224 DEDIMKEFENFGEIESKVLKSHDQFGRYGFVAYKDTADAQKAVSELNDKPLGADGTKLYV 283
Query: 154 ARAQKKAER------KAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQ+K+ER + R R + + A LY KN +++V E EL++ F GTI SV
Sbjct: 284 ARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDVTEDELRKMFEAYGTIVSV 343
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK---QGPGLASTIFPVHPTLYQRA--- 260
++++ G S+ + ++ E T ++ M + G L + F Q
Sbjct: 344 RVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPLYVSRFRNKEERAQEVQRQ 403
Query: 261 -------LQVYQAPDFRHGGMIPNGFSP 281
+Q Q + GGM P GF+P
Sbjct: 404 RMMTAQNMQYQQWMTQQGGGMPPMGFNP 431
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 41/236 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKV---VVSQEGKSKGYGFVQ 61
++E+R + +V +L+ + +L+ F+ FG +QS +V +V+Q S GYG+V
Sbjct: 20 SNESRFPHSASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQ--TSLGYGYVN 77
Query: 62 YSTPESALDA-----IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++TPE A E+L+G V M P RR S N+++KNL ++
Sbjct: 78 FATPEDAAKVYEAANFEELKGQPVRIMFSERDPTKRR-------SGVGNIFIKNLSAEVD 130
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLY---------VARAQKKAERKAILR 167
+ L + F FG + S + D G S+G V Y +A+ K +++
Sbjct: 131 NKALYDTFRVFGTVLSCRVLYDQEGNSRGIAF-VQYEDAEVAKQVIAQVNDKKILDKVVK 189
Query: 168 AQFERMRKER---AE---------LYKNINDEVDEIELKQYFSQCGTISSVKIMRT 211
+ + R++R AE +KN+ ++ + ++ + F G I S K++++
Sbjct: 190 VEAYKPRRQRMLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIES-KVLKS 244
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 181/431 (41%), Gaps = 82/431 (19%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ST+D L ++FSKFG + + + ++G+S+GY + Y ESA+
Sbjct: 91 RRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAV 150
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+A+ +L G +++ + V + + R ++ + NLYVKNLD + +E L E F++FG+
Sbjct: 151 EAVRELNGVSIDDCSITVERY-QPHHREEQLKQYTNLYVKNLDPSVDDEKLKEVFAKFGE 209
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRKERAEL------- 180
+TS + N +S GF YVA A +A KA+ L + + KE +L
Sbjct: 210 VTSAKVRDLGNNSSVGFA----YVAYATHEAAAKAVEELDEKSSTLAKEGMKLSVCRFRS 265
Query: 181 --------------------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KN +D V +LK+ F + G SV +M D+
Sbjct: 266 REERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSEKLKELFERFGETVSVSVM-MDKA 324
Query: 215 ISKGHCMAIAQTKRERTSYLRIM----YAKQGPGLASTIFPVHPTLYQRALQVY--QAPD 268
C K + + I GP + + ++ L+ + P
Sbjct: 325 TQVSRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFVTYALRKDARRQTLEDIRNKQPR 384
Query: 269 FRH---GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNG--HANFPMPLMLSNL----- 318
R GG++ +P L M P + M NG N MP+M S +
Sbjct: 385 MRQPPMGGLMSGMMAP----QLGFMNPPT-------MFNGLPFMNPRMPMMPSAMGMGGP 433
Query: 319 QKPSYNYPISQPRAGQA--------------AANNLTNGNHRAAASNENLSSMLVATSPD 364
+P P++Q RA A NLS+ML + P+
Sbjct: 434 MRPMAPAPMNQVRARPAPQRPPMQAMMAPQQQPQLHPQQPQPPVPQGHNLSTMLASLPPE 493
Query: 365 ERKDILGQRLY 375
++K++LG+RLY
Sbjct: 494 QQKNVLGERLY 504
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 20/174 (11%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E +L N +VKNL ++D+ KL ++F+KFG++ S+KV S G+ +V Y+T E+
Sbjct: 177 EEQLKQYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEA 236
Query: 68 ALDAIEKL--QGATV--ERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLD 112
A A+E+L + +T+ E M+L V F R +R +E + NLYVKN D
Sbjct: 237 AAKAVEELDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFD 296
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D +T E L E F FG+ S+ + D A S+ FG +V+ ++ A +AI
Sbjct: 297 DTVTSEKLKELFERFGETVSVSVMMDKATQVSRCFG----FVSFKEQSAASQAI 346
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ KL+ F + G + S +V V + KS GYG+V + P A A+++
Sbjct: 12 WVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ-A 70
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G + + + R D + S N+ VK L + L E FS+FG++T++ ++
Sbjct: 71 GVKLGTKHIRIAKIQR--DPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAIGLA 128
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERK-----------AILRAQ---FERMRKERAELY- 181
D G S+G+ + +A R+ + R Q E K+ LY
Sbjct: 129 TDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVERYQPHHREEQLKQYTNLYV 188
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN++ VD+ +LK+ F++ G ++S K+
Sbjct: 189 KNLDPSVDDEKLKEVFAKFGEVTSAKV 215
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 2/136 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGF 59
MWS + R SG+GN FVKNL IDN +L+ FS FG+I S KVV +E G SKGYG+
Sbjct: 87 MWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGY 146
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
V Y T E+A AI+KL G ++ E+ VG F+RR R + + NL++KN+ + ++
Sbjct: 147 VHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTRPDQ-EVYTNLFIKNMPYEWDDKR 205
Query: 120 LVEKFSEFGKITSLVI 135
L +F+EFG+I S +
Sbjct: 206 LEAEFAEFGEIVSASV 221
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 13/119 (10%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCG 201
K L+V RAQKK+ER+A LR+++E + ER LY KN++D V + L+ F G
Sbjct: 317 KALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMG 376
Query: 202 TISSVKIMRTDR-GISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
TI+S KIMR + S+G T + T + M K G P++ +L QR
Sbjct: 377 TITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGK-----PIYVSLAQR 430
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 48/168 (28%)
Query: 49 SQEGKSKGYGFVQYSTPESAL-------DAIEKL--QGATVERMELYVGPFIRRADRIQE 99
S E +S G+GFV ++T E+A D + K+ G VE+ L+VG ++++R E
Sbjct: 275 STEPESLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKA-LFVGRAQKKSERQAE 333
Query: 100 GSS------------FN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSK 144
S F NLYVKNLDD +T+++L ++F G ITS I +DA S+
Sbjct: 334 LRSKYEAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSR 393
Query: 145 GFG-----------------------SKVLYVARAQKKAERKAILRAQ 169
GFG K +YV+ AQ++ R+A L AQ
Sbjct: 394 GFGFVCFSTPEDATRAVNEMSGKIVAGKPIYVSLAQRREVRRAQLEAQ 441
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 56/263 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R + +GN FVKNL +DN L+ FS FG+I S KV ++G SKGYG+V
Sbjct: 260 MWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF-EKGISKGYGYV 318
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T +SA AIEK+ G + + V F+ + +R + N ++ +N D+ +T EIL
Sbjct: 319 HFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVE---NKVFFRNADESITIEIL 375
Query: 121 VEKFSE-FGKITSLVISKDANGTSKGFG-------------------------------- 147
++ S FG+I S ++ DANG SKG G
Sbjct: 376 QQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVS 435
Query: 148 ---------SKVLYVARAQKKAERKAILRAQFERMRKERAEL---YKNINDEVDEIELKQ 195
K + + R + K ER F RK+ +L NI++ +D +K+
Sbjct: 436 SNGGTIEINGKPITIDRIKSKVER-------FTEYRKKTTDLSLFINNIDESIDRDLIKE 488
Query: 196 YFSQCGTISSVKIMRTDRGISKG 218
F++ GTI +KI++ + +KG
Sbjct: 489 EFAKHGTIIGIKIVQDENARNKG 511
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 34/175 (19%)
Query: 17 AFVKNLASTIDNLKLHQIFS-KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA---- 71
F +N +I L Q S +FG+I+S + GKSKG G V++ E A
Sbjct: 361 VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTES 420
Query: 72 ----IEKLQGAT-----------------VERMELYVGPFIRRADRIQEGSSFNNLYVKN 110
I + G T ++R++ V F + + S L++ N
Sbjct: 421 GALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLS----LFINN 476
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+D+ + +++ E+F++ G I + I +D N +KGFG +++ ++ + +KA+
Sbjct: 477 IDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFG----FISFSEIQEAQKAL 527
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+ N+ +ID + + F+K G I K+V + ++KG+GF+ +S + A A++ L G
Sbjct: 473 FINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNG 532
Query: 78 ATVERMELYV 87
T ++ V
Sbjct: 533 FTFGSKQIQV 542
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 95/178 (53%), Gaps = 28/178 (15%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN +DM +E L E F ++G S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
D +G SKGFG K +YV RAQKK ER+ L+ +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F K+G S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A++ + G + +YVG ++ +R E
Sbjct: 142 QKAVDXMNGKELNGKXIYVGRAQKKVERQTE 172
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F + G
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKEVFGKYGPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 3/137 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN +VKNL IDN L+ FS FG+I S KV ++ +GKS+G+GFV
Sbjct: 122 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS--SFNNLYVKNLDDDMTEE 118
+ + ESA AI KL G + +YV F + ADR +GS +F N+Y+K++ TEE
Sbjct: 182 HFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR-SDGSPKNFTNVYIKHIPPSWTEE 240
Query: 119 ILVEKFSEFGKITSLVI 135
+ E+F FG+ITS +
Sbjct: 241 KIREEFGAFGEITSFAM 257
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 42/217 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQY---STPESALDAIE 73
+ +LA ++ L+++F+ G + S +V S KS GY ++ + + E ALD +
Sbjct: 51 YAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLN 110
Query: 74 --KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ G M + P +RR S N+YVKNLD ++ + L + FS FG I
Sbjct: 111 YSPINGRPCRLMWSHRDPALRR-------SGAGNVYVKNLDRNIDNKALYDTFSLFGNIL 163
Query: 132 SLVISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRA 168
S ++ +G S+GF G K +YVA+ +K A+R
Sbjct: 164 SCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPK 223
Query: 169 QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISS 205
F + K+I E ++++ F G I+S
Sbjct: 224 NFTNV------YIKHIPPSWTEEKIREEFGAFGEITS 254
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 28/175 (16%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN +DM +E L E F FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
D +G SKGFG K +YV RAQKK ER+ L+
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F FG S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G + ++YVG ++ +R E
Sbjct: 142 QKAVXEMNGKELNGKQIYVGRAQKKVERQTE 172
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F G
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKELFGXFGPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 28/178 (15%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN +DM +E L + F +FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQF 170
D +G SKGFG K +YV RAQKK ER+ + +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A++++ G + ++YVG ++ +R E
Sbjct: 142 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 172
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK F + G
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R S +GN FVKNL +DN L FS +G+I S K+ ++G SKGYG+V
Sbjct: 206 MWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSCKIEY-EKGISKGYGYV 264
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ ES+ AI K+ G + + V PF+ + +R +E + N L++KN+D+++T E+L
Sbjct: 265 HFENQESSEQAILKVNGTILLGKPIIVEPFVSKVERFKEKKNENKLFIKNIDENVTSEML 324
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG 147
++ S FG+I S I D G KG
Sbjct: 325 QQELSRFGEIESCNIRTDPTGKPKGLA 351
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 45/169 (26%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+KN+ + + L Q S+FG+I+S + GK KG FV++ T E A +E +
Sbjct: 311 FIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLESTEA 370
Query: 78 ATV-------ERMELYVGPFIRRADRI--------------------------QEGSSFN 104
T+ +R++ V I + ++ Q GS+
Sbjct: 371 ITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQNGSTSQ 430
Query: 105 ------NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
L++ N+D ++ +EI+ E+F++ G I + I S+GF
Sbjct: 431 QQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFA 473
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+ N+ +D + + F+K G+I K+ KS+G+ F+ YST E A AIEK+ G
Sbjct: 439 FINNIDMEVDKEIIREEFAKHGNILGIKI------KSRGFAFLTYSTQEEAAVAIEKMNG 492
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 176/427 (41%), Gaps = 81/427 (18%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ++D L ++FSK+G + + + ++ G+S+GY + Y ESA+
Sbjct: 91 RRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAIGLATNENGESRGYARISYEKEESAI 150
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
A++++ G ++ + V + + R ++ F NLYVKNLD + +E L E FS FG+
Sbjct: 151 QAVQEVNGMVIDDCAITVERY-QPHHREEQLKQFTNLYVKNLDPSVNDEKLKEVFSAFGE 209
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRKERAEL------- 180
+TS + + GF YVA A +A KA+ L + + KE +L
Sbjct: 210 VTSAKVRDLGANQTVGFA----YVAYATHEAAAKAVEELDEKESPLAKEGMKLSVCRFRS 265
Query: 181 --------------------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KN +D V LK+ F +CG SV +M DR
Sbjct: 266 RDERQRERERLRRERQQQHSKYPNLYVKNFDDTVTSERLKELFERCGETVSVSVM-MDRA 324
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQV----YQAPDFR 270
C K E+++ R + G ST P AL+ D R
Sbjct: 325 TRVSRCFGFVSFK-EQSAASRAIQELHG----STALGPRPLFVTYALRKDARRQTLEDMR 379
Query: 271 HGGMIPNGFSPPPPSP--------LFLMAPDSVTQYRGAMMNG-------HANFPMPLML 315
+ P PP S L M P AM NG + P P+ +
Sbjct: 380 NKQ--PRMRQPPMGSLMGGMMGPQLGFMGPQ-------AMFNGVPFVNPRMSMMPTPMGM 430
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNG-------NHRAAASNENLSSMLVATSPDERKD 368
+P P++Q RA A+ +NLS++L +P+++K+
Sbjct: 431 GGQLRPMGPTPMNQVRARPMPQRPPMQPIMAPPPQPQSLASQGQNLSTVLANLTPEQQKN 490
Query: 369 ILGQRLY 375
+LG+RLY
Sbjct: 491 VLGERLY 497
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E +L N +VKNL ++++ KL ++FS FG++ S+KV ++ G+ +V Y+T E+
Sbjct: 177 EEQLKQFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEA 236
Query: 68 ALDAIEKLQGA----TVERMELYVGPFIRRADRIQEG-----------SSFNNLYVKNLD 112
A A+E+L E M+L V F R +R +E S + NLYVKN D
Sbjct: 237 AAKAVEELDEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFD 296
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D +T E L E F G+ S+ + D A S+ FG +V+ ++ A +AI
Sbjct: 297 DTVTSERLKELFERCGETVSVSVMMDRATRVSRCFG----FVSFKEQSAASRAI 346
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 33/214 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 12 WVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ-A 70
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G + + + R D + S N+ VK L + L E FS++G++T++ ++
Sbjct: 71 GVKLGSKHIRIAKIQR--DPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAIGLA 128
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQ---------------------FERMRK 175
+ NG S+G+ AR + E AI Q E K
Sbjct: 129 TNENGESRGY-------ARISYEKEESAIQAVQEVNGMVIDDCAITVERYQPHHREEQLK 181
Query: 176 ERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+ LY KN++ V++ +LK+ FS G ++S K+
Sbjct: 182 QFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKV 215
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T ++A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFG 128
+E L E FS++G
Sbjct: 204 DERLKETFSKYG 215
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 42/219 (19%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G + S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD + + L + FS F
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+ + ++V R + + ER+A
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREA 181
Query: 165 ILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGT 202
L A+ KE +Y KN +++D+ LK+ FS+ G
Sbjct: 182 ELGAK----AKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 87 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ T E+A +AI+K+ G + +++VG F+ R++R Q+ F N+Y+KN DD+
Sbjct: 147 HFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLD 206
Query: 117 EEILVE 122
+E L E
Sbjct: 207 DEKLRE 212
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 33/208 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTP---ESAL 69
+ + +V +L + + L + FS G + S +V + S GY +V + P E AL
Sbjct: 12 VASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERAL 71
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD + + + + FS F
Sbjct: 72 DTMNFDMVKGRPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKAMYDTFSAF 124
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQFER 172
G I S ++ D SKG+G A A +K + R++ E+
Sbjct: 125 GNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREK 184
Query: 173 MRKERAELY-----KNINDEVDEIELKQ 195
++A + KN D++D+ +L++
Sbjct: 185 QLGQKARRFMNVYIKNFGDDLDDEKLRE 212
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 23/141 (16%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGT-SKGFGSKVLYVARAQKKAERKA 164
LYV +L +D+TE +L EKFS G + S+ + +D S G+ YV Q +A
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYA----YVNFQQPVDAERA 70
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D + FS G I S
Sbjct: 71 LDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSC 130
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K+ + SKG+ +T+
Sbjct: 131 KVATDEESNSKGYGFVHFETE 151
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 184/434 (42%), Gaps = 86/434 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG+ N FVK L + ++ +L F+K G + S KV + G SKGYGFV
Sbjct: 85 MFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFV 144
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNLDDDMTEEI 119
Q+ T + A A+E + G+ + E+ V PF+RR DR + SF N+Y+KNL + E
Sbjct: 145 QFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKSFRNIYIKNLKATVAEAD 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL------------- 166
+ FGK+ SL +S+ A F +K VA + +A KAI
Sbjct: 204 VKTTVETFGKVNSLFLSEHA-----PFPTKFALVAFEEHEAAVKAIAALNESEESGLTEK 258
Query: 167 -----------RAQFERMRKERAELYKN---------INDEVDEIELKQYFSQCGTISSV 206
+++ +R +K+ A LY+N + D++ + L++ F+ G I+S
Sbjct: 259 AAKLVVCRALSKSERDREKKKAASLYQNHGRNLYVKHLPDDITDDRLREIFAPFGKITSC 318
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLR------------IMYAKQGPGLASTIFPVHP 254
IM+ G KG + ++ ++ LR ++Y Q I
Sbjct: 319 AIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGHSLDNSKKLLYVSQAEQKDMRI----- 373
Query: 255 TLYQRALQVYQAPDFRHGGMIP--NGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANF--- 309
R LQ +A M P N F P F + G F
Sbjct: 374 ----RLLQQRRAAMRHQSRMAPPMNTFPQQWPRHPFSHMAPPMMPPPPPPNMGMPQFMSG 429
Query: 310 PM---PLMLSNL-----QKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVAT 361
PM P+M +L +P Y +QPR Q +G + LS++
Sbjct: 430 PMIRRPVMEPHLLQGEPMRPPNRY--TQPRE-QYPPQQRQDG-----VDMDYLSTL---- 477
Query: 362 SPDERKDILGQRLY 375
SP+++K+ LG+ LY
Sbjct: 478 SPEQQKNYLGELLY 491
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAIEKLQ--GATVERMELYV 87
++ +FS + S KV +S GYG+V + TP A I+ L G T R ++ V
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKVIDALNYTGITPGR-QIRV 84
Query: 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
IR D IQ S NN++VK LD + + L F++ G++ S ++ D+ G SKG+G
Sbjct: 85 MFSIR--DPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYG 142
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +JDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R F N+Y+KN +DM +E L E F FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
D +G SKGFG K +YV RAQKK ER+ L+
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELK 174
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F FG S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G ++YV ++ +R E
Sbjct: 142 QKAVXEMNGKEXNGKQIYVXRAQKKVERQTE 172
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F G
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR----AKEFTNVYIKNFGEDMDDERLKELFGXFGPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 179/439 (40%), Gaps = 100/439 (22%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L T+D L ++FSK+G + + + ++G+S+GY + Y ESA+
Sbjct: 91 RRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAV 150
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
DA+ +L G +++ + V + + R ++ + NLYVKNLD + +E L E FS FG+
Sbjct: 151 DAVRELNGVSIDDCAITVERY-QPHHREEQLKQYTNLYVKNLDPSVDDEKLKEVFSPFGE 209
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRKERAEL------- 180
+TS + A + GFG YVA A +A KA+ L + + KE +L
Sbjct: 210 VTSAKVRDLAGRPTVGFG----YVAYATHEAAAKAVEELDDKESPLAKEGMKLSVCRFRS 265
Query: 181 --------------------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KN +D V LK F G SV +M D+
Sbjct: 266 REERKRERERLRRERQQQHSKYPNLYVKNFDDTVTSERLKALFDPFGETVSVSVM-MDKA 324
Query: 215 ISKGHCMAIAQTKRERTSY----------------LRIMYAKQGPGLASTIFPV---HPT 255
C K + ++ L + YA + T+ + P
Sbjct: 325 TKVSRCFGFVSFKEQSSAAQAIQELHGSTALGPRPLFVSYALRKDARRQTLEDMRNKQPR 384
Query: 256 LYQRA------------LQVYQAPDFRHGGMIPNGFSPPPPS------PLFLMAPDSVTQ 297
+ Q L P +G N P PS P+ M P + Q
Sbjct: 385 MRQPPMGGLMGGMMGPQLSFMNPPAMFNGMHFMNTRMPMMPSTMGMGGPMRPMGPTPMNQ 444
Query: 298 YRGAMMNGHANFPMPLMLSNLQKPSYNYP-ISQPRAGQAAANNLTNGNHRAAASNENLSS 356
R G PM M++ Q+ ++P I QP Q +NLS+
Sbjct: 445 VRAR--PGPQRPPMQSMMAPQQQ---SHPQIPQPPVAQG----------------QNLST 483
Query: 357 MLVATSPDERKDILGQRLY 375
+L + +PD++K++LG+RLY
Sbjct: 484 VLASMTPDQQKNVLGERLY 502
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 16/156 (10%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E +L N +VKNL ++D+ KL ++FS FG++ S+KV + G+G+V Y+T E+
Sbjct: 177 EEQLKQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKVRDLAGRPTVGFGYVAYATHEA 236
Query: 68 ALDAIEKLQGA----TVERMELYVGPFIRRADRI-----------QEGSSFNNLYVKNLD 112
A A+E+L E M+L V F R +R Q+ S + NLYVKN D
Sbjct: 237 AAKAVEELDDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKYPNLYVKNFD 296
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
D +T E L F FG+ S+ + D A S+ FG
Sbjct: 297 DTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFG 332
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 12 WVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ-A 70
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G + + + R D + S N+ VK L + L E FS++G++T++ ++
Sbjct: 71 GVKLGTKHIRIAKIQR--DPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAIGLA 128
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERK---------AILRAQF-----ERMRKERAELY- 181
D G S+G+ + A R+ AI ++ E K+ LY
Sbjct: 129 TDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVERYQPHHREEQLKQYTNLYV 188
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN++ VD+ +LK+ FS G ++S K+
Sbjct: 189 KNLDPSVDDEKLKEVFSPFGEVTSAKV 215
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R S +GN FVKNL +DN L FSKFG+I S K+ ++G SKGYG+V
Sbjct: 214 MWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSCKIEY-EKGVSKGYGYV 272
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ T ES+ AI+ + G + + V F+ + +R +E + + L++KN+D+ T E L
Sbjct: 273 HFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNE-HKLFIKNIDELATVEQL 331
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG 147
+ S FG+I S +I D NG SKG G
Sbjct: 332 QAELSRFGEIESCIIRLDNNGKSKGLG 358
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 31/224 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG---KSKGYGFVQYSTPESALDAIEK 74
+V +LA ++ + L ++FSK G + + V ++ +S GY +V + A A++
Sbjct: 141 YVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERALDT 200
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L + + + +R D + S+ N++VKNLD + +L + FS+FG I S
Sbjct: 201 LNYSQIMGRPCRIMWSLR--DPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSCK 258
Query: 135 ISKDANGTSKGFGSKVLYVA-RAQKKAER------------KAILRAQF----ERMRK-- 175
I + G SKG+G YV Q+ ++R K I QF ER ++
Sbjct: 259 IEYEK-GVSKGYG----YVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKN 313
Query: 176 ERAELYKNINDEVDEIE-LKQYFSQCGTISSVKIMRTDRGISKG 218
E KNI DE+ +E L+ S+ G I S I + G SKG
Sbjct: 314 EHKLFIKNI-DELATVEQLQAELSRFGEIESCIIRLDNNGKSKG 356
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+ N+ +ID + + F+K G I K+V + GK++G+GF+ YST E A AIEK+ G
Sbjct: 462 FIHNIDESIDKEVIREEFAKHGTILGIKIV-QENGKNRGFGFLSYSTQEEANIAIEKMNG 520
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA---LDAIEK 74
F+KN+ +L S+FG+I+S + + GKSKG GFV++ + E A +D E
Sbjct: 318 FIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMDNPEP 377
Query: 75 LQ 76
+Q
Sbjct: 378 IQ 379
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R SG GN F+KN+ DN L ++FS+FG I S K+ + + +S GYGFV
Sbjct: 112 MWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKILSCKIALDENKRSMGYGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS---FNNLYVKNLDDDMTE 117
Y + + AIEK+ ++ +++VGPFI + R +S F N+Y+KN+
Sbjct: 172 HYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNSKLRFTNVYIKNILFQNCN 231
Query: 118 EILVEKFSE-FGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EI ++ E FG ITS+ I K AN GF K LYV
Sbjct: 232 EIYIKDLFEIFGPITSIFIPK-ANEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYV 290
Query: 154 ARAQKKAERKAILRAQFERMRKERAELYKNI 184
+A+ + ER+ L +F + + YK +
Sbjct: 291 GKAETRIERQRRLAKKFLDKKMSKVCFYKKL 321
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L+ ++ L +IFSK G + S ++ G S+GY +V + P+ A A + L
Sbjct: 38 YVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKLLN 97
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFN-----NLYVKNLDDDMTEEILVEKFSEFGKIT 131
T E L+ P R +Q+ S NL++KN+ + L + FS+FGKI
Sbjct: 98 YYTDE--TLHYKPL--RIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKIL 153
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
S I+ D N S G+G +V ++K +KAI
Sbjct: 154 SCKIALDENKRSMGYG----FVHYKEEKDSKKAI 183
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW N+ R SG GN F+KNL LH +FS++G+I SSK+ EG S GYGFV
Sbjct: 81 MWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFV 140
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRA--DRIQEGSSFNNLYVKNL-DDDMTE 117
Y + A+ AI L G + + V F+ ++ +RI F N+YVKNL D ++E
Sbjct: 141 HYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDKLSE 200
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
+++ F FGKITS+ I N KGF
Sbjct: 201 KVIFNLFGVFGKITSIFIPLWYNSIPKGFA 230
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 96/179 (53%), Gaps = 38/179 (21%)
Query: 30 KLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89
KL ++F +FG+I S+KV++ + GKSKG+GFV + E+A A++ L G + +LYVG
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 90 FIRRADRIQE-GSSFN--------------NLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
++ +R+ E S F NLYVKNLDD + + L ++F FG ITS
Sbjct: 69 AQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAK 128
Query: 135 ISKDANGTSKGF-----------------------GSKVLYVARAQKKAERKAILRAQF 170
+ D+N SKGF GSK LYVA AQ+K +RKA L +Q+
Sbjct: 129 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQY 187
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 68/152 (44%), Gaps = 31/152 (20%)
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L E F EFG+ITS + D NG SKGFG + LYV RA
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 157 QKKAERKAILRAQFERMRKERAELY--------KNINDEVDEIELKQYFSQCGTISSVKI 208
QKK ER LR+ FE+ R ER+ Y KN++D +D+ LKQ F G I+S K+
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
M SKG E T + M K
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGK 161
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +ID+ +L Q F FG+I S+KV+ +SKG+GFV +S PE A A+ ++
Sbjct: 99 NLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 158
Query: 76 QGATVERMELYVGPFIRRADR 96
G LYV R+ DR
Sbjct: 159 NGKICGSKPLYVALAQRKEDR 179
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 28/175 (16%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AIEK+ G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 80 VERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
+ +++VG F R +R E F N+Y+KN +DM +E L E F S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILR 167
D +G SKGFG K +YV RAQKK ER+ L+
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F S KV+ + GKSKG+GFV + E A
Sbjct: 82 ARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDA 141
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A++++ G + ++YVG ++ +R E
Sbjct: 142 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 172
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 29/134 (21%)
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------------- 147
KNLD + + L + FS FG I S + D NG SKG+G
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 148 --SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTIS 204
+ ++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKELFGXXXPAL 115
Query: 205 SVKIMRTDRGISKG 218
SVK+M + G SKG
Sbjct: 116 SVKVMTDESGKSKG 129
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 133/258 (51%), Gaps = 42/258 (16%)
Query: 36 SKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI---- 91
S FG+I S KVV G SKGY +V + + +A AI + G + ++YVG F
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 92 RRAD-RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--- 147
R A+ R ++ ++F N++VKN+ DD+ +E L E F E+G S+ + +DA+G SKGFG
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 148 --------------------SKVLYVARAQKKAERKAILRAQF------ERMRKERAELY 181
KVLYV RAQKK ER A LR +F E+ R +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 182 -KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
KN+++ +++ +LK+ FS G+IS K+M + G KG + + E T + M
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM--- 235
Query: 241 QGPGLASTIFPVHPTLYQ 258
G + S P+H TL Q
Sbjct: 236 NGRVVGSK--PLHVTLGQ 251
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L
Sbjct: 74 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 133
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNN--------------LYVKNLDDDMTEEILV 121
G +++ LYVG ++ +R+ E +Y+KNLD+ + +E L
Sbjct: 134 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 193
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG 147
E+FS FG I+ + + G KGFG
Sbjct: 194 EEFSSFGSISRAKVMMEV-GQGKGFG 218
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 28/197 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + SG GN F+KNL D+ L ++F FG I S KV + + G S GYGFV
Sbjct: 117 MWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFV 176
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG---SSFNNLYVKNLD-DDMT 116
+ +++ AIEK G + +++VGPF+ R DR G + F N+Y+KN+ ++
Sbjct: 177 HFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKNFGMTKTGFTNIYIKNISPENCN 236
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E + + F FGKITS+ I K+ N T KGF + LYV
Sbjct: 237 ETFIKDLFDIFGKITSIYIPKNNNFT-KGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYV 295
Query: 154 ARAQKKAERKAILRAQF 170
+A+ K ER+ L+ +F
Sbjct: 296 GKAETKIERQRHLQKKF 312
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 175/424 (41%), Gaps = 77/424 (18%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L T+D L ++FSK+G + + + +++G+S+GY + Y ESA+
Sbjct: 91 RRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAI 150
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+A++ + G T++ + V + + R ++ + NLYVKNLD + +E L E FS +G+
Sbjct: 151 EAVQGVNGMTIDDCPITVERY-QPHHREEQLKLYTNLYVKNLDPSVGDEKLKEVFSAYGE 209
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRKERAEL------- 180
+TS + S GF YVA A +A KA+ L + + KE +L
Sbjct: 210 VTSAKVRDLGGKMSVGFA----YVAYATHEAAVKAVEELDDKENPLAKEGMKLSVCRFRS 265
Query: 181 --------------------------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KN +D V LK+ F + G SV +M D+
Sbjct: 266 REERQRERERLRRERQQLYSKYPNLYVKNFDDTVTSERLKELFERFGETVSVSVM-VDKA 324
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQV----------- 263
C K E+ S R + G ST P AL+
Sbjct: 325 TKVSRCFGFVSFK-EQNSASRAIQELHG----STALGPRPLFVTYALRKDARRQTLEDMR 379
Query: 264 YQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNG--HANFPMPLM-----LS 316
+ P R M P F+ P AM NG N MP+M +
Sbjct: 380 NKQPRMRQTPMGGLMGGMMGPQLGFMNPP--------AMFNGVPFMNTRMPMMPNAMGMG 431
Query: 317 NLQKPSYNYPISQPRAGQA-----AANNLTNGNHRAAASNENLSSMLVATSPDERKDILG 371
