BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039806
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 230/455 (50%), Gaps = 84/455 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS +AR +G+GN FVKNL ++ N L +F KFG+I S KV ++GKS+GYGFV
Sbjct: 98 MWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFV 157
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEIL 120
Q+ ++A AI+ L V E+YVG F+++ DR++ + NLY+KNLD D++E++L
Sbjct: 158 QFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLL 217
Query: 121 VEKFSEFGKITSLVISKDANGTSKG-----------------------FGSKVLYVARAQ 157
EKF+EFGKI SL I+KD N +G FGSK LYV RAQ
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Query: 158 KKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
KKAER+ +LR QF+ +E+ + +Y KN+N V E EL+++FSQCGTI+S K+M
Sbjct: 278 KKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMC 337
Query: 211 TDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY---- 238
++G SKG C +AIAQ K +R L++ +
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV 397
Query: 239 --------AKQGPGLASTIF--PVHPTL-YQRALQVYQAPDFRHGGMIPNGFSPPPPSPL 287
A PG + ++ HP + YQ ++++ + G PN + P P+
Sbjct: 398 EARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYPLMWKSANMI-GSSYPNSEAVTYP-PM 455
Query: 288 FLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRA 347
AP Q R ++ +A +P N+ + + P+S+ + Q + G
Sbjct: 456 VANAPSKNRQNRIGKLDRNAVSYVP----NVYQSTQMLPLSRDFSKQQHSRTYGRGKEMK 511
Query: 348 AASNENLSSMLVATSPDERKDILGQRLYPLVKKLK 382
+ + S + +LG+ L+PLV+KL+
Sbjct: 512 KSIQQRQSETV-----GMEMQLLGELLHPLVEKLE 541
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 106/227 (46%), Gaps = 35/227 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQ 76
+V +L ++ L+ F++F + S ++ + G+S YG+ + + + A AIEK
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ + + V +R D + G N++VKNL + +T +L + F +FG I S ++
Sbjct: 87 NSLLNGKMIRVMWSVRAPDARRNG--VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
+G S+G+G K +YV + KK +R +
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--------KP 196
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH 219
++ LY KN++ +V E L++ F++ G I S+ I + + + +G+
Sbjct: 197 EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGY 243
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFG-SKVLYVARAQKKAER 162
+LYV +L +TE IL + F+EF +TS+ + KDA +G S +G + L A E+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 163 K--AILRAQFER-MRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
K ++L + R M RA KN+ + V L+ F + G I S K+
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 210 RTDRGISKGH 219
+ G S+G+
Sbjct: 145 TLEDGKSRGY 154
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 151/272 (55%), Gaps = 32/272 (11%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M+S + R SG GN F+KNL +ID+ LH FS FG+I S KV V G+SKGYGFV
Sbjct: 110 MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFV 169
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR--IQEGSSFNNLYVKNLDDDMTEE 118
QY+ ESA AIEKL G + ++YVGPF+RR +R + F N+YVKNL + T++
Sbjct: 170 QYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD 229
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L F E+GKITS V+ KD G SKGFG K YV R
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 156 AQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSVKI 208
AQKK+ER+ LR ++E+ KE A+ LY KN++ + + +LK+ FS GT++S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 209 MRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
MR G SKG T E T + + K
Sbjct: 350 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 381
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 106/206 (51%), Gaps = 37/206 (17%)
Query: 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP 65
+S A + N +VKNLA + + L F ++G I S+ V+ EGKSKG+GFV +
Sbjct: 206 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265
Query: 66 ESALDAIEKLQGATVERMELYVGPFIRRADRIQE------------GSSF--NNLYVKNL 111
+ A A+E L G + E YVG ++++R E F +NLYVKNL
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 325
Query: 112 DDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------S 148
D +++E L E FS FG +TS + +D NGTSKG G S
Sbjct: 326 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 385
Query: 149 KVLYVARAQKKAERKAILRAQFERMR 174
K LYVA AQ+K +R+ L+AQF ++R
Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVR 411
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 45/232 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALDAIEK 74
+V +L + + +L F + G + + +V +V++ +S GYG+V ++ P+ A AI++
Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTR--RSLGYGYVNFTNPQDAARAIQE 96
Query: 75 LQ-----GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L G + M + P +RR S N+++KNLD+ + + L + FS FG
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR-------SGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR-------------AQFERMRKE 176
I S ++ D++G SKG+G +V A +++ +KAI + F R R+E
Sbjct: 150 IVSCKVAVDSSGQSKGYG----FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-RQE 204
Query: 177 R---------AELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
R +Y KN+ + + +LK F + G I+S +M+ G SKG
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 223/499 (44%), Gaps = 131/499 (26%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L++ FS FG I S KV + G+SKGYGFV
Sbjct: 132 MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMT 116
Q+ E+A AI+KL G + +++VG F+RR DR + S SF N+YVKNL ++T
Sbjct: 192 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 251
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
++ L + F ++G I+S V+ KD +G S+ F G VLYV
Sbjct: 252 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYV 311
Query: 154 ARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK++R+ LR +FE+ R R E LY KN++D V++ +LK+ FS+ G ++S
Sbjct: 312 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 371
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K ER ++L+ ++
Sbjct: 372 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLF 431
Query: 239 AK-QGPGLASTI-----------------FPVHPTLYQR-------------ALQVYQAP 267
+ + PG S + P HP QV P
Sbjct: 432 TQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMP 491
Query: 268 DFRHGGMIPNGFSPPP------PSPLFLMAPDSVTQYRGA-------------------M 302
R G PN P P P P V RGA
Sbjct: 492 GMRPGAGPPNFMMPFPLQRQTQPGP-------RVGFRRGANNMQQQFQQQQMLQQNASRF 544
Query: 303 MNGHANFPMPLMLSNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAA-SNENLSSMLVAT 361
M G N + ++ + I P A ++N +H+ + L+S L
Sbjct: 545 MGGAGN-----RRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALA 599
Query: 362 SPDERKDILGQRLYPLVKK 380
SPD+ +LG LYPLV++
Sbjct: 600 SPDKHPRMLGDHLYPLVEQ 618
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+V +L +++ L +F++ + + +V +S GY +V ++ PE A A+E L
Sbjct: 62 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 121
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
A + + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 122 APIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 179
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + A K + F R R++RA
Sbjct: 180 DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR-RQDRARSESGAVPSF 238
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ + ELK+ F + G ISS +M+ G S+
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 279
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERK 163
++LYV +LD + E L++ F++ + +L + +D S G+ YV A + +
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYA----YVNFANPEDASR 114
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ + +R + KN++ +D L + FS GTI S
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236
K+ G SKG+ Q ++E T+ I
Sbjct: 175 CKVAMDVVGRSKGY--GFVQFEKEETAQAAI 203
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 142/263 (53%), Gaps = 34/263 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH FS FG I S KV V + G +KGYGFV
Sbjct: 154 MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFV 213
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ + ESA AIE + G + ++YVG + R +R + ++F N+Y+KNLD ++T
Sbjct: 214 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ + F +FG+ITSL + KD N +GFG K LYV
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR ++E+M+ E+ Y KN+ DEVD+ LK FS GTI+S
Sbjct: 334 GRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSA 393
Query: 207 KIMRTDRGISKGHCMAIAQTKRE 229
KIM ++G SKG T E
Sbjct: 394 KIMTDEQGKSKGFGFVCYTTPEE 416
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 37/201 (18%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPES 67
EA + N ++KNL + I + +F +FG+I S +V Q K +G+GFV Y+ E
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 313
Query: 68 ALDAIEKLQGATVERMELYVGPFIRRADRIQEG---------SSFN-----NLYVKNLDD 113
A A+++L + +LYVG ++ +R +E N NL++KNL D
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQD 373
Query: 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKV 150
++ +E L +FS FG ITS I D G SKGFG K
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKP 433
Query: 151 LYVARAQKKAERKAILRAQFE 171
LYVA AQ+K R++ L AQ +
Sbjct: 434 LYVALAQRKEVRRSQLEAQIQ 454
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV LD +TE +L E F+ G + S+ + +DA T + G YV + KA
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLG--YAYVNFHNMEDGEKA 137
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ + ++ + KN++ +D L FS G I S
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 207 KIMRTDRGISKGH 219
K+ + G +KG+
Sbjct: 198 KVAVDELGNAKGY 210
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 123 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 182
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D D+T
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE E F +FG+ITS +S+D G S+GFG ++ LYV
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 303 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSA 362
Query: 207 KIMR 210
K+MR
Sbjct: 363 KVMR 366
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A++++
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEM 290
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 351 ELFGPYGTITSAKVMRDTN 369
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 109
