Query 039806
Match_columns 398
No_of_seqs 395 out of 2235
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 4.4E-62 9.5E-67 506.8 34.9 238 1-238 75-348 (562)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-38 2E-42 306.6 21.7 224 14-241 3-336 (352)
3 KOG0123 Polyadenylate-binding 100.0 7.5E-38 1.6E-42 304.5 20.2 230 1-239 70-334 (369)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-36 2.6E-41 316.2 20.2 224 15-240 1-243 (562)
5 KOG0117 Heterogeneous nuclear 100.0 4E-32 8.6E-37 257.1 23.7 203 13-237 82-314 (506)
6 KOG0145 RNA-binding protein EL 100.0 2.9E-33 6.3E-38 248.0 13.5 221 14-238 41-342 (360)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 8.6E-32 1.9E-36 273.5 20.8 209 14-239 58-292 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.8E-30 6.1E-35 262.9 16.9 217 14-240 2-337 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 6.9E-29 1.5E-33 252.0 21.0 224 13-240 88-434 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 6.1E-29 1.3E-33 240.9 19.3 154 9-239 102-258 (346)
11 KOG0127 Nucleolar protein fibr 100.0 3E-29 6.4E-34 242.5 14.4 223 15-237 6-355 (678)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.6E-29 1.4E-33 252.9 17.4 223 13-241 95-461 (481)
13 KOG0123 Polyadenylate-binding 100.0 7E-29 1.5E-33 241.7 16.1 209 15-241 2-233 (369)
14 KOG0144 RNA-binding protein CU 100.0 5.9E-29 1.3E-33 234.6 13.3 133 11-146 31-167 (510)
15 KOG0148 Apoptosis-promoting RN 100.0 3.3E-28 7.2E-33 217.3 14.3 192 12-242 4-226 (321)
16 TIGR01645 half-pint poly-U bin 100.0 3.5E-27 7.6E-32 240.2 22.7 135 12-146 105-248 (612)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.9E-28 1.3E-32 248.4 14.8 224 12-241 173-489 (509)
18 KOG0148 Apoptosis-promoting RN 99.9 2.9E-24 6.3E-29 192.1 13.3 136 14-154 62-210 (321)
19 KOG0124 Polypyrimidine tract-b 99.9 1.2E-23 2.5E-28 194.9 13.7 133 14-146 113-254 (544)
20 KOG0127 Nucleolar protein fibr 99.9 6.5E-22 1.4E-26 191.9 16.3 223 14-236 117-516 (678)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.4E-22 5.2E-27 197.3 13.4 138 13-150 88-317 (352)
22 KOG0131 Splicing factor 3b, su 99.9 2.9E-22 6.3E-27 169.8 9.9 136 9-147 4-142 (203)
23 TIGR01648 hnRNP-R-Q heterogene 99.8 3.4E-21 7.3E-26 196.3 9.6 187 13-204 137-369 (578)
24 KOG0146 RNA-binding protein ET 99.8 3.9E-20 8.4E-25 165.3 8.8 236 5-240 10-351 (371)
25 KOG0145 RNA-binding protein EL 99.8 1.6E-19 3.4E-24 160.9 10.2 145 7-151 120-327 (360)
26 KOG0144 RNA-binding protein CU 99.8 9.8E-20 2.1E-24 172.5 8.9 146 102-247 33-196 (510)
27 KOG0109 RNA-binding protein LA 99.8 1.4E-19 3.1E-24 163.6 8.1 112 15-139 3-114 (346)
28 TIGR01645 half-pint poly-U bin 99.8 2.7E-19 5.7E-24 182.8 8.9 139 102-240 106-270 (612)
29 KOG4205 RNA-binding protein mu 99.8 3.6E-19 7.8E-24 168.1 8.0 134 13-147 5-142 (311)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.8 4.3E-18 9.3E-23 175.3 16.0 127 13-139 294-455 (509)
31 KOG4212 RNA-binding protein hn 99.8 2.9E-18 6.3E-23 162.6 12.5 225 14-238 44-278 (608)
32 KOG0110 RNA-binding protein (R 99.8 8.1E-19 1.8E-23 175.6 8.4 223 13-240 384-679 (725)
33 KOG0147 Transcriptional coacti 99.8 1.3E-18 2.9E-23 169.9 9.5 134 12-146 177-322 (549)
34 PLN03134 glycine-rich RNA-bind 99.8 3.8E-18 8.3E-23 145.6 11.2 83 12-94 32-115 (144)
35 KOG0117 Heterogeneous nuclear 99.7 1.9E-17 4.2E-22 157.7 11.1 126 13-138 163-294 (506)
36 KOG0110 RNA-binding protein (R 99.7 5.4E-17 1.2E-21 162.7 12.3 138 16-153 517-664 (725)
37 PF00076 RRM_1: RNA recognitio 99.7 1.9E-16 4.1E-21 117.7 9.8 70 17-86 1-70 (70)
38 TIGR01622 SF-CC1 splicing fact 99.7 1.5E-16 3.2E-21 161.8 10.4 139 102-240 88-252 (457)
39 KOG0122 Translation initiation 99.6 1.9E-15 4.1E-20 134.2 9.1 83 11-93 186-269 (270)
40 PF14259 RRM_6: RNA recognitio 99.6 5.2E-15 1.1E-19 110.4 9.5 70 17-86 1-70 (70)
41 COG0724 RNA-binding proteins ( 99.6 2.2E-14 4.8E-19 134.1 14.4 127 14-140 115-262 (306)
42 KOG0125 Ataxin 2-binding prote 99.6 3.8E-15 8.2E-20 137.2 8.7 84 10-94 92-175 (376)
43 TIGR01659 sex-lethal sex-letha 99.6 7.3E-15 1.6E-19 142.8 10.8 81 13-93 192-275 (346)
44 KOG0105 Alternative splicing f 99.6 1.3E-14 2.7E-19 123.7 10.6 127 12-140 4-152 (241)
45 KOG0149 Predicted RNA-binding 99.6 4.1E-15 8.9E-20 131.6 7.1 80 11-91 9-89 (247)
46 KOG4205 RNA-binding protein mu 99.6 1.6E-15 3.5E-20 143.4 4.5 133 102-234 5-157 (311)
47 KOG4211 Splicing factor hnRNP- 99.6 9.6E-14 2.1E-18 134.4 16.5 222 13-238 9-343 (510)
48 PLN03120 nucleic acid binding 99.5 3E-14 6.6E-19 130.3 10.1 78 13-93 3-80 (260)
49 smart00517 PolyA C-terminal do 99.5 2.4E-15 5.2E-20 107.4 1.6 33 362-394 1-33 (64)
50 KOG0121 Nuclear cap-binding pr 99.5 2.7E-14 5.9E-19 114.6 7.1 80 12-91 34-114 (153)
51 KOG4206 Spliceosomal protein s 99.5 2.4E-13 5.1E-18 120.2 11.8 124 14-139 9-182 (221)
52 KOG0124 Polypyrimidine tract-b 99.5 3.2E-14 6.9E-19 132.6 6.5 137 102-238 112-274 (544)
53 KOG0126 Predicted RNA-binding 99.5 4.3E-15 9.3E-20 126.2 0.3 84 11-94 32-116 (219)
54 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 5E-18 100.5 9.6 72 16-88 1-72 (72)
55 KOG0107 Alternative splicing f 99.5 8E-14 1.7E-18 118.0 7.8 80 12-95 8-87 (195)
56 KOG0113 U1 small nuclear ribon 99.5 1.9E-13 4.1E-18 124.7 9.9 87 5-91 92-179 (335)
57 KOG1457 RNA binding protein (c 99.5 5.6E-13 1.2E-17 116.9 12.3 220 11-240 31-272 (284)
58 PF00658 PABP: Poly-adenylate 99.5 3.8E-15 8.2E-20 110.3 -1.2 41 353-393 3-43 (72)
59 PLN03121 nucleic acid binding 99.5 2.2E-13 4.9E-18 122.6 9.9 77 13-92 4-80 (243)
60 KOG0130 RNA-binding protein RB 99.5 8.6E-14 1.9E-18 112.8 5.6 81 14-94 72-153 (170)
61 KOG4207 Predicted splicing fac 99.4 1.8E-13 4E-18 118.6 7.5 85 7-91 6-91 (256)
62 smart00360 RRM RNA recognition 99.4 5.1E-13 1.1E-17 98.2 8.6 70 19-88 1-71 (71)
63 PLN03213 repressor of silencin 99.4 3E-13 6.5E-18 130.5 9.2 77 14-93 10-88 (759)
64 KOG0131 Splicing factor 3b, su 99.4 1.3E-13 2.8E-18 117.5 5.1 137 102-238 8-161 (203)
65 cd00590 RRM RRM (RNA recogniti 99.4 1.8E-12 3.9E-17 96.2 10.2 74 16-89 1-74 (74)
66 KOG0108 mRNA cleavage and poly 99.4 3.9E-13 8.5E-18 132.6 8.4 83 15-97 19-102 (435)
67 KOG0114 Predicted RNA-binding 99.4 1.1E-12 2.4E-17 101.6 8.2 84 9-94 13-96 (124)
68 KOG0111 Cyclophilin-type pepti 99.4 2.3E-13 4.9E-18 119.0 3.9 85 12-96 8-93 (298)
69 KOG0109 RNA-binding protein LA 99.4 3.2E-13 7E-18 122.7 4.8 110 104-238 3-134 (346)
70 KOG0132 RNA polymerase II C-te 99.3 4E-11 8.6E-16 121.7 17.3 108 13-125 420-528 (894)
71 smart00361 RRM_1 RNA recogniti 99.3 7.2E-12 1.6E-16 93.5 8.3 60 28-87 2-69 (70)
72 KOG0106 Alternative splicing f 99.3 4E-12 8.7E-17 113.5 6.5 72 15-93 2-73 (216)
73 KOG0146 RNA-binding protein ET 99.3 3E-12 6.5E-17 115.1 5.3 84 11-94 282-366 (371)
74 PF13893 RRM_5: RNA recognitio 99.3 1.4E-11 3E-16 87.7 7.3 56 31-90 1-56 (56)
75 KOG1548 Transcription elongati 99.3 9.2E-11 2E-15 109.3 13.9 184 14-239 134-337 (382)
76 KOG0120 Splicing factor U2AF, 99.3 2.2E-11 4.7E-16 121.0 10.3 183 14-241 289-479 (500)
77 KOG0147 Transcriptional coacti 99.2 5E-12 1.1E-16 124.2 3.8 137 102-238 178-342 (549)
78 KOG4212 RNA-binding protein hn 99.2 4.4E-12 9.5E-17 120.9 3.2 123 14-146 136-258 (608)
79 KOG4454 RNA binding protein (R 99.2 3.7E-12 8.1E-17 111.5 1.8 126 12-151 7-132 (267)
80 KOG1190 Polypyrimidine tract-b 99.2 2.1E-10 4.6E-15 108.9 11.8 221 13-239 149-475 (492)
81 PLN03134 glycine-rich RNA-bind 99.2 7.1E-11 1.5E-15 100.8 6.9 65 175-239 33-99 (144)
82 KOG0122 Translation initiation 99.1 1.4E-10 3E-15 103.4 5.8 64 175-238 188-253 (270)
83 PF00076 RRM_1: RNA recognitio 99.1 2.7E-10 5.9E-15 84.2 6.4 61 179-239 1-62 (70)
84 KOG0415 Predicted peptidyl pro 99.1 2.6E-10 5.7E-15 106.4 6.6 84 11-94 236-320 (479)
85 KOG0149 Predicted RNA-binding 99.0 2.2E-10 4.7E-15 101.8 5.5 59 176-234 12-72 (247)
86 KOG1456 Heterogeneous nuclear 99.0 7.6E-09 1.6E-13 97.4 15.8 221 17-242 125-473 (494)
87 KOG1365 RNA-binding protein Fu 99.0 3.2E-08 6.8E-13 93.6 19.2 222 16-238 62-346 (508)
88 KOG4208 Nucleolar RNA-binding 99.0 6.7E-10 1.5E-14 96.9 7.1 79 14-92 49-129 (214)
89 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.1E-09 2.5E-14 107.6 7.6 82 10-91 401-483 (940)
90 KOG1190 Polypyrimidine tract-b 98.9 1.3E-08 2.9E-13 96.9 12.5 117 14-134 297-445 (492)
91 PF14259 RRM_6: RNA recognitio 98.9 4.9E-09 1.1E-13 77.8 6.9 59 179-237 1-60 (70)
92 KOG0125 Ataxin 2-binding prote 98.9 2E-09 4.3E-14 99.8 5.3 67 174-241 94-161 (376)
93 KOG0153 Predicted RNA-binding 98.8 7.8E-09 1.7E-13 96.7 8.2 76 12-92 226-302 (377)
94 KOG0533 RRM motif-containing p 98.8 9E-09 2E-13 94.1 8.1 83 12-94 81-163 (243)
95 KOG0226 RNA-binding proteins [ 98.8 4.3E-09 9.2E-14 94.5 4.9 89 5-93 179-270 (290)
96 KOG0116 RasGAP SH3 binding pro 98.8 1.3E-08 2.8E-13 100.2 7.5 77 14-91 288-365 (419)
97 KOG0128 RNA-binding protein SA 98.8 4.5E-10 9.7E-15 115.5 -3.4 220 15-240 572-801 (881)
98 KOG4211 Splicing factor hnRNP- 98.8 3.9E-08 8.4E-13 96.0 9.8 133 102-236 9-165 (510)
99 PLN03120 nucleic acid binding 98.7 1.7E-08 3.6E-13 92.8 6.5 61 176-239 4-65 (260)
100 KOG0129 Predicted RNA-binding 98.7 7.4E-08 1.6E-12 94.7 10.8 132 12-147 257-416 (520)
101 PLN03121 nucleic acid binding 98.7 2.6E-08 5.7E-13 90.1 6.3 56 177-234 6-62 (243)
102 KOG0113 U1 small nuclear ribon 98.7 3.1E-08 6.8E-13 90.9 6.0 68 175-242 100-169 (335)
103 KOG4660 Protein Mei2, essentia 98.7 1.7E-08 3.7E-13 99.9 4.3 78 5-86 66-143 (549)
104 smart00360 RRM RNA recognition 98.6 1E-07 2.2E-12 69.5 6.9 57 181-237 1-59 (71)
105 smart00362 RRM_2 RNA recogniti 98.6 1.1E-07 2.3E-12 69.7 6.9 58 179-237 2-60 (72)
106 KOG4207 Predicted splicing fac 98.6 2.9E-08 6.3E-13 86.6 4.3 65 177-241 14-80 (256)
107 KOG0121 Nuclear cap-binding pr 98.6 7E-08 1.5E-12 78.1 5.7 66 171-236 31-98 (153)
108 KOG4209 Splicing factor RNPS1, 98.6 6.1E-08 1.3E-12 88.8 5.1 82 11-93 98-180 (231)
109 PF04059 RRM_2: RNA recognitio 98.5 6.6E-07 1.4E-11 70.4 9.4 77 15-91 2-85 (97)
110 KOG4210 Nuclear localization s 98.5 1.4E-07 3E-12 89.3 5.7 135 12-147 86-230 (285)
111 KOG0126 Predicted RNA-binding 98.5 3.1E-08 6.8E-13 84.8 0.7 56 175-230 34-91 (219)
112 KOG0105 Alternative splicing f 98.5 2.4E-07 5.1E-12 79.6 5.9 132 102-239 5-173 (241)
113 KOG0128 RNA-binding protein SA 98.4 1.7E-08 3.6E-13 104.2 -2.2 114 13-147 666-780 (881)
114 COG0724 RNA-binding proteins ( 98.4 3.5E-07 7.5E-12 85.2 6.5 65 176-240 115-181 (306)
115 KOG0151 Predicted splicing reg 98.4 5.3E-07 1.1E-11 91.4 8.0 80 12-91 172-255 (877)
116 cd00590 RRM RRM (RNA recogniti 98.4 7.7E-07 1.7E-11 65.4 7.1 61 179-239 2-63 (74)
117 KOG1365 RNA-binding protein Fu 98.4 1.2E-06 2.5E-11 83.2 9.4 135 12-147 159-327 (508)
118 KOG1456 Heterogeneous nuclear 98.4 4.4E-06 9.6E-11 79.1 12.9 124 13-140 286-444 (494)
119 PLN03213 repressor of silencin 98.4 5.3E-07 1.2E-11 87.9 6.7 62 176-240 10-74 (759)
120 smart00361 RRM_1 RNA recogniti 98.4 9E-07 2E-11 65.8 6.0 51 190-240 2-61 (70)
121 PF11608 Limkain-b1: Limkain b 98.4 1.6E-06 3.4E-11 65.2 7.1 71 15-94 3-78 (90)
122 KOG0114 Predicted RNA-binding 98.4 7.7E-07 1.7E-11 69.4 5.6 63 175-239 17-80 (124)
123 KOG4206 Spliceosomal protein s 98.4 1E-06 2.2E-11 78.4 7.1 136 103-241 9-208 (221)
124 KOG4307 RNA binding protein RB 98.3 5.1E-06 1.1E-10 84.3 10.9 130 12-143 309-475 (944)
125 KOG0111 Cyclophilin-type pepti 98.3 3E-07 6.6E-12 81.0 1.8 66 175-240 9-76 (298)
126 KOG0108 mRNA cleavage and poly 98.2 1.7E-06 3.7E-11 86.0 5.6 61 177-237 19-81 (435)
127 KOG0120 Splicing factor U2AF, 98.2 2.3E-06 4.9E-11 85.7 5.9 127 14-146 175-333 (500)
128 KOG4849 mRNA cleavage factor I 98.2 1.2E-05 2.6E-10 75.6 9.5 74 16-89 82-158 (498)
129 KOG0107 Alternative splicing f 98.2 2.7E-06 5.8E-11 72.7 4.9 63 175-241 9-72 (195)
130 KOG0132 RNA polymerase II C-te 98.1 7.4E-05 1.6E-09 77.1 15.2 57 176-237 421-478 (894)
131 KOG2193 IGF-II mRNA-binding pr 98.1 1.9E-06 4E-11 82.7 2.9 110 15-135 2-112 (584)
132 KOG0415 Predicted peptidyl pro 98.1 2.4E-06 5.3E-11 80.3 3.6 67 173-239 236-304 (479)
133 KOG0130 RNA-binding protein RB 98.1 4.5E-06 9.7E-11 68.3 4.2 64 178-241 74-139 (170)
134 KOG1457 RNA binding protein (c 98.0 4.8E-06 1E-10 73.8 4.2 68 10-80 206-273 (284)
135 KOG0112 Large RNA-binding prot 98.0 3.2E-06 7E-11 88.0 3.4 121 10-136 368-488 (975)
136 PF13893 RRM_5: RNA recognitio 98.0 1.3E-05 2.9E-10 56.5 5.6 44 193-240 1-45 (56)
137 KOG1995 Conserved Zn-finger pr 97.9 1.1E-05 2.4E-10 76.4 5.1 88 7-94 59-155 (351)
138 KOG4307 RNA binding protein RB 97.9 2.7E-05 5.8E-10 79.2 7.6 79 11-89 864-943 (944)
139 KOG0226 RNA-binding proteins [ 97.9 2.8E-05 6E-10 70.3 5.9 134 14-147 96-235 (290)
140 KOG4210 Nuclear localization s 97.8 1.4E-05 3E-10 75.8 2.6 84 12-96 182-267 (285)
141 KOG0106 Alternative splicing f 97.7 2E-05 4.2E-10 70.9 3.1 71 13-90 98-168 (216)
142 PF08777 RRM_3: RNA binding mo 97.7 5.7E-05 1.2E-09 60.8 5.4 59 15-78 2-60 (105)
143 KOG0153 Predicted RNA-binding 97.7 4.9E-05 1.1E-09 71.6 4.4 61 173-238 225-286 (377)
144 KOG4676 Splicing factor, argin 97.6 0.00015 3.3E-09 69.3 7.3 161 14-210 7-185 (479)
145 KOG0533 RRM motif-containing p 97.5 0.00013 2.8E-09 67.0 5.6 62 177-238 84-146 (243)
146 KOG4208 Nucleolar RNA-binding 97.5 0.00021 4.5E-09 63.0 6.0 63 175-237 48-113 (214)
147 KOG0129 Predicted RNA-binding 97.5 0.00036 7.8E-09 69.2 8.3 131 102-236 258-433 (520)
148 COG5175 MOT2 Transcriptional r 97.5 0.00023 4.9E-09 66.9 6.2 77 15-91 115-201 (480)
149 KOG4454 RNA binding protein (R 97.5 2.2E-05 4.9E-10 69.4 -0.4 120 102-226 8-135 (267)
150 KOG2314 Translation initiation 97.5 0.00024 5.1E-09 71.0 6.4 80 12-91 56-142 (698)
151 KOG0151 Predicted splicing reg 97.4 0.00035 7.6E-09 71.5 7.6 65 177-242 175-245 (877)
152 KOG1548 Transcription elongati 97.4 0.001 2.2E-08 63.0 9.5 82 8-92 259-351 (382)
153 KOG2202 U2 snRNP splicing fact 97.4 6.9E-05 1.5E-09 68.1 1.6 63 29-91 83-146 (260)
154 KOG0116 RasGAP SH3 binding pro 97.3 0.00022 4.7E-09 70.8 4.3 59 178-236 290-350 (419)
155 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.00071 1.5E-08 53.7 5.8 76 13-90 5-89 (100)
156 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00089 1.9E-08 46.7 5.3 52 15-72 2-53 (53)
157 KOG4661 Hsp27-ERE-TATA-binding 97.0 0.00094 2E-08 66.8 5.2 66 175-240 404-471 (940)
158 KOG1855 Predicted RNA-binding 97.0 0.00062 1.4E-08 66.0 3.7 77 13-89 230-320 (484)
159 KOG3152 TBP-binding protein, a 96.9 0.00097 2.1E-08 60.6 3.8 72 13-84 73-157 (278)
160 KOG1855 Predicted RNA-binding 96.8 7.3E-05 1.6E-09 72.3 -3.9 62 175-236 230-306 (484)
161 KOG0115 RNA-binding protein p5 96.7 0.0016 3.4E-08 59.3 4.0 77 15-91 32-112 (275)
162 PF08777 RRM_3: RNA binding mo 96.7 0.0026 5.6E-08 51.1 4.7 58 178-239 3-60 (105)
163 KOG4209 Splicing factor RNPS1, 96.7 0.0013 2.9E-08 60.4 3.1 68 173-241 98-167 (231)
164 KOG4660 Protein Mei2, essentia 96.6 0.0014 3.1E-08 65.6 3.2 63 173-239 72-135 (549)
165 PF08952 DUF1866: Domain of un 96.6 0.0081 1.8E-07 50.6 6.9 72 13-92 26-106 (146)
166 KOG0115 RNA-binding protein p5 96.5 0.0072 1.6E-07 55.1 6.6 79 67-160 6-84 (275)
167 PF08675 RNA_bind: RNA binding 96.4 0.017 3.7E-07 43.7 7.0 54 15-76 10-63 (87)
168 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0047 1E-07 43.1 3.6 50 179-233 4-53 (53)
169 PF04059 RRM_2: RNA recognitio 96.1 0.015 3.3E-07 45.8 5.9 63 177-239 2-68 (97)
170 KOG1996 mRNA splicing factor [ 95.9 0.022 4.7E-07 53.0 6.7 62 29-90 301-364 (378)
171 KOG2416 Acinus (induces apopto 95.9 0.0078 1.7E-07 60.8 4.1 82 5-91 434-520 (718)
172 KOG1924 RhoA GTPase effector D 95.7 0.028 6.1E-07 58.7 7.3 11 28-38 85-95 (1102)
173 KOG2068 MOT2 transcription fac 95.6 0.0073 1.6E-07 57.3 2.5 79 15-93 78-163 (327)
174 PF10309 DUF2414: Protein of u 95.6 0.066 1.4E-06 38.4 6.6 52 16-75 7-62 (62)
175 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.032 6.9E-07 49.2 3.9 70 13-82 6-82 (176)
176 KOG0112 Large RNA-binding prot 94.8 0.017 3.7E-07 61.1 2.5 132 102-239 371-514 (975)
177 KOG4285 Mitotic phosphoprotein 94.1 0.17 3.8E-06 47.4 7.0 74 14-94 197-271 (350)
178 KOG2591 c-Mpl binding protein, 93.8 0.12 2.5E-06 52.3 5.6 68 14-87 175-246 (684)
179 PF11767 SET_assoc: Histone ly 93.6 0.43 9.3E-06 34.8 7.0 56 24-87 10-65 (66)
180 KOG2314 Translation initiation 93.5 0.082 1.8E-06 53.4 4.1 50 191-240 79-129 (698)
181 COG5175 MOT2 Transcriptional r 93.5 0.21 4.4E-06 47.5 6.4 59 182-240 120-189 (480)
182 KOG2253 U1 snRNP complex, subu 92.7 0.054 1.2E-06 55.8 1.5 70 12-89 38-107 (668)
183 PF07576 BRAP2: BRCA1-associat 92.7 1.3 2.8E-05 35.8 9.3 65 17-82 16-81 (110)
184 PF04847 Calcipressin: Calcipr 92.4 0.3 6.5E-06 43.3 5.7 61 27-92 8-70 (184)
185 KOG2193 IGF-II mRNA-binding pr 91.4 0.078 1.7E-06 51.7 1.0 131 104-242 2-145 (584)
186 PF15023 DUF4523: Protein of u 91.4 0.57 1.2E-05 39.3 5.8 72 12-90 84-159 (166)
187 KOG2135 Proteins containing th 90.6 0.14 3E-06 50.8 1.9 71 17-93 375-446 (526)
188 KOG4676 Splicing factor, argin 90.6 0.082 1.8E-06 51.1 0.2 128 6-136 44-184 (479)
189 PF07292 NID: Nmi/IFP 35 domai 90.4 0.36 7.7E-06 37.3 3.5 68 58-125 1-74 (88)
190 PF05172 Nup35_RRM: Nup53/35/4 89.8 0.28 6E-06 39.0 2.6 59 177-236 7-74 (100)
191 PF03880 DbpA: DbpA RNA bindin 89.5 1.3 2.8E-05 33.0 5.9 59 24-90 11-74 (74)
192 KOG3152 TBP-binding protein, a 89.1 0.27 5.8E-06 45.1 2.3 67 175-241 73-153 (278)
193 KOG1996 mRNA splicing factor [ 89.1 1.7 3.8E-05 40.7 7.5 50 189-238 299-351 (378)
194 KOG4849 mRNA cleavage factor I 87.7 7.4 0.00016 37.5 10.9 43 177-219 81-126 (498)
195 PF08675 RNA_bind: RNA binding 86.3 2.9 6.3E-05 31.9 6.0 50 182-237 14-63 (87)
196 PRK14548 50S ribosomal protein 85.3 3.5 7.7E-05 31.6 6.2 59 15-75 21-81 (84)
197 KOG0804 Cytoplasmic Zn-finger 84.8 3.6 7.7E-05 41.0 7.5 68 14-82 74-142 (493)
198 KOG1995 Conserved Zn-finger pr 84.1 1.1 2.3E-05 43.3 3.5 61 175-235 65-135 (351)
199 PF11608 Limkain-b1: Limkain b 84.0 1.6 3.4E-05 33.4 3.6 53 178-238 4-61 (90)
200 KOG2591 c-Mpl binding protein, 83.6 1 2.2E-05 45.8 3.2 54 179-237 178-233 (684)
201 TIGR03636 L23_arch archaeal ri 81.2 6.9 0.00015 29.4 6.2 59 15-75 14-74 (77)
202 PF14111 DUF4283: Domain of un 80.6 1.2 2.6E-05 37.8 2.3 108 24-136 27-138 (153)
203 KOG2318 Uncharacterized conser 78.6 6.7 0.00014 40.3 7.0 77 11-87 171-300 (650)
204 KOG4574 RNA-binding protein (c 78.2 1.3 2.8E-05 47.2 2.0 69 18-91 302-372 (1007)
205 PF10567 Nab6_mRNP_bdg: RNA-re 77.3 4.9 0.00011 37.9 5.3 60 13-72 14-81 (309)
206 KOG2068 MOT2 transcription fac 73.5 6.1 0.00013 37.9 5.0 56 182-237 83-146 (327)
207 PF11767 SET_assoc: Histone ly 72.8 9.8 0.00021 27.7 4.8 45 187-238 11-55 (66)
208 PF10567 Nab6_mRNP_bdg: RNA-re 72.3 6.7 0.00014 37.0 4.8 39 174-212 13-51 (309)
209 PF15023 DUF4523: Protein of u 70.0 8 0.00017 32.6 4.3 52 182-238 96-147 (166)
210 PF03468 XS: XS domain; Inter 68.8 6.3 0.00014 32.2 3.5 50 17-68 11-69 (116)
211 PF10309 DUF2414: Protein of u 68.7 11 0.00025 27.0 4.3 52 178-235 7-61 (62)
212 PTZ00191 60S ribosomal protein 66.0 22 0.00047 30.2 6.2 60 13-74 80-141 (145)
213 KOG4410 5-formyltetrahydrofola 64.4 13 0.00028 34.9 5.0 47 15-66 331-378 (396)
214 KOG2202 U2 snRNP splicing fact 62.7 3.2 6.8E-05 38.3 0.7 48 191-238 83-132 (260)
215 KOG4483 Uncharacterized conser 62.1 28 0.00061 34.3 7.0 65 3-73 379-445 (528)
216 TIGR02542 B_forsyth_147 Bacter 59.3 33 0.00071 27.8 5.7 85 21-126 10-97 (145)
217 KOG4365 Uncharacterized conser 55.6 2.6 5.7E-05 41.7 -1.2 78 13-91 2-80 (572)
218 KOG2891 Surface glycoprotein [ 54.8 5 0.00011 37.4 0.6 31 188-218 173-209 (445)
219 PF04847 Calcipressin: Calcipr 51.2 21 0.00045 31.7 3.9 42 189-237 8-52 (184)
220 PF03467 Smg4_UPF3: Smg-4/UPF3 50.5 15 0.00033 32.2 3.0 59 176-235 7-74 (176)
221 PF02714 DUF221: Domain of unk 49.4 30 0.00065 33.3 5.2 55 58-124 1-55 (325)
222 KOG4019 Calcineurin-mediated s 47.3 13 0.00028 32.6 1.9 72 15-91 11-88 (193)
223 KOG2295 C2H2 Zn-finger protein 47.0 3.5 7.6E-05 42.0 -1.8 70 13-82 230-300 (648)
224 KOG2943 Predicted glyoxalase [ 44.9 1.3E+02 0.0027 27.9 7.8 74 7-80 145-238 (299)
225 KOG2891 Surface glycoprotein [ 43.8 59 0.0013 30.5 5.7 107 24-136 47-194 (445)
226 KOG0943 Predicted ubiquitin-pr 43.1 6 0.00013 44.1 -0.9 30 365-394 2606-2635(3015)
227 PF15513 DUF4651: Domain of un 42.7 58 0.0013 23.4 4.3 18 29-46 9-26 (62)
228 PF08952 DUF1866: Domain of un 40.8 55 0.0012 27.8 4.6 39 191-235 51-89 (146)
229 KOG3424 40S ribosomal protein 40.3 61 0.0013 26.4 4.6 46 24-70 33-84 (132)
230 KOG2135 Proteins containing th 40.1 11 0.00025 37.7 0.6 51 179-233 375-426 (526)
231 KOG4213 RNA-binding protein La 39.9 35 0.00075 30.0 3.4 36 39-74 132-169 (205)
232 PF07530 PRE_C2HC: Associated 39.9 49 0.0011 24.1 3.8 63 29-94 2-66 (68)
233 PF15063 TC1: Thyroid cancer p 35.3 21 0.00045 26.5 1.1 33 4-41 20-52 (79)
234 smart00596 PRE_C2HC PRE_C2HC d 35.3 62 0.0013 23.8 3.6 63 29-94 2-66 (69)
235 KOG4285 Mitotic phosphoprotein 34.7 41 0.0009 32.0 3.3 41 191-237 211-253 (350)
236 PF15513 DUF4651: Domain of un 34.5 45 0.00098 23.9 2.7 19 191-209 9-27 (62)
237 PF11411 DNA_ligase_IV: DNA li 33.6 30 0.00065 21.9 1.5 19 184-202 17-35 (36)
238 PF08544 GHMP_kinases_C: GHMP 33.6 1.2E+02 0.0026 22.2 5.3 44 29-76 37-80 (85)
239 KOG2416 Acinus (induces apopto 31.4 17 0.00037 37.6 0.2 63 174-240 442-505 (718)
240 COG2004 RPS24A Ribosomal prote 29.8 2.8E+02 0.0062 22.2 6.8 48 21-69 27-80 (107)
241 cd04880 ACT_AAAH-PDT-like ACT 29.5 2.2E+02 0.0047 20.5 6.7 51 26-76 11-65 (75)
242 PF07235 DUF1427: Protein of u 29.2 19 0.00041 27.6 0.1 26 368-393 38-74 (90)
243 PRK05738 rplW 50S ribosomal pr 28.3 1.3E+02 0.0028 23.4 4.6 36 15-50 20-57 (92)
244 cd04905 ACT_CM-PDT C-terminal 27.8 2.5E+02 0.0053 20.6 6.7 51 27-77 14-68 (80)
245 COG4317 Uncharacterized protei 26.9 20 0.00043 27.1 -0.2 14 368-381 39-52 (93)
246 PF07292 NID: Nmi/IFP 35 domai 26.6 32 0.00069 26.6 0.9 22 14-35 52-73 (88)
247 PRK01178 rps24e 30S ribosomal 25.8 1.8E+02 0.0039 23.0 5.0 46 24-70 29-80 (99)
248 PF03439 Spt5-NGN: Early trans 24.3 1.1E+02 0.0023 23.2 3.5 35 40-78 33-67 (84)
249 COG0089 RplW Ribosomal protein 24.0 1.2E+02 0.0025 23.8 3.6 42 14-55 20-63 (94)
250 KOG1295 Nonsense-mediated deca 23.6 82 0.0018 31.0 3.3 69 12-80 5-77 (376)
251 PRK11901 hypothetical protein; 23.0 1.8E+02 0.0039 28.2 5.4 53 23-77 251-306 (327)
