Query 039806
Match_columns 398
No_of_seqs 395 out of 2235
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-36 3.6E-41 289.7 13.2 218 9-240 36-277 (292)
2 3smz_A Protein raver-1, ribonu 100.0 4E-36 1.4E-40 284.7 16.0 211 12-240 20-250 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.9E-29 6.6E-34 229.1 18.9 131 6-138 7-138 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.9E-28 6.4E-33 218.6 19.4 152 10-235 9-165 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-28 4.8E-33 213.8 17.0 151 13-240 2-155 (168)
6 1fxl_A Paraneoplastic encephal 100.0 7.6E-28 2.6E-32 208.6 20.9 150 14-240 2-154 (167)
7 3md3_A Nuclear and cytoplasmic 100.0 3.9E-28 1.3E-32 210.2 18.6 151 15-240 1-153 (166)
8 3nmr_A Cugbp ELAV-like family 100.0 5.7E-28 1.9E-32 211.2 18.2 129 12-143 1-135 (175)
9 2qfj_A FBP-interacting repress 100.0 4.9E-28 1.7E-32 219.2 18.2 162 13-240 27-191 (216)
10 2cjk_A Nuclear polyadenylated 99.9 1.6E-27 5.4E-32 207.1 12.7 143 13-234 2-147 (167)
11 3tyt_A Heterogeneous nuclear r 99.9 5E-27 1.7E-31 211.9 14.7 76 13-92 3-79 (205)
12 2g4b_A Splicing factor U2AF 65 99.9 3.9E-26 1.3E-30 199.3 15.4 145 13-240 3-160 (172)
13 3sde_A Paraspeckle component 1 99.9 4.8E-26 1.6E-30 213.1 16.2 141 10-238 18-159 (261)
14 3pgw_A U1-A; protein-RNA compl 99.9 6E-25 2.1E-29 207.5 18.7 188 12-240 7-268 (282)
15 1fje_B Nucleolin RBD12, protei 99.9 5.9E-26 2E-30 198.9 10.8 127 4-133 3-129 (175)
16 2yh0_A Splicing factor U2AF 65 99.9 9.6E-25 3.3E-29 194.8 16.9 165 13-240 3-180 (198)
17 3smz_A Protein raver-1, ribonu 99.9 3.9E-25 1.3E-29 209.0 14.1 137 13-150 94-232 (284)
18 2adc_A Polypyrimidine tract-bi 99.9 3.5E-24 1.2E-28 196.5 18.6 181 7-241 27-214 (229)
19 4f25_A Polyadenylate-binding p 99.9 4.8E-25 1.6E-29 180.5 10.9 106 13-119 4-113 (115)
20 1qm9_A Polypyrimidine tract-bi 99.9 7.9E-24 2.7E-28 189.3 13.3 175 13-241 2-183 (198)
21 2ghp_A U4/U6 snRNA-associated 99.9 1.2E-23 4.1E-28 199.5 13.0 141 11-151 114-261 (292)
22 4fxv_A ELAV-like protein 1; RN 99.9 2.6E-21 9E-26 153.8 11.6 81 12-92 17-98 (99)
23 3s8s_A Histone-lysine N-methyl 99.8 1.5E-20 5.2E-25 152.3 11.2 84 13-96 5-89 (110)
24 2lxi_A RNA-binding protein 10; 99.8 4.8E-21 1.6E-25 149.9 5.5 83 14-96 1-86 (91)
25 2cq0_A Eukaryotic translation 99.8 9.1E-20 3.1E-24 145.7 11.5 91 6-96 7-98 (103)
26 3lqv_A PRE-mRNA branch site pr 99.8 5.4E-20 1.8E-24 150.1 9.3 103 13-129 7-109 (115)
27 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-19 5.2E-24 139.7 11.3 82 12-93 4-86 (87)
28 2lkz_A RNA-binding protein 5; 99.8 3.9E-20 1.3E-24 145.7 7.8 81 12-92 7-94 (95)
29 3md1_A Nuclear and cytoplasmic 99.8 1.9E-19 6.4E-24 137.9 11.3 81 14-94 1-82 (83)
30 2jrs_A RNA-binding protein 39; 99.8 1.5E-19 5.2E-24 145.9 11.2 89 6-94 18-107 (108)
31 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-19 8.1E-24 143.8 12.2 90 8-97 9-101 (105)
32 1p27_B RNA-binding protein 8A; 99.8 1.8E-19 6.3E-24 144.7 11.5 85 10-94 19-104 (106)
33 2d9p_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 143.9 11.2 90 7-97 8-97 (103)
34 2la6_A RNA-binding protein FUS 99.8 2.4E-19 8.3E-24 142.2 11.4 89 2-90 1-98 (99)
35 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-19 9.2E-24 146.0 11.9 88 10-97 21-109 (115)
36 2do4_A Squamous cell carcinoma 99.8 3.4E-19 1.2E-23 141.6 12.1 84 12-95 15-98 (100)
37 3p5t_L Cleavage and polyadenyl 99.8 5.6E-20 1.9E-24 143.4 7.4 81 15-95 2-85 (90)
38 2cqc_A Arginine/serine-rich sp 99.8 3.7E-19 1.3E-23 139.8 12.1 84 8-91 9-93 (95)
39 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 143.0 10.3 86 11-96 5-91 (99)
40 2dgo_A Cytotoxic granule-assoc 99.8 4.7E-19 1.6E-23 144.5 12.9 87 10-96 11-98 (115)
41 2dnm_A SRP46 splicing factor; 99.8 1.6E-19 5.5E-24 144.3 9.8 89 8-96 7-96 (103)
42 2dnz_A Probable RNA-binding pr 99.8 2.4E-19 8.3E-24 140.9 10.6 85 12-96 3-88 (95)
43 2ywk_A Putative RNA-binding pr 99.8 4.5E-19 1.5E-23 139.4 11.4 81 11-91 13-93 (95)
44 1x5u_A Splicing factor 3B subu 99.8 2.7E-19 9.2E-24 143.4 10.3 89 8-96 9-98 (105)
45 1oo0_B CG8781-PA, drosophila Y 99.8 3.4E-19 1.2E-23 144.2 10.8 86 10-95 22-108 (110)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.1E-19 7.3E-24 143.2 9.4 91 7-97 5-96 (102)
47 1x5t_A Splicing factor 3B subu 99.8 1.8E-19 6E-24 142.0 8.7 85 12-96 3-89 (96)
48 2dgs_A DAZ-associated protein 99.8 3.6E-19 1.2E-23 141.2 10.5 85 11-96 7-92 (99)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.6E-19 1.2E-23 136.9 10.1 79 12-90 5-84 (85)
50 1x4h_A RNA-binding protein 28; 99.8 4.9E-19 1.7E-23 143.3 11.4 90 8-97 9-105 (111)
51 2x1f_A MRNA 3'-END-processing 99.8 4E-19 1.4E-23 140.1 10.2 83 14-96 2-85 (96)
52 2hvz_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 143.9 7.8 94 15-112 1-100 (101)
53 3ns6_A Eukaryotic translation 99.8 8.1E-20 2.8E-24 145.5 6.2 83 13-95 5-95 (100)
54 2e5h_A Zinc finger CCHC-type a 99.8 4.2E-19 1.4E-23 139.3 10.2 82 9-90 11-93 (94)
55 1x5s_A Cold-inducible RNA-bind 99.8 3.1E-19 1.1E-23 142.3 9.6 87 10-96 8-95 (102)
56 2cq3_A RNA-binding protein 9; 99.8 1.2E-18 4.1E-23 139.2 12.8 88 8-96 9-96 (103)
57 2do0_A HnRNP M, heterogeneous 99.8 1.1E-18 3.9E-23 141.9 12.7 86 11-96 12-97 (114)
58 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-19 1.3E-23 142.7 9.7 91 7-97 6-100 (106)
59 2dh8_A DAZ-associated protein 99.8 9.1E-19 3.1E-23 140.4 11.4 86 10-96 12-98 (105)
60 3s7r_A Heterogeneous nuclear r 99.8 8.9E-19 3.1E-23 135.4 11.0 82 8-90 5-87 (87)
61 2cph_A RNA binding motif prote 99.8 6.9E-19 2.4E-23 141.5 10.7 87 10-96 11-100 (107)
62 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-18 4.4E-23 139.0 12.2 87 10-97 11-97 (103)
63 2kxn_B Transformer-2 protein h 99.8 4.6E-19 1.6E-23 147.8 9.9 85 10-94 42-127 (129)
64 2div_A TRNA selenocysteine ass 99.8 6.1E-19 2.1E-23 139.8 10.0 85 9-93 4-94 (99)
65 1u6f_A Tcubp1, RNA-binding pro 99.8 8.4E-19 2.9E-23 147.9 11.4 88 10-97 38-126 (139)
66 2dhg_A TRNA selenocysteine ass 99.8 7.9E-19 2.7E-23 140.4 10.5 86 12-97 7-94 (104)
67 2dng_A Eukaryotic translation 99.8 1.3E-18 4.5E-23 139.0 11.7 85 10-96 11-96 (103)
68 2cpf_A RNA binding motif prote 99.8 1E-18 3.5E-23 138.2 10.8 85 12-96 3-91 (98)
69 2fy1_A RNA-binding motif prote 99.8 6.6E-19 2.3E-23 144.1 10.0 85 12-96 5-89 (116)
70 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 4E-23 136.2 10.9 84 11-95 5-88 (92)
71 3ulh_A THO complex subunit 4; 99.8 1.5E-18 5.1E-23 139.6 11.7 81 11-91 26-106 (107)
72 4a8x_A RNA-binding protein wit 99.8 5.9E-19 2E-23 136.5 8.8 82 13-94 3-86 (88)
73 1wi8_A EIF-4B, eukaryotic tran 99.8 8.3E-19 2.8E-23 140.4 9.9 87 8-96 9-97 (104)
74 1s79_A Lupus LA protein; RRM, 99.8 4.7E-19 1.6E-23 141.8 8.3 81 13-94 10-90 (103)
75 3n9u_C Cleavage and polyadenyl 99.8 8.7E-19 3E-23 150.9 10.5 83 13-95 54-139 (156)
76 1sjq_A Polypyrimidine tract-bi 99.8 9.9E-19 3.4E-23 139.5 9.9 81 11-96 13-95 (105)
77 2cqd_A RNA-binding region cont 99.8 1.2E-18 4.1E-23 142.3 10.3 88 8-96 11-99 (116)
78 2khc_A Testis-specific RNP-typ 99.8 8.8E-19 3E-23 143.5 9.4 81 10-90 36-117 (118)
79 2err_A Ataxin-2-binding protei 99.8 8E-19 2.7E-23 141.9 8.9 86 7-93 22-107 (109)
80 1p1t_A Cleavage stimulation fa 99.8 4.2E-19 1.4E-23 142.0 7.2 84 13-96 7-91 (104)
81 3ucg_A Polyadenylate-binding p 99.8 1.5E-18 5.2E-23 134.6 10.2 80 13-93 5-85 (89)
82 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4.3E-23 137.4 9.8 85 9-95 4-92 (96)
83 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.3E-23 141.5 10.0 87 10-96 11-106 (113)
84 2wbr_A GW182, gawky, LD47780P; 99.8 1E-18 3.6E-23 133.5 8.7 73 13-90 6-78 (89)
85 1x4e_A RNA binding motif, sing 99.8 4.7E-19 1.6E-23 136.4 6.6 80 12-91 3-83 (85)
86 2rs2_A Musashi-1, RNA-binding 99.8 8.6E-19 2.9E-23 141.8 8.4 86 10-96 21-107 (109)
87 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.5E-23 137.0 9.7 83 7-94 14-98 (100)
88 2dgw_A Probable RNA-binding pr 99.8 2.5E-18 8.5E-23 134.1 10.7 82 11-94 7-88 (91)
89 2cqp_A RNA-binding protein 12; 99.8 1.2E-18 4.2E-23 137.8 8.9 83 11-93 12-95 (98)
90 2cq4_A RNA binding motif prote 99.8 7.1E-19 2.4E-23 143.2 7.7 84 13-97 24-108 (114)
91 2ek1_A RNA-binding protein 12; 99.8 8.6E-19 3E-23 137.8 7.8 81 11-91 12-93 (95)