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 110 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGN 162
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 163 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 222
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ +V E E ++ F + G I+S + R G S+G
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG 271
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY- 152
+LYV LD +TE +L E FS G++ S+ + +DA N + G + L
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 110 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 169
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 170 QDEFGNSKGY 179
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 465
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 77/367 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGY FV
Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E FS+FGK S+ + +D NG SKGFG K+++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ +FE++++ER Y KN++D +D+ +L++ FS G+I+S
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M D G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Query: 239 AKQGPGLASTIFPVHPTL--YQRALQVYQAPDFRHGGMIPNGFSPPP---PSPLFLMAPD 293
++ G+ + P + L +Q A Y P +P PP P+ L M P+
Sbjct: 383 MQRVAGMRA--LPANAILNQFQPAAGGYFVP------AVPQAQGRPPYYTPNQLAQMRPN 434
Query: 294 SVTQYRG 300
Q G
Sbjct: 435 PRWQQGG 441
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G + S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGHCMAIAQTK 227
K++ + G SKG+ +T+
Sbjct: 129 KVVCDENG-SKGYAFVHFETQ 148
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 556 ASMLAAAPPQEQKQMLGERLFPLIQTM 582
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 169/339 (49%), Gaps = 74/339 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL IDN ++ FS FG+I S KV ++G SKGYGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A +I+K+ G + ++YVG FI R +R +E F N+YVKN +D
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG------------------------SKVLY 152
+E L E F +GKITS + +G SKGFG K LY
Sbjct: 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 153 VARAQKKAERKAILRAQFERMRKERAE------LY-KNINDEVDEIELKQYFSQCGTISS 205
VARAQKKAER+ L+ +FE ++++R E LY KN++D +D+ L+ FS G I+S
Sbjct: 256 VARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITS 315
Query: 206 VKIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIM 237
K+M + G SKG C +A+AQ K ER ++L
Sbjct: 316 AKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ 375
Query: 238 YAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIP 276
Y + G+ Q+ Q+YQ P+ G +P
Sbjct: 376 YMRHMTGMR----------MQQLGQIYQ-PNAASGFFVP 403
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 37/233 (15%)
Query: 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKV---VVSQEGKSKGYGFVQYSTPESALD 70
+ + +V +L ++ L FS G + S +V V+++ +S GY +V + P A
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAER 58
Query: 71 AIEKLQGATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFS 125
A++ + V + + P +RR S N+++KNLD + + + + FS
Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQRDPSLRR-------SGVGNVFIKNLDRAIDNKAIYDTFS 111
Query: 126 EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA---------------ILRAQF 170
FG I S ++ D G SKG+G A + K I R +
Sbjct: 112 AFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
Query: 171 ERMRKERAELY-----KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E+ E+A+L+ KN ++ D+ +LK++F G I+S K+M + G SKG
Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG 224
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 316 SNLQKPSYNYPISQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQRLY 375
SN++ P P+ Q Q L N S + ++S+L P E+K ILG+RLY
Sbjct: 527 SNMRNP----PVPQLHQTQPIPQQLQGKN-----SEKLIASLLANAKPQEQKQILGERLY 577
Query: 376 PLVKKL 381
P+++ +
Sbjct: 578 PMIEHM 583
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 178 bits (452), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 63/307 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
M S + RLSG GN F+KNL ++IDN L + FS FG I S KV + G+SKGYGFV
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSS----FNNLYVKNLDDDMT 116
Q+ ESA AI+KL G + +++VG FIRR +R ++ ++ F N+YVKNL ++
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIG 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVLYV 153
E+ L + F +FG I+S V+ +D +G S+ F G VLYV
Sbjct: 242 EDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK+ER+ LR +FE+ R R A LY KN++D VD+ +LK+ FS+ G ++S
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 207 KIMRTDRGISKGHC----------------------------MAIAQTKRERTSYLRIMY 238
K+M +G+S+G +A+AQ K +R ++L+ ++
Sbjct: 362 KVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALF 421
Query: 239 AK-QGPG 244
++ + PG
Sbjct: 422 SQIRAPG 428
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77
+ +L + L +F ++ S +V Q +S GY ++ +S P A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 78 ATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISK 137
+ + + + D S N+++KNLD + + L E FS FG I S ++
Sbjct: 112 TPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 138 DANGTSKGFGSKVLYVARAQKKA---------ERKAILRAQFERMRKERAE--------- 179
D G SKG+G + + A K + F R R+ERA
Sbjct: 170 DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-RQERARDENTPTPRF 228
Query: 180 ---LYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
KN+ E+ E EL++ F + G ISS +MR G S+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 125 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D D+T
Sbjct: 185 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +FG+ITS +S+D G S+GFG ++ LYV
Sbjct: 245 EEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 305 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSA 364
Query: 207 KIMR 210
K+MR
Sbjct: 365 KVMR 368
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + +IF +FG+I S+ + EGKS+G+GFV YST ESA A++++
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEM 292
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 122 EKFSEFGKITSLVISKDA 139
E F +G ITS + +D+
Sbjct: 353 ELFGPYGTITSAKVMRDS 370
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 54 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 111
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 112 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGN 164
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 165 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 224
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRE 229
+ M+ +Y KNI+ +V E E ++ F Q G I+S + R G S+G T
Sbjct: 225 DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHES 284
Query: 230 RTSYLRIMYAKQ 241
+ + M+ K+
Sbjct: 285 AQAAVDEMHDKE 296
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY- 152
+LYV LD +TE +L E FS G++ S+ + +DA N + G + L
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 112 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 171
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 172 QDEFGNSKGY 181
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 425 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 460
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FGDI SSK+ + GKSKG+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEGSS-FNNLYVKNLDDDMT 116
+ +A +AI+ L G + E+YV P + R +R ++E + + NLYVKN++ + T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG I S + KDA+G KGFG + LYV
Sbjct: 232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER +L+ Q+E R E+ Y KN++D VD+ +L++ F+ GTI+S
Sbjct: 292 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MRT+ G SKG T E T
Sbjct: 352 KVMRTENGKSKGFGFVCFSTPEEAT 376
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ S + + ++F+KFG I S+ + +GK KG+GFV Y E A+ A+E L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ + +LYVG ++ A R+++ + + NL+VKNLDD + +E L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + + NG SKGFG K LYVA AQ+
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 400 KDVRRSQLAQQIQ 412
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQ 61
S NS A L +V +L ++ L+ IFS G + S +V K S GY +V
Sbjct: 32 SVENSSASL------YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 62 YSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116
++ E+ AIE+L +G M P +R+ +GS N+++KNL D+
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK-----KGSG--NIFIKNLHPDID 138
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ L + FS FG I S I+ D NG SKGFG + +YV
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTD 212
A + ER +Q E + LY KNIN E + + ++ F++ G I S + +
Sbjct: 199 APHLSRKERD----SQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 213 RGISKG 218
G KG
Sbjct: 255 DGKLKG 260
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL ++D+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVR 403
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 218/491 (44%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPV----------------HPTLYQRA--------LQVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGF----------SPPPP----SPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK 320
P+ F +P PP P P ++ R A + P P +
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAAT 502
Query: 321 PS------YNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P+ Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 188
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+YVKN+D D T
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 248
Query: 117 EEILVEKFSEFGKITSLVISKDA-NGTSKGFG-----------------------SKVLY 152
EE + F +FG+ITS +++DA +G S+GFG + LY
Sbjct: 249 EEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLY 308
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR Q+E R E+A Y KN++D++D+ +L++ FS GTI+S
Sbjct: 309 VGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITS 368
Query: 206 VKIMR 210
K+MR
Sbjct: 369 AKVMR 373
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 15/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + +F KFG+I S+ + E GKS+G+GFV +++ ++A A+E
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 75 LQGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEIL 120