252 cd04908 ACT_Bt0572_1 N-termina 22.2 2.8E+02 0.0061 19.3 8.4 45 27-74 14-59 (66)
253 COG5193 LHP1 La protein, small 22.1 37 0.0008 33.6 0.7 59 15-73 175-244 (438)
254 KOG0156 Cytochrome P450 CYP2 s 22.1 1.5E+02 0.0033 30.5 5.2 62 15-85 33-97 (489)
255 PF01282 Ribosomal_S24e: Ribos 22.0 3.6E+02 0.0078 20.5 6.1 45 24-69 11-61 (84)
256 PRK11230 glycolate oxidase sub 21.9 2.2E+02 0.0048 29.5 6.3 49 28-76 203-255 (499)
257 PF05015 Plasmid_killer: Plasm 21.6 92 0.002 24.1 2.7 44 354-397 33-77 (93)
258 PTZ00071 40S ribosomal protein 21.4 2.3E+02 0.0051 23.6 5.1 45 24-69 34-85 (132)
259 PF00276 Ribosomal_L23: Riboso 21.3 2.9E+02 0.0063 21.3 5.4 51 16-66 21-84 (91)
260 PF14893 PNMA: PNMA 21.2 85 0.0018 30.6 2.9 24 14-37 18-41 (331)
261 cd00187 TOP4c DNA Topoisomeras 20.9 4.9E+02 0.011 26.5 8.4 61 14-75 225-289 (445)
262 PF00403 HMA: Heavy-metal-asso 20.2 3E+02 0.0064 18.8 5.6 54 16-74 1-58 (62)
263 PF08156 NOP5NT: NOP5NT (NUC12 20.1 34 0.00074 24.9 -0.0 38 29-76 27-65 (67)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.4e-62 Score=506.75 Aligned_cols=238 Identities=44% Similarity=0.746 Sum_probs=214.7
Q ss_pred CCCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 1 m~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
|||+||++.++++.++|||+|||.++|+++|+++|+.||.|++|+|.+|.+|+++|||||+|++.++|++||+++||..+
T Consensus 75 ~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 75 MWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeeeccccccccc-ccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc-------------
Q 039806 81 ERMELYVGPFIRRADRI-QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------- 146 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~~~-~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf------------- 146 (398)
+|+.|+|..+.++.++. .....+++|||+||+.++|+++|+++|+.||.|+++++++|.+|+++||
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~ 234 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAK 234 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHH
Confidence 99999999888777763 2233789999999999999999999999999999999999988988887
Q ss_pred ----------C----CchhhhHHHHHHHHHHHHHHHHHHHhhh-------hhhccccCCCcccCHHHHHHHhhcCCCeEE
Q 039806 147 ----------G----SKVLYVARAQKKAERKAILRAQFERMRK-------ERAELYKNINDEVDEIELKQYFSQCGTISS 205 (398)
Q Consensus 147 ----------~----~~~l~v~~a~~k~~~~~~~~~~~~~~~~-------~~~~~v~nL~~~vtee~L~~~F~~fG~I~s 205 (398)
. +..++|.++.++.++..+++..+..... ...++|+||++++|+++|+++|++||.|++
T Consensus 235 Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~ 314 (562)
T TIGR01628 235 AVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITS 314 (562)
T ss_pred HHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEE
Confidence 3 6667788888887777666666554333 345888999999999999999999999999
Q ss_pred EEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 206 VKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 206 vki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
|+|++|.+|.++|| ||+|++.++|.+|+.+++.
T Consensus 315 ~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g 348 (562)
T TIGR01628 315 AKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG 348 (562)
T ss_pred EEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC
Confidence 99999999999999 9999999999999876553
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9e-38 Score=306.60 Aligned_cols=224 Identities=29% Similarity=0.389 Sum_probs=182.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..+|||+|||.++|+++|+++|+.||+|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5799999999999999999999999999999999998 899999999999999999999999999999999999998865
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCch---------------------
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKV--------------------- 150 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~--------------------- 150 (398)
+... ...++|||+|||.++++++|+++|+.||.|..++++.+.. +.++||+...
T Consensus 83 ~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 83 SSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4432 2467899999999999999999999999999999998874 7788883211
Q ss_pred ----hhhHHHHHHHHH--HHHHH-----------------------------------------------H---------
Q 039806 151 ----LYVARAQKKAER--KAILR-----------------------------------------------A--------- 168 (398)
Q Consensus 151 ----l~v~~a~~k~~~--~~~~~-----------------------------------------------~--------- 168 (398)
+.|.++...... ..... .
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 222221100000 00000 0
Q ss_pred ----HH-------------------HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEe
Q 039806 169 ----QF-------------------ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAI 223 (398)
Q Consensus 169 ----~~-------------------~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f 223 (398)
.. ........++|+||++++++++|+++|++||.|++|+|++|. +|.+||| ||.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 00 000011248899999999999999999999999999999998 9999999 9999
Q ss_pred cccHHHHHHHHHHhcccc
Q 039806 224 AQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 224 ~~~~ea~~A~l~~q~~q~ 241 (398)
.+.++|.+|+..++....
T Consensus 319 ~~~~~A~~Ai~~lnG~~~ 336 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTL 336 (352)
T ss_pred CCHHHHHHHHHHhCCCEE
Confidence 999999999999887553
No 3
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-38 Score=304.49 Aligned_cols=230 Identities=41% Similarity=0.667 Sum_probs=210.1
Q ss_pred CCCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 1 m~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
|||+|||+. |||+||++++|.++|+++|+.||+|+||||.+|.+| |||| ||+|+++++|++||+.+||+.+
T Consensus 70 m~s~rd~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 70 MWSQRDPSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred ehhccCCce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 999999999 999999999999999999999999999999999999 9999 9999999999999999999999
Q ss_pred cceEeeeecccccccccccCC----CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc----------
Q 039806 81 ERMELYVGPFIRRADRIQEGS----SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF---------- 146 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~~~~~~~----~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf---------- 146 (398)
.|++|+|..+.++.+|..... ..++++|+|++.+++++.|.++|+.||.|+++.++.+..++++||
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 999999999999888754332 688999999999999999999999999999999999999888888
Q ss_pred -------------CCchhhhHHHHHHHHHHHHHHHHHHHhhh-------hhhccccCCCcccCHHHHHHHhhcCCCeEEE
Q 039806 147 -------------GSKVLYVARAQKKAERKAILRAQFERMRK-------ERAELYKNINDEVDEIELKQYFSQCGTISSV 206 (398)
Q Consensus 147 -------------~~~~l~v~~a~~k~~~~~~~~~~~~~~~~-------~~~~~v~nL~~~vtee~L~~~F~~fG~I~sv 206 (398)
++..++|.+++++.++...++..+..... ...++++||+..++++.|++.|+.||+|+++
T Consensus 221 a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~ 300 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSA 300 (369)
T ss_pred HHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeE
Confidence 46678999999988888888876654433 3456779999999999999999999999999
Q ss_pred EEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 207 KIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 207 ki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
+|+.+..|+++|| ||+|.+.++|.+|...+...
T Consensus 301 kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~ 334 (369)
T KOG0123|consen 301 KVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR 334 (369)
T ss_pred EEEeccCCCccceEEEEcCCHHHHHHHHHhhChh
Confidence 9999999999999 99999999999996655543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-36 Score=316.21 Aligned_cols=224 Identities=25% Similarity=0.416 Sum_probs=185.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
.+|||+|||.++||++|+++|+.||.|.+|+|.+|. +++++|||||+|.+.++|++||+.+|+..|+|+.|+|.++.+.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999999 7999999999999999999999999999999999999997643
Q ss_pred ccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHH--------
Q 039806 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI-------- 165 (398)
Q Consensus 94 ~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~-------- 165 (398)
... .....++|||+||+.++|+++|+++|+.||.|.+|++..|.+|+++||+...+.-..+..++.....
T Consensus 81 ~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 81 PSL--RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKE 158 (562)
T ss_pred ccc--cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCce
Confidence 322 1124578999999999999999999999999999999999999999996444333322222211100
Q ss_pred -----HHHH----HHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 166 -----LRAQ----FERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 166 -----~~~~----~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
.... .......+.++|+||+.++|+++|+++|++||.|++|+|++|.+|+++|| ||.|++.++|.+|+..
T Consensus 159 i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 159 VYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred EEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 0000 00112234578899999999999999999999999999999999999999 9999999999999976
Q ss_pred Hhccc
Q 039806 236 IMYAK 240 (398)
Q Consensus 236 ~q~~q 240 (398)
++...
T Consensus 239 l~g~~ 243 (562)
T TIGR01628 239 MNGKK 243 (562)
T ss_pred hCCcE
Confidence 65443
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=257.11 Aligned_cols=203 Identities=20% Similarity=0.344 Sum_probs=173.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCee-cceEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATV-ERMELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l-~gk~i~V~~~ 90 (398)
--+.|||+.||.++.|++|..+|++.|.|.+++++.|+ +|.+||||||.|.+.++|++||+.||+..| .||.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 35689999999999999999999999999999999997 999999999999999999999999999988 5899999887
Q ss_pred cccccccccCCCCceEEeeCCCccccHHHHHHHHccCCC-EEEEEEeeCCC--CCccccC--------------------
Q 039806 91 IRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSLVISKDAN--GTSKGFG-------------------- 147 (398)
Q Consensus 91 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~~~i~~d~~--g~s~Gf~-------------------- 147 (398)
. ..++|||+|||.++++|+|.+.+++.++ |++|.|..+.+ .++|||.
T Consensus 162 v----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 162 V----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred e----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 6 4689999999999999999999999876 77887877764 7889993
Q ss_pred -----CchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEE
Q 039806 148 -----SKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMA 222 (398)
Q Consensus 148 -----~~~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~ 222 (398)
+..+.|.||..+.+-. .+....-+.|+|+||+.++|||.|+++|++||.|+.|+.++| -+ ||.
T Consensus 232 ~~klwgn~~tVdWAep~~e~d------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----Ya-FVH 299 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPD------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YA-FVH 299 (506)
T ss_pred ceeecCCcceeeccCcccCCC------hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----ee-EEe
Confidence 3344555554433321 122344567888999999999999999999999999999977 22 999
Q ss_pred ecccHHHHHHHHHHh
Q 039806 223 IAQTKRERTSYLRIM 237 (398)
Q Consensus 223 f~~~~ea~~A~l~~q 237 (398)
|+++++|.+|...+.
T Consensus 300 f~eR~davkAm~~~n 314 (506)
T KOG0117|consen 300 FAEREDAVKAMKETN 314 (506)
T ss_pred ecchHHHHHHHHHhc
Confidence 999999999998543
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=248.02 Aligned_cols=221 Identities=29% Similarity=0.434 Sum_probs=182.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..+|.|.-||...|+|||+.+|...|+|++||+++|+ +|.|-|||||.|.+++||++||..|||..|..|.|+|.++.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4689999999999999999999999999999999999 999999999999999999999999999999999999999887
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccC------------------------
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG------------------------ 147 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~------------------------ 147 (398)
.++.. +..||||++||...|..||+.+|++||.|...+|..|.. |.+||.+
T Consensus 121 Ss~~I----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 121 SSDSI----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred Chhhh----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 65443 567999999999999999999999999998888888874 8888762
Q ss_pred -CchhhhHHHHHHHH--HHHHHHHHH---------------HHh-----------------------------------h
Q 039806 148 -SKVLYVARAQKKAE--RKAILRAQF---------------ERM-----------------------------------R 174 (398)
Q Consensus 148 -~~~l~v~~a~~k~~--~~~~~~~~~---------------~~~-----------------------------------~ 174 (398)
...|.|+++..-.. ..+.+...+ .+. .
T Consensus 197 ~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~ 276 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPG 276 (360)
T ss_pred CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCC
Confidence 12233333321110 001111100 000 0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..-+++|.||..+.+|..|+.+|.+||.|++|||++|- +.++||| ||...+.+||..|+..+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG 342 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 342 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC
Confidence 01246779999999999999999999999999999998 6999999 9999999999999987654
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.6e-32 Score=273.45 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=166.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-ceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-RMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-gk~i~V~~~~~ 92 (398)
.++|||+|||.++||++|+++|++||.|.+|+|++|.+|++||||||+|.+.|+|++||+.||+..|. |+.|.|..+.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~- 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV- 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc-
Confidence 47999999999999999999999999999999999999999999999999999999999999999885 7888776653
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCC-EEEEEEeeCC--CCCccccCCchhhhHHHHHHHHHHHHHHH-
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSLVISKDA--NGTSKGFGSKVLYVARAQKKAERKAILRA- 168 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~~~i~~d~--~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~- 168 (398)
..++|||+|||.++|+++|.+.|++++. ++++.+.... .++++||+...+.-..+..++.+......
T Consensus 137 ---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 137 ---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 3578999999999999999999999964 4555444332 36788996544433333322221110000
Q ss_pred ------------------HHHHhhhhhhccccCCCcccCHHHHHHHhhcC--CCeEEEEEeeCCCCCccce-EEEecccH
Q 039806 169 ------------------QFERMRKERAELYKNINDEVDEIELKQYFSQC--GTISSVKIMRTDRGISKGH-CMAIAQTK 227 (398)
Q Consensus 169 ------------------~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~f--G~I~svki~~d~~g~skGf-fV~f~~~~ 227 (398)
..+.....++++|+||+.++||++|+++|++| |+|++|+++ ++| ||+|++.+
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e 280 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDRE 280 (578)
T ss_pred EecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHH
Confidence 00011224678899999999999999999999 999999987 446 99999999
Q ss_pred HHHHHHHHHhcc
Q 039806 228 RERTSYLRIMYA 239 (398)
Q Consensus 228 ea~~A~l~~q~~ 239 (398)
+|.+|+.+++..
T Consensus 281 ~A~kAi~~lnG~ 292 (578)
T TIGR01648 281 DAVKAMDELNGK 292 (578)
T ss_pred HHHHHHHHhCCC
Confidence 999999876543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.8e-30 Score=262.93 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=167.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh--cCCeecceEeeeeccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL--QGATVERMELYVGPFI 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l--ng~~l~gk~i~V~~~~ 91 (398)
++.|||+|||.++|+++|+++|+.||.|.+|+|++ +||||||+|++.++|++||+.+ |+..|.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 67899999999999999999999999999999986 5689999999999999999864 7899999999999987
Q ss_pred cccccccc--------CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc----------------C
Q 039806 92 RRADRIQE--------GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF----------------G 147 (398)
Q Consensus 92 ~~~~~~~~--------~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf----------------~ 147 (398)
.+...... .....+|||+||++.+|+++|+++|+.||.|.+|.|+++.. ...|| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-VFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC-ceEEEEEECCHHHHHHHHHHhc
Confidence 54322111 11345799999999999999999999999999999988653 33466 1
Q ss_pred Cc-------h----------hhhHHHHHHH----------HHHHHHHH----HHH-------------------------
Q 039806 148 SK-------V----------LYVARAQKKA----------ERKAILRA----QFE------------------------- 171 (398)
Q Consensus 148 ~~-------~----------l~v~~a~~k~----------~~~~~~~~----~~~------------------------- 171 (398)
+. . |.|.++.++. +++..+.. ...
T Consensus 156 g~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (481)
T TIGR01649 156 GADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPL 235 (481)
T ss_pred CCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcc
Confidence 11 1 2222222221 00000000 000
Q ss_pred -----------------------------------HhhhhhhccccCCCc-ccCHHHHHHHhhcCCCeEEEEEeeCCCCC
Q 039806 172 -----------------------------------RMRKERAELYKNIND-EVDEIELKQYFSQCGTISSVKIMRTDRGI 215 (398)
Q Consensus 172 -----------------------------------~~~~~~~~~v~nL~~-~vtee~L~~~F~~fG~I~svki~~d~~g~ 215 (398)
....+.+++|+||++ .+|+++|+++|+.||.|++|+|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--- 312 (481)
T TIGR01649 236 AGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--- 312 (481)
T ss_pred cccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---
Confidence 011345788899997 69999999999999999999999873
Q ss_pred ccce-EEEecccHHHHHHHHHHhccc
Q 039806 216 SKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 216 skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+|| ||+|.+.++|.+|+..++...
T Consensus 313 -~g~afV~f~~~~~A~~Ai~~lng~~ 337 (481)
T TIGR01649 313 -KETALIEMADPYQAQLALTHLNGVK 337 (481)
T ss_pred -CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 678 999999999999998888654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=6.9e-29 Score=252.03 Aligned_cols=224 Identities=22% Similarity=0.327 Sum_probs=172.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +|+++|||||+|.+.++|.+||. |||..|.|+.|.|..+.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 46789999999999999999999999999999999998 89999999999999999999997 89999999999998765
Q ss_pred cccccccc--------CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc----------------
Q 039806 92 RRADRIQE--------GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF---------------- 146 (398)
Q Consensus 92 ~~~~~~~~--------~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf---------------- 146 (398)
....+... ....++|||+||+.++|+++|+++|+.||.|.+|.+.+|.. |+++||
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~ 246 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALE 246 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 44332211 11358899999999999999999999999999999999986 688888
Q ss_pred -------CCchhhhHHHHHHHHH------------------------HHHHHHHH---H---------------------
Q 039806 147 -------GSKVLYVARAQKKAER------------------------KAILRAQF---E--------------------- 171 (398)
Q Consensus 147 -------~~~~l~v~~a~~k~~~------------------------~~~~~~~~---~--------------------- 171 (398)
.++.|.|.++.+.... ...+.... .
T Consensus 247 ~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (457)
T TIGR01622 247 VMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQ 326 (457)
T ss_pred hcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccc
Confidence 3445555553211000 00000000 0
Q ss_pred -------------------------------HhhhhhhccccCCCcccC----------HHHHHHHhhcCCCeEEEEEee
Q 039806 172 -------------------------------RMRKERAELYKNINDEVD----------EIELKQYFSQCGTISSVKIMR 210 (398)
Q Consensus 172 -------------------------------~~~~~~~~~v~nL~~~vt----------ee~L~~~F~~fG~I~svki~~ 210 (398)
.....+++++.||-...+ .++|+++|++||.|++|.|..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~ 406 (457)
T TIGR01622 327 RDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT 406 (457)
T ss_pred ccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC
Confidence 001223445566643333 378999999999999999973
Q ss_pred CCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 211 TDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 211 d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+.|+ ||.|.+.++|.+|+..++..-
T Consensus 407 ---~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 434 (457)
T TIGR01622 407 ---KNSAGKIYLKFSSVDAALAAFQALNGRY 434 (457)
T ss_pred ---CCCceeEEEEECCHHHHHHHHHHhcCcc
Confidence 345677 999999999999999888643
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=6.1e-29 Score=240.86 Aligned_cols=154 Identities=19% Similarity=0.310 Sum_probs=127.5
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
...+..++|||+|||.++|+++|+++|+.||.|.+|+|++|. ++++||||||+|.++++|++||+.||+..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHH
Q 039806 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~ 167 (398)
.++.+..+. ...+
T Consensus 182 ~~a~p~~~~----~~~~--------------------------------------------------------------- 194 (346)
T TIGR01659 182 SYARPGGES----IKDT--------------------------------------------------------------- 194 (346)
T ss_pred ecccccccc----cccc---------------------------------------------------------------
Confidence 886532110 0122
Q ss_pred HHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 168 ~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
+++|.|||.++||++|+++|++||.|++|+|++|. +|++||| ||+|+++++|.+|+.++...