92 2kt5_A RNA and export factor-b 99.8 2.4E-18 8.2E-23 142.3 10.9 84 11-94 32-115 (124)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.4E-19 1.5E-23 141.1 5.7 87 6-94 11-99 (100)
94 2db1_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 142.8 8.5 83 11-94 14-99 (118)
95 2m2b_A RNA-binding protein 10; 99.8 7.1E-19 2.4E-23 147.0 7.2 85 11-96 20-111 (131)
96 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.2E-18 1.4E-22 146.6 12.1 85 12-96 37-122 (156)
97 2cqg_A TDP-43, TAR DNA-binding 99.8 8.2E-18 2.8E-22 134.3 12.8 84 11-96 12-96 (103)
98 1x4a_A Splicing factor, argini 99.8 7.5E-18 2.6E-22 136.0 12.5 85 10-96 18-102 (109)
99 2mss_A Protein (musashi1); RNA 99.8 8.1E-19 2.8E-23 131.7 6.0 74 16-90 1-75 (75)
100 3ex7_B RNA-binding protein 8A; 99.8 2.4E-18 8.2E-23 142.6 9.5 87 10-96 18-105 (126)
101 2nlw_A Eukaryotic translation 99.7 2.6E-18 8.9E-23 137.9 9.2 85 8-93 9-100 (105)
102 2cpi_A CCR4-NOT transcription 99.7 2.6E-18 8.8E-23 139.4 9.1 88 7-94 8-102 (111)
103 1wez_A HnRNP H', FTP-3, hetero 99.7 2E-18 6.8E-23 137.9 8.1 84 9-94 10-93 (102)
104 2kn4_A Immunoglobulin G-bindin 99.7 4.1E-18 1.4E-22 146.8 10.3 85 12-96 68-153 (158)
105 2dnn_A RNA-binding protein 12; 99.7 1.9E-18 6.6E-23 139.5 7.6 81 11-93 13-93 (109)
106 1wg5_A Heterogeneous nuclear r 99.7 3.3E-18 1.1E-22 137.1 8.9 84 10-94 11-95 (104)
107 2fc8_A NCL protein; structure 99.7 6.4E-18 2.2E-22 134.6 10.5 90 5-97 6-96 (102)
108 2cpy_A RNA-binding protein 12; 99.7 1.4E-18 4.9E-23 141.5 6.8 86 10-96 11-97 (114)
109 1fj7_A Nucleolin RBD1, protein 99.7 4.7E-19 1.6E-23 141.1 3.8 93 2-96 5-98 (101)
110 1x5o_A RNA binding motif, sing 99.7 8.9E-18 3E-22 136.6 11.3 82 11-92 22-111 (114)
111 2hgl_A HNRPF protein, heteroge 99.7 2E-18 6.7E-23 145.0 7.5 83 11-94 41-126 (136)
112 1x4b_A Heterogeneous nuclear r 99.7 2.4E-18 8.2E-23 140.5 7.9 84 13-97 26-110 (116)
113 2lea_A Serine/arginine-rich sp 99.7 1.3E-18 4.4E-23 146.2 6.3 89 8-96 41-130 (135)
114 2ad9_A Polypyrimidine tract-bi 99.7 6.1E-18 2.1E-22 138.2 9.9 83 10-97 27-111 (119)
115 2krb_A Eukaryotic translation 99.7 2E-18 6.7E-23 131.8 6.3 74 14-88 1-81 (81)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5.1E-23 130.8 5.5 75 15-90 1-76 (77)
117 2dis_A Unnamed protein product 99.7 3.8E-18 1.3E-22 137.6 8.0 85 12-96 6-95 (109)
118 2ki2_A SS-DNA binding protein 99.7 8.9E-19 3E-23 136.3 4.1 80 15-95 2-82 (90)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8.1E-18 2.8E-22 141.7 10.3 81 10-90 59-140 (140)
120 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.4E-22 132.7 10.8 81 11-96 12-94 (101)
121 4f02_A Polyadenylate-binding p 99.7 3.4E-18 1.2E-22 154.7 8.4 110 2-112 91-201 (213)
122 1fjc_A Nucleolin RBD2, protein 99.7 4.1E-18 1.4E-22 134.2 7.7 91 1-95 3-93 (96)
123 2jwn_A Embryonic polyadenylate 99.7 8.9E-18 3E-22 138.7 9.9 81 13-94 35-116 (124)
124 2dnq_A RNA-binding protein 4B; 99.7 1.5E-17 5E-22 129.5 10.5 79 11-96 5-83 (90)
125 1x4d_A Matrin 3; structural ge 99.7 6.2E-18 2.1E-22 134.6 8.5 81 10-95 11-94 (102)
126 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.6E-22 144.3 11.9 86 11-96 69-155 (165)
127 2xs2_A Deleted in azoospermia- 99.7 6.2E-18 2.1E-22 134.7 7.8 82 13-96 8-89 (102)
128 2xnq_A Nuclear polyadenylated 99.7 2.1E-17 7.2E-22 130.6 10.7 79 8-93 16-95 (97)
129 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-17 3.9E-22 132.1 9.1 81 10-94 15-95 (97)
130 1wel_A RNA-binding protein 12; 99.7 2.6E-18 8.9E-23 142.1 5.6 83 11-94 22-105 (124)
131 2fc9_A NCL protein; structure 99.7 1.4E-17 4.6E-22 132.5 9.5 84 10-96 11-94 (101)
132 2a3j_A U1 small nuclear ribonu 99.7 9.6E-18 3.3E-22 139.2 8.8 84 12-97 27-114 (127)
133 2lmi_A GRSF-1, G-rich sequence 99.7 2.3E-18 7.9E-23 138.7 4.7 84 10-94 7-93 (107)
134 3q2s_C Cleavage and polyadenyl 99.7 7.3E-18 2.5E-22 154.3 8.5 81 13-93 67-150 (229)
135 2la4_A Nuclear and cytoplasmic 99.7 1.8E-17 6.1E-22 131.8 9.5 76 12-92 25-100 (101)
136 1x4c_A Splicing factor, argini 99.7 3.1E-17 1.1E-21 132.3 11.0 80 11-96 12-96 (108)
137 1wex_A Hypothetical protein (r 99.7 1.9E-17 6.4E-22 132.6 9.6 80 12-96 13-94 (104)
138 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.5E-22 131.6 8.8 83 8-95 9-91 (99)
139 2dha_A FLJ20171 protein; RRM d 99.7 6.9E-18 2.4E-22 139.2 6.9 82 11-93 20-105 (123)
140 2dgt_A RNA-binding protein 30; 99.7 3.9E-17 1.3E-21 127.6 10.9 80 10-96 6-85 (92)
141 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-17 3.9E-22 135.3 7.8 78 13-93 27-105 (111)
142 1iqt_A AUF1, heterogeneous nuc 99.7 4E-18 1.4E-22 127.8 4.6 74 16-90 1-75 (75)
143 2dnp_A RNA-binding protein 14; 99.7 4E-17 1.4E-21 127.0 10.4 80 10-96 5-84 (90)
144 3md3_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 139.7 12.2 90 2-91 75-165 (166)
145 1why_A Hypothetical protein ri 99.7 2.3E-17 7.9E-22 130.2 9.0 80 11-95 14-95 (97)
146 2cpx_A Hypothetical protein FL 99.7 6.2E-18 2.1E-22 137.7 5.7 85 12-96 23-108 (115)
147 1x4g_A Nucleolysin TIAR; struc 99.7 4.3E-17 1.5E-21 131.5 10.4 81 11-96 22-102 (109)
148 2kvi_A Nuclear polyadenylated 99.7 1.9E-17 6.5E-22 130.5 7.9 80 10-96 6-86 (96)
149 2cpd_A Apobec-1 stimulating pr 99.7 1E-16 3.4E-21 127.0 12.0 80 10-96 11-92 (99)
150 1nu4_A U1A RNA binding domain; 99.7 1.3E-17 4.4E-22 131.5 6.8 83 12-96 6-92 (97)
151 2ytc_A PRE-mRNA-splicing facto 99.7 4.9E-17 1.7E-21 124.9 9.9 75 11-90 9-84 (85)
152 2jvo_A Nucleolar protein 3; nu 99.7 4.5E-17 1.5E-21 131.4 10.0 79 11-96 28-106 (108)
153 2dgu_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 129.5 10.3 80 11-97 8-87 (103)
154 2hgn_A Heterogeneous nuclear r 99.7 3.8E-18 1.3E-22 143.7 3.5 83 10-94 42-124 (139)
155 2hgm_A HNRPF protein, heteroge 99.7 1.4E-17 4.8E-22 137.7 6.6 80 12-93 40-121 (126)
156 1x4f_A Matrin 3; structural ge 99.7 1.6E-17 5.6E-22 134.2 6.5 81 11-96 22-105 (112)
157 2lcw_A RNA-binding protein FUS 99.5 1.4E-18 4.8E-23 142.0 0.0 87 11-97 4-99 (116)
158 2cqh_A IGF-II mRNA-binding pro 99.7 3.3E-17 1.1E-21 128.2 7.7 80 11-96 5-86 (93)
159 2f3j_A RNA and export factor b 99.7 5.3E-17 1.8E-21 142.7 9.5 83 12-94 86-168 (177)
160 1whx_A Hypothetical protein ri 99.7 2.9E-17 9.9E-22 133.2 7.2 77 11-92 7-83 (111)
161 1wf1_A RNA-binding protein RAL 99.7 1.1E-16 3.6E-21 129.5 10.5 77 12-95 25-102 (110)
162 2i2y_A Fusion protein consists 99.7 7.4E-17 2.5E-21 137.8 9.2 80 10-93 69-148 (150)
163 1x5p_A Negative elongation fac 99.7 2E-16 6.8E-21 124.8 10.9 79 11-96 12-90 (97)
164 2kn4_A Immunoglobulin G-bindin 99.7 2.8E-16 9.7E-21 135.2 12.2 124 43-240 2-136 (158)
165 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.2E-21 123.6 10.4 79 11-95 5-84 (94)
166 3zzy_A Polypyrimidine tract-bi 99.7 2.9E-16 1E-20 129.9 11.4 80 12-95 26-108 (130)
167 1sjr_A Polypyrimidine tract-bi 99.7 2.3E-16 7.8E-21 135.5 10.7 82 11-95 43-126 (164)
168 2e44_A Insulin-like growth fac 99.7 1.5E-16 5.2E-21 125.1 8.2 81 10-93 11-92 (96)
169 2dyd_A Poly(A)-binding protein 99.7 4.2E-18 1.4E-22 127.5 -0.8 42 352-393 8-49 (85)
170 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.3E-21 123.2 8.0 75 12-92 3-77 (88)
171 2g4b_A Splicing factor U2AF 65 99.7 4E-16 1.4E-20 135.4 11.5 79 12-90 92-171 (172)
172 3egn_A RNA-binding protein 40; 99.7 1E-16 3.6E-21 135.7 7.2 85 12-96 43-133 (143)
173 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 129.2 8.1 76 15-90 3-93 (136)
174 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-16 4.6E-21 129.8 7.0 77 12-91 6-86 (114)
175 1nmr_A Poly(A)-binding protein 99.6 5.7E-18 2E-22 126.8 -1.2 43 352-394 9-51 (85)
176 2qfj_A FBP-interacting repress 99.6 5E-16 1.7E-20 139.9 11.0 85 12-96 123-208 (216)
177 2cq2_A Hypothetical protein LO 99.6 3.1E-16 1.1E-20 126.8 8.4 77 11-92 22-105 (114)
178 2yh0_A Splicing factor U2AF 65 99.6 7.4E-16 2.5E-20 136.9 11.8 83 12-94 112-195 (198)
179 3pgw_S U1-70K; protein-RNA com 99.6 4.5E-16 1.6E-20 155.4 11.3 88 7-94 95-183 (437)
180 3d2w_A TAR DNA-binding protein 99.6 4.8E-16 1.6E-20 120.8 8.7 77 11-95 8-86 (89)
181 2diu_A KIAA0430 protein; struc 99.6 5.4E-16 1.8E-20 119.6 8.8 75 13-96 7-87 (96)
182 3beg_B Splicing factor, argini 99.6 2E-16 6.7E-21 129.1 6.6 75 12-92 14-93 (115)