L + +LYVG ++ A RI++ S + NLY+KNL DD+ +E L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 121 VEKFSEFGKITSLVISKD 138
E FS +G ITS + +D
Sbjct: 357 RELFSSYGTITSAKVMRD 374
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY-V 153
LYV LD +TE +L E FS G++ S+ + +DA N + G + L +
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 154 ARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIMR 210
K I+ +Q + ++ + KN++ +D L F+ G I S K+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ 176
Query: 211 TDRGISKGH 219
+ G SKG+
Sbjct: 177 DEFGNSKGY 185
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYV 465
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 145/271 (53%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 141 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFV 200
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG + + DR ++E +++ N+YVKN+D T
Sbjct: 201 HYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYT 260
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ E F+ FGKITS+ + KDA G SKGFG + +YV
Sbjct: 261 EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYV 320
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN+++++D +L++ F GTI+S
Sbjct: 321 GRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSS 380
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M D G SKG T E T + M
Sbjct: 381 KVMVDDAGKSKGFGFVCFSTPEEATKAITEM 411
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 114/276 (41%), Gaps = 63/276 (22%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 70 YVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSK--KSLGYAYVNYHKLEDGEKAIEE 127
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L VE + + D S N+++KNL + + L + FS FGKI S+
Sbjct: 128 LNYTPVEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + +YV + K +R++ L E
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL----E 241
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------HCMA 222
M+ +Y KNI+ E E ++ F+ G I+S+ + + G SKG H A
Sbjct: 242 EMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAA 301
Query: 223 I--------------------AQTKRERTSYLRIMY 238
AQ KRERT L+ Y
Sbjct: 302 AKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQY 337
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 214/491 (43%), Gaps = 112/491 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AIEK+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQGPGLASTIFPVH----------------PTLYQRAL--------QVYQAPDFRHGGM 274
++ + + PV P RA Q+ +P + G
Sbjct: 383 MQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGA 442
Query: 275 IPNGFS-------PPPPSPLF-LMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P+ F P P P F M P S R AN M
Sbjct: 443 RPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAAT 502
Query: 321 ------PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDIL 370
P Y Y + P+ A +T + +SML + P E+K +L
Sbjct: 503 PAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQML 562
Query: 371 GQRLYPLVKKL 381
G+RL+PL++ +
Sbjct: 563 GERLFPLIQAM 573
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 144/268 (53%), Gaps = 34/268 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN LH+ FS FG++ S KV + + G S+G+GFV
Sbjct: 124 MWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFV 183
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRI----QEGSSFNNLYVKNLDDDMT 116
+ A DAIE + G + +E+YV + + DRI + ++F N+YVKN+D + T
Sbjct: 184 HFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETT 243
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + FS++G+I S + KDA G KGFG S+ LYV
Sbjct: 244 DEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E+ R E+ + KN++D +D+ +LK+ F+ GTI+S
Sbjct: 304 GRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSA 363
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL 234
++MR G SKG + E T +
Sbjct: 364 RVMRDQEGNSKGFGFVCFSSPEEATKAM 391
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + Q+FS++G+I S+ + EGK KG+GFV + +A A+E+L
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEEL 291
Query: 76 QGATVERMELYVGPFIRRADRIQEG------------SSFN--NLYVKNLDDDMTEEILV 121
G + LYVG ++ +R +E + F NL++KNLDD + +E L
Sbjct: 292 NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLK 351
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + +D G SKGFG K LYVA AQ+
Sbjct: 352 EEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Query: 159 KAERKAILRAQFE 171
K R++ L Q +
Sbjct: 412 KDVRRSQLAQQIQ 424
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQ 76
+V L I L+ +FS G I S +V K S GY +V Y+ E+ AI++L
Sbjct: 53 YVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELN 112
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
A + + P IR+ +GS N+++KNL + + L E FS FG++
Sbjct: 113 YAEINGRPCRIMWSERDPAIRK-----KGSG--NIFIKNLHPAIDNKALHETFSTFGEVL 165
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D NG S+GFG +YVA K +R + L
Sbjct: 166 SCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL-- 223
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E + +Y KNI+ E + E +Q FSQ G I S + + G KG
Sbjct: 224 --EEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKG 272
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N F+KNL +ID+ KL + F+ +G I S++V+ QEG SKG+GFV +S+PE A
Sbjct: 329 AKFQGV-NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEA 387
Query: 69 LDAIEKLQGATVERMELYV 87
A+ + V LYV
Sbjct: 388 TKAMTEKNQQIVAGKPLYV 406
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKA 164
LYV LD ++TE +L + FS G I+S+ + +DA S G+ YV +A +KA
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYA----YVNYTDYEAGKKA 107
Query: 165 ILRAQFER--------MRKERAE----------LYKNINDEVDEIELKQYFSQCGTISSV 206
I + M ER KN++ +D L + FS G + S
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 207 KIMRTDRGISKG 218
K+ + G S+G
Sbjct: 168 KVALDENGNSRG 179
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 306 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSA 365
Query: 207 KIMR 210
K+MR
Sbjct: 366 KVMR 369
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++F KFG+I S+ + QEGKS+G+GFV +ST +SA A++++
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 122 EKFSEFGKITSLVISKD 138
E FS FG ITS + +D
Sbjct: 354 ELFSPFGTITSAKVMRD 370
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 55 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ EV + E ++ F + G I+S + R G S+G
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG 274
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 45/117 (38%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKV----VVSQE-------------------- 51
N +VKNL +D+ KL ++FS FG I S+KV V + E
Sbjct: 337 NLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEE 396
Query: 52 ---------------------GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 397 KTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 453
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY- 152
+LYV LD +TE +L E FS G++ S+ + +DA N + G + L
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA 172
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 173 QDEFGNSKGY 182
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 126 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++T
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ FS GTI+S
Sbjct: 306 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSA 365
Query: 207 KIMR 210
K+MR
Sbjct: 366 KVMR 369
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++F KFG+I S+ + QEGKS+G+GFV +ST +SA A++++
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
++ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 122 EKFSEFGKITSLVISKD 138
E FS FG ITS + +D
Sbjct: 354 ELFSPFGTITSAKVMRD 370
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L+++FS G + S +V V++ +S GY +V Y+ A+E
Sbjct: 55 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERALED 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 130 ITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQF 170
I S +++D G SKG+G A A A ++K + +++F
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 171 ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
E M+ +Y KNI+ EV + E ++ F + G I+S + R G S+G
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG 274
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 47/119 (39%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKV----VVSQE-------------------- 51
N +VKNL +D+ KL ++FS FG I S+KV V + E
Sbjct: 337 NLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEG 396
Query: 52 -----------------------GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 397 EEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 455
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY- 152
+LYV LD +TE +L E FS G++ S+ + +DA N + G + L
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA 172
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 173 QDEFGNSKGY 182
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD +++
Sbjct: 182 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +FG+ITS +S+D G S+GFG + LYV
Sbjct: 242 EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSA 361
Query: 207 KIMR 210
K+MR
Sbjct: 362 KVMR 365
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLY- 152
+LYV LD +TE +L E FS G++ S+ + +DA N + G + L
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDEFGNSKGY 178
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ + LYV
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYV 455
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 116 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV 175
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KN+D ++
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F +FG+ITS +S+D+ G S+GFG S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D+VD+ +L++ F GTI+S
Sbjct: 296 GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSA 355
Query: 207 KIMR 210
K+MR
Sbjct: 356 KVMR 359
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ +++ + ++F KFG+I S+ + EGKS+G+GFV +ST ESA A+E++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
V +LYVG ++ A R+++ S + NLYVKNL DD+ ++ L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 122 EKFSEFGKITSLVISKD 138
E F +G ITS + +D