T Consensus 195 ----------~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 195 ----------NLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ----------eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 35556666666666667777777777777777766 7888888 99999999999999987754
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3e-29 Score=242.47 Aligned_cols=223 Identities=24% Similarity=0.370 Sum_probs=186.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
.+|||++||++++.++|.++|+.+|.|..|.++++. ++.++|||||.|.-.||+++|+..+++..+.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999999 8899999999999999999999999999999999999998866
Q ss_pred ccccc-c---------------------CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc-----
Q 039806 94 ADRIQ-E---------------------GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF----- 146 (398)
Q Consensus 94 ~~~~~-~---------------------~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf----- 146 (398)
...+. + +....+|.|.|||+.+.+++|..+|+.||.|.+++|.+..+|+-.||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 53320 0 01256799999999999999999999999999999999989888899
Q ss_pred ------------------CCchhhhHHHHHHHHHHH--------HH--------HH------------------------
Q 039806 147 ------------------GSKVLYVARAQKKAERKA--------IL--------RA------------------------ 168 (398)
Q Consensus 147 ------------------~~~~l~v~~a~~k~~~~~--------~~--------~~------------------------ 168 (398)
+|+.+.|.||..+..-+. .. ..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 456666666543321100 00 00
Q ss_pred ------------------HH---------------------HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEe
Q 039806 169 ------------------QF---------------------ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIM 209 (398)
Q Consensus 169 ------------------~~---------------------~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~ 209 (398)
.. +....+.++||+||++++||++|.++|++||.|.++.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 000012467889999999999999999999999999999
Q ss_pred eCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 210 RTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 210 ~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
.++ +|.++|. ||.|.+..++..++..+.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 998 9999999 999999999999998763
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.6e-29 Score=252.89 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=169.4
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~~~ 90 (398)
...+|||+||+.++|+++|+++|+.||.|++|+|.++. .+|+|||+|++.++|.+|++.|||..|.+ ..|+|.++
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 34589999999999999999999999999999998865 34799999999999999999999999965 46777665
Q ss_pred cccc--------------------ccc----------cc-----------------------------------------
Q 039806 91 IRRA--------------------DRI----------QE----------------------------------------- 99 (398)
Q Consensus 91 ~~~~--------------------~~~----------~~----------------------------------------- 99 (398)
.... ++. ..
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 5211 000 00
Q ss_pred --------------------CCCCceEEeeCCCc-cccHHHHHHHHccCCCEEEEEEeeCCCCCcccc------------
Q 039806 100 --------------------GSSFNNLYVKNLDD-DMTEEILVEKFSEFGKITSLVISKDANGTSKGF------------ 146 (398)
Q Consensus 100 --------------------~~~~~~lfV~nLp~-~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf------------ 146 (398)
....++|||+||++ .+|+++|+++|+.||.|.+|+++++.. ..||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~--g~afV~f~~~~~A~~A 329 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK--ETALIEMADPYQAQLA 329 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--CEEEEEECCHHHHHHH
Confidence 01346899999998 699999999999999999999998742 2233
Q ss_pred ---------CCchhhhHHHHHHHHHHHH-------HH--HHHHH-----------------hhhhhhccccCCCcccCHH
Q 039806 147 ---------GSKVLYVARAQKKAERKAI-------LR--AQFER-----------------MRKERAELYKNINDEVDEI 191 (398)
Q Consensus 147 ---------~~~~l~v~~a~~k~~~~~~-------~~--~~~~~-----------------~~~~~~~~v~nL~~~vtee 191 (398)
.|+.|+|.++......... .. ..+.. ....++++|+|||.++|++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 4666666654332110000 00 00000 1134578899999999999
Q ss_pred HHHHHhhcCCC--eEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 192 ELKQYFSQCGT--ISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 192 ~L~~~F~~fG~--I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
+|+++|+.||. |++|+++.+.++ ++|| ||+|.+.++|.+|+..++....
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 99999999998 899999865544 4677 9999999999999999987654
No 13
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7e-29 Score=241.72 Aligned_cols=209 Identities=28% Similarity=0.433 Sum_probs=182.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
..|||+ +++|+..|+++|+.+|.|++++|.+|. + |-|||||.|.++++|++||+++|...+.|++|+|-|+.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468999 999999999999999999999999999 6 99999999999999999999999999999999999987543
Q ss_pred cccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc----------------------CCchhh
Q 039806 95 DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF----------------------GSKVLY 152 (398)
Q Consensus 95 ~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf----------------------~~~~l~ 152 (398)
+-+||+||++++|..+|.++|+.||+|.||++..|.+| ++|| .++.++
T Consensus 77 ---------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 77 ---------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGYFVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred ---------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceeeEEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 22999999999999999999999999999999999998 8887 455566
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHH
Q 039806 153 VARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERT 231 (398)
Q Consensus 153 v~~a~~k~~~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~ 231 (398)
|+....+.++.+.... ........+++|+..+++++.|.++|+.||.|+++.|+++..|+++|| ||.|++.++|.+
T Consensus 147 vg~~~~~~er~~~~~~---~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~ 223 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGE---YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKK 223 (369)
T ss_pred Eeeccchhhhcccccc---hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHH
Confidence 6666655555433322 223334566799999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhcccc
Q 039806 232 SYLRIMYAKQ 241 (398)
Q Consensus 232 A~l~~q~~q~ 241 (398)
|...+.....
T Consensus 224 av~~l~~~~~ 233 (369)
T KOG0123|consen 224 AVETLNGKIF 233 (369)
T ss_pred HHHhccCCcC
Confidence 9988876543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.9e-29 Score=234.57 Aligned_cols=133 Identities=29% Similarity=0.430 Sum_probs=122.0
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCC-eecc--eEee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGA-TVER--MELY 86 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~-~l~g--k~i~ 86 (398)
..+.-++||+-+|+.++|+||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+|++. .|-| ..|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3566789999999999999999999999999999999999 9999999999999999999999999876 4544 7899
Q ss_pred eecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc
Q 039806 87 VGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF 146 (398)
Q Consensus 87 V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf 146 (398)
|++++...+|.. ..++|||+-|++.+||.|++++|++||.|++|.|++|.++.|||+
T Consensus 111 vk~Ad~E~er~~---~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc 167 (510)
T KOG0144|consen 111 VKYADGERERIV---EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC 167 (510)
T ss_pred ecccchhhhccc---cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce
Confidence 999887766642 357899999999999999999999999999999999999999999
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.3e-28 Score=217.28 Aligned_cols=192 Identities=21% Similarity=0.369 Sum_probs=152.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.+-++|||+||+.+|||+-|..+|+..|.|.+|||+.| +|+|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 34579999999999999999999999999999999876 34454544
Q ss_pred ccccccccCC-CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc-----------------------
Q 039806 92 RRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF----------------------- 146 (398)
Q Consensus 92 ~~~~~~~~~~-~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf----------------------- 146 (398)
.......... ..-.+||+.|..+++.|+|++.|.+||+|.+++|++|.. ++||||
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 3322222221 356799999999999999999999999999999999986 999999
Q ss_pred CCchhhhHHHHHHHHHHHHHHH----HHHHhhhhh-hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-E
Q 039806 147 GSKVLYVARAQKKAERKAILRA----QFERMRKER-AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-C 220 (398)
Q Consensus 147 ~~~~l~v~~a~~k~~~~~~~~~----~~~~~~~~~-~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-f 220 (398)
+++.|...||.+|..+...... -+.+....+ +++++||...++|++||+.|++||.|.+|+|++| +|| |
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaF 204 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAF 204 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEE
Confidence 4556666666666533222222 233344444 4555999999999999999999999999999966 899 9
Q ss_pred EEecccHHHHHHHHHHhccccC
Q 039806 221 MAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 221 V~f~~~~ea~~A~l~~q~~q~~ 242 (398)
|.|.++|.|.+|+.++......
T Consensus 205 VrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 205 VRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred EEecchhhHHHHHHHhcCceeC
Confidence 9999999999999998876543
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=240.17 Aligned_cols=135 Identities=25% Similarity=0.479 Sum_probs=120.2
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+..++|||+||+.++|+++|+++|+.||.|.+|+|+.|+ +|++||||||+|++.++|++||+.|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356799999999999999999999999999999999998 9999999999999999999999999999999999999865
Q ss_pred cccccc-------cccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc
Q 039806 91 IRRADR-------IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF 146 (398)
Q Consensus 91 ~~~~~~-------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf 146 (398)
...... ..+....++|||+||+.++++++|+++|+.||.|++++|.+|.. ++++||
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGf 248 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY 248 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCe
Confidence 432211 11112568999999999999999999999999999999999986 788888
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.9e-28 Score=248.43 Aligned_cols=224 Identities=19% Similarity=0.228 Sum_probs=161.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhcc------------CCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKF------------GDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT 79 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~------------G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~ 79 (398)
...++|||+|||.++|+++|.++|+.+ +.|.+|.+ +.++|||||+|.+.|+|..||+ |||..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 346789999999999999999999975 23444444 3468999999999999999995 99999
Q ss_pred ecceEeeeeccccccccc-----------------c--------cCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEE
Q 039806 80 VERMELYVGPFIRRADRI-----------------Q--------EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134 (398)
Q Consensus 80 l~gk~i~V~~~~~~~~~~-----------------~--------~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~ 134 (398)
|.|+.|+|.......... . .....++|||+|||..+|+++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999997543221000 0 011357899999999999999999999999999999
Q ss_pred EeeCCC-CCccccCCch-----------------------hhhHHHHHHHHH-----HH------HHHHHHH------Hh
Q 039806 135 ISKDAN-GTSKGFGSKV-----------------------LYVARAQKKAER-----KA------ILRAQFE------RM 173 (398)
Q Consensus 135 i~~d~~-g~s~Gf~~~~-----------------------l~v~~a~~k~~~-----~~------~~~~~~~------~~ 173 (398)
+++|.. |.++||+... |.|.++...... .. ....... ..
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 999874 8899984322 333222110000 00 0000000 01
Q ss_pred hhhhhccccCCCcc----------cCHHHHHHHhhcCCCeEEEEEeeCC----CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 174 RKERAELYKNINDE----------VDEIELKQYFSQCGTISSVKIMRTD----RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 174 ~~~~~~~v~nL~~~----------vtee~L~~~F~~fG~I~svki~~d~----~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
...+++++.||... ...++|+++|++||.|++|+|+++. ++..+|| ||.|++.++|.+|+.+++.
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 12345666777532 1236899999999999999999763 3556787 9999999999999999886
Q ss_pred ccc
Q 039806 239 AKQ 241 (398)
Q Consensus 239 ~q~ 241 (398)
...
T Consensus 487 r~~ 489 (509)
T TIGR01642 487 RKF 489 (509)
T ss_pred CEE
Confidence 553
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.9e-24 Score=192.09 Aligned_cols=136 Identities=31% Similarity=0.543 Sum_probs=121.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..-|||+.|...|+.++|++.|..||+|.++||++|. +++|||||||.|.+.++|++||..+||..|.+|.|+-.|+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4469999999999999999999999999999999999 999999999999999999999999999999999999999998
Q ss_pred ccccccc------------CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhH
Q 039806 93 RADRIQE------------GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVA 154 (398)
Q Consensus 93 ~~~~~~~------------~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~ 154 (398)
|..+... ....++|||+|++..+||++|++.|+.||.|.+|+|.+|+ ||.+..+...
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----GYaFVrF~tk 210 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----GYAFVRFETK 210 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----ceEEEEecch
Confidence 8754221 1267889999999999999999999999999999999884 6654333333
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=194.94 Aligned_cols=133 Identities=26% Similarity=0.495 Sum_probs=119.4
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
.|+|||+.+.+++.|+.|+..|..||.|.+|.+..|+ ++++||||||+|+-+|.|+-|++.+||..++||.|+|+....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999 999999999999999999999999999999999999985432
Q ss_pred cccc-------cccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc
Q 039806 93 RADR-------IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF 146 (398)
Q Consensus 93 ~~~~-------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf 146 (398)
-..- ..+..++++|||..+..+.+|+||+.+|+.||+|.+|.+-++.+ +..|||
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGy 254 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY 254 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccce
Confidence 1110 11223789999999999999999999999999999999999997 667887
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=6.5e-22 Score=191.85 Aligned_cols=223 Identities=22% Similarity=0.360 Sum_probs=165.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
.-+|.|+|||+++.+.+|..+|+.||.|.+|.|++..+|+-.|||||+|.+..+|..||+.+|+..|.|++|-|.|+..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45899999999999999999999999999999998889988899999999999999999999999999999999998743
Q ss_pred ccc-------------------------------------------c--c---------------------cC-C-----
Q 039806 94 ADR-------------------------------------------I--Q---------------------EG-S----- 101 (398)
Q Consensus 94 ~~~-------------------------------------------~--~---------------------~~-~----- 101 (398)
..- + . .. +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 300 0 0 00 0
Q ss_pred --------------CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc--------------------
Q 039806 102 --------------SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF-------------------- 146 (398)
Q Consensus 102 --------------~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf-------------------- 146 (398)
-..+|||.|||+++||++|.+.|++||.|..+.|+.+++ +.++|.
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 014599999999999999999999999999999999986 888876
Q ss_pred ---------CCchhhhHHHHHHHHHHHH-HH--------------------------------------HHH----HHhh
Q 039806 147 ---------GSKVLYVARAQKKAERKAI-LR--------------------------------------AQF----ERMR 174 (398)
Q Consensus 147 ---------~~~~l~v~~a~~k~~~~~~-~~--------------------------------------~~~----~~~~ 174 (398)
.|+.|.|..|..+.+.... .+ ..+ ....
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 2333444333222211111 00 000 0000
Q ss_pred h-------hhhccccCCCcccCHHHHHHHhhc----C-CCe-EEEEEeeCC----CCCccce-EEEecccHHHHHHHHHH
Q 039806 175 K-------ERAELYKNINDEVDEIELKQYFSQ----C-GTI-SSVKIMRTD----RGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 175 ~-------~~~~~v~nL~~~vtee~L~~~F~~----f-G~I-~svki~~d~----~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
. -+.+.|.|||..+++..|..+.-. | +.+ ..|+.+++. .+.+.|| |+.|...+.|.+|..-.
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 0 123556999999999999888743 3 333 335666654 4556777 99999999988886544
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=2.4e-22 Score=197.26 Aligned_cols=138 Identities=28% Similarity=0.439 Sum_probs=117.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeeeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYVGP 89 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~~ 89 (398)
..++|||+|||.++++++|+++|+.||.|..+++..+. ++.++|||||+|++.++|++||+.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998 88999999999999999999999999998877 6788877
Q ss_pred ccccccccc---------------c-------------------------------------------------------
Q 039806 90 FIRRADRIQ---------------E------------------------------------------------------- 99 (398)
Q Consensus 90 ~~~~~~~~~---------------~------------------------------------------------------- 99 (398)
+........ .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 653321000 0
Q ss_pred ------------------CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC-CCCccccCCch
Q 039806 100 ------------------GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKV 150 (398)
Q Consensus 100 ------------------~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~-~g~s~Gf~~~~ 150 (398)
.....+|||+|||+++++++|+++|++||.|++++|++|. ++.++||+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEE
Confidence 0012269999999999999999999999999999999998 59999997443
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=2.9e-22 Score=169.83 Aligned_cols=136 Identities=28% Similarity=0.421 Sum_probs=121.4
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
...+...+|||+||+..++++-|+++|-+.|+|+++++.+|. +...+|||||+|.++|+|+-||+-||...|.||+|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 345567899999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred ecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEE-EEEeeCCC-CCccccC
Q 039806 88 GPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS-LVISKDAN-GTSKGFG 147 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-~~i~~d~~-g~s~Gf~ 147 (398)
..+.... .......++||+||.++++|.-|.+.|+.||.+.+ -.+++|.+ |.++||+
T Consensus 84 ~kas~~~---~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g 142 (203)
T KOG0131|consen 84 NKASAHQ---KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFG 142 (203)
T ss_pred Eeccccc---ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCe
Confidence 9887221 12225689999999999999999999999999876 47889987 8888885
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.84 E-value=3.4e-21 Score=196.28 Aligned_cols=187 Identities=21% Similarity=0.236 Sum_probs=140.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEEcC--CCCceeEEEEEecCHHHHHHHHHHhcC--CeecceEeee
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIEKLQG--ATVERMELYV 87 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng--~~l~gk~i~V 87 (398)
+.++|||+|||.++|+++|++.|++++. ++++.+.... .++++|||||+|++.++|..|+++|+. ..++|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4679999999999999999999999874 5555544332 578899999999999999999998864 4688999999
Q ss_pred ecccccccccccC-CCCceEEeeCCCccccHHHHHHHHccC--CCEEEEEEeeCCCCCcccc------------------
Q 039806 88 GPFIRRADRIQEG-SSFNNLYVKNLDDDMTEEILVEKFSEF--GKITSLVISKDANGTSKGF------------------ 146 (398)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~lfV~nLp~~~tee~L~~~F~~f--G~I~~~~i~~d~~g~s~Gf------------------ 146 (398)
.++.++.+...+. ...++|||+||++++|+++|+++|+.| |+|++|.++++ .+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-----fAFVeF~s~e~A~kAi~~lnG 291 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-----YAFVHFEDREDAVKAMDELNG 291 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-----eEEEEeCCHHHHHHHHHHhCC
Confidence 9988765443222 256789999999999999999999999 99999987754 233
Q ss_pred ---CCchhhhHHHHHHHHHHHH--------------HHH-HH--HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeE
Q 039806 147 ---GSKVLYVARAQKKAERKAI--------------LRA-QF--ERMRKERAELYKNINDEVDEIELKQYFSQCGTIS 204 (398)
Q Consensus 147 ---~~~~l~v~~a~~k~~~~~~--------------~~~-~~--~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~ 204 (398)
+++.|.|.++..+....-. .+. .+ .......++.+.|+++..+++.+.++|..+|.|.
T Consensus 292 ~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 292 KELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 4555666655432211000 000 00 0011345678899999999999999999999854
No 24
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.9e-20 Score=165.31 Aligned_cols=236 Identities=21% Similarity=0.240 Sum_probs=154.6
Q ss_pred CCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC-eecc-
Q 039806 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA-TVER- 82 (398)
Q Consensus 5 rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~-~l~g- 82 (398)
-|++.|..+.++|||+-|.+.-.|||++.+|..||.|.+|.+.+..+|.|||+|||.|.+.-+|+.||..|+|. .+-|
T Consensus 10 adsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 10 ADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred cccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 36667777889999999999999999999999999999999999999999999999999999999999999997 3333
Q ss_pred -eEeeeecccccccccccCC----------CCceEEe-----------------------eCCCccccHH----HHHHHH
Q 039806 83 -MELYVGPFIRRADRIQEGS----------SFNNLYV-----------------------KNLDDDMTEE----ILVEKF 124 (398)
Q Consensus 83 -k~i~V~~~~~~~~~~~~~~----------~~~~lfV-----------------------~nLp~~~tee----~L~~~F 124 (398)
..+.|++++..+||....- +.-.+-+ .-|...++.. +....+
T Consensus 90 SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~ 169 (371)
T KOG0146|consen 90 SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAAL 169 (371)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHH
Confidence 6788999887777632110 0000101 1122222211 111223
Q ss_pred ccCCCEEEEEEeeCCC----C-------------Ccccc-------CC----chhhhH-------------------HHH
Q 039806 125 SEFGKITSLVISKDAN----G-------------TSKGF-------GS----KVLYVA-------------------RAQ 157 (398)
Q Consensus 125 ~~fG~I~~~~i~~d~~----g-------------~s~Gf-------~~----~~l~v~-------------------~a~ 157 (398)
+--|-+..-++..... + .-.|| ++ ..+|-+ .+.
T Consensus 170 ~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g 249 (371)
T KOG0146|consen 170 NANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAG 249 (371)
T ss_pred hhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhh
Confidence 3222221111110000 0 01222 00 001000 000
Q ss_pred HHHHH------HHHHH----------HHHHHhh-hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce
Q 039806 158 KKAER------KAILR----------AQFERMR-KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH 219 (398)
Q Consensus 158 ~k~~~------~~~~~----------~~~~~~~-~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf 219 (398)
..... ...+. ....++. ..+.++|..||.+..|.+|...|-+||.|+|.||+.|. ++.||+|
T Consensus 250 ~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 250 VQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccce
Confidence 00000 00000 0111222 24567889999999999999999999999999999999 9999999
Q ss_pred -EEEecccHHHHHHHHHHhccc
Q 039806 220 -CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 220 -fV~f~~~~ea~~A~l~~q~~q 240 (398)
||.|++...+..|+.++..-|
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQ 351 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQ 351 (371)
T ss_pred eeEecCCchhHHHHHHHhcchh
Confidence 999999999999998876554
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.6e-19 Score=160.85 Aligned_cols=145 Identities=29% Similarity=0.428 Sum_probs=122.1
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc--e
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER--M 83 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k 83 (398)
|+...-...+|||.+||+..|.+||+++|+.||.|...+|+.|. +|.|||.|||.|+..++|+.||+.|||..-.| .
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~te 199 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTE 199 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCC
Confidence 44444456799999999999999999999999999999999999 99999999999999999999999999987765 5
Q ss_pred Eeeeeccccccccc--------------------------c---------------------------------cCCCCc
Q 039806 84 ELYVGPFIRRADRI--------------------------Q---------------------------------EGSSFN 104 (398)
Q Consensus 84 ~i~V~~~~~~~~~~--------------------------~---------------------------------~~~~~~ 104 (398)
+|.|+.+...+... . ......
T Consensus 200 pItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ 279 (360)
T KOG0145|consen 200 PITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGW 279 (360)
T ss_pred CeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCee
Confidence 68886665221100 0 000236
Q ss_pred eEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchh
Q 039806 105 NLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVL 151 (398)
Q Consensus 105 ~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l 151 (398)
+|||.||..+++|.-|..+|.+||.|++++|++|-+ .++|||++..+
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtM 327 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTM 327 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEe
Confidence 799999999999999999999999999999999987 99999976554
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=9.8e-20 Score=172.48 Aligned_cols=146 Identities=23% Similarity=0.321 Sum_probs=121.3
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhhHHHHHHHHHHHHHHH------------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERKAILRA------------ 168 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v~~a~~k~~~~~~~~~------------ 168 (398)
+.-++||+.+|..++|.||+++|++||.|.+|.|++|+. +.++|+.+.+.+...+..+....--...
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 567899999999999999999999999999999999995 9999997666665554444332111000
Q ss_pred --HHHHhh--hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccccCC
Q 039806 169 --QFERMR--KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQGP 243 (398)
Q Consensus 169 --~~~~~~--~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~~~ 243 (398)
..++++ .+++++|+-|+..+||.+++++|++||.|++|.|++|+.|.|||| ||.|.+++-|..|+..++..+.+.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 112222 378899999999999999999999999999999999999999999 999999999999999999998877
Q ss_pred CCCC
Q 039806 244 GLAS 247 (398)
Q Consensus 244 ~~~~ 247 (398)
+.-.
T Consensus 193 Gcs~ 196 (510)
T KOG0144|consen 193 GCSQ 196 (510)
T ss_pred cCCC
Confidence 6633
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=163.64 Aligned_cols=112 Identities=27% Similarity=0.447 Sum_probs=104.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ ||||+.++...|+.||.+|||-.|+|..|.|+.++.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 46999999999999999999999999999999764 99999999999999999999999999999999988763
Q ss_pred cccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC
Q 039806 95 DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA 139 (398)
Q Consensus 95 ~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~ 139 (398)
. ..++|+|+||.+.++.+||+..|.+||.|.+|.|.+|-
T Consensus 76 k------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy 114 (346)
T KOG0109|consen 76 K------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY 114 (346)
T ss_pred C------CccccccCCCCccccCHHHhhhhcccCCceeeeeecce
Confidence 2 47899999999999999999999999999999999874
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=2.7e-19 Score=182.77 Aligned_cols=139 Identities=20% Similarity=0.301 Sum_probs=109.4
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhhHHHHHHHHHH-----------------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERK----------------- 163 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v~~a~~k~~~~----------------- 163 (398)
..++|||+||++++++++|+++|+.||.|.+|++++|.. |+++||++..+....+..++...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 568899999999999999999999999999999999974 99999954443333332222110
Q ss_pred ------HHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 164 ------AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 164 ------~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
.............++++|+||+.++++++|+++|+.||.|++|+|.+|. +|++||| ||+|.+.++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 0000000111234578899999999999999999999999999999997 7889999 9999999999999998
Q ss_pred Hhccc
Q 039806 236 IMYAK 240 (398)
Q Consensus 236 ~q~~q 240 (398)
+....
T Consensus 266 mNg~e 270 (612)
T TIGR01645 266 MNLFD 270 (612)
T ss_pred hCCCe
Confidence 87553
No 29
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=3.6e-19 Score=168.13 Aligned_cols=134 Identities=28% Similarity=0.532 Sum_probs=122.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+.++|||++|+.++|+|.|++.|+.||.|.+|+|++|+ +++++||+||+|++.+...+++.. ..+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 67899999999999999999999999999999999999 999999999999999999999973 5778999999999999
Q ss_pred ccccccccCC--CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccC
Q 039806 92 RRADRIQEGS--SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147 (398)
Q Consensus 92 ~~~~~~~~~~--~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~ 147 (398)
++.+...... ...+|||+.|+.++++++++++|++||.|..+.++.|.+ .+++||+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFg 142 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFG 142 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccce
Confidence 8876644332 467899999999999999999999999999999999986 8899994
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.77 E-value=4.3e-18 Score=175.30 Aligned_cols=127 Identities=23% Similarity=0.382 Sum_probs=106.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...+|||+|||.++|+++|+++|+.||.|..|+|+.+. +|.++|||||+|.+.++|..||+.|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45789999999999999999999999999999999998 99999999999999999999999999999999999998875
Q ss_pred ccccccc------------------------cCCCCceEEeeCCCcc----------ccHHHHHHHHccCCCEEEEEEee
Q 039806 92 RRADRIQ------------------------EGSSFNNLYVKNLDDD----------MTEEILVEKFSEFGKITSLVISK 137 (398)
Q Consensus 92 ~~~~~~~------------------------~~~~~~~lfV~nLp~~----------~tee~L~~~F~~fG~I~~~~i~~ 137 (398)
....... .......|+|.|+... ...++|+++|++||.|++|+|.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 3221100 0013466889998532 12468999999999999999998
Q ss_pred CC
Q 039806 138 DA 139 (398)
Q Consensus 138 d~ 139 (398)
+.