+P P++Q RA A + +NLS+ML +P+++K++LG
Sbjct: 432 GPMRPLGPTPMNQVRARPAPQRPPMQPMMPPQQQPPVPQGQNLSTMLANLTPEQQKNVLG 491
Query: 372 QRLY 375
+RLY
Sbjct: 492 ERLY 495
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E +L N +VKNL ++ + KL ++FS +G++ S+KV S G+ +V Y+T E+
Sbjct: 177 EEQLKLYTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKVRDLGGKMSVGFAYVAYATHEA 236
Query: 68 ALDAIEKLQGA----TVERMELYVGPFIRRADRIQEG-----------SSFNNLYVKNLD 112
A+ A+E+L E M+L V F R +R +E S + NLYVKN D
Sbjct: 237 AVKAVEELDDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKYPNLYVKNFD 296
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D +T E L E F FG+ S+ + D A S+ FG +V+ ++ + +AI
Sbjct: 297 DTVTSERLKELFERFGETVSVSVMVDKATKVSRCFG----FVSFKEQNSASRAI 346
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ KL+ F + G + S +V V + KS GYG+V + P A A+++
Sbjct: 12 WVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ-A 70
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G + + + R D + S N+ VK L + L E FS++G++T++ ++
Sbjct: 71 GVKLGSKHIRIARIQR--DPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAIGLA 128
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERM----RKERAE 179
+ G S+G+ AR + E AI Q ER R+E+ +
Sbjct: 129 TNEKGESRGY-------ARISYEKEESAIEAVQGVNGMTIDDCPITVERYQPHHREEQLK 181
Query: 180 LY-----KNINDEVDEIELKQYFSQCGTISSVKI 208
LY KN++ V + +LK+ FS G ++S K+
Sbjct: 182 LYTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV 215
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+KFG+I S +V+ EGKSKG+GFV ++ PE A A++ L
Sbjct: 154 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 212
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+T+E ++L+V ++++R E + NLYVKNLD+ + ++
Sbjct: 213 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 272
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F +G ITS + D NG SKGFG SK LYVA A
Sbjct: 273 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 332
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 333 QRKEDRRAQLASQY 346
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 127/287 (44%), Gaps = 65/287 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTP---ESALDAI- 72
+V +L ++ L + FS G + S +V + S GY +V + P E A+D +
Sbjct: 35 YVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Query: 73 -EKLQGATVERM----------------------ELYVGPFIRRADRIQE----GSSFNN 105
E L G + M +++VG F RA R +E F N
Sbjct: 95 FEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQFTN 154
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------------ 147
+YVKN D +E L + F++FG ITS + G SKGFG
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALH 213
Query: 148 -SKV------LYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIEL 193
S + L+V RAQKK+ER A L+ + E+ + ER + Y KN+++ VD+ L
Sbjct: 214 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 273
Query: 194 KQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+ F G I+S K+M + G SKG + E TS + M +K
Sbjct: 274 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 320
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 30/182 (16%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
L+ GN +V+ L I L +IF FG+I SSK+V + G+SKGYGF+ YS SA D
Sbjct: 125 LTHPGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADD 184
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMTEEILVEKFSE 126
AI KL G V +LY+ I + +RIQ E S+F NLY+KNL D T + F++
Sbjct: 185 AISKLNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAK 244
Query: 127 FGKITSLVIS--KDANGTSKGFG------------------------SKVLYVARAQKKA 160
FG+I+S + D + TSK FG ++ L V+RAQ++
Sbjct: 245 FGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRD 304
Query: 161 ER 162
ER
Sbjct: 305 ER 306
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +V+NLA +ID+ LH F+ FG I S+K++ + EG+S+GYGFV + T A A+ +
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 76 QGATVERMELYV 87
G + L+V
Sbjct: 486 HGNVLHGQMLHV 497
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G S+GY FV
Sbjct: 76 MWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ GA ++ L+VG F R DR E + F N+YVKN DDM
Sbjct: 135 HFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMD 194
Query: 117 EE 118
+E
Sbjct: 195 DE 196
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG-SKVLYVARAQKKAERK 163
LYV +L D+TE++L +KFS G + S+ I +D S G+ L +A AQK +
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 164 --AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKIMR 210
+++ + R+ + + Y KN++ +D L ++FS G I S K+M
Sbjct: 64 NFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 123
Query: 211 TDRGISKGHCMAIAQTK 227
D+G S+G+ Q +
Sbjct: 124 DDQG-SRGYAFVHFQNQ 139
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 18/138 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQY---STPESALDA 71
+V +L++ + L + FS G + S ++ +V++ +S GY +V + + + ALD
Sbjct: 5 YVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTR--RSLGYAYVNFLKLADAQKALDT 62
Query: 72 I--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ + ++G + M ++R+ S N+++KNLD + + L E FS FGK
Sbjct: 63 MNFDMIKGKPIRLMWSQRDAYLRK-------SGIGNVFIKNLDKSIDNKTLYEHFSAFGK 115
Query: 130 ITSLVISKDANGTSKGFG 147
I S + D G S+G+
Sbjct: 116 ILSSKVMSDDQG-SRGYA 132
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++ID+ L+ FS FG+I S KVV + G SKGY FV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 135 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 194
Query: 117 EE 118
+E
Sbjct: 195 DE 196
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 42/207 (20%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L S + L++ FS G + S +V +S GY +V + P E AL
Sbjct: 1 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 60
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G + M P +R+ S N+++KNLD+ + ++ L + FS F
Sbjct: 61 DTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDNSIDDKALYDTFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G I S + D NG SKG+ + ++V R + + ER+A
Sbjct: 114 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 172
Query: 165 ILRAQFERMRKERAELY-KNINDEVDE 190
L A+ KE +Y KN +EVD+
Sbjct: 173 ELGAK----AKEFTNVYIKNFGEEVDD 195
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 59
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN+++ +D+ L FS G I S
Sbjct: 60 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSC 119
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 120 KVVCDENG-SKGYAFVHFETQ 139
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 95/188 (50%), Gaps = 38/188 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
G + ++VG ++ +R E F NLY+KNLDD + +E L
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 122
Query: 122 EKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQK 158
++FS FG ITS + + +G SKGF GSK LYVA AQ+
Sbjct: 123 KEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 181
Query: 159 KAERKAIL 166
K ERKA L
Sbjct: 182 KEERKAHL 189
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 99/187 (52%), Gaps = 36/187 (19%)
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------------- 147
F N+Y+KN +++ +E L E FS+FGK S+ + +D NG SKGFG
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 148 --------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIE 192
K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPV 252
L++ FS G+I+S K+M D G SKG + E T + M G + S P+
Sbjct: 121 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM---NGRIVGSK--PL 174
Query: 253 HPTLYQR 259
+ L QR
Sbjct: 175 YVALAQR 181
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 42/235 (17%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKNL + + L FS FG+I S KV + +GKSKGYGFVQ+ ++A I+
Sbjct: 11 GNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIKN 70
Query: 75 LQ-------GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
G +ELY P +++ + + + F N ++KN D TE+ L+E +
Sbjct: 71 FNNLNGLMLGGNKIAVELY-NPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLELLVRY 129
Query: 128 GKITSLVISKDANGTSKGF-----------------------------GSKVLYVARAQK 158
GK+TSL +G KGF G + Y+ + Q+
Sbjct: 130 GKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQKGQR 189
Query: 159 KAERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K ER LR FE++ + R LY NI + EL F + G+I+S+ +
Sbjct: 190 KEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGAEELNNIFKEFGSITSMSV 244
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 18/149 (12%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN +L ++ ++G + S + +GK KG+ F + + ESAL+AI L
Sbjct: 107 NCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNL 166
Query: 76 QGA-----TVERME-LYVGPFIRRADRIQE-----------GSSF-NNLYVKNLDDDMTE 117
GA + + E Y+ R+ +R +E G S+ NLY+ N+ +
Sbjct: 167 HGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGA 226
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGF 146
E L F EFG ITS+ + D + K +
Sbjct: 227 EELNNIFKEFGSITSMSVGIDGANSQKQY 255
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ +L+ IF +FG I S V + K Y ++ YSTPE A A+E+
Sbjct: 214 NLYITNIPEGFGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERG 273
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ L V F + +R++E
Sbjct: 274 NEIYLDGNRLQVSYFKNKLERMKE 297
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 47/211 (22%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R+ N ++KN D L +F K+G ++S V+ ++G S+G+GFV Y + E A
Sbjct: 29 RVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQ 88
Query: 70 DAIEKLQGATVERME-----LYVGPFIRRADRIQEGSS------------FN--NLYVKN 110
A+E + G +E LYVG ++ +R QE F NLYVKN
Sbjct: 89 AAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKN 148
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGT----SKGF-------------------- 146
LDD++T++ L E F+ +G ITS I D + S+GF
Sbjct: 149 LDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNG 208
Query: 147 ---GSKVLYVARAQKKAERKAILRAQF-ERM 173
G+K LYVA AQ++ +RKA L AQ+ +RM
Sbjct: 209 RIVGTKPLYVALAQRREDRKAHLTAQYMQRM 239
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 45/176 (25%)
Query: 84 ELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA 139
+++VG F+ R++RI++ F N+Y+KN D E+ L F ++G + S+ + +D
Sbjct: 10 KVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDR 69
Query: 140 NGTSKGFG----------------------------SKVLYVARAQKKAERKAILRAQFE 171
+G S+GFG + +LYV RAQKK ER+ LR Q+E
Sbjct: 70 DGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYE 129
Query: 172 RMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHC 220
+ ++ER + + KN++D V + EL++ F+ GTI+S KIM S G C
Sbjct: 130 QQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIM------SDGEC 179
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 19/141 (13%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNLA ID+++L + F++FG I S+KV+ +++G+SKG+GFV + +PE A
Sbjct: 56 RYQGV-NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAA 114
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR--------IQEGSSFN----------NLYVKNL 111
AI ++ +E LYV ++ DR +Q SS + NL++KNL
Sbjct: 115 KAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNL 174
Query: 112 DDDMTEEILVEKFSEFGKITS 132
D + +E L E+FS+FG ITS
Sbjct: 175 DKSIDDEKLREEFSQFGTITS 195
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 50/197 (25%)
Query: 62 YSTPESALDAIEKLQG--------------ATVERMELYVGPFIR-RADRIQEGSSFNNL 106
+ PE+A A+E L G +ER F R R +RI N L
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVN-L 62
Query: 107 YVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------------- 147
YVKNL D++ + L ++F++FG ITS + +G SKGFG
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 148 ----SKVLYVARAQKKAERKAILRAQFERMRKER----------AELY-KNINDEVDEIE 192
++ LYVA AQKK +RKA L +Q+ + R L+ KN++ +D+ +
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEK 182
Query: 193 LKQYFSQCGTISSVKIM 209
L++ FSQ GTI+S K++
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 7/77 (9%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCG 201
K++YV QK+ ER+A L+ +F+R+R ER Y KN+ D +D++ L++ F+Q G
Sbjct: 25 KIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLYVKNLADNIDDVRLRKEFAQFG 84
Query: 202 TISSVKIMRTDRGISKG 218
TI+S K+M T+ G SKG
Sbjct: 85 TITSAKVMTTEDGRSKG 101
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV 47
N F+KNL +ID+ KL + FS+FG I S+KVV
Sbjct: 168 NLFIKNLDKSIDDEKLREEFSQFGTITSAKVV 199
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 42/235 (17%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKNL + + L FS FG+I S KV + +GKSKGYGFVQ+ SA I+
Sbjct: 96 GNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKN 155
Query: 75 LQ-------GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
G +ELY P +++ + + + F N ++KN + E+ L++ ++
Sbjct: 156 FNNLNGLMLGGNKIVVELY-NPEMKKGESKKVSTMFTNCFIKNFPGSVGEKELLDLLEKY 214
Query: 128 GKITSLVISKDANGTSKGF-----------------------------GSKVLYVARAQK 158
GK+TSL +G KGF G + Y+ + QK
Sbjct: 215 GKVTSLCFPTKDDGKPKGFAFANFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQK 274
Query: 159 KAERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+ ER +LR FE++ + + LY NI + EL F + G+I+S+ +
Sbjct: 275 REERAEVLRKMFEQLSMQGQNYKKNLYITNIPEGFGAEELSNIFKEFGSITSMSV 329
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN ++ +L + K+G + S +GK KG+ F + T ESAL+AI L
Sbjct: 192 NCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAINGL 251
Query: 76 QG------ATVERMELYVGPFIRRADRIQ-----------EGSSF-NNLYVKNLDDDMTE 117
G Y+ +R +R + +G ++ NLY+ N+ +
Sbjct: 252 HGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIPEGFGA 311
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGF 146
E L F EFG ITS+ + D K +
Sbjct: 312 EELSNIFKEFGSITSMSVGVDGANNQKQY 340
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 38/228 (16%)
Query: 25 TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84
TID+ L +IFS G I + K++ E + + FV + E A A+ + + + +
Sbjct: 25 TIDS-DLFRIFSNVGKILNIKLIKRGES-APSFAFVTFENEEDAEKAVREYKHYELHDRQ 82
Query: 85 LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSK 144
+ V +R+ +R E N++VKNL + T + L + FS FG+I S ++ G SK
Sbjct: 83 IRV---MRKDERPPETG---NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSK 136
Query: 145 GFGSKVLYVARAQKKAERKAI-----LRAQFERMRKERAELY------------------ 181
G+G +V +K++ +K I L K ELY
Sbjct: 137 GYG----FVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMFTN 192
Query: 182 ---KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQT 226
KN V E EL + G ++S+ D G KG A +T
Sbjct: 193 CFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFET 240
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ +L IF +FG I S V V K Y ++ YSTPE A A+E+
Sbjct: 299 NLYITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERG 358
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ L V F + +R++E
Sbjct: 359 NEIYLDGNRLQVAYFKNKLERMKE 382
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 36/263 (13%)
Query: 1 MWSTPNSEARL-SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
+W ++A + SG G+ F+ L +I+ +LH FS FG+I S K+ ++ +GKS+GYG+
Sbjct: 81 LWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGEIISCKIPLT-DGKSRGYGY 139
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL--DDDMTE 117
+Q+ PE+A A +L A++ + + + R++ R F N+Y+K L D T+
Sbjct: 140 IQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRR-NPDEDFTNVYIKPLPVDQVKTD 198
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVA 154
E L + F FG+I + + KD NG SKGFG L V
Sbjct: 199 EDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQVN 258
Query: 155 RAQKKAERKAI-LRAQFERMRKERAE-----LY-KNINDEVDEIELKQYFSQCGTISSVK 207
R K E++ ++ E++ K E LY K+ + +V + E ++YFS+ G I K
Sbjct: 259 RLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSKDVTDKEFQEYFSKFGEIELFK 318
Query: 208 IMRT-DRGISKGHCMAIAQTKRE 229
I R + SKG + ++K +
Sbjct: 319 IERVPETKESKGFGFVLYKSKED 341
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 NAFVKNLASTIDNLK----LHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
N ++K L +D +K L +IF FG+IQ+ + + G SKG+GF + E A+ A
Sbjct: 184 NVYIKPLP--VDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKA 241
Query: 72 IEKLQGAT-------VERM------ELY-VGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
+E L G V R+ ELY + + ++ E ++ NLYVK+ D+T+
Sbjct: 242 VEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSKDVTD 301
Query: 118 EILVEKFSEFGKITSLVISK-DANGTSKGFGSKVLYVARAQKKAERKAILRAQFERM 173
+ E FS+FG+I I + SKGFG +V K+ + AI A ER+
Sbjct: 302 KEFQEYFSKFGEIELFKIERVPETKESKGFG----FVLYKSKEDAQNAIEMAMLERL 354
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKS--KGYGFVQYSTPESALDAIEKL 75
FV +L ID L Q F++ G+I + +V ++ K+ + FV ++T E A A++ L
Sbjct: 9 FVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQAAKAMKNL 68
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
++ + + I + S +L++ LD+ + L + FS FG+I S I
Sbjct: 69 NYTKLDGRPIRILWCDTETKAIIK-SGRGSLFINGLDESIEVSQLHDAFSNFGEIISCKI 127
Query: 136 SKDANGTSKGFG 147
+G S+G+G
Sbjct: 128 PL-TDGKSRGYG 138
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 42/198 (21%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VK+ +++ L ++F K+G I S +V++ ++GK +G+GFV + PESA A+++L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMI-KDGKGRGFGFVAFENPESAEHAVQEL 66
Query: 76 QGATV-ERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEIL 120
G + E LYVG ++ +R E F NLYVKNLDD + +E L
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERL 126
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF------------------------GSKVLYVARA 156
++FS FG ITS + + G SKGF GSK LYVA A
Sbjct: 127 RKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALA 185
Query: 157 QKKAERKAILRAQF-ERM 173
Q+ +RKA L +Q+ +RM
Sbjct: 186 QRTEDRKAHLASQYMQRM 203
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 35/153 (22%)
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITS-LVISKDANGTSKGFG-------------- 147
F N+YVK+ D++ +E L E F ++G ITS V+ KD G +GFG
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKDGKG--RGFGFVAFENPESAEHAV 63
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDE 190
K+LYV RAQKK ER+ L+ +FE+++ ER Y KN++D +D+
Sbjct: 64 QELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDD 123
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAI 223
L++ FS GTI+S K+M + G SKG +
Sbjct: 124 ERLRKEFSPFGTITSAKVM-LEEGRSKGFGFVL 155
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MW + R + GN F+KNL +IDN L+ FS FG + S K+ +G S GY FV
Sbjct: 253 MWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFV 312
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG---SSFNNLYVKNLDDDM-T 116
Y A I K+ G + ++YVG F R +R G + F N+YVKNLD+ + T
Sbjct: 313 HYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCT 372
Query: 117 EEILVEKFSEFGKITSLVI 135
E + + F+ +G ITS+ I
Sbjct: 373 TEEVTKLFAPYGNITSIFI 391
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 39/161 (24%)
Query: 53 KSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA---------------DRI 97
+ +G+ FV + TPE A A+E L G + LYVG ++A DR+
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRM 526
Query: 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF----------- 146
Q+ N L+VKNL DD+ E L E+FS FG ITSL I +D G SKGF
Sbjct: 527 QKLQDVN-LFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEA 585
Query: 147 ------------GSKVLYVARAQKKAERKAILRAQFERMRK 175
G K +YVA AQ+K +R+A + AQ M +
Sbjct: 586 IKAVTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMR 626
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 7/77 (9%)
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAE-------LYKNINDEVDEIELKQYFSQCG 201
K LYV RAQKKAER+A+LRAQ E++R +R + KN++D+VDE L++ FS+ G
Sbjct: 497 KTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVNLFVKNLSDDVDENRLREEFSRFG 556
Query: 202 TISSVKIMRTDRGISKG 218
TI+S++IMR ++G+SKG
Sbjct: 557 TITSLRIMRDEKGVSKG 573
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 56/230 (24%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + L ++FS G + S +V VV++ +S GY +V + PE A AI+
Sbjct: 179 YVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTR--RSLGYAYVNFQNPEDAERAIDV 236
Query: 75 LQGATVERMELYVGPFIR---------RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
LQ Y GP + R+D Q + N+++KNLD + + L + FS
Sbjct: 237 LQ--------FYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFS 288
Query: 126 EFGKITSLVISKDANGTSKGF------------------------GSKVLYVARAQKKAE 161
FGK+ S ++ D G S G+ G KV YV + + E
Sbjct: 289 TFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKV-YVGEFRPRRE 347
Query: 162 RKAI--LRAQFERMRKERAELYKNINDEVDEI-ELKQYFSQCGTISSVKI 208
R+A L +F + KN+++ + E+ + F+ G I+S+ I
Sbjct: 348 REATGELSTKFTNV------YVKNLDESLCTTEEVTKLFAPYGNITSIFI 391
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL+ +D +L + FS+FG I S +++ ++G SKG+GFV +S P+ A+ A+ ++
Sbjct: 533 NLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEM 592
Query: 76 QGATVERMELYVGPFIRRADR 96
V + +YV R+ R
Sbjct: 593 NQRIVGQKPIYVALAQRKDQR 613
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+ E+ L E FS G + S+ + +D T + G YV + +A
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVV-TRRSLG--YAYVNFQNPEDAERA 233
Query: 165 ILRAQF---------------------ERMRKERAELYKNINDEVDEIELKQYFSQCGTI 203
I QF +R E KN++ +D L FS G +
Sbjct: 234 IDVLQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGKV 293
Query: 204 SSVKIMRTDRGISKGHC 220
S K+ D+G S G+
Sbjct: 294 LSCKLATDDKGNSLGYA 310
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKS-KGYGF 59
M S + R+SG GN +KNL +DN L+ FS++G++ S +V G S KGYGF
Sbjct: 110 MISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYGF 169
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-------IQEGSSFNNLYVKNLD 112
V Y T +A AI + G + E++ + + ++ Q+ F N+YVKNL
Sbjct: 170 VNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQQHCRFTNVYVKNLS 229
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFER 172
D+TE+ L E FS G ++S+++ +D KGFG +V + +A+ +
Sbjct: 230 SDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFG----FVNFELPEDAERAVNELHDKD 285
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDR-GISKG 218
E D DEI + + GTI+S KIM+ + G KG
Sbjct: 286 FFAE---------DVTDEILINNFLPY-GTITSAKIMKDESTGAPKG 322
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V LA ID L + FG+++S +V S +S GY + + TP+ A E L
Sbjct: 42 YVGELAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENLN 98
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VI 135
+ ++ + I + + S N+ +KNL ++ + L + FS +G + S V
Sbjct: 99 HSKIDGTTYRL--MISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVF 156
Query: 136 SKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFER 172
+K G+ KG+G K ++ + K E++++L ++
Sbjct: 157 NKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQQ 216
Query: 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ KN++ +V E +L + FS G +SSV + R D+ KG
Sbjct: 217 HCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKG 262
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVK 109
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVK
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVK 224
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 23/169 (13%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
+ L + FS FG I S I+ D NG SKGFG +V ++ A ++AI
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFG----FVHFEEEGAAKEAI 183
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV +L+ ++E L + FS G ++S+ + +DA TS G+ YV +A RKA
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYA----YVNFNDHEAGRKA 95
Query: 165 I-------LRAQFERM----------RKERAELY-KNINDEVDEIELKQYFSQCGTISSV 206
I ++ + R+ +K ++ KN++ ++D L FS G I S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 207 KIMRTDRGISKG 218
KI + G SKG
Sbjct: 156 KIATDENGKSKG 167
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 139/299 (46%), Gaps = 67/299 (22%)
Query: 147 GSKVLYVARAQKKAERKAILRAQFERMRKE------RAELY-KNINDEVDEIELKQYFSQ 199
GS+ ++ KKAERK L+ E R E + +Y KNI+DEVD+ L++ F++
Sbjct: 20 GSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAE 79
Query: 200 CGTISSVKIMRTDRGISKG------------HC----------------MAIAQTKRERT 231
G I+SVKIMR D+GISKG C +AIAQ K +R
Sbjct: 80 FGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRK 139
Query: 232 SYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPP-------- 283
+ L +A+ +A T PV PT Y + + F G GF PP
Sbjct: 140 ARLEQRFAELA-TMAGTASPVIPTGYPHVYFAHPSTHFPQGPSR-QGFMYPPIGLGQEWR 197
Query: 284 ----PSPLFL------MAPDSVTQYR---GAMMNGHANFPMPL-MLSNLQKPSYNYPISQ 329
PSP + + P++ QYR G M FP + +S+ Q +S+
Sbjct: 198 QNVYPSPHSIQQIHAPLMPNTPRQYRNNRGRMTGNMMTFPHAVNYVSHPQAAKDFMSMSR 257
Query: 330 PRAGQA---AANNLTNG---NHRAAAS--NENLSSMLVATSPDERKDILGQRLYPLVKK 380
+ G A + ++NG +H S N++ +S+L A PD+++D+LG R+YPLV++
Sbjct: 258 QQFGHAKYIPPDVVSNGLAIHHSGPISSVNDSFASLLAAAPPDQQRDMLGNRIYPLVER 316
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN++ +D+ L + F++FG+I S K++ +G SKG+GFV YSTP+ A A+ +
Sbjct: 58 NVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSM 117
Query: 76 QGATVERMELYVGPFIRRADR 96
+G LYV R+ DR
Sbjct: 118 RGVMFYGKPLYVAIAQRKEDR 138
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 34/157 (21%)
Query: 86 YVGPFIRRADRIQEGSS----FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG 141
+VG F R +R +E S F N+Y+KN +D T+E L E FS FG+ S+ + KD G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 142 TSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERMRKERA 178
S+GFG KV+YV RAQK+ ER+ L+ +FE ++++R
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 179 ELY-------KNINDEVDEIELKQYFSQCGTISSVKI 208
+ Y KN++D +D+ L++ F+ GTI+S K+
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN + KL ++FS FG S +V+ + G+S+G+GFV ++ A A++++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 76 QGATVERMELYVGPFIRR---------------ADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G + +YVG +R DRIQ NLYVKNLDD + +E L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVKNLDDGIDDERL 142
Query: 121 VEKFSEFGKITSLVI 135
++F+ +G ITS +
Sbjct: 143 RKEFAPYGTITSAKV 157
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 6 NSEARLSG--IG--NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
N + L G IG N VKNL + DN L+ FS FGDI SSKV V E K KG+GFV
Sbjct: 85 NKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVDSENKPKGFGFVC 144
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMTE 117
Y S AI G + L V F+R+ DR+ E F N Y+KN ++E
Sbjct: 145 YKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKIEELFTNCYIKNF-GGLSE 203
Query: 118 EILVEKFSEFGKITSLVISKDANGTSKGFG 147
E L E + +G+ITS V+ ++A+ + KGF
Sbjct: 204 EQLKEICANYGEITSFVVPRNADNSLKGFA 233
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEGKSKG---YGFVQYSTPESALDAIEKLQGATVERMELYV 87
LH++FS G + S K++ + +S G Y +V Y + AL A++ L A + ++ V
Sbjct: 22 LHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQNLNFAELHGTQIRV 81
Query: 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ ++ + + N+ VKNL + L + FS FG I S ++ D+ KGFG
Sbjct: 82 MLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVDSENKPKGFG 141
Query: 148 SKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDE---VDEIELKQYFSQC 200
+V K + +KAIL A M ++ K + E V++ ++++ F+ C
Sbjct: 142 ----FVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKIEELFTNC 193
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
+ T E+A AIEK+ G + +++VG F R +R E
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G V M P +R+ S N+++KNLD + + L + FS F
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I S + D NG SKG+G +V ++A +AI
Sbjct: 123 GNILSCKVVCDENG-SKGYG----FVHFETQEAAERAI 155
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
+ P A SG GN F+K L +ID L+LH++F+ +G+I S ++ + G+ +G+G+VQ+
Sbjct: 87 TAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIP-TLNGQPRGFGYVQF 145
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADRIQEG-------SSFNNLYVKNLDDDM 115
E A A+++L +TV + +GPF++R++R SSF N++VKNL D++
Sbjct: 146 LKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNLDSSFTNVFVKNLPDNI 205
Query: 116 TEEI-LVEKFSEFGKITSLVI 135
+ L+ F EFG +TS I
Sbjct: 206 NTLLSLLRLFHEFGDVTSARI 226
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 12 SGIGNAFVKNLASTIDNL-KLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
S N FVKNL I+ L L ++F +FGD+ S+++V + G+V S E+A+
Sbjct: 191 SSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIV-----PERHIGYVMMSEHEAAVR 245
Query: 71 AIEKLQGATVERMELYVGPFIRRADR 96
A+ L G T+ L V + A+R
Sbjct: 246 AVVGLCGRTIFGKRLSVCRSLSPAER 271
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 90 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 148
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFNNLYVKNLDD 113
+ T E+A AIEK+ G + +++VG F R +R E G+ Y ++ D
Sbjct: 149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFYPYDVPD 202
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY +V + P E AL
Sbjct: 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 74
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G V M P +R+ S N+++KNLD + + L + FS F
Sbjct: 75 DTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAF 127
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I S + D NG SKG+G +V ++A +AI
Sbjct: 128 GNILSCKVVCDENG-SKGYG----FVHFETQEAAERAI 160
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ +DD
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEDDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 516 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKGP-KGYGFV 574
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ D+D
Sbjct: 575 HFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFDEDTD 634
Query: 117 EE 118
EE
Sbjct: 635 EE 636
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 445 YVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 504
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 505 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSTFGNIL 557
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRK 175
S ++ D G KG+G + Q+ AER ++ F RK
Sbjct: 558 SCKVACDEKGP-KGYG---FVHFQEQESAERAIDVMNGMFLNYRK 598
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G+I S+ I +D T + G YV Q ++A
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD-KITRRSLG--YAYVNYQQPVDAKRA 499
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 500 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSC 559
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 560 KVACDEKG 567
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV
Sbjct: 85 MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEI 119
+ T E+A AI + G + ++ R+D +S + + MTE
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKV-------RSDYPWSLASLCPATLISSCFQVMTESS 196
Query: 120 LVEKFSEFGKITSLVISKDANGTSKG--FGSKVLYVARAQKKAERKAILRAQFER 172
+ F F +S + A G G+K LYVA AQ+K ERKAIL Q+ R
Sbjct: 197 HSKGFG-FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR 250
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L+++FS G I S +V +S GY ++ + P E AL
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M + P +RR S N+++KNL++ + + L + FS F
Sbjct: 70 DTMNFEMIKGQPIRIMWSHRDPGLRR-------SGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I S + + +G S+GFG +V +A +KAI
Sbjct: 123 GSILSSKVVYNEHG-SRGFG----FVHFETHEAAQKAI 155
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 95 DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVA 154
D G S ++LYV +L D+TE +L E FS G I S+ + +D T + G Y+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDV-ATRRSLG--YAYIN 58
Query: 155 RAQKKAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQY 196
Q +A+ FE ++ + + KN+ + +D L
Sbjct: 59 FQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDT 118
Query: 197 FSQCGTISSVKIMRTDRGISKG 218
FS G+I S K++ + G S+G
Sbjct: 119 FSTFGSILSSKVVYNEHG-SRG 139