Sbjct: 344 ELFGPYGTITSAKVMRD 360
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTP---ESALDAIE 73
+V L ++ L+++FS G + S +V +S GY +V Y+ E ALD +
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELN 104
Query: 74 K--LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
++G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 105 YTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 132 SLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAIL---------RAQFER 172
S +++D G SKG+G A A A ++K + +++FE
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 173 MRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
M+ +Y KNI+ EV++ E ++ F + G I+S + R G S+G
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS G++ S+ + +DA N G + L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 103 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 210 RTDRGISKGH 219
+ + G+SKG+
Sbjct: 163 QDEFGVSKGY 172
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 51/123 (41%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQS------------------SKVVVSQE------ 51
N +VKNL +D+ KL ++F +G I S +K ++E
Sbjct: 327 NLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAE 386
Query: 52 ---------------------------GKSKGYGFVQYSTPESALDAIEKLQGATVERME 84
GKSKG+GFV +S+P+ A A+ ++ V
Sbjct: 387 GEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKP 446
Query: 85 LYV 87
LYV
Sbjct: 447 LYV 449
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL S IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 128 MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFV 187
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + DR + ++F N+Y+KNLD ++
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F +FG+ITS +S+D G S+GFG S+ LYV
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+A Y KN+ D++D+ +L++ F GTI+S
Sbjct: 308 GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSA 367
Query: 207 KIMR 210
K+MR
Sbjct: 368 KVMR 371
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 14/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KNL S ID+ + ++F KFG+I S+ + QEGKS+G+GFV +ST ESA A+E++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
+ +LYVG ++ A R+++ S + NLYVKNL DD+ +E L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 122 EKFSEFGKITSLVISKDAN 140
E F +G ITS + +D N
Sbjct: 356 ELFGPYGTITSAKVMRDTN 374
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 45/248 (18%)
Query: 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGF 59
STP A + +V L ++ L+++FS G + S +V V++ +S GY +
Sbjct: 42 STPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 99
Query: 60 VQYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDD 114
V Y+ A+E L +G M P +R+ + N+++KNLD
Sbjct: 100 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDSA 152
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ + L + F+ FG I S +++D G SKG+G K +
Sbjct: 153 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 212
Query: 152 YVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMR 210
+V K +R++ +FE M+ +Y KN++ E+D+ E ++ F + G I+S + R
Sbjct: 213 FVGHHISKKDRQS----KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 211 TDRGISKG 218
G S+G
Sbjct: 269 DQEGKSRG 276
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 52 GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S+P+ A A+ ++ V LYV
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 467
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 214/495 (43%), Gaps = 122/495 (24%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D +G S+GFG K ++V
Sbjct: 204 DERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ F+ G+I+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLRIMY 238
K+M + G SKG C +A+AQ K ER ++L Y
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Query: 239 AKQ--------------GPGLASTIFPVHPTLYQRA--------LQVYQAPDFRHGGMIP 276
++ P +S P RA Q+ +P + G P
Sbjct: 383 MQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARP 442
Query: 277 NGF---------SPPPPSPLFLMAPDS-----VTQYRGAMMNGHANFPMPLMLSNLQK-- 320
+ F S P P M P S ++ R A + P P +
Sbjct: 443 HPFQNMAGAIRPSAPRPPTFSTMRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSA 502
Query: 321 ----PSYNYPI----------SQPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDER 366
P Y Y +QP+ G A SML A P E+
Sbjct: 503 VRTVPQYKYAAGVRNTQQHLNTQPQVAMQQPAVHVQGQEPLTA------SMLAAAPPQEQ 556
Query: 367 KDILGQRLYPLVKKL 381
K +LG+RL+PL++ +
Sbjct: 557 KQMLGERLFPLIQAM 571
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 134 MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFV 193
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN+++++T
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F++FG++TS +++D G S+GFG + LYV
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D+VD+ +L+ FS+ G I+S
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSA 373
Query: 207 KIMR 210
K+MR
Sbjct: 374 KVMR 377
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + + + + ++F+KFG++ SS + QEGKS+G+GFV ++T E+A A+++L
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLR 361
Query: 122 EKFSEFGKITSLVISKDA 139
FSE+G ITS + +D+
Sbjct: 362 AMFSEYGPITSAKVMRDS 379
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++ L ++FS+ G + S +V V++ +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTADGEKALEE 120
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P +R+ + N+++KNLD + + L + F+ FG
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRK-------TGAGNIFIKNLDAAIDNKALHDTFAAFGN 173
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S +++D +G SKG+G K +YV K +R++
Sbjct: 174 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS-- 231
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN+EV + E ++ F++ G ++S + R G S+G
Sbjct: 232 --KFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRG 282
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 153 VARAQKKAERKAILRAQFE-RMRKERAE--LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + +RK A KN++ +D L F+ G I S K+
Sbjct: 121 LNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVA 180
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 181 QDEHGNSKGY 190
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 41/113 (36%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-------------------------- 49
N ++KNL +D+ KL +FS++G I S+KV+
Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEE 404
Query: 50 ---------------QEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
+ GKSKG+GFV +S P+ A A+ ++ V+ LYV
Sbjct: 405 QNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYV 457
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 169/344 (49%), Gaps = 52/344 (15%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN DDM
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L E F ++G S+ + D NG SKGFG K ++V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ +FE+M+++R Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRALQ---- 262
K+M + G SKG + E T + M G P++ L QR +
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVALAQRKEERQAH 377
Query: 263 -----VYQAPDFRHGGMIPNGFSPPPPSPLFLMAPDSVTQYRGA 301
+ + R + N + PPP S + MA Q R A
Sbjct: 378 LTNQYMQRMASVRVPNPVINPYQPPPSS--YFMAAIPPAQNRAA 419
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA 164
+LYV +L D+TE +L EKFS G I S+ + +D T + G YV Q +A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLG--YAYVNFQQPADAERA 68
Query: 165 ILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSV 206
+ F+ ++ + KN++ +D L FS G I S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 207 KIMRTDRGISKGH 219
K++ + G SKG+
Sbjct: 129 KVVCDENG-SKGY 140
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 355 SSMLVATSPDERKDILGQRLYPLVKKL 381
+SML A P E+K +LG+RL+PL++ +
Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAM 571
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 222/488 (45%), Gaps = 109/488 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FGDI S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D +G S+GFG +++YV
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITST 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLR--- 235
K+M T+ G SKG C +A+AQ K ER + L
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 236 -----IMYAKQGPGLASTIFPVH---PTLYQRALQVYQAPD----FRHGGMIPNGFSPP- 282
M A GP L S P + PT+ Q + + + +P+ R + S P
Sbjct: 383 MQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPVRPAPQWASHQSRPP 442
Query: 283 ---PPSPLF-LMAPDSVTQYRGAMMNGHANFP-MPLM---LSNL---------------- 318
PP+PL + P + M P +PL ++N+
Sbjct: 443 QYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIM 502
Query: 319 -QKPSYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDILGQR 373
P Y Y QP A + +S+L A E+K ILG+R
Sbjct: 503 RAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQILGER 562
Query: 374 LYPLVKKL 381
+YPL+ ++
Sbjct: 563 IYPLIHEM 570
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQKKAERK 163
+LY+ +L D+TE +L EKFS G I S+ + +D A S G+ Y+ Q +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYA----YINFQQPADAER 67
Query: 164 AILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISS 205
A+ FE ++ + KN++D +D L FS G I S
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K++ + G S+G+ +T+ ++ M
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTM 158
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 201/451 (44%), Gaps = 90/451 (19%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL ID+ L+ FS FG+I S KVV SKG+GFV
Sbjct: 84 MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEI 119
Y T ESA AI K+ G + +++VGPF +R Q F N++ KNL +D+ +
Sbjct: 144 HYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQ 203
Query: 120 LVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARA 156
L E ++G+IT++ I D G SKGFG K +Y RA
Sbjct: 204 LKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRA 263
Query: 157 QKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG- 214
QKK ER+A L+ FE + + LY KNI+D +D +L++ FSQ GTI+S +M+ D+
Sbjct: 264 QKKIEREAELKHTFE-TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKAT 322
Query: 215 ISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA------LQVYQAPD 268
SKG E T + M G P++ L QR L++