T Consensus 454 ~~ 455 (509)
T TIGR01642 454 PN 455 (509)
T ss_pred cC
Confidence 63
No 31
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=2.9e-18 Score=162.57 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=176.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSK-FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~-~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
.+.+||.|||+++...||+++|.. -|.|..|.++.|.+|++||+|.|+|+++|.+++|+++||...+.|++|.|+....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 345999999999999999999965 8999999999999999999999999999999999999999999999999976432
Q ss_pred ccccccc--CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHH
Q 039806 93 RADRIQE--GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQF 170 (398)
Q Consensus 93 ~~~~~~~--~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~ 170 (398)
....... -..-.+.|+.++...+-...|...|+--|.+....+.+|.+..|++-+..++.-.........---+...+
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 1111100 01456799999999999999999999889888888899999888876433322111111111000011111
Q ss_pred HH------hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 171 ER------MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 171 ~~------~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
.+ .......++.||+..+..+.|++.|.--|.|++|.+-.|+.|.++|| -++|...-+|-.|+..+.-
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 11 12234567899999999999999999999999999999999999999 7789999999999887664
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=8.1e-19 Score=175.62 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=165.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
...-|+|+|||..+..++|.+.|..||.|..+-+. +.|. -++|+|.+..+|+.|++.|+...+..-.+++.++-.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 34679999999999999999999999999988443 5444 399999999999999999999888887777755431
Q ss_pred cc-----------------------ccc----------cc------------CC-CCceEEeeCCCccccHHHHHHHHcc
Q 039806 93 RA-----------------------DRI----------QE------------GS-SFNNLYVKNLDDDMTEEILVEKFSE 126 (398)
Q Consensus 93 ~~-----------------------~~~----------~~------------~~-~~~~lfV~nLp~~~tee~L~~~F~~ 126 (398)
.. ++. .+ .. ..+.|||+||++++|.++|...|..
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 00 000 00 00 2234999999999999999999999
Q ss_pred CCCEEEEEEeeCCCC----CccccCCchhhhHHHHHHHHHHHH---------------------HHHHHHHhhhhhhccc
Q 039806 127 FGKITSLVISKDANG----TSKGFGSKVLYVARAQKKAERKAI---------------------LRAQFERMRKERAELY 181 (398)
Q Consensus 127 fG~I~~~~i~~d~~g----~s~Gf~~~~l~v~~a~~k~~~~~~---------------------~~~~~~~~~~~~~~~v 181 (398)
.|.|.++.|....+. .|.||++..+.-........+.-. ..+..........|+|
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILV 618 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeee
Confidence 999999988766654 366886444333322222211100 0011111122346788
Q ss_pred cCCCcccCHHHHHHHhhcCCCeEEEEEeeC-CCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 182 KNINDEVDEIELKQYFSQCGTISSVKIMRT-DRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 182 ~nL~~~vtee~L~~~F~~fG~I~svki~~d-~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+|||+..+-.+++++|+.||.|.+|+|... ..+.++|| ||.|-+.+||.+|.-++...+
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH 679 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH 679 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence 999999999999999999999999999876 36667999 999999999999998777433
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=1.3e-18 Score=169.86 Aligned_cols=134 Identities=29% Similarity=0.466 Sum_probs=119.5
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++||+--|.-.++.-||+++|+.+|.|.+|.++.|. ++.+||.|||+|.+.++.-.||. |+|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 456788998999999999999999999999999999999 99999999999999999999995 9999999999999887
Q ss_pred cccccccccCC----------CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC-CCCcccc
Q 039806 91 IRRADRIQEGS----------SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGF 146 (398)
Q Consensus 91 ~~~~~~~~~~~----------~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~-~g~s~Gf 146 (398)
...+.+..... +...|||+||.+++||++|+.+|++||.|..+.+.+|. +|.++||
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgf 322 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGF 322 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCc
Confidence 65555422211 34449999999999999999999999999999999998 6999999
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=3.8e-18 Score=145.57 Aligned_cols=83 Identities=29% Similarity=0.549 Sum_probs=78.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..+++|||+||+.++|+++|+++|++||.|.+|+|+.|. +++++|||||+|++.++|++||+.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 446789999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 91 IRRA 94 (398)
Q Consensus 91 ~~~~ 94 (398)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7554
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.9e-17 Score=157.71 Aligned_cols=126 Identities=25% Similarity=0.346 Sum_probs=112.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEEcC--CCCceeEEEEEecCHHHHHHHHHHhc-C-CeecceEeee
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIEKLQ-G-ATVERMELYV 87 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~~d~--~g~skg~aFV~F~~~e~A~~Ai~~ln-g-~~l~gk~i~V 87 (398)
.+++|||+|+|++.++++|.+-|++.+. |++|.|..++ ..++||||||+|++...|..|-.+|- + ..|+|..+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4679999999999999999999999885 8888888887 56899999999999999999998873 3 3789999999
Q ss_pred ecccccccccccCC-CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeC
Q 039806 88 GPFIRRADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD 138 (398)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d 138 (398)
.|+.+..+...+.- +-.-|||+||+.++|||.|+++|+.||.|+.|+..+|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 99999887755432 5677999999999999999999999999999999977
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=5.4e-17 Score=162.66 Aligned_cols=138 Identities=27% Similarity=0.436 Sum_probs=117.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCC----ceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGK----SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~----skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+|||+||+.++|.++|.+.|+..|.|++|.|.+.+++. |.|||||+|.+.++|++|++.|+|+.|+|+.|.|..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999998877553 66999999999999999999999999999999999887
Q ss_pred ccccccc-----cCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhh
Q 039806 92 RRADRIQ-----EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYV 153 (398)
Q Consensus 92 ~~~~~~~-----~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v 153 (398)
.+..... .....++|.|+|||+..+..+++++|..||.|.+|+|.+-.. +.++||++..+..
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 2221111 111457999999999999999999999999999999998743 7788986554443
No 37
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.9e-16 Score=117.74 Aligned_cols=70 Identities=37% Similarity=0.663 Sum_probs=67.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 17 AFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 17 lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
|||+|||.++|+++|+++|+.||.|..|++..+.++.++|||||+|++.++|++|++.+||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999998899999999999999999999999999999999885
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=1.5e-16 Score=161.79 Aligned_cols=139 Identities=24% Similarity=0.249 Sum_probs=108.2
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhhHHHHHHHHHH-----------------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERK----------------- 163 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v~~a~~k~~~~----------------- 163 (398)
..++|||+|||.++|+++|+++|++||.|.+|.+++|.. ++++||+...+.......++...
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 467899999999999999999999999999999999975 88999965444333322222110
Q ss_pred -----HHHHHHH-HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 164 -----AILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 164 -----~~~~~~~-~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
....... ......++++|+||+..+++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 168 EKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV 247 (457)
T ss_pred hhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 0000000 000114678899999999999999999999999999999988 6799999 9999999999999987
Q ss_pred Hhccc
Q 039806 236 IMYAK 240 (398)
Q Consensus 236 ~q~~q 240 (398)
+....
T Consensus 248 l~g~~ 252 (457)
T TIGR01622 248 MNGFE 252 (457)
T ss_pred cCCcE
Confidence 77643
No 39
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.9e-15 Score=134.15 Aligned_cols=83 Identities=25% Similarity=0.361 Sum_probs=79.4
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+++.++|-|.||+.+++|++|.++|..||.|..|.|.+|+ +|.+||||||.|.+.++|.+||+.|||.-++.--|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4578899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 8764
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=5.2e-15 Score=110.36 Aligned_cols=70 Identities=29% Similarity=0.648 Sum_probs=65.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 17 AFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 17 lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
|||+|||.++|+++|.++|+.||.|..+++..++++.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998899999999999999999999999998999999885
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=134.05 Aligned_cols=127 Identities=31% Similarity=0.468 Sum_probs=110.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc-
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI- 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~- 91 (398)
.++|||+|||.++|+++|.++|+.||.|..|++..|. +|+++|||||+|.+.++|..|++.+++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999997 99999999999999999999999999999999999999953
Q ss_pred ---ccccccc----------------cCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC
Q 039806 92 ---RRADRIQ----------------EGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN 140 (398)
Q Consensus 92 ---~~~~~~~----------------~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~ 140 (398)
.+..... .......+++.+++..++++++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 2222220 011567799999999999999999999999996666655543
No 42
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.8e-15 Score=137.21 Aligned_cols=84 Identities=27% Similarity=0.456 Sum_probs=78.6
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.++.-++|+|.|||....+-||+..|.+||+|++|.|+.++.| |||||||.|++.+||++|-++|||..+.||+|.|..
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4566789999999999999999999999999999999999866 899999999999999999999999999999999999
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
+..+-
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 87653
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=7.3e-15 Score=142.77 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=75.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeeeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYVGP 89 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~~ 89 (398)
...+|||+|||.++|+++|+++|++||.|.+|+|+.|. +|++||||||+|++.++|++||+.||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999998 99999999999999999999999999998876 6888887
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+..+
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7643
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=123.66 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=106.1
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..+++|||+|||.+|.++||.++|.+||.|.+|.+...+ + .-+||||+|++..+|+.||..-+|..++|..|.|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-C-CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 357899999999999999999999999999998875433 2 34799999999999999999999999999999998875
Q ss_pred ccccc---c-------------------ccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC
Q 039806 92 RRADR---I-------------------QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN 140 (398)
Q Consensus 92 ~~~~~---~-------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~ 140 (398)
.-... . ....+...+.|.+||..-+++||++...+-|.|.-..+.+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~ 152 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGV 152 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccc
Confidence 32100 0 0000456799999999999999999999999999999998864
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=131.58 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.+-..+|||++|++.+..|+|+++|++||+|++.+|+.|+ +|+|||||||.|++.|+|.+|++. -+-.|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 3446789999999999999999999999999999999999 999999999999999999999985 45688999887776
Q ss_pred cc
Q 039806 90 FI 91 (398)
Q Consensus 90 ~~ 91 (398)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.56 E-value=1.6e-15 Score=143.41 Aligned_cols=133 Identities=25% Similarity=0.397 Sum_probs=102.1
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhhHHHH---------HHHHHHHHHHHHHH
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQ---------KKAERKAILRAQFE 171 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v~~a~---------~k~~~~~~~~~~~~ 171 (398)
..++|||++|+|++|+|.|+++|+.||+|.+|++++|.. ++++||++..+...... ....+..+.+....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 468899999999999999999999999999999999986 99999954433211110 00111111111111
Q ss_pred Hh--------hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHH
Q 039806 172 RM--------RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 172 ~~--------~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l 234 (398)
+. ...+++++++|+.++++++|+++|++||.|.++.++.|. +.+++|| ||.|.+.+.+.++..
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 11 124578889999999999999999999999999999998 8899999 999998888877755
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.56 E-value=9.6e-14 Score=134.44 Aligned_cols=222 Identities=15% Similarity=0.197 Sum_probs=157.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
...-|.+++||+++|++||+++|+.++ |.++++.++ +|+..|-|||+|.++|++++|++ .+-+.+..+.|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 345688999999999999999999994 887555443 69999999999999999999998 488899999999977654
Q ss_pred ccccc-----ccC--CCCceEEeeCCCccccHHHHHHHHccCCCEEE-EEEeeCCCCCccccCCch--------------
Q 039806 93 RADRI-----QEG--SSFNNLYVKNLDDDMTEEILVEKFSEFGKITS-LVISKDANGTSKGFGSKV-------------- 150 (398)
Q Consensus 93 ~~~~~-----~~~--~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-~~i~~d~~g~s~Gf~~~~-------------- 150 (398)
..... ... .....|.+.+||+.+|++||.++|+..-.+.. +.+..|..+++.|-..+.
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 33221 111 15567889999999999999999997766665 566777777777663111
Q ss_pred --------hhhHHHHHHHHHHHHHH--H------HHHH-----h---------------h--------------------
Q 039806 151 --------LYVARAQKKAERKAILR--A------QFER-----M---------------R-------------------- 174 (398)
Q Consensus 151 --------l~v~~a~~k~~~~~~~~--~------~~~~-----~---------------~-------------------- 174 (398)
|.|-++.....+...-. . .++. . +
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 11111111111111000 0 0000 0 0
Q ss_pred -------------------h------------hhh-ccc--cCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-
Q 039806 175 -------------------K------------ERA-ELY--KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH- 219 (398)
Q Consensus 175 -------------------~------------~~~-~~v--~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf- 219 (398)
. ... .++ ++||++.++.++.++|+..-.+ .|+|-..++|+..|-
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcc
Confidence 0 000 111 7899999999999999987666 788888889999988
Q ss_pred EEEecccHHHHHHHHHHhc
Q 039806 220 CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 220 fV~f~~~~ea~~A~l~~q~ 238 (398)
+|+|++.+||..|...-..
T Consensus 325 dveF~t~edav~Amskd~a 343 (510)
T KOG4211|consen 325 DVEFATGEDAVGAMGKDGA 343 (510)
T ss_pred eeecccchhhHhhhccCCc
Confidence 9999999999999875443
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3e-14 Score=130.27 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=71.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..++|||+||++++|+++|+++|+.||.|.+|.|..|.. ++|||||+|+++++|+.||. |||..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 357999999999999999999999999999999998863 57999999999999999996 999999999999998764
Q ss_pred c
Q 039806 93 R 93 (398)
Q Consensus 93 ~ 93 (398)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 49
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.53 E-value=2.4e-15 Score=107.43 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=31.5
Q ss_pred ChHHHhhhhhcccchhhhccccceeceeeeeee
Q 039806 362 SPDERKDILGQRLYPLVKKLKVITHIFVKGQFR 394 (398)
Q Consensus 362 ~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~~ 394 (398)
+|++||+||||+|||+|++++|++|+|||||+-
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLL 33 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLL 33 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeee
Confidence 689999999999999999999999999999973
No 50
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.7e-14 Score=114.65 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..+++|||+||+..++||.|+++|+.+|.|..|.+-.|+ +-...|||||+|-+.++|+.|++.+||..|+++.|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457899999999999999999999999999999999998 6778899999999999999999999999999999999875
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.49 E-value=2.4e-13 Score=120.21 Aligned_cols=124 Identities=23% Similarity=0.377 Sum_probs=105.7
Q ss_pred cceEEEcCCCCCCcHHHHHH----HHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 14 IGNAFVKNLASTIDNLKLHQ----IFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~----~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+++|||.||...+..++|+. +|+.||.|++|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+.||.++|.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44999999999999999877 999999999887755 568999999999999999999999999999999999988
Q ss_pred cccccccccc----------------------------------------------CCCCceEEeeCCCccccHHHHHHH
Q 039806 90 FIRRADRIQE----------------------------------------------GSSFNNLYVKNLDDDMTEEILVEK 123 (398)
Q Consensus 90 ~~~~~~~~~~----------------------------------------------~~~~~~lfV~nLp~~~tee~L~~~ 123 (398)
+..++..... ......+|+.|||.+++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 8755432100 113456899999999999999999
Q ss_pred HccCCCEEEEEEeeCC
Q 039806 124 FSEFGKITSLVISKDA 139 (398)
Q Consensus 124 F~~fG~I~~~~i~~d~ 139 (398)
|..|.-...++++...
T Consensus 167 f~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR 182 (221)
T ss_pred HhhCcccceeEeccCC
Confidence 9999988888887654
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.2e-14 Score=132.57 Aligned_cols=137 Identities=20% Similarity=0.362 Sum_probs=111.4
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc-----------------------CCchhhhHHHH
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF-----------------------GSKVLYVARAQ 157 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf-----------------------~~~~l~v~~a~ 157 (398)
--+++||+.|++++.|+.|+..|.+||.|.|+.+..|.- ++.+|| +|+.|.|++..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 357899999999999999999999999999999999984 999999 56666666554
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCC-CCccce-EEEecccHHHHHHHHH
Q 039806 158 KKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDR-GISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 158 ~k~~~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~-g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
.-...+.....-.+..+.-+.+++..+..+.+|+||+.+|+.||+|.+|++.++++ +..||| |++|++......|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 43333333333333444455678899999999999999999999999999999994 568999 9999999888888776
Q ss_pred Hhc
Q 039806 236 IMY 238 (398)
Q Consensus 236 ~q~ 238 (398)
+.+
T Consensus 272 MNl 274 (544)
T KOG0124|consen 272 MNL 274 (544)
T ss_pred cch
Confidence 654
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4.3e-15 Score=126.23 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..+++-|||+|||.+.||.||.-.||+||.|.+|.+++|+ ||+|+||||+.|++..+..-|+.+|||..|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3567889999999999999999999999999999999999 999999999999999999999999999999999999987
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
.....
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65443
No 54
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.3e-13 Score=100.49 Aligned_cols=72 Identities=40% Similarity=0.637 Sum_probs=68.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+|+|+|||.++++++|.++|+.||.|..+++..+. +.++|+|||+|.+.++|++|++.+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 7889999999999999999999999999999998873
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8e-14 Score=118.01 Aligned_cols=80 Identities=29% Similarity=0.463 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+||+..+++.||+..|..||.|.+|.|..+ ..|||||+|++..+|+.|+..|+|..|+|..|.|+.+.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 45789999999999999999999999999999999885 46899999999999999999999999999999999987
Q ss_pred cccc
Q 039806 92 RRAD 95 (398)
Q Consensus 92 ~~~~ 95 (398)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 56
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.9e-13 Score=124.69 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=80.6
Q ss_pred CCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 5 rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
.|+..-....+||||.-|+.+++|..|+..|+.||.|..|+|+.|. +|+++|||||+|+++.+...|.+..+|..|+|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 3555556778999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred Eeeeeccc
Q 039806 84 ELYVGPFI 91 (398)
Q Consensus 84 ~i~V~~~~ 91 (398)
.|.|.+-.
T Consensus 172 ri~VDvER 179 (335)
T KOG0113|consen 172 RILVDVER 179 (335)
T ss_pred EEEEEecc
Confidence 99997643
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=5.6e-13 Score=116.92 Aligned_cols=220 Identities=15% Similarity=0.179 Sum_probs=126.8
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC--CCCceeEEEEEecCHHHHHHHHHHhcCCeec---ceEe
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIEKLQGATVE---RMEL 85 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~---gk~i 85 (398)
....++|||.+||.++.-.+|+.+|..|-.-+.+.+.... +...+-+|||.|.+..+|..|++.|||+.++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3458999999999999999999999998877777776544 2345679999999999999999999999996 6788
Q ss_pred eeecccccccccccCC-----CCceEEeeCCCcccc----HHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHH-
Q 039806 86 YVGPFIRRADRIQEGS-----SFNNLYVKNLDDDMT----EEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVAR- 155 (398)
Q Consensus 86 ~V~~~~~~~~~~~~~~-----~~~~lfV~nLp~~~t----ee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~- 155 (398)
+++.++++.++..... ...-+-+.+-..... ++.+..+...+ ++.. -+..........+-..
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~-~l~~-------~~~a~al~~~~~t~~~~ 182 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPD-ELQE-------PGNADALKENDTTKSEA 182 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCcc-ccCC-------ccccccCCCccccchhh
Confidence 8888876655433221 122222222221111 01000000000 0000 0110000000000000
Q ss_pred --HH-HH---HHHHHHHHHHH-HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHH
Q 039806 156 --AQ-KK---AERKAILRAQF-ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKR 228 (398)
Q Consensus 156 --a~-~k---~~~~~~~~~~~-~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~e 228 (398)
+. .+ ++..-...++. ...+...+++|-||..++|||+|+.+|+.|-.....||. .+.|..-. ||+|...+.
T Consensus 183 l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g~~va-f~~~~~~~~ 260 (284)
T KOG1457|consen 183 LSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGGMPVA-FADFEEIEQ 260 (284)
T ss_pred hhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCCcceE-eecHHHHHH
Confidence 00 00 00000111111 223445678999999999999999999999877777774 12222211 566666666
Q ss_pred HHHHHHHHhccc
Q 039806 229 ERTSYLRIMYAK 240 (398)
Q Consensus 229 a~~A~l~~q~~q 240 (398)
|..|...+|..+
T Consensus 261 at~am~~lqg~~ 272 (284)
T KOG1457|consen 261 ATDAMNHLQGNL 272 (284)
T ss_pred HHHHHHHhhcce
Confidence 666655555444
No 58
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.47 E-value=3.8e-15 Score=110.33 Aligned_cols=41 Identities=37% Similarity=0.569 Sum_probs=39.8
Q ss_pred hHHhhhhcCChHHHhhhhhcccchhhhccccceeceeeeee
Q 039806 353 NLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKGQF 393 (398)
Q Consensus 353 ~~~s~la~a~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~ 393 (398)
.+++.||++++++||++|||+|||+|.+++|++|+|||||+
T Consensus 3 ~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGML 43 (72)
T PF00658_consen 3 LTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGML 43 (72)
T ss_dssp TSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHH
Confidence 57899999999999999999999999999999999999997
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.2e-13 Score=122.64 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=70.4
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
+..+|||+||+.++|+++|+++|+.||+|.+|+|.+| +.++|||||+|+++++|+.|+. |||..|.|+.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4469999999999999999999999999999999988 4566899999999999999996 999999999999987553
No 60
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8.6e-14 Score=112.75 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=76.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
.=-|||.++...+||++|++.|..||.|.++++..|. +|-.||||+|+|++.++|++||+.+||..|.|.+|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 3459999999999999999999999999999999999 999999999999999999999999999999999999999764
Q ss_pred cc
Q 039806 93 RA 94 (398)
Q Consensus 93 ~~ 94 (398)
+.
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 43
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.8e-13 Score=118.59 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=79.5
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
+-.+-.+..+|.|-||..-++.++|..+|++||.|-+|.|..|. ++.++|||||.|....+|+.|++.|+|.+|+|++|
T Consensus 6 ~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 6 PPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 34455788999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred eeeccc
Q 039806 86 YVGPFI 91 (398)
Q Consensus 86 ~V~~~~ 91 (398)
.|..+.
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 997654
No 62
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.1e-13 Score=98.21 Aligned_cols=70 Identities=39% Similarity=0.658 Sum_probs=66.4
Q ss_pred EcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 19 VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 19 V~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
|+|||.++++++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988 68999999999999999999999999999999998873
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3e-13 Score=130.55 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCH--HHHHHHHHHhcCCeecceEeeeeccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP--ESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~--e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.-+|||+||++++|++||...|+.||.|.+|.|++ .+| ||||||+|.+. +++.+||+.|||..+.|+.|+|..+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 46899999999999999999999999999999993 367 89999999987 78999999999999999999999887
Q ss_pred cc
Q 039806 92 RR 93 (398)
Q Consensus 92 ~~ 93 (398)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 53
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=1.3e-13 Score=117.46 Aligned_cols=137 Identities=27% Similarity=0.338 Sum_probs=103.1
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccCCchhhhHHHHHHHHHHHHHHHHH----------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFGSKVLYVARAQKKAERKAILRAQF---------- 170 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~---------- 170 (398)
...+|||+||+..++++.|.++|-+.|.|.++++.+|.- ...+||++.+...+...+=+-+--..-+-+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 567999999999999999999999999999999999985 678888654443332221111000000000
Q ss_pred ---HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEE-EEEeeCC-CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 171 ---ERMRKERAELYKNINDEVDEIELKQYFSQCGTISS-VKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 171 ---~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s-vki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
........++++||+++++|..|.+.|+.||.|.+ -+|++|+ +|.++|| ||.|++.+.+.+|+..+..
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 11223456788999999999999999999999987 4899998 6889988 9999999888888766543
No 65
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.8e-12 Score=96.16 Aligned_cols=74 Identities=35% Similarity=0.591 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+|+|+|||..+++++|.++|+.+|.|..+++..+..+..+|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999988667899999999999999999999999999999998863
No 66
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=3.9e-13 Score=132.63 Aligned_cols=83 Identities=31% Similarity=0.463 Sum_probs=79.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
+.|||||+|+++++++|.++|+..|.|.+++++.|+ +|+.|||||++|.+.++|..|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998866
Q ss_pred cccc
Q 039806 94 ADRI 97 (398)
Q Consensus 94 ~~~~ 97 (398)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 67
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=101.59 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=74.2
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+....++-|||+|||++||.|+..++|.+||.|..|+|-..+ ..+|.|||.|++..+|++|++.|+|..+.++.+.|.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344456789999999999999999999999999999996544 467999999999999999999999999999999998
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
+..+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 876544
No 68
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.3e-13 Score=119.00 Aligned_cols=85 Identities=24% Similarity=0.397 Sum_probs=79.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||++|..++||.-|+..|-.||.|.+|+++.|- +++.||||||+|+..|+|..||.++|+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 345799999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.+.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 865543
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=3.2e-13 Score=122.74 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=89.4
Q ss_pred ceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc---------------------CCchhhhHHHHHHHHH
Q 039806 104 NNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF---------------------GSKVLYVARAQKKAER 162 (398)
Q Consensus 104 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf---------------------~~~~l~v~~a~~k~~~ 162 (398)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++- || ++..|.|+.+..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNY-----gFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNY-----GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeeccc-----ceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 469999999999999999999999999999998652 44 2333333333222
Q ss_pred HHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 163 KAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
+....+++++||.+.++.++|++.|++||.|+.|+|++| | ||.|.-.++|..|+..+..
T Consensus 75 ----------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 75 ----------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred ----------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccc
Confidence 345678899999999999999999999999999999954 4 8999999999999954443
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=4e-11 Score=121.75 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=85.9
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
.++||||+.|++++++.||.++|+.||.|.+|+++. ++|||||...+..+|.+|+.+|++..+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 478999999999999999999999999999999976 679999999999999999999999999999999999987
Q ss_pred cccccccCC-CCceEEeeCCCccccHHHHHHHHc
Q 039806 93 RADRIQEGS-SFNNLYVKNLDDDMTEEILVEKFS 125 (398)
Q Consensus 93 ~~~~~~~~~-~~~~lfV~nLp~~~tee~L~~~F~ 125 (398)
+.-+..-.. -..++=|.-||++.-.++|+.+.+
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 766541110 112233455666544444554443
No 71
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=7.2e-12 Score=93.50 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=55.2
Q ss_pred HHHHHHHHh----ccCCeeEEE-EEEcC-C--CCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 28 NLKLHQIFS----KFGDIQSSK-VVVSQ-E--GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 28 e~~L~~~F~----~~G~I~~vk-i~~d~-~--g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
+++|+++|+ .||.|.+|. |..++ + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 77766 5 899999999999999999999999999999999976
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4e-12 Score=113.48 Aligned_cols=72 Identities=22% Similarity=0.464 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
..|||++|++.+.++||..+|..||.|.+|.+ ..||+||+|++.-+|..||..||+..|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46999999999999999999999999999988 4589999999999999999999999999988888888743
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3e-12 Score=115.10 Aligned_cols=84 Identities=31% Similarity=0.430 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..+.|+|||-.||.+..+.||...|-.||.|.+.||..|+ +..||+||||.|+|..+|+.||..+||..|+=|+++|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4578999999999999999999999999999999999999 999999999999999999999999999999999999987
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
-.+|.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 65544
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.4e-11 Score=87.67 Aligned_cols=56 Identities=34% Similarity=0.611 Sum_probs=50.6
Q ss_pred HHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 31 LHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 31 L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
|+++|++||+|.++++..+. +++|||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999996643 589999999999999999999999999999999875
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.26 E-value=9.2e-11 Score=109.31 Aligned_cols=184 Identities=17% Similarity=0.140 Sum_probs=122.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQ--------SSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~--------~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
+.+|||.|||.+||.+++.++|++||-|. .||+.++..|.-||=|.+.|-..|+..-||+-|++..|.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 55799999999999999999999999773 5899999999999999999999999999999999999999999
Q ss_pred eeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHH
Q 039806 86 YVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI 165 (398)
Q Consensus 86 ~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~ 165 (398)
+|+.+.=............ .-...+++.+-+. +.++|+- ..