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 41/262 (15%)
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEEILVEKF 124
+ + A L G+ V+ +L+V FI + +R + F N+YV+NL +++TE+IL F
Sbjct: 27 AGVSARSALHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLF 86
Query: 125 SEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQKKAE 161
S++G ++S+V+ +D G S+G GSK L+V +A +K E
Sbjct: 87 SQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDE 146
Query: 162 RKAILRAQFERMRKERAEL------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
R +L+ F + + KN+++ +++ L++ F + G I S K+MR + G
Sbjct: 147 RMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGR 206
Query: 216 SKGH---CMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHG 272
SKG C + + ++ YL + G L + +R Q + RH
Sbjct: 207 SKGFGFVCFSNREESKQAKRYLNV----DGKPLVVRVTERKEDTLKRLHQYFHGQP-RHY 261
Query: 273 GMIPNGFSPPPPSPLFLMAPDS 294
P P P P+ P S
Sbjct: 262 TQAP--LVPSPTQPVLSYVPSS 281
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +V+NL + LH++FS++G + S V+ G+S+G GFV + E+A A+E L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 76 QGATVERMELYVGPFIRRADRIQ-------------EGSSFNNLYVKNLDDDMTEEILVE 122
G + L+VG +R+ +R++ ++N+YVKNL + M + L E
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLRE 186
Query: 123 KFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAER 162
F +G+I S + + NG SKGFG K+A+R
Sbjct: 187 IFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKR 226
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 41/59 (69%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
G N +VKNL+ ++++ +L +IF ++G I S+KV+ + G+SKG+GFV +S E + A
Sbjct: 166 GWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQA 224
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 40/194 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + L ++F+K+G I S V+ S +GKSKG+GFV ++ PE A A++ L
Sbjct: 32 NVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQAL 90
Query: 76 QGATVE--RMELYVGPFIRRADRIQEGSSFN--------------NLYVKNLDDDMTEEI 119
+ VE ++L+V ++++R E + NLYVKNLD+ + +E
Sbjct: 91 NDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEA 150
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L ++F FG ITS + D NG SKGFG SK LYVA A
Sbjct: 151 LKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALA 210
Query: 157 QKKAERKAILRAQF 170
Q+K +R+A L +Q+
Sbjct: 211 QRKEDRRAQLASQY 224
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 39/194 (20%)
Query: 84 ELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKD 138
+++VG F RA R +E + N+YVKN D +E L + F+++G ITS V++ D
Sbjct: 7 KVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSD 66
Query: 139 ANGTSKGFG-------------------SKV------LYVARAQKKAERKAILRAQFERM 173
G SKGFG S V L+V RAQKK+ER A L+ + E+
Sbjct: 67 --GKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQH 124
Query: 174 RKERAELY-------KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQT 226
+ ER + Y KN+++ VD+ LK+ F G I+S K+M + G SKG +
Sbjct: 125 KVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEK 184
Query: 227 KRERTSYLRIMYAK 240
E T+ + M +K
Sbjct: 185 PEEATTAVTEMNSK 198
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 47/243 (19%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N FVKN+ KL++IF FG I S KV V G+S+GYGFVQY T ESA AI
Sbjct: 136 ANLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIAD 195
Query: 75 LQGATVERMELYVGPFIRRADRIQE-------GSSFNNLYVKNLDDDMTEEILVEKFSEF 127
L+ E L + F R+ R Q+ SSF N++VKN +TE L + ++
Sbjct: 196 LRDEKFEGKTLSISRF-DRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKY 254
Query: 128 GKITSLVISKDANGTSKGFG------------------------------SKV----LYV 153
G I S+ + + GF S V Y+
Sbjct: 255 GPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYI 314
Query: 154 ARAQKKAERKAILRAQFERMR----KERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+A+++ ER+ +R Q E + + LY +I + E E++ FS+ GTI S+K+
Sbjct: 315 QKAERRKEREETIRKQLEALSLKGINSKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIKL 374
Query: 209 MRT 211
+T
Sbjct: 375 QKT 377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKN S++ KL I K+G I S + ++++ + G+ V + E A A+E L
Sbjct: 232 NVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENL 291
Query: 76 QGATVERME------LYVGPF-IRRADRIQEG----------------SSFNNLYVKNLD 112
+ +E + PF I++A+R +E +S NNLY+ ++
Sbjct: 292 HNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSKNNLYIAHIP 351
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+ +E+ + + FS+FG I S+ + K ++ +K FG
Sbjct: 352 ETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFG 386
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 11 LSGIG---NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
L GI N ++ ++ T ++ +FSKFG I S K+ + +K +G++ + TPE
Sbjct: 336 LKGINSKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEE 395
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS 102
A A E + G ++ +L + + + +R E +S
Sbjct: 396 AAAAFEAMDGTLLDNSKLRISFYKAKNERRAESTS 430
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 365 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 423
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 424 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 483
Query: 117 EE 118
EE
Sbjct: 484 EE 485
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 290 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 349
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 350 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 402
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 403 GNILSCKVACDEKG-PKGYG 421
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLG--YAYVNYQQPVDAKRA 348
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 349 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC 408
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 409 KVACDEKG 416
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 43/236 (18%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKNL L FS FG+I S KV + GKSKGYGFVQ+ ++A I+
Sbjct: 96 GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKN 155
Query: 75 -------LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
L G +ELY P I++ + + ++F N ++KN D +E L+E +
Sbjct: 156 FSSLDGLLLGGNRIVVELY-NPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERY 214
Query: 128 GKITSLVISKDANGTSKGFG------------------------------SKVLYVARAQ 157
GK+TSL NG KGF + Y+ + Q
Sbjct: 215 GKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQ 274
Query: 158 KKAERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+K ER LR FE+M + + LY NI + EL F + G I+S+ +
Sbjct: 275 RKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISV 330
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L+ + L ++FS G + S K++ E S + FV + E A AI + +
Sbjct: 17 YVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYKH 75
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ ++ V +++ +R E N++VKNL +D T + L + FS FG+I S ++
Sbjct: 76 YELHNRQIRV---MKKDERPPETG---NIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVAT 129
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAI 165
++G SKG+G +V +KKA +K I
Sbjct: 130 TSHGKSKGYG----FVQFKEKKAAKKVI 153
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN +L ++ ++G + S V GK KG+ F + ESAL+AI+ L
Sbjct: 192 NCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNL 251
Query: 76 QG---------ATVERMELYVGPFIRRADRIQE-----------GSSF-NNLYVKNLDDD 114
G T E Y+ R+ +R +E G S+ NLY+ N+ +
Sbjct: 252 HGTFPFGAGRDGTGE--AFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEG 309
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF 146
E L F EFG ITS+ + D + K +
Sbjct: 310 FGCEELGSIFKEFGNITSISVGVDGANSQKQY 341
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ +L IF +FG+I S V V K Y ++ YSTPE A A+E+
Sbjct: 300 NLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERG 359
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ L V F + +R++E
Sbjct: 360 NEIYLDGNRLQVAYFKNKLERMKE 383
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ F G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 43/236 (18%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKNL L FS FG+I S KV + GKSKGYGFVQ+ ++A I+
Sbjct: 96 GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKN 155
Query: 75 -------LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
L G +ELY P I++ + + ++F N ++KN D +E L+E +
Sbjct: 156 FSSLDGLLLGGNRIVVELY-NPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERY 214
Query: 128 GKITSLVISKDANGTSKGFG------------------------------SKVLYVARAQ 157
GK+TSL NG KGF + Y+ + Q
Sbjct: 215 GKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQ 274
Query: 158 KKAERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+K ER LR FE+M + + LY NI + EL F + G I+S+ +
Sbjct: 275 RKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISV 330
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L+ + L ++FS G + S K++ E S + FV + E A AI + +
Sbjct: 17 YVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYKH 75
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ ++ V +++ +R E N++VKNL +D T + L + FS FG+I S ++
Sbjct: 76 YELHNRQIRV---MKKDERPPETG---NIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVAT 129
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAI 165
++G SKG+G +V +KKA +K I
Sbjct: 130 TSHGKSKGYG----FVQFKEKKAAKKVI 153
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN +L ++ ++G + S V GK KG+ F + ESAL+AI+ L
Sbjct: 192 NCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNL 251
Query: 76 QG---------ATVERMELYVGPFIRRADRIQE-----------GSSF-NNLYVKNLDDD 114
G T E Y+ R+ +R +E G S+ NLY+ N+ +
Sbjct: 252 HGTFPFGAGRDGTGE--AFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEG 309
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF 146
E L F EFG ITS+ + D + K +
Sbjct: 310 FGCEELGSIFKEFGNITSISVGVDGANSQKQY 341
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ +L IF +FG+I S V V K Y ++ YSTPE A A+E+
Sbjct: 300 NLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERG 359
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ L V F + +R++E
Sbjct: 360 NEIYLDGNRLQVAYFKNKLERMKE 383
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 79 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 137
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 138 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 197
Query: 117 EE 118
EE
Sbjct: 198 EE 199
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 4 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 63
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 64 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 116
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 117 GNILSCKVACDEKG-PKGYG 135
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ K +DD
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTGADCKGFEDDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSTF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 361 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 419
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 420 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 479
Query: 117 EEILV 121
EE +
Sbjct: 480 EEATL 484
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 290 YVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 349
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 350 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 402
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 403 SCKVACDEKGP-KGYG 417
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLG--YAYVNYQQPVDAKRA 344
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 345 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC 404
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 405 KVACDEKG 412
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN +V+ L T + L +IFS++G + S K++ G SKGYGF+ ++ A AI+
Sbjct: 95 GNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDN 154
Query: 75 LQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
L G V+ L+V I + DR++E + NLYVKN DD+T+E L + F ++G +
Sbjct: 155 LNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDV 214
Query: 131 TSLVISKDANGTSKGFG 147
S+ + + ++G+
Sbjct: 215 ESVFLPQGTGNHNRGYA 231
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E R N +VKN + KL Q+F ++GD++S + ++GY F+ + + E
Sbjct: 181 EMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHED 240
Query: 68 ALDAIEKLQGATVER-MELYVGPFIRRADRIQ 98
A+ A E L G + L +G RR DR+Q
Sbjct: 241 AVRAQENLDGFEIAPGYRLQLGKAERRKDRMQ 272
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
NLYV+ L T + LV FS +G + S I D G SKG+G ++ A + +KA
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYG----FINFADRIEAQKA 151
Query: 165 I----------------------LRAQFERMRKER-AELY-KNINDEVDEIELKQYFSQC 200
I R + MRK + LY KN D++ + +L Q F Q
Sbjct: 152 IDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQY 211
Query: 201 GTISSVKIMRTDRGISKGHCM 221
G + SV + + ++G+
Sbjct: 212 GDVESVFLPQGTGNHNRGYAF 232
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-------------------SQEGKSKG 56
N ++ +L + L+++F+ FG I S+K++ S+EG+S+G
Sbjct: 330 NLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRG 389
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFI-RRADRIQEG--SSFNNLYVKNLDD 113
+GFV ++ P A A+ + G V+ + F R+ ++ ++G +N ++ N +
Sbjct: 390 FGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQNHLGNFYN 449
Query: 114 DMTEEILVEKFS 125
+ + FS
Sbjct: 450 YLNQNFTKRSFS 461
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 404 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 462
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRADRIQEGSSFNNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F R A+R + VK+ ++D
Sbjct: 463 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 522
Query: 117 EE 118
EE
Sbjct: 523 EE 524
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 329 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 388
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 389 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 441
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 442 GNILSCKVACDEKG-PKGYG 460
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLG--YAYVNYQQPVDAKRA 387
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 388 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC 447
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 448 KVACDEKG 455
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 135 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 409 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 467
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRADRIQEGSSFNNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F R A+R + VK+ ++D
Sbjct: 468 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 527
Query: 117 EE 118
EE
Sbjct: 528 EE 529
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 338 YVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 397
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 398 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 450
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 451 SCKVACDEKG-PKGYG 465
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLG--YAYVNYQQPVDAKRA 392
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 393 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC 452
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 453 KVACDEKG 460
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 119 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 177
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 178 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 237
Query: 117 EE 118
EE
Sbjct: 238 EE 239
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S + + +S GY +V Y P A A+
Sbjct: 44 MASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRAL 103
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 104 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 156
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRK 175
G I S ++ D G KG+G + Q+ AER ++ F RK
Sbjct: 157 GNILSCKVACDEKG-PKGYG---FVHFQKQESAERAIDVMNGMFLNYRK 201
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 169 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 227
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 228 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 287
Query: 117 EE 118
EE
Sbjct: 288 EE 289
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 98 YVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 157
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 158 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 210
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRK 175
S ++ D G KG+G + Q+ AER ++ F RK
Sbjct: 211 SCKVACDEKG-PKGYG---FVHFQKQESAERAIDVMNGMFLNYRK 251
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 125 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + VK+ ++D
Sbjct: 184 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTD 243
Query: 117 EE 118
EE
Sbjct: 244 EE 245
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 54 YVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 113
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 114 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 166
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRK 175
S ++ D G KG+G + Q+ AER ++ F RK
Sbjct: 167 SCKVACDEKG-PKGYG---FVHFQKQESAERAIDVMNGMFLNYRK 207
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF----NNLYVKNLDDDMT 116
+ ESA AI+ + G + +++VG F +R E ++ + K+ ++D
Sbjct: 135 HFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADCKDFEEDTD 194
Query: 117 EE 118
EE
Sbjct: 195 EE 196
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 113
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 114 GNILSCKVACDEKG-PKGYG 132
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAI 72
G GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 73 EKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNL 111
EK+ G + +++VG F R +R E F N+Y+KN
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNF 105
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
N+++KNLD + + L + FS FG I S + D NG SKG+G +V ++A +A
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG----FVHFETQEAAERA 61
Query: 165 I 165
I
Sbjct: 62 I 62
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV++ ++G+SKG+GFV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVML-EDGRSKGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR 96
+S+PE A A+ ++ G V LYV R+ +R
Sbjct: 144 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 179
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST 64
N+ A + + +V +L S + L++ FS G + S +V +S GY +V +
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 65 P---ESALDAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEI 119
P E ALD + + ++G + M P +R+ S N+++KNLD + +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-------SGVGNVFIKNLDKSIDNKA 114
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L + FS FG I S + + +G SKGFG SK LYVA A
Sbjct: 115 LYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 173
Query: 157 QKKAERKAILRAQF-ERMRKERA 178
Q+K ERKA L Q+ +R+ RA
Sbjct: 174 QRKEERKAHLTNQYMQRVAGMRA 196
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+M D G SKG + E T + M +
Sbjct: 129 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 161
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 1 MWSTPNSEARL-SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
+WS P ++ + + +G F++ L I+ +LH FS FG+I S K+ ++ GKS+GYGF
Sbjct: 80 LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCKIPLTN-GKSRGYGF 138
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM--TE 117
+ + + A A L A++ + + F ++ R +F N+++K L D+ T+
Sbjct: 139 ITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTRKNPEETFTNVFIKPLPADIFKTD 197
Query: 118 EILVEKFSEFGKIT-----SLVISKDANGTSKGFG------------------------S 148
+ L F EFG + I + +G+S FG
Sbjct: 198 DDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESG 257
Query: 149 KVLY-VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQC 200
KV + RAQ KAER+A L Q R+ E LY KN + V + + K+YF Q
Sbjct: 258 KVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQF 317
Query: 201 GTISSVKIMRT--DRGISKGHCMAIAQTK 227
G + I R + SKG + +TK
Sbjct: 318 GEVEKCSIRREAQEPHESKGFGFVLFKTK 346
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 16 NAFVKNLASTI--DNLKLHQIFSKFGDI-----QSSKVVVSQEGKSKGYGFVQYSTPESA 68
N F+K L + I + L F +FGD + + ++G S +GF + E A
Sbjct: 183 NVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHEDA 242
Query: 69 LDAIEKLQG----------------ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLD 112
+ A++ L G ER R+ E + NLYVKN D
Sbjct: 243 VKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNFD 302
Query: 113 DDMTEEILVEKFSEFGKITSLVISKDAN--GTSKGFGSKVLYVARAQKKAERKAIL 166
+T+E E F +FG++ I ++A SKGFG + + + A A++
Sbjct: 303 QSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVI 358
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKV--VVSQEGKSKGYGFVQYSTPESALDAIE 73
N +VKN ++ + + + F +FG+++ + + +SKG+GFV + T ESA +A+E
Sbjct: 295 NLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALE 354
Query: 74 KLQGATVERMELYVGPFIRRADRIQEGSS 102
+ Y+G F + +R +E +S
Sbjct: 355 NAVITPLNGKTPYIGLFKMKEEREREKAS 383
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 40/183 (21%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N FV++L + L H F++FG+I SS++ V +E SKGYGF+QY+T E A AI +
Sbjct: 116 ANVFVQDLPLALSALAFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAE 175
Query: 75 LQGATVE--------RMELYV------GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
G+ ++ R ++V P R A R F NL+ KNL D+T E
Sbjct: 176 TNGSLLDVAGGEKPIRTSIFVKKDAPSSPTSRAAAR-----EFKNLFFKNLPADITLEAF 230
Query: 121 VEKFSEFGKITSLVISKDANGTSKGF---------------------GSKVLYVARAQKK 159
+S++G ITS V++ D +G G G +Y RA K
Sbjct: 231 KATWSKYGVITSAVLTVDEDGKPTGTAFASFQNHSDAVRVIKATQRKGPDEVYAVRALSK 290
Query: 160 AER 162
AER
Sbjct: 291 AER 293
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 43/261 (16%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTPESALDAIE 73
+ +V +L + I +L ++FS+ + S ++ + Y ++ YS+ + +AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 74 -----KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFG 128
K G M+ G I +G N++V++L ++ + F+EFG
Sbjct: 89 EYNHTKFAGKPCRVMKPKRG--------IVKGPPEANVFVQDLPLALSALAFHDTFAEFG 140
Query: 129 KITSLVISKDANGTSKGFG------------------SKVLYVARAQKKAERKAILRAQF 170
+I S +S D SKG+G +L VA +K ++
Sbjct: 141 EILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDA 200
Query: 171 ERMRKERAE-------LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAI 223
RA +KN+ ++ K +S+ G I+S + + G G A
Sbjct: 201 PSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFAS 260
Query: 224 AQTKRERTSYLRIMYAKQGPG 244
Q + +R++ A Q G
Sbjct: 261 FQN---HSDAVRVIKATQRKG 278
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
S+P S A N F KNL + I +SK+G I S+ + V ++GK G F +
Sbjct: 202 SSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASF 261
Query: 63 STPESALDAIEKLQ 76
A+ I+ Q
Sbjct: 262 QNHSDAVRVIKATQ 275
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 105 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 163
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF 103
+ ESA AI+ L G + +++VG F +R E ++
Sbjct: 164 HFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 206
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E +
Sbjct: 34 YVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALETMN 93
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 94 FDVINGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 146
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI--LRAQFERMRK 175
S ++ D G KG+G +V ++++ +AI L F RK
Sbjct: 147 SCKVACDEKGP-KGYG----FVHFQKQESAERAIDALNGMFLNYRK 187
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 41/234 (17%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKNL + L FS FG+I S KV + GKSKGYGFVQ+ ++A I+
Sbjct: 11 GNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKN 70
Query: 75 LQ-------GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
G +ELY P +++ + + + F N ++KN D+ EE L E ++
Sbjct: 71 FNNLNGLMLGENKIVVELY-NPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLRELLEKY 129
Query: 128 GKITSLVISKDANGTSKGFG----------------------------SKVLYVARAQKK 159
GK+TSL +G KGF + Y+ + Q+K
Sbjct: 130 GKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKGQRK 189
Query: 160 AERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
ER LR FE++ + + LY NI + EL F + G I+S+ +
Sbjct: 190 EERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFGNITSMSV 243
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KN ++ L ++ K+G + S ++GK KG+ F + + E AL+AI+ L
Sbjct: 107 NCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNL 166
Query: 76 Q-----GATVERMELYVGPFIRRADRIQE-----------GSSF-NNLYVKNLDDDMTEE 118
G Y+ R+ +R +E G S+ NLY+ N+ + E
Sbjct: 167 HETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAE 226
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGF 146
L F EFG ITS+ + D + K +
Sbjct: 227 ELNNIFREFGNITSMSVGTDGANSQKQY 254
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ +L+ IF +FG+I S V K Y +V YSTPE A A+E+
Sbjct: 213 NLYITNIPEGFGAEELNNIFREFGNITSMSVGTDGANSQKQYAYVCYSTPEEASIAVERG 272
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ L V F + +R++E
Sbjct: 273 NEIYLDGNRLQVAYFKNKLERMKE 296
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 332 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 390
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF 103
+ ESA AI+ L G + +++VG F +R E ++
Sbjct: 391 HFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 433
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E +
Sbjct: 261 YVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMN 320
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 321 FDVINGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 373
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 374 SCKVACDEKG-PKGYG 388
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N +V L ++ + H FS+FG+I SSK+VV+ + S +GF+QY+T E A AI+K
Sbjct: 262 ANIYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQK 321
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSS-------FNNLYVKNLDDDMTEEILVEKFSEF 127
GAT++ M+ P + + EG + F+N+Y KN+ D+T + EF
Sbjct: 322 TNGATLD-MKDSTRPI---STSLFEGQAKPPRQPPFHNVYFKNIPKDITRRCFDQFCEEF 377
Query: 128 GKITSLVISKDANGTSKGFG 147
G TS + KDA+G G G
Sbjct: 378 GPTTSTFLKKDADGKPMGIG 397
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 314 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 372
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF 103
+ ESA AI+ L G + +++VG F +R E ++
Sbjct: 373 HFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 415
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E +
Sbjct: 243 YVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMN 302
Query: 77 -----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 303 FDVINGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 355
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 356 SCKVACDEKGP-KGYG 370
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
G FVKNLA +DN + F+ G S+KV+ + EGKS+G+ V Y P+ A A+++
Sbjct: 103 GTLFVKNLAEDVDNKTIFDTFASIGAPSSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDE 162
Query: 75 LQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
L+G V R+E Y + +++E S +Y+ L ++T++ L++ S FG +
Sbjct: 163 LEGVVVNGKNIRLERY-----QTGAQLKEESRKRTVYLAGLPHEVTDKQLIDLLSPFGSV 217
Query: 131 TSLVI---SKDANGTSKGFGSKVLYVARAQKKA-----ERKAILRAQFE----------- 171
S+ + KD N + V RA +K ER+ I AQ +
Sbjct: 218 ISVKLYPKDKDRNPVAFVTMEDEQAVLRAVEKLNGGSFERQRITVAQLQARNPATQSSGP 277
Query: 172 ---RMRKER--AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQ 225
R +E A LY +NI ++V + +L + F G +S V I R+ G ++G + +
Sbjct: 278 TSARQVEETKDATLYVRNIYEDVQDSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFE 337
Query: 226 TKRERTSYL 234
+R L
Sbjct: 338 NPEDRAHAL 346
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N FVK+L + + + H F+ FG++ SSK+ + KGYGFVQY+T E A AI +
Sbjct: 116 ANVFVKHLPAKLSAIAFHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRE 175
Query: 75 LQGATVERMELYVGP-----FIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
G+T++ +E P FI++ +RI F N++ +NL +T E + +S++G
Sbjct: 176 TNGSTLD-VEGATKPIKTSLFIKKENRIV-SREFKNVFFRNLSTKITLEKFKQTWSKYGV 233
Query: 130 ITS--LVISKDANGTSKGFG 147
ITS L + KD T GF
Sbjct: 234 ITSAFLSLGKDGKPTGTGFA 253
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 30/214 (14%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKS--KGYGFVQYSTPESALDAIE 73
+ +V +L I +L Q+FS+ ++ ++ + + + Y +V YS+ ++A AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 74 KLQGATVERMELYVGPFIRRADRIQ---EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
+ ++G R I +G S N++VK+L ++ + F++FG++
Sbjct: 89 EFNQTE------FLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEV 142
Query: 131 TSLVISKDANGTSKGFGSKVLYVARAQKKAER-------------KAILRAQFERM---- 173
S ++ D KG+G A +KA R K I + F +
Sbjct: 143 LSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENRI 202
Query: 174 --RKERAELYKNINDEVDEIELKQYFSQCGTISS 205
R+ + ++N++ ++ + KQ +S+ G I+S
Sbjct: 203 VSREFKNVFFRNLSTKITLEKFKQTWSKYGVITS 236
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 50/244 (20%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N VKNL S+ N L+ FS FG I S+K+ +GK K YGFVQ+ +SA AI+
Sbjct: 96 ANLIVKNLPSSFTNENLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKH 155
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEK 123
G ++ + V F + R QE + F N ++KN + TE+ L
Sbjct: 156 CDGGKLDNKIIQVEIFDKEKRRKQEEQALENKPVKLEPKFTNCFIKNFPESFTEKDLESL 215
Query: 124 FSEFGKITSLVIS-KDANGTSKGF-------------------GSKV------------- 150
+++G ITS+ KD SKGF G ++
Sbjct: 216 LNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQELHGKQIFPFEENSYTTKLE 275
Query: 151 -LYVARAQKKAERKAILRAQFERMRKE----RAELY-KNINDEVDEIELKQYFSQCGTIS 204
Y+ +AQKK ER+ L+ FE++ E + LY NI +++ ++ + FS+ G+I
Sbjct: 276 PFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNIPAFIEKDDIFEIFSEFGSIV 335
Query: 205 SVKI 208
S I
Sbjct: 336 SFSI 339
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 48/277 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L+S L +IFS G++ K+ E S + FV ++ ++A AI++
Sbjct: 15 YVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIKEYNN 73
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + V P + + ++ NL VKNL T E L + FS FG I S I+
Sbjct: 74 FRLNKKNIRVLPCMDEKSKREDA----NLIVKNLPSSFTNENLYDTFSVFGTIISAKIAT 129
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAILRAQ-------------FERMRKERAE----- 179
A+G K +G +V +KK+ + AI F++ ++ + E
Sbjct: 130 YADGKPKNYG----FVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALE 185
Query: 180 -------------LYKNINDEVDEIELKQYFSQCGTISSVKI-MRTDRGISKGHCMAIAQ 225
KN + E +L+ ++ G I+S+ ++ +SKG A +
Sbjct: 186 NKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFE 245
Query: 226 TKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ 262
+ + ++ ++ KQ IFP Y L+
Sbjct: 246 SHESAQNAIQELHGKQ-------IFPFEENSYTTKLE 275
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ N+ + I+ + +IFS+FG I S + + + + Y +V YST + A AIEK
Sbjct: 309 NLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKG 368
Query: 76 QGATVERMELYVGPFIRRADRIQE 99
++ +L V F +A+R +E
Sbjct: 369 NELFIDNNKLNVTYFKNKAERTKE 392
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 37/160 (23%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN------ 104