Sbjct: 323 TSKGFGFVCYTAPDEATRAVTEMN-----GRMIGTKPLYVALAQRKDIRRAQLEMQHQQK 377
Query: 269 FRHG---------GMIPNGFSPPPPSPLFL---MAPDSVTQYRGAMMNGHANFPMPLMLS 316
F+ G G P F+P P +P + M P R NG P+ +
Sbjct: 378 FKTGIRQQMPPTYGSGPVFFTPAPVNPQVVYQQMMP------RPRNWNGQ-----PVGVP 426
Query: 317 NLQKPSYNYPISQPRAG---QAAANNLTNG-----------------------NHRAAAS 350
Q + NY QPR Q NG +AA+S
Sbjct: 427 QGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPVQQQTTLDVAQTQQAASS 486
Query: 351 NE---NLSSMLVATSPDERKDILGQRLYPLV 378
E NL S++ S D++ LG+ LYPL+
Sbjct: 487 AESALNLQSIINLPSRDQQNVALGEHLYPLI 517
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 215/491 (43%), Gaps = 115/491 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D G S+GFG +++YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE++++ER Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYLR--- 235
K+M T+ G SKG C +A+AQ K ER + L
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Query: 236 -----IMYAKQGPGL------ASTIFPVHPTLYQRAL-------QVYQAPDFRHGGMIPN 277
M A GP L A+ P P R V QAP + P
Sbjct: 383 MQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPP 442
Query: 278 GFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMPLMLSNLQK----------------- 320
+ PP+PL P + M A+ +P + + Q+
Sbjct: 443 QYQ--PPAPLMRAVPPRRMSSNISTMK-QASTQVPRVAPHSQRVANIGTQTAGARAQVNP 499
Query: 321 ------PSYNYPIS----QPRAGQAAANNLTNGNHRAAASNENLSSMLVATSPDERKDIL 370
P Y Y + QP + +S L + P E+K +L
Sbjct: 500 SIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTASSLASAPPQEQKQML 559
Query: 371 GQRLYPLVKKL 381
G+RLYPL+ ++
Sbjct: 560 GERLYPLIHEM 570
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LYV +L D+TE +L EKFS G I S+ + +D A S G+ Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN+++ +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
G I S K++ + G S+G+ +T+ ++ M
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTM 158
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 141/265 (53%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN ++KNL IDN LH+ FS FG+I S KV + G S+G+GFV
Sbjct: 112 MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFV 171
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQE-GSSFNNLYVKNLDDDMT 116
+ A DAIE + G + E+YV + + DR ++E + F N+YVKN+D + +
Sbjct: 172 HFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETS 231
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F ++GKITS V+ KD+ G +GFG + LYV
Sbjct: 232 QEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D+ +LK+ F+ GTI+S
Sbjct: 292 GRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSA 351
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+MR + G S+G T E T
Sbjct: 352 KVMRDETGNSRGFGFVCFSTPEEAT 376
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN+ + ++F K+G I S+ + EGK +G+GFV + +A A+++L
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 76 QGATVERMELYVGPFIRRADRIQE--------------GSSFNNLYVKNLDDDMTEEILV 121
+ +LYVG ++ +R+QE NL+VKNLDD + +E L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS + +D G S+GFG K LYVA AQ+
Sbjct: 340 EEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 159 KAERKAILRAQFE 171
K R+ L Q +
Sbjct: 400 KEVRRNQLAQQIQ 412
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L T+ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLN 100
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
++ + R ++GS N+Y+KNL + + L E FS FG I S ++
Sbjct: 101 YTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D NG S+GFG + +YVA K +R++ L E +
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKL----EEV 214
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ + +Y KNI+ E + E ++ F + G I+S + + G +G
Sbjct: 215 KAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG 260
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N FVKNL +ID+ KL + F+ FG I S+KV+ + G S+G+GFV +STPE A
Sbjct: 317 AKYQGV-NLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEA 375
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKEVR 403
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 82 RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-N 140
++E P ++ + +S +LYV L+ ++E +L + FS G ++S+ + +DA
Sbjct: 16 KIEEQTAPTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAIT 75
Query: 141 GTSKGFGSKVLYVARAQKKAERKAILRAQFERM-----------------RKERAELY-K 182
TS G+ YV +A KAI + + + +K +Y K
Sbjct: 76 NTSLGYA----YVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIK 131
Query: 183 NINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
N++ +D L + FS G I S K+ + G+S+G
Sbjct: 132 NLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRG 167
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 206/448 (45%), Gaps = 81/448 (18%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV G+SK +GFV
Sbjct: 126 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D + +
Sbjct: 186 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYS 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE L + F+ +G ITS+ + KDA G SKGFG + +YV
Sbjct: 246 EEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 306 GRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
++M + G SKG + E T + M + G P++ L QR Q
Sbjct: 366 RVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGK-----PLYVALAQRKDVRRSQ 420
Query: 263 VYQAPDFRH---------GGMIPNGFSPP---------PP-----SPLFLMAPDSVTQYR 299
+ Q R+ G IP F PP PP +P P + + R
Sbjct: 421 LEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMR-R 479
Query: 300 GAMMNGHANFPMPLMLSNLQK-PSYNYPISQPRA-----GQAAANN---LTNGNHRAAAS 350
G G +P P N Q P Y P P+A GQ N N
Sbjct: 480 GQPFGGPEQWPRP--GPNGQPVPVYGIP---PQAYSDFNGQNIRQQRGYYPNRNQNKGRQ 534
Query: 351 NENLSSMLVATSPDERKDILGQRLYPLV 378
+L++++ + PD++K ILG+ LYP +
Sbjct: 535 QRDLAAIIASAPPDQQKRILGEELYPKI 562
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L ++++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKMEDGEKAIEE 112
Query: 75 LQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134
L + +E + + D S N+++KNL + + L + FS FGKI S
Sbjct: 113 LNYSPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 135 ISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFE 171
++ D G SK FG + ++V + K +R+ ++FE
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE----SKFE 226
Query: 172 RMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++ +Y KNI+ E E +LK+ F+ G I+S+ + + G SKG
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKG 274
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYV 153
AD S +LYV L+ + E L E FS G+++S+ + +DA + K G YV
Sbjct: 42 ADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAV-SKKSLG--YAYV 98
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQ 195
+ + KAI + + + KN++ +D L
Sbjct: 99 NYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHD 158
Query: 196 YFSQCGTISSVKIMRTDRGISK 217
FS G I S K+ D G SK
Sbjct: 159 TFSTFGKILSCKVATDDMGQSK 180
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 144/265 (54%), Gaps = 34/265 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R G GN F+KNL IDN L+ FS FG+I SSKV + GKSKG+G+V
Sbjct: 109 MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYV 168
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ ESA +AI+ L G + E+YVGP + + +R + ++F N+Y+KN++ + T
Sbjct: 169 HFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETT 228
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ E ++FGK S+V+ + G +KGFG + LYV
Sbjct: 229 DKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYV 288
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ Q+E R E+ Y KN++D +D+ +L++ F+ GTI+S
Sbjct: 289 NRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSA 348
Query: 207 KIMRTDRGISKGHCMAIAQTKRERT 231
K+M T+ G SKG T E T
Sbjct: 349 KVMTTENGKSKGFGFVCFSTPEEAT 373
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N ++KN+ + + + ++ +KFG S + + EG++KG+GFV + E A+ +E+L
Sbjct: 217 NVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEEL 276
Query: 76 QGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEILV 121
+ LYV ++ +R QE + + NL++KNLDD + ++ L
Sbjct: 277 NNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLE 336
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ +G ITS + NG SKGFG K LYVA AQ+
Sbjct: 337 EEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 396
Query: 159 KAERKAILRAQFERMRKER 177
K R++ L Q + + R
Sbjct: 397 KDVRRSQLAQQIQARNQMR 415
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKL- 75
+V +L ++ L+ IFS G + S +V K S GY +V ++ ++A AIEKL
Sbjct: 38 YVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLN 97
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ N+++KNL D+ + L + FS FG I
Sbjct: 98 FTPIKGKLCRIMWSQRDPSLRK-------KGAGNIFIKNLHPDIDNKALYDTFSVFGNIL 150
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SKGFG + +YV K ER+ +
Sbjct: 151 SSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERE----S 206
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNIN E + E ++ ++ G SV + RT G +KG
Sbjct: 207 KFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKG 257
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ GI N F+KNL +ID+ KL + F+ +G I S+KV+ ++ GKSKG+GFV +STPE A
Sbjct: 314 AKYQGI-NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEA 372
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADR 96
AI + V LYV R+ R
Sbjct: 373 TKAITEKNQQIVAGKPLYVAIAQRKDVR 400
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 31/148 (20%)
Query: 98 QEGSSFNN--------LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGS 148
QEG++ N LYV +LD ++E L + FS G ++S+ + +DA TS G+
Sbjct: 21 QEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYA- 79
Query: 149 KVLYVARAQKKAERKAILRAQFE----------------RMRKERAE--LYKNINDEVDE 190
YV A + AI + F +RK+ A KN++ ++D
Sbjct: 80 ---YVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDN 136
Query: 191 IELKQYFSQCGTISSVKIMRTDRGISKG 218
L FS G I S K+ + G SKG
Sbjct: 137 KALYDTFSVFGNILSSKVATDETGKSKG 164
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS ++ R SGIGN F+KNL +IDN L++ FS FG I SSKV+ +G SKGY FV
Sbjct: 84 MWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFV 142
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ +A AIE++ G ++ +++VG F R DR E S F N+Y+KN DM