T Consensus 214 rVerAkfq~Kge~~~~~k~---------k~k~~~~kk~~k~---------------q~k~~dw---------------~p 254 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKE---------KGKCKDKKKLKKQ---------------QQKLLDW---------------RP 254 (382)
T ss_pred EEehhhhhhccCcCccccc---------ccccccHHHHHHH---------------HHhhccc---------------CC
Confidence 9988752221111100000 0000011111000 0000000 00
Q ss_pred HHHHHHHhhhhhhccccCCCc----ccC-------HHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHH
Q 039806 166 LRAQFERMRKERAELYKNIND----EVD-------EIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSY 233 (398)
Q Consensus 166 ~~~~~~~~~~~~~~~v~nL~~----~vt-------ee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~ 233 (398)
.+......+.+++++++|+=. ..+ .++|++.+++||.|.+|.|.-. .+.|- -|.|.+.++|..++
T Consensus 255 d~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 255 DRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred CccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHH
Confidence 000011223345555555421 111 4788999999999999999732 34454 58999999999999
Q ss_pred HHHhcc
Q 039806 234 LRIMYA 239 (398)
Q Consensus 234 l~~q~~ 239 (398)
..++..
T Consensus 332 q~m~GR 337 (382)
T KOG1548|consen 332 QTMDGR 337 (382)
T ss_pred HHhcCe
Confidence 877753
No 76
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.2e-11 Score=121.05 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=123.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..+|||++||..++++.+.|+...||.+...+++.|. +|.+|||||.+|.+......|+..|||+.+.++++.|..+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 4679999999999999999999999999999999999 899999999999999999999999999999999999988764
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHHH
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFER 172 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~~ 172 (398)
-........+....-|..|+.. .+..-|..+.+.+..+ .|....-++
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~--------~~q~~g~~t~Vl~L~n-------------~Vt~deLkd------------ 415 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLL--------MTQMAGIPTEVLCLTN-------------VVTPDELKD------------ 415 (500)
T ss_pred cchhccccCCccccccccchhh--------hcccCCCcchhhhhhh-------------cCCHHHhcc------------
Confidence 3332111100000000111100 0011122222111111 000000000
Q ss_pred hhhhhhccccCCCcccC--HHHHHHHhhcCCCeEEEEEeeC-CCC---Cccce-EEEecccHHHHHHHHHHhcccc
Q 039806 173 MRKERAELYKNINDEVD--EIELKQYFSQCGTISSVKIMRT-DRG---ISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vt--ee~L~~~F~~fG~I~svki~~d-~~g---~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
+.+++ -|+++..+++||.|.+|+|.++ ..+ ...|- ||+|++.+++.+|+.++...+-
T Consensus 416 ------------d~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 416 ------------DEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred ------------hHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 00111 2788999999999999999988 322 22333 9999999999999998876653
No 77
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=5e-12 Score=124.20 Aligned_cols=137 Identities=21% Similarity=0.255 Sum_probs=106.1
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCcccc----------------------CCchhhhHHHHH
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGF----------------------GSKVLYVARAQK 158 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf----------------------~~~~l~v~~a~~ 158 (398)
..+++|+--|+..++.-||.++|+.+|+|.++.++.|.. ++++|. .+..+.|.....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHH
Confidence 567788888999999999999999999999999999986 778876 233334433322
Q ss_pred HHHHHHHHHHHHHH---hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHH
Q 039806 159 KAERKAILRAQFER---MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSY 233 (398)
Q Consensus 159 k~~~~~~~~~~~~~---~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~ 233 (398)
...+.+........ ..+-..++++||.+.++|++|+.+|++||.|..|.+++|. +|.++|| ||+|.+.++|++|+
T Consensus 258 eknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred HHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHH
Confidence 22222222222211 1111227889999999999999999999999999999997 9999999 99999999999998
Q ss_pred HHHhc
Q 039806 234 LRIMY 238 (398)
Q Consensus 234 l~~q~ 238 (398)
.++..
T Consensus 338 e~lng 342 (549)
T KOG0147|consen 338 EQLNG 342 (549)
T ss_pred HHhcc
Confidence 88776
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.22 E-value=4.4e-12 Score=120.95 Aligned_cols=123 Identities=20% Similarity=0.115 Sum_probs=107.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
-.++|++++...+-.+-|...|+--|.+..-.+.+|.++.|++..++.|++.-.+..++.-.+......+.+.+ .+
T Consensus 136 g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~--- 211 (608)
T KOG4212|consen 136 GGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-FS--- 211 (608)
T ss_pred cCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-CC---
Confidence 46899999999999999999999999888888999999999999999999999999999866666666666554 11
Q ss_pred ccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc
Q 039806 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF 146 (398)
Q Consensus 94 ~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf 146 (398)
..-..++||.||...+..+.|++.|.--|.|+++.+-.|+.|.++||
T Consensus 212 ------pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~ 258 (608)
T KOG4212|consen 212 ------PPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF 258 (608)
T ss_pred ------CCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCe
Confidence 11456799999999999999999999999999999999999999999
No 79
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.7e-12 Score=111.50 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=108.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||.||...+||+-|.++|-.-|.|..|+|..+.+++.| ||||.|+++-+..-|++-+||..+.+.++.|....
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34679999999999999999999999999999999999988888 99999999999999999999999999998876532
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchh
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVL 151 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l 151 (398)
-.+- .-|...++++.+.+.|+.-|.|+.+++.++.+|+.+.|+.+++
T Consensus 86 G~sh-------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 86 GNSH-------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred CCCc-------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 1110 1166778999999999999999999999999988888765443
No 80
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.17 E-value=2.1e-10 Score=108.88 Aligned_cols=221 Identities=19% Similarity=0.221 Sum_probs=147.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~~~ 90 (398)
..-+++|.|+-.-|+-|-|+.+|++||.|+.|......+|- -|.|+|.+.+.|+.|...|+|..|.+ ..++|.++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 34578999999999999999999999999987666554332 38999999999999999999987754 44555444
Q ss_pred c----------cccccc------cc-----------------------------------------CCC--CceEEeeCC
Q 039806 91 I----------RRADRI------QE-----------------------------------------GSS--FNNLYVKNL 111 (398)
Q Consensus 91 ~----------~~~~~~------~~-----------------------------------------~~~--~~~lfV~nL 111 (398)
. .|+..- .. ... ...|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 3 111100 00 001 345788888
Q ss_pred Cc-cccHHHHHHHHccCCCEEEEEEeeCCC-CC----cccc--------------CCchhhhHHHHHHHH-------HHH
Q 039806 112 DD-DMTEEILVEKFSEFGKITSLVISKDAN-GT----SKGF--------------GSKVLYVARAQKKAE-------RKA 164 (398)
Q Consensus 112 p~-~~tee~L~~~F~~fG~I~~~~i~~d~~-g~----s~Gf--------------~~~~l~v~~a~~k~~-------~~~ 164 (398)
.. .+|.+.|..+|+-||+|..++|+.++. .. +.++ .++.|.|........ +..
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~ 385 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQ 385 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccc
Confidence 65 589999999999999999999998764 22 2222 233333332211000 000
Q ss_pred HHHHHHHH-----------------hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEeccc
Q 039806 165 ILRAQFER-----------------MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQT 226 (398)
Q Consensus 165 ~~~~~~~~-----------------~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~ 226 (398)
.+.+.+.. -.+..++...|||.+++||+|++.|..-|-..+..... ++.+-+ .+.+.+.
T Consensus 386 glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~sv 462 (492)
T KOG1190|consen 386 GLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESV 462 (492)
T ss_pred cccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCCh
Confidence 00111100 01234566699999999999999999998876665542 222333 7889999
Q ss_pred HHHHHHHHHHhcc
Q 039806 227 KRERTSYLRIMYA 239 (398)
Q Consensus 227 ~ea~~A~l~~q~~ 239 (398)
+||..|...++..
T Consensus 463 eeA~~ali~~hnh 475 (492)
T KOG1190|consen 463 EEAIQALIDLHNH 475 (492)
T ss_pred hHhhhhccccccc
Confidence 9999887766543
No 81
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.15 E-value=7.1e-11 Score=100.82 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=59.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.+++|++|+++|++||.|++|+|++|. +++++|| ||+|++.++|.+|+..+...
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 35678999999999999999999999999999999987 8999999 99999999999999876543
No 82
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.4e-10 Score=103.43 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=59.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
.+.++.|.||+.+++|++|+++|.+||.|.+|.|.+|+ +|.+||| ||+|.++++|.+|+..+..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC
Confidence 45679999999999999999999999999999999998 9999999 9999999999999987654
No 83
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.08 E-value=2.7e-10 Score=84.24 Aligned_cols=61 Identities=30% Similarity=0.434 Sum_probs=56.8
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
++|+|||.++|+++|+++|++||.|.+++++.+.++.++|| ||.|.+.++|.+|+..++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 46799999999999999999999999999999888899999 99999999999999888764
No 84
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.6e-10 Score=106.37 Aligned_cols=84 Identities=25% Similarity=0.343 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+....-|||=-|.+-+|.+||+-+||.||.|.+|.|++|. +|.|-.||||+|++.+++++|.-++++.+|+++.|.|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3456689999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
+.+-+
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87543
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.2e-10 Score=101.84 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=55.5
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHH
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l 234 (398)
-.+++|++|+.++.+|+|+++|++||+|+++.|+.|+ +|+|||| ||+|.+.+.|.||..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc
Confidence 3567889999999999999999999999999999998 9999999 999999999999976
No 86
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.04 E-value=7.6e-09 Score=97.41 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=151.2
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-c-eEeeeecccccc
Q 039806 17 AFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-R-MELYVGPFIRRA 94 (398)
Q Consensus 17 lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-g-k~i~V~~~~~~~ 94 (398)
+-|-|--+.||-+-|+.+....|.|+.|.|.+. +|. -|.|+|++.+.|++|.++|||..|. | ..|+|+++++.+
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 344455589999999999999999999999886 454 4999999999999999999998774 3 678887776332
Q ss_pred ccccc---------------------------------------------------------------------------
Q 039806 95 DRIQE--------------------------------------------------------------------------- 99 (398)
Q Consensus 95 ~~~~~--------------------------------------------------------------------------- 99 (398)
-+...
T Consensus 201 lnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~ 280 (494)
T KOG1456|consen 201 LNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYAS 280 (494)
T ss_pred eeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCC
Confidence 11000
Q ss_pred ---CCCCceEEeeCCCcc-ccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHH-----------------
Q 039806 100 ---GSSFNNLYVKNLDDD-MTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQK----------------- 158 (398)
Q Consensus 100 ---~~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~----------------- 158 (398)
......+.|.+|... .+-+.|.++|=-||.|+.++.|+.+.|...---+....|+++..
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 001233778888765 56778999999999999999998876532211111112222211
Q ss_pred --------------------------HHHHH--HHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCC-eEEEEEe
Q 039806 159 --------------------------KAERK--AILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGT-ISSVKIM 209 (398)
Q Consensus 159 --------------------------k~~~~--~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~-I~svki~ 209 (398)
+..|- .+...+..-.-+++++.|.|.|..+|||.|.++|..-+. -++|+|+
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 00000 000000000113456777999999999999999987654 5788988
Q ss_pred eCCCCC-ccceEEEecccHHHHHHHHHHhccccC
Q 039806 210 RTDRGI-SKGHCMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 210 ~d~~g~-skGffV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
.-++-+ +.| .++|++.++|..|+....+.+..
T Consensus 441 p~kserSssG-llEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 441 PLKSERSSSG-LLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred cccccccccc-eeeeehHHHHHHHHHHhcccccc
Confidence 766444 456 79999999999999888776654
No 87
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=3.2e-08 Score=93.58 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=149.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSS-KVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~v-ki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
-|..++||+.-++.+|..+|+-.....-- .+..+..|+..|.|.|.|.+.|.-+-|++. +.+.+.++.|.|-.+...+
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchh
Confidence 45667999999999999999764221111 122223677889999999999999999985 7778888999887665433
Q ss_pred cccc------cC------CCCceEEeeCCCccccHHHHHHHHccC----CCEEEEEEeeCCCCCccccCCchhhhH----
Q 039806 95 DRIQ------EG------SSFNNLYVKNLDDDMTEEILVEKFSEF----GKITSLVISKDANGTSKGFGSKVLYVA---- 154 (398)
Q Consensus 95 ~~~~------~~------~~~~~lfV~nLp~~~tee~L~~~F~~f----G~I~~~~i~~d~~g~s~Gf~~~~l~v~---- 154 (398)
--.. +. .+.--|.+++||++.|+.|+.++|..- |.++.+-.++..+|+..|-.+..+...
T Consensus 141 f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 141 FLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred heEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 1110 00 023447788999999999999999732 345667667777777776532222111
Q ss_pred HHHHH-----------------HHHHHHHHHHHH---------------------HhhhhhhccccCCCcccCHHHHHHH
Q 039806 155 RAQKK-----------------AERKAILRAQFE---------------------RMRKERAELYKNINDEVDEIELKQY 196 (398)
Q Consensus 155 ~a~~k-----------------~~~~~~~~~~~~---------------------~~~~~~~~~v~nL~~~vtee~L~~~ 196 (398)
.+-.| ++-...+++... ..+...++.+++||++.+.|+|-++
T Consensus 221 ~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~F 300 (508)
T KOG1365|consen 221 FALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDF 300 (508)
T ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHH
Confidence 11111 111111111110 0111334566999999999999999
Q ss_pred hhcCCC-eEE--EEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 197 FSQCGT-ISS--VKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 197 F~~fG~-I~s--vki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
|..|-+ |.- |.++.+..|+..|- ||+|.+.++|+.|....+-
T Consensus 301 lgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 301 LGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred HHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 999965 444 88888889999998 9999999998888765544
No 88
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=6.7e-10 Score=96.95 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=71.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKF-GDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~-G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.+-++|+.+|.-+.+.+|..+|.+| |.|+.+++.++. ||.|||||||+|+++|.|.-|-+.||+.++.++-|.+...-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4568999999999999999999998 778888888888 99999999999999999999999999999999999887654
Q ss_pred c
Q 039806 92 R 92 (398)
Q Consensus 92 ~ 92 (398)
+
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 3
No 89
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.97 E-value=1.1e-09 Score=107.61 Aligned_cols=82 Identities=30% Similarity=0.403 Sum_probs=76.1
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+.+-.++|||.+|+..+...||+.+|++||.|+-.||+++. +--.+|||||.+.+.++|.+||+.|+...|.|+-|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34556899999999999999999999999999999999998 66789999999999999999999999999999999998
Q ss_pred ccc
Q 039806 89 PFI 91 (398)
Q Consensus 89 ~~~ 91 (398)
.+.
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 776
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.92 E-value=1.3e-08 Score=96.87 Aligned_cols=117 Identities=22% Similarity=0.260 Sum_probs=95.8
Q ss_pred cceEEEcCCC-CCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLA-STIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp-~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
+..|.|.||. ..||.+.|+.+|..||+|..|||..++. --|.|++.+...|+-|++.|+|..|.||+|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 5788999998 5789999999999999999999998752 3599999999999999999999999999999988763
Q ss_pred ccc-----cccc-------------------C-------CCCceEEeeCCCccccHHHHHHHHccCCCEEEEE
Q 039806 93 RAD-----RIQE-------------------G-------SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLV 134 (398)
Q Consensus 93 ~~~-----~~~~-------------------~-------~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~ 134 (398)
..- ...+ . ....++...|+|.+++||++++.|..-|-..+..
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkaf 445 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAF 445 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEee
Confidence 221 0000 0 0234577899999999999999999888665543
No 91
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.89 E-value=4.9e-09 Score=77.84 Aligned_cols=59 Identities=17% Similarity=0.412 Sum_probs=53.0
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHh
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
++++|||.++++++|+++|+.||.|..+++..+++|.++|+ ||+|.+.++|.+|+...+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 46799999999999999999999999999999888889999 999999999999988765
No 92
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=2e-09 Score=99.83 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=60.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
...+.+.|.|||+..-|-||+..|.+||.|.+|.|+.++.| |||| ||+|++.+||.||+.+++....
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhccee
Confidence 34567899999999999999999999999999999988665 7999 9999999999999999998753
No 93
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=7.8e-09 Score=96.66 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh-cCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL-QGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~V~~~ 90 (398)
..+.+|||++|-..++|.+|+++|.+||.|.++.+.. .+++|||+|.+.++|+.|.+++ |...|+|++|+|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3467999999999999999999999999999999987 4579999999999999998864 666889999999998
Q ss_pred cc
Q 039806 91 IR 92 (398)
Q Consensus 91 ~~ 92 (398)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 94
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=9e-09 Score=94.11 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=76.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+...+|.|.|||..|+++||+++|..||.+..+-|-.|++|.|.|.|-|.|...++|..|++.+||..|+|+.+.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ccc
Q 039806 92 RRA 94 (398)
Q Consensus 92 ~~~ 94 (398)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 443
No 95
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.81 E-value=4.3e-09 Score=94.52 Aligned_cols=89 Identities=25% Similarity=0.399 Sum_probs=80.2
Q ss_pred CCccc--cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 5 PNSEA--RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 5 rd~~~--~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
.||++ -+....+||.+.|..+++++.|-..|++|-.....++++|. +|+||||+||.|.+.+++.+|+.++||..++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 45554 35667899999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEeeeeccccc
Q 039806 82 RMELYVGPFIRR 93 (398)
Q Consensus 82 gk~i~V~~~~~~ 93 (398)
.+.|+...+.-+
T Consensus 259 srpiklRkS~wk 270 (290)
T KOG0226|consen 259 SRPIKLRKSEWK 270 (290)
T ss_pred cchhHhhhhhHH
Confidence 999998766543
No 96
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-08 Score=100.23 Aligned_cols=77 Identities=27% Similarity=0.423 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.++|||+|||.+++.++|+++|+.||.|....|.... .+++.+||||+|++.++++.||++ +-..|+++++.|+.-.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 4459999999999999999999999999999888866 666669999999999999999996 6889999999997643
No 97
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=4.5e-10 Score=115.54 Aligned_cols=220 Identities=17% Similarity=0.119 Sum_probs=162.5
Q ss_pred ceEEEcCCCCCCcHH-HHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 15 GNAFVKNLASTIDNL-KLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 15 ~~lfV~nLp~~vte~-~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
....+.|+.+...++ .....|..+|.|..|++.... .-.+.-++++.+....+++.|.. .++..+.++...|..+.+
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 456777888777666 577889999999999998744 22222389999999999999997 588999999999988887
Q ss_pred cccccccCC------CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC-CCCccccCCchhhhHHHHHHHHHHHH
Q 039806 93 RADRIQEGS------SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKAI 165 (398)
Q Consensus 93 ~~~~~~~~~------~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~-~g~s~Gf~~~~l~v~~a~~k~~~~~~ 165 (398)
+.......- ...++||+||+....++||...|+.+|.+..+.+.... .++.+|++ |+.+-.......+.
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~----Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKA----YVEFLKPEHAGAAV 726 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccce----eeEeecCCchhhhh
Confidence 664322111 23568999999999999999999999999887766332 36777764 33222222111111
Q ss_pred HHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 166 LRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 166 ~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
... ....-....+++.|+|+..|+++|+.+|+++|++++.+++....|+.+|- ||.|.+..++.++........
T Consensus 727 ~f~-d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 727 AFR-DSCFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred hhh-hhhhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhh
Confidence 000 00011134577799999999999999999999999999998889999998 999999999888876555543
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.75 E-value=3.9e-08 Score=96.00 Aligned_cols=133 Identities=16% Similarity=0.239 Sum_probs=90.4
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHH--HHHHHH---------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA--ILRAQF--------- 170 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~--~~~~~~--------- 170 (398)
...-|-+.+|||+.|++||.++|+.++ |+++.+.++ +|+..|-...++.-+....++.+.. ...+.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 344577889999999999999999986 777655554 5677666433322222221111110 000000
Q ss_pred ------HH-----hhhhhhccccCCCcccCHHHHHHHhhcCCCeEE-EEEeeCCCCCccce-EEEecccHHHHHHHHHH
Q 039806 171 ------ER-----MRKERAELYKNINDEVDEIELKQYFSQCGTISS-VKIMRTDRGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 171 ------~~-----~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s-vki~~d~~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
.. ......+.+++||+.||+++|.++|+..-.|.. |-+..|..|+++|- ||+|++.+.|++|+..-
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 00 012334566999999999999999998877766 55677789999988 99999999999998743
No 99
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.74 E-value=1.7e-08 Score=92.82 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=53.9
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++++|+||++++||++|+++|+.||.|++|+|.+|.. ++|| ||+|.+.++|..|++ +...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~ 65 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGA 65 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCC
Confidence 46789999999999999999999999999999998763 5788 999999999999996 4433
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=7.4e-08 Score=94.66 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=96.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC--CC--Ccee---EEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EG--KSKG---YGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~--~g--~skg---~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
.-+++|||++||.+++|+.|...|..||.+. |...... .+ ..+| |+|+.|+++.+...-|.++.- .+.+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 3468899999999999999999999999874 4444222 22 3466 999999999999988876532 3333
Q ss_pred eeeecccccccc-------------------cccCCCCceEEeeCCCccccHHHHHHHHc-cCCCEEEEEEeeCCC-CCc
Q 039806 85 LYVGPFIRRADR-------------------IQEGSSFNNLYVKNLDDDMTEEILVEKFS-EFGKITSLVISKDAN-GTS 143 (398)
Q Consensus 85 i~V~~~~~~~~~-------------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~-~fG~I~~~~i~~d~~-g~s 143 (398)
.++..+.+.... ...-+..++|||++||.-++.++|..+|+ -||.|..+-|-.|.+ +..
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 333222221111 01112678999999999999999999999 899999999999965 667
Q ss_pred cccC
Q 039806 144 KGFG 147 (398)
Q Consensus 144 ~Gf~ 147 (398)
+|-+
T Consensus 413 kGaG 416 (520)
T KOG0129|consen 413 KGAG 416 (520)
T ss_pred CCcc
Confidence 7765
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.70 E-value=2.6e-08 Score=90.09 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=50.7
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHH
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l 234 (398)
.+++|+||++++||++|+++|+.||+|++|+|.+| +..+|| ||+|.+.+++..|++
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL 62 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh
Confidence 57888999999999999999999999999999988 455567 999999999998875
No 102
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=3.1e-08 Score=90.91 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=62.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccccC
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
+=+++||.-|+.+++|.+|+.+|+.||.|+.|+|++|. +|+++|| ||+|....+...|..++...+..
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 34689999999999999999999999999999999997 9999999 99999999999999888865543
No 103
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.7e-08 Score=99.91 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=70.1
Q ss_pred CCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 5 rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
++|+......++|+|-|||.+|++++|+.+|+.||+|..|+.-. ..+|..||+|-+..+|++|+++||+..+.|+.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 45666677889999999999999999999999999999866533 46789999999999999999999999999999
Q ss_pred ee
Q 039806 85 LY 86 (398)
Q Consensus 85 i~ 86 (398)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 104
>smart00360 RRM RNA recognition motif.
Probab=98.64 E-value=1e-07 Score=69.50 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=52.2
Q ss_pred ccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 181 YKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 181 v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
++||+..+++++|+++|++||.|.++++..+. +++++|+ ||.|.+.++|.+|+..++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 36899999999999999999999999999887 6889999 999999999999987665
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=98.63 E-value=1.1e-07 Score=69.66 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=53.0
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHh
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
+++.|||..+++++|+++|++||.|.++++.++. +.++|+ ||+|.+.++|.+|...++
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhC
Confidence 5779999999999999999999999999999887 778888 999999999999987655
No 106
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.63 E-value=2.9e-08 Score=86.59 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=60.7
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
..|+|.||-+.++.++|+.+|++||.|-+|.|.+|. ++.++|| ||.|..+.||..|..++.....
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l 80 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL 80 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee
Confidence 468899999999999999999999999999999999 9999999 9999999999999998876653
No 107
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=7e-08 Score=78.06 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=58.3
Q ss_pred HHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHH
Q 039806 171 ERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 171 ~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
+..+.+.+++|+||++.++||.|.++|+++|.|..|-+-.|. +-..+|| ||+|.++++|..|..-.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 345567889999999999999999999999999999988888 6779999 99999999999886543
No 108
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=6.1e-08 Score=88.83 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.-+...+||+|++..+|.+++...|+.||.|..+.|..|. +|.+|||+||+|.+.+.+.+|+. ||+..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4466789999999999999999999999999999999999 77899999999999999999999 999999999999987
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
..-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 109
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=6.6e-07 Score=70.43 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=65.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeec----ceEeee
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK--FGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVE----RMELYV 87 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~--~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~----gk~i~V 87 (398)
+||.|+|||...|.++|.+++.. .|...-+-++.|. ++.+.|||||.|.+.++|.+-.+..+|..+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998865 5677778888888 8889999999999999999999999998775 355566
Q ss_pred eccc
Q 039806 88 GPFI 91 (398)
Q Consensus 88 ~~~~ 91 (398)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.51 E-value=1.4e-07 Score=89.33 Aligned_cols=135 Identities=24% Similarity=0.287 Sum_probs=107.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcC-CeecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQG-ATVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng-~~l~gk~i~V~~ 89 (398)
...+++|++++...+.+.++..++..+|.+..+...... +..++|+++|+|...+.+..|+.. ++ ..+.+..+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 457899999999999999999999999988888777766 889999999999999999999984 55 355555555444
Q ss_pred ccccccc------cccCCCCceEE-eeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccC
Q 039806 90 FIRRADR------IQEGSSFNNLY-VKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147 (398)
Q Consensus 90 ~~~~~~~------~~~~~~~~~lf-V~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~ 147 (398)
...+..+ ........++| |+++++++++++|+..|..+|.|+.+++..+.. +.++||+
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a 230 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFA 230 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhh
Confidence 3333211 11111334444 999999999999999999999999999998886 8899985
No 111
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=3.1e-08 Score=84.77 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=49.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRER 230 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~ 230 (398)
.+.-++++|||++.||.+|.-+|++||+|++|.++||+ ||+|+|| |.+|.+.....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTI 91 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTI 91 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceE
Confidence 34567889999999999999999999999999999998 9999999 99997765433
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=2.4e-07 Score=79.61 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=90.2
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc---------------------CCchhhhHHHHHHH
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF---------------------GSKVLYVARAQKKA 160 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf---------------------~~~~l~v~~a~~k~ 160 (398)
..+.|||+|||.++-|.||.++|.+||.|.+|.+......-.-.| ++..|.|+++.--.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 567899999999999999999999999999998865442222222 12222332221100
Q ss_pred HHHHHHHH----------------HHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEec
Q 039806 161 ERKAILRA----------------QFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIA 224 (398)
Q Consensus 161 ~~~~~~~~----------------~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~ 224 (398)
... .... .-...+.+..+.|.+||.+-++.+|+++..+-|.|-...+.+|-+| -|+|.