G S+ +GFV + E A +A++ L G ++ M LYV ++++R E + F
Sbjct: 6 GLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQK 65
Query: 105 -------NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKG------------ 145
NLY+KNLDDD+ +E L + F FG++ S + D++G SKG
Sbjct: 66 FEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDA 125
Query: 146 -----------FGSKVLYVARAQKKAERKAILRAQFERMR 174
G K LYVA AQ+K ERKA L A F R+R
Sbjct: 126 NNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVR 165
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 138/314 (43%), Gaps = 82/314 (26%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVD 189
K+ NG K G VLYVARAQKK+ER+A L+A+FE + ++ E LY KN++D+++
Sbjct: 27 KNLNG--KSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDIN 84
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHC----------------------------- 220
+ L++ F G ++S K+M G SKG C
Sbjct: 85 DEHLRKLFECFGEVASCKVMLDSHGRSKG-CGFVSFATVEDANNAILKMNGKMVGKKPLY 143
Query: 221 MAIAQTKRERTSYLRIMYAK------QGPGLASTIFPVHPTLYQRALQVYQA-------- 266
+A+AQ K ER ++L +A+ P L I P H + +
Sbjct: 144 VAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAP-HQFNFGHGVPALFPPPPPAGFG 202
Query: 267 --PDFRHGGMIPNGF-------SPPP----------PSPLFLMAPDSVTQYRGAMMNGHA 307
P+F M+P S PP P +F + ++ NG A
Sbjct: 203 FQPNFVPNMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVA 262
Query: 308 NFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERK 367
N P ML Q ++ P+ QP Q A ++ A SN NL + L + +P++++
Sbjct: 263 N---PAMLH--QHHRFSSPM-QPM--QQAVKHVVPVGELQAPSN-NLQTSLASANPEQQR 313
Query: 368 DILGQRLYPLVKKL 381
+ILG L+PLV++L
Sbjct: 314 EILGDMLFPLVEQL 327
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL I++ L ++F FG++ S KV++ G+SKG GFV ++T E A +AI K+
Sbjct: 73 NLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKM 132
Query: 76 QGATVERMELYVGPFIRRADR 96
G V + LYV R+ +R
Sbjct: 133 NGKMVGKKPLYVAVAQRKEER 153
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 114/267 (42%), Gaps = 67/267 (25%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
G +KN+ +D+ +L ++F+ FG I S ++ + GKSKGYGFV YST E+A A+
Sbjct: 248 GKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAA 307
Query: 75 LQGATVERME--LYVGPFIR-------RADRIQEGSSF----------NNLYVKNLDDDM 115
G T +R+ L V F +A+R+ E NL ++NL + +
Sbjct: 308 THGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESI 367
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE---- 171
E+ L F+ FGKI + + +D G S+ KV +V A + KA+ +
Sbjct: 368 DEKQLRALFAPFGKIRTCHVLRDDMGRSR----KVGFVDFATMEEASKAVAEMHGKPSPG 423
Query: 172 ----------------------------------------RMRKERAELYKNINDEVDEI 191
++R + KNI+ V+
Sbjct: 424 TQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNIDPAVELE 483
Query: 192 ELKQYFSQCGTISSVKIMRTDRGISKG 218
+L++ F Q G I S IMR D GISKG
Sbjct: 484 DLQRVFGQFGAIVSSNIMRDDAGISKG 510
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 119/293 (40%), Gaps = 48/293 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG-YGFVQYSTPESALDAIEKLQ 76
V+NL + L + FG + + +V QE G V E AL AI L
Sbjct: 156 IVRNLPADASEESLAALCRPFGRVGVATIV--QEAPEDAPMGVVCLDRFEDALTAIRALH 213
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFN-------NLYVKNLDDDMTEEILVEKFSEFGK 129
G+ + +L V RA+R E + L +KN+D DM ++ L E F+ FG
Sbjct: 214 GSKLGSNQLSVTFPATRAERECESAVAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGT 273
Query: 130 ITSLVISKDANGTSKGFG----------SKVLYVARAQK--------------------- 158
I SL I +D G SKG+G SK + Q
Sbjct: 274 IISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIFTSSEHDGM 333
Query: 159 -KAERKAILR--AQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
KA R A +R A+ R+ + R L +N+ + +DE +L+ F+ G I + ++R D G
Sbjct: 334 FKANRVAEVRHHAEVARIAQFRKNLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMG 393
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQVYQAP 267
S+ T E + + M+ K PG T P+ TL RA P
Sbjct: 394 RSRKVGFVDFATMEEASKAVAEMHGKPSPG---TQMPMTVTLSHRARDAQDPP 443
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 42/262 (16%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78
VKNL +D+ +L IF +FG + KV S G G V Y + + A A+ ++ G
Sbjct: 83 VKNLDPRMDDQQLRDIFGEFGTMTLCKV-----ASSIGVGLVTYESFDDAHAAMTQVNGM 137
Query: 79 TVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD 138
+ ++ V R+ E S L V+NL D +EE L FG++ I ++
Sbjct: 138 YLNGQQVQV-------HRLPERPS---LIVRNLPADASEESLAALCRPFGRVGVATIVQE 187
Query: 139 ANGTS----------------------KGFGSKVLYVARAQKKAERKAILRAQFERMRKE 176
A + GS L V +AER+ A +R+ +
Sbjct: 188 APEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAEREC-ESAVAQRLERL 246
Query: 177 RAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235
+ +L KN++ ++D+ +L++ F+ GTI S+ IMR + G SKG+ +A + E S +
Sbjct: 247 QGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGF-VAYSTTEAAS--K 303
Query: 236 IMYAKQGPGLASTIFPVHPTLY 257
M A G P+ T++
Sbjct: 304 AMAATHGQTFDRLTRPLDVTIF 325
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++NL +ID +L +F+ FG I++ V+ G+S+ GFV ++T E A A+ ++
Sbjct: 357 NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEM 416
Query: 76 QG--ATVERMELYVGPFIRRADRIQEGSSFNN-----------------------LYVKN 110
G + +M + V RA Q+ + N +YVKN
Sbjct: 417 HGKPSPGTQMPMTVT-LSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKN 475
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
+D + E L F +FG I S I +D G SKG G
Sbjct: 476 IDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIG 512
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 75/138 (54%), Gaps = 11/138 (7%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
+ +V NL + + +KL +F+ G I ++ +V ++ + GFV + P S ++ E+
Sbjct: 636 SVYVANLPANYNYVKLMALFADCGKIVTT--IVPRDFST--VGFVCFDQPAS-VELAERF 690
Query: 76 QGATVERMELYVGPFIRRAD------RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
G +E ELYV F + D E + ++ LY+ N+D + +E+ + E + +G
Sbjct: 691 HGHVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDKVRELCAPYGT 750
Query: 130 ITSLVISKDANGTSKGFG 147
+T++ + + A+GTS+GF
Sbjct: 751 LTAVHVRRRADGTSRGFA 768
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 33/236 (13%)
Query: 3 STPNSEARLSGI--GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
S P+ R S I + +KNL +I+ L +FS FG I SS+ + +Q + V
Sbjct: 544 SLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSRTIETQPRAA----LV 599
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+ + E+ +AI + GA V + + P++R+ R ++YV NL + L
Sbjct: 600 DFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR--------SVYVANLPANYNYVKL 651
Query: 121 VEKFSEFGKITSLVISKDANGT-------------SKGFGSKV-----LYVARAQKKAER 162
+ F++ GKI + ++ +D + ++ F V LYV+R + +
Sbjct: 652 MALFADCGKIVTTIVPRDFSTVGFVCFDQPASVELAERFHGHVLEGEELYVSRFPLQTDP 711
Query: 163 KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
A E + N++ E E ++++ + GT+++V + R G S+G
Sbjct: 712 APPPHATSE-VAPYHILYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRG 766
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYST 64
P++E ++ +VKN+ ++ L ++F +FG I SS ++ G SKG G V Y
Sbjct: 459 PDAEGQIRPRKLIYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLH 518
Query: 65 PESALDAIEKLQG----ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
++A A+ + G AT + + + + R I+ + +L +KNL+ + L
Sbjct: 519 ADAARAAVAAMDGKRLTATGQPLRVSLPDPRDRFSPIR----YASLIIKNLEQSINLSAL 574
Query: 121 VEKFSEFGKITS 132
+ FS FG I S
Sbjct: 575 RDLFSPFGCILS 586
>gi|385301748|gb|EIF45916.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 717
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
Query: 4 TPNSEARLSG-IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
T +SE +L+ I + +++ L TI + L++IF +G++QS KV+ G SKGYGFV
Sbjct: 116 TIDSEYKLNPPIHHLYIRGLLPTIRSEDLYKIFHPYGEVQSCKVIYDDYGFSKGYGFVNL 175
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMTEE 118
+ A AI+ L G +V L+V + + DR+++ +++NLYVKN+ ++E
Sbjct: 176 ANRMQADRAIKGLNGQSVAGNNLFVNHHVSKTDRLKDMEIRRHNYSNLYVKNIPPKYSKE 235
Query: 119 ILVEKFSEFGKITSLVISKDANG-TSKGFG 147
L F++FG I S+ + NG +KG+G
Sbjct: 236 DLSSLFNKFGTIDSVFLPHGENGEENKGYG 265
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPE 66
E R N +VKN+ L +F+KFG I S + + G+ +KGYGF+ + +
Sbjct: 214 EIRRHNYSNLYVKNIPPKYSKEDLSSLFNKFGTIDSVFLPHGENGEENKGYGFINFRYHK 273
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFN 104
A+ A +++ E E Y I RA+R +E S ++
Sbjct: 274 DAVQAEQEMN--NFELQEGYKIE-ISRAERKRERSIYS 308
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 76 MWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 134
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSF 103
+ ESA AI + G + +++VG F +R E ++
Sbjct: 135 HFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 5 YVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALETLN 64
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 65 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKSIDNKALYNIFSAFGNIL 117
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 118 SCKVACDEKGP-KGYG 132
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 425 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKGP-KGYGFV 483
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR 96
+ ESA AI+ + G + +++VG F +R
Sbjct: 484 HFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKER 519
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 354 YVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLN 413
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 414 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSTFGNIL 466
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKA-ILRAQFERMRKERAELYKNINDEVDE 190
S ++ D G KG+G + Q+ AER ++ F RK +K+ + E +
Sbjct: 467 SCKVACDEKG-PKGYG---FVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKS-HKERES 521
Query: 191 IELKQYFSQCGTISSVKIMRTDRGI 215
Q + G + + K + RG+
Sbjct: 522 WSDPQLPAWGGALRTPKSVAASRGL 546
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G+I S+ I +D T + G YV Q ++A
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD-KITRRSLG--YAYVNYQQPVDAKRA 408
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 409 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSC 468
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 469 KVACDEKG 476
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 35/229 (15%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN +KNL DN L+ F FG I S KVV + + G G++QY P+ A AI+
Sbjct: 107 GNIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQM 166
Query: 75 LQGATVERMELYVGPFI----RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
+ + +L I R R F N+YVKN +TEE + K E+G++
Sbjct: 167 INKIVLNGKKLCATQCIPNDKREKKRENVAKIFTNIYVKNFPAGITEEEIEAKLKEYGEL 226
Query: 131 TSLVISKDANGTSKGF----------------------------GSKVLYVARAQKKAER 162
TS + + +G +GF G++ LYV RA+ K ER
Sbjct: 227 TSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEALHDKPFPGYPEGTENLYVQRAKLKNER 286
Query: 163 KAILRAQFERM--RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
+ F ++ + R +Y N+ E++E ++ +YFS+ G I + K+
Sbjct: 287 VEEMLEYFSQVPEHERRRNIYITNLPGELNEEDVVKYFSKYGPIVTYKL 335
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTP 65
E ++ +V ++ +L QIFSK G I + ++ + K K Y +V +
Sbjct: 12 EGQIGKQNTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDE 71
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
S AIE ++ ++ V PF + + G+ N+ +KNL + + L + F
Sbjct: 72 SSVPIAIETFNFYSLHGSQIRVMPFNKESVV---GNREGNIVIKNLPKETDNQTLYDTFI 128
Query: 126 EFGKITSLVISKDANGTSKGFG------SKVLYVA---------RAQKKAERKAILRAQF 170
FG I S + K+ G G KV VA +K + I +
Sbjct: 129 VFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKR 188
Query: 171 ERMRKERAELYKNI---------NDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCM 221
E+ R+ A+++ NI +E E +LK+Y G ++S RTD G +G
Sbjct: 189 EKKRENVAKIFTNIYVKNFPAGITEEEIEAKLKEY----GELTSFLAPRTDSGEMRGFAF 244
Query: 222 AIAQTKRERTSYLRIMYAKQGPG 244
A QT + + ++ K PG
Sbjct: 245 ANYQTHEMAAAAIEALHDKPFPG 267
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN + I ++ ++G++ S + G+ +G+ F Y T E A AIE L
Sbjct: 201 NIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEAL 260
Query: 76 Q-----GATVERMELYVGPFIRRADRIQEGSSF----------NNLYVKNLDDDMTEEIL 120
G LYV + +R++E + N+Y+ NL ++ EE +
Sbjct: 261 HDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRRNIYITNLPGELNEEDV 320
Query: 121 VEKFSEFGKITSLVISKDA-NGTSKGF 146
V+ FS++G I + + DA N S G+
Sbjct: 321 VKYFSKYGPIVTYKLGTDAKNNRSYGY 347
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV + T E+A
Sbjct: 7 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 65
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQE 99
AIEK+ G + +++VG F R +R E
Sbjct: 66 RAIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 40.4 bits (93), Expect = 1.5, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYV 153
AD S N+++KNLD + + L + FS FG I S + D NG SKG+G +V
Sbjct: 2 ADPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG----FV 56
Query: 154 ARAQKKAERKAI 165
++A +AI
Sbjct: 57 HFETQEAAERAI 68
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQG 77
+ T E+A AIEK+ G
Sbjct: 144 HFETQEAAERAIEKMNG 160
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY +V + P E AL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + ++G V M P +R+ S N+++KNLD + + L + FS F
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK-------SGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
G I S + D NG SKG+G +V ++A +AI
Sbjct: 123 GNILSCKVVCDENG-SKGYG----FVHFETQEAAERAI 155
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 52/177 (29%)
Query: 54 SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVK 109
SKGYGFV + T E+A AIEK+ G + +++VG F R +R E F N+Y+K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------------- 147
N +DM +E L + F +FG S+ + D +G SKGFG
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 148 -------------------------SKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
+K LYVA AQ+K ER+A L Q+ +RM RA
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRA 267
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ------- 61
AR N ++KN +D+ +L +F KFG S KV+ + GKSKG+GFV
Sbjct: 139 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 198
Query: 62 -----------------YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFN 104
+S+PE A A+ ++ G V LYV R+ +R +
Sbjct: 199 QKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER---QAHLT 255
Query: 105 NLYVKNL 111
N Y++ +
Sbjct: 256 NQYMQRM 262
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +++D+ LK F + G SVK+M
Sbjct: 122 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 177
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 178 TDESGKSKG 186
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+GN F+ L + ++ L F +FG I S K V+ G+ +G+GFV + P+ A
Sbjct: 162 RRSGVGNIFISGLPADTTSVHLRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAE 221
Query: 70 DAIEKLQG--ATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEK 123
AI + G A +R +L V PF R R QE +F N+YVK+L D EE L +
Sbjct: 222 RAIAEANGKDAGGDR-KLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKL 280
Query: 124 FSEFGKITSLVI 135
F +G ITS +
Sbjct: 281 FEPYGDITSKAL 292
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 19/244 (7%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPE 66
E R N +VK+L D +L ++F +GDI S + + + + YGFV ++ E
Sbjct: 254 EERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTE 313
Query: 67 SALDAIEKLQGATVERMELYV-GPFIRRADRIQE---------GSSFNNLYVKNLDDDMT 116
+A +E +G +R YV G ++++ GS +++ D ++
Sbjct: 314 AAQKCVE--EGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 371
Query: 117 EEILVEKFSEFGKITSLV-ISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRK 175
IL ++ E ++ + + + LYV RAQKK ER LR + + R+
Sbjct: 372 GFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQERRR 431
Query: 176 ERAE-----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRER 230
E + KN N+ V E +L+++F +CG + SVK+MR G+S+ T+ E
Sbjct: 432 ELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEA 491
Query: 231 TSYL 234
S +
Sbjct: 492 ESAI 495
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAI---- 72
+V +L+ ++ +L +FS G + S +V Q +S GYG+V ++ E A A+
Sbjct: 82 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQLN 141
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M++ P RR S N+++ L D T L + F +FGKI
Sbjct: 142 FHDLHGRHIRIMKVERDPKKRR-------SGVGNIFISGLPADTTSVHLRDTFEQFGKIL 194
Query: 132 SLVISKDANGTSKGFG------SKVL--YVARAQKK---AERKAIL-----RAQFERMRK 175
S D +G +GFG KV +A A K +RK + R Q E+ ++
Sbjct: 195 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 254
Query: 176 ERAELYKNI-----NDEVDEIELKQYFSQCGTISSVKIMRT 211
ER + + N+ + DE EL + F G I+S K +RT
Sbjct: 255 ERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITS-KALRT 294
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKN + L + F + G + S KV+ +EG S+ +GFV ++T E A AI K
Sbjct: 438 GNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAK 497
Query: 75 LQGATVERMELYVGPFIRRADR 96
++ +YV + R +R
Sbjct: 498 KNRQPLQDRPIYVAFHLTRQER 519
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
N VKNL + +L F +FGDIQS K+ +G S+GY F+Q+ + E A A+
Sbjct: 171 ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNA 230
Query: 75 LQGATVERMELYVGPFIRRADRIQ-EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+ A ++ ++ + ++A R + + FNNL+VKNL ++ L F +FG+I S+
Sbjct: 231 MNQAEIKGKKIEINRHEKKATRENPQQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIESV 290
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
+ +D G K +G YV + A+L
Sbjct: 291 TVQRDEQGNLKDYG----YVCFKEPDHAEAAVLE 320
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 34/203 (16%)
Query: 41 IQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
++S+KVV+ + K GYG++Q+++ E A ++ + + L + + + D +
Sbjct: 111 LKSAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVSKFDYNPK 170
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------ 147
NL VKNLD ++T++ L + F +FG I SL + +G+S+G+
Sbjct: 171 A----NLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEK 226
Query: 148 -----------SKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQY 196
K + + R +KKA R+ + +F + KN+ D+ +LK
Sbjct: 227 ALNAMNQAEIKGKKIEINRHEKKATRENPQQTKFNNL------FVKNLPKGTDDDQLKGL 280
Query: 197 FSQCGTISSVKIMRTDRGISKGH 219
F + G I SV + R ++G K +
Sbjct: 281 FGKFGEIESVTVQRDEQGNLKDY 303
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVKNL D+ +L +F KFG+I+S V ++G K YG+V + P+ A A+ ++
Sbjct: 262 NLFVKNLPKGTDDDQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEM 321
Query: 76 QGATVERMELYVGPFIRRAD-RIQEGSSFN------------NLYVKNLDDDMTEEILVE 122
++ L V I + D +GS N N+Y+K + +++TEE L +
Sbjct: 322 NKKQIDDQFLIVNQHISKKDNEPTQGSRLNPITQNLNKTFNSNIYIKFIPNEVTEEELRK 381
Query: 123 KFS-EFGKITSLVISK 137
FS + I S+ ++K
Sbjct: 382 TFSMKDANIVSIKLTK 397
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 42/247 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
WS + + R N FVKN+ T+ ++ +F FG+I S K+ V++ G S G+G+V
Sbjct: 87 FWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVNENGASNGFGYV 146
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
+Y T E+AL A+E A + ++ FI Q + NLYV N+D + EE
Sbjct: 147 KYRTIEAALKAVE---NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQF 203
Query: 121 VEKFSEFG--------KITSLVISKDANGTSKGFGS------------------------ 148
V+ F FG K L SKD T+ GF
Sbjct: 204 VKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEI 263
Query: 149 -KVLYVARAQKKAE---RKAILRAQFERMRKERAELYKNIND---EVDEIELKQYFSQCG 201
V Y+++ ++K E + + A + KE K ND + E++ F+ CG
Sbjct: 264 KVVYYMSKKERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCG 323
Query: 202 TISSVKI 208
I S++I
Sbjct: 324 EIYSIRI 330
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 16/199 (8%)
Query: 17 AFVKNLASTI-DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
FV L + ++L +I +KF +S V E +V +T E+A AIE +
Sbjct: 15 VFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAIETM 74
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
GA ++ V F D Q + NL+VKN+ ++++ + + F FG+I S+ +
Sbjct: 75 NGALIDGKP--VNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKL 132
Query: 136 SKDANGTSKGFG-SKVLYVARAQKKAERKAILR----------AQFERMRK-ERAELY-K 182
S + NG S GFG K + A K E A ++ A+FE+ K ++ LY
Sbjct: 133 SVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVS 192
Query: 183 NINDEVDEIELKQYFSQCG 201
NI+ V+E + +YF G
Sbjct: 193 NIDKSVNEEQFVKYFETFG 211
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVK+L ++ L +FSK+G + SSKV++ +G S GYGFV++S+P+ + AIE+L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
G + +L + + NNL++K L D+T++ L + F FGKI +
Sbjct: 170 DGYQYQNKKL-LCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKV 228
Query: 136 SKDANGTSKGFG 147
D NG SK G
Sbjct: 229 MLDHNGQSKFAG 240
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N FV +L +D+ L Q+FS+FG +QS +V+ ++ G++KGYGFV++ + AL ++
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 75 LQG 77
+ G
Sbjct: 830 MNG 832
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L T+D L ++FSKFG + + + ++G+S+GY + + ESA+
Sbjct: 90 RRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLACDEKGESRGYARISFEREESAV 149
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+A++++ G ++ + V + + R + F NLYVKNLD +T+E L F+ +G
Sbjct: 150 EAVKEMDGMEMDGQAIVVERY-QAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFARYGA 208
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++S + +D G G + YVA + + +A+
Sbjct: 209 VSSAKV-RDLGGVQSEVG--LGYVAFEKHEDAARAV 241
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L + +L+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 11 WVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ-A 69
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G + L + R D + S NN+ VK L + L E FS+FG++T++ ++
Sbjct: 70 GTKLGSRYLRIAKIQR--DPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLA 127
Query: 137 KDANGTSKGFGSKVLYVARAQKKAER-----------KAILRAQF-----ERMRKERAEL 180
D G S+G+ + R + E +AI+ ++ + + K+ L
Sbjct: 128 CDEKGESRGYAR--ISFEREESAVEAVKEMDGMEMDGQAIVVERYQAQHRDELLKQFTNL 185
Query: 181 Y-KNINDEVDEIELKQYFSQCGTISSVKI 208
Y KN++ V + +L+ +F++ G +SS K+
Sbjct: 186 YVKNLDPAVTDEKLRAFFARYGAVSSAKV 214
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VK T+ + +L ++F ++G+ S V++ +E G S+ +GFV +A AI++
Sbjct: 289 NLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQE 348
Query: 75 LQGAT 79
L G+T
Sbjct: 349 LNGST 353
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 22/134 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYV-----ARAQK 158
+++V LD D+ E+ L + F G +TS+ + D A S G+G YV A A+K
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYG----YVNFQDPADAEK 64
Query: 159 KAERKAI-LRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSV 206
++ L +++ R+ K + + L K + VD LK+ FS+ G ++++
Sbjct: 65 ALDQAGTKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAI 124
Query: 207 KIMRTDRGISKGHC 220
+ ++G S+G+
Sbjct: 125 GLACDEKGESRGYA 138
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 45/252 (17%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
W+ + + R N FVKN+ +++ +L +FS G+ S K+ ++++G+S G+G+V
Sbjct: 96 FWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLNEKGESNGFGYV 155
Query: 61 QYSTPE---SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTE 117
+Y T E +ALD ++L+ E F+ + Q S NLYV N+D +TE
Sbjct: 156 KYRTLEATQAALDKSDELKAKIGEE------TFVVQKFEKQNKSRKTNLYVYNIDKKVTE 209
Query: 118 EILVEKFSEFGKITS--------LVISKDANGTSKGF---------------------GS 148
E ++ F FG I L +S++ T+KGF G+
Sbjct: 210 EQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNSVLGN 269
Query: 149 KVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVD-------EIELKQYFSQCG 201
+ VA + K ER+ +A+ ++ YK+ N VD E E+++ + G
Sbjct: 270 GEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEG 329
Query: 202 TISSVKIMRTDR 213
I S+ I DR
Sbjct: 330 EIYSLSIRWVDR 341
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ++D L ++FSKFG + + + ++G+S+GY + + ESA+
Sbjct: 90 RRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAV 149
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
DA+ ++ G ++ + V + + R + F NLYVKNLD +T+E L F+++G+
Sbjct: 150 DAVREMDGMEMDGQAIVVERY-QAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKYGE 208
Query: 130 ITS 132
++S
Sbjct: 209 VSS 211
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L + KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 11 WVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ-A 69
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G+ + L + R D + S NN+ VK L + L E FS+FG++T++ ++
Sbjct: 70 GSKLGSRYLRIAKIQR--DPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 137 KDANGTSKGFGSKVLYVARAQKKAER---------KAILRAQF-----ERMRKERAELY- 181
D G S+G+ + A R +AI+ ++ + + K+ LY
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELLKQFTNLYV 187
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN++ V + +L+ +F++ G +SS K+
Sbjct: 188 KNLDPAVTDEKLRAFFAKYGEVSSAKV 214
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VK T+ + +L ++F ++G+ S V++ +E G S+ +GFV +A AI++
Sbjct: 289 NLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQE 348
Query: 75 LQGAT 79
L G+T
Sbjct: 349 LNGST 353
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYV-----ARAQK 158
+++V LD D+ E+ L + F G +TS+ + D A S G+G YV A A+K
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYG----YVNFQDPADAEK 64
Query: 159 KAERK-AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSV 206
++ + L +++ R+ K + + L K + VD LK+ FS+ G ++++
Sbjct: 65 ALDQAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAI 124
Query: 207 KIMRTDRGISKGHC 220
+ ++G S+G+
Sbjct: 125 GLACDEKGESRGYA 138
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I S+VV G S+GYGFV+YS P A +AI++
Sbjct: 297 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 356
Query: 75 LQGATVE--RMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G VE +E+ V F D Q+ S LYV NL M + L+ F FG+
Sbjct: 357 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 416
Query: 130 ITSLVISKD-ANGTSKGFG 147
+T+ ++KD G SKG+G
Sbjct: 417 VTNAKVAKDHTTGLSKGYG 435
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS+P A +A+ L
Sbjct: 394 YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLN 453
Query: 77 GATVE--RMELYV-------------GPFIRRADRIQEGSS--------FNNLYVKNLDD 113
G V+ ++E+ V P R ++ S+ +NLYV N+
Sbjct: 454 GRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPS 513
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG 147
+ + LVE F FGKIT + D + ++KG+G
Sbjct: 514 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 548
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAI 72
+ N +V N+ S+ID KL ++F FG I ++VV + +KGYGF++++ ESA AI
Sbjct: 503 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 562
Query: 73 EKLQGATV--ERMELYVGPFIRRA--DRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSE 126
+ GA V E + + V A +Q N LY+ NL MT + +V F+
Sbjct: 563 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 622
Query: 127 FGKITSLVIS 136
FG+IT ++++
Sbjct: 623 FGQITKVLMN 632
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S++ + +F FG +VV ++ + + YG V++ P A AI+
Sbjct: 688 MANLYVGRVPSSLTEDQFIDLFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAID 742
Query: 74 KLQGATVERMELYV-------------GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
L G + L V G + ++G NLYV +L + E
Sbjct: 743 HLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNER 802
Query: 120 LVEKFSEFGKIT-SLVISKDANGTSKGFG 147
L++ F G+IT + V+ + G SKGFG
Sbjct: 803 LIDLFLPCGQITQAKVVVERYTGVSKGFG 831
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V +L S ++N +L +F G I +KVVV + G SKG+GFV+++ SA A+
Sbjct: 788 NLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTH 847
Query: 75 LQG 77
+ G
Sbjct: 848 MNG 850
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 50/239 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ NL ++ K+ +F+ FG I +KV+++ E Y V Y+ SA A++ + G
Sbjct: 603 YITNLPRSMTADKMVNLFAPFGQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDG 655
Query: 78 ATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEKFSE 126
VE L V +R++ +S NLYV + +TE+ ++ F
Sbjct: 656 YMVEGKRLVV----KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 711
Query: 127 FGKIT------------------SLVISKDANGTSKGFGSKVLYVARAQKKAER---KAI 165
FG++ S + + G +L V A AE K
Sbjct: 712 FGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGA 771
Query: 166 LRAQF---ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR--GISKG 218
L +Q E+ + + LY ++ V+ L F CG I+ K++ +R G+SKG
Sbjct: 772 LTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV-VERYTGVSKG 829
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I S+VV G S+GYGFV+YS P A +AI++
Sbjct: 298 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 357
Query: 75 LQGATVE--RMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G VE +E+ V F D Q+ S LYV NL M + L+ F FG+
Sbjct: 358 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 417
Query: 130 ITSLVISKD-ANGTSKGFG 147
+T+ ++KD G SKG+G
Sbjct: 418 VTNAKVAKDHTTGLSKGYG 436
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS+P A +A+ L
Sbjct: 395 YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLN 454
Query: 77 GATVE--RMELYVG--PFIRRADRIQEGSS--------FNNLYVKNLDDDMTEEILVEKF 124
G V+ ++E+ V P ++ S+ +NLYV N+ + + LVE F
Sbjct: 455 GRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELF 514
Query: 125 SEFGKITSLVISKDANG-TSKGFG 147
FGKIT + D + ++KG+G
Sbjct: 515 LPFGKITHARVVADPDTFSAKGYG 538
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAI 72
+ N +V N+ S+ID KL ++F FG I ++VV + +KGYGF++++ ESA AI
Sbjct: 493 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 552
Query: 73 EKLQGATV--ERMELYVGPFIRRA--DRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSE 126
+ GA V E + + V A +Q N LY+ NL MT + +V F+
Sbjct: 553 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 612
Query: 127 FGKITSLVIS 136
FG+IT ++++
Sbjct: 613 FGQITKVLMN 622
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S++ + +F FG +VV ++ + + YG V++ P A AI+
Sbjct: 678 MANLYVGRVPSSLTEDQFIDLFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAID 732
Query: 74 KLQGATVERMELYV-------------GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
L G + L V G + ++G NLYV +L + E
Sbjct: 733 HLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNER 792
Query: 120 LVEKFSEFGKIT-SLVISKDANGTSKGFG 147
L++ F G+IT + V+ + G SKGFG
Sbjct: 793 LIDLFLPCGQITQAKVVVERYTGVSKGFG 821
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 50/239 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ NL ++ K+ +F+ FG I +KV+++ E Y V Y+ SA+ A++ + G
Sbjct: 593 YITNLPRSMTADKMVNLFAPFGQI--TKVLMNLE-----YSLVWYADAPSAIKAVQHMDG 645
Query: 78 ATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEKFSE 126
VE L V +R++ +S NLYV + +TE+ ++ F
Sbjct: 646 YMVEGKRLVV----KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 701
Query: 127 FGKIT------------------SLVISKDANGTSKGFGSKVLYVARAQKKAER---KAI 165
FG++ S + + G +L V A AE K
Sbjct: 702 FGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGA 761
Query: 166 LRAQF---ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR--GISKG 218
L +Q E+ + + LY ++ V+ L F CG I+ K++ +R G+SKG
Sbjct: 762 LTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV-VERYTGVSKG 819
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V +L S ++N +L +F G I +KVVV + G SKG+GFV+++ SA A+
Sbjct: 778 NLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTH 837
Query: 75 LQG 77
+ G
Sbjct: 838 MNG 840
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ++D L ++FSKFG + + + ++G+S+GY + + ESA+
Sbjct: 90 RRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAV 149
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