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + FS++GK S+ + D++G SKGFG ++++V
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+A L+ FE++++ER +LY KN++D +D+ +L+ FS G+IS V
Sbjct: 263 GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 322
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M+ + G SKG + + + T + M G L S P+ L QR
Sbjct: 323 KVMQ-EEGQSKGFGLICFSSPEDAT---KAMTEMNGRILGSK--PLSIALAQR 369
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---SKVLYVARAQKKAE 161
+LYV +L D+TE++L KFS G + S+ I +D T + G L +A AQK +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRD-QVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 RK--AILRAQFERMRKERAELY-----------KNINDEVDEIELKQYFSQCGTISSVKI 208
I++ + R+ + + Y KN++ +D L ++FS G I S K+
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 209 MRTDRGISKGH 219
M D+G SKG+
Sbjct: 130 MSDDQG-SKGY 139
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 34/243 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 122 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFV 181
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A +AI+ + G + +++VG I + +R+ + ++F N+YVKN+D D+T
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 241
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E E F + G ITS I++D G S+GFG + LYV
Sbjct: 242 DEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYV 301
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR Q+E R E+ Y KN+ND+VD+ +L+ F+ GTI+S
Sbjct: 302 GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSA 361
Query: 207 KIM 209
K++
Sbjct: 362 KVI 364
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 35/243 (14%)
Query: 4 TPNSEARLSGIGNA--FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV 60
TP + A+ + +A +V L ++ L ++FS G + S +V +S GY +V
Sbjct: 35 TPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 94
Query: 61 QYSTPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDM 115
Y++ E A+E+L +G M P +R+ + N+++KNLD +
Sbjct: 95 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQ-------GNVFIKNLDHAI 147
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKA----------ERKAI 165
+ L + F+ FG I S +++D G SKG+G A A A E+K
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVF 207
Query: 166 L---------RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGI 215
+ ++FE M+ +Y KNI+ +V + + ++ F + G I+S I R D+G
Sbjct: 208 VGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGK 267
Query: 216 SKG 218
S+G
Sbjct: 268 SRG 270
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-- 151
+LYV LD +TE +L E FS G++ S+ + +DA N S G K L
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 152 --YVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209
Y K R R + KN++ +D L F+ G I S K+
Sbjct: 109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA 168
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 169 QDELGNSKGY 178
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 54/142 (38%)
Query: 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSK---------------------- 45
+++ G+ N ++KNL +D+ KL +F+ FG I S+K
Sbjct: 326 QSKYQGV-NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKE 384
Query: 46 ---------------------------VVVSQE----GKSKGYGFVQYSTPESALDAIEK 74
V + E GKSKG+GFV +S P+ A A+ +
Sbjct: 385 DEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTE 444
Query: 75 LQGATVERMELYVGPFIRRADR 96
+ +E LYV R+ R
Sbjct: 445 MNQKMIEGKPLYVALAQRKDVR 466
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 205/458 (44%), Gaps = 98/458 (21%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + AR SG GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 126 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFV 185
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG I + DR + ++F N+YVKN+D + +
Sbjct: 186 HYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYS 245
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + FS FGKITS+ + KD +G SKGFG + +YV
Sbjct: 246 EESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYV 305
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E +R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 306 GRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQRA----LQ 262
K+M + G SKG T E T + M + G P++ L QR Q
Sbjct: 366 KVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYVALAQRKDVRRSQ 420
Query: 263 VYQAPDFRH--------GGMIPNGFSPPPPSPLFLMAPDSVTQYRGAMMNGHANFPMP-- 312
+ Q R+ G +P F P P+F Q NG N P P
Sbjct: 421 LEQQIQARNQMRMQNAAAGGLPGQFIP----PMFY------GQQGFFPPNGRGNAPYPGP 470
Query: 313 ---LMLSNLQKPSYNYPISQPRAGQAAA-----------NNLTNGN-------------- 344
+M+ +P +P PR G NG
Sbjct: 471 NPQMMMRGRGQP---FPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQQPRG 527
Query: 345 ----HRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
+R S +L++++ + D++K ILG+ LYP +
Sbjct: 528 GYYPNRNQTSKRDLAAIISSVPQDQQKRILGEELYPKI 565
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 45/233 (19%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVV---VSQEGKSKGYGFVQYSTPESALDAIEK 74
+V L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 112
Query: 75 L-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129
L +G M P RR S N+++KNL + + L + FS FGK
Sbjct: 113 LNYNPIEGRPCRIMWSQRDPSARR-------SGDGNIFIKNLHPAIDNKALHDTFSAFGK 165
Query: 130 ITSLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAIL 166
I S ++ D G SK FG + ++V + K +R+
Sbjct: 166 ILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE--- 222
Query: 167 RAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
++FE M+ +Y KNI+ E ++ FS G I+S+ + + G SKG
Sbjct: 223 -SKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKG 274
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 106 LYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165
LYV L+ + E L E FS G+++S+ + +DA + K G YV + + KAI
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAV-SKKSLG--YAYVNYHKYEDGEKAI 110
Query: 166 LRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCGTISSVK 207
+ + + KN++ +D L FS G I S K
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 208 IMRTDRGISK 217
+ + G SK
Sbjct: 171 VATDEFGQSK 180
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 137/245 (55%), Gaps = 35/245 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 135 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 194
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I + DR + ++F N+YVKN++ ++T
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 117 EEILVEKFSEFGKITSLVISKD-ANGTSKGFG-----------------------SKVLY 152
++ F ++G +TS +++D G S+GFG + LY
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLY 314
Query: 153 VARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER+ LR +E R+E+A Y KN++DEVD+ +L+Q FS+ G I+S
Sbjct: 315 VGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITS 374
Query: 206 VKIMR 210
K+MR
Sbjct: 375 AKVMR 379
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 15/139 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE-GKSKGYGFVQYSTPESALDAIEK 74
N +VKN+ + + + +F K+GD+ SS + QE GKS+G+GFV +++ E A A+++
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 75 LQGATVERMELYVGPFIRRADRIQE------------GSSFN--NLYVKNLDDDMTEEIL 120
L LYVG ++ +R +E S + NLY+KNLDD++ +E L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 121 VEKFSEFGKITSLVISKDA 139
+ FSEFG ITS + +D+
Sbjct: 363 RQLFSEFGPITSAKVMRDS 381
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 42/232 (18%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL- 75
+V L ++ L ++FS+ G + S +V +S GY +V Y+T A+E+L
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELN 123
Query: 76 ----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+G M P +R+ + N+++KNLD + + L + F+ FG I
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S +++D NG SKG+G K +YV K +R+ +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----S 232
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKG 218
+F+ M+ +Y KNIN EV + E + F + G ++S + R + G S+G
Sbjct: 233 KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRG 284
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +DA N + G K L
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 182 QDENGNSKGY 191
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 47/119 (39%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV---------------------------- 47
N ++KNL +D+ KL Q+FS+FG I S+KV+
Sbjct: 347 NLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPE 406
Query: 48 ---------VSQEGKSKG----------YGFVQYSTPESALDAIEKLQGATVERMELYV 87
+EG+ +GFV ++ P+ A A+ ++ V LYV
Sbjct: 407 EKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYV 465
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FGDI S KV + GKS+G+ FV
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YST E+A AI+ + G + ++YVG + + +R+ + + F N+Y+KN+D ++T
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ + FG S+ +S+D G SKGFG K LY
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYA 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K+ER+A L+ E R E LY KN++DE D+ L+ F GTI+S
Sbjct: 300 GRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSS 359
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D G+S+G + E T + M K
Sbjct: 360 KVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 393
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E F+ G + S+ + +DA N + G + L +
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 107 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVG 166
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 167 TDENGKSRG 175
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 34/274 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL +IDN LH F+ FGDI S KV + GKS+G+ FV
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
YST E+A AI+ + G + ++YVG + + +R+ + + F N+Y+KN+D ++T
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+ + FG S+ +S+D G SKGFG K LY
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYA 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
RAQ K+ER+A L+ E R E LY KN++DE D+ L+ F GTI+S
Sbjct: 300 GRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSS 359
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240
K+MR D G+S+G + E T + M K