183 1l3k_A Heterogeneous nuclear r 99.6 8.9E-16 3.1E-20 136.1 10.5 84 13-97 103-187 (196)
184 2pe8_A Splicing factor 45; RRM 99.6 1.8E-15 6.1E-20 121.2 11.2 83 10-92 4-93 (105)
185 3nmr_A Cugbp ELAV-like family 99.6 9.1E-16 3.1E-20 133.3 10.2 78 13-90 94-174 (175)
186 2e5i_A Heterogeneous nuclear r 99.6 2.4E-15 8.3E-20 123.8 11.6 78 12-94 23-103 (124)
187 2cjk_A Nuclear polyadenylated 99.6 3E-16 1E-20 135.6 6.3 80 13-93 86-166 (167)
188 1ifw_A Polyadenylate-binding p 99.6 1.2E-17 4.2E-22 126.9 -2.1 42 352-393 6-49 (92)
189 1b7f_A Protein (SXL-lethal pro 99.6 1.8E-15 6.2E-20 130.6 11.2 80 11-90 86-168 (168)
190 2hzc_A Splicing factor U2AF 65 99.6 8.2E-16 2.8E-20 118.5 8.0 71 13-89 5-86 (87)
191 1fxl_A Paraneoplastic encephal 99.6 2E-15 6.8E-20 130.0 10.8 79 12-90 86-167 (167)
192 1wf0_A TDP-43, TAR DNA-binding 99.6 3.5E-16 1.2E-20 121.1 4.9 79 12-96 3-81 (88)
193 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.4E-20 132.8 9.1 88 2-93 87-174 (175)
194 2voo_A Lupus LA protein; RNA-b 99.6 2.4E-15 8.3E-20 133.9 10.3 79 14-93 109-187 (193)
195 2bz2_A Negative elongation fac 99.6 2E-15 6.8E-20 124.2 8.3 78 12-96 37-114 (121)
196 3kuj_A Polyadenylate-binding p 99.6 7.4E-17 2.5E-21 121.9 -0.7 42 352-393 6-47 (88)
197 1g9l_A Polyadenylate-binding p 99.6 1.4E-15 4.7E-20 125.2 4.2 42 353-394 53-94 (144)
198 2dit_A HIV TAT specific factor 99.6 1.7E-14 5.8E-19 116.9 10.5 84 9-95 10-104 (112)
199 2i2y_A Fusion protein consists 99.5 2.5E-14 8.7E-19 121.9 10.1 93 44-138 3-108 (150)
200 1jmt_A Splicing factor U2AF 35 99.5 4E-15 1.4E-19 119.0 4.7 72 19-90 20-103 (104)
201 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.7E-19 133.1 8.0 79 12-95 132-231 (240)
202 3sde_A Paraspeckle component 1 99.5 4.7E-14 1.6E-18 131.4 11.1 84 13-96 95-182 (261)
203 3pgw_A U1-A; protein-RNA compl 99.5 7.2E-14 2.5E-18 131.3 10.6 76 12-91 205-281 (282)
204 3v4m_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 113.5 7.3 81 13-93 4-97 (105)
205 3tyt_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 127.7 7.8 76 13-89 122-203 (205)
206 3ue2_A Poly(U)-binding-splicin 99.5 9E-14 3.1E-18 113.5 8.4 82 11-92 17-108 (118)
207 1qm9_A Polypyrimidine tract-bi 99.4 1.4E-13 4.7E-18 122.4 7.6 76 13-92 119-196 (198)
208 2adc_A Polypyrimidine tract-bi 99.4 2E-13 6.8E-18 124.7 8.6 76 14-93 151-228 (229)
209 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.5E-13 3.3E-17 104.1 9.7 79 11-95 7-92 (100)
210 4fxv_A ELAV-like protein 1; RN 99.4 4.5E-13 1.5E-17 106.0 7.0 65 176-240 19-85 (99)
211 3s8s_A Histone-lysine N-methyl 99.4 8.3E-13 2.8E-17 106.6 6.9 67 175-241 5-73 (110)
212 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.9E-17 126.0 8.9 76 11-91 15-97 (345)
213 2lkz_A RNA-binding protein 5; 99.3 5.2E-13 1.8E-17 104.8 4.4 63 177-239 10-76 (95)
214 2lxi_A RNA-binding protein 10; 99.3 2.2E-13 7.5E-18 106.1 2.0 61 177-237 2-65 (91)
215 1s79_A Lupus LA protein; RRM, 99.3 3E-12 1E-16 102.0 7.4 61 174-234 9-70 (103)
216 3s6e_A RNA-binding protein 39; 99.3 5E-12 1.7E-16 102.5 8.5 78 12-92 5-92 (114)
217 3ns6_A Eukaryotic translation 99.3 2.6E-12 9E-17 101.7 5.4 67 174-240 4-78 (100)
218 1i2t_A HYD protein; four alpha 99.3 1.4E-13 4.7E-18 96.8 -2.0 28 366-393 1-28 (61)
219 2ywk_A Putative RNA-binding pr 99.3 9.1E-12 3.1E-16 97.2 7.6 68 173-240 13-81 (95)
220 4f25_A Polyadenylate-binding p 99.3 4.9E-12 1.7E-16 102.7 6.0 64 176-240 5-69 (115)
221 3p5t_L Cleavage and polyadenyl 99.3 4.7E-12 1.6E-16 98.1 5.5 64 177-240 2-69 (90)
222 3bs9_A Nucleolysin TIA-1 isofo 99.2 1.1E-11 3.6E-16 95.1 6.9 65 175-239 5-71 (87)
223 2dnh_A Bruno-like 5, RNA bindi 99.2 9.4E-12 3.2E-16 99.1 6.8 66 175-240 14-80 (105)
224 1x4e_A RNA binding motif, sing 99.2 7.6E-12 2.6E-16 95.6 5.8 66 175-240 4-71 (85)
225 3s7r_A Heterogeneous nuclear r 99.2 9.2E-12 3.2E-16 95.6 6.2 63 173-235 8-72 (87)
226 3ucg_A Polyadenylate-binding p 99.2 1.7E-11 5.8E-16 94.4 7.5 65 174-239 4-70 (89)
227 2do4_A Squamous cell carcinoma 99.2 1.4E-11 4.8E-16 97.2 7.1 66 175-240 16-82 (100)
228 2cqc_A Arginine/serine-rich sp 99.2 2.1E-11 7.3E-16 95.1 7.5 67 174-240 13-81 (95)
229 2do0_A HnRNP M, heterogeneous 99.2 1.5E-11 5.1E-16 99.5 6.8 67 174-240 13-80 (114)
230 2x1f_A MRNA 3'-END-processing 99.2 1.4E-11 4.7E-16 96.6 6.4 65 176-240 2-68 (96)
231 1wez_A HnRNP H', FTP-3, hetero 99.2 7.6E-12 2.6E-16 99.4 4.9 58 175-233 14-72 (102)
232 2rs2_A Musashi-1, RNA-binding 99.2 1.1E-11 3.9E-16 99.6 6.0 65 172-236 21-87 (109)
233 2dhg_A TRNA selenocysteine ass 99.2 1.3E-11 4.5E-16 98.1 6.3 67 174-240 7-75 (104)
234 3md1_A Nuclear and cytoplasmic 99.2 1.9E-11 6.7E-16 92.8 7.0 64 177-240 2-67 (83)
235 2dnz_A Probable RNA-binding pr 99.2 2E-11 6.9E-16 95.3 7.2 66 175-240 4-71 (95)
236 1whw_A Hypothetical protein ri 99.2 1.4E-11 4.9E-16 96.9 6.1 66 175-240 7-74 (99)
237 1sjq_A Polypyrimidine tract-bi 99.2 1.3E-11 4.5E-16 98.2 5.7 61 173-238 13-74 (105)
238 3ulh_A THO complex subunit 4; 99.2 2.1E-11 7.3E-16 97.3 6.9 68 173-240 26-94 (107)
239 3mdf_A Peptidyl-prolyl CIS-tra 99.2 1.5E-11 5.3E-16 93.8 5.5 67 174-240 5-73 (85)
240 2fy1_A RNA-binding motif prote 99.2 1.3E-11 4.5E-16 100.4 5.4 67 174-240 5-72 (116)
241 2dgp_A Bruno-like 4, RNA bindi 99.2 1E-11 3.5E-16 99.0 4.7 67 174-240 11-79 (106)
242 2dgs_A DAZ-associated protein 99.2 2.3E-11 8E-16 95.7 6.7 63 174-237 8-72 (99)
243 1x4h_A RNA-binding protein 28; 99.2 2E-11 6.9E-16 98.1 6.4 63 175-237 14-78 (111)
244 2cpz_A CUG triplet repeat RNA- 99.2 1.8E-11 6.3E-16 99.2 6.2 66 175-240 24-91 (115)
245 1wg5_A Heterogeneous nuclear r 99.2 1.5E-11 5.2E-16 97.9 5.5 61 175-235 14-76 (104)
246 2cq4_A RNA binding motif prote 99.2 2.1E-11 7.1E-16 98.7 6.4 66 174-240 23-90 (114)
247 2div_A TRNA selenocysteine ass 99.2 1.7E-11 5.8E-16 96.5 5.7 66 174-239 7-75 (99)
248 2e5h_A Zinc finger CCHC-type a 99.2 2.7E-11 9.3E-16 94.3 6.7 65 175-239 15-81 (94)
249 2cq0_A Eukaryotic translation 99.2 1.7E-11 6E-16 97.2 5.6 67 174-240 13-81 (103)
250 1x5u_A Splicing factor 3B subu 99.2 2E-11 6.9E-16 97.1 5.9 67 174-240 13-81 (105)
251 2d9p_A Polyadenylate-binding p 99.2 2.6E-11 9.1E-16 96.1 6.5 65 175-240 14-79 (103)
252 2dh8_A DAZ-associated protein 99.2 2.9E-11 9.9E-16 96.3 6.8 62 174-235 14-77 (105)
253 1uaw_A Mouse-musashi-1; RNP-ty 99.2 1.1E-11 3.6E-16 92.8 3.9 60 178-237 2-63 (77)
254 1p27_B RNA-binding protein 8A; 99.2 3.1E-11 1.1E-15 96.2 6.9 66 175-240 22-89 (106)
255 2dnn_A RNA-binding protein 12; 99.2 2.2E-11 7.6E-16 97.9 6.0 60 176-237 16-76 (109)
256 2dgo_A Cytotoxic granule-assoc 99.2 3E-11 1E-15 97.9 6.7 67 174-240 13-81 (115)
257 3n9u_C Cleavage and polyadenyl 99.2 2.6E-11 9E-16 103.9 6.6 65 175-239 54-122 (156)
258 2kxn_B Transformer-2 protein h 99.2 3.9E-11 1.3E-15 99.5 7.4 67 174-240 44-112 (129)
259 2dha_A FLJ20171 protein; RRM d 99.2 1.4E-11 4.9E-16 101.2 4.7 62 174-235 21-87 (123)
260 2cqg_A TDP-43, TAR DNA-binding 99.2 3.5E-11 1.2E-15 95.5 6.7 61 175-235 14-76 (103)
261 2dnm_A SRP46 splicing factor; 99.2 2.3E-11 7.7E-16 96.6 5.6 66 175-240 12-79 (103)
262 2khc_A Testis-specific RNP-typ 99.2 2.6E-11 9E-16 98.7 5.9 65 175-239 39-105 (118)
263 2dgv_A HnRNP M, heterogeneous 99.2 3.9E-11 1.3E-15 93.0 6.6 65 175-240 7-72 (92)
264 2lea_A Serine/arginine-rich sp 99.2 2.3E-11 8E-16 101.7 5.7 79 56-139 5-83 (135)
265 2krb_A Eukaryotic translation 99.2 1.7E-11 5.8E-16 92.9 4.4 63 177-240 2-71 (81)
266 1x5s_A Cold-inducible RNA-bind 99.2 2.4E-11 8.2E-16 96.2 5.4 66 175-240 11-78 (102)
267 2cqd_A RNA-binding region cont 99.2 1.9E-11 6.5E-16 99.2 4.9 64 174-237 15-80 (116)
268 1x5o_A RNA binding motif, sing 99.2 3.9E-11 1.3E-15 97.0 6.7 66 175-240 24-90 (114)
269 1p1t_A Cleavage stimulation fa 99.2 2.5E-11 8.5E-16 96.4 5.4 67 174-240 6-74 (104)
270 2cqb_A Peptidyl-prolyl CIS-tra 99.2 1.9E-11 6.6E-16 96.7 4.6 66 175-240 11-78 (102)
271 2la6_A RNA-binding protein FUS 99.2 4E-11 1.4E-15 94.4 6.4 66 175-240 12-87 (99)
272 2cph_A RNA binding motif prote 99.2 4.2E-11 1.4E-15 95.5 6.5 66 174-239 13-82 (107)
273 1x4b_A Heterogeneous nuclear r 99.2 4.3E-11 1.5E-15 97.1 6.5 62 174-235 25-88 (116)