T Consensus 85 ~s~-~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~G-----vV~~~ 158 (241)
T KOG0105|consen 85 SSS-DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVG-----VVEYL 158 (241)
T ss_pred ccc-ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccce-----eeeee
Confidence 000 0000 0011123345667999999999999999999999999999988654 59999
Q ss_pred ccHHHHHHHHHHhcc
Q 039806 225 QTKRERTSYLRIMYA 239 (398)
Q Consensus 225 ~~~ea~~A~l~~q~~ 239 (398)
..++-.-|+.++.-+
T Consensus 159 r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQ 173 (241)
T ss_pred ehhhHHHHHHhhccc
Confidence 999888887766543
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.7e-08 Score=104.17 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=98.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEE-cCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVV-SQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~-d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..+++||+||+..+.++||.+.|+.+|.+..+.+.- ..+++-+|+|||.|.++++|.+||.....+.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h---------
Confidence 356799999999999999999999999988887773 33788999999999999999999985443333 3
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccC
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFG 147 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~ 147 (398)
...++|.|.|+..|.++++.+++.+|.+++..++...+|+.+|-.
T Consensus 736 -----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 736 -----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred -----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccce
Confidence 236899999999999999999999999999999988888888863
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.44 E-value=3.5e-07 Score=85.18 Aligned_cols=65 Identities=17% Similarity=0.343 Sum_probs=60.9
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+++|+||+.++++++|+++|.+||.|.+|+|..|. +|+++|| ||.|.+.+++..|+..++...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~ 181 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE 181 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe
Confidence 5889999999999999999999999999999999996 9999999 999999999999999888443
No 115
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=5.3e-07 Score=91.44 Aligned_cols=80 Identities=28% Similarity=0.433 Sum_probs=72.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC----CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ----EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~----~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.-.+||||+||+++++++.|..+|..||+|.++||+.-. ..+-+-+|||-|-+..+|++|++.|+|.++.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346899999999999999999999999999999998765 2345669999999999999999999999999999999
Q ss_pred eccc
Q 039806 88 GPFI 91 (398)
Q Consensus 88 ~~~~ 91 (398)
.|..
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9884
No 116
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.44 E-value=7.7e-07 Score=65.38 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=54.8
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
+++.|||..+++++|+++|+.||.|..+++..++.+..+|+ ||+|.+.++|..|....+..
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 56799999999999999999999999999998886677777 99999999999998876654
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.42 E-value=1.2e-06 Score=83.15 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=100.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhc----cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSK----FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~----~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.+.--|..++||+++|+.|+.++|.. -|....|-+++..+|+-.|-|||.|..+++|+.||.+ |...|+-|.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 33456778899999999999999963 2345677777877999999999999999999999986 666666666655
Q ss_pred eccccccc-----cc----------------------ccCCCCceEEeeCCCccccHHHHHHHHccCCCEEE---EEEee
Q 039806 88 GPFIRRAD-----RI----------------------QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS---LVISK 137 (398)
Q Consensus 88 ~~~~~~~~-----~~----------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~---~~i~~ 137 (398)
-.+....- |. ....+..+|.+++||++.|.|||.++|..|..-.. +.+..
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 44332110 00 00114678999999999999999999999975433 67777
Q ss_pred CCCCCccccC
Q 039806 138 DANGTSKGFG 147 (398)
Q Consensus 138 d~~g~s~Gf~ 147 (398)
+..|+..|-.
T Consensus 318 N~qGrPSGeA 327 (508)
T KOG1365|consen 318 NGQGRPSGEA 327 (508)
T ss_pred cCCCCcChhh
Confidence 7778877764
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.41 E-value=4.4e-06 Score=79.08 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=97.7
Q ss_pred CcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..+-+.|-+|+. .++.+.|..+|..||+|+.||+++.+. |.|.|+..+..+.++|+..||+..+.|.+|.|..+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 456789999995 567888999999999999999998753 579999999999999999999999999999997765
Q ss_pred ccc------------------------cccccC---------CCCceEEeeCCCccccHHHHHHHHccCCC-EEEEEEee
Q 039806 92 RRA------------------------DRIQEG---------SSFNNLYVKNLDDDMTEEILVEKFSEFGK-ITSLVISK 137 (398)
Q Consensus 92 ~~~------------------------~~~~~~---------~~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~~~i~~ 137 (398)
... .|-... ..++.|..-|.|..+|||.|.++|..-+. -++++|..
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 221 110000 04456888899999999999999986654 35666665
Q ss_pred CCC
Q 039806 138 DAN 140 (398)
Q Consensus 138 d~~ 140 (398)
.++
T Consensus 442 ~ks 444 (494)
T KOG1456|consen 442 LKS 444 (494)
T ss_pred ccc
Confidence 544
No 119
>PLN03213 repressor of silencing 3; Provisional
Probab=98.40 E-value=5.3e-07 Score=87.92 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=54.5
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEeccc--HHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQT--KRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~--~ea~~A~l~~q~~q 240 (398)
...++|+||++++++++|+..|+.||.|.+|.|+++ +| ||| ||+|... +++.+|+..+....
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 456888999999999999999999999999999954 66 999 9999988 68899988776554
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.37 E-value=9e-07 Score=65.81 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeeCC-C--CCccce-EEEecccHHHHHHHHHHhccc
Q 039806 190 EIELKQYFS----QCGTISSVK-IMRTD-R--GISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 190 ee~L~~~F~----~fG~I~svk-i~~d~-~--g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+++|+++|+ +||.|.+|. |..|. + |.++|| ||.|.+.++|.+|+..++...
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY 61 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 678888888 999999995 66654 5 899999 999999999999998877543
No 121
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=1.6e-06 Score=65.24 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=48.5
Q ss_pred ceEEEcCCCCCCcHHHHH----HHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 15 GNAFVKNLASTIDNLKLH----QIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~----~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..|+|.|||.+.+-..|+ .++..+| .|++| +.+.|+|.|.+.|.|++|.+.|+|..+.|.+|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 469999999999887754 5666776 67766 346799999999999999999999999999999988
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 75433
No 122
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=7.7e-07 Score=69.44 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=53.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++.++|+|||+++|.|+..++|.+||+|..|+|-.+.. -+|- ||.|++..+|++|...+...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhccc
Confidence 356788899999999999999999999999999975543 3454 99999999999998766543
No 123
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.36 E-value=1e-06 Score=78.43 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=93.9
Q ss_pred CceEEeeCCCccccHHHHHH----HHccCCCEEEEEEeeCCCCCcccc---------------------CCchhhhHHHH
Q 039806 103 FNNLYVKNLDDDMTEEILVE----KFSEFGKITSLVISKDANGTSKGF---------------------GSKVLYVARAQ 157 (398)
Q Consensus 103 ~~~lfV~nLp~~~tee~L~~----~F~~fG~I~~~~i~~d~~g~s~Gf---------------------~~~~l~v~~a~ 157 (398)
+.+|||.||+..+..++|+. +|+.||+|.+|...+-..-+...| -|+.+.+..|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 44999999999999999988 999999999998775543222222 34555555544
Q ss_pred HHHHHHHH----------------HH---------HH--------------HHHhhhhhhccccCCCcccCHHHHHHHhh
Q 039806 158 KKAERKAI----------------LR---------AQ--------------FERMRKERAELYKNINDEVDEIELKQYFS 198 (398)
Q Consensus 158 ~k~~~~~~----------------~~---------~~--------------~~~~~~~~~~~v~nL~~~vtee~L~~~F~ 198 (398)
.+...-.. +. .. ......+..+++.|||.+++.+.|..+|+
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 33221110 00 00 01123455677799999999999999999
Q ss_pred cCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhcccc
Q 039806 199 QCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 199 ~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q~ 241 (398)
+|..-..|+++.. ++-.-||+|.+...+..|+..++....
T Consensus 169 qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 169 QFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred hCcccceeEeccC---CCceeEEecchhhhhHHHhhhhcccee
Confidence 9999999998843 333339999999888888777765443
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.29 E-value=5.1e-06 Score=84.27 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=99.5
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
++.+.+-+++.+.+.++.|++++|... .|.++.|..+. .+...|-++|.|....++++|++. |.+..-++.+.|...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 566778889999999999999999754 47777777777 555589999999999999999985 777777888888655
Q ss_pred ccccc-----------------------------cc------ccCCCCceEEeeCCCccccHHHHHHHHccCCCEEE-EE
Q 039806 91 IRRAD-----------------------------RI------QEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITS-LV 134 (398)
Q Consensus 91 ~~~~~-----------------------------~~------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-~~ 134 (398)
..... +. .......+|||..||..+++.++-+.|..--.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 42210 00 00013467999999999999999999998888887 66
Q ss_pred EeeCCCCCc
Q 039806 135 ISKDANGTS 143 (398)
Q Consensus 135 i~~d~~g~s 143 (398)
|.+..+++.
T Consensus 467 lt~~P~~~~ 475 (944)
T KOG4307|consen 467 LTRLPTDLL 475 (944)
T ss_pred eccCCcccc
Confidence 666665443
No 125
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3e-07 Score=80.98 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=60.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|++|-++|||..|...|-+||.|++|++..|. +++.||| ||+|...+||..|+..+.-+.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE 76 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh
Confidence 45789999999999999999999999999999999987 9999999 999999999999998665544
No 126
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.21 E-value=1.7e-06 Score=85.98 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=57.6
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
+.++|+||+++++|++|.++|+..|.|.+++++.|. +|+.+|| |++|.+.+++.+|...+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC
Confidence 678899999999999999999999999999999998 9999999 999999999999988554
No 127
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.3e-06 Score=85.70 Aligned_cols=127 Identities=24% Similarity=0.368 Sum_probs=102.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhcc-----------C-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKF-----------G-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~-----------G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
...++|++++..++++....+|+.- | .|++|.+.. .+.|||++|.+.++|..|.. +++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 5679999999999999999998763 3 378888755 56899999999999999997 7899999
Q ss_pred ceEeeeecccccccc-------------------cccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-C
Q 039806 82 RMELYVGPFIRRADR-------------------IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-G 141 (398)
Q Consensus 82 gk~i~V~~~~~~~~~-------------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g 141 (398)
|..+++........- .........+||++|+...++++++++...||.+....+..|.. |
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 988877443322111 00011456799999999999999999999999999999999986 8
Q ss_pred Ccccc
Q 039806 142 TSKGF 146 (398)
Q Consensus 142 ~s~Gf 146 (398)
.++||
T Consensus 329 ~skg~ 333 (500)
T KOG0120|consen 329 NSKGF 333 (500)
T ss_pred cccce
Confidence 99999
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.15 E-value=1.2e-05 Score=75.56 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFG--DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G--~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
++||+||-+.+|++||.+.....| .|.++|+..++ +|+|||||+|...+..+.++.++-|-.+.|.|..-.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 689999999999999999998877 58899999999 999999999999999999999998888888887655543
No 129
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=2.7e-06 Score=72.75 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
.++.++|+||+..+++.||..+|..||.|.+|-|.+. .-|| ||+|++..||..|.-.+.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~ 72 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDI 72 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccc
Confidence 3567888999999999999999999999999999865 4688 9999999999999988876653
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.12 E-value=7.4e-05 Score=77.06 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=51.5
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHh
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
+++|+|+.|+..++|.||.++|+.||.|.||.++ .++|| ||....+.+|.+|+.++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~ 478 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLS 478 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHh
Confidence 5678899999999999999999999999999997 34666 999999999999998765
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=82.74 Aligned_cols=110 Identities=20% Similarity=0.344 Sum_probs=92.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC-eecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA-TVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~-~l~gk~i~V~~~~~~ 93 (398)
..+||+||.+.++-.||..+|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|. .+.|+.+.|..+.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997642111111111 3489999999999999999999997 789999999999888
Q ss_pred ccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEE
Q 039806 94 ADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135 (398)
Q Consensus 94 ~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i 135 (398)
..+ .+.+-|.|++....++-|..+...||.++.|..
T Consensus 77 kqr------srk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 77 KQR------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred HHH------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 776 456889999999999999999999999999865
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.4e-06 Score=80.27 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=61.4
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..+++.++|..|.+-+++++|.-+|+.||+|.+|.|++|. +|-+-.| ||+|.+.++..+|.-++...
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv 304 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV 304 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce
Confidence 3457889999999999999999999999999999999997 8988888 99999999999999887754
No 133
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=68.28 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=58.2
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
.++|.++..+.+|+++.+.|+.||.|..+.+-.|. +|-.||| .|+|++.++|..|+.++..+..
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l 139 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL 139 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh
Confidence 46779999999999999999999999999999887 9999999 9999999999999988775543
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.03 E-value=4.8e-06 Score=73.79 Aligned_cols=68 Identities=24% Similarity=0.392 Sum_probs=56.0
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
.-+-..+|||-||..++||++|+.+|+.|....-.||.. +.| -..|||+|++.+.|..|+..|.|..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 334567899999999999999999999998766555533 233 35899999999999999999988776
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=3.2e-06 Score=88.05 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=102.0
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....+++||++||+..+++.+|+..|..+|.|.+|.|-+-.-+.-..||||.|.+.+.+-+|.-.+.+..|..-.+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34457799999999999999999999999999999887766555557999999999999999999999888766666655
Q ss_pred ccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEe
Q 039806 90 FIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136 (398)
Q Consensus 90 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~ 136 (398)
...+ ....+.+++++|...+....|...|..||.|..|.+-
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~ 488 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR 488 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc
Confidence 4331 1257889999999999999999999999999987653
No 136
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.02 E-value=1.3e-05 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=36.9
Q ss_pred HHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 193 LKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 193 L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
|+++|++||+|+++++..+. +++ ||+|.+.++|++|...++...
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 78999999999999998553 466 999999999999998887544
No 137
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=76.38 Aligned_cols=88 Identities=26% Similarity=0.263 Sum_probs=78.9
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCe--------eEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcC
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDI--------QSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQG 77 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I--------~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng 77 (398)
+...++...+|||-+|+.++++++|.++|.++|.| -.|+|.+|+ ++..||-|.|.|++...|+.||+.+++
T Consensus 59 ~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 59 SMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 34457788899999999999999999999999977 346788888 999999999999999999999999999
Q ss_pred CeecceEeeeecccccc
Q 039806 78 ATVERMELYVGPFIRRA 94 (398)
Q Consensus 78 ~~l~gk~i~V~~~~~~~ 94 (398)
..+.+..|+|..+.++.
T Consensus 139 kdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccCCCchhhhhhhcc
Confidence 99999999998887655
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.92 E-value=2.7e-05 Score=79.21 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDI-QSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I-~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+.+.+-|-+.|+|++++-+||.++|+.|-.+ .+|.+..+.+|+-.|-|.|-|++.|+|.+|...|++..|..++|++..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4455579999999999999999999999765 456677777999999999999999999999999999999999998753
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.85 E-value=2.8e-05 Score=70.34 Aligned_cols=134 Identities=16% Similarity=0.321 Sum_probs=107.2
Q ss_pred cceEEEcCCCCCCcHHH-H--HHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 14 IGNAFVKNLASTIDNLK-L--HQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~-L--~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
.-..++.|+-..+..+- | ...|+.+-.....+++++.-+..++++|+.|.....-.++-..-+++.+.-..|+..-.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 34567777777765554 3 77899888888889999988889999999999888877777777778887777777665
Q ss_pred cccccccccC--CCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC-CCccccC
Q 039806 91 IRRADRIQEG--SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN-GTSKGFG 147 (398)
Q Consensus 91 ~~~~~~~~~~--~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~-g~s~Gf~ 147 (398)
....+....+ ....+||.+.|..+++++-|...|++|-.-...++++|+. |+++||+
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgyg 235 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYG 235 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccce
Confidence 5544432222 2678899999999999999999999999999999999985 9999995
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.76 E-value=1.4e-05 Score=75.84 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=75.4
Q ss_pred CCcceEE-EcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 12 SGIGNAF-VKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lf-V~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++| |+||+.++++++|++.|..+|.|..+++..++ ++.++|||||.|.+..++..++.. +...+.++.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4456677 99999999999999999999999999999999 999999999999999999999987 88899999999988
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
...+..+
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 7665443
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=2e-05 Score=70.88 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=62.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
-.+.|.|.||+..+...+|.+.|+.||.+....+ ..+++||+|.+.++|.+|++.|++..+.++.|.+...
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 3567999999999999999999999999954443 4578999999999999999999999999999999443
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.73 E-value=5.7e-05 Score=60.76 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=38.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~ 78 (398)
+-|+|.+++..++-++|++.|+.||.|..|.+.... .-|||.|.+.++|+.|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhc
Confidence 458999999999999999999999999888775422 36999999999999999977543
No 143
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.65 E-value=4.9e-05 Score=71.65 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=51.8
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
+..-++++|++|.+.++|.+|+++|.+||.|.++.++.. +++ ||+|.++..|.+|..+.--
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcc
Confidence 334567888999999999999999999999999999843 334 9999999999999887654
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.62 E-value=0.00015 Score=69.34 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=101.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCC----CCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE----GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~----g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
-+-|.|.||++++|.+.++.+|...|.|.+++|.-+.+ ......|||.|.+...+..|-. |-+..+-|+-|.|-+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34799999999999999999999999999999887542 2456799999999999998876 666666666666654
Q ss_pred ccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc--------------CCchhhhHH
Q 039806 90 FIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF--------------GSKVLYVAR 155 (398)
Q Consensus 90 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf--------------~~~~l~v~~ 155 (398)
...-. -.+.. .|..++.-+.+--..-.+|..-+- ..-.|.-..
T Consensus 86 ~~~~~---------------------~p~r~--af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~ 142 (479)
T KOG4676|consen 86 YGDEV---------------------IPDRF--AFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQA 142 (479)
T ss_pred cCCCC---------------------CccHH--HHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHh
Confidence 32111 11111 333333222221111111110000 000011111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEee
Q 039806 156 AQKKAERKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR 210 (398)
Q Consensus 156 a~~k~~~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~ 210 (398)
+..+- ....+++.+.+|...+...++.+.|..+|.|...++.-
T Consensus 143 ~A~kl------------eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as 185 (479)
T KOG4676|consen 143 AAKKL------------EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS 185 (479)
T ss_pred hhhhh------------HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc
Confidence 11111 12237788899999999999999999999998877753
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.55 E-value=0.00013 Score=67.02 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=58.1
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..+.|.||+..|++++|+++|..||.++.+-|.+|+.|.+.|. =|.|...+||.+|+.+.+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC
Confidence 4577799999999999999999999999999999999999998 8999999999999988876
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.51 E-value=0.00021 Score=62.98 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=54.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcC-CCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQC-GTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~f-G~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
......+..++.-+.+.+|..+|.+| |+|+.+++-|+. ||.|||| ||+|.+.+.|.-|.-.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh
Confidence 34456669999999999999999999 788888888887 9999999 999999999998876655
No 147
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00036 Score=69.22 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC-C--CCccc---cCCchhhhHHHHHHHHHHHHH---------
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-N--GTSKG---FGSKVLYVARAQKKAERKAIL--------- 166 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~-~--g~s~G---f~~~~l~v~~a~~k~~~~~~~--------- 166 (398)
-.++|||++||++++|++|...|..||.+.-=.=.+.. . --.+| |- +.-+...++.+.-..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~Yv----flvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYV----FLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEE----EEEecchHHHHHHHHHHhhcccce
Confidence 56789999999999999999999999976421111111 1 12344 41 110111111100000
Q ss_pred ---------H-------------H-----HHHHhhhhhhccccCCCcccCHHHHHHHhh-cCCCeEEEEEeeCC-CCCcc
Q 039806 167 ---------R-------------A-----QFERMRKERAELYKNINDEVDEIELKQYFS-QCGTISSVKIMRTD-RGISK 217 (398)
Q Consensus 167 ---------~-------------~-----~~~~~~~~~~~~v~nL~~~vtee~L~~~F~-~fG~I~svki~~d~-~g~sk 217 (398)
+ . .....+..++++|++||.-++.++|-.+|+ -||.|..|-|-.|+ =+-.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 0 0 011234567889999999999999999998 69999999999884 45566
Q ss_pred ce-EEEecccHHHHHHHHHH
Q 039806 218 GH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 218 Gf-fV~f~~~~ea~~A~l~~ 236 (398)
|- -|+|.+...-.+|+.+.
T Consensus 414 GaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CcceeeecccHHHHHHHhhh
Confidence 66 89999988888887654
No 148
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00023 Score=66.87 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHH------HHHHhccCCeeEEEEEEcC-C-CCceeEE--EEEecCHHHHHHHHHHhcCCeecceE
Q 039806 15 GNAFVKNLASTIDNLKL------HQIFSKFGDIQSSKVVVSQ-E-GKSKGYG--FVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L------~~~F~~~G~I~~vki~~d~-~-g~skg~a--FV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
.-+||-+|+..+..|+. +++|.+||.|..|.|.+.- + ....+.+ ||.|.+.|+|.+||..++|..++||-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 34899999998877662 5799999999988776544 1 2223333 99999999999999999999999999
Q ss_pred eeeeccc
Q 039806 85 LYVGPFI 91 (398)
Q Consensus 85 i~V~~~~ 91 (398)
|+..+-.
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9987755
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.47 E-value=2.2e-05 Score=69.42 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=85.9
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHH--HH-HHHHHHhhhhhh
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKA--IL-RAQFERMRKERA 178 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~--~~-~~~~~~~~~~~~ 178 (398)
..++|||.|+...+|||-|.++|-.-|.|..+.|..+.+++.+ |. +|.+.......-+ .+ ...........+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa----~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FA----YVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-ee----eeecccccchhhhhhhcccchhccchhhcc
Confidence 4578999999999999999999999999999999999988777 52 2322221111100 00 001111222233
Q ss_pred ccccC----CCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEeccc
Q 039806 179 ELYKN----INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQT 226 (398)
Q Consensus 179 ~~v~n----L~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~ 226 (398)
.+-+| |+..++++.+.+.|+.-|.|..+++.++.+|+++-| |+.+...
T Consensus 83 ~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 83 LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 44466 999999999999999999999999999888888776 6665443
No 150
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00024 Score=70.96 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=65.1
Q ss_pred CCcceEEEcCCCC--CCc----HHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-ceE
Q 039806 12 SGIGNAFVKNLAS--TID----NLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-RME 84 (398)
Q Consensus 12 ~~~~~lfV~nLp~--~vt----e~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-gk~ 84 (398)
.-...|+|.|.|- ... ..-|..+|+++|.|....++-++.|.++||.|++|.+..+|+.|++.|||..|+ ...
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4456799999994 222 234667899999999999999997779999999999999999999999999875 456
Q ss_pred eeeeccc
Q 039806 85 LYVGPFI 91 (398)
Q Consensus 85 i~V~~~~ 91 (398)
..|..+.
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 6665544
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.45 E-value=0.00035 Score=71.52 Aligned_cols=65 Identities=25% Similarity=0.227 Sum_probs=55.9
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC------CCCccceEEEecccHHHHHHHHHHhccccC
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD------RGISKGHCMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~------~g~skGffV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
+.++++||+.+++++.|...|..||.|.+|+||... .+..|| ||.|-+++||.+|...+|..-.+
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cg-fvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCG-FVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccc-eeeehhhhhHHHHHHHhcceeee
Confidence 446679999999999999999999999999998643 455677 79999999999999988876544
No 152
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.40 E-value=0.001 Score=62.96 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred cccCCCcceEEEcCCCC----CCc-------HHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 8 EARLSGIGNAFVKNLAS----TID-------NLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~----~vt-------e~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
..+.+..++|.|+||=. ..+ .++|.+--++||.|.+|.|.-.. ..|.+-|.|.+.++|..||+.|+
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhc
Confidence 34556678999999852 223 34455567889999999887655 55789999999999999999999
Q ss_pred CCeecceEeeeecccc
Q 039806 77 GATVERMELYVGPFIR 92 (398)
Q Consensus 77 g~~l~gk~i~V~~~~~ 92 (398)
|..+.|++|.......
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 9999999999876543
No 153
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.38 E-value=6.9e-05 Score=68.06 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHh-ccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 29 LKLHQIFS-KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 29 ~~L~~~F~-~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+||+..|+ +||.|.+++|..+..-.-+|-.||.|..+|+|++|++.||+..+.|++|..+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 7999999988877655578899999999999999999999999999999987653
No 154
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.31 E-value=0.00022 Score=70.76 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=51.6
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
.++++|||.++++++|+++|+.||.|+...|..-. .+++.+| ||+|.+..++..|+.+.
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 47889999999999999999999999999987644 5555566 99999999999998877
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.00071 Score=53.68 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=50.9
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEE-EEEc-------CCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSK-VVVS-------QEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vk-i~~d-------~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
..+-|.|-+.|.+.+ ..+.+.|++||+|++.. +.++ +......+-.|.|+++.+|.+||. .||+.|.|.-
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 345699999999954 56889999999998875 1111 101123478899999999999998 4999998854
Q ss_pred e-eeecc
Q 039806 85 L-YVGPF 90 (398)
Q Consensus 85 i-~V~~~ 90 (398)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45554
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.20 E-value=0.00089 Score=46.73 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHH
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAI 72 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai 72 (398)
+.|-|.+.+.+..+. +...|+.||.|..+.+.. .+-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 468888998777654 556999999999988852 3458999999999999985
No 157
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.00 E-value=0.00094 Score=66.78 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=56.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+.++|.+|...+-..+|+.+|++||+|+-+||+.+. +-..++| ||+..+..+|.+++..++-..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE 471 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh
Confidence 34568889999999999999999999999999999876 3344555 999999999999998877654
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.99 E-value=0.00062 Score=66.00 Aligned_cols=77 Identities=27% Similarity=0.283 Sum_probs=62.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEc---C---CCCc--------eeEEEEEecCHHHHHHHHHHhcCC
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS---Q---EGKS--------KGYGFVQYSTPESALDAIEKLQGA 78 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d---~---~g~s--------kg~aFV~F~~~e~A~~Ai~~lng~ 78 (398)
.+++|.+-|||.+-..+.|.++|+.+|.|.+|+|+.- + .+.. +-+|+|+|+..+.|.+|.+.+|..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999999999999999999999999876 3 2222 457999999999999999988665
Q ss_pred eecceEeeeec
Q 039806 79 TVERMELYVGP 89 (398)
Q Consensus 79 ~l~gk~i~V~~ 89 (398)
..+..-++|..