Sbjct: 360 KVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 393
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E F+ G + S+ + +DA N + G + L +
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ + K + I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 107 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVG 166
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 167 TDENGKSRG 175
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 34/244 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG+I S KV + G SKGYGFV
Sbjct: 139 MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFV 198
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AI+ + + ++YVG I + DR + ++F N+YVKN+ + T
Sbjct: 199 HYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEAT 258
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E + F+++G +TS +++D+ G S+GFG + LYV
Sbjct: 259 DEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYV 318
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ LR +E R E+A Y KN+ D++D+ +L+Q FS+ G I+S
Sbjct: 319 GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSA 378
Query: 207 KIMR 210
K+MR
Sbjct: 379 KVMR 382
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N +VKN++ + + +F+K+GD+ SS + EGKS+G+GFV ++T E A A+E+L
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEEL 306
Query: 76 QGATVERMELYVGPFIRR------------ADRIQEGSSFN--NLYVKNLDDDMTEEILV 121
G +LYVG ++ A R+++ + + NLY+KNL DD+ ++ L
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLR 366
Query: 122 EKFSEFGKITSLVISKDA 139
+ FSE+G ITS + +DA
Sbjct: 367 QMFSEYGPITSAKVMRDA 384
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 47/244 (19%)
Query: 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYS 63
P S A L +V L ++ L ++FS+ G + S +V +S GY +V Y+
Sbjct: 61 PQSSASL------YVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYN 114
Query: 64 TPESALDAIEKL-----QGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEE 118
+ A+E+L +G M P +R+ + N+++KNLD + +
Sbjct: 115 STSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQ-------GNVFIKNLDVAIDNK 167
Query: 119 ILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVAR 155
L + F+ FG I S +++D NG SKG+G K +YV
Sbjct: 168 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGY 227
Query: 156 AQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRG 214
K +R++ +FE M+ +Y KNI+ E + E + F++ G ++S + R G
Sbjct: 228 HIPKKDRQS----KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEG 283
Query: 215 ISKG 218
S+G
Sbjct: 284 KSRG 287
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 45/117 (38%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVV--------VSQE---------------- 51
N ++KNLA ID+ KL Q+FS++G I S+KV+ +E
Sbjct: 350 NLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAA 409
Query: 52 ---------------------GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87
GKSKG+GFV +S P+ A A+ ++ +E LYV
Sbjct: 410 EAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYV 466
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVL-Y 152
+LYV LD +TE +L E FS+ G + S+ + +D N S G K L
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEE 125
Query: 153 VARAQKKAERKAILRAQFERMRKERAE---LYKNINDEVDEIELKQYFSQCGTISSVKIM 209
+ K I+ +Q + ++ + KN++ +D L F+ G I S K+
Sbjct: 126 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 185
Query: 210 RTDRGISKGH 219
+ + G SKG+
Sbjct: 186 QDENGNSKGY 195
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 160/293 (54%), Gaps = 41/293 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KVV + G S+GYGFV
Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR-IQEGS---SFNNLYVKNLDDDMT 116
+ T E+A AI+ + G + +++VG F R +R ++ G+ F N+Y+KN +DM
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ L E FS FG S+ + D +G S+GFG +++YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER++ L+ +FE++++ER Y KN++D +D+ L++ F GTI+S
Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQR 259
K+M T+ G SKG + E T + M + + ST P++ L QR
Sbjct: 324 KVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGR----IVSTK-PLYVALAQR 370
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 39/208 (18%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A++ N ++KN +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ ++ G V +YVG +R +R E F NLYVKNLDD
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVL 151
+ ++ L ++F +G ITS + + G SKGFG +K L
Sbjct: 305 IDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 152 YVARAQKKAERKAILRAQF-ERMRKERA 178
YVA AQ+K ERKAIL Q+ +R+ RA
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLATMRA 391
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD-ANGTSKGFGSKVLYVARAQK 158
G +LY+ +L D+TE +L EKFS G I S+ + +D A S + Y+ Q
Sbjct: 7 GYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYA----YINFQQP 62
Query: 159 KAERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQC 200
+A+ FE ++ + KN+++ +D L FS
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 201 GTISSVKIMRTDRGISKGH 219
G I S K++ + G S+G+
Sbjct: 123 GNILSCKVVCDEHG-SRGY 140
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 215/486 (44%), Gaps = 107/486 (22%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN FVKNL +I+N L+ S FG+I S VV + G SKGYGFV
Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI+K+ G + +++VG F R +R E F N+Y+KN +DM
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
+E L + F +FG S+ + D +G SKGFG K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER+ L+ FE+M+++R Y KN++D +D+ L++ FS GTI+S
Sbjct: 264 GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
K+M + G SKG C +A+AQ K ER +YL
Sbjct: 324 KVM-MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
Query: 235 -------RIMYAKQGP--GLASTIFPV---HPTLY--QRALQVYQAPDFRHGGMIPNGFS 280
R + ++ P G T P H Y + ++ +P + G P+ F
Sbjct: 383 MQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQ 442
Query: 281 PPPPS--------PLFLMAPDS------VTQYRGAMMNGHANFPMPLMLSNLQK------ 320
P + P M P S ++ R A + P P +
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRT 502
Query: 321 -PSYNYP--ISQPRAGQAAANNLTNGNHRAAASNEN--LSSMLVATSPDERKDILGQRLY 375
P Y Y + P+ + A +T + +S L + P ++K +LG+RL+
Sbjct: 503 VPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLF 562
Query: 376 PLVKKL 381
PL++ +
Sbjct: 563 PLIQAM 568
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD 138
+LYV +L D+TE +L EKFS G I S+ I +D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD 45
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 36/252 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R SG+GN F+KNL +IDN L+ FS FG+I S KV + G S+G+GFV
Sbjct: 85 MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFV 143
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
+ T E+A AI + G + +++VG F R +R E F N+YVKNL D+
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E+ L + FS+FGK+ S+ + +D +G S+ FG ++LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQK+ ER+ L+ +FE+M+++R Y KN++D +D+ +L++ FS G I+S
Sbjct: 264 GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Query: 207 KIMRTDRGISKG 218
K+M T+ G SKG
Sbjct: 324 KVM-TEGGHSKG 334
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
AR N +VKNL +D L +FS+FG + S KV+ G S+ +GFV + E A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDD 114
A+ + G V LY G +R +R E F NLYVKNLDD
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 115 MTEEILVEKFSEFGKITSLVISKDANGTSKGF-----------------------GSKVL 151
+ ++ L ++FS +G ITS + + G SKGF G+K L
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 152 YVARAQKKAERKAILRAQF 170
YVA AQ+K ERKAIL Q+
Sbjct: 364 YVALAQRKEERKAILTNQY 382
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 100 GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKK 159
G +LYV +L D+TE +L EKFS G I S+ + +D T + G Y+ Q
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDV-ATRRSLG--YAYINFQQPA 63
Query: 160 AERKAILRAQFERMRKERAELY------------------KNINDEVDEIELKQYFSQCG 201
+A+ FE ++ + + KN+ D +D L FS G
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 202 TISSVKIMRTDRG 214
I S K+ + G
Sbjct: 124 NILSCKVACDEHG 136
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 144/252 (57%), Gaps = 35/252 (13%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL + IDN LH F+ FG+I S KV ++ G S GYGFV
Sbjct: 121 MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---IQEG-SSFNNLYVKNLDDDMT 116
Y T E+A AI+ + G + ++YVG I R +R I+E ++F N+Y KN+D ++T
Sbjct: 180 HYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
++ + F++FGKITS V+ +D +G SKGFG + L+V
Sbjct: 240 DDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
Query: 154 ARAQKKAERKAILRAQFERMRKER------AELY-KNINDEVDEIELKQYFSQCGTISSV 206
ARAQKK+ER+ LR +E + E+ LY KNI + D+ L++ F+ G I+S
Sbjct: 300 ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSC 359
Query: 207 KIMRTDRGISKG 218
KIMR G+S+G
Sbjct: 360 KIMRAPSGVSRG 371
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 37/192 (19%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N + KN+ + + + ++F+KFG I S + ++GKSKG+GFV + A A+++L
Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDEL 287
Query: 76 QGATVERMELYVGPFIRRADRIQE-GSSFN-------------NLYVKNLDDDMTEEILV 121
+ + +L+V ++++R +E S+ NLY+KN+ + +E L
Sbjct: 288 HDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
E+F+ FG ITS I + +G S+GFG ++ LYVA AQ+
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 159 KAERKAILRAQF 170
K R+ L AQ
Sbjct: 408 KDVRRQQLEAQI 419
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 56/259 (21%)
Query: 4 TPNSEARLSGIGNAFVKNLASTIDNLKLH--------------QIFSKFGDIQSSKVVVS 49
TP A +GN +N A +N L+ +IFS G + S +V
Sbjct: 22 TPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRD 81
Query: 50 Q-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV-----GPFIRRADRIQEGSSF 103
+S GY +V + A+E+L + + + P +RR +
Sbjct: 82 AVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQ------- 134
Query: 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG---------------- 147
N+++KNLD + + L + F+ FG I S ++ + G S G+G
Sbjct: 135 GNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKH 193
Query: 148 -------SKVLYVARAQKKAERKAILRAQFERMRKERAELY-KNINDEVDEIELKQYFSQ 199