DA+ ++ G ++ + V + + R + F NLYVKNLD +T+E L F+++G+
Sbjct: 150 DAVREMDGMEMDGQAIVVERY-QAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKYGE 208
Query: 130 ITS 132
++S
Sbjct: 209 VSS 211
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L + KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 11 WVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ-A 69
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G+ + L + R D + S NN+ VK L + L E FS+FG++T++ ++
Sbjct: 70 GSKLGSRYLRIAKIQR--DPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 137 KDANGTSKGFGSKVLYVARAQKKAER---------KAILRAQF-----ERMRKERAELY- 181
D G S+G+ + A R +AI+ ++ + + K+ LY
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELLKQFTNLYV 187
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN++ V + +L+ +F++ G +SS K+
Sbjct: 188 KNLDPAVTDEKLRAFFAKYGEVSSAKV 214
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VK T+ + +L ++F ++G+ S V++ +E G S+ +GFV +A AI++
Sbjct: 289 NLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQE 348
Query: 75 LQGAT 79
L G+T
Sbjct: 349 LNGST 353
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYV-----ARAQK 158
+++V LD D+ E+ L + F G +TS+ + D A S G+G YV A A+K
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYG----YVNFQDPADAEK 64
Query: 159 KAERK-AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSV 206
++ + L +++ R+ K + + L K + VD LK+ FS+ G ++++
Sbjct: 65 ALDQAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAI 124
Query: 207 KIMRTDRGISKGHC 220
+ ++G S+G+
Sbjct: 125 GLACDEKGESRGYA 138
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ++D L ++FSKFG + + + ++G+S+GY + + ESA+
Sbjct: 90 RRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAV 149
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
DA+ ++ G ++ + V + + R + F NLYVKNLD +T+E L F+++G+
Sbjct: 150 DAVREMDGMEMDGQAIVVERY-QAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKYGE 208
Query: 130 ITS 132
++S
Sbjct: 209 VSS 211
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L + KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 11 WVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ-A 69
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
G+ + L + R D + S NN+ VK L + L E FS+FG++T++ ++
Sbjct: 70 GSKLGSRYLRIAKIQR--DPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 137 KDANGTSKGFGSKVLYVARAQKKAER---------KAILRAQF-----ERMRKERAELY- 181
D G S+G+ + A R +AI+ ++ + + K+ LY
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELLKQFTNLYV 187
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN++ V + +L+ +F++ G +SS K+
Sbjct: 188 KNLDPAVTDEKLRAFFAKYGEVSSAKV 214
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VK T+ + +L ++F ++G+ S V++ +E G S+ +GFV +A AI++
Sbjct: 289 NLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQE 348
Query: 75 LQGAT 79
L G+T
Sbjct: 349 LNGST 353
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYV-----ARAQK 158
+++V LD D+ E+ L + F G +TS+ + D A S G+G YV A A+K
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYG----YVNFQDPADAEK 64
Query: 159 KAERK-AILRAQFERMRKERAE-----------LYKNINDEVDEIELKQYFSQCGTISSV 206
++ + L +++ R+ K + + L K + VD LK+ FS+ G ++++
Sbjct: 65 ALDQAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAI 124
Query: 207 KIMRTDRGISKGHC 220
+ ++G S+G+
Sbjct: 125 GLACDEKGESRGYA 138
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAI 72
+ N +V+NL ++ KL +F +G + S+KV + G SKGYGFV++S P A A+
Sbjct: 422 MSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAV 481
Query: 73 EKLQGATVERMELYV------GPFIRRAD-RIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
+L G VE ++ V P A+ R + +NLYV N+ M + LVE F
Sbjct: 482 IELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFL 541
Query: 126 EFGKITSLVISKDANGTSKGFG 147
FG+IT ++ + +N +SKG+G
Sbjct: 542 PFGRITHAMVVEQSNNSSKGYG 563
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 2 WSTPNSEARL-SGIG-NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYG 58
+S+ + E +L G G N FV NL ++ + KL ++F FG I S+VV G SKGYG
Sbjct: 214 FSSAHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYG 273
Query: 59 FVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDD 114
FVQYS P A +AI+ + G VE L V R A GS+ + LYV NL
Sbjct: 274 FVQYSDPRYAAEAIKHMNGRMVEGRMLEV----RLAGAPSSGSTKEMDMSKLYVCNLPLL 329
Query: 115 MTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
+ E+ L + F +G++TS+ + +D A G SKG+G
Sbjct: 330 LHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYG 363
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL + KLH +F +G + S KV+ G SKGYGFV+YS P+ A AI +L
Sbjct: 322 YVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLN 381
Query: 77 GATVE--RMELYVGPF-----------IRRAD-RIQEGSSFNNLYVKNLDDDMTEEILVE 122
G +E +ME+ V I D ++ + +N+YV+NL M + L+
Sbjct: 382 GHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLN 441
Query: 123 KFSEFGKITSLVISKD-ANGTSKGFG 147
F +GK+TS ++ D +G SKG+G
Sbjct: 442 LFLPYGKVTSAKVAMDYTSGISKGYG 467
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V N+ S+++ KL ++F FG I + VV SKGYGFV+++ A +A+
Sbjct: 519 MSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVA 578
Query: 74 KLQGATVERMELYV------------GPFIRRADRIQEGSSFNN--LYVKNLDDDMTEEI 119
+ GA +E + V I NN LYV NL M+ +
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADK 638
Query: 120 LVEKFSEFGKITSLVI 135
LV F FG+I +V+
Sbjct: 639 LVSLFMPFGQIDRVVM 654
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
TP +E R + N +V L + KL ++F G I +KVVV + G SKG+GFV++
Sbjct: 803 TPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRF 862
Query: 63 STPESALDAIEKLQG 77
+ SA AI + G
Sbjct: 863 ADAYSAATAITHMNG 877
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 96 RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT-SLVISKDANGTSKGFG----SKV 150
+++EG+ NL+V NL + L+E F FG+I S V+ G+SKG+G S
Sbjct: 222 KLKEGNG-TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDP 280
Query: 151 LYVARAQKKAERKAILRAQFE-----------RMRKERAELY-KNINDEVDEIELKQYFS 198
Y A A K + + E + ++LY N+ + E +L F
Sbjct: 281 RYAAEAIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFV 340
Query: 199 QCGTISSVKIMRTD-RGISKGH 219
G ++SVK+MR G+SKG+
Sbjct: 341 PYGQVTSVKVMRDHATGLSKGY 362
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 35/156 (22%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S + +L QIF +G+I +K GYG ++Y+ SA AI+
Sbjct: 716 MANLYVGRVPSAVTCEQLVQIFCLYGEIVQAKKF------DAGYGMIRYANASSAAAAID 769
Query: 74 KLQG---------------------ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLD 112
L G AT R G R+ D NLYV L
Sbjct: 770 HLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQID-------MTNLYVGYLP 822
Query: 113 DDMTEEILVEKFSEFGKIT-SLVISKDANGTSKGFG 147
+T + L+E F G+IT + V+ G SKGFG
Sbjct: 823 PYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFG 858
>gi|412993650|emb|CCO14161.1| predicted protein [Bathycoccus prasinos]
Length = 499
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 106/233 (45%), Gaps = 29/233 (12%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N +V ++ +D +L +F KFG ++S ++ Q +SKGYGFV+Y E A++A EK
Sbjct: 97 NLYVWSIPRDMDERQLSTLFQKFGTVESCTIMRDVQTKQSKGYGFVKYVKFEDAVNAKEK 156
Query: 75 LQGATVERMELYV--------------GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
L G V+ +L + G I +N+YVK L D+ E IL
Sbjct: 157 LHGKFVKDKQLQIKFASTDSNGLMGVHGGMIGATGVDVASIPTDNVYVKGLPLDIDEGIL 216
Query: 121 VEKFSEFGKITSL-VISKDANGTSKGFGSKVLYVARAQKKAERKAI-----LRAQFERMR 174
EKF FGKI S VI+ A + G + V A K I + F +
Sbjct: 217 REKFGAFGKIVSCRVIATTALIRFETVGEAEVAVREANGKMIVSEIGGAMPVSVSFNAKQ 276
Query: 175 KERAEL-------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRG-ISKGH 219
+ A L NI +++E LK F +CG + SV IMR +SKG+
Sbjct: 277 QIMASLPTHSNLYVWNIPRDMEEGSLKHLFEECGEVESVNIMRDKMSQVSKGY 329
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEK 74
N +V N+ ++ L +F + G+++S ++ + + SKGYGFV++ E A AIEK
Sbjct: 287 NLYVWNIPRDMEEGSLKHLFEECGEVESVNIMRDKMSQVSKGYGFVKFIRYEEAEKAIEK 346
Query: 75 LQGATVERMELYVGPF-IRRADRIQEGSSF--------------------------NNLY 107
+ G V R +L P ++ A+ G + N+Y
Sbjct: 347 VSG-RVLREDLAHRPLQVKFANTDSSGVAGSSGRGGGEAGGGGGGVGGSAMTNPPSENIY 405
Query: 108 VKNLDDDMTEEILVEKFSEFGKITSLV 134
+K L D E LV F++FG+I S
Sbjct: 406 IKGLPTDSNENDLVNAFAQFGRIISCT 432
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I S+VV G S+GYGFV+YS P A +AI++
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 75 LQGATVE--RMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G VE +E+ V F D Q+ S LYV NL M + L+ F FG+
Sbjct: 270 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 130 ITSLVISKD-ANGTSKGFG 147
+T+ ++KD G SKG+G
Sbjct: 330 VTNAKVAKDHTTGLSKGYG 348
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 17/157 (10%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYS 63
P+ E ++ + +V NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS
Sbjct: 297 PSKETDMAKL---YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYS 353
Query: 64 TPESALDAIEKLQGATVE--RMELYVG--PFIRRADRIQEGSS--------FNNLYVKNL 111
+P A +A+ L G V+ ++E+ V P ++ S+ +NLYV N+
Sbjct: 354 SPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNM 413
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG 147
+ + LVE F FGKIT + D + ++KG+G
Sbjct: 414 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 450
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAI 72
+ N +V N+ S+ID KL ++F FG I ++VV + +KGYGF++++ ESA AI
Sbjct: 405 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 464
Query: 73 EKLQGATV--ERMELYVGPFIRRA--DRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSE 126
+ GA V E + + V A +Q N LY+ NL MT + +V F+
Sbjct: 465 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 524
Query: 127 FGKITSLVIS 136
FG+IT ++++
Sbjct: 525 FGQITKVLMN 534
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S++ + +F FG +VV ++ + + YG V++ P A AI+
Sbjct: 590 MANLYVGRVPSSLTEDQFIDLFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAID 644
Query: 74 KLQGATVERMELYV-------------GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
L G + L V G + ++G NLYV +L + E
Sbjct: 645 HLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNER 704
Query: 120 LVEKFSEFGKIT-SLVISKDANGTSKGFG 147
L++ F G+IT + V+ + G SKGFG
Sbjct: 705 LIDLFLPCGQITQAKVVVERYTGVSKGFG 733
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V +L S ++N +L +F G I +KVVV + G SKG+GFV+++ SA A+
Sbjct: 690 NLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTH 749
Query: 75 LQG 77
+ G
Sbjct: 750 MNG 752
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ NL ++ K+ +F+ FG I +KV+++ E Y V Y+ SA+ A++ + G
Sbjct: 505 YITNLPRSMTADKMVNLFAPFGQI--TKVLMNLE-----YSLVWYADAPSAIKAVQHMDG 557
Query: 78 ATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEKFSE 126
VE L V +R++ +S NLYV + +TE+ ++ F
Sbjct: 558 YMVEGKRLVV----KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 613
Query: 127 FGKI 130
FG++
Sbjct: 614 FGRV 617
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 84 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFV 142
Query: 61 QYSTPESALDAIEKLQG 77
+ T E+A AIE + G
Sbjct: 143 HFETHEAATRAIETMNG 159
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L++ FS G I S +V +S GY ++ + P E AL
Sbjct: 9 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERAL 68
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + E ++G + M P +R+ S N+++KNLDD + + L + FS F
Sbjct: 69 DTMNFEVIKGRPIRIMWSQRDPGLRK-------SGVGNVFIKNLDDSIDNKALYDTFSAF 121
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S + D NG S+G+G
Sbjct: 122 GNILSCKVVCDENG-SRGYG 140
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 6 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDV-ATRRSLGYA--YINFQQPA 62
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + KN++D +D L FS G
Sbjct: 63 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 122
Query: 202 TISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
I S K++ + G S+G+ +T T + M
Sbjct: 123 NILSCKVVCDENG-SRGYGFVHFETHEAATRAIETM 157
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE- 73
GN +KNL++ D+ LH FS FG+I S KV ++ +GK KG+GFVQ+ A A++
Sbjct: 106 GNIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALKF 165
Query: 74 ----KLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFG 128
++ G + ++E Y + +I+ GS +F N++ KN TE+ + + F G
Sbjct: 166 GTEMQMDGHAI-KVEKYEKNY-----KIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIG 219
Query: 129 KITSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAE 161
K++S + +GT +GFG + YV +AQ K +
Sbjct: 220 KVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQ 279
Query: 162 RKAILRAQFERMRKERAELYKNIN-----DEVDEIELKQYFSQCGTISSVKI 208
R L + FE++ +N+ + + E+++ FSQ G + SV +
Sbjct: 280 RLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCV 331
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 39/220 (17%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEGK----SKGYGFVQYSTPESALDAIEKLQGATVE----R 82
L++IFS G I + K+V + Y +V +S E AL+A+ KL V R
Sbjct: 32 LYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALEAVNKLNFFKVHDKEMR 91
Query: 83 MELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGT 142
+ LY I+ DR N+ +KNL D + L + FS FG+I S ++ ++ G
Sbjct: 92 VMLYDKERIKSMDR-------GNIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGK 144
Query: 143 SKGFGSKVLYVARAQKKAERKAI-----LRAQFERMRKERAE---------------LYK 182
KGFG +V K RKA+ ++ ++ E+ E +K
Sbjct: 145 CKGFG----FVQFKNKNGARKALKFGTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFK 200
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMA 222
N E E+K F G +SS G +G A
Sbjct: 201 NFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFA 240
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F KN T ++ IF G + S +G +G+GF Y A AI++L
Sbjct: 196 NVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDEL 255
Query: 76 QGATVERMELYVGPF-IRRADRIQE-----GSSFN-----------NLYVKNLDDDMTEE 118
G V + Y PF +++A Q+ S+F NLYV L + +E
Sbjct: 256 SGKDVFEGK-YPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYGKE 314
Query: 119 ILVEKFSEFGKITSLVISKD 138
+ E FS+FGK+ S+ + KD
Sbjct: 315 EVQELFSQFGKVISVCVGKD 334
>gi|403354844|gb|EJY76981.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 590
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 45/233 (19%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKF--GDIQ-SSKVVVSQEGKSKGYGFVQYSTPESALDA 71
N F+KNL +I + +L + FSK GD+ S+KV ++ + S+GYGFV +TPE A A
Sbjct: 101 NNLFIKNLDKSITSQQLDETFSKVLGGDVVVSAKVSINADYSSRGYGFVFLATPEQAEQA 160
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ A + V P+ + DR + +FNN+Y+KN + +E + + F ++G I
Sbjct: 161 L-----AKASEFKFEVHPY-QPKDRREIRKTFNNIYIKNFPSNWNKEKIEQIFGQYGTIK 214
Query: 132 SLVISK-DANGT---------------SKGFGSKV-----------------LYVARAQK 158
S VI GT +K +G K LYV A
Sbjct: 215 STVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALP 274
Query: 159 KAERKAILRAQFERMR--KERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K R+ + + R + K+R LY KN + E +LK YF + G I S+K+
Sbjct: 275 KTLREQEKKREQNRFKNSKKRCNLYVKNFPENTTEEQLKAYFEKYGEIESIKL 327
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 26/146 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG------YGFVQYST--- 64
N ++KN S + K+ QIF ++G I+S+ V + GK +G + FV Y
Sbjct: 186 FNNIYIKNFPSNWNKEKIEQIFGQYGTIKST---VIKMGKVQGTDQEAPFAFVCYEDKDN 242
Query: 65 ----PESALDAIEKLQGATVERMELYVGPFI----------RRADRIQEGSSFNNLYVKN 110
P+ AL+AI + + ++LYV + R +R + NLYVKN
Sbjct: 243 KEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKRCNLYVKN 302
Query: 111 LDDDMTEEILVEKFSEFGKITSLVIS 136
++ TEE L F ++G+I S+ ++
Sbjct: 303 FPENTTEEQLKAYFEKYGEIESIKLN 328
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 54/237 (22%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE- 73
GN +KNL++ D+ LH FS FG+I S KV + +GK KG+GFVQ+ A A++
Sbjct: 108 GNIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALKF 167
Query: 74 ----KLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFG 128
++ G + ++E Y + +I+ GS +F N++ KN TE+ L E F G
Sbjct: 168 GTEMQMDGHAI-KVEKYEKNY-----KIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIG 221
Query: 129 KITSLVISKDANGTSKGFG---------------------------SKVLYVARAQKKAE 161
K++S + +G +GFG + YV +AQ K +
Sbjct: 222 KVSSFYFATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQ 281
Query: 162 RKAILRAQFERMRKERAELYKNI----------NDEVDEIELKQYFSQCGTISSVKI 208
R L + FE++ +N+ +EV+E+ FSQ G I SV +
Sbjct: 282 RLDSLSSAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEEL-----FSQYGKIISVCV 333
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F KN ST +L +IF G + S +G +G+GF Y A AI++L
Sbjct: 198 NVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKAIDEL 257
Query: 76 QGATVERMELYVGPF-IRRADRIQE-----GSSFN-----------NLYVKNLDDDMTEE 118
G + + Y PF +++A Q+ S+F NLYV L +E
Sbjct: 258 SGKDIFEGK-YPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPSTYGKE 316
Query: 119 ILVEKFSEFGKITSLVISKD 138
+ E FS++GKI S+ + KD
Sbjct: 317 EVEELFSQYGKIISVCVGKD 336
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 47/195 (24%)
Query: 26 IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85
+D+ +L +F KFG S KV++ + G SKG+GFV + E A++++ G + R ++
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 86 YVGPFIRRADRIQEGSS-----FN-------------NLYVKNLDDDMTEEILVEKFSEF 127
Y I RA + E + F NLYVKNLDD + E L ++FS F
Sbjct: 61 Y----ISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPF 116
Query: 128 GKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKA 164
G IT + G S+GFG +K L VA AQ+K ER+A
Sbjct: 117 GTITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQA 175
Query: 165 ILRAQF-ERMRKERA 178
L Q+ +RM RA
Sbjct: 176 HLTNQYMQRMASVRA 190
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 60/208 (28%)
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
M +E L + F +FG S+ + D GTSKGFG K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTIS 204
Y++RA K AE + LR +FE M ++RA Y KN++D +DE L++ FS GTI+
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 205 SVKIMRTDRGISKGH----------------------------CMAIAQTKRERTSYLRI 236
K M + G S+G C+A+AQ K ER ++L
Sbjct: 121 GAKFM-MEGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTN 179
Query: 237 MYAKQGPGLASTIFPV-HPTLYQRALQV 263
Y ++ + + PV P Q LQV
Sbjct: 180 QYMQRMASVRAVPNPVILPATSQHLLQV 207
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
R G+ N +VKNL ID L + FS FG I +K ++ + G S+G+GFV++S+PE A
Sbjct: 88 TRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGTITGAKFMM-EGGPSEGFGFVRFSSPEEA 145
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V L V R+ +R
Sbjct: 146 TKAVTEMNGRIVATKPLCVALAQRKEER 173
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE- 73
N F+KNL + + LH F +FG I SSK+ Q G SKGYG++Q+ P+ + +AI
Sbjct: 88 ANLFIKNLPKSFTPINLHDSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILN 147
Query: 74 --------KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
K + + +L V +++ DR F N++ +NL D TEE + S
Sbjct: 148 SNDFQFDIKDEEESKNMKKLKVTSYVKPEDR---KPKFTNVFFRNLPLDFTEESFSKYAS 204
Query: 126 EFGKITSLVIS 136
EFGKITSL+++
Sbjct: 205 EFGKITSLILN 215
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 20/176 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK-- 74
+V NL ++ L IFS+ + +++V + + K +GYG+V Y+TPE A A+ +
Sbjct: 3 YVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREFN 62
Query: 75 ---LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L+G + M Y G + +E S NL++KNL T L + F FGKI
Sbjct: 63 HINLKGKPIRVMRSYSG-------KPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKIL 115
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRA---QFERMRKERAELYKNI 184
S IS D G SKG+G Y+ K +AIL + QF+ +E ++ K +
Sbjct: 116 SSKISFDQLGNSKGYG----YIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKL 167
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 48/75 (64%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG GN F+KNL +IDN ++ FS FG+I S KV +E SKGYGFV
Sbjct: 92 MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFV 151
Query: 61 QYSTPESALDAIEKL 75
+ T ESA AIEK+
Sbjct: 152 HFETEESAQKAIEKV 166
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESAL 69
+ + +V +L + L + FS G + S +V +S GY +V + P E AL
Sbjct: 17 MASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERAL 76
Query: 70 DAI--EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
D + + + G + M P +RR S N+++KNLD + + + + FS F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRR-------SGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
G I S ++ D SKG+G + +KA K ++
Sbjct: 130 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVMV 168
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +DA T + G YV Q +A
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAI-TRRSLG--YAYVNFQQPADAERA 75
Query: 165 ILRAQFE----------------RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSV 206
+ F+ MR+ A KN++ +D + FS G I S
Sbjct: 76 LDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSC 135
Query: 207 KIMRTDRGISKGH 219
K+ + SKG+
Sbjct: 136 KVANDEESNSKGY 148
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 39/243 (16%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
WS + + R N FVKN+ T+ ++ +F FG+I S K+ V++ G S G+G+V+
Sbjct: 90 WSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVNENGASNGFGYVK 149
Query: 62 YSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
Y T E+AL A+E A + ++ FI Q + NLYV N+D + EE V
Sbjct: 150 YRTIEAALKAVE---NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFV 206
Query: 122 EKFSEFG--------KITSLVISKDANGTSKGF---------------------GSKVLY 152
+ F FG K L D + T+ GF G +
Sbjct: 207 KYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIK 266
Query: 153 VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEI-------ELKQYFSQCGTISS 205
V ++ER + + ++ YK+ N ++ + E++ F+ CG I S
Sbjct: 267 VDYYMSRSERSRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYS 326
Query: 206 VKI 208
V++
Sbjct: 327 VRV 329
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 18 FVKNLASTI-DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L+ + ++L +I +KF +S V E +V +T E+A AIE +
Sbjct: 18 FVSSLSKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAIETMN 77
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
GA ++ V F D Q + NL+VKN+ ++++ + + F FG+I S+ +S
Sbjct: 78 GALIDGKT--VNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLS 135
Query: 137 KDANGTSKGFG-SKVLYVARAQKKAERKAILR----------AQFERMRK-ERAELY-KN 183
+ NG S GFG K + A K E A ++ A+FE+ K ++ LY N
Sbjct: 136 VNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSN 195
Query: 184 INDEVDEIELKQYFSQCG 201
I+ V+E + +YF G
Sbjct: 196 IDKSVNEEQFVKYFETFG 213
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+GN F+ L + ++ L F +FG I S K V+ G+ +G+GFV + P+ A
Sbjct: 153 RRSGVGNIFISGLPADTTSVHLRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAE 212
Query: 70 DAIEKLQG--ATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEK 123
AI + G A +R +L V PF R R QE +F N+YVK+L EE L +
Sbjct: 213 RAIAEANGKDAGGDR-KLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRGADEEELGKL 271
Query: 124 FSEFGKITSLVI 135
F +G ITS +
Sbjct: 272 FEPYGDITSKAL 283
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 25/247 (10%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPE 66
E R N +VK+L D +L ++F +GDI S + + + + YGFV ++ E
Sbjct: 245 EERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTE 304
Query: 67 SALDAIEKLQGATVERMELYV-GPFIRRADRIQE---------GSSFNNLYVKNLDDDMT 116
+A +E +G +R YV G ++++ GS +++ D ++
Sbjct: 305 AAQKCVE--EGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 362
Query: 117 EEILVEKFSEFGKITS----LVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFER 172
IL F E G+ T + + + LYV RAQKK ER LR + +
Sbjct: 363 GFIL---FKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQE 419
Query: 173 MRKER----AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTK 227
R+E LY KN N+ V E +L+++F +CG + SVK+MR G+S+ T+
Sbjct: 420 RRRELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATR 479
Query: 228 RERTSYL 234
E S +
Sbjct: 480 EEAESAI 486
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAI---- 72
+V +L+ ++ +L +FS G + S +V Q +S GYG+V ++ E A A+
Sbjct: 73 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQLN 132
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M++ P RR S N+++ L D T L + F +FGKI
Sbjct: 133 FHDLHGRHIRIMKVERDPKKRR-------SGVGNIFISGLPADTTSVHLRDTFEQFGKIL 185
Query: 132 SLVISKDANGTSKGFG------SKVL--YVARAQKK---AERKAIL-----RAQFERMRK 175
S D +G +GFG KV +A A K +RK + R Q E+ ++
Sbjct: 186 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 245
Query: 176 ERAELYKNI-----NDEVDEIELKQYFSQCGTISSVKIMRT 211
ER + + N+ DE EL + F G I+S K +RT
Sbjct: 246 ERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITS-KALRT 285
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN +VKN + L + F + G + S KV+ +EG S+ +GFV ++T E A AI K
Sbjct: 429 GNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAK 488
Query: 75 LQGATVERMELYVGPFIRRAD 95
++ +YV + R +
Sbjct: 489 KNRQPLQDRPIYVAFHLTRQE 509
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 74 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFV 132
Query: 61 QYSTPESALDAIEKLQG 77
+ ESA AI+ + G
Sbjct: 133 HFQKQESAERAIDAMNG 149
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V +L + L++ FS G I S ++ + +S GY +V Y P A A+E L
Sbjct: 3 YVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETLN 62
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G V M P +R+ S N+++KNL + + L FS FG I
Sbjct: 63 FDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 115
Query: 132 SLVISKDANGTSKGFG 147
S ++ D G KG+G
Sbjct: 116 SCKVACDEKG-PKGYG 130
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVK L + + +L +FS FG + S+KV+V +G S GYGFV++S+P + AI+ +
Sbjct: 70 NVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKKAIDNM 129
Query: 76 QGATVERMELYVGPFIRRADRIQEGSS---FNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
G + +L R ++ ++ NNL++K L ++++ L E FS FG+I
Sbjct: 130 DGFQLMHKKL----LCRLSNLYSNCNNKYPSNNLFLKPLPATLSDDQLKELFSPFGEILE 185
Query: 133 LVISKDANGTSK--GF--------GSKVLYVARAQKKAERKAILRAQF------ERMRKE 176
+ D NG SK GF +K + K + A L ++ + +RK+
Sbjct: 186 CKVMIDQNGNSKLAGFVRFCNEADATKAMQAMNGTKMKDSPAPLVVKYADNEHQKSLRKQ 245
Query: 177 R----------AELYKNINDEVDEIELKQYFS 198
R Y N D ++ QY+S
Sbjct: 246 RKYSHFINPHPVNPYYNYVDHYLYFQVPQYYS 277
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L +D+ L+++FS+FG +QS +V+ ++ G++KGYGFV++ + A+ ++ ++
Sbjct: 509 FVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEMN 568
Query: 77 GATVERMELYV 87
G V + L V
Sbjct: 569 GLQVGQKYLKV 579
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
N++VK L ++ + L FS FGK+ S + DA G S G+G +V + +KA
Sbjct: 70 NVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYG----FVRFSSPSESKKA 125
Query: 165 ILRAQ-FERMRKER----AELYKNINDE--------------VDEIELKQYFSQCGTISS 205
I F+ M K+ + LY N N++ + + +LK+ FS G I
Sbjct: 126 IDNMDGFQLMHKKLLCRLSNLYSNCNNKYPSNNLFLKPLPATLSDDQLKELFSPFGEILE 185
Query: 206 VKIMRTDRGISK 217
K+M G SK
Sbjct: 186 CKVMIDQNGNSK 197
>gi|403368329|gb|EJY83994.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 85/281 (30%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+K + + ++ F FG+I S+KV +S S+GYGFVQ++ E A + I+ G
Sbjct: 242 FIKGFSKQWTHKDFYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICDG 301
Query: 78 ATV---------------------ERME-----------------------------LYV 87
+ E++E L +
Sbjct: 302 KVILPFDSQRPHQAQLVDPSSVNLEQLEKPDAEISAFDDGKDQPSPKLKKSKKTVQPLKI 361
Query: 88 GPFIRRADRIQEGSS----------FNNLYVKNLDD-DMTEEILVEKFSEFGKITSLVIS 136
P+++ G S FNNL+VK D ++T E L E FS +G I S V+
Sbjct: 362 LPYVKAEKGANTGGSLGLGVTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMM 421
Query: 137 K--DANGTSKGFG-------------------SKVLYVARAQKKAERKAILRAQFERMRK 175
K D + G+G LYV RA KK +R ++ E+ +K
Sbjct: 422 KKQDNPDENSGYGFVCFEDSEGARRACENMHTKDGLYVKRALKKQQRLEEVKRLSEKYKK 481
Query: 176 --ERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
++ LY KN E E ELK+YF + G +++VKIMR +
Sbjct: 482 SMQKFNLYVKNFPLETTETELKEYFQRFGDVNNVKIMRKSK 522
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 14 IGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTPESALD 70
N FVK I + +L+++FS +G+I S+ ++ Q+ ++ GYGFV + E A
Sbjct: 387 FNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFEDSEGARR 446
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFN----------NLYVKNLDDDMTEEIL 120
A E + + LYV +++ R++E + NLYVKN + TE L
Sbjct: 447 ACENMH----TKDGLYVKRALKKQQRLEEVKRLSEKYKKSMQKFNLYVKNFPLETTETEL 502
Query: 121 VEKFSEFGKITSLVISKDA 139
E F FG + ++ I + +
Sbjct: 503 KEYFQRFGDVNNVKIMRKS 521
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ++D+ KL ++FS++G++ SSKV+++ +G S+G+GFV YS PE AL A+ ++
Sbjct: 52 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM 111
Query: 76 QGATVERMELYVGPFIRRADR 96
G + R LY+ R+ DR
Sbjct: 112 NGKMIGRKPLYIALAQRKEDR 132
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 38/141 (26%)
Query: 140 NGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIE 192
NG S G VLYV RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +
Sbjct: 9 NGIS--LGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 66
Query: 193 LKQYFSQCGTISSVKIMRTDRGISKGHC----------------------------MAIA 224
LK+ FS+ G ++S K+M +G+S+G +A+A
Sbjct: 67 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 126
Query: 225 QTKRERTSYLRIMYAK-QGPG 244
Q K +R ++L+ ++++ + PG
Sbjct: 127 QRKEDRRAHLQALFSQIRAPG 147
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 37/141 (26%)
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMT 116
A+EK+ G ++ LYVG ++++R +E S NLY+KNLDD +
Sbjct: 4 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 63
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E L E FSE+G +TS + + G S+GF G K LY+
Sbjct: 64 DEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 123
Query: 154 ARAQKKAERKAILRAQFERMR 174
A AQ+K +R+A L+A F ++R
Sbjct: 124 ALAQRKEDRRAHLQALFSQIR 144
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 37/161 (22%)
Query: 51 EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----------- 99
+GKS+ +GFV + + A A E L G + E +VG ++ +R E
Sbjct: 5 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKE 64
Query: 100 -GSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG--------- 147
F NLY+KNLDD + +E + E FS FG ITS + +D NG S+G G
Sbjct: 65 AADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 124
Query: 148 --------------SKVLYVARAQKKAERKAILRAQFERMR 174
SK LYVA AQ+K +R+A L+AQF +MR
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMR 165
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 86/203 (42%), Gaps = 68/203 (33%)
Query: 143 SKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQ 195
K F K +V +AQKK ER+ L+ +FE+ KE A+ LY KN++D + + ++K+
Sbjct: 31 GKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKE 90
Query: 196 YFSQCGTISSVKIMRTDRGISKGHC----------------------------MAIAQTK 227
FS GTI+S K+MR GIS+G +A+AQ K
Sbjct: 91 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRK 150
Query: 228 RERTSYLRI------------------MYAKQGPGLASTIF---------PVHPTL-YQR 259
+R + L+ MY GPGL IF P P YQ+
Sbjct: 151 EDRRARLQAQFSQMRPVAMAPSVGRMPMYPPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQ 210
Query: 260 ALQVYQAPDFRHGGM-IPNGFSP 281
L P R GG +PN F P
Sbjct: 211 QL----VPGMRPGGAPMPNFFVP 229
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL +I + K+ ++FS FG I S KV+ G S+G GFV +STPE A A+ ++
Sbjct: 73 NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 132
Query: 76 QGATVERMELYVGPFIRRADR 96
G V LYV R+ DR
Sbjct: 133 NGKMVASKPLYVALAQRKEDR 153
>gi|388502742|gb|AFK39437.1| unknown [Lotus japonicus]
Length = 139