T Consensus 310 ~~wr~glkvkL 320 (484)
T KOG1855|consen 310 QNWRMGLKVKL 320 (484)
T ss_pred hhhhhcchhhh
Confidence 55444444433
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.88 E-value=0.00097 Score=60.62 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=62.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-C--------CCceeE----EEEEecCHHHHHHHHHHhcCCe
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-E--------GKSKGY----GFVQYSTPESALDAIEKLQGAT 79 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~--------g~skg~----aFV~F~~~e~A~~Ai~~lng~~ 79 (398)
..+-||+++||+..+-.-|+++|+.||.|-.|.+.... + |.++++ |+|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999988877655 3 333332 6799999999999999999999
Q ss_pred ecceE
Q 039806 80 VERME 84 (398)
Q Consensus 80 l~gk~ 84 (398)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.83 E-value=7.3e-05 Score=72.27 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=52.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeC---C---CCCccce---------EEEecccHHHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRT---D---RGISKGH---------CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d---~---~g~skGf---------fV~f~~~~ea~~A~l~~ 236 (398)
..+++++.|||.+..-+.|.++|+.+|.|.+|+|+.. + .|..++| +|+|...+.|++|..-+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4567778999999999999999999999999999875 2 3445555 89999999999997654
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.74 E-value=0.0016 Score=59.32 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC----eecceEeeeecc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA----TVERMELYVGPF 90 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~----~l~gk~i~V~~~ 90 (398)
+.|+|.||..-+.++.|++.|+.||.|....+..|..++..+-++|.|.+.-.|.+|+..++-. ...+..+-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 7899999999999999999999999999999999999999999999999999999999987533 334566666554
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 4
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.71 E-value=0.0026 Score=51.14 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=37.5
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhcc
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~ 239 (398)
.++|.+++..++-++|++.|+.||.|..|.+. .|...| ||.|.+.+.|.+|..+....
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---~G~~~g-~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---RGDTEG-YVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE-----TT-SEE-EEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEec---CCCCEE-EEEECCcchHHHHHHHHHhc
Confidence 45678899999999999999999999998886 445556 89999999999998877655
No 163
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.66 E-value=0.0013 Score=60.37 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=58.8
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
.-..+.++|+|+++.++.+++..+|+.||.|..|.|..|. .|.+||| ||+|.+.+.+..|+. +.....
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 4445678889999999999999999999999999999998 6679999 999999999999977 555443
No 164
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.0014 Score=65.63 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=51.6
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
+...++++|-|||.+|++++|+.+|+.||+|..|+--+. .+|- ||+|.+..+|.+|..++...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~ 135 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRR 135 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHH
Confidence 445688999999999999999999999999998665432 3444 99999999999888765543
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.57 E-value=0.0081 Score=50.64 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=52.6
Q ss_pred CcceEEEcCCC-----CCCcH----HHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 13 GIGNAFVKNLA-----STIDN----LKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 13 ~~~~lfV~nLp-----~~vte----~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
..++|.|.=+. .+.-. .+|.+.|+.||.+.-+++..+ --+|.|.+-++|-+|++ ++|..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCE
Confidence 34577776555 22222 367889999999888888653 48999999999999998 899999999
Q ss_pred Eeeeecccc
Q 039806 84 ELYVGPFIR 92 (398)
Q Consensus 84 ~i~V~~~~~ 92 (398)
.|.|..-.+
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 999977543
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0072 Score=55.14 Aligned_cols=79 Identities=29% Similarity=0.320 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCeecceEeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCcccc
Q 039806 67 SALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGF 146 (398)
Q Consensus 67 ~A~~Ai~~lng~~l~gk~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf 146 (398)
-|..|-..|.+....++.+.|.++. ...|||.||+..++.|.+...|+.||.|...+++.|..++..+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 4566666788999999999999875 26799999999999999999999999999999999987776655
Q ss_pred CCchhhhHHHHHHH
Q 039806 147 GSKVLYVARAQKKA 160 (398)
Q Consensus 147 ~~~~l~v~~a~~k~ 160 (398)
+ .|.++++..
T Consensus 75 g----~v~~~~k~~ 84 (275)
T KOG0115|consen 75 G----IVEFAKKPN 84 (275)
T ss_pred c----hhhhhcchh
Confidence 4 444444333
No 167
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.39 E-value=0.017 Score=43.72 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
.-.+|. +|+.....||.++|+.||.|. |..+.|- -|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999984 6666543 49999999999999998775
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.35 E-value=0.0047 Score=43.05 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=35.3
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHH
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSY 233 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~ 233 (398)
+.|.+.+.+.. +.+.++|..||+|+++.+. ....-+||.|+++.+|.+|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 33445554444 4555699999999998885 12233499999999999984
No 169
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.15 E-value=0.015 Score=45.81 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=52.8
Q ss_pred hhccccCCCcccCHHHHHHHhhcC--CCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQC--GTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~f--G~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++.++|||...|.++|.+++... |...-+.+..|- ++.+.|| ||.|.+.+.+.+-....+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 356779999999999999999664 777778888886 8889999 99999999998877666644
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.93 E-value=0.022 Score=52.95 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHHHhccCCeeEEEEEEcCCC-Cce-eEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 29 LKLHQIFSKFGDIQSSKVVVSQEG-KSK-GYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 29 ~~L~~~F~~~G~I~~vki~~d~~g-~sk-g~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+++.+-..+||.|..|.|..+++. ... ---||+|+..++|.+|+-.|||..++|+.+...+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 456677889999999999988722 111 13799999999999999999999999999887654
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.92 E-value=0.0078 Score=60.84 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCccc-cCCCcceEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee--
Q 039806 5 PNSEA-RLSGIGNAFVKNLASTIDNLKLHQIFSK-FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV-- 80 (398)
Q Consensus 5 rd~~~-~~~~~~~lfV~nLp~~vte~~L~~~F~~-~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l-- 80 (398)
|+|+. |+.-+.-|+|.||-.-.|...|++++.. .|.|.+..| | +-|..|||.|.+.++|.+.+++|||..+
T Consensus 434 RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D---kIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 434 RVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D---KIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred cCCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H---HhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 44443 6666788999999999999999999985 666766622 3 2566899999999999999999999876
Q ss_pred -cceEeeeeccc
Q 039806 81 -ERMELYVGPFI 91 (398)
Q Consensus 81 -~gk~i~V~~~~ 91 (398)
+.|.|.+.+..
T Consensus 509 sNPK~L~adf~~ 520 (718)
T KOG2416|consen 509 SNPKHLIADFVR 520 (718)
T ss_pred CCCceeEeeecc
Confidence 56777776654
No 172
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.74 E-value=0.028 Score=58.72 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.4
Q ss_pred HHHHHHHHhcc
Q 039806 28 NLKLHQIFSKF 38 (398)
Q Consensus 28 e~~L~~~F~~~ 38 (398)
.+++.+.|...
T Consensus 85 ~~e~~~~F~~~ 95 (1102)
T KOG1924|consen 85 SNEVLELFELM 95 (1102)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 173
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.62 E-value=0.0073 Score=57.30 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHH---HHHhccCCeeEEEEEEcCC--CCc--eeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 15 GNAFVKNLASTIDNLKLH---QIFSKFGDIQSSKVVVSQE--GKS--KGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~---~~F~~~G~I~~vki~~d~~--g~s--kg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.-+||-+|+.....+++. +.|..||.|.+|.+..+.+ ..+ -.-++|.|+..|+|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 357888999877555554 4899999999998888662 111 123899999999999999999999999998777
Q ss_pred eccccc
Q 039806 88 GPFIRR 93 (398)
Q Consensus 88 ~~~~~~ 93 (398)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665443
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.57 E-value=0.066 Score=38.43 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcc----CCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKF----GDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~----G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
.|+|++++. .+-+||+.+|..| + ...|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 699999965 6777899999998 4 4467777664 3889999999999999764
No 175
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.83 E-value=0.032 Score=49.22 Aligned_cols=70 Identities=10% Similarity=0.168 Sum_probs=46.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhc-cCCe---eEEE--EEEcCC-CCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSK-FGDI---QSSK--VVVSQE-GKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~-~G~I---~~vk--i~~d~~-g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
...+|-|++||++.|++++.+.++. ++.- ..+. +..... -..-.-|||.|.+.+++..-.+.++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4458999999999999999998777 6655 3333 222221 1233469999999999999999999987754
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.83 E-value=0.017 Score=61.14 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCC--CCccccCCchhhhHHH--HHHHHHH------HHHHHHHH
Q 039806 102 SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDAN--GTSKGFGSKVLYVARA--QKKAERK------AILRAQFE 171 (398)
Q Consensus 102 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~--g~s~Gf~~~~l~v~~a--~~k~~~~------~~~~~~~~ 171 (398)
..++||++||+..+++.+|+..|..+|.|+++.|.+-.- +...+|- .+....+ ..+.+.. -..+..+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~--~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFV--SLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhh--hhhccccCcccchhhcCCccccCccccccc
Confidence 346699999999999999999999999999998876643 3344441 1100000 0000000 00111111
Q ss_pred --HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhcc
Q 039806 172 --RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 172 --~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~ 239 (398)
.....+.+++++|..-+....|...|..||.|..|.+- .|.+-- ||.+.+...+..|.-.+...
T Consensus 449 ~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~ya-yi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 449 QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYA-YIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcce-eeecccCccchhhHHHHhcC
Confidence 23345567779999999999999999999999987773 333332 89999988877776655544
No 177
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.10 E-value=0.17 Score=47.36 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=54.7
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce-Eeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM-ELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk-~i~V~~~~~ 92 (398)
..=|-|-+++..-.. -|..+|+.||+|++.... .+| -+-+|.|.+.-+|++||.+ ||++|+|. -|-|..+..
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 344667788876554 477899999999866543 333 3789999999999999985 99999874 455666555
Q ss_pred cc
Q 039806 93 RA 94 (398)
Q Consensus 93 ~~ 94 (398)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 44
No 178
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.78 E-value=0.12 Score=52.28 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=55.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC--CeecceEeee
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSK--FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG--ATVERMELYV 87 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~--~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~l~gk~i~V 87 (398)
.|-|.|+.||..+-.|+++.+|+. +-++.+|....+. -=||.|++..||+.|.+.|.. +.|.||.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 456788999999999999999976 7789999987764 258999999999999987754 3667776644
No 179
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.64 E-value=0.43 Score=34.79 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 24 STIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 24 ~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
..++-+|++..+..|+- .+|..|.+| =||.|.+.++|++|....||..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35678899999999963 345556544 379999999999999999999998877665
No 180
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.082 Score=53.44 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=45.0
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 191 IELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..|..+|+++|+|+...+..|+.|+.+|| |++|++..+|..|...+...+
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccce
Confidence 35778999999999999999999999999 999999999999998777654
No 181
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.48 E-value=0.21 Score=47.50 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=43.4
Q ss_pred cCCCcccCHHH----H--HHHhhcCCCeEEEEEeeCC-----CCCccceEEEecccHHHHHHHHHHhccc
Q 039806 182 KNINDEVDEIE----L--KQYFSQCGTISSVKIMRTD-----RGISKGHCMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 182 ~nL~~~vtee~----L--~~~F~~fG~I~svki~~d~-----~g~skGffV~f~~~~ea~~A~l~~q~~q 240 (398)
-+|+..+-+|+ | .++|.+||.|..|.|-+.. +...-|.||+|.+.+||++++.+....-
T Consensus 120 igi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 120 IGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred ecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 56666665554 3 4789999999998886543 1223566999999999999998776543
No 182
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.72 E-value=0.054 Score=55.76 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
...-+|||+|+...+..+-+..+...+|.|.+|+... |||.+|....-+.+|+..++-..++|+++.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456899999999999999999999999999998754 999999999999999999999999998887755
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.71 E-value=1.3 Score=35.82 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=47.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 17 AFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 17 lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
+-+-..|..++.++|..+.+.+- .|..++|++|... ++--+.+.|++.++|++..+..||+.++.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444455566667766666654 5778999987643 45568899999999999999999988754
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.40 E-value=0.3 Score=43.31 Aligned_cols=61 Identities=23% Similarity=0.149 Sum_probs=45.5
Q ss_pred cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc--CCeecceEeeeecccc
Q 039806 27 DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ--GATVERMELYVGPFIR 92 (398)
Q Consensus 27 te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~l~gk~i~V~~~~~ 92 (398)
..+.|+++|+.|+.+.+..+++. -+-..|.|.+.++|.+|...|+ +..+.|+.++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999988877763 3558999999999999999999 8999999999987743
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.44 E-value=0.078 Score=51.74 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=77.1
Q ss_pred ceEEeeCCCccccHHHHHHHHccCCC-EEEEEEeeCCCCCccccCCchh-hhHHHHHHHHH---HHH-------HHHHHH
Q 039806 104 NNLYVKNLDDDMTEEILVEKFSEFGK-ITSLVISKDANGTSKGFGSKVL-YVARAQKKAER---KAI-------LRAQFE 171 (398)
Q Consensus 104 ~~lfV~nLp~~~tee~L~~~F~~fG~-I~~~~i~~d~~g~s~Gf~~~~l-~v~~a~~k~~~---~~~-------~~~~~~ 171 (398)
+.+|++||.+.++..||..+|..--. ...-.+++. ||.+... .-.|+.+..+. ..+ ......
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46899999999999999999985411 011112211 2211110 11222221111 111 111223
Q ss_pred HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEee-CCCCCccceEEEecccHHHHHHHHHHhccccC
Q 039806 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMR-TDRGISKGHCMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 172 ~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~-d~~g~skGffV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
.....+.+-+.|++...-++.|..+...||++++|.... |..-.-- -|++..++.++.|+..++..|..
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavv--nvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVV--NVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHH--HHHHHHHHHHHHHHHhhcchHhh
Confidence 333456678899999999999999999999999997642 3211001 36677777777777776665543
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.36 E-value=0.57 Score=39.31 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=52.6
Q ss_pred CCcceEEEcCCCCCC----cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTI----DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~v----te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
...++|.|+=|.++. +-+.+...++.||+|.+|...- +--|.|.|++..+|=+|+.+... ..-|..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 456788887666554 4445666789999999998842 34699999999999999998754 445566665
Q ss_pred ecc
Q 039806 88 GPF 90 (398)
Q Consensus 88 ~~~ 90 (398)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 553
No 187
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.63 E-value=0.14 Score=50.76 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=56.1
Q ss_pred EEEcCCCCCC-cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 17 AFVKNLASTI-DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 17 lfV~nLp~~v-te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
|-+.-.+... |-++|...|.+||.|..|.|-.. --.|.|.|.+..+|-+|.. ..+..|+++.|+|.|....
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 3333344333 67889999999999999988443 2358999999999988876 5899999999999998753
No 188
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.58 E-value=0.082 Score=51.12 Aligned_cols=128 Identities=12% Similarity=-0.039 Sum_probs=82.6
Q ss_pred CccccCCCcceEEEcCCCCCC-cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 6 NSEARLSGIGNAFVKNLASTI-DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 6 d~~~~~~~~~~lfV~nLp~~v-te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
|++.-..-.++.||++++..+ +-+++...|-..+..+-|....+.. .--.|||+.|.+......++. -+|.++....
T Consensus 44 ~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~-~p~r~af~~l~~~navprll~-pdg~Lp~~~~ 121 (479)
T KOG4676|consen 44 DDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEV-IPDRFAFVELADQNAVPRLLP-PDGVLPGDRP 121 (479)
T ss_pred CCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCC-CccHHHHHhcCcccccccccC-CCCccCCCCc
Confidence 333334456789999999755 5555555555445444343333331 123469999999888887776 5787777777
Q ss_pred eeeecccccccc------------cccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEe
Q 039806 85 LYVGPFIRRADR------------IQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVIS 136 (398)
Q Consensus 85 i~V~~~~~~~~~------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~ 136 (398)
+...-+.+...- ..+. -.++++|.+|...+...++-+.|..+|+|.....-
T Consensus 122 lt~~nh~p~ailktP~Lp~~~~A~klee-irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a 184 (479)
T KOG4676|consen 122 LTKINHSPNAILKTPELPPQAAAKKLEE-IRRTREVQSLISAAILPESGESFERKGEVSYAHTA 184 (479)
T ss_pred cccccCCccceecCCCCChHhhhhhhHH-HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh
Confidence 644333222111 0011 23679999999999999999999999998876554
No 189
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.37 E-value=0.36 Score=37.31 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=45.5
Q ss_pred EEEEecCHHHHHHHHHHh-cCCeecceEeee--eccccccccc---ccCCCCceEEeeCCCccccHHHHHHHHc
Q 039806 58 GFVQYSTPESALDAIEKL-QGATVERMELYV--GPFIRRADRI---QEGSSFNNLYVKNLDDDMTEEILVEKFS 125 (398)
Q Consensus 58 aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~V--~~~~~~~~~~---~~~~~~~~lfV~nLp~~~tee~L~~~F~ 125 (398)
|.|.|++++-|++.++.- +...+++..+.| .+.....-.+ ....+.++|.|.|||...++|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999742 223555555444 3333222111 1122678899999999999999987654
No 190
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=89.85 E-value=0.28 Score=38.97 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=35.5
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEE-EeeCCCCC--------ccceEEEecccHHHHHHHHHH
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVK-IMRTDRGI--------SKGHCMAIAQTKRERTSYLRI 236 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svk-i~~d~~g~--------skGffV~f~~~~ea~~A~l~~ 236 (398)
..+.|.+.|.. ....+.++|++||+|.+.. +.++..|. .-...|.|+++.+|.||+.+.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~N 74 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKN 74 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTT
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhC
Confidence 34555667776 5567888999999998875 22221111 111189999999999998653
No 191
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.49 E-value=1.3 Score=32.99 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=37.0
Q ss_pred CCCcHHHHHHHHhccC-----CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 24 STIDNLKLHQIFSKFG-----DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 24 ~~vte~~L~~~F~~~G-----~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..++..+|..++..-+ .|-.|.|.. .|+||+-.. +.|..+++.|++..+.|++|.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678889999997754 366777743 489998775 5899999999999999999999764
No 192
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=89.11 E-value=0.27 Score=45.13 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=54.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-C--------CCccce-----EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-R--------GISKGH-----CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~--------g~skGf-----fV~f~~~~ea~~A~l~~q~~q 240 (398)
....+++.|||+..+-..||++|+.||.|-.|.+.... . |.+++. .|+|.+...|.+....+...+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44677889999999999999999999999999997654 2 333333 899999999998887777665
Q ss_pred c
Q 039806 241 Q 241 (398)
Q Consensus 241 ~ 241 (398)
.
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 4
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.10 E-value=1.7 Score=40.70 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=39.5
Q ss_pred CHHHHHHHhhcCCCeEEEEEeeCCCCC---ccceEEEecccHHHHHHHHHHhc
Q 039806 189 DEIELKQYFSQCGTISSVKIMRTDRGI---SKGHCMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 189 tee~L~~~F~~fG~I~svki~~d~~g~---skGffV~f~~~~ea~~A~l~~q~ 238 (398)
-++++++.+++||+|..|-|+.++.-. ..-.||+|...++|.+|...+..
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC
Confidence 357889999999999999998775221 22229999999999999887654
No 194
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.74 E-value=7.4 Score=37.47 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=36.5
Q ss_pred hhccccCCCcccCHHHHHHHhhcCC--CeEEEEEeeCC-CCCccce
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCG--TISSVKIMRTD-RGISKGH 219 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG--~I~svki~~d~-~g~skGf 219 (398)
-+.+|+||-.-+||+||.+....-| .|.++|++.+. +|.||||
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~ 126 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY 126 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce
Confidence 4567799999999999999988776 46778888777 8999999
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.31 E-value=2.9 Score=31.86 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=35.8
Q ss_pred cCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHh
Q 039806 182 KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 182 ~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q 237 (398)
-..|.++...||.++|+.||.|. |.-+.| .-.||.+.+++.+..+.....
T Consensus 14 ltFPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 14 LTFPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EE--TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred EeCchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 45889999999999999999985 444433 233999999999998776554
No 196
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=85.31 E-value=3.5 Score=31.56 Aligned_cols=59 Identities=10% Similarity=0.258 Sum_probs=47.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
.+-|+-..+...+..+|++.++. || .|.+|+...-..+.. =|||.+...++|.+....+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHhh
Confidence 35677778999999999999988 77 588888887765444 3999999999999877654
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.81 E-value=3.6 Score=40.97 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=57.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
+..|.|=-+|...|-.||..|...+- .|.+++|++|..+. +=-..|.|.+.++|..-.+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999887654 59999999965332 2246899999999999999999998764
No 198
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=84.12 E-value=1.1 Score=43.26 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=49.8
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEE--------EEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISS--------VKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s--------vki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...++++-+|++.+++++|.++|.++|.|.. |+|-+|. |+++||- -|+|.+...|..|+.-
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 3457888999999999999999999998854 5555555 7888877 8999999888888763
No 199
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=84.00 E-value=1.6 Score=33.37 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=35.0
Q ss_pred hccccCCCcccCH----HHHHHHhhcC-CCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhc
Q 039806 178 AELYKNINDEVDE----IELKQYFSQC-GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 178 ~~~v~nL~~~vte----e~L~~~F~~f-G~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~ 238 (398)
.++|.|||.+.+- ..|+.++..+ |.|.+|. ..+. .|.|.+.+.|+||+..+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tA-ilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTA-ILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-E-EEEESSHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEE-EEEeCCHHHHHHHHHhhcc
Confidence 4677999988775 4577777788 5676662 1223 7999999999999998874
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=83.55 E-value=1 Score=45.80 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=45.4
Q ss_pred ccccCCCcccCHHHHHHHhhc--CCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHh
Q 039806 179 ELYKNINDEVDEIELKQYFSQ--CGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~--fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q 237 (398)
++++.|+..+-+|+++.+|+. +-.+++|.... +.++||+|.+..||..|...++
T Consensus 178 vilREIpettp~e~Vk~lf~~encPk~iscefa~-----N~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGENCPKVISCEFAH-----NDNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred EEEeecCCCChHHHHHHHhccCCCCCceeeeeee-----cCceEEEeecchhHHHHHHHHH
Confidence 344999999999999999965 78899999864 3567999999999999977544
No 201
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=81.18 E-value=6.9 Score=29.42 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=47.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
.+-|+-..+...+..+|++.++. || .|.+|+...-+.+.. =|||.+...++|.+.-.++
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHHHhh
Confidence 36778888999999999999988 77 588888777664433 3999999999998876654
No 202
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.63 E-value=1.2 Score=37.82 Aligned_cols=108 Identities=14% Similarity=0.016 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHhc-cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccccccccCC-
Q 039806 24 STIDNLKLHQIFSK-FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGS- 101 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~~~~~~~~- 101 (398)
..++-..|.+.+.. ++....+++..- ..++..++|.++++++++++. ....+++..+.+..-.+.........
T Consensus 27 ~~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 27 KPISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccccee
Confidence 34667777776655 443323333221 447899999999999999983 45567777777766554332221111
Q ss_pred -CCceEEeeCCCcc-ccHHHHHHHHccCCCEEEEEEe
Q 039806 102 -SFNNLYVKNLDDD-MTEEILVEKFSEFGKITSLVIS 136 (398)
Q Consensus 102 -~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~~~i~ 136 (398)
..--|-|.|||.. .+++-++.+-+.+|++.++...
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 2233677899987 7888999999999999887544
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=6.7 Score=40.32 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=61.0
Q ss_pred CCCcceEEEcCCCC-CCcHHHHHHHHhcc----CCeeEEEEEEcCCCCc-------------------------------
Q 039806 11 LSGIGNAFVKNLAS-TIDNLKLHQIFSKF----GDIQSSKVVVSQEGKS------------------------------- 54 (398)
Q Consensus 11 ~~~~~~lfV~nLp~-~vte~~L~~~F~~~----G~I~~vki~~d~~g~s------------------------------- 54 (398)
...+++|-|=||++ .+..+||.-+|+.| |.|++|+|....-|+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999996 57999999999886 5899999876543311
Q ss_pred --------e---------eEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 55 --------K---------GYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 55 --------k---------g~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
| =||.|+|.+.+.|.+..+.+.|..+......+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1 17889999999999999999999887544433
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.21 E-value=1.3 Score=47.19 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=56.1
Q ss_pred EEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee--cceEeeeeccc
Q 039806 18 FVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV--ERMELYVGPFI 91 (398)
Q Consensus 18 fV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l--~gk~i~V~~~~ 91 (398)
.+-|..-+.+...|..+|++||.|.+....+|. -.|.|+|.+.|+|..|+++|+|+.+ -|-+.+|..+.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 345566667888899999999999999988865 3599999999999999999999855 46666775554
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.34 E-value=4.9 Score=37.87 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=50.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC--------CCCceeEEEEEecCHHHHHHHH
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--------EGKSKGYGFVQYSTPESALDAI 72 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~--------~g~skg~aFV~F~~~e~A~~Ai 72 (398)
-++.|.+.|+..+++--.+...|.+||.|++|.++.+. +.+.+.-..+.|-+.+.+-.-.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 35779999999999999999999999999999999876 3455567889999988876544
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.47 E-value=6.1 Score=37.90 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=40.2
Q ss_pred cCCCcccCHHH-H--HHHhhcCCCeEEEEEeeCC--CCCccce---EEEecccHHHHHHHHHHh
Q 039806 182 KNINDEVDEIE-L--KQYFSQCGTISSVKIMRTD--RGISKGH---CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 182 ~nL~~~vtee~-L--~~~F~~fG~I~svki~~d~--~g~skGf---fV~f~~~~ea~~A~l~~q 237 (398)
-+|+..+.++. | .++|.+||.|.+|.+.++. ...+.++ ||+|...++|.+++..-+
T Consensus 83 vgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 83 VGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh
Confidence 55665554444 3 3579999999999998876 2333333 999999999999987433
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.78 E-value=9.8 Score=27.70 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=34.5
Q ss_pred ccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhc
Q 039806 187 EVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 187 ~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~ 238 (398)
.++-++++.-+.+|+-. +|..| ..||||.|.+.+||++.......
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d----~tGfYIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD----RTGFYIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec----CCEEEEEECChHHHHHHHHhcCC
Confidence 56788999999998753 33333 47899999999999998765543
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.26 E-value=6.7 Score=37.00 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=34.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD 212 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~ 212 (398)
...|.+.+.||..+++--.+...|.+||.|++|.++.+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 346788899999999999999999999999999999764
No 209
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=70.00 E-value=8 Score=32.62 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=41.3
Q ss_pred cCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhc
Q 039806 182 KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 182 ~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~ 238 (398)
+|+...-+-..+....+.||+|.+|.++ |+... -|.|.+...|=+|..+.+-
T Consensus 96 knm~~~edl~sV~~~Ls~fGpI~SVT~c----Grqsa-vVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 96 KNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSA-VVVFKDITSACKAVSAFQS 147 (166)
T ss_pred hcCChHHHHHHHHHHHHhcCCcceeeec----CCceE-EEEehhhHHHHHHHHhhcC
Confidence 7777766777788888999999999986 44444 6999999999999876653
No 210
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.83 E-value=6.3 Score=32.17 Aligned_cols=50 Identities=18% Similarity=0.431 Sum_probs=28.8
Q ss_pred EEEcCCCCC---------CcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHH
Q 039806 17 AFVKNLAST---------IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68 (398)
Q Consensus 17 lfV~nLp~~---------vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A 68 (398)
+.|-|++.+ .+.++|.+.|+.|..+ +++.+.+..| +.|++.|+|.+.-+.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChHH
Confidence 456666533 3668899999999887 4777777654 679999999865443
No 211
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=68.65 E-value=11 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=38.9
Q ss_pred hccccCCCcccCHHHHHHHhhcC---CCeEEEEEeeCCCCCccceEEEecccHHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQC---GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~f---G~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~ 235 (398)
.+.++++ ++.+.++++.+|..| .....|..+.|. |+ =|.|.+...|++|+.+
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---Sc--Nvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SC--NVVFKDEETAARALVA 61 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cE--EEEECCHHHHHHHHHc
Confidence 4556777 458889999999998 235567777663 22 3999999999999865
No 212
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=66.03 E-value=22 Score=30.18 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=45.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHH
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
+..+-++-..+...+..+|.+.++. |+ .|.+|+.+..+.|.-+ |||.+....+|......