274 2cpy_A RNA-binding protein 12; 99.2 1.4E-11 4.9E-16 99.8 3.7 62 174-235 13-76 (114)
275 2m2b_A RNA-binding protein 10; 99.1 1.2E-11 4.2E-16 102.8 3.3 64 175-239 22-89 (131)
276 1x5t_A Splicing factor 3B subu 99.1 1.7E-11 5.7E-16 95.9 3.8 66 175-240 4-72 (96)
277 2mss_A Protein (musashi1); RNA 99.1 2.5E-11 8.4E-16 90.4 4.6 56 179-234 2-59 (75)
278 3r27_A HnRNP L, heterogeneous 99.1 5.3E-11 1.8E-15 93.7 6.6 61 174-239 19-80 (100)
279 2hgn_A Heterogeneous nuclear r 99.1 1.5E-11 5.1E-16 103.2 3.7 59 174-233 44-103 (139)
280 2cq3_A RNA-binding protein 9; 99.1 6.8E-11 2.3E-15 93.8 7.3 66 174-240 13-79 (103)
281 2kt5_A RNA and export factor-b 99.1 4E-11 1.4E-15 98.5 6.0 67 174-240 33-100 (124)
282 1u6f_A Tcubp1, RNA-binding pro 99.1 3.3E-11 1.1E-15 101.0 5.5 67 174-240 40-108 (139)
283 1oo0_B CG8781-PA, drosophila Y 99.1 5.2E-11 1.8E-15 95.6 6.4 67 174-240 24-92 (110)
284 1iqt_A AUF1, heterogeneous nuc 99.1 2.2E-11 7.5E-16 90.7 3.9 58 178-235 1-60 (75)
285 2jwn_A Embryonic polyadenylate 99.1 5.2E-11 1.8E-15 97.7 6.6 64 175-239 35-100 (124)
286 2hgl_A HNRPF protein, heteroge 99.1 2.2E-11 7.5E-16 101.9 4.2 63 175-238 43-109 (136)
287 2hgm_A HNRPF protein, heteroge 99.1 3.7E-11 1.3E-15 99.1 5.3 61 174-235 40-103 (126)
288 2xs2_A Deleted in azoospermia- 99.1 2.7E-11 9.3E-16 95.9 4.4 60 175-234 8-68 (102)
289 2cpf_A RNA binding motif prote 99.1 3.7E-11 1.3E-15 94.3 5.0 66 175-240 4-74 (98)
290 2jrs_A RNA-binding protein 39; 99.1 5.6E-11 1.9E-15 95.3 6.1 66 175-240 25-92 (108)
291 2dng_A Eukaryotic translation 99.1 6E-11 2E-15 94.1 6.1 62 175-238 14-77 (103)
292 2j76_E EIF-4B, EIF4B, eukaryot 99.1 2.9E-11 1E-15 95.5 4.2 65 173-239 16-83 (100)
293 1wi8_A EIF-4B, eukaryotic tran 99.1 5.5E-11 1.9E-15 94.5 5.7 63 175-239 14-79 (104)
294 2wbr_A GW182, gawky, LD47780P; 99.1 5.2E-11 1.8E-15 90.9 5.2 59 177-240 8-67 (89)
295 2cqi_A Nucleolysin TIAR; RNA r 99.1 6.7E-11 2.3E-15 93.8 5.9 66 174-240 13-79 (103)
296 2db1_A Heterogeneous nuclear r 99.1 2.9E-11 1E-15 98.6 3.9 63 175-238 16-82 (118)
297 2ad9_A Polypyrimidine tract-bi 99.1 5.3E-11 1.8E-15 97.0 5.3 59 175-238 30-89 (119)
298 2cq1_A PTB-like protein L; RRM 99.1 7.1E-11 2.4E-15 93.6 5.9 58 175-237 14-72 (101)
299 3ex7_B RNA-binding protein 8A; 99.1 7.7E-11 2.6E-15 97.0 6.2 66 175-240 21-88 (126)
300 2ek1_A RNA-binding protein 12; 99.1 3.1E-11 1.1E-15 94.1 3.4 66 175-240 14-81 (95)
301 1x4d_A Matrin 3; structural ge 99.1 5.2E-11 1.8E-15 94.4 4.5 59 175-238 14-74 (102)
302 1h2v_Z 20 kDa nuclear CAP bind 99.1 1.1E-10 3.7E-15 99.9 6.8 67 174-240 37-105 (156)
303 2err_A Ataxin-2-binding protei 99.1 7E-11 2.4E-15 94.9 5.2 67 173-240 26-93 (109)
304 3q2s_C Cleavage and polyadenyl 99.1 7E-11 2.4E-15 107.8 5.8 66 175-240 67-136 (229)
305 4a8x_A RNA-binding protein wit 99.1 6.3E-11 2.1E-15 90.9 4.7 65 176-240 4-71 (88)
306 1wex_A Hypothetical protein (r 99.1 1.1E-10 3.9E-15 92.9 6.3 59 175-238 14-73 (104)
307 2ki2_A SS-DNA binding protein 99.1 2.7E-11 9.2E-16 93.6 2.2 63 177-240 2-66 (90)
308 3d2w_A TAR DNA-binding protein 99.1 9.1E-11 3.1E-15 90.7 5.1 55 173-231 8-63 (89)
309 2dgw_A Probable RNA-binding pr 99.1 9.7E-11 3.3E-15 90.6 5.2 63 175-239 9-72 (91)
310 2cpe_A RNA-binding protein EWS 99.1 8.4E-11 2.9E-15 94.9 5.1 66 175-240 14-89 (113)
311 2cqp_A RNA-binding protein 12; 99.1 3.9E-11 1.3E-15 94.2 2.9 64 176-239 15-80 (98)
312 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.2E-10 4E-15 97.5 6.0 65 175-239 62-128 (140)
313 2dnr_A Synaptojanin-1; RRM dom 99.1 2.4E-10 8.3E-15 87.2 7.1 73 13-93 6-86 (91)
314 2lmi_A GRSF-1, G-rich sequence 99.1 4.6E-11 1.6E-15 95.6 2.8 60 175-234 10-73 (107)
315 2nlw_A Eukaryotic translation 99.1 9.5E-11 3.2E-15 93.4 4.6 65 175-240 14-85 (105)
316 2dgx_A KIAA0430 protein; RRM d 99.1 1.5E-10 5E-15 90.7 5.6 63 176-240 9-76 (96)
317 2dis_A Unnamed protein product 99.1 9.3E-11 3.2E-15 93.9 4.5 63 175-237 7-73 (109)
318 3pgw_S U1-70K; protein-RNA com 99.1 4.1E-10 1.4E-14 112.3 10.1 64 177-240 103-168 (437)
319 2dnl_A Cytoplasmic polyadenyla 99.1 8.2E-11 2.8E-15 95.3 4.0 62 174-236 6-72 (114)
320 2cpi_A CCR4-NOT transcription 99.0 1.4E-10 4.8E-15 93.4 4.6 66 175-240 14-87 (111)
321 1x4f_A Matrin 3; structural ge 99.0 1.3E-10 4.3E-15 93.7 4.1 60 174-238 23-84 (112)
322 1x4a_A Splicing factor, argini 99.0 3.6E-10 1.2E-14 90.5 6.4 64 175-240 21-85 (109)
323 2voo_A Lupus LA protein; RNA-b 99.0 5.7E-10 2E-14 99.0 7.9 63 174-236 107-170 (193)
324 1rk8_A CG8781-PA, CG8781-PA pr 99.0 4.2E-10 1.4E-14 97.2 6.9 66 175-240 71-138 (165)
325 2f3j_A RNA and export factor b 99.0 2.6E-10 9E-15 99.8 5.2 67 174-240 86-153 (177)
326 3lqv_A PRE-mRNA branch site pr 99.0 5.5E-10 1.9E-14 90.3 6.6 64 175-240 7-71 (115)
327 1owx_A Lupus LA protein, SS-B, 99.0 7.1E-10 2.4E-14 90.1 7.1 79 8-91 12-94 (121)
328 2j8a_A Histone-lysine N-methyl 99.0 2.4E-10 8.4E-15 93.1 4.1 49 177-225 3-57 (136)
329 1wel_A RNA-binding protein 12; 99.0 2.1E-10 7.2E-15 94.2 3.8 63 175-238 24-88 (124)
330 1x4c_A Splicing factor, argini 99.0 4.9E-10 1.7E-14 89.7 5.8 60 175-240 14-74 (108)
331 2cq2_A Hypothetical protein LO 99.0 2.2E-10 7.6E-15 92.4 3.6 63 173-240 22-87 (114)
332 2fc9_A NCL protein; structure 99.0 3.5E-10 1.2E-14 89.3 4.7 64 174-240 13-77 (101)
333 2hvz_A Splicing factor, argini 99.0 4.4E-10 1.5E-14 88.7 5.1 59 178-240 2-61 (101)
334 2a3j_A U1 small nuclear ribonu 99.0 4.4E-10 1.5E-14 92.8 5.2 65 174-240 27-96 (127)
335 1why_A Hypothetical protein ri 99.0 7E-10 2.4E-14 86.8 6.1 62 174-240 15-77 (97)
336 2lcw_A RNA-binding protein FUS 98.5 6.5E-11 2.2E-15 96.1 0.0 66 174-239 5-80 (116)
337 1wf0_A TDP-43, TAR DNA-binding 99.0 2.9E-10 9.9E-15 87.4 3.4 54 175-232 4-58 (88)
338 2la4_A Nuclear and cytoplasmic 98.9 8.3E-10 2.8E-14 87.0 5.8 61 175-240 26-87 (101)
339 3beg_B Splicing factor, argini 98.9 6.2E-10 2.1E-14 90.2 5.1 62 174-241 14-76 (115)
340 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4.2E-14 83.7 6.4 71 12-90 13-92 (95)
341 1whx_A Hypothetical protein ri 98.9 7E-10 2.4E-14 89.4 5.1 62 174-240 8-70 (111)
342 2cpj_A Non-POU domain-containi 98.9 9.8E-10 3.4E-14 86.3 5.8 61 175-240 14-75 (99)
343 2dnq_A RNA-binding protein 4B; 98.9 1.2E-09 4E-14 84.3 6.1 59 174-239 6-65 (90)
344 1x4g_A Nucleolysin TIAR; struc 98.9 1E-09 3.5E-14 87.8 5.7 63 173-240 22-85 (109)
345 3dxb_A Thioredoxin N-terminall 98.9 1.8E-09 6.2E-14 97.7 7.9 67 26-92 141-212 (222)
346 2jvr_A Nucleolar protein 3; RN 98.9 6.1E-10 2.1E-14 89.7 3.9 63 175-240 27-91 (111)
347 2ytc_A PRE-mRNA-splicing facto 98.9 1.3E-09 4.5E-14 82.9 5.6 58 174-236 10-68 (85)
348 1nu4_A U1A RNA binding domain; 98.9 4.1E-10 1.4E-14 88.0 2.6 65 174-240 6-75 (97)
349 2pe8_A Splicing factor 45; RRM 98.9 2.4E-09 8.1E-14 85.3 7.1 68 174-241 6-81 (105)
350 1fj7_A Nucleolin RBD1, protein 98.9 1.1E-10 3.8E-15 92.1 -1.4 64 175-240 16-81 (101)
351 1sjr_A Polypyrimidine tract-bi 98.9 2.1E-09 7.4E-14 92.0 6.3 61 178-241 48-109 (164)
352 2jvo_A Nucleolar protein 3; nu 98.9 1.8E-09 6.2E-14 86.5 5.5 61 173-240 28-89 (108)
353 2xnq_A Nuclear polyadenylated 98.9 3.4E-09 1.2E-13 83.1 6.6 61 173-240 19-81 (97)
354 2kvi_A Nuclear polyadenylated 98.9 2.4E-09 8.3E-14 83.6 5.6 61 173-240 7-69 (96)
355 2dgu_A Heterogeneous nuclear r 98.8 2.3E-09 8E-14 84.8 5.3 59 175-240 10-69 (103)
356 1fjc_A Nucleolin RBD2, protein 98.8 8.8E-10 3E-14 86.0 2.6 64 173-240 13-77 (96)
357 1wf1_A RNA-binding protein RAL 98.8 3.1E-09 1.1E-13 85.2 5.7 59 175-240 26-86 (110)
358 2e5j_A Methenyltetrahydrofolat 98.8 2.3E-09 7.8E-14 83.9 4.7 62 175-240 18-80 (97)
359 2dnp_A RNA-binding protein 14; 98.8 3.2E-09 1.1E-13 81.8 5.4 60 174-240 7-67 (90)
360 3zzy_A Polypyrimidine tract-bi 98.8 5.1E-09 1.7E-13 86.4 6.9 60 179-242 31-92 (130)
361 2cpx_A Hypothetical protein FL 98.8 1.7E-09 5.8E-14 87.3 3.8 63 175-240 24-91 (115)
362 2fc8_A NCL protein; structure 98.8 3.8E-09 1.3E-13 83.3 5.5 64 174-240 13-78 (102)
363 2hzc_A Splicing factor U2AF 65 98.8 4E-09 1.4E-13 80.5 5.4 60 174-239 4-75 (87)
364 2dgt_A RNA-binding protein 30; 98.8 4.2E-09 1.4E-13 81.5 5.4 60 174-240 8-68 (92)
365 1wg1_A KIAA1579 protein, homol 98.8 3.1E-09 1.1E-13 81.6 4.1 60 175-240 4-64 (88)