K +YV + ER+ A+ E R +Y KN++ EV + E ++ F++
Sbjct: 194 VNGMLLNDKKVYVGHHIPRKERQ----AKIEETRANFTNVYAKNVDPEVTDDEFEKLFTK 249
Query: 200 CGTISSVKIMRTDRGISKG 218
G I+S + R + G SKG
Sbjct: 250 FGKITSCVLQRDEDGKSKG 268
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68
A+ G+ N ++KN+ + D+ +L + F+ FG I S K++ + G S+G+GFV YS PE A
Sbjct: 325 AKFQGV-NLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEA 383
Query: 69 LDAIEKLQGATVERMELYVGPFIRRADRIQE 99
A+ ++ G ++ LYV R+ R Q+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 414
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 196/463 (42%), Gaps = 107/463 (23%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH F+ FG I S KV G SK +GFV
Sbjct: 125 MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFV 184
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E+YVG I + DR + ++F N+Y KN+D D +
Sbjct: 185 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFS 244
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
EE + F +GKITS+ + KD G SKGFG + +YV
Sbjct: 245 EEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYV 304
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ Q+E R E+ Y KN++D +D +L++ F G+I+S
Sbjct: 305 GRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSA 364
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYL-----RIMYAKQGPGLASTIFPVHPTLYQRA- 260
++M + G SKG + E T + R++Y K P++ L QR
Sbjct: 365 RVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGK----------PLYVALAQRKD 414
Query: 261 ---LQVYQAPDFRH---------GGMIPNGFSPP---PPSPLFLMAPDSVTQYRGAMMNG 305
Q+ Q R+ G IP F PP P F NG
Sbjct: 415 VRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGFFPP------------NG 462
Query: 306 HANFPMPLMLSNLQKPSYNYPISQ---PRAGQAAA---------------NNLTNG--NH 345
N P P + P P Q PR G NN NG
Sbjct: 463 RGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGANGGRQQ 522
Query: 346 RAAASNEN----------LSSMLVATSPDERKDILGQRLYPLV 378
R N N L++++ D++K ILG+ LYP +
Sbjct: 523 RGYYPNRNQNQKGRQQKDLAAIIANAPADQQKRILGEELYPKI 565
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 41/231 (17%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L +++ L +IFS G + S +V KS GY +V + E AIE L
Sbjct: 54 YVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLN 113
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ +E + P +RR + N+++KNL + + L + F+ FGKI
Sbjct: 114 YSLIEGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPAIDNKALHDTFTAFGKIL 166
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + +YV + K +R+ +
Sbjct: 167 SCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRE----S 222
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+FE M+ +Y KNI+ + E E K+ F G I+S+ + + G SKG
Sbjct: 223 KFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKG 273
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 70 DAIEKLQ------GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEK 123
+++EKL +T E + G AD Q + +LYV L+ + E +L E
Sbjct: 11 ESLEKLNLDSAPVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEI 70
Query: 124 FSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE------------ 171
FS G++ S+ + +DA T K G YV + + KAI +
Sbjct: 71 FSPIGQVASIRVCRDAV-TKKSLG--YAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWS 127
Query: 172 ------RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISK 217
R + KN++ +D L F+ G I S K+ D GISK
Sbjct: 128 QRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISK 179
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 140/271 (51%), Gaps = 34/271 (12%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN ++KNL IDN LH FS FG I S K+ + G S+G+GFV
Sbjct: 120 MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFV 179
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQ----EGSSFNNLYVKNLDDDMT 116
Y + ESA AI+ + G + +++VGP + ++DR+Q + +SF N+++KNL ++T
Sbjct: 180 HYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEIT 239
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E E ++FG+ +S+ +S + G GFG L+
Sbjct: 240 EAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFA 299
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RA+KK ER LR Q+E R E+ Y KN++D +D+ +L+ F+ GTI+S
Sbjct: 300 GRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSA 359
Query: 207 KIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237
K+M + G SKG + E T + M
Sbjct: 360 KVMVDEAGKSKGFGFVCYSSPEEATKAVTEM 390
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 37/199 (18%)
Query: 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75
N F+KNL + I + ++ +KFG+ S + + EGK G+GFV Y + A+ AI+ L
Sbjct: 228 NVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGL 287
Query: 76 QGATVERMELYVGPFIR---RADRIQ---EGSSFN--------NLYVKNLDDDMTEEILV 121
+ +L+ G + RAD ++ E S NLY+KNLDD + ++ L
Sbjct: 288 SETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLR 347
Query: 122 EKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYVARAQK 158
+F+ G ITS + D G SKGFG K LYV AQ+
Sbjct: 348 AEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQR 407
Query: 159 KAERKAILRAQFERMRKER 177
K R++ L+ Q + + R
Sbjct: 408 KDVRRSQLQQQIQAKNQMR 426
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L ++ L +IF+ G + S +V +S GY +V + + A+E+L
Sbjct: 49 YVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELN 108
Query: 77 GATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136
+ ++ + + D + N+Y+KNLD + + L + FS FG+I S I+
Sbjct: 109 YSPIKERPCRI--MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIA 166
Query: 137 KDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRAQFERM 173
D G S+GFG K ++V K++R FE
Sbjct: 167 TDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDR----MQSFEEQ 222
Query: 174 RKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG 218
+ ++ KN+ E+ E E ++ ++ G SSV + D G G
Sbjct: 223 KNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTG 268
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-----------NGTSKGFGSKVLYV 153
+LYV LD +TE +L E F+ G +TS+ + +DA N ++ G + L
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 154 ARAQKKAERKA-ILRAQFE-RMRKERA-ELY-KNINDEVDEIELKQYFSQCGTISSVKIM 209
ER I+ +Q + +RK A +Y KN++ +D L FS G I S KI
Sbjct: 107 LNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIA 166
Query: 210 RTDRGISKG 218
+ G S+G
Sbjct: 167 TDEFGNSRG 175
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 199/456 (43%), Gaps = 92/456 (20%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS + R +G GN F+KNL IDN LH FS FG I S KV + G+SK +GFV
Sbjct: 132 MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFV 191
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQE----GSSFNNLYVKNLDDDMT 116
Y T E+A AIE + G + E++VG + + DR + ++F N+YVKNL ++
Sbjct: 192 HYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVD 251
Query: 117 EEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLYV 153
E F FG +TS+ + D G S+GFG + LYV
Sbjct: 252 NAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYV 311
Query: 154 ARAQKKAERKAILRAQFERMRKERAELY-------KNINDEVDEIELKQYFSQCGTISSV 206
RAQKK ER L+ +E R E+ Y KN++D +D +L++ F GTI+S
Sbjct: 312 GRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSA 371
Query: 207 KIMRTDRGISKGH---C-------------------------MAIAQTKRERTSYL---- 234
++M D G SKG C +A+AQ K R S L
Sbjct: 372 RVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQI 431
Query: 235 ------RIMYAKQGPGLASTIFPVHPTLYQRALQVYQAPDFRHGGMIPNGFSPPPPSPLF 288
R+ A G+ + P Y + + P+ R G P PP+P
Sbjct: 432 QARNQMRMQNAAAAAGMPGQF--MSPMFYGQQPGFF-PPNGRGGAQ-----GPFPPNPQM 483
Query: 289 LMA-----PDSVTQYRGAMMNGHANFPMPLM-LSNLQKPSYNYPISQPRAGQAAANNLTN 342
+M P Q+ A NG P+P+ + + +N P Q + A N
Sbjct: 484 MMPRGGQMPPPQGQWPRAGPNGQ---PVPVYGMPPVYGGEFNGPNGQRQQRGAYP---PN 537
Query: 343 GNHRAAASNENLSSMLVATSPDERKDILGQRLYPLV 378
N + +L++++ D++K ILG+ LYP +
Sbjct: 538 RNQKGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 69/279 (24%)
Query: 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ 76
+V L +++ L +IFS G + S +V KS GY +V + AIE+L
Sbjct: 61 YVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELN 120
Query: 77 GATVERMELYV-----GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKIT 131
+ V+ + P +RR + N+++KNL + + L + FS FG+I
Sbjct: 121 YSLVDGRPCRIMWSQRDPSLRR-------NGDGNIFIKNLHPAIDNKALHDTFSAFGRIL 173
Query: 132 SLVISKDANGTSKGFG-----------------------SKVLYVARAQKKAERKAILRA 168
S ++ D G SK FG + ++V + K +R+ +
Sbjct: 174 SCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRE----S 229
Query: 169 QFERMRKERAELY-KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKG--------H 219
+FE M+ +Y KN+ EVD + ++ F G ++SV + G S+G H
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 220 CMAI--------------------AQTKRERTSYLRIMY 238
A+ AQ KRER L+ +Y
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRVVGSK--PLHVTLGQ 377
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 42/293 (14%)
Query: 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFV 60
MWS P+ R SG+GN F+KNL +IDN L +FS FG+I S KVV G SKGY +V
Sbjct: 92 MWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYV 150
Query: 61 QYSTPESALDAIEKLQGATVERMELYVGPFI----RRAD-RIQEGSSFNNLYVKNLDDDM 115
+ + +A AI + G + ++YVG F R A+ R ++ ++F N++VKN+ DD+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 116 TEEILVEKFSEFGKITSLVISKDANGTSKGFG-----------------------SKVLY 152
+E L E F E+G S+ + +DA+G SKGFG KVLY
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLY 270
Query: 153 VARAQKKAERKAILRAQF------ERMRKERAELY-KNINDEVDEIELKQYFSQCGTISS 205
V RAQKK ER A LR +F E+ R +Y KN+++ +++ +LK+ FS G+IS
Sbjct: 271 VGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISR 330
Query: 206 VKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQGPGLASTIFPVHPTLYQ 258
K+M + G KG + + E T + M G + S P+H TL Q
Sbjct: 331 AKVM-MEVGQGKGFGVVCFSSFEEATKAVDEM---NGRIVGSK--PLHVTLGQ 377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,119,711
Number of Sequences: 539616
Number of extensions: 5954052
Number of successful extensions: 23610
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 400
Number of HSP's that attempted gapping in prelim test: 21144
Number of HSP's gapped (non-prelim): 1984
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)