T Consensus 80 E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KK--A~V~L~~~~~aidva~k 141 (145)
T PTZ00191 80 EDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKK--AYIRLSPDVDALDVANK 141 (145)
T ss_pred hhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceE--EEEEECCCCcHHHHHHh
Confidence 3446777788999999999999987 76 4788887776665444 89999888877665544
No 213
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.44 E-value=13 Score=34.90 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEEEcCCCCceeEEEEEecCHH
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDI-QSSKVVVSQEGKSKGYGFVQYSTPE 66 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I-~~vki~~d~~g~skg~aFV~F~~~e 66 (398)
.-|+++||+.++.-+||+..+.+-+-+ +++... | ..|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 459999999999999999999887643 344332 2 4577999997653
No 214
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=62.70 E-value=3.2 Score=38.32 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=34.2
Q ss_pred HHHHHHhh-cCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 191 IELKQYFS-QCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 191 e~L~~~F~-~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
++|...|+ +||+|++++|..+-.-.-+|= ||.|...++|.+|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC
Confidence 45555555 899999998874421112222 9999999999999887764
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.10 E-value=28 Score=34.28 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCCccccCCC-cceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHH
Q 039806 3 STPNSEARLSG-IGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73 (398)
Q Consensus 3 s~rd~~~~~~~-~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~ 73 (398)
+..++.++.++ -+-|-|-|+|....-+||...|+.|+. -.+|+++-|. .||-.|.+...|..||.
T Consensus 379 ~~p~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 379 KAPPPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cCCCCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 34444454444 356889999999999999999999985 4556666553 79999999999999997
No 216
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=59.26 E-value=33 Score=27.81 Aligned_cols=85 Identities=28% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC--eecceEeeeecccccc-ccc
Q 039806 21 NLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA--TVERMELYVGPFIRRA-DRI 97 (398)
Q Consensus 21 nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~--~l~gk~i~V~~~~~~~-~~~ 97 (398)
=||+-+++ |-++|+.-|+|.+|..+..- . -..|+-.++|. .++|. |.++-..-.. -+-
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtqy------------p----dndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQY------------P----DNDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEecc------------C----CchhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 36666654 89999999999988665421 1 12233345554 34444 6665433111 111
Q ss_pred ccCCCCceEEeeCCCccccHHHHHHHHcc
Q 039806 98 QEGSSFNNLYVKNLDDDMTEEILVEKFSE 126 (398)
Q Consensus 98 ~~~~~~~~lfV~nLp~~~tee~L~~~F~~ 126 (398)
......+++ .--|...|-.+++++|+.
T Consensus 71 ~gTPsgnnv--~F~PYTlT~~e~r~iF~E 97 (145)
T TIGR02542 71 QGTPSGNNV--IFPPYTLTYNELRQIFRE 97 (145)
T ss_pred ecCCCCCce--ecCceeeeHHHHHHHHhh
Confidence 111112222 224677899999999984
No 217
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.56 E-value=2.6 Score=41.71 Aligned_cols=78 Identities=8% Similarity=-0.123 Sum_probs=61.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
++.+.|+..|+.+.++++|.-+|..||.|.-+...... .|..+=.+||+-.+ ++|..||..+.-..+.|.+++|..+.
T Consensus 2 gs~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 2 GSMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred cchhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 35567889999999999999999999999877776655 55566688888665 67888888777777778777776654
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=54.76 E-value=5 Score=37.38 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=24.3
Q ss_pred cCHHHHHHHhhcCCCeEEEEEee-CC-----CCCccc
Q 039806 188 VDEIELKQYFSQCGTISSVKIMR-TD-----RGISKG 218 (398)
Q Consensus 188 vtee~L~~~F~~fG~I~svki~~-d~-----~g~skG 218 (398)
-+++.|+..|+.||.|..|.|.. |+ +|+..|
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisg 209 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISG 209 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCcccc
Confidence 46889999999999999998853 42 666544
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=51.19 E-value=21 Score=31.69 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.0
Q ss_pred CHHHHHHHhhcCCCeEEEEEeeCCCCCccce---EEEecccHHHHHHHHHHh
Q 039806 189 DEIELKQYFSQCGTISSVKIMRTDRGISKGH---CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 189 tee~L~~~F~~fG~I~svki~~d~~g~skGf---fV~f~~~~ea~~A~l~~q 237 (398)
..+.|+++|..|+.+.+..+. +.| .|.|.+.++|.+|+..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-------~sFrRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-------KSFRRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-------TTTTEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhcCCceEEEEc-------CCCCEEEEEeCCHHHHHHHHHHhc
Confidence 347899999999999988877 445 899999999999999877
No 220
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=50.49 E-value=15 Score=32.24 Aligned_cols=59 Identities=8% Similarity=-0.069 Sum_probs=36.3
Q ss_pred hhhccccCCCcccCHHHHHHHhhc-CCCe---EEEEEeeCC-CCC----ccceEEEecccHHHHHHHHH
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQ-CGTI---SSVKIMRTD-RGI----SKGHCMAIAQTKRERTSYLR 235 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~-fG~I---~svki~~d~-~g~----skGffV~f~~~~ea~~A~l~ 235 (398)
...++|++||...||+++.+.++. ++.. ..+.-..+. .-+ ||. ||.|.+.++...-...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRa-Yi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRA-YINFKNPEDLLEFRDR 74 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEE-EEEESSCHHHHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEE-EEEeCCHHHHHHHHHh
Confidence 346788999999999999998888 7766 334322222 111 222 9999999986554443
No 221
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.43 E-value=30 Score=33.26 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=33.7
Q ss_pred EEEEecCHHHHHHHHHHhcCCeecceEeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHH
Q 039806 58 GFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKF 124 (398)
Q Consensus 58 aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F 124 (398)
|||.|++.++|+.|++.+....- +.+.+..+- ..+.|+=.||.....+..+|.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP----------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP----------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC----------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999996543332 333444332 23445555665555555555433
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=47.28 E-value=13 Score=32.59 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred ceEEEcCCCCCC-cHH----HHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce-Eeeee
Q 039806 15 GNAFVKNLASTI-DNL----KLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM-ELYVG 88 (398)
Q Consensus 15 ~~lfV~nLp~~v-te~----~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk-~i~V~ 88 (398)
.++.+-+++..+ ++. ....+|..|.......+++ +.++--|.|.+.+.|.+|...+++..+.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 346666777554 222 2344555554443333332 556667899999999999999999999988 55554
Q ss_pred ccc
Q 039806 89 PFI 91 (398)
Q Consensus 89 ~~~ 91 (398)
.+.
T Consensus 86 faQ 88 (193)
T KOG4019|consen 86 FAQ 88 (193)
T ss_pred Ecc
Confidence 443
No 223
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=46.99 E-value=3.5 Score=42.03 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=55.4
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
..++||++|+++.++-++|+.+.+.+--++.+-+..+. ..+-..+++|+|.---.-..|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35789999999999999999999998777766655544 44556789999998777788888888876643
No 224
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=44.89 E-value=1.3e+02 Score=27.91 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred ccccCCCcceEEEcCCCCCCc--HHHH-----H------HHHhccCC---eeEEEEEEcCCCCceeEEEEEecC----HH
Q 039806 7 SEARLSGIGNAFVKNLASTID--NLKL-----H------QIFSKFGD---IQSSKVVVSQEGKSKGYGFVQYST----PE 66 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vt--e~~L-----~------~~F~~~G~---I~~vki~~d~~g~skg~aFV~F~~----~e 66 (398)
|...+--.-.|-|++|..++. ++.| + ...-.||. ++++.-..+.....+|||++.|.- ..
T Consensus 145 p~s~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~t~~~mgYgd~q~~LElt~~~~~id~~kg~griafaip~d~~~ 224 (299)
T KOG2943|consen 145 PQSDPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKYTRARMGYGDEQCVLELTYNYDVIDRAKGFGRIAFAIPTDDLP 224 (299)
T ss_pred CCCCCeEEEEEEehhHHHHHHHHHHHhCcchhhhhhhhhhhhhccCCcceEEEEEeccCcccccccceeEEEeccccccc
Confidence 333333344678889887763 1111 1 11123664 556666666677789999999964 45
Q ss_pred HHHHHHHHhcCCee
Q 039806 67 SALDAIEKLQGATV 80 (398)
Q Consensus 67 ~A~~Ai~~lng~~l 80 (398)
..+.||+..|+..+
T Consensus 225 ~l~e~iK~~n~~i~ 238 (299)
T KOG2943|consen 225 KLQEAIKSANGTIL 238 (299)
T ss_pred cHHHHHHHhccccc
Confidence 56778887777655
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.81 E-value=59 Score=30.48 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHhcc-C--CeeEEEEEEcCCCCceeEEEEEecCHHHH----HHHHHHhcCCee--cc--eEeeeecccc
Q 039806 24 STIDNLKLHQIFSKF-G--DIQSSKVVVSQEGKSKGYGFVQYSTPESA----LDAIEKLQGATV--ER--MELYVGPFIR 92 (398)
Q Consensus 24 ~~vte~~L~~~F~~~-G--~I~~vki~~d~~g~skg~aFV~F~~~e~A----~~Ai~~lng~~l--~g--k~i~V~~~~~ 92 (398)
.++++=||.+-++.. . ...+|+|.... .-||.|+-+-.. ++.+..|+|..+ .| -.++|.-+..
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckiresn------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~ea 120 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRESN------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEA 120 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeecccc------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhh
Confidence 678888888777642 1 24677775432 678988755443 334444555433 11 1122211111
Q ss_pred ccccc------------------ccCCCCceEEeeCCCcc------------ccHHHHHHHHccCCCEEEEEEe
Q 039806 93 RADRI------------------QEGSSFNNLYVKNLDDD------------MTEEILVEKFSEFGKITSLVIS 136 (398)
Q Consensus 93 ~~~~~------------------~~~~~~~~lfV~nLp~~------------~tee~L~~~F~~fG~I~~~~i~ 136 (398)
+-+-. .......+|++.+||-. -+++-|+..|+.||.|..+.|.
T Consensus 121 kidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 121 KIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred cCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 11000 00013456777776532 3678899999999999988775
No 226
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=43.15 E-value=6 Score=44.15 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=27.0
Q ss_pred HHhhhhhcccchhhhccccceeceeeeeee
Q 039806 365 ERKDILGQRLYPLVKKLKVITHIFVKGQFR 394 (398)
Q Consensus 365 ~qk~mLGe~Lyplv~~~~~~~~~~~~~~~~ 394 (398)
-.+|-|||+|||.++.+.|..|-||||++.
T Consensus 2606 Ae~Q~la~l~wgqhe~~l~a~~s~~sGfL~ 2635 (3015)
T KOG0943|consen 2606 AERQALAELLWGQHEAMLPAFASKISGFLL 2635 (3015)
T ss_pred hhhccchhhcchhhhhHHHHHHHhhhhhhh
Confidence 357889999999999999999999999873
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.69 E-value=58 Score=23.35 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=14.4
Q ss_pred HHHHHHHhccCCeeEEEE
Q 039806 29 LKLHQIFSKFGDIQSSKV 46 (398)
Q Consensus 29 ~~L~~~F~~~G~I~~vki 46 (398)
.+|+++|+..|.|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999864444
No 228
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=40.76 E-value=55 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHH
Q 039806 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~ 235 (398)
++|-+.|+.||+++-||+.-+ ...|+|.+-+.|.+|...
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~ 89 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSL 89 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHG
T ss_pred HHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHcc
Confidence 367888999999999998732 348999999999888653
No 229
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=40.25 E-value=61 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
..++.+||++-.++ |-. +..+.=.+.. .|+|.|||.| |++.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46788888887766 432 2233333333 6889999988 666666653
No 230
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=40.05 E-value=11 Score=37.74 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=36.3
Q ss_pred ccccCCCccc-CHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHH
Q 039806 179 ELYKNINDEV-DEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSY 233 (398)
Q Consensus 179 ~~v~nL~~~v-tee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~ 233 (398)
+.+.-.+... |-++|...|.+||+|..|.|-+. ...+ -|+|+++.||-+|.
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a-~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHA-VVTFKTRAEAGEAY 426 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhh-eeeeeccccccchh
Confidence 3333344443 45899999999999999999654 2233 69999999886653
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=39.90 E-value=35 Score=29.97 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=28.6
Q ss_pred CCeeEEEEEEcCCC--CceeEEEEEecCHHHHHHHHHH
Q 039806 39 GDIQSSKVVVSQEG--KSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 39 G~I~~vki~~d~~g--~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
|.+..|+.-...++ ..+|--||.|.+.+.|..+++.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 77877776554444 5678899999999999998874
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.87 E-value=49 Score=24.13 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHhccC-CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 29 LKLHQIFSKFG-DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 29 ~~L~~~F~~~G-~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
++|.+-|...| .|.++.-+.+. +...----||+.+...+..++ ++=..|++..|.|+...++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCCC
Confidence 57888898888 57877777766 455555778888877663333 34457788899998866543
No 233
>PF15063 TC1: Thyroid cancer protein 1
Probab=35.28 E-value=21 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCe
Q 039806 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDI 41 (398)
Q Consensus 4 ~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I 41 (398)
.-|...||..+.||| .+++.+.|..+|..-|.-
T Consensus 20 ~~dt~~RKkasaNIF-----e~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 20 KFDTASRKKASANIF-----ENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred CcchHHhhhhhhhhh-----hccCHHHHHHHHHHccch
Confidence 344455666666665 789999999999999864
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=35.27 E-value=62 Score=23.76 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHHhccC-CeeEEEEEEcCCCC-ceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 29 LKLHQIFSKFG-DIQSSKVVVSQEGK-SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 29 ~~L~~~F~~~G-~I~~vki~~d~~g~-skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
++|.+-|++.| .++.+.-+...+++ .-.--||+.....+-.. -++=..|++..|.|+...++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46888899988 58888888877433 33355677766544333 344567789999998765543
No 235
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.73 E-value=41 Score=31.98 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCccc-e-EEEecccHHHHHHHHHHh
Q 039806 191 IELKQYFSQCGTISSVKIMRTDRGISKG-H-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~~d~~g~skG-f-fV~f~~~~ea~~A~l~~q 237 (398)
.-|..+|++||+|.+.... ++| | +|.|.++-+|++|+...-
T Consensus 211 s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcC
Confidence 4577889999999876543 233 3 999999999999987554
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.54 E-value=45 Score=23.89 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCeEEEEEe
Q 039806 191 IELKQYFSQCGTISSVKIM 209 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~ 209 (398)
.+||++|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999876664
No 237
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.60 E-value=30 Score=21.90 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=11.3
Q ss_pred CCcccCHHHHHHHhhcCCC
Q 039806 184 INDEVDEIELKQYFSQCGT 202 (398)
Q Consensus 184 L~~~vtee~L~~~F~~fG~ 202 (398)
.-.++++++|++.|.+.+.
T Consensus 17 Y~~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 17 YTVDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp SSS---HHHHHHHHHCS--
T ss_pred ccccCCHHHHHHHHHHhcc
Confidence 3457889999999987653
No 238
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.57 E-value=1.2e+02 Score=22.20 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 29 LKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 29 ~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
++|.+..+++| +..+++.-.- .-++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC---CCCeEEEEECCHHHHHHHHHHHH
Confidence 45777788898 6666764311 14678888889999999888764
No 239
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=31.36 E-value=17 Score=37.60 Aligned_cols=63 Identities=8% Similarity=0.069 Sum_probs=47.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhh-cCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFS-QCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~-~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q 240 (398)
...+.++|.||-.-.|.-.|++++. ..|.|++.-| | .=++. |||.|.+.+||..-+-+++.-+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D-kIKSh-CyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D-KIKSH-CYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--H-Hhhcc-eeEecccHHHHHHHHHHHhccc
Confidence 3456788899999999999999998 5667776522 1 11233 3899999999999888888643
No 240
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=29.84 E-value=2.8e+02 Score=22.23 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=29.4
Q ss_pred CCCCCCcHHHHHHHHhc-cCCeeEEEEEEcC-----CCCceeEEEEEecCHHHHH
Q 039806 21 NLASTIDNLKLHQIFSK-FGDIQSSKVVVSQ-----EGKSKGYGFVQYSTPESAL 69 (398)
Q Consensus 21 nLp~~vte~~L~~~F~~-~G~I~~vki~~d~-----~g~skg~aFV~F~~~e~A~ 69 (398)
--...-+.++|++...+ +|.=.++.++..- .|.|+|||-| |.|.+.|.
T Consensus 27 ~g~~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~ 80 (107)
T COG2004 27 EGSPTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAK 80 (107)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHH
Confidence 33356688889887765 6654444443332 4567878777 56666654
No 241
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=29.47 E-value=2.2e+02 Score=20.49 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.0
Q ss_pred CcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecC---HHHHHHHHHHhc
Q 039806 26 IDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYST---PESALDAIEKLQ 76 (398)
Q Consensus 26 vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~---~e~A~~Ai~~ln 76 (398)
-.-.++.+.|+.+| +|.++.-.........-.-||+++. .+..+.+++.+.
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 34567888999987 5666633322232344456788884 556667777664
No 242
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=29.23 E-value=19 Score=27.64 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=18.7
Q ss_pred hhhhcccchhhhcc-----------ccceeceeeeee
Q 039806 368 DILGQRLYPLVKKL-----------KVITHIFVKGQF 393 (398)
Q Consensus 368 ~mLGe~Lyplv~~~-----------~~~~~~~~~~~~ 393 (398)
..|||+++|+|.++ +.+-+.+|+|++
T Consensus 38 i~~Ge~~~p~~~~~~~~~~~~~a~~~~~c~~hv~G~l 74 (90)
T PF07235_consen 38 ILLGEQAIPLVRRLLRGHPLTAAWFHAECVPHVFGQL 74 (90)
T ss_pred HhcccchhHHHHHHhcCCchhhhhhhccccccccCCC
Confidence 57899999999766 335566666653
No 243
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.31 E-value=1.3e+02 Score=23.36 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=28.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcC
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQ 50 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~ 50 (398)
.+.++-..+.+.|..+|++.|+. || .|.+|+...-.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 46777788999999999999988 77 47777765544
No 244
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=27.83 E-value=2.5e+02 Score=20.57 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=32.3
Q ss_pred cHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecC---HHHHHHHHHHhcC
Q 039806 27 DNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYST---PESALDAIEKLQG 77 (398)
Q Consensus 27 te~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~---~e~A~~Ai~~lng 77 (398)
.-.++.+.|+++| +|.++......++...=.-||+++. .++..++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4567888999986 6777765444333333344577773 5666778877654
No 245
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.92 E-value=20 Score=27.06 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=12.0
Q ss_pred hhhhcccchhhhcc
Q 039806 368 DILGQRLYPLVKKL 381 (398)
Q Consensus 368 ~mLGe~Lyplv~~~ 381 (398)
-++||++||.+.++
T Consensus 39 ilvGeq~~p~~~~l 52 (93)
T COG4317 39 ILVGEQIVPWAKRL 52 (93)
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999876
No 246
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.62 E-value=32 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHH
Q 039806 14 IGNAFVKNLASTIDNLKLHQIF 35 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F 35 (398)
.++|.|.|||...++++|+|..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 4689999999999999999754
No 247
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=25.76 E-value=1.8e+02 Score=22.99 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHhc-cCCeeEEEEEE---cC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGDIQSSKVVV---SQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~I~~vki~~---d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
...+.++|++-..+ |+.=.+..++. .. .|.|.|||.| |+|.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 46678888876654 65322222222 22 4567777776 666666553
No 248
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.32 E-value=1.1e+02 Score=23.19 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=24.1
Q ss_pred CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 039806 40 DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA 78 (398)
Q Consensus 40 ~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~ 78 (398)
.|.||-... ..+||-||+=.++++..+|++.+.+.
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 466665532 27899999999999999999876543
No 249
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=1.2e+02 Score=23.81 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=29.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCce
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSK 55 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~sk 55 (398)
..+.++-..+.+.|..+|.+.++. || .|.+|+.+.-+.+..|
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR 63 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKR 63 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceE
Confidence 346677777888888888888877 77 4777777665544333
No 250
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.61 E-value=82 Score=31.00 Aligned_cols=69 Identities=10% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEE-cC--CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVVV-SQ--EGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~~-d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
.....|-|++||...++++|.+....+-. +....... +. ...-.+.+||.|.+.++...-....+|.++
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35578999999999999999988776542 33333331 11 111245789999999997776666666644
No 251
>PRK11901 hypothetical protein; Reviewed
Probab=23.01 E-value=1.8e+02 Score=28.19 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEE--EecCHHHHHHHHHHhcC
Q 039806 23 ASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFV--QYSTPESALDAIEKLQG 77 (398)
Q Consensus 23 p~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV--~F~~~e~A~~Ai~~lng 77 (398)
-..-++++|.+|.+..+ +..++|.... +|+. .|..| .|.+.++|++|++.|-.
T Consensus 251 ~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 251 SSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred ecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 33456888888888875 4556666655 5543 45544 59999999999998743
No 252
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.24 E-value=2.8e+02 Score=19.33 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=30.2
Q ss_pred cHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHH
Q 039806 27 DNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 27 te~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
.-.++-++|.+.| +|.++.+....+ +++--+.+++.+.|.++|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 4456888888877 688887644322 35555667777777777764
No 253
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=37 Score=33.56 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=48.7
Q ss_pred ceEEEcCCCCCCcHH--------HHHHHHhc--cCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHH
Q 039806 15 GNAFVKNLASTIDNL--------KLHQIFSK--FGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIE 73 (398)
Q Consensus 15 ~~lfV~nLp~~vte~--------~L~~~F~~--~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~ 73 (398)
+.+|+.+.....+++ ++...|.. .+++..+...+|. +..++|--|++|...+.|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 457888888666555 89999998 6778888888887 77889999999999999998875
No 254
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.10 E-value=1.5e+02 Score=30.53 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCC---cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 15 GNAFVKNLASTI---DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 15 ~~lfV~nLp~~v---te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
.==+||||+.=. ....|.++=++||+|..+++-. .=.|.-.+.+.|++|+.+ |+..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 344778887422 3344555556799999888822 146888899999999985 7888888875
No 255
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=22.03 E-value=3.6e+02 Score=20.47 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESAL 69 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~ 69 (398)
...+.+||++.+.. |+. ..-|.=+... .+.|.|||.| |++.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 45677888877755 442 2222223333 5567777777 56666554
No 256
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.87 E-value=2.2e+02 Score=29.46 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHh----ccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 28 NLKLHQIFS----KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 28 e~~L~~~F~----~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
.-+|..+|. .+|-|+++.+...+.-..+...++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 446777775 5788999988887755566788999999999999998764
No 257
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=21.58 E-value=92 Score=24.08 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHhhhhcCChHHHhhhh-hcccchhhhccccceeceeeeeeeeec
Q 039806 354 LSSMLVATSPDERKDIL-GQRLYPLVKKLKVITHIFVKGQFRFIF 397 (398)
Q Consensus 354 ~~s~la~a~p~~qk~mL-Ge~Lyplv~~~~~~~~~~~~~~~~~~~ 397 (398)
..+.|-+|+-.+.-..+ |-+|=+|--...-..+..|+|.+|.||
T Consensus 33 ~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~~RliF 77 (93)
T PF05015_consen 33 RLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGNWRLIF 77 (93)
T ss_pred HHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCCEEEEE
Confidence 45666666544444445 889999998889999999999999998
No 258
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.36 E-value=2.3e+02 Score=23.62 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHhc-cC-CeeEEEE---EEcC--CCCceeEEEEEecCHHHHH
Q 039806 24 STIDNLKLHQIFSK-FG-DIQSSKV---VVSQ--EGKSKGYGFVQYSTPESAL 69 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G-~I~~vki---~~d~--~g~skg~aFV~F~~~e~A~ 69 (398)
...+.+||++-+.. |+ .=.++.+ +... .|.|.|||.| |+|.|.|.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 36688888887755 65 2122222 2222 4677777777 56655554
No 259
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=21.32 E-value=2.9e+02 Score=21.26 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=35.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcC-----CCCce------eEEEEEecCHH
Q 039806 16 NAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQ-----EGKSK------GYGFVQYSTPE 66 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~-----~g~sk------g~aFV~F~~~e 66 (398)
+-+.-..+.+.|..+|++.++. || .|.+|+...-. .|... .-|+|.+...+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 5667778999999999999987 87 47777766544 23211 25778777654
No 260
>PF14893 PNMA: PNMA
Probab=21.22 E-value=85 Score=30.59 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=20.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSK 37 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~ 37 (398)
.+.|.|.+||.++++++|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 457999999999999999988755
No 261
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.88 E-value=4.9e+02 Score=26.52 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhc---cCCeeEEEEEEcCCCCceeEEEE-EecCHHHHHHHHHHh
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSK---FGDIQSSKVVVSQEGKSKGYGFV-QYSTPESALDAIEKL 75 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~---~G~I~~vki~~d~~g~skg~aFV-~F~~~e~A~~Ai~~l 75 (398)
..+|.|..||..++.+++.+.... -+.+.-|.=++|.+... |..|| ++.....++..++.|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~-~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE-GIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC-ceEEEEEECCCccHHHHHHHH
Confidence 368999999999999888876543 33343444445554333 67774 555555555444433
No 262
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.22 E-value=3e+02 Score=18.80 Aligned_cols=54 Identities=26% Similarity=0.256 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCH----HHHHHHHHH
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTP----ESALDAIEK 74 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~----e~A~~Ai~~ 74 (398)
++.|.||.-.--...+.+.++..-.|.++.+-.. .+-.-|.|... ++..++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4778888887788899999999888998888543 35688888754 455555554
No 263
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.05 E-value=34 Score=24.89 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCeeE-EEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 29 LKLHQIFSKFGDIQS-SKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 29 ~~L~~~F~~~G~I~~-vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
++|.+.|+.+..... |++ .+|..|.+.++|-.++..++
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHhh
Confidence 688888877544332 222 48999999999988887653
Done!