366 1jmt_A Splicing factor U2AF 35 98.8 3.4E-09 1.2E-13 84.3 4.1 52 189-240 39-92 (104)
367 2cpd_A Apobec-1 stimulating pr 98.8 9.5E-09 3.2E-13 80.6 6.2 60 175-241 14-76 (99)
368 2e5i_A Heterogeneous nuclear r 98.8 1.4E-08 4.8E-13 83.2 7.3 58 179-241 28-87 (124)
369 3egn_A RNA-binding protein 40; 98.7 2E-09 6.8E-14 90.5 1.9 67 174-240 43-116 (143)
370 2cqh_A IGF-II mRNA-binding pro 98.7 3.6E-09 1.2E-13 82.0 3.1 58 175-238 7-66 (93)
371 2e44_A Insulin-like growth fac 98.7 4.9E-09 1.7E-13 81.7 3.9 63 175-240 14-78 (96)
372 2e5g_A U6 snRNA-specific termi 98.7 1.5E-08 5.2E-13 78.7 6.4 58 175-238 7-66 (94)
373 1x5p_A Negative elongation fac 98.7 1.2E-08 4.1E-13 79.8 5.7 59 175-240 14-73 (97)
374 3v4m_A Splicing factor U2AF 65 98.7 1.2E-08 4E-13 81.3 5.2 66 175-240 4-83 (105)
375 3u1l_A PRE-mRNA-splicing facto 98.7 1.6E-08 5.5E-13 92.2 6.2 64 173-241 131-204 (240)
376 2bz2_A Negative elongation fac 98.6 1.7E-08 5.6E-13 82.6 4.2 60 174-240 37-97 (121)
377 2d9o_A DNAJ (HSP40) homolog, s 98.6 4.6E-08 1.6E-12 77.0 6.5 47 185-235 26-73 (100)
378 3ue2_A Poly(U)-binding-splicin 98.6 3.9E-08 1.3E-12 79.9 6.2 67 174-240 18-95 (118)
379 3tht_A Alkylated DNA repair pr 98.6 2.9E-08 1E-12 95.3 4.4 64 173-241 15-81 (345)
380 2diu_A KIAA0430 protein; struc 98.5 8.8E-08 3E-12 73.8 5.2 56 176-240 8-70 (96)
381 2dit_A HIV TAT specific factor 98.5 1.3E-07 4.3E-12 76.0 5.3 64 174-240 13-88 (112)
382 2l9w_A U4/U6 snRNA-associated- 98.3 3.9E-06 1.3E-10 65.7 8.8 74 12-90 19-97 (117)
383 3s6e_A RNA-binding protein 39; 98.2 1.1E-06 3.9E-11 70.7 4.9 48 190-240 31-79 (114)
384 1owx_A Lupus LA protein, SS-B, 98.1 1.8E-06 6.2E-11 69.9 4.4 57 176-236 18-76 (121)
385 2dhx_A Poly (ADP-ribose) polym 98.1 1.8E-05 6.3E-10 61.3 9.5 90 11-116 5-99 (104)
386 3dxb_A Thioredoxin N-terminall 97.7 3.7E-05 1.3E-09 69.1 5.8 54 187-240 140-199 (222)
387 1wey_A Calcipressin 1; structu 97.5 0.00023 7.9E-09 55.4 6.9 75 13-92 4-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00061 2.1E-08 52.0 8.2 68 15-82 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00064 2.2E-08 52.1 8.1 55 14-76 16-70 (100)
390 2l9w_A U4/U6 snRNA-associated- 97.3 0.00027 9.1E-09 55.3 5.2 64 174-241 19-87 (117)
391 1wwh_A Nucleoporin 35, nucleop 97.0 0.0025 8.5E-08 50.9 8.1 74 11-91 21-95 (119)
392 3p3d_A Nucleoporin 53; structu 96.9 0.00094 3.2E-08 54.1 5.1 79 12-92 5-98 (132)
393 2dnr_A Synaptojanin-1; RRM dom 96.8 0.00096 3.3E-08 50.7 4.1 43 191-240 30-72 (91)
394 3ctr_A Poly(A)-specific ribonu 96.8 0.0025 8.6E-08 48.9 6.0 53 16-76 8-60 (101)
395 1ufw_A Synaptojanin 2; RNP dom 96.2 0.0037 1.3E-07 47.8 3.9 43 191-240 39-81 (95)
396 2l08_A Regulator of nonsense t 95.8 0.0058 2E-07 46.9 3.3 70 13-82 8-80 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.7 0.0054 1.9E-07 60.7 3.5 56 14-74 53-108 (464)
398 1wey_A Calcipressin 1; structu 93.0 0.077 2.6E-06 41.2 3.6 63 176-242 5-72 (104)
399 3d45_A Poly(A)-specific ribonu 91.0 0.49 1.7E-05 47.5 7.8 64 3-76 431-494 (507)
400 1uw4_A UPF3X; nonsense mediate 90.8 0.45 1.5E-05 36.0 5.6 60 178-237 3-66 (91)
401 1wwh_A Nucleoporin 35, nucleop 90.8 0.51 1.7E-05 37.5 6.2 56 176-236 24-79 (119)
402 2dhx_A Poly (ADP-ribose) polym 89.8 0.46 1.6E-05 36.7 4.9 54 176-235 8-66 (104)
403 3pq1_A Poly(A) RNA polymerase; 86.7 0.31 1.1E-05 48.2 2.7 54 176-235 53-108 (464)
404 1whv_A Poly(A)-specific ribonu 84.7 1.1 3.8E-05 34.1 4.3 52 178-236 18-69 (100)
405 3ctr_A Poly(A)-specific ribonu 84.6 1.1 3.7E-05 34.3 4.2 52 178-236 8-59 (101)
406 2l08_A Regulator of nonsense t 73.2 1.9 6.6E-05 32.8 2.5 56 178-234 11-71 (97)
407 3j21_T 50S ribosomal protein L 67.6 14 0.00049 27.3 6.1 59 15-75 23-83 (86)
408 2z73_A Rhodopsin; visual pigme 67.0 1.2 3.9E-05 43.3 0.0 7 191-197 324-330 (448)
409 4eyt_A Telomerase associated p 60.4 49 0.0017 24.5 8.3 57 13-76 11-67 (129)
410 3p3d_A Nucleoporin 53; structu 58.8 3.7 0.00013 33.1 1.5 59 177-236 8-82 (132)
411 2g0c_A ATP-dependent RNA helic 52.8 35 0.0012 24.0 5.9 59 24-90 11-74 (76)
412 1vq8_S 50S ribosomal protein L 51.0 30 0.001 25.4 5.3 57 15-73 22-80 (85)
413 3u5e_X 60S ribosomal protein L 49.5 44 0.0015 27.1 6.5 58 16-75 80-139 (142)
414 4a17_R RPL23A, 60S ribosomal p 48.9 31 0.0011 28.2 5.6 59 15-75 87-147 (150)
415 3ts2_A Protein LIN-28 homolog 41.0 3.7 0.00013 33.8 -1.1 29 29-64 2-30 (148)
416 3iz5_X 60S ribosomal protein L 39.2 42 0.0014 27.5 4.9 56 16-73 90-147 (152)
417 4e8u_A Putative uncharacterize 39.1 60 0.002 27.2 6.0 50 17-68 15-75 (172)
418 1xn9_A 30S ribosomal protein S 39.0 52 0.0018 25.0 5.2 46 24-70 28-79 (101)
419 2zkr_s 60S ribosomal protein L 37.7 74 0.0025 26.2 6.2 57 16-74 94-152 (156)
420 1ywx_A 30S ribosomal protein S 37.7 61 0.0021 24.7 5.3 46 24-70 28-79 (102)
421 2v94_A RPS24, 30S ribosomal pr 36.9 61 0.0021 24.9 5.3 46 24-70 37-88 (107)
422 3u5c_Y RP50, 40S ribosomal pro 36.5 83 0.0028 25.2 6.2 46 24-70 33-84 (135)
423 3d45_A Poly(A)-specific ribonu 34.8 47 0.0016 33.0 5.6 48 184-237 447-494 (507)
424 3lpe_A Putative transcription 31.8 1.5E+02 0.005 21.8 6.7 31 41-75 40-70 (92)
425 3bgu_A Ferredoxin-like protein 28.5 1E+02 0.0034 23.7 5.5 49 182-230 28-87 (116)
426 1wvf_A 4-cresol dehydrogenase 23.6 60 0.002 32.2 4.1 45 30-74 217-263 (520)
427 3fry_A Probable copper-exporti 22.9 1.7E+02 0.006 19.4 6.5 56 14-75 6-61 (73)
428 2g1d_A 30S ribosomal protein S 22.4 54 0.0018 24.8 2.6 45 24-69 29-79 (98)
429 2uuu_A Alkyldihydroxyacetoneph 21.9 58 0.002 33.0 3.6 61 16-76 275-339 (584)
430 2qyc_A Ferredoxin-like protein 21.3 2.1E+02 0.0072 21.0 6.0 33 198-230 34-70 (103)
431 2xzm_P RPS24E; ribosome, trans 21.2 1.4E+02 0.0047 24.4 4.9 46 24-70 31-82 (149)
432 4bby_A Alkyldihydroxyacetoneph 21.1 82 0.0028 32.3 4.6 55 22-76 351-409 (658)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.1e-36 Score=289.73 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=170.6
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.+..+.++|||+|||.++|+++|+++|+.||.|.+|+|..+..+ ++|||||+|.+.++|.+|++ +|+..+.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999865 58999999999999999996 99999999999998
Q ss_pred cccccccccccCCCCceEEeeCCCccccHHHHHHHHccCC-CEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHH--
Q 039806 89 PFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFG-KITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAI-- 165 (398)
Q Consensus 89 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~-- 165 (398)
++ ..++|||+|||.++|+++|+++|+.|| .|.++.++++..|.++||+...+.-.....++.....
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 75 468999999999999999999999999 9999999999888899985333322222222111000
Q ss_pred -----------------HHHHHHHhhhhhhccccCCCcc-cCHHHHHHHhhcCCCeEEEEEeeCCC--CCccce-EEEec
Q 039806 166 -----------------LRAQFERMRKERAELYKNINDE-VDEIELKQYFSQCGTISSVKIMRTDR--GISKGH-CMAIA 224 (398)
Q Consensus 166 -----------------~~~~~~~~~~~~~~~v~nL~~~-vtee~L~~~F~~fG~I~svki~~d~~--g~skGf-fV~f~ 224 (398)
...........++++|+|||.+ +|+++|+++|++||.|++|+|++|.. |.++|| ||.|.
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 0000012234567889999999 99999999999999999999999886 999999 99999
Q ss_pred ccHHHHHHHHHHhccc
Q 039806 225 QTKRERTSYLRIMYAK 240 (398)
Q Consensus 225 ~~~ea~~A~l~~q~~q 240 (398)
+.++|.+|+ .++...
T Consensus 263 ~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSL 277 (292)
T ss_dssp SHHHHHHHG-GGTTEE
T ss_pred CHHHHHHHH-HhcCCE
Confidence 999999999 776544
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4e-36 Score=284.65 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=177.7
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..+++|||+|||.++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 4568999999999999999999999999 999998 5588999999999999999999999999999999998743
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCC-CCCccccCCchhhhHHHHHHHHHHHHHHHH-
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDA-NGTSKGFGSKVLYVARAQKKAERKAILRAQ- 169 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~-~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~- 169 (398)
..++|||+|||.++|+++|+++|+.||.|.++.+++|. +|.++||+...+.-.....++... +...