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 85 LYVGPFIRRADRIQEG--SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGT 142
+YVG F+++++RI G + + NLY+K+LD D+TE +L EKFS FGKI SL ISKD NG
Sbjct: 37 IYVGRFVKKSERILPGPDARYTNLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGM 96
Query: 143 SKGFG 147
SKGFG
Sbjct: 97 SKGFG 101
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYST 64
P +AR + N ++K+L I L + FS FG I S + + G SKG+GFV Y
Sbjct: 51 PGPDARYT---NLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGMSKGFGFVNYEN 107
Query: 65 PESALDAIEKLQGATV 80
+ A A+E + G +
Sbjct: 108 SDDAKRALEAMDGTQL 123
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R SG+ N VK L ++D L ++F K+G + + + + G+S+GY + + ESA+
Sbjct: 90 RRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLACDERGESRGYARISFEREESAV 149
Query: 70 DAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
DA++++ G ++ + V + + R + F NLYVKNL+ +T+ L F+++G+
Sbjct: 150 DAVKEMDGMEMDGQAIVVERY-QAQHRDEMLKQFTNLYVKNLEPTVTDSKLRAFFAKYGE 208
Query: 130 ITSLVISKDANGTSK-GFGSKVLYVARAQKKAERKAI 165
++S + + S+ GFG YVA + + KA+
Sbjct: 209 VSSAKVRDLGDAQSEVGFG----YVAFEKHEDAAKAV 241
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESAL 69
L N +VKNL T+ + KL F+K+G++ S+KV + +S+ G+G+V + E A
Sbjct: 179 LKQFTNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAA 238
Query: 70 DAIEKLQGATVERME----LYVGPFIRRADRIQEG-----------SSFNNLYVKNLDDD 114
A+E+L G E + L V F R +R ++ S + NLYVK DD
Sbjct: 239 KAVEELNGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 115 MTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
+T E L E F +G+ S+ + D + G S+ FG
Sbjct: 299 VTSERLEELFQRYGETVSVTVMTDKDTGMSRCFG 332
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ KL+ F + G + S +V V S KS GYG+V + P A A+++
Sbjct: 11 WVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ-A 69
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
GA + L + R D + S NN+ VK L + L E F ++G++T++ ++
Sbjct: 70 GAKLGTRFLRIAKIQR--DPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLA 127
Query: 137 KDANGTSKGFG--------SKVLYVARAQ-KKAERKAILRAQF-----ERMRKERAELY- 181
D G S+G+ S V V + + +AI+ ++ + M K+ LY
Sbjct: 128 CDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERYQAQHRDEMLKQFTNLYV 187
Query: 182 KNINDEVDEIELKQYFSQCGTISSVKI 208
KN+ V + +L+ +F++ G +SS K+
Sbjct: 188 KNLEPTVTDSKLRAFFAKYGEVSSAKV 214
>gi|403370981|gb|EJY85363.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 85/281 (30%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
F+K + + ++ F FG+I S+KV +S S+GYGFVQ++ E A + I+ G
Sbjct: 242 FIKGFSKQWTHKDFYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICDG 301
Query: 78 ATV---------------------ERME-----------------------------LYV 87
+ E++E L +
Sbjct: 302 KVILPLDSQKPHQAQLVDPSSVNLEQLEKPDDEISAFDDSKDQPSSKQNKSKKAMQPLKI 361
Query: 88 GPFIRRADRIQEGSS----------FNNLYVKNLDD-DMTEEILVEKFSEFGKITSLVIS 136
P+++ G S FNNL+VK D ++T E L E FS +G I S V+
Sbjct: 362 LPYVKAEKGANTGGSLGLGVTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMM 421
Query: 137 K--DANGTSKGFG-------------------SKVLYVARAQKKAERKAILRAQFERMRK 175
K D + G+G LYV RA KK +R ++ E+ +K
Sbjct: 422 KKQDNPDENSGYGFVCFEDSEGARRACENMHTKDGLYVKRALKKQQRLEEVKRLSEKYKK 481
Query: 176 --ERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR 213
++ LY KN E E ELK+YF + G +++VKIMR +
Sbjct: 482 SMQKFNLYVKNFPLETTEAELKEYFQRFGDVNNVKIMRKSK 522
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 14 IGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEG--KSKGYGFVQYSTPESALD 70
N FVK I + +L+++FS +G+I S+ ++ Q+ ++ GYGFV + E A
Sbjct: 387 FNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFEDSEGARR 446
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFN----------NLYVKNLDDDMTEEIL 120
A E + + LYV +++ R++E + NLYVKN + TE L
Sbjct: 447 ACENMH----TKDGLYVKRALKKQQRLEEVKRLSEKYKKSMQKFNLYVKNFPLETTEAEL 502
Query: 121 VEKFSEFGKITSLVI 135
E F FG + ++ I
Sbjct: 503 KEYFQRFGDVNNVKI 517
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I S+VV G S+GYGFV+YS P A +AI++
Sbjct: 294 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 353
Query: 75 LQGATVE--RMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G VE +++ V F D Q+ S LYV NL M + L+ F FG+
Sbjct: 354 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 413
Query: 130 ITSLVISKD-ANGTSKGFG 147
+T+ ++KD G SKG+G
Sbjct: 414 VTNAKVAKDHTTGLSKGYG 432
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS+P A +A+ L
Sbjct: 391 YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLN 450
Query: 77 GATVE--RMELYV-------------GPFIRRADRIQEGSS--------FNNLYVKNLDD 113
G V+ ++E+ V P R ++ S+ +NLYV N+
Sbjct: 451 GRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPS 510
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG 147
+ + LVE F FGKIT + D + ++KG+G
Sbjct: 511 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 545
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAI 72
+ N +V N+ S+ID KL ++F FG I ++VV + +KGYGF++++ ESA AI
Sbjct: 500 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 559
Query: 73 EKLQGATV--ERMELYVGPFIRRA--DRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSE 126
+ GA V E + + V A +Q N LY+ NL MT + +V F+
Sbjct: 560 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 619
Query: 127 FGKITSLVIS 136
FG+IT ++++
Sbjct: 620 FGQITKVLMN 629
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S++ + +F FG +VV ++ + + YG V++ P A AI+
Sbjct: 685 MANLYVGRVPSSLTEDQFIDLFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAID 739
Query: 74 KLQGATVERMELYV-------------GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
L G + L V G + ++G NLYV +L + E
Sbjct: 740 HLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNER 799
Query: 120 LVEKFSEFGKIT-SLVISKDANGTSKGFG 147
L++ F G+IT + V+ + G SKGFG
Sbjct: 800 LIDLFLPCGQITQAKVVVERYTGVSKGFG 828
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V +L S ++N +L +F G I +KVVV + G SKG+GFV+++ SA A+
Sbjct: 785 NLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTH 844
Query: 75 LQG 77
+ G
Sbjct: 845 MNG 847
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 50/239 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ NL ++ K+ +F+ FG I +KV+++ E Y V Y+ SA A++ + G
Sbjct: 600 YITNLPRSMTADKMVNLFAPFGQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDG 652
Query: 78 ATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEKFSE 126
VE L V +R++ +S NLYV + +TE+ ++ F
Sbjct: 653 YMVEGKRLVV----KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 708
Query: 127 FGKIT------------------SLVISKDANGTSKGFGSKVLYVARAQKKAER---KAI 165
FG++ S + + G +L V A AE K
Sbjct: 709 FGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGA 768
Query: 166 LRAQF---ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDR--GISKG 218
L +Q E+ + + LY ++ V+ L F CG I+ K++ +R G+SKG
Sbjct: 769 LTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV-VERYTGVSKG 826
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 112/269 (41%), Gaps = 54/269 (20%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++K++ + K+ + F FG+I S + + K + + FV ++ E A A+E +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITS--FAMQTDPKGRRFAFVNFAEFEQARAAVEDM 63
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNL--------DDDMTEEILVEKFSEF 127
G V E + AD+ Q V DDD+ E
Sbjct: 64 DGEDVRNEEE------KAADKAQREREREERRVAREAVGDEVESDDDVEPE--------- 108
Query: 128 GKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERA------ELY 181
S LYVARAQ KAER A+L+ QF + + LY
Sbjct: 109 --------------------SYRLYVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLY 148
Query: 182 -KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
KN+ + VD+ ELK+ F GTI+SVK+M D+G+S+G T E T + M+ K
Sbjct: 149 VKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLK 208
Query: 241 --QGPGLASTIFPVHPTLYQRALQVYQAP 267
G L + +R Q Y+AP
Sbjct: 209 LIGGKPLYVGMHEKREQRLERLQQRYRAP 237
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
R G+ N +VKNL T+D+ +L ++F FG I S KV+ +G S+G+GFV +ST E A
Sbjct: 140 GRFGGV-NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEA 198
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQ 98
A+ + + LYVG +R R++
Sbjct: 199 TKAVTDMHLKLIGGKPLYVGMHEKREQRLE 228
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161
+F N+Y+K++ TEE + E+F FG+ITS + D G + +V A+ +
Sbjct: 3 NFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPK------GRRFAFVNFAEFEQA 56
Query: 162 RKAILRAQFERMRKE 176
R A+ E +R E
Sbjct: 57 RAAVEDMDGEDVRNE 71
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVK+L + + L ++FS +G++ SSKV++ +G S GYGFV++S P + AI++L
Sbjct: 95 NIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQAAIKEL 154
Query: 76 QGATVERMELYVGPFIRRAD---RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
G + +L R ++ + + NNL++K L D+T+E L + F +GKI
Sbjct: 155 DGFQFQNKKL----LCRLSNLYTNLNSKNPSNNLFIKPLPADVTDEQLRKLFEPYGKIVE 210
Query: 133 LVISKDANGTSKGFG 147
+ D NG SK G
Sbjct: 211 CKVMLDQNGQSKFAG 225
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N FV +L ID+ L Q+FS++G +QS +V+ ++ G++KGYGFV++ E A ++
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 75 LQG 77
+ G
Sbjct: 572 MNG 574
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I S+VV G S+GYGFV+YS P A +AI++
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 75 LQGATVE--RMELYVGPFIRRADRIQEGS---SFNNLYVKNLDDDMTEEILVEKFSEFGK 129
+ G VE +++ V F D Q+ S LYV NL M + L+ F FG+
Sbjct: 270 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 130 ITSLVISKD-ANGTSKGFG 147
+T+ ++KD G SKG+G
Sbjct: 330 VTNAKVAKDHTTGLSKGYG 348
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 28/168 (16%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYS 63
P+ E ++ + +V NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS
Sbjct: 297 PSKETDMAKL---YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYS 353
Query: 64 TPESALDAIEKLQGATVE--RMELYV-------------GPFIRRADRIQEGSS------ 102
+P A +A+ L G V+ ++E+ V P R ++ S+
Sbjct: 354 SPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKE 413
Query: 103 --FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANG-TSKGFG 147
+NLYV N+ + + LVE F FGKIT + D + ++KG+G
Sbjct: 414 IDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 461
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEG-KSKGYGFVQYSTPESALDAI 72
+ N +V N+ S+ID KL ++F FG I ++VV + +KGYGF++++ ESA AI
Sbjct: 416 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 475
Query: 73 EKLQGATV--ERMELYVGPFIRRA--DRIQEGSSFNN--LYVKNLDDDMTEEILVEKFSE 126
+ GA V E + + V A +Q N LY+ NL MT + +V F+
Sbjct: 476 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 535
Query: 127 FGKITSLVIS 136
FG+IT ++++
Sbjct: 536 FGQITKVLMN 545
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73
+ N +V + S++ + +F FG +VV ++ + + YG V++ P A AI+
Sbjct: 601 MANLYVGRVPSSLTEDQFIDLFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAID 655
Query: 74 KLQGATVERMELYV-------------GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
L G + L V G + ++G NLYV +L + E
Sbjct: 656 HLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNER 715
Query: 120 LVEKFSEFGKIT-SLVISKDANGTSKGFG 147
L++ F G+IT + V+ + G SKGFG
Sbjct: 716 LIDLFLPCGQITQAKVVVERYTGVSKGFG 744
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V +L S ++N +L +F G I +KVVV + G SKG+GFV+++ SA A+
Sbjct: 701 NLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTH 760
Query: 75 LQG 77
+ G
Sbjct: 761 MNG 763
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ NL ++ K+ +F+ FG I +KV+++ E Y V Y+ SA A++ + G
Sbjct: 516 YITNLPRSMTADKMVNLFAPFGQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDG 568
Query: 78 ATVERMELYVGPFIRRADRIQEGSS-----------FNNLYVKNLDDDMTEEILVEKFSE 126
VE L V +R++ +S NLYV + +TE+ ++ F
Sbjct: 569 YMVEGKRLVV----KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 624
Query: 127 FGKI 130
FG++
Sbjct: 625 FGRV 628
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 77.8 bits (190), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 40 DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE 99
+I S KVV + G SKGYGFV + T E+A AIEK+ G + +++VG F R +R E
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 100 ----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVAR 155
F N+Y+KN +DM +E L E F S+ + D +G SKGFG +V+
Sbjct: 60 LGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFG----FVSF 115
Query: 156 AQKKAERKAI 165
+ + +KA+
Sbjct: 116 ERHEDAQKAV 125
Score = 45.8 bits (107), Expect = 0.035, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N ++KN +D+ +L ++F S KV+ + GKSKG+GFV + E A
Sbjct: 62 ARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDA 121
Query: 69 LDAI 72
A+
Sbjct: 122 QKAV 125
>gi|403331840|gb|EJY64890.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 701
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKF---GDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
++ N F+KNL +I + +L + FSK + S+KV ++ + S+GYGFV S+PE
Sbjct: 97 MNKANNLFIKNLDKSITSQQLDESFSKVLGSDVVVSAKVSINADYTSRGYGFVCLSSPEL 156
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
A A+ AT + + V PF + DR + +FNN+Y+KN +E + + F ++
Sbjct: 157 AEQAL-----ATSDSFKFDVHPFNPK-DRRELRKTFNNIYIKNFPSIWNQEKIEQIFGQY 210
Query: 128 GKITSLVISK-DANGT---------------SKGFGSKV-----------------LYVA 154
G I S I GT +K +G + LYV
Sbjct: 211 GTIKSTFIKMGKVQGTDQEAPFAFVCYEDPDNKEYGPRCALNAVTQENEKEYDGIKLYVK 270
Query: 155 RAQKKAERKAILRAQFERMR--KERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
A K ER+ + + R + K+R LY KN + E +LK YF + G I S+K+
Sbjct: 271 EALPKKEREQEKKREQNRFKNSKKRCNLYVKNFPENTTEEQLKAYFEKYGEIESIKL 327
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 26/145 (17%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG------YGFVQYSTPES- 67
N ++KN S + K+ QIF ++G I+S+ + + GK +G + FV Y P++
Sbjct: 187 NNIYIKNFPSIWNQEKIEQIFGQYGTIKSTFIKM---GKVQGTDQEAPFAFVCYEDPDNK 243
Query: 68 ------ALDAIEKLQGATVERMELYVGPFIRRADRIQE----------GSSFNNLYVKNL 111
AL+A+ + + ++LYV + + +R QE NLYVKN
Sbjct: 244 EYGPRCALNAVTQENEKEYDGIKLYVKEALPKKEREQEKKREQNRFKNSKKRCNLYVKNF 303
Query: 112 DDDMTEEILVEKFSEFGKITSLVIS 136
++ TEE L F ++G+I S+ ++
Sbjct: 304 PENTTEEQLKAYFEKYGEIESIKLN 328
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL TIDN L +FS FG+I S KVV G SKGY +V
Sbjct: 34 MWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 92
Query: 61 QYSTPESALDAIEKLQGATVERMELYV 87
+ + +A AI + G + ++YV
Sbjct: 93 HFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 40.4 bits (93), Expect = 1.7, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVG-PF----IRRADRIQEGSSFNNLYVKN 110
GYG+V + P A A+ + +L G PF + DR+++ S N+++KN
Sbjct: 2 GYGYVNFRFPADAEWALNTMN------FDLINGKPFRLMWSQPDDRLRK-SGVGNIFIKN 54
Query: 111 LDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
LD + L FS FG I S + D NG SKG+
Sbjct: 55 LDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYA 90
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK--GYGFVQYSTPESA 68
L + N + N+ + L +F+ FG+I S KVV ++ G SK GYGFV+Y+TPE A
Sbjct: 149 LDALTNLIINNIPKHFSSEDLRDMFANFGEIVSYKVV-TKRGNSKNMGYGFVKYATPEGA 207
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFG 128
AIE++ G +++ L V A S+ NLYV L+ +T+E L E FS+FG
Sbjct: 208 TAAIEQMNGHSIDLKFLKV----SYATATSSQSTHANLYVNRLEPQVTKEDLAEAFSKFG 263
Query: 129 KITSLVISKDAN-GTSKGFG 147
++ I D N G+S+ G
Sbjct: 264 EVVETKILVDPNTGSSRCVG 283
>gi|403355351|gb|EJY77251.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 712
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 48/222 (21%)
Query: 20 KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79
K L T ++L ++ F +FG++ S+KV + +SKGYG+VQ+S +AL A+E + G T
Sbjct: 82 KPLNWTHEDLTMN--FKQFGEVVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEMMNGKT 139
Query: 80 -----VERMELYVGPFIR-RADRIQEGSSFNNLYVKNLDD-DMTEEILVEKFSEFGKITS 132
V ++LY ++ ++ ++Q NNLYVKN D T++ L +G + +
Sbjct: 140 FGNEIVLSVKLYNSSLVKEKSKKVQ-----NNLYVKNFPTLDFTDQEL-----HYGPLIN 189
Query: 133 LVISKDANGTSKGFG-------------------SKVLYVARAQKKAERKAILRAQFERM 173
I KD+ G +KGFG + +YV AQ K ER + L Q + +
Sbjct: 190 AQIMKDSQGNTKGFGFVCFQSAEDAQKALQDISSTTQIYVTEAQSKEERMSEL--QRKNL 247
Query: 174 RKERAELYKNI-------NDEVDEIELKQYFSQCGTISSVKI 208
+++ +Y+N+ N D++ LK +F G + + KI
Sbjct: 248 SFKKSTMYQNLYVKGFDKNIITDDL-LKIHFEAYGEVKNAKI 288
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 106 LYVKNLDD-DMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
L+VK + T E L F +FG++ S +S DAN SKG+G YV +QK KA
Sbjct: 76 LFVKGFKPLNWTHEDLTMNFKQFGEVVSAKVSIDANHQSKGYG----YVQFSQKSNALKA 131
Query: 165 I 165
+
Sbjct: 132 M 132
>gi|357612546|gb|EHJ68054.1| hypothetical protein KGM_06271 [Danaus plexippus]
Length = 441
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L+ T + L Q+ +G+I S+K ++ + K KGYGFV + T SA A++
Sbjct: 112 NLYIRGLSQTTTDKDLVQMCQMYGNIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKG 171
Query: 75 LQGATVERMELYVG-PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
LQ V+ VG F+RR +R QE NLY+ NL E + + ++FG++ S
Sbjct: 172 LQAKGVQAQMAKVGIWFLRRLNRQQEQDP-TNLYMANLPPHFKENDVDQLLAKFGQVVST 230
Query: 134 VISKDANGTSKGFG 147
I +D +G SKG G
Sbjct: 231 RILRDTHGHSKGVG 244
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI--TSLVISKDANGTSKGFG---SKVLYV 153
E S NLY++ L T++ LV+ +G I T ++ K+ N KG+G + +
Sbjct: 106 EQLSRTNLYIRGLSQTTTDKDLVQMCQMYGNIISTKAILDKNTN-KCKGYGFVDFETIAS 164
Query: 154 ARAQKKAERKAILRAQFERM------------RKERAELY-KNINDEVDEIELKQYFSQC 200
A A K + ++AQ ++ ++ LY N+ E ++ Q ++
Sbjct: 165 AEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAKF 224
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPG 244
G + S +I+R G SKG A +++ + +++ PG
Sbjct: 225 GQVVSTRILRDTHGHSKGVGFARMESREKCEQIIQMFNGNPIPG 268
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+K+L +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYV 87
+ + +A AI + G + ++YV
Sbjct: 151 HFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK-GYGFVQYSTPESALDAIEKLQG 77
V +L + L++ F G ++ +++ S GYG+V + P A A+ +
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + DR+++ S N+++K+LD + L FS FG I S +
Sbjct: 82 DLINGKPFRL-MWSQPDDRLRK-SGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVC 139
Query: 138 DANGTSKGFGSKVLYVARAQKKAERKAIL 166
D NG SKG+ YV A +AI
Sbjct: 140 DDNG-SKGYA----YVHFDSLAAANRAIW 163
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 30/148 (20%)
Query: 101 SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG------------- 147
+ F NL+V+ L + TEE L +F FG +TSL++ D + +KGFG
Sbjct: 187 THFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVTA 246
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDE 190
+ V+RAQ K ER+A L+ +E R ER LY N+N ++
Sbjct: 247 VAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIERLRNARGTNLYITNLNPAINN 306
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKG 218
L+ YFS+ G I+SV+IM G SKG
Sbjct: 307 ERLRAYFSKFGEITSVRIMLDAVGNSKG 334
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FV+ L+ L F +FG + S + + + ++KG+GFV + A+ A+ L
Sbjct: 191 NLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVTAVAAL 250
Query: 76 QGAT--------------VERM-ELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
GA VER EL R +R++ NLY+ NL+ + E L
Sbjct: 251 DGAELCGARISVSRAQSKVERQAELKRAYEANRIERLRNARG-TNLYITNLNPAINNERL 309
Query: 121 VEKFSEFGKITSLVISKDANGTSKGFG 147
FS+FG+ITS+ I DA G SKGFG
Sbjct: 310 RAYFSKFGEITSVRIMLDAVGNSKGFG 336
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ NL I+N +L FSKFG+I S ++++ G SKG+GFV + P+ A +AI ++
Sbjct: 294 NLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAEM 353
Query: 76 QGATVERMELYVG 88
+E L V
Sbjct: 354 HNRPIEGNVLQVA 366
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 41/249 (16%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
+ + +++ + S N FV N+ + + L +IF FG + S K+ + EGKSKGYG+V
Sbjct: 90 LLTISDTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISRTSEGKSKGYGYV 149
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI-RRADRIQEGSSFNNLYVKNLDDDMTEEI 119
Y +SA A+ Q + L+V + +++ R E +F N + KN + TE
Sbjct: 150 MYKNLKSAKKAVTNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAE 209
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFGS------------------------------- 148
L ++G+IT++ ++G GF
Sbjct: 210 LKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDT 269
Query: 149 ----KVLYVARAQKKAERKAILRAQFE-----RMRKERAELYKNINDEVDEIELKQYFSQ 199
+ Y+ + +KK ER+ IL++ + R + +R +N+ E EL + +
Sbjct: 270 KFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKK 329
Query: 200 CGTISSVKI 208
G I+ K+
Sbjct: 330 FGNITDFKL 338
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 26/169 (15%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
S NSE + N F KN +L + K+G+I + +GK G+ V Y
Sbjct: 184 SARNSENK--AFTNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNY 241
Query: 63 STPESALDAIEKLQGATV-------ERMELYVGPFI-----RRADRIQEGSSF------- 103
+ PESA+ AI++L + + + + PF ++ +R Q SF
Sbjct: 242 AHPESAVRAIDELHNKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGF 301
Query: 104 -----NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NL+++N+ +E+ L+E +FG IT + D K FG
Sbjct: 302 RNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFG 350
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
+ FV++ + +A +A++K + E+ + +D + S N++V N+ DM
Sbjct: 60 AFAFVKFDSANAAQEAVQKYNYTMLNGKEI----LLTISDTQFKYSQSANIFVNNIPTDM 115
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ 169
+ + L E F FG + S IS+ + G SKG+G YV K+ +KA+ Q
Sbjct: 116 SAKDLEEIFKNFGPVLSCKISRTSEGKSKGYG----YVMYKNLKSAKKAVTNCQ 165
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F++N+ ++ +L +I KFG+I K+ + K +G+V YST E A A+EK
Sbjct: 308 NLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKS 367
Query: 76 QGATVERMELYVGPFIRRADRIQEGS 101
+ ++ +L + + + +R E S
Sbjct: 368 KQVLLDGNQLELSIYKSKYERSTESS 393
>gi|402697285|gb|AFQ90830.1| polyA-binding protein cytoplasmic 1, partial [Deirochelys
reticularia]
Length = 106
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 54 SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVK 109
SKGYGFV + T E+ AIEK+ G + +++VG F R +R E F N+Y+K
Sbjct: 2 SKGYGFVHFETQEAXERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 61
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
N +DM +E L E F FG S+ + D +G SKGFG
Sbjct: 62 NFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFG 99
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQY 62
AR N ++KN +D+ +L ++F FG S KV+ + GKSKG+GFV +
Sbjct: 50 ARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFGFVSF 103
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
++V R + + ER+A L A+ KE +Y KN +++D+ LK+ F G SVK+M
Sbjct: 33 VFVGRFKSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVM 88
Query: 210 RTDRGISKG 218
+ G SKG
Sbjct: 89 TDESGKSKG 97
>gi|339246059|ref|XP_003374663.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972148|gb|EFV55839.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 427
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 11/153 (7%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L ++ + +F G+++++K+V + G+S GYGF+ Y PESA AIE+
Sbjct: 20 NLIVNYLPQSMTTEEFRMLFDSIGEVETAKLVRDKVTGQSLGYGFINYVNPESAAKAIER 79
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSL 133
L G ++ ++ V + R + +G+ NLY+ L D T + L E FS FG+ ITS
Sbjct: 80 LNGLGLQSKKMKVS-YARPSSESIKGA---NLYISGLPDAYTVKELEELFSPFGRIITSR 135
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166
++ +A G SKG G R KK E A +
Sbjct: 136 ILVDNATGISKGVG-----FVRYDKKGEADAAI 163
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAI 72
FV NLA ++ KL Q+F FG + + KV+ Q K KGYGFV + + AL AI
Sbjct: 270 FVYNLAPEVEESKLWQLFGPFGAVLNVKVIRDMQTNKCKGYGFVTMTNYDEALAAI 325
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
++ P+SE+ + G N ++ L +L ++FS FG I +S+++V G SKG GFV
Sbjct: 94 YARPSSES-IKG-ANLYISGLPDAYTVKELEELFSPFGRIITSRILVDNATGISKGVGFV 151
Query: 61 QYSTPESALDAIEKLQ 76
+Y A AI KL
Sbjct: 152 RYDKKGEADAAIAKLN 167
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V NL +++ + KL ++F FG I SKV G SKGYGFV+Y P SA AI +
Sbjct: 205 NLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINR 264
Query: 75 LQGATVERMELYV----------GPFIRRADRI----QEGSSFNNLYVKNLDDDMTEEIL 120
+ G V+ L V P I+ E ++LYV+NL MT+E L
Sbjct: 265 MNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEEL 324
Query: 121 VEKFSEFGKITSLVISKD-ANGTSKGFG 147
++ F FGKI + +D A G +KG+G
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYG 352
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 18/177 (10%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFV 60
+S P+ E +S + +V+NL+ ++ +L Q F FG I +KV G +KGYGFV
Sbjct: 298 YSQPSEEIDMSSL---YVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFV 354
Query: 61 QYSTPESALDAIEKLQGATVE--RMELY---VGPFIRRA-------DRIQEGSSFNNLYV 108
+YS A +AI L G VE +ME+ V P + + R+ + NLYV
Sbjct: 355 RYSNSHEAANAIIHLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYV 414
Query: 109 KNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
N+ + + L+E F FGKIT ++ GT G G + +V A + +AI
Sbjct: 415 CNIPTSIDTKKLIEIFLPFGKITHARVAAH-QGTYSGKG-RYGFVKFADSQCAAEAI 469
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 22/157 (14%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
E + + N FV + ST++ +L ++F FG I +V Q GYG +++ P S
Sbjct: 598 EVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQHQ-----GYGMFRFNDPFS 652
Query: 68 ALDAIEKLQGATVERMELYV--------GPFIRRADRIQ------EGSSFN--NLYVKNL 111
A AI+ + G + L V G F D ++ EG + NLYV +L
Sbjct: 653 AAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCHL 712
Query: 112 DDDMTEEILVEKFSEFGKIT-SLVISKDANGTSKGFG 147
+T E L+E F G+IT + V++ G SKGFG
Sbjct: 713 PLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFG 749
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 6 NSEARLS---GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ---EGKSKGYGF 59
+++ARL + N +V N+ ++ID KL +IF FG I ++V Q GK + YGF
Sbjct: 398 HTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGR-YGF 456
Query: 60 VQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS--------------FNN 105
V+++ + A +AI + GA VE L V R A SS +
Sbjct: 457 VKFADSQCAAEAITLMDGALVEGETLVV----RVAGLSSSASSPAVHGLPIPSPEINKSR 512
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+Y+ NL +++V+ F FG+I+ +V++
Sbjct: 513 IYITNLPRSTNADMMVKLFVPFGQISKVVMN 543
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
P +E R + N +V +L I KL +IF G I ++VV + G SKG+GFV+++
Sbjct: 695 PGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFA 754
Query: 64 TPESALDAIEKLQGATVE 81
SA A+ + G +E
Sbjct: 755 DTYSAAVALTHMNGYPLE 772
>gi|308482014|ref|XP_003103211.1| CRE-TAG-310 protein [Caenorhabditis remanei]
gi|308260316|gb|EFP04269.1| CRE-TAG-310 protein [Caenorhabditis remanei]
Length = 528
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ LA ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 212 NLYIRGLAPNTNDDTLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 271
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + +++G + S
Sbjct: 272 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLESELNKYGMVISTR 322
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +FE M KE L
Sbjct: 323 ILRTPDNNSRGVG-----FARMDSKEKCEVIISALNGGRFENMTKEGPAL 367
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 37/141 (26%)
Query: 71 AIEKLQGATVERMELYVGPFIRRADR-----------IQEGSS---FNNLYVKNLDDDMT 116
A+++L G + E YVG +++ R +QE + NLY+KNLDD +
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD 61
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYV 153
++ L E F+E+G ITS + +D+NG S+G GSK LYV
Sbjct: 62 DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 121
Query: 154 ARAQKKAERKAILRAQFERMR 174
A AQ+K +RKA L+AQF ++R
Sbjct: 122 ALAQRKEDRKARLQAQFSQLR 142
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K F K YV RAQKK+ R+ L+ +FE+ +E A+ Y KN++D VD+ +L++
Sbjct: 9 KKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLREL 68
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
F++ GTI+S K+MR G+S+G ++ + + L M +K
Sbjct: 69 FAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSK 112
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL ++D+ KL ++F+++G I S KV+ G S+G GFV + + E A A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 76 QGATVERMELYVGPFIRRADR 96
V LYV R+ DR
Sbjct: 110 NSKMVGSKPLYVALAQRKEDR 130
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALD 70
+SG GN FV+ + +I+ +LH++FS FG++ S K+ V GK +GY +VQ++ P
Sbjct: 97 VSGEGNLFVRGIDESIEAPQLHELFSHFGEVISCKIPVLN-GKPRGYAYVQFANPADGDR 155
Query: 71 AIEKLQGATVERMELYVGPFIRRADR---------IQEGSSFNNLYVKNLDDDMTEEI-L 120
A+++L +T+ + + FI R R I +F N+++KNL + + + L
Sbjct: 156 AMKELADSTINGKAITIEKFINRGMRQPNKATEQNIATDPTFTNIFIKNLPESINTLLDL 215
Query: 121 VEKFSEFGKITSL-VISKDANGTSK------------GFGSKVLY-----VARAQKKAER 162
+ F E+G++ S ++ + +G +K G +V+Y R+ +ER
Sbjct: 216 LRLFQEYGQVVSARIVPEKRSGFAKMIDHESAVRAVLGLNGRVIYGHTISCCRSLSLSER 275
Query: 163 KAIL 166
A +
Sbjct: 276 AAFM 279
>gi|403352466|gb|EJY75748.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 678
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 45/240 (18%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSK-FGD--IQSSKVVVSQEGKSKGYGFVQYST 64
E ++ N F+KNL +I + +L +IF+K FG+ + S+KV V+ + S+GYGFV +
Sbjct: 94 ENKMGKRNNLFIKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSRGYGFVCLAC 153
Query: 65 PESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124
P+ A A+ A + V P+ DR + SFN +Y+KN + +E + + F
Sbjct: 154 PQLAEQAL-----AKASEFKFEVHPY-HPEDRRELRKSFNYIYIKNFPINWNKEKIEQIF 207
Query: 125 SEFGKITSLVISKD-ANGT---------------SKGFGSKVLYVARAQKKAER------ 162
++G I S VI GT +K +G K A Q+ +
Sbjct: 208 GKYGTIKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITQENDKEYDGVKL 267
Query: 163 -------KAILRAQFERMR------KERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K+I + ER + K+R LY KN D+ E +LK YF + G I S+K+
Sbjct: 268 KVKDGLPKSIREQEKEREQNRFINSKKRCNLYVKNFPDDTTEEQLKAYFEKYGQIESIKL 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 20/139 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPES------- 67
++KN + K+ QIF K+G I+S+ + +V + + FV Y PE+
Sbjct: 190 YIKNFPINWNKEKIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKC 249
Query: 68 ALDAIEKLQGATVERMELYVGP----FIRRADRIQEGSSF------NNLYVKNLDDDMTE 117
A +AI + + ++L V IR ++ +E + F NLYVKN DD TE
Sbjct: 250 AQNAITQENDKEYDGVKLKVKDGLPKSIREQEKEREQNRFINSKKRCNLYVKNFPDDTTE 309
Query: 118 EILVEKFSEFGKITSLVIS 136
E L F ++G+I S+ ++
Sbjct: 310 EQLKAYFEKYGQIESIKLN 328
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 18/129 (13%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSE-FGK--ITSLVISKDANGTSKGFGSKVLYVARAQKKA 160
NNL++KNLD +T + L E F++ FG+ + S +S +A+ +S+G+G L + ++A
Sbjct: 101 NNLFIKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSRGYGFVCLACPQLAEQA 160
Query: 161 ERKAILRAQFE----------RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
KA +FE +RK +Y KN ++ +++Q F + GTI S IM
Sbjct: 161 LAKAS-EFKFEVHPYHPEDRRELRKSFNYIYIKNFPINWNKEKIEQIFGKYGTIKSTVIM 219
Query: 210 RTDRGISKG 218
GI +G
Sbjct: 220 ---MGIVQG 225
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN +L F K+G I+S K+ +EG + Y FV Y +PESA+ A ++
Sbjct: 297 NLYVKNFPDDTTEEQLKAYFEKYGQIESIKLNY-KEGAA-VYAFVCYKSPESAIYAKQQS 354
Query: 76 QGATVERMELYVGPFIRRADR-IQEGSSFNNLYVKNL 111
Q T+ +L++ + ++ R IQ+ + + +NL
Sbjct: 355 QTQTLNGKQLFLNYYEQKEVRKIQQEDARDRTDFQNL 391
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 165/435 (37%), Gaps = 92/435 (21%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIE 73
GN FVKNL + N +L FS +G+I S KV +E GKS YG+V +S P +
Sbjct: 77 GNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLA 136