T Consensus 94 ----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~~~~ 161 (284)
T 3smz_A 94 ----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD--LLGKP 161 (284)
T ss_dssp ----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCE
T ss_pred ----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH--hCCCE
Confidence 45799999999999999999999999999999999987 589999864443332222222111 1000
Q ss_pred ----------------HHHhhhhhhccccCCCccc-CHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHH
Q 039806 170 ----------------FERMRKERAELYKNINDEV-DEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERT 231 (398)
Q Consensus 170 ----------------~~~~~~~~~~~v~nL~~~v-tee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~ 231 (398)
.......++++|+|||.++ |+++|+++|++||.|++|+|++|.+|+++|| ||.|.+.++|.+
T Consensus 162 ~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp ETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred eCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 0111234568889999996 9999999999999999999999999999999 999999999999
Q ss_pred HHHHHhccc
Q 039806 232 SYLRIMYAK 240 (398)
Q Consensus 232 A~l~~q~~q 240 (398)
|+..++...
T Consensus 242 A~~~l~g~~ 250 (284)
T 3smz_A 242 AQQQADGLS 250 (284)
T ss_dssp HHHHHTTCE
T ss_pred HHHHhCCCc
Confidence 999887654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.9e-29 Score=229.05 Aligned_cols=131 Identities=24% Similarity=0.375 Sum_probs=99.8
Q ss_pred CccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 6 d~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
+|+......++|||+|||.++|+++|+++|+.||.|.+|+|++|. +|+++|||||+|.+.++|++||+.+|+..+.|+.
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 344444567899999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeC
Q 039806 85 LYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKD 138 (398)
Q Consensus 85 i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d 138 (398)
|.+.++......... ..++|||+||++++|+++|+++|+.||.|++++|++|
T Consensus 87 i~~~~~~~~~~~~~~--~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 87 VRIMWSQRDPSLRKS--GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CEEEECCCCTHHHHH--CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred ccccccccccccccc--ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 999887654332211 2445666666666666666666665555555555544
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.9e-28 Score=218.59 Aligned_cols=152 Identities=20% Similarity=0.382 Sum_probs=121.8
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+||+. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34567899999999999999999999999999999999998 899999999999999999999985 9999999999999
Q ss_pred cccccccccccC--CCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHH
Q 039806 89 PFIRRADRIQEG--SSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAIL 166 (398)
Q Consensus 89 ~~~~~~~~~~~~--~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~ 166 (398)
++..+....... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 104 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTV--------------------------------------------------------------- 104 (196)
T ss_dssp ECCC-----------CC---------------------------------------------------------------
T ss_pred cccCcccccccccCCCc---------------------------------------------------------------
Confidence 886544321110 012
Q ss_pred HHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 167 RAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 167 ~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
++++|+|||.++|+++|+++|++||.|++|+|++|. +|.++|| ||+|.+.++|.+|+..
T Consensus 105 ----------~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 105 ----------KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp ----------SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ----------ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 445666666666666667777777777777777765 7788888 9999999999999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.4e-28 Score=213.82 Aligned_cols=151 Identities=21% Similarity=0.331 Sum_probs=132.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.+++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.+||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999997 89999999999999999999999999999999999999875
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHH
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE 171 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~ 171 (398)
++...
T Consensus 82 ~~~~~--------------------------------------------------------------------------- 86 (168)
T 1b7f_A 82 PGGES--------------------------------------------------------------------------- 86 (168)
T ss_dssp CCSST---------------------------------------------------------------------------
T ss_pred CCccc---------------------------------------------------------------------------
Confidence 43210
Q ss_pred HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 172 ~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++++|||.++++++|+++|++||.|++|+++++. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 87 --~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 87 --IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp --TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred --CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 113457778888888888888888888888888888887 8999999 999999999999999887654
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=7.6e-28 Score=208.62 Aligned_cols=150 Identities=26% Similarity=0.404 Sum_probs=124.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
+++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999 999999999999999999999999999999999999998765
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHHH
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFER 172 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~~ 172 (398)
..... ..++
T Consensus 82 ~~~~~----~~~~------------------------------------------------------------------- 90 (167)
T 1fxl_A 82 SSASI----RDAN------------------------------------------------------------------- 90 (167)
T ss_dssp CCGGG----TTCE-------------------------------------------------------------------
T ss_pred CcccC----CCCc-------------------------------------------------------------------
Confidence 43221 2233
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
++++|||.++++++|+++|++||.|.+|++.+|. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 91 ------l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 91 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp ------EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ------EEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 5555556666666666666666666666666665 7778888 999999999999998887654
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=210.25 Aligned_cols=151 Identities=22% Similarity=0.319 Sum_probs=119.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
++|||+|||.++|+++|+++|+.||.|.+|++..+++++++|||||+|.+.++|.+|++.+||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999886544
Q ss_pred cccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHHHhh
Q 039806 95 DRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMR 174 (398)
Q Consensus 95 ~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~~~~ 174 (398)
... ....++|||+|||.++|+++|+++|++||
T Consensus 81 ~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G---------------------------------------------- 112 (166)
T 3md3_A 81 QSS--SDDTFNLFVGDLNVNVDDETLRNAFKDFP---------------------------------------------- 112 (166)
T ss_dssp CCC--CTTCEEEEEESCCTTCCHHHHHHHHTTST----------------------------------------------
T ss_pred CCC--CCCCceEEECCCCCCCCHHHHHHHHhccC----------------------------------------------
Confidence 321 11344555555555555555555555555
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.|.+|++++|. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 113 ---------------------------~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 113 ---------------------------SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp ---------------------------TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ---------------------------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 55555555543 6677777 999999999999998776543
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.7e-28 Score=211.24 Aligned_cols=129 Identities=24% Similarity=0.374 Sum_probs=107.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CC--CceeEEEEEecCHHHHHHHHHHhcCCeec---ceEe
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EG--KSKGYGFVQYSTPESALDAIEKLQGATVE---RMEL 85 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g--~skg~aFV~F~~~e~A~~Ai~~lng~~l~---gk~i 85 (398)
+++++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +| +++|||||+|.+.++|++|++.||+..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467899999999999999999999999999999999999 44 89999999999999999999999998776 5777
Q ss_pred eeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCc
Q 039806 86 YVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTS 143 (398)
Q Consensus 86 ~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s 143 (398)
.+.++...... ....++|||+|||.++|+++|+++|++||.|.++.+.++.+|.+
T Consensus 81 ~~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~ 135 (175)
T 3nmr_A 81 QMKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 135 (175)
T ss_dssp EEEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred EEccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCE
Confidence 77776544332 12568899999999999988888888887777776666644333
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.9e-28 Score=219.18 Aligned_cols=162 Identities=20% Similarity=0.316 Sum_probs=136.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999998 99999999999999999999999999999999999997654
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHH
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE 171 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~ 171 (398)
.+.... .. ......
T Consensus 107 ~~~~~~--------------------~~----------------------------------------------~~~~~~ 120 (216)
T 2qfj_A 107 NIGQAQ--------------------PI----------------------------------------------IDQLAE 120 (216)
T ss_dssp CCGGGH--------------------HH----------------------------------------------HHHHHH
T ss_pred Cccccc--------------------hh----------------------------------------------hhhhhc
Confidence 322110 00 000111
Q ss_pred HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 172 ~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.....++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 23456789999999999999999999999999999999996 8999999 999999999999999887544
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.6e-27 Score=207.09 Aligned_cols=143 Identities=20% Similarity=0.359 Sum_probs=117.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
++++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999997 89999999999999999999998 4789999999998775
Q ss_pred ccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHH
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFE 171 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~ 171 (398)
++.... ..
T Consensus 80 ~~~~~~----~~-------------------------------------------------------------------- 87 (167)
T 2cjk_A 80 PRDEQD----KT-------------------------------------------------------------------- 87 (167)
T ss_dssp CHHHHH----HC--------------------------------------------------------------------
T ss_pred chhhcc----CC--------------------------------------------------------------------
Confidence 433211 12
Q ss_pred HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHH
Q 039806 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 172 ~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l 234 (398)
++++++|||.++++++|+++|++||.|++|+|++|. +|.++|| ||+|.+.++|.+|+.
T Consensus 88 -----~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 88 -----GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp -----EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred -----CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 245556666666666666666667777777776664 6788888 999999999999975
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=5e-27 Score=211.90 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred CcceEEEcCCC-CCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLA-STIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp-~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
++++|||+||| .++|+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++||+.|||..|.|+.|+|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 56899999999 89999999999999999999999875 47999999999999999999999999999999999886
Q ss_pred c
Q 039806 92 R 92 (398)
Q Consensus 92 ~ 92 (398)
.
T Consensus 79 ~ 79 (205)
T 3tyt_A 79 Q 79 (205)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3.9e-26 Score=199.26 Aligned_cols=145 Identities=11% Similarity=0.240 Sum_probs=122.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKF----G-------DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
+.++|||+|||.++|+++|+++|+.| | .|.++++. .++|||||+|.+.++|++|+ .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 77888774 46899999999999999999 79999999
Q ss_pred ceEeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHH
Q 039806 82 RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161 (398)
Q Consensus 82 gk~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~ 161 (398)
|+.|.|.++....... .
T Consensus 77 g~~i~v~~~~~~~~~~----~----------------------------------------------------------- 93 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLP----G----------------------------------------------------------- 93 (172)
T ss_dssp TEECEEECCSSCCCCT----T-----------------------------------------------------------
T ss_pred CceeeecCCcccCCCC----C-----------------------------------------------------------
Confidence 9999998764322110 1
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 162 RKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++++++|||.++++++|+++|++||.|.+|+|.+|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 94 --------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 94 --------------AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp --------------TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred --------------CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 4567778888888888888888888888888888886 8999999 99999999999999887754
Q ss_pred c
Q 039806 240 K 240 (398)
Q Consensus 240 q 240 (398)
.
T Consensus 160 ~ 160 (172)
T 2g4b_A 160 Q 160 (172)
T ss_dssp E
T ss_pred E
Confidence 3
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=4.8e-26 Score=213.08 Aligned_cols=141 Identities=23% Similarity=0.312 Sum_probs=121.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..+..++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|++.+||..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 346678999999999999999999999999999999954 579999999999999999999999999999999988
Q ss_pred ccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHH
Q 039806 90 FIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQ 169 (398)
Q Consensus 90 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~ 169 (398)
+.. .
T Consensus 93 a~~----------~------------------------------------------------------------------ 96 (261)
T 3sde_A 93 ATH----------G------------------------------------------------------------------ 96 (261)
T ss_dssp CCC----------S------------------------------------------------------------------
T ss_pred ccc----------C------------------------------------------------------------------
Confidence 641 1
Q ss_pred HHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 170 FERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 170 ~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
++++|+||+.++|+++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++.
T Consensus 97 -------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 97 -------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp -------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred -------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 2456666777777777777777777888888888888999999 9999999999999988854
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=6e-25 Score=207.49 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=132.7
Q ss_pred CCcceEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLH----QIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~----~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
..+++|||+|||.++|+++|+ ++|+.||.|.+|+|.+ +|++||||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 457899999999999999966 8999999999999886 7889999999999999999999999999999999999
Q ss_pred ecccccccccccCC-CC--ceEEeeCCCccccHHHHHHHHc---------------------------------------
Q 039806 88 GPFIRRADRIQEGS-SF--NNLYVKNLDDDMTEEILVEKFS--------------------------------------- 125 (398)
Q Consensus 88 ~~~~~~~~~~~~~~-~~--~~lfV~nLp~~~tee~L~~~F~--------------------------------------- 125 (398)
.++..+........ .. +...... .....++.......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREK-RKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhh-hhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99865543211000 00 0000000 00000000000000
Q ss_pred ---------------------------cCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039806 126 ---------------------------EFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERA 178 (398)
Q Consensus 126 ---------------------------~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~~~~~~~~ 178 (398)
.-+.+.......+. ...++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~ 209 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSEN----------------------------------PPNHI 209 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCC----------------------------------CCCCE
Confidence 00000111111121 01367
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
++|+||+.++++++|+++|++||.|++|+|+++. +|| ||+|.+.++|.+|+..++...
T Consensus 210 l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~ 268 (282)
T 3pgw_A 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFK 268 (282)
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcE
Confidence 8999999999999999999999999999999654 567 999999999999998887644
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.9e-26 Score=198.94 Aligned_cols=127 Identities=23% Similarity=0.250 Sum_probs=101.5
Q ss_pred CCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 4 TPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 4 ~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
+-.........++|||+|||.++|+++|+++|+.||.|..+.+....+|.++|||||+|.+.++|++|++ |||..+.|+
T Consensus 3 h~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 81 (175)
T 1fje_B 3 HMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 81 (175)
T ss_dssp CCCSSSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred ccccCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCe
Confidence 3344445667889999999999999999999999998776444333488999999999999999999995 999999999
Q ss_pred EeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEE
Q 039806 84 ELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSL 133 (398)
Q Consensus 84 ~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~ 133 (398)
.|.|.++..+..... ...++|||+|||.++|+++|+++|++||.|..+
T Consensus 82 ~l~v~~~~~~~~~~~--~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 82 EIKLEKPKGRDSKKV--RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp EEEEECCCCSSCSTT--GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred EEEEecCCCcccccc--ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 999999876543321 246778888888888888777777777755544
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=9.6e-25 Score=194.77 Aligned_cols=165 Identities=10% Similarity=0.204 Sum_probs=124.2
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKF----G-------DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
.+++|||+|||.++|+++|+++|+.| | .|.++++ +.++|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 6666666 457899999999999999999 79999999
Q ss_pred ceEeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHH
Q 039806 82 RMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161 (398)
Q Consensus 82 gk~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~ 161 (398)
|+.|.|.++..+.......... .. ..+.. ... ....
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~-~~---~~~~~---------------~~~----~~~~--------------------- 112 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENP-SV---YVPGV---------------VST----VVPD--------------------- 112 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCS-SC---CCTTS---------------SCC----CSSC---------------------
T ss_pred CceEEEeCCCCCCCCCCCcCCC-cC---CCCCC---------------ccC----CCCC---------------------
Confidence 9999999887653322111000 00 00000 000 0000
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 162 RKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++||.|.+|+|.+|. +|.++|| ||+|.+.++|.+|+..++..
T Consensus 113 -------------~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 113 -------------SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp -------------CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC
T ss_pred -------------CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 12467778888888888888888888888888888886 8889999 99999999999999887654
Q ss_pred c
Q 039806 240 K 240 (398)
Q Consensus 240 q 240 (398)
.
T Consensus 180 ~ 180 (198)
T 2yh0_A 180 Q 180 (198)
T ss_dssp E
T ss_pred E
Confidence 3
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=3.9e-25 Score=209.01 Aligned_cols=137 Identities=24% Similarity=0.286 Sum_probs=125.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998 99999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCceEEeeCCCccc-cHHHHHHHHccCCCEEEEEEeeCCCCCccccCCch
Q 039806 92 RRADRIQEGSSFNNLYVKNLDDDM-TEEILVEKFSEFGKITSLVISKDANGTSKGFGSKV 150 (398)
Q Consensus 92 ~~~~~~~~~~~~~~lfV~nLp~~~-tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~ 150 (398)
++...... ...++|||+|||.++ |+++|+++|+.||.|.++.+++|.+|.++||+...
T Consensus 174 ~~~~~~~~-~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~ 232 (284)
T 3smz_A 174 AGQLTPAL-LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLE 232 (284)
T ss_dssp GGGCCTTT-TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEE
T ss_pred CCCCCccc-CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEE
Confidence 76544322 367899999999995 99999999999999999999999999999996433
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=3.5e-24 Score=196.45 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=130.5
Q ss_pred ccccCCCcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 7 SEARLSGIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
|.....++++|||+|||. ++|+++|+++|+.||.|.+|+|..+. +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 444556789999999999 99999999999999999999998875 7899999999999999999999999999999
Q ss_pred eeeccccccccccc----CCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHH
Q 039806 86 YVGPFIRRADRIQE----GSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAE 161 (398)
Q Consensus 86 ~V~~~~~~~~~~~~----~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~ 161 (398)
.|.++..+...... ......-| .+-+.. -+...+... ..+...
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~----~~~~~~-------------------- 149 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDY-GNSPLH--------RFKKPGSKN----FQNIFP-------------------- 149 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEEC-TTCSSC--------CCCSTTSGG----GTTCCC--------------------
T ss_pred EEEEecCccccCcccccccccccccc-ccCccc--------ccCCccccc----cccCCC--------------------
Confidence 99998754321100 00000000 000000 000000000 000010
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCcccCHHHHHHHhhcCC-CeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 162 RKAILRAQFERMRKERAELYKNINDEVDEIELKQYFSQCG-TISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG-~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.++++++|+++|++|| .|++|+|+.+ ++|| ||+|.+.++|.+|+..++..
T Consensus 150 -------------~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 150 -------------PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp -------------SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTC
T ss_pred -------------CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCC
Confidence 015678889999999999999999999 8999998653 3567 99999999999999988765
Q ss_pred cc
Q 039806 240 KQ 241 (398)
Q Consensus 240 q~ 241 (398)
..
T Consensus 213 ~~ 214 (229)
T 2adc_A 213 DL 214 (229)
T ss_dssp BS
T ss_pred cc
Confidence 43
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=4.8e-25 Score=180.48 Aligned_cols=106 Identities=44% Similarity=0.707 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
++++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +.+||||||+|.+.++|++||+.|||..|+|+.|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 56799999999999999999999999999999999997 44899999999999999999999999999999999999987
Q ss_pred cccccccC----CCCceEEeeCCCccccHHH
Q 039806 93 RADRIQEG----SSFNNLYVKNLDDDMTEEI 119 (398)
Q Consensus 93 ~~~~~~~~----~~~~~lfV~nLp~~~tee~ 119 (398)
+..+.... ...++|||+||++++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 76654332 2667899999999999874
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=7.9e-24 Score=189.27 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=121.2
Q ss_pred CcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
++++|||+|||. ++|+++|+++|+.||.|.+|++..+. +|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357999999999 99999999999999999999998864 7899999999999999999999999999999999887
Q ss_pred ccccccccCC----CCceEEeeCCCccccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHH
Q 039806 92 RRADRIQEGS----SFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILR 167 (398)
Q Consensus 92 ~~~~~~~~~~----~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~ 167 (398)
.+........ ....-|- +-+. .-|...+......+. ....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~--------~r~~~~~~~~~~~~~--~~~~------------------------- 121 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYG-NSPL--------HRFKKPGSKNFQNIF--PPSA------------------------- 121 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESS-CCCT--------TSSSSCCCCCCSCCC--CCCC-------------------------
T ss_pred CCCcCCCCcCCcccccccccc-CCch--------hhccCccccccccCC--CCcc-------------------------
Confidence 5432111000 0000000 0000 000000000000000 0000
Q ss_pred HHHHHhhhhhhccccCCCcccCHHHHHHHhhcCC-CeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 168 AQFERMRKERAELYKNINDEVDEIELKQYFSQCG-TISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 168 ~~~~~~~~~~~~~v~nL~~~vtee~L~~~F~~fG-~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
+++|+||+.++++++|+++|++|| .|.+|+|+.+. +|| ||+|.+.++|.+|+..++....
T Consensus 122 ----------~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 122 ----------TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp ----------EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred ----------EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 355677777777777888888888 78888776542 566 9999999999999988876543
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=1.2e-23 Score=199.55 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=117.6
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.+..++|||+|||.++|+++|+++|+.|| .|.+|++..+..|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999 99999999999899999999999999999999999999999999999999
Q ss_pred cccccccccc---CCCCceEEeeCCCcc-ccHHHHHHHHccCCCEEEEEEeeCCC--CCccccCCchh
Q 039806 90 FIRRADRIQE---GSSFNNLYVKNLDDD-MTEEILVEKFSEFGKITSLVISKDAN--GTSKGFGSKVL 151 (398)
Q Consensus 90 ~~~~~~~~~~---~~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~~~i~~d~~--g~s~Gf~~~~l 151 (398)
+.++...... ....++|||+|||.+ +|+++|+++|+.||.|.++.+.+|.+ |.++||+...+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F 261 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 261 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEE
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEe
Confidence 8766544322 236789999999999 99999999999999999999999987 99999964333
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=153.85 Aligned_cols=81 Identities=30% Similarity=0.457 Sum_probs=77.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|++|+ +|.++|||||+|.+.++|++||+.|||..|+|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cc
Q 039806 91 IR 92 (398)
Q Consensus 91 ~~ 92 (398)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=152.33 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=79.2
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+||+.++|+++|+++|++||.|.+|+|+.|. +|+++|||||+|++.++|++||+.|||..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999999999 79999999999999999999999999999999999999987
Q ss_pred ccccc
Q 039806 92 RRADR 96 (398)
Q Consensus 92 ~~~~~ 96 (398)
....+
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 65544
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-21 Score=149.92 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=76.4
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHh-cCCeecceEeeeecc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKL-QGATVERMELYVGPF 90 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~V~~~ 90 (398)
+.+|||+|||.++|+++|+++|+.|| .|.+|+|++|+ +|.+||||||+|.+.++|++||+.+ |+..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 8999999999999999999999977 456899999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=145.74 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=84.3
Q ss_pred CccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 6 d~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
++..+....++|||+|||.++|+++|+++|+.||.|.+|+|..++ ++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 445556778999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred eeeecccccccc
Q 039806 85 LYVGPFIRRADR 96 (398)
Q Consensus 85 i~V~~~~~~~~~ 96 (398)
|.|.++.++..+
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876554
No 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=5.4e-20 Score=150.10 Aligned_cols=103 Identities=23% Similarity=0.310 Sum_probs=93.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
.+++|||+|||.++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4679999999999999999999999999999999875 55689999999999999999999999999999999999876
Q ss_pred cccccccCCCCceEEeeCCCccccHHHHHHHHccCCC
Q 039806 93 RADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGK 129 (398)
Q Consensus 93 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~ 129 (398)
+... ++++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 5533 567888999999999999984
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=139.68 Aligned_cols=82 Identities=29% Similarity=0.454 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred ccc
Q 039806 91 IRR 93 (398)
Q Consensus 91 ~~~ 93 (398)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=145.74 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCC--eeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCC----eecceE
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGD--IQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGA----TVERME 84 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~--I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~----~l~gk~ 84 (398)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|++||+.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 6799999998 8999999999999999999999999997 589999
Q ss_pred eeeecccc
Q 039806 85 LYVGPFIR 92 (398)
Q Consensus 85 i~V~~~~~ 92 (398)
|.|+++.+
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999763
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.9e-19 Score=137.88 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=76.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
+.+|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..++|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 899999999999999999999999999999999999999876
Q ss_pred cc
Q 039806 93 RA 94 (398)
Q Consensus 93 ~~ 94 (398)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=145.94 Aligned_cols=89 Identities=33% Similarity=0.527 Sum_probs=82.0
Q ss_pred CccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 6 d~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
.......+.++|||+|||.++|+++|+++|+.||.|.+|+|..+. +|.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334445677899999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred eeeecccccc
Q 039806 85 LYVGPFIRRA 94 (398)
Q Consensus 85 i~V~~~~~~~ 94 (398)
|.|.++.++.
T Consensus 98 l~V~~a~~k~ 107 (108)
T 2jrs_A 98 MKVGHVTERT 107 (108)
T ss_dssp CEEECSCSSC
T ss_pred EEEEEcccCC
Confidence 9999987664
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=2.4e-19 Score=143.76 Aligned_cols=90 Identities=27% Similarity=0.323 Sum_probs=83.0
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc---eE
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER---ME 84 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g---k~ 84 (398)
..+....++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++||+.|||..+.| +.
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 334556899999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred eeeeccccccccc
Q 039806 85 LYVGPFIRRADRI 97 (398)
Q Consensus 85 i~V~~~~~~~~~~ 97 (398)
|.|.++..+.++.