Query: 74 KLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
+ VE +YV + +R S + YV N +TE+ L + F ++G I S+
Sbjct: 137 DMNKDVVEEGAMYVMEYEKRMK--DTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSV 194
Query: 134 VIS----------------------------KDANGTSKGFGSKVLYVARAQKKAERKAI 165
I KD T +G VLYV R Q + ER +I
Sbjct: 195 YIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERASI 254
Query: 166 LRAQFERMRKERAE------LYKNINDEVDEIE-LKQYFSQCGTISSVKIMRTD------ 212
+ E +KE E LY D+ +E L++ F G I S I R
Sbjct: 255 NQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSIARDKNTKELK 314
Query: 213 -----------------RGISKGHCM----AIAQTKRERTSYLRIMYAKQGPGLASTIFP 251
R + H + +AQT+ ER L+ KQ G+ +P
Sbjct: 315 PFGFVCMDTTENAQNAIRAFRESHDLKLKVELAQTREERAKMLK-ERRKQTQGVVMQ-YP 372
Query: 252 VHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPM 311
V +Q G +P+ + +M + Q G MM+ N M
Sbjct: 373 V--------VQYTMPIGMNMGNRMPSNKQQQQQQQIPMMP--MMYQTMGNMMSFPRNTQM 422
Query: 312 PLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAAS-----NENLSSMLVATSPDER 366
P M + Y + AN N + AS + M+ A + +ER
Sbjct: 423 PGMPVQMMNQGY----------MSMANTQFNEKYNKLASLMQSMDPIKREMIDAMTNEER 472
Query: 367 KDILGQRLYPLVKKL 381
++ G+R++ L+K +
Sbjct: 473 RNTFGERIFYLIKTI 487
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 31 LHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89
L + F K+G ++++ VV+ + K S+ YG+V +ST E A A+E ++ E+ V
Sbjct: 5 LEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRV-- 62
Query: 90 FIRRADRIQEGSS-FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
+R+ R ++ + NL+VKNL D MT + L++KFS +G I S ++ D G S +G
Sbjct: 63 -MRQQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYG 121
Query: 148 ----------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-----KNINDEVDEIE 192
KVL + E A+ ++E+ K+ + + N + E
Sbjct: 122 YVHFSDPNVTQKVL-ADMNKDVVEEGAMYVMEYEKRMKDTSSDWVTCYVANFPTTLTEDG 180
Query: 193 LKQYFSQCGTISSVKI 208
L+ F + GTI+SV I
Sbjct: 181 LRDLFGKYGTINSVYI 196
>gi|268575456|ref|XP_002642707.1| C. briggsae CBR-TAG-310 protein [Caenorhabditis briggsae]
Length = 402
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ LA ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 107 NLYIRGLAPNTNDDTLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 166
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + +++G + S
Sbjct: 167 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPIDFTEQMLETELNKYGMVISTR 217
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +FE M KE L
Sbjct: 218 ILRTPDNNSRGVG-----FARMDSKEKCEVIISALNGGRFENMSKEGPAL 262
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALD 70
+ GN FV NL+ +D L + F +FG I++ +V+ ++ G+SKGYG+V++ + + A
Sbjct: 250 AATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEFESADDAAK 309
Query: 71 AIEKLQGATVERMELYVG-------------PFIRRADRIQE-GSSFN----NLYVKNLD 112
A+E G T++ EL V P R DR ++ G + + L+V N+
Sbjct: 310 ALEARHGYTLDNRELRVDLGTPRAQRNDGQTPQQRSNDRQKQYGDTPSQPSATLFVGNIS 369
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFG 147
D T++++ E F E+G I ++ + D G KGFG
Sbjct: 370 FDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFG 405
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 96 RIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFG 147
+ ++ ++ NL+V NL ++ EE L +F EFG I ++ VI+ +G SKG+G
Sbjct: 245 KTEDPAATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYG 297
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV N++ + ++F ++G I + ++ +E G KG+G+V++S+ E A A+E L
Sbjct: 364 FVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSIEEAKSAMENLT 423
Query: 77 GATV 80
G +
Sbjct: 424 GVDI 427
>gi|403355493|gb|EJY77324.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 590
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 45/233 (19%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSK-FGD--IQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
N V+NL +I + +L +IF+K FGD + S+KV ++ + S+GYGFV ++ P+ A A
Sbjct: 101 NNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVLFACPQLAEQA 160
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ K E + P + DR + +FNN+Y+ N + +E + + F ++G I
Sbjct: 161 LAKASEFNFE-----ISPH-QPKDRRELRKTFNNIYINNFPSNWNKEKIEQIFGQYGTIK 214
Query: 132 SLVISK-DANGT---------------SKGFGSKV-----------------LYVARAQK 158
S VI GT +K +G K LYV A
Sbjct: 215 STVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALP 274
Query: 159 KAERKAILRAQFERMR--KERAELY-KNINDEVDEIELKQYFSQCGTISSVKI 208
K R+ + + R + K+R LY KN + E +LK YF + G I S+K+
Sbjct: 275 KTLREQEKKREQNRFKNSKKRCNLYVKNFPENTTEEQLKAYFEKYGEIESIKL 327
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG------YGFVQYST--- 64
N ++ N S + K+ QIF ++G I+S+ V + GK +G + FV Y
Sbjct: 186 FNNIYINNFPSNWNKEKIEQIFGQYGTIKST---VIKMGKVQGTDQEAPFAFVCYEDKDN 242
Query: 65 ----PESALDAIEKLQGATVERMELYVGPFI----------RRADRIQEGSSFNNLYVKN 110
P+ AL+AI + + ++LYV + R +R + NLYVKN
Sbjct: 243 KEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKRCNLYVKN 302
Query: 111 LDDDMTEEILVEKFSEFGKITSLVIS 136
++ TEE L F ++G+I S+ ++
Sbjct: 303 FPENTTEEQLKAYFEKYGEIESIKLN 328
>gi|403339745|gb|EJY69134.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 593
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 47/235 (20%)
Query: 18 FVKNLASTIDNLKLHQIFSK-FGD--IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
VKNL +I + +L +IF+K FGD + S+KV ++ + S+GYGFVQ++ P+ A A+ K
Sbjct: 107 LVKNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVQFACPQLAEQALAK 166
Query: 75 LQGATVERMELYV-GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS- 132
A+ E+ P R R +FNN+Y+KN + +E + E F ++G I S
Sbjct: 167 ---ASEFNFEISTHQPMNREELR----KTFNNIYIKNFPSNWNKEKIEEIFGQYGTIKST 219
Query: 133 LVISKDANGT---------------SKGFGSKV-----------------LYVARAQKKA 160
+V+ GT +K +G K L V A K+
Sbjct: 220 VVMMGKVQGTDQEAPFAFVCYEDPDNKEYGPKCAQNAITQENDKEYDGFKLQVKEALPKS 279
Query: 161 ERKAILRAQFERMR--KERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
R+ + + R++ K+R LY KN + +E +LK YF + G I +K++ +
Sbjct: 280 LREQEKQREQNRLKNSKKRCNLYVKNFPENTNEEQLKAYFEKYGEIERIKLIHKE 334
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG------YGF 59
N E N ++KN S + K+ +IF ++G I+S+ V++ GK +G + F
Sbjct: 181 NREELRKTFNNIYIKNFPSNWNKEKIEEIFGQYGTIKSTVVMM---GKVQGTDQEAPFAF 237
Query: 60 VQYSTPES-------ALDAIEKLQGATVERMELYVGPFI----------RRADRIQEGSS 102
V Y P++ A +AI + + +L V + R +R++
Sbjct: 238 VCYEDPDNKEYGPKCAQNAITQENDKEYDGFKLQVKEALPKSLREQEKQREQNRLKNSKK 297
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
NLYVKN ++ EE L F ++G+I +
Sbjct: 298 RCNLYVKNFPENTNEEQLKAYFEKYGEIERI 328
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVK L + + +LH +F++FG + S+KV+V +G S GYGFV++S+P + AIE +
Sbjct: 89 NVFVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPKGNSYGYGFVRFSSPIESKLAIETM 148
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135
G + +L ++ + S NNL+VK L +T+ L + F FG+I +
Sbjct: 149 DGKQLMHKKLLCRLSYLYSNHNSKYPS-NNLFVKPLPATLTDGQLRDLFQGFGEIVECKV 207
Query: 136 SKDANGTSKGFG 147
D G SK G
Sbjct: 208 MVDKKGNSKLAG 219
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N FV +L S +D++ L+++FS++G +QS +V++ +E G++KGYGFV++ + A+ ++ +
Sbjct: 629 NLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLNQ 688
Query: 75 LQGATVERMELYV 87
+ G V + L V
Sbjct: 689 MNGMQVGQKYLKV 701
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N FVK L +T+ + +L +F FG+I KV+V ++G SK GFV++ A AI+ +
Sbjct: 177 NLFVKPLPATLTDGQLRDLFQGFGEIVECKVMVDKKGNSKLAGFVRFDNEADATKAIQAM 236
Query: 76 QGA 78
GA
Sbjct: 237 NGA 239
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 39/239 (16%)
Query: 9 ARLSGIGNA----FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
ARL G G+A +V NL + + L +IFS G + K++ + G S GYGFVQ+
Sbjct: 13 ARL-GSGDAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFL 71
Query: 64 TPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
+A A++ L G + EL V ++ R S F ++V +L D+ +++L E
Sbjct: 72 DHRAADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQF-QIFVGDLASDINDKLLCEA 130
Query: 124 FSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYVARAQKKA 160
F G + V+ G SKG+ GS+ + AQ K
Sbjct: 131 FQSCGCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQ 190
Query: 161 ERKAILRAQFERMRK--------ERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
E A +R+ E A +Y N+ +V + EL+ SQ G + VKI R
Sbjct: 191 ENSQASFAAVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIYR 249
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 42/191 (21%)
Query: 26 IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85
+D+ +L +F S KV+ + GKSKG+ FV + E A A++++ G + ++
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 86 YVGPFIRRAD-RIQEGSSFN-------------NLYVKNLDDDMTEEILVEKFSEFGKIT 131
YVG ++ + + + F NLYVKNLDD + +E L ++FS FG IT
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S + + G SKGFG +K LYVA AQ K E A L +
Sbjct: 118 SAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTS 176
Query: 169 QF-ERMRKERA 178
Q+ +RM RA
Sbjct: 177 QYMQRMASVRA 187
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N +VKNL ID+ L + FS FG I S+KV++ + G+SKG+GFV +S+PE A
Sbjct: 86 RYQGV-NLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 143
Query: 70 DAIEKLQGATVERMELYVG 88
A++++ G TV LYV
Sbjct: 144 KAVKEMNGRTVATKPLYVA 162
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K K +YV RAQKK E + + +FE+M+++ Y KN++D +D+ L++
Sbjct: 50 KELNGKQIYVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKE 109
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIF------ 250
FS GTI+S K+M + G SKG + E T ++ M G +A+
Sbjct: 110 FSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVKEM---NGRTVATKPLYVALAQ 165
Query: 251 -----PVHPT--LYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
P H T QR V P+ + N + P PPS F MA TQ R A
Sbjct: 166 LKEESPAHLTSQYMQRMASVRAVPN-----AVINPYQPAPPSGYF-MAAIPQTQNRAA 217
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 116/268 (43%), Gaps = 47/268 (17%)
Query: 1 MWSTPNSEARLS-GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGF 59
+WS P ++ + + +L I+ +LH IFS FG++ S K+ ++ GK +G G+
Sbjct: 80 LWSDPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKIPLTN-GKPRGDGY 138
Query: 60 VQYSTPESALDAIEKLQGATVE----RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
V + E A+ L A++ ++ LY P R +F N+++K L
Sbjct: 139 VTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKP-----TRKNSEETFTNVFIKPLLVKY 193
Query: 116 --TEEILVEKFSEFGKITSLVISKDANGTSKGFG-SKVLY-------------------- 152
T E L + +FG+ + I + +GTS FG +Y
Sbjct: 194 FKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGE 253
Query: 153 ----VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCG 201
RAQ KAER+A L Q R+ E LY KNI+ +++ E ++YF Q G
Sbjct: 254 FEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFG 313
Query: 202 TISSVKIMRT--DRGISKGHCMAIAQTK 227
+ I R + SKG + +TK
Sbjct: 314 EVEKCLISREAQEPHESKGFGFVLFKTK 341
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 20/186 (10%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTI--DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYG 58
++ P + N F+K L N L ++ FG+ + + + +G S +G
Sbjct: 168 LYCKPTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFG 227
Query: 59 FVQYSTPESALDAIEKLQG----------------ATVERMELYVGPFIRRADRIQEGSS 102
F + + A+ A+E L G ER R+ E +
Sbjct: 228 FCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETR 287
Query: 103 FNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN--GTSKGFGSKVLYVARAQKKA 160
NLY+KN+D + +E E F +FG++ +IS++A SKGFG + + A
Sbjct: 288 GRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNA 347
Query: 161 ERKAIL 166
+ I+
Sbjct: 348 LKNTII 353
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK----SKGYGFVQYSTPESALDA 71
N ++KN+ +I++ + + F +FG+++ K ++S+E + SKG+GFV + T E A +A
Sbjct: 290 NLYIKNIDRSINDEEFEEYFKQFGEVE--KCLISREAQEPHESKGFGFVLFKTKEGAQNA 347
Query: 72 IEKLQGATVERMELYVGPFIRRADR 96
++ ++ LYV FI + +R
Sbjct: 348 LKNTIITPLKGKILYVNYFIMKEER 372
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQ 61
W + R SG+GN F+KNL +IDN L+ FS FG+I S K+V + G +GYGFV
Sbjct: 90 WYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-FRGYGFVH 148
Query: 62 YSTPESALDAIEKLQGATVE 81
+ ESA AIE++ G +
Sbjct: 149 FEKEESATIAIERVNGTMLH 168
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV-VSQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L + L++ FS G + S +V V +S GY +V + E A A+ +
Sbjct: 18 YVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNTMN 77
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
T++ + + + R D S N+++KNLD + + L + FS FG I S I
Sbjct: 78 YDTIKGQPIRITWYQR--DPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIV 135
Query: 137 KDANGTSKGFG 147
D +G +G+G
Sbjct: 136 CDEHGF-RGYG 145
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDA 71
G N FV +L+ +D L F +FG+I + +VV +E G+SKG+G+V+Y+T E+A A
Sbjct: 300 GAKNLFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKA 359
Query: 72 IEKLQGATVERMELYVG-----PFIRRADRI-----QEGSSFNNLYVKNLDDDMTEEILV 121
+E+++G ++ + V P R DR Q+ ++V NL + E+I+
Sbjct: 360 LEEMKGKDIDGRTINVDFSAPRPENPRQDRSRLYGDQKSPESETVFVANLSFEADEQIVQ 419
Query: 122 EKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
+F FG I L I D +G KGF Y+ + + RKA+
Sbjct: 420 TEFEGFGNIVGLRIPTDPESGQPKGF----CYIQYDRVDSARKAV 460
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV NL+ D + F FG+I ++ E G+ KG+ ++QY +SA A+E++
Sbjct: 405 FVANLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMN 464
Query: 77 GATV 80
GA V
Sbjct: 465 GALV 468
>gi|344244233|gb|EGW00337.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 101
Score = 72.8 bits (177), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +S R SG+GN F+KN+ + DN L+ F+ FG+I S +VV + G SKGYGFV
Sbjct: 14 MWSQRDSSLRKSGVGNVFIKNVDKSSDNKALYDPFAAFGNILSCQVVFDENG-SKGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPF 90
T E+ AIEK+ G + +++V F
Sbjct: 73 HLKTQEA---AIEKMDGMLLNECKVFVCRF 99
>gi|123456022|ref|XP_001315750.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898436|gb|EAY03527.1| hypothetical protein TVAG_368990 [Trichomonas vaginalis G3]
Length = 330
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
SG N +VK L +T+D+++LH++FS +G++ S +V + G +G+ +VQY E A A
Sbjct: 95 SGEANLYVKGLDTTVDSIQLHELFSNYGEVISVRVPILN-GVPRGFAYVQYLKVEDAQRA 153
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGS-------SFNNLYVKNLDDDMTEEI-LVEK 123
++L +T+ E+ + +++R DR + +F N+++KNL +++ + L+
Sbjct: 154 QKELTDSTINGKEVTILKYLKREDRPMSEAMQRNLDPTFKNIFIKNLPEEINTLLKLLAL 213
Query: 124 FSEFGKITS 132
F E+G +TS
Sbjct: 214 FKEYGTVTS 222
>gi|341900768|gb|EGT56703.1| CBN-SUP-26 protein [Caenorhabditis brenneri]
Length = 386
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ LA ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 86 NLYIRGLAPNTNDDTLREMCSKYGNIASTKAIMDKSTNNCKGYGFVDFESPQAAAAAVDG 145
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + +++G + S
Sbjct: 146 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKYGMVISTR 196
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +FE M KE L
Sbjct: 197 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFENMTKEGPSL 241
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 44 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 101
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRKEER 129
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 137 KDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVD 189
++ NG K K ++V RAQKK ER+A L+ +FE++++ER Y KN++D +D
Sbjct: 4 EEMNG--KEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 190 EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
+ +L++ FS G+I+S K+M D G SKG + E T + M
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 108
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 38/137 (27%)
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMT 116
A+E++ G + ++VG ++ +R E F NLY+KNLDD +
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
+E L ++FS FG ITS + + +G SKGF GSK LYV
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 154 ARAQKKAERKAILRAQF 170
A AQ+K ERKA L Q+
Sbjct: 121 ALAQRKEERKAHLTNQY 137
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 1 RYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEAT 58
Query: 70 DAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 59 KAVTEMNGRIVGSKPLYVALAQRKEER 85
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 25/98 (25%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------------ 146
NLY+KNLDD + +E L ++FS FG ITS + + +G SKGF
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 147 -----GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K ERKA L Q+ +R+ RA
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA 102
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 39 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 96
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 97 TKAVTEMNGRIVGSKPLYVALAQRKEER 124
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++
Sbjct: 4 KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 63
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
FS G+I+S K+M D G SKG + E T + M +
Sbjct: 64 FSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 106
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 24/89 (26%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------------ 146
NLY+KNLDD + +E L ++FS FG ITS + + +G SKGF
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 147 -----GSKVLYVARAQKKAERKAILRAQF 170
GSK LYVA AQ+K ERKA L Q+
Sbjct: 104 NGRIVGSKPLYVALAQRKEERKAHLTNQY 132
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
+R G+ N ++KNL TID+ KL + FS FG I S+KV++ ++G+SKG+GFV +S+PE A
Sbjct: 39 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 96
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
A+ ++ G V LYV R+ +R
Sbjct: 97 TKAVTEMNGRIVGSKPLYVALAQRKEER 124
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 144 KGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQY 196
K K+++V RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++
Sbjct: 4 KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 63
Query: 197 FSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
FS G+I+S K+M D G SKG + E T + M +
Sbjct: 64 FSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 106
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 24/89 (26%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------------ 146
NLY+KNLDD + +E L ++FS FG ITS + + +G SKGF
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 147 -----GSKVLYVARAQKKAERKAILRAQF 170
GSK LYVA AQ+K ERKA L Q+
Sbjct: 104 NGRIVGSKPLYVALAQRKEERKAHLTNQY 132
>gi|449687377|ref|XP_002170842.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Hydra magnipapillata]
Length = 316
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 42/186 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
FVK L +++ L+ +F++FG I S V+ + +SKG G V++ST + A DAI K+ G
Sbjct: 51 FVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIRKMNG 110
Query: 78 ATVERMELYVGPFIRRADRIQE-----------------------GSSFN---------- 104
L V F + + + E S+ N
Sbjct: 111 TMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASLLDLSTRSAQSSTINPRSTKDSVKN 170
Query: 105 -----NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
NL ++NLDDD+ + L FS FGKI S + NG SKG+G YV +
Sbjct: 171 DLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYG----YVCYETNE 226
Query: 160 AERKAI 165
KAI
Sbjct: 227 EASKAI 232
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++NL +D+ L+++FS FG I+S+KV+ GKSKGYG+V Y T E A AI +
Sbjct: 176 NLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEASKAISSM 235
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILV 121
G + E V + ++ +FN N+D + EE +
Sbjct: 236 NGVQLSSKETLVITY------YEQRKNFN-----NVDGNKNEECCI 270
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 54/190 (28%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK-- 163
++VK L +D+ + L F+ FG ITS + +D N SKG G + A RK
Sbjct: 50 IFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIRKMN 109
Query: 164 ------AILRAQFERMRKERA-EL------------------------------------ 180
L +F + +KE EL
Sbjct: 110 GTMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASLLDLSTRSAQSSTINPRSTKDSVK 169
Query: 181 ---------YKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERT 231
+N++D+VD+ L + FS G I S K+M + G SKG+ +T E +
Sbjct: 170 NDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEAS 229
Query: 232 SYLRIMYAKQ 241
+ M Q
Sbjct: 230 KAISSMNGVQ 239
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 25/166 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +LA+ IDN L F+ +G+I +KV+ Q KSKGYGFV + + ESA AI +
Sbjct: 137 FVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGMN 196
Query: 77 GATVERMELYVGPFIRRADRIQEGSS--------FN-------NLYVKNLDDDMTEEILV 121
G + R ++ R+ +E + FN ++YV N+ TEE L
Sbjct: 197 GQLIGRRQIRTNWASRKPASAEEAHTKEQTFDEVFNATRADNTSVYVGNVHSSTTEEDLR 256
Query: 122 EKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
E F+ G I+ + I K +G+ +V A K+A +AI++
Sbjct: 257 EAFASIGAISEVRIFKQ-----QGYA----FVRYATKEAATRAIMQ 293
>gi|384490634|gb|EIE81856.1| hypothetical protein RO3G_06561 [Rhizopus delemar RA 99-880]
Length = 420
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +V+ L STI + ++ +G + SSK ++ Q+ G+ KGYGF + + +AIE
Sbjct: 191 NIYVRGLPSTITDGAFLEMCQAYGTVSSSKAIIDQKLGECKGYGFAMFENEKDCEEAIEG 250
Query: 75 LQGATVERMELYVG--PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
L + + VG F R +Q+ +S N+Y+ NL D+TEE L FS + I+S
Sbjct: 251 LNKSGFQASYAKVGQESFSSRLRHLQDETS-TNIYISNLPLDITEEKLEVLFSPYQTISS 309
Query: 133 LVISKDANGTSKGFG 147
++ +G S+G G
Sbjct: 310 RILRDPQSGISRGVG 324
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ NL I KL +FS + I S + Q G S+G GF + + E+A IEK
Sbjct: 282 NIYISNLPLDITEEKLEVLFSPYQTISSRILRDPQSGISRGVGFARMTDREAASAIIEKF 341
Query: 76 QGATVE 81
G +E
Sbjct: 342 NGYVIE 347
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTP 65
+E+ + N F+ NL+ +D L + F +FG++ +++ ++ G+SKG+G+V+++
Sbjct: 232 TESNPDAVANLFIGNLSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFTNA 291
Query: 66 ESALDAIEKLQGATVERMELYV-----------GPFIRRADRIQE-----GSSFNNLYVK 109
E A A+E + ++ + V GP R DR Q+ G ++
Sbjct: 292 EDAAKALEAKNESLLDNRNIRVDFSTPRDKSNAGPQQRSNDRQQKFGDAPGEPTATIWCG 351
Query: 110 NLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
NL D TE+++ E F+E G + S+ + D + G KGFG
Sbjct: 352 NLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFG 390
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
I N FV L+ +D+ L + F KFG++ S++V+ + +SKG+G+V +++PE A A+
Sbjct: 400 IKNLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAV 459
Query: 73 EKLQGATVERMELYVGPFIRRADR-IQEGSSF---------NNLYVKNLDDDMTEEILVE 122
E + G ++ + V + +R QE SF L++ NL T++ + E
Sbjct: 460 EAMAGTEIDGRTINVDFSAPKPERPPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYE 519
Query: 123 KFSEFGKITSLVISKDANGTS-KGFGSKVLYVARAQKKAERKAI 165
FSE+G I S+ + D KGFG YV A ++A A+
Sbjct: 520 AFSEYGDINSVRLPTDPETERIKGFG----YVEFATQEAATAAV 559
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL TIDN L+ IFS FG+I S KV ++G KGYGFV
Sbjct: 384 MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFV 442
Query: 61 QY 62
+
Sbjct: 443 HF 444
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72
+ + +V +L + L++ FS G I S ++ + +S GY +V Y P A A+
Sbjct: 309 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 368
Query: 73 EKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEF 127
E L +G V M P +R+ S N+++KNL + + L FS F
Sbjct: 369 ETLNFDVIKGRPVRIMWSQRDPSLRK-------SGVGNVFIKNLGKTIDNKALYNIFSAF 421
Query: 128 GKITSLVISKDANGTSKGFG 147
G I S ++ D G KG+G
Sbjct: 422 GNILSCKVACDEKG-PKGYG 440
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L ++TE +L EKFS G I S+ I +D T + G YV Q ++A
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD-KITRRSLG--YAYVNYQQPVDAKRA 367
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN+ +D L FS G I S
Sbjct: 368 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC 427
Query: 207 KIMRTDRG 214
K+ ++G
Sbjct: 428 KVACDEKG 435
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 151 LYVARAQKKAERKAILRAQFERMRKERA------ELY-KNINDEVDEIELKQYFSQCGTI 203
LYVARAQ KAER A+L+ QF + + LY KN+ + VD+ ELK+ F GTI
Sbjct: 50 LYVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTI 109
Query: 204 SSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK--QGPGLASTIFPVHPTLYQRAL 261
+SVK+M D+G+S+G T E T + M+ K G L + +R
Sbjct: 110 TSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 169
Query: 262 QVYQAPDFRHGGMIPNGF 279
Q Y+AP G NG
Sbjct: 170 QRYRAPPQHEMGGFNNGL 187
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
R G+ N +VKNL T+D+ +L ++F FG I S KV+ +G S+G+GFV +ST E A
Sbjct: 78 GRFGGV-NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEA 136
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQ 98
A+ + + LYVG +R R++
Sbjct: 137 TKAVTDMHLKLIGGKPLYVGMHEKREQRLE 166
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147
NLYVKNL + + + L F FG ITS+ + D G S+GFG
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFG 126
>gi|392894640|ref|NP_001254896.1| Protein SUP-26, isoform m [Caenorhabditis elegans]
gi|293324778|emb|CBK55594.1| Protein SUP-26, isoform m [Caenorhabditis elegans]
Length = 438
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 168 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 218
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 219 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 263
>gi|392894642|ref|NP_001254897.1| Protein SUP-26, isoform l [Caenorhabditis elegans]
gi|293324777|emb|CBK55593.1| Protein SUP-26, isoform l [Caenorhabditis elegans]
Length = 464
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 168 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 218
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 219 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 263
>gi|307206990|gb|EFN84815.1| RNA-binding motif, single-stranded-interacting protein 1
[Harpegnathos saltator]
Length = 382
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 39/297 (13%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L + S++G I S+K ++ + K KGYGFV + +P +A A++
Sbjct: 51 NLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESPLAAEGAVKA 110
Query: 75 LQGATVERMELYVGPF-IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133
L ++ VG + +RR D QE NLY+ NL + E + +++G++ S
Sbjct: 111 LVAKGIQAQMAKVGIWLLRRLDSQQEQDP-TNLYIANLPLNFKENDVETLLAQYGQVIST 169
Query: 134 VISKDANGTSKGFG----------SKVLYVARAQKKAERKAILRAQFERMRKERAELYKN 183
I +D +G SKG G +++ + + A K L +F ++ L+K+
Sbjct: 170 RILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALAGAKDPLLVKFADGGNKKKSLFKS 229
Query: 184 -INDEVDE-IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQ 241
I E E + L S G G++ H + A T Y R Y++
Sbjct: 230 TIWRETGENMTLNYDTSGVG----------QNGVAATHMLPAA----TLTQYSR-HYSQA 274
Query: 242 GPGLASTIFP-VHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
PG + P V P L Q A P + MIP S P +P + M P TQ
Sbjct: 275 LPGYSVPGTPWVAPYLVQTA-----PPHMQQVDMIP---SADPSNPQYSMIPQLTTQ 323
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL--VISKDANGTSKGFG--------- 147
E S NLY++ L+ + T++ LV S++G ITS ++ K+ N KG+G
Sbjct: 45 EQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTN-KCKGYGFVDFESPLA 103
Query: 148 ----SKVLYVARAQKKAERKAI--LRAQFERMRKERAELY-KNINDEVDEIELKQYFSQC 200
K L Q + + I LR + ++ LY N+ E +++ +Q
Sbjct: 104 AEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPTNLYIANLPLNFKENDVETLLAQY 163
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
G + S +I+R G SKG A ++K + +++ K
Sbjct: 164 GQVISTRILRDTSGQSKGVGFARMESKEKCEQIIQMFNGK 203
>gi|225682885|gb|EEH21169.1| nucleolysin TIA-1 [Paracoccidioides brasiliensis Pb03]
Length = 471
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +QS K++ + K YGFV+Y P +A A+ L G
Sbjct: 103 YVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMATLNG 162
Query: 78 ATVERMELYVG-PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + ++ ++ S+ +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 163 RRVHQSEIRVNWAYQSNSNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 222
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 223 WDMKTGRSRGYG----FVAFRERSDAEKAL 248
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 193 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMD 252
Query: 77 G 77
G
Sbjct: 253 G 253
>gi|392894632|ref|NP_001254892.1| Protein SUP-26, isoform q [Caenorhabditis elegans]
gi|293324785|emb|CBK55601.1| Protein SUP-26, isoform q [Caenorhabditis elegans]
Length = 476
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 149 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 208
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 209 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 259
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 260 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 304
>gi|392894652|ref|NP_001254901.1| Protein SUP-26, isoform g [Caenorhabditis elegans]
gi|293324774|emb|CBK55590.1| Protein SUP-26, isoform g [Caenorhabditis elegans]
Length = 380
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 168 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 218
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 219 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 263
>gi|324507276|gb|ADY43089.1| RNA-binding motif, single-stranded-interacting protein 1 [Ascaris
suum]
Length = 673
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQY 62
+P+S+A LS N +++ L + L Q ++G I S+K ++ + G+ KGYGFV +
Sbjct: 290 SPHSDAPLSST-NVYIRGLDPNTTDEDLRQKCDQYGVILSTKAIMDKATGQCKGYGFVDF 348
Query: 63 STPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVE 122
+ E+A+ A+E L E V + + Q+ NLY NL + TE+ L +
Sbjct: 349 ESAEAAMRAVEGL------NQEGKVQAQMAKVSIAQQEQDPTNLYFANLPANFTEQDLQK 402
Query: 123 KFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
FG + S I K+ +G S+G G AR KK I+R
Sbjct: 403 TLERFGMVISTRILKNQDGASRGVG-----FARMDKKELCDQIIR 442
>gi|392894654|ref|NP_001254902.1| Protein SUP-26, isoform i [Caenorhabditis elegans]
gi|293324775|emb|CBK55591.1| Protein SUP-26, isoform i [Caenorhabditis elegans]
Length = 406
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 168 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 218
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 219 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 263
>gi|156347535|ref|XP_001621665.1| hypothetical protein NEMVEDRAFT_v1g5820 [Nematostella vectensis]
gi|156207828|gb|EDO29565.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 9/108 (8%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G L+ RA+K+AER A
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLV-TRRSLGY-ALWAGRAKKRAERAA 71
Query: 165 ILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISS 205
++A+ E+ R+ER LY KN++D +D+ L++ FS GTISS
Sbjct: 72 EVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISS 119
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
I + +V +LA + L++ FS G + S +V +V++ +S GY + A
Sbjct: 12 IASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTR--RSLGYALWAGRAKKRAER 69
Query: 71 AIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKI 130
A E A +E+ +R +RI N LY+KNLDD + +E L E+FS +G I
Sbjct: 70 AAE--VKAEIEK---------KRQERINRFQGVN-LYIKNLDDPIDDERLREEFSPYGTI 117
Query: 131 TS 132
+S
Sbjct: 118 SS 119
>gi|401422974|ref|XP_003875974.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492214|emb|CBZ27488.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 696
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N FV L ++ + +L ++F K G+I+S+KV++ G+S+G FV++ E+A +A++
Sbjct: 234 NLFVCGLPVSVRDKELLELFEKHGEIESAKVMLDIHTGRSRGIAFVKFKNVENAENAVDA 293
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G TV ++ V RA + G+ N +V+N+ ++ L E F++FG++T L
Sbjct: 294 LNGTTVNGHQITVRVANSRAAYL-PGNPTNKTFVRNVPLTVSRTTLFEYFAQFGEVTDLS 352
Query: 135 ISKD 138
I D
Sbjct: 353 IKSD 356
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 2 WSTPN---SEARLSGIGNA------------------FVKNLASTIDNLKLHQIFSKFGD 40
W T N SE ++SG+GN FV NL +D+ +L QIF G
Sbjct: 94 WGTQNFGDSEPQVSGVGNEDEEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGV 153
Query: 41 IQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ- 98
++ ++V+ ++E +S+G+GFV ST E A A+E L G + L V R R +
Sbjct: 154 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPER 213
Query: 99 ---EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL-VISKDANGTSKGFGSKVLYVA 154
E +YV NL D+ L + FSE GK+ S V+S G S+GFG +V+
Sbjct: 214 PPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFG----FVS 269
Query: 155 RAQKKAERKAI 165
A + AI
Sbjct: 270 MASESEMNDAI 280
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL +DN +L Q+FS+ G + S++VV +E G+S+G+GFV ++ DAI L
Sbjct: 225 YVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALD 284
Query: 77 GATVE 81
G T++
Sbjct: 285 GQTLD 289
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESAL 69
R S N V L + ++ L F +FG I S K V+ G+ +G+GFV + P+ A
Sbjct: 331 RRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAE 390
Query: 70 DAIEKLQG--ATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEK 123
AI + G A +R +L V PF R R QE +F N+YVK+L D EE L +
Sbjct: 391 RAIAEANGKDAGGDR-KLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKL 449
Query: 124 FSEFGKITS 132
F +G ITS
Sbjct: 450 FEPYGDITS 458
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 31/250 (12%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPE 66
E R N +VK+L D +L ++F +GDI S + + + + YGFV ++ E
Sbjct: 423 EERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTE 482
Query: 67 SALDAIEKLQGATVERMELYV-GPFIRRADRIQE---------GSSFNNLYVKNLDDDMT 116
+A +E +G +R YV G ++++ GS +++ D ++
Sbjct: 483 AAQKCVE--EGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 540
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFGSKV-------LYVARAQKKAERKAILRAQ 169
IL F E G+ T + K G + + LYV RAQ K ER LR +
Sbjct: 541 GFIL---FKEHGEET---VDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRR 594
Query: 170 FERMRKERAE-----LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224
+ R+E + KN N+ V E +L+++F +CG + VK+MR G+S+ I
Sbjct: 595 LQERRRELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIF 654
Query: 225 QTKRERTSYL 234
T+ E S +
Sbjct: 655 ATREEAESAI 664
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 35/221 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAI---- 72
+V +L+ ++ +L +FS G + S +V Q S GYG+V ++ E A A+
Sbjct: 251 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMGQLN 310
Query: 73 -EKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
L G + M++ P RR+D N+ V L D T L + F +FGKI
Sbjct: 311 FHDLHGRHIRIMKVERDPKKRRSDP-------RNIVVTGLPADTTSVHLRDTFEQFGKIL 363
Query: 132 SLVISKDANGTSKGFG------SKVLYVARAQKK-----AERKAIL-----RAQFERMRK 175
S D +G +GFG KV A A+ +RK + R Q E+ ++
Sbjct: 364 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 423
Query: 176 ERAELYKNI-----NDEVDEIELKQYFSQCGTISSVKIMRT 211
ER + + N+ + DE EL + F G I+S K +RT
Sbjct: 424 ERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITS-KALRT 463
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
GN FVKN + L + F + G + KV+ EG S+ +GFV ++T E A AI K
Sbjct: 607 GNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAK 666
Query: 75 LQGATVERMELYVGPFIRRADRIQE 99
T++ +YV + R +R ++
Sbjct: 667 KNRQTLQDRPIYVAFHLTRQERCKQ 691
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGY--GFVQYSTPESALDAIEKL 75
+V L + L QIF G +QS K++ + +SKGY GFV+Y P+ A A++ L
Sbjct: 85 YVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPQCAERAMQTL 144
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFN--NLYVKNLDDDMTEEILVEKFSEFGKITSL 133
G V + E+ V + +++ I + + N +++V +L +++ +E+L++ FS FG ++
Sbjct: 145 NGRRVHQQEIRVN-WAYQSNTISKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEA 203
Query: 134 VISKD-ANGTSKGFG 147
+ D G S+G+G
Sbjct: 204 RVMWDMKTGRSRGYG 218
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 37/158 (23%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 177 FVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVSFRDRGDAEKALSSMD 236
Query: 77 G-------------------------ATVERMELYVGPFIRRADRIQEGSSF-------- 103
G A V+ P+ Q SF
Sbjct: 237 GEWLGSRAIRCNWANQKGQPSYSQAQAMVQMGMTPTTPYGHHTFPTQGAQSFEMIVQQTP 296
Query: 104 ---NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD 138
YV NL T+ LV F FG +T D
Sbjct: 297 QWQTTCYVGNLTPYTTQNDLVPLFQNFGYVTETRFHSD 334
>gi|392894636|ref|NP_001254894.1| Protein SUP-26, isoform o [Caenorhabditis elegans]
gi|293324780|emb|CBK55596.1| Protein SUP-26, isoform o [Caenorhabditis elegans]
Length = 374
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 44 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 103
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 104 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 154
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 155 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 199
>gi|17554536|ref|NP_497855.1| Protein SUP-26, isoform b [Caenorhabditis elegans]
gi|3879059|emb|CAA90773.1| Protein SUP-26, isoform b [Caenorhabditis elegans]
Length = 409
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 168 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 218
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 219 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 263
>gi|392894638|ref|NP_001254895.1| Protein SUP-26, isoform n [Caenorhabditis elegans]
gi|293324779|emb|CBK55595.1| Protein SUP-26, isoform n [Caenorhabditis elegans]
Length = 412
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 82 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 141
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 142 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 192
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 193 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 237
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +QS K++ + K YGFV+Y P +A A++ L G
Sbjct: 93 YVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLNG 152
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L + FS FG I+ +
Sbjct: 153 RRVHQSEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSNEVNDEVLFQAFSAFGSISEARVM 212
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 213 WDMKTGRSRGYG----FVAFRERADAEKAL 238
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG I ++V+ + G+S+GYGFV + A A+ +
Sbjct: 183 FVGDLSNEVNDEVLFQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD 242
Query: 77 G 77
G
Sbjct: 243 G 243
>gi|392894634|ref|NP_001254893.1| Protein SUP-26, isoform k [Caenorhabditis elegans]
gi|293324787|emb|CBK55603.1| Protein SUP-26, isoform k [Caenorhabditis elegans]
Length = 371
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 44 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 103
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 104 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 154
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 155 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 199
>gi|449297589|gb|EMC93607.1| hypothetical protein BAUCODRAFT_76311, partial [Baudoinia
compniacensis UAMH 10762]
Length = 253
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 23/151 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
FV L+ +D L + F +FG++ S++++ +E GKSKG+GFV++ + + A+ A+E Q
Sbjct: 4 FVGGLSWNVDEEWLMREFEEFGELASTRIMTDRETGKSKGFGFVEFKSVDGAIKAVEGKQ 63
Query: 77 GATVE----RMELYVG--------PFIRRADRI-------QEGSSFNNLYVKNLDDDMTE 117
G ++ R++ G P R +DR +E SS L+V N+ D E
Sbjct: 64 GGEIDGRNVRLDFTEGRSQNNQRTPQQRSSDRAGKFGDVPKEPSS--TLFVGNVSFDANE 121
Query: 118 EILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
+++ E FSE+G I ++ + D + G KGFG
Sbjct: 122 DMVTEVFSEYGSIKAVRLPTDRDTGALKGFG 152
>gi|339898392|ref|XP_003392565.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|321399546|emb|CBZ08733.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 693
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N FV L ++ + +L ++F K G+I+S+KV++ G+S+G FV++ E A +A++
Sbjct: 231 NLFVCGLPVSVRDKELLELFEKHGEIESAKVMLDIHTGRSRGIAFVKFKNVEHAENAVDA 290
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G TV ++ V RA + G+ N +V+N+ ++ L E F++FG++T L
Sbjct: 291 LNGTTVNGHQITVRVANSRAAYL-PGNPTNKTFVRNVPLTVSRTTLFEYFAQFGEVTDLS 349
Query: 135 ISKD 138
I D
Sbjct: 350 IKSD 353
>gi|384491739|gb|EIE82935.1| hypothetical protein RO3G_07640 [Rhizopus delemar RA 99-880]
Length = 451
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +V+ L S+I + ++ ++G + SSK ++ Q+ G+ KGYGF + ++ +AIE
Sbjct: 177 NIYVRGLPSSITDESFLEMCQEYGTVSSSKAIIDQKTGECKGYGFAMFEDEKNCEEAIEG 236
Query: 75 LQGATVERMELYVG--PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS 132
L A + VG F R +Q+ +S N+Y+ NL D+ EE L E F + ++S
Sbjct: 237 LNKAGYQASYAKVGQESFSSRLRHLQDETS-TNIYISNLPLDVNEEKLEELFLPYQTVSS 295
Query: 133 LVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
++ +G S+G G AR ++ AI+
Sbjct: 296 RILRDPQSGISRGVG-----FARMSERNAATAIIE 325
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++ NL ++ KL ++F + + S + Q G S+G GF + S +A IE+
Sbjct: 268 NIYISNLPLDVNEEKLEELFLPYQTVSSRILRDPQSGISRGVGFARMSERNAATAIIERF 327
Query: 76 QGATVE 81
G ++E
Sbjct: 328 NGHSIE 333
>gi|157870247|ref|XP_001683674.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126740|emb|CAJ05119.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 692
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N FV L ++ + +L ++F K G+I+S+KV++ G+S+G FV++ E A +A++
Sbjct: 231 NLFVCGLPVSVRDKELLELFEKHGEIESAKVMLDIHTGRSRGIAFVKFKNVEHAENAVDA 290
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G TV ++ V RA + G+ N +V+N+ ++ L E F++FG++T L
Sbjct: 291 LNGTTVNGHQITVRVANSRAAYL-PGNPTNKTFVRNVPLTVSRTTLFEYFAQFGEVTDLS 349
Query: 135 ISKD 138
I D
Sbjct: 350 IKSD 353
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +Q+ K++ + K YGFV+Y P SA A++ L G
Sbjct: 91 YVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSAERAMQTLNG 150
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 151 RRVHQAEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 210
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA + KA+
Sbjct: 211 WDMKTGRSRGYG----FVAFRDRPEAEKAL 236
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI--SKDANGTSKG 145
GPF RRA + LYV LD +TE++L + F G + ++ I K+A G + G
Sbjct: 75 GPFARRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYG 131
Query: 146 F------GSKVLYV----ARAQKKAERKAILRAQFERMRKER---------AELYKNIND 186
F GS + R +AE + Q KE +L +ND
Sbjct: 132 FVEYDDPGSAERAMQTLNGRRVHQAEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVND 191
Query: 187 EVDEIELKQYFSQCGTISSVKIMRTDR-GISKGHCMAIAQTKRERTSYLRIM 237
EV L Q FS G++S ++M + G S+G+ + + E L M
Sbjct: 192 EV----LLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSM 239
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 181 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMD 240
Query: 77 G 77
G
Sbjct: 241 G 241
>gi|392894644|ref|NP_001254898.1| Protein SUP-26, isoform r [Caenorhabditis elegans]
gi|293324786|emb|CBK55602.1| Protein SUP-26, isoform r [Caenorhabditis elegans]
Length = 424
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 149 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 208
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 209 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 259
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 260 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 304
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ L + + L QIF G +QS K++ + K YGFV+Y P +A A+ L G
Sbjct: 95 YIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMSTLNG 154
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 155 RRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 214
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 215 WDMKTGRSRGYG----FVAFRERPDAEKAL 240
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 185 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMD 244
Query: 77 G 77
G
Sbjct: 245 G 245
>gi|403361976|gb|EJY80703.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 592
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 3 STPNSEARLSGIGNA-------FVKNLASTIDNLKLHQIFSK-FGD--IQSSKVVVSQEG 52
+ P S+ + +GN VKNL +I + +L +IF+K FG+ + S+KV V+ +
Sbjct: 84 ALPYSKQAIRSLGNEMGQTNVLLVKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADY 143
Query: 53 KSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLD 112
S G+G V ++ P+ A A+ A + P+ + DR + SFNN+Y+KN
Sbjct: 144 SSNGHGQVIFACPQLAEQAL-----AKAGEFNFQISPY-QPKDRRELRKSFNNIYIKNFP 197
Query: 113 DDMTEEILVEKFSEFGKITSLVISKD-ANGT---------------SKGFGSKV------ 150
+ +E + + F ++G I S VI D GT +K +G K
Sbjct: 198 SNWNKEQIEQIFGKYGTIKSTVIKMDIVQGTYEEAPYAFVCYEDPENKEYGPKCAQNAIT 257
Query: 151 -----------LYVARA---QKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQY 196
LYV A + + K I + +F+ +K KN D+ E +L+ Y
Sbjct: 258 LENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYKKGCNLYVKNFPDDTTEEQLQAY 317
Query: 197 FSQCGTISSVKIMRTD 212
F G I S+K+ D
Sbjct: 318 FENYGEIESIKLNHKD 333
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN +L F +G+I+S K+ ++GK+ Y FV Y PESA A ++
Sbjct: 299 NLYVKNFPDDTTEEQLQAYFENYGEIESIKLN-HKDGKA-VYAFVCYKDPESAAFAKQQS 356
Query: 76 QGATVERMELYVGPFIRRADRI------QEGSSFNNLYVKNL 111
Q T +L++ + ++ R+ ++ + F NL ++L
Sbjct: 357 QTETFHGKQLFINFYEQKEVRLIQQEDARDRTDFTNLRKQSL 398
>gi|398016131|ref|XP_003861254.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499479|emb|CBZ34552.1| hypothetical protein, conserved [Leishmania donovani]
Length = 693
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N FV L ++ + +L ++F K G+I+S+KV++ G+S+G FV++ E A +A++
Sbjct: 231 NLFVCGLPVSVRDKELLELFEKHGEIESAKVMLDIHTGRSRGIAFVKFKNVEHAENAVDA 290
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G TV ++ V RA + G+ N +V+N+ ++ L E F++FG++T L
Sbjct: 291 LNGTTVNGHQITVRVANSRAAYL-PGNPTNKTFVRNVPLTVSRTTLFEYFAQFGEVTDLS 349
Query: 135 ISKD 138
I D
Sbjct: 350 IKSD 353
>gi|66357960|ref|XP_626158.1| T8M16_190-plant like protein with RRM domain [Cryptosporidium
parvum Iowa II]
gi|46227101|gb|EAK88051.1| T8M16_190-plant like protein with RRM domain [Cryptosporidium
parvum Iowa II]
Length = 600
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 17/154 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK--- 74
++KNL + + + ++FS+FGD++ +V+ ++GKS+GY FV + T ESAL A +
Sbjct: 100 YIKNLPFSANTESVIEVFSQFGDVEEG-IVLKKDGKSRGYAFVTFKTIESALLACKNPVS 158
Query: 75 LQGATVERMELYVGPF---IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ G + ++L PF +R+D I+ L+V+NL + E+ L E ++G++
Sbjct: 159 MSGRFL-MVKLAADPFPFETKRSDAIRRK-----LFVRNLGFETNEDSLSEVMGQYGELE 212
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
VI + +G SKG+G +V A +A KA+
Sbjct: 213 ESVILRTKSGESKGYG----FVTFASSEATIKAL 242
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 59 FVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
F + TP S +E L GA +E ++ F I E S LY+KNL E
Sbjct: 56 FRRVLTPLSKDQLVELLAGACIEDQKILQRVFAV----ICESRSHRRLYIKNLPFSANTE 111
Query: 119 ILVEKFSEFGKITS-LVISKDANGTSKGFG--------SKVLYVARAQKKAERKAILRAQ 169
++E FS+FG + +V+ KD G S+G+ S +L + R +++
Sbjct: 112 SVIEVFSQFGDVEEGIVLKKD--GKSRGYAFVTFKTIESALLACKNPVSMSGRFLMVKLA 169
Query: 170 -----FERMRKE--RAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
FE R + R +L+ +N+ E +E L + Q G + I+RT G SKG+
Sbjct: 170 ADPFPFETKRSDAIRRKLFVRNLGFETNEDSLSEVMGQYGELEESVILRTKSGESKGY 227
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
FV+NL + L ++ ++G+++ S ++ ++ G+SKGYGFV +++ E+ + A+++
Sbjct: 188 FVRNLGFETNEDSLSEVMGQYGELEESVILRTKSGESKGYGFVTFASSEATIKALQQ 244
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +QS K++ + + YGFV+Y P +A A++ L G
Sbjct: 93 YVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLNG 152
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 153 RRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 212
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 213 WDMKTGRSRGYG----FVAFRERADAEKAL 238
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 183 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD 242
Query: 77 G 77
G
Sbjct: 243 G 243
>gi|67615331|ref|XP_667430.1| RNA-binding protein [Cryptosporidium hominis TU502]
gi|54658566|gb|EAL37200.1| RNA-binding protein [Cryptosporidium hominis]
Length = 599
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 17/154 (11%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK--- 74
++KNL + + + ++FS+FGD++ +V+ ++GKS+GY FV + T ESAL A +
Sbjct: 100 YIKNLPFSANTESVIEVFSQFGDVEEG-IVLKKDGKSRGYAFVTFKTIESALLACKNPVS 158
Query: 75 LQGATVERMELYVGPF---IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ G + ++L PF +R+D I+ L+V+NL + E+ L E ++G++
Sbjct: 159 MSGRFL-MVKLAADPFPFETKRSDAIRRK-----LFVRNLGFETNEDSLSEVMGQYGELE 212
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
VI + +G SKG+G +V A +A KA+
Sbjct: 213 ESVILRTKSGESKGYG----FVTFASSEATIKAL 242
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 59 FVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
F + TP S +E L GA +E ++ F I E S LY+KNL E
Sbjct: 56 FRRVLTPLSKDQLVELLAGACIEDQKILQRVFAV----ICESRSHRRLYIKNLPFSANTE 111
Query: 119 ILVEKFSEFGKITS-LVISKDANGTSKGFG--------SKVLYVARAQKKAERKAILRAQ 169
++E FS+FG + +V+ KD G S+G+ S +L + R +++
Sbjct: 112 SVIEVFSQFGDVEEGIVLKKD--GKSRGYAFVTFKTIESALLACKNPVSMSGRFLMVKLA 169
Query: 170 -----FERMRKE--RAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
FE R + R +L+ +N+ E +E L + Q G + I+RT G SKG+
Sbjct: 170 ADPFPFETKRSDAIRRKLFVRNLGFETNEDSLSEVMGQYGELEESVILRTKSGESKGY 227
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74
FV+NL + L ++ ++G+++ S ++ ++ G+SKGYGFV +++ E+ + A+++
Sbjct: 188 FVRNLGFETNEDSLSEVMGQYGELEESVILRTKSGESKGYGFVTFASSEATIKALQQ 244
>gi|17554534|ref|NP_497856.1| Protein SUP-26, isoform a [Caenorhabditis elegans]
gi|3879058|emb|CAA90772.1| Protein SUP-26, isoform a [Caenorhabditis elegans]
Length = 357
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 82 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 141
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 142 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 192
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 193 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 237
>gi|392894647|ref|NP_001254899.1| Protein SUP-26, isoform j [Caenorhabditis elegans]
gi|293324776|emb|CBK55592.1| Protein SUP-26, isoform j [Caenorhabditis elegans]
Length = 316
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 44 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 103
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 104 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 154
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 155 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 199
>gi|392894649|ref|NP_001254900.1| Protein SUP-26, isoform f [Caenorhabditis elegans]
gi|293324773|emb|CBK55589.1| Protein SUP-26, isoform f [Caenorhabditis elegans]
Length = 354
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +++ L ++ L ++ SK+G+I S+K ++ + KGYGFV + +P++A A++
Sbjct: 82 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 141
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L V+ + A Q+ NLY+ NL D TE++L + ++FG + S
Sbjct: 142 LNTEGVQ---------AQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTR 192
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILRA----QFERMRKERAEL 180
I + + S+G G AR K + + I+ A +F+ M KE L
Sbjct: 193 ILRTPDNQSRGVG-----FARMDSKEKCEVIISALNGGRFDTMSKEGPAL 237
>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
Length = 1145
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSK------------G 56
A L + N V N+ N L +F +FG+I+S KVV +++ S G
Sbjct: 698 ADLDALTNLIVHNIPKHFTNEDLKDLFEEFGEIESYKVVANRKAPSTLLPQQPPPQANMG 757
Query: 57 YGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
YGFV++ ESA AIE + G + + V A + S+ NLY+ L+ +T
Sbjct: 758 YGFVKFVHSESAAAAIESMNGHMTDSKTIKVS----YATPTSQQSTHANLYINRLEPHVT 813
Query: 117 EEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147
+E L E FS+FG++ I D N TS+ G
Sbjct: 814 KEDLAEAFSKFGELVETRILMDLNTNTSRCVG 845
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEK 74
N V L T+ + + +Q+F+ G + S++++ Q G S GYGFV Y PE A AI++
Sbjct: 84 NLIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQ 143
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L G ++ + V F + A S NLYV L+ D +EE L ++FS +G I
Sbjct: 144 LNGHPIQHKTIKV-AFSKPAG---ADSKNINLYVAGLNPDTSEESLKQRFSSYGTIIQTR 199
Query: 135 ISKDANGT-SKGFGSKVLYVARAQKKAERKAILRAQFER 172
+ KD N G G VL+ + + A KA+ A F +
Sbjct: 200 VLKDKNTNLCSGIGF-VLFNTKDEAMAAIKALNGAVFSQ 237
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N V L T+ ++ +FS GD++S K++ + G+S GYGFV Y PE A AI
Sbjct: 28 NLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINT 87
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSL 133
G ++ + V F R + +G+ NLYV L MT++ L F+ +G+ ITS
Sbjct: 88 FNGLRLQNKTIKVS-FARPSSDAIKGA---NLYVSGLSKSMTQQDLENLFNAYGQIITSR 143
Query: 134 VISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
++ + G SKG G ++ Q+ +AI
Sbjct: 144 ILCDNITGLSKGVG----FIRFDQRSEAERAI 171
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV NLA + L Q+F FG +QS KV+ Q K KG+GFV + + A+ A++ L
Sbjct: 258 FVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSLN 317
Query: 77 GATVERMELYV 87
G T+ L V
Sbjct: 318 GYTLGNRVLQV 328
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEK 74
N +V L+ ++ L +F+ +G I +S+++ G SKG GF+++ A AI++
Sbjct: 114 NLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQ 173
Query: 75 LQGAT 79
L G T
Sbjct: 174 LNGTT 178
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL +D+ +L Q+F + G ++ S+V+ ++E +S+G+GFV ST E A A+E
Sbjct: 118 YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFH 177
Query: 77 GATVERMELYVGPFIRRADRIQE-----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
V L V R R++ GSSF +YV NL + + LVE FSE GK+
Sbjct: 178 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSF-RIYVGNLPWQVDDSRLVELFSEHGKVV 236
Query: 132 SLVISKDAN-GTSKGFG 147
+ D + G S+GFG
Sbjct: 237 DARVVYDRDTGRSRGFG 253
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEKLQ 76
+V NL +D+ +L ++FS+ G + ++VV ++ G+S+G+GFV ++ DAI L
Sbjct: 212 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALD 271
Query: 77 GATVERMELYV 87
G ++E L V
Sbjct: 272 GQSLEGRALRV 282
>gi|303314025|ref|XP_003067021.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106689|gb|EER24876.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320039295|gb|EFW21229.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides posadasii str. Silveira]
Length = 483
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +QS K++ + K YGFV+Y P +A A++ L G
Sbjct: 95 YVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMQTLNG 154
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 155 RRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 214
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 215 WDMKTGRSRGYG----FVAFRERADAEKAL 240
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 185 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD 244
Query: 77 G 77
G
Sbjct: 245 G 245
>gi|345493910|ref|XP_003427180.1| PREDICTED: protein alan shepard-like isoform 4 [Nasonia
vitripennis]
Length = 575
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 124/299 (41%), Gaps = 39/299 (13%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +++ L + L + S++G I S+K ++ + K KGYGFV + +P +A A++
Sbjct: 241 NLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESPVAAEGAVKA 300
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L ++ VG ++ R Q+ NLY+ NL E + +++G++ S
Sbjct: 301 LVAKGIQAQMAKVGIWLIRRLASQQEQDPTNLYIANLPLSFKENDVEGLLAQYGQVISTR 360
Query: 135 ISKDANGTSKGFGSKVLYVARAQKKAERKAILR---------------AQFERMRKERAE 179
I +D +G SKG G AR + K + + I++ +F ++
Sbjct: 361 ILRDTSGQSKGVG-----FARMESKEKCEQIIQMFNGKALHGGKDPLLVKFADGGSKKKS 415
Query: 180 LYKN-INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238
LYK+ I E ++ Q + S+V G++ H + A + Y + M
Sbjct: 416 LYKSTIWRETGDVSNSQNMTLNYDTSAVG----QNGVATAHMLPAATLAQYGRHYSQAMP 471
Query: 239 AKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQ 297
PG V P L Q P + M+P S P +P + M P TQ
Sbjct: 472 GYNVPGAPW----VTPYLVQT------PPHMQQVDMMP---SADPSNPQYSMIPQLATQ 517
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 99 EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL--VISKDANGTSKGFG--------- 147
E S NLY++ L+ + T++ LV S++G ITS ++ K+ N KG+G
Sbjct: 235 EQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTN-KCKGYGFVDFESPVA 293
Query: 148 ----SKVLYVARAQKKAERKAI--LRAQFERMRKERAELY-KNINDEVDEIELKQYFSQC 200
K L Q + + I +R + ++ LY N+ E +++ +Q
Sbjct: 294 AEGAVKALVAKGIQAQMAKVGIWLIRRLASQQEQDPTNLYIANLPLSFKENDVEGLLAQY 353
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
G + S +I+R G SKG A ++K + +++ K
Sbjct: 354 GQVISTRILRDTSGQSKGVGFARMESKEKCEQIIQMFNGK 393
>gi|344250403|gb|EGW06507.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 101
Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + SG N F++N+ +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 14 MWSQRDPSLGKSGGRNVFIQNVDKSIDNKALYDTFSAFGNILSGKVVCDENG-SQGYGFV 72
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPF 90
+ T E+ AIEK+ G + +++VG F
Sbjct: 73 HFKTQEA---AIEKMDGVLLNDCKVFVGRF 99
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPE 66
E + + + N + L ++ + KLHQ+F++ G I++ +V+ + G S G+GFV + PE
Sbjct: 2 EPQDTSMTNLIINYLPQSMTDKKLHQMFTQIGQIEACRVMKDVKTGYSFGFGFVNFVRPE 61
Query: 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSE 126
A AIE + G VE L V + R A E NLYV+NL +TE L + F+
Sbjct: 62 DASKAIEVMNGLQVENKRLKVS-YARPAG---EDIKDTNLYVQNLPRSITERELEDLFAP 117
Query: 127 FGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167
+G+I I KD G V +V +K+ +KAI++
Sbjct: 118 YGQIVQKNILKDK---YSGLPRGVAFVRYNKKEDAQKAIIQ 155
>gi|147855763|emb|CAN83443.1| hypothetical protein VITISV_005822 [Vitis vinifera]
Length = 199
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 34 IFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93
+F K GDI S KVVV+ +GKSKG+GFVQ+ + E A IEKL G+ ++ + Y G F+ +
Sbjct: 1 MFKKSGDILSCKVVVTGDGKSKGHGFVQFESKEYANATIEKLNGSIIDGKQTYAGKFVSK 60
Query: 94 ADRI--QEGSSFNNLYVKNL 111
DR+ + + Y+KNL
Sbjct: 61 IDRVLPNPDAKYIIFYIKNL 80
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
++ L + + L QIF G +QS K++ + K YGFV+Y P +A A+ L G
Sbjct: 95 YIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMSTLNG 154
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++ +
Sbjct: 155 RRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVM 214
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 215 WDMKTGRSRGYG----FVAFRERPDAEKAL 240
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 185 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMD 244
Query: 77 G 77
G
Sbjct: 245 G 245
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKNL +ID+ +L Q F FG+I S+KV+ +SKG+GFV +S PE A A+ ++
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 76 QGATVERMELYVGPFIRRADR 96
G LYV R+ DR
Sbjct: 61 NGKICGSKPLYVALAQRKEDR 81
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 24/98 (24%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------------ 146
NLYVKNLDD + + L ++F FG ITS + D+N SKGF
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 147 -----GSKVLYVARAQKKAERKAILRAQF-ERMRKERA 178
GSK LYVA AQ+K +RKA L +Q+ +R+ R+
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHRS 98
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V L + L QIF G +QS K++ + + YGFV+Y P +A A++ L G
Sbjct: 96 YVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNHRGYNYGFVEYDDPGAAERAMQTLNG 155
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
V + E+ V + + +E +S + +++V +L +++ +E+L + FS FG I+ +
Sbjct: 156 RRVHQNEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLWQAFSAFGSISEARVM 215
Query: 137 KD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
D G S+G+G +VA ++ KA+
Sbjct: 216 WDMKTGRSRGYG----FVAFRERADAEKAL 241
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG I ++V+ + G+S+GYGFV + A A+ +
Sbjct: 186 FVGDLSNEVNDEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD 245
Query: 77 G 77
G
Sbjct: 246 G 246
>gi|403336206|gb|EJY67291.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 494
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 45/237 (18%)
Query: 15 GNAFVKNLASTIDNLKLHQIFSK-FGD--IQSSKVVVSQEGKSKGYGFVQYSTPESALDA 71
N V+NL +I + +L +IF+K FGD + S+KV ++ + S+GYG V ++ P+ A A
Sbjct: 5 NNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGQVIFACPQLAEQA 64
Query: 72 IEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ A + P+ + DR + SFNN+Y+KN + +E + + F ++G I
Sbjct: 65 L-----AKAGEFNFQISPY-QPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIK 118
Query: 132 SLVISKD-ANGT---------------SKGFGSKV-----------------LYVARA-- 156
S VI GT +K +G K LYV A
Sbjct: 119 STVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALP 178
Query: 157 -QKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
+ + K I + +F+ +K KN D+ E +L+ YF G I S+K+ D
Sbjct: 179 MTLREQEKKIEQNRFKNYKKGCNLYVKNFPDDTTEEQLQAYFENYGEIESIKLNHKD 235
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPES--- 67
N ++KN S + ++ QIF K+G I+S+ + +V + + FV Y PE+
Sbjct: 90 FNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEY 149
Query: 68 ----ALDAIEKLQGATVERMELYVGP----FIRRADRIQEGSSFNN------LYVKNLDD 113
A +AI + +LYV +R ++ E + F N LYVKN D
Sbjct: 150 GPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYKKGCNLYVKNFPD 209
Query: 114 DMTEEILVEKFSEFGKITSLVIS 136
D TEE L F +G+I S+ ++
Sbjct: 210 DTTEEQLQAYFENYGEIESIKLN 232
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKG--YGFVQYSTPESALDAIEKL 75
+V L + L QIF G +QS K++ + +SKG YGFV+Y P +A A++ L
Sbjct: 95 YVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGAAERAMQTL 154
Query: 76 QGATVERMELYVGPFIRRADRIQEGSSFN-NLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
G V + E+ V + + +E +S + +++V +L +++ +E+L++ FS FG ++
Sbjct: 155 NGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEAR 214
Query: 135 ISKD-ANGTSKGFGSKVLYVARAQKKAERKAI 165
+ D G S+G+G +VA ++ KA+
Sbjct: 215 VMWDMKTGRSRGYG----FVAFRERADAEKAL 242
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-QEGKSKGYGFVQYSTPESALDAIEKLQ 76
FV +L++ +++ L Q FS FG + ++V+ + G+S+GYGFV + A A+ +
Sbjct: 187 FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD 246
Query: 77 G 77
G
Sbjct: 247 G 247
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,004,051,285
Number of Sequences: 23463169
Number of extensions: 246793351
Number of successful extensions: 862973
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3894
Number of HSP's successfully gapped in prelim test: 11432
Number of HSP's that attempted gapping in prelim test: 811796
Number of HSP's gapped (non-prelim): 45921
length of query: 398
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 253
effective length of database: 8,957,035,862
effective search space: 2266130073086
effective search space used: 2266130073086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)