T Consensus 89 l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 89 LVVKFADTDKESG 101 (105)
T ss_dssp CEEEESCSSCCCS
T ss_pred EEEEECccCcccC
Confidence 9999998776553
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=144.67 Aligned_cols=85 Identities=25% Similarity=0.361 Sum_probs=79.7
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+....++|||+|||.++|+++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|++|++.|||..|+|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987654
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=143.88 Aligned_cols=90 Identities=39% Similarity=0.638 Sum_probs=83.3
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
........++|||+|||.++|+++|+++|+.||.|.+|+|..+ +|.++|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3444567889999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred eeccccccccc
Q 039806 87 VGPFIRRADRI 97 (398)
Q Consensus 87 V~~~~~~~~~~ 97 (398)
|.++.++..+.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99998876654
No 34
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=142.22 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=82.1
Q ss_pred CCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEEEcC-CCCceeEEEEEecCHHHHHHHH
Q 039806 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQS--------SKVVVSQ-EGKSKGYGFVQYSTPESALDAI 72 (398)
Q Consensus 2 ~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~--------vki~~d~-~g~skg~aFV~F~~~e~A~~Ai 72 (398)
|++..+.......++|||+|||.++|+++|+++|+.||.|.+ |+|..|+ +|+++|||||+|.+.++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 1 MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp CCSSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHH
Confidence 455555666677899999999999999999999999999999 9999997 8999999999999999999999
Q ss_pred HHhcCCeecceEeeeecc
Q 039806 73 EKLQGATVERMELYVGPF 90 (398)
Q Consensus 73 ~~lng~~l~gk~i~V~~~ 90 (398)
+.|||..|.|+.|.|.++
T Consensus 81 ~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 81 DWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHTTCBSSSSBCEEEEC
T ss_pred HHhCCCEeCCcEEEEEec
Confidence 999999999999999876
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.7e-19 Score=145.99 Aligned_cols=88 Identities=30% Similarity=0.427 Sum_probs=81.8
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.||+..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 039806 89 PFIRRADRI 97 (398)
Q Consensus 89 ~~~~~~~~~ 97 (398)
++.++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998776543
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=141.57 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|+++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 039806 92 RRAD 95 (398)
Q Consensus 92 ~~~~ 95 (398)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6653
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=5.6e-20 Score=143.37 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFG--DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G--~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
.+|||+|||.++|+++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 99999999999999999999999999999999999999987
Q ss_pred cccc
Q 039806 92 RRAD 95 (398)
Q Consensus 92 ~~~~ 95 (398)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=139.84 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=78.5
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345567899999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred eeccc
Q 039806 87 VGPFI 91 (398)
Q Consensus 87 V~~~~ 91 (398)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=142.97 Aligned_cols=86 Identities=29% Similarity=0.478 Sum_probs=81.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9877655
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.7e-19 Score=144.48 Aligned_cols=87 Identities=29% Similarity=0.428 Sum_probs=81.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++.++..+
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99877654
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=144.31 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=82.0
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.....+.++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445667899999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++..+..+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999865544
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=140.95 Aligned_cols=85 Identities=34% Similarity=0.550 Sum_probs=80.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+..++|||+|||.++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
..+..+
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877655
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=139.39 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=143.44 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=82.5
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445667899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++.++..+
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876554
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.4e-19 Score=144.16 Aligned_cols=86 Identities=26% Similarity=0.381 Sum_probs=80.5
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+....++|||+|||.++|+++|+++|+.||.|.+|+|..+. +|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 89 PFIRRAD 95 (398)
Q Consensus 89 ~~~~~~~ 95 (398)
++.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9887654
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=143.25 Aligned_cols=91 Identities=23% Similarity=0.333 Sum_probs=83.1
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
++......++|||+|||.++|+++|+++|+.||.|.+|+|+.|. ++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34445677899999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred eeeccccccccc
Q 039806 86 YVGPFIRRADRI 97 (398)
Q Consensus 86 ~V~~~~~~~~~~ 97 (398)
.|.++.++..+.
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998766543
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=142.04 Aligned_cols=85 Identities=29% Similarity=0.499 Sum_probs=80.4
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSS-KVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~v-ki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
++.++|||+|||.++|+++|+++|+.||.|.+| +|+.|+ +|.++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999999 999996 999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876654
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=141.20 Aligned_cols=85 Identities=18% Similarity=0.338 Sum_probs=79.6
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|+.|. ++.++|||||+|.+.++|++||+ +|+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876654
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.6e-19 Score=136.91 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++..|. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999996 9999999999999999999999999999999999999876
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=143.31 Aligned_cols=90 Identities=23% Similarity=0.412 Sum_probs=82.8
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhc------CCee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQ------GATV 80 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~ln------g~~l 80 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|++||+.+| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3345567899999999999999999999999999999999998 89999999999999999999999999 9999
Q ss_pred cceEeeeeccccccccc
Q 039806 81 ERMELYVGPFIRRADRI 97 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~~~ 97 (398)
+|+.|.|.++.++..+.
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998776553
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4e-19 Score=140.13 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=78.4
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
+++|||+|||.++|+++|+++|+.||.|.+|+|..+. +|.++|||||+|.+.++|++|++.|||..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999998 899999999999999999999999999999999999999887
Q ss_pred cccc
Q 039806 93 RADR 96 (398)
Q Consensus 93 ~~~~ 96 (398)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 52
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=143.92 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=83.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRA 94 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~ 94 (398)
++|||+|||.++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++|++.|||..++|+.|.|.++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999887 78999999999999999999999999999999999998766
Q ss_pred cccccCC------CCceEEeeCCC
Q 039806 95 DRIQEGS------SFNNLYVKNLD 112 (398)
Q Consensus 95 ~~~~~~~------~~~~lfV~nLp 112 (398)
.+..... ...+|||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 4422211 36789999986
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.1e-20 Score=145.46 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=78.3
Q ss_pred CcceEEEcCCCC------CCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc-eE
Q 039806 13 GIGNAFVKNLAS------TIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER-ME 84 (398)
Q Consensus 13 ~~~~lfV~nLp~------~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g-k~ 84 (398)
.+++|||+|||. ++++++|+++|+.||.|.+|+|+.|+ +|++||||||+|.+.++|++||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred eeeeccccccc
Q 039806 85 LYVGPFIRRAD 95 (398)
Q Consensus 85 i~V~~~~~~~~ 95 (398)
|.|.++.++..
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999876543
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=139.31 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=77.1
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
......++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 344567899999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred ecc
Q 039806 88 GPF 90 (398)
Q Consensus 88 ~~~ 90 (398)
.++
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=142.29 Aligned_cols=87 Identities=30% Similarity=0.504 Sum_probs=81.3
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++||+.||+..|+|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=139.18 Aligned_cols=88 Identities=30% Similarity=0.453 Sum_probs=80.5
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|+|..+..+ ++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334566789999999999999999999999999999999998754 8999999999999999999999999999999999
Q ss_pred ecccccccc
Q 039806 88 GPFIRRADR 96 (398)
Q Consensus 88 ~~~~~~~~~ 96 (398)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876654
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=141.91 Aligned_cols=86 Identities=24% Similarity=0.298 Sum_probs=79.9
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|+++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 754433
No 58
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=3.9e-19 Score=142.73 Aligned_cols=91 Identities=24% Similarity=0.344 Sum_probs=82.7
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCee---cc
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATV---ER 82 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l---~g 82 (398)
+.......++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +|+++|||||+|.+.++|++||+.||+..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 33445677899999999999999999999999999999999998 899999999999999999999999999987 89
Q ss_pred eEeeeeccccccccc
Q 039806 83 MELYVGPFIRRADRI 97 (398)
Q Consensus 83 k~i~V~~~~~~~~~~ 97 (398)
+.|.|.++..+..+.
T Consensus 86 ~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 86 RPIQVKPADSESRGG 100 (106)
T ss_dssp SCCEEEECCCCSCCC
T ss_pred ceEEEEECCcccccC
Confidence 999999998766543
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=140.38 Aligned_cols=86 Identities=21% Similarity=0.432 Sum_probs=80.5
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|..++ ++.++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34567899999999999999999999999999999999997 899999999999999999999998 9999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99877654
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=8.9e-19 Score=135.42 Aligned_cols=82 Identities=18% Similarity=0.394 Sum_probs=74.8
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
+......++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++|++ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3445677899999999999999999999999999999999998 89999999999999999999996 588999999999
Q ss_pred eecc
Q 039806 87 VGPF 90 (398)
Q Consensus 87 V~~~ 90 (398)
|.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=141.46 Aligned_cols=87 Identities=18% Similarity=0.370 Sum_probs=81.2
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEc-C-CCCceeEEEEEecCHHHHHHHHHHh-cCCeecceEee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVS-Q-EGKSKGYGFVQYSTPESALDAIEKL-QGATVERMELY 86 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d-~-~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~ 86 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+ . ++.++|||||+|.+.++|++||+.| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556789999999999999999999999999999999999 4 9999999999999999999999999 99999999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876654
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=139.00 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=79.7
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..|..+ ++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4556789999999999999999999999999999999998743 789999999999999999999999999999999999
Q ss_pred cccccccc
Q 039806 90 FIRRADRI 97 (398)
Q Consensus 90 ~~~~~~~~ 97 (398)
+..+..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98766553
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.6e-19 Score=147.76 Aligned_cols=85 Identities=24% Similarity=0.334 Sum_probs=79.8
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +|+++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987654
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=139.79 Aligned_cols=85 Identities=16% Similarity=0.319 Sum_probs=79.2
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCee-EEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceE--
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQ-SSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERME-- 84 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~-~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~-- 84 (398)
......++|||+|||.++|+++|+++|+.||.|. +|+|+.|+ +|.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3445678999999999999999999999999999 99999998 9999999999999999999999999999999999
Q ss_pred --eeeeccccc
Q 039806 85 --LYVGPFIRR 93 (398)
Q Consensus 85 --i~V~~~~~~ 93 (398)
|+|.++...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999888654
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=147.91 Aligned_cols=88 Identities=31% Similarity=0.516 Sum_probs=81.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 039806 89 PFIRRADRI 97 (398)
Q Consensus 89 ~~~~~~~~~ 97 (398)
++..+..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998776553
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=140.44 Aligned_cols=86 Identities=30% Similarity=0.468 Sum_probs=80.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCe-ecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSK-FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT-VERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~-~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~-l~gk~i~V~~ 89 (398)
...++|||+|||.++|+++|+++|+. ||.|.+|+|+.|.+|.++|||||+|.+.++|++||+.||+.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45679999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccccc
Q 039806 90 FIRRADRI 97 (398)
Q Consensus 90 ~~~~~~~~ 97 (398)
+.++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98766553
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=138.99 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=79.0
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.|| |.+|+|+.|. +|+++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 9999999998 8999999999999999999999 799999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876554
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=138.20 Aligned_cols=85 Identities=38% Similarity=0.566 Sum_probs=78.7
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCC--C--CceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQE--G--KSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~--g--~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|..+.+ | .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999873 4 89999999999999999999999999999999999
Q ss_pred ecccccccc
Q 039806 88 GPFIRRADR 96 (398)
Q Consensus 88 ~~~~~~~~~ 96 (398)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876654
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=144.05 Aligned_cols=85 Identities=20% Similarity=0.413 Sum_probs=80.1
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 039806 92 RRADR 96 (398)
Q Consensus 92 ~~~~~ 96 (398)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76544
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.2e-18 Score=136.16 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
.++.++|||+|||.++|+++|+++|+.||.|.+|+|..+ +|.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999985 7899999999999999999999999999999999999998
Q ss_pred ccccc
Q 039806 91 IRRAD 95 (398)
Q Consensus 91 ~~~~~ 95 (398)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76554
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.5e-18 Score=139.57 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|+++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=136.54 Aligned_cols=82 Identities=21% Similarity=0.447 Sum_probs=76.2
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCC-ceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGK-SKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~-skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++..+. ++. ++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 45799999999999999999999999999999999988 444 8999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 91 IRRA 94 (398)
Q Consensus 91 ~~~~ 94 (398)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=140.43 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=80.1
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-C-CCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-E-GKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~-g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
.......++|||+|||.++|+++|+++|+.|| |.+|+|+.+. + |+++|||||+|.+.++|++|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455678999999999999999999999999 9999999998 5 999999999999999999999 899999999999
Q ss_pred eeecccccccc
Q 039806 86 YVGPFIRRADR 96 (398)
Q Consensus 86 ~V~~~~~~~~~ 96 (398)
.|.++..+..+
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877654
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-19 Score=141.77 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..++|||+|||.++|+++|.++|+.||.|.+|+|+.|.+|.++|||||+|.+.++|.+||+ +|+..|+|+.|.|.+...
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999999999999999999999999999 899999999999988765
Q ss_pred cc
Q 039806 93 RA 94 (398)
Q Consensus 93 ~~ 94 (398)
..
T Consensus 89 ~~ 90 (103)
T 1s79_A 89 YF 90 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=150.90 Aligned_cols=83 Identities=23% Similarity=0.321 Sum_probs=77.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFG--DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G--~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+.++|||+|||.++|+++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 90 FIRRAD 95 (398)
Q Consensus 90 ~~~~~~ 95 (398)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876543
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-19 Score=139.54 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC--CeecceEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG--ATVERMELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~l~gk~i~V~ 88 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|+++ ||||||+|++.++|++||+.+++ ..|.|+.|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999999999999999999999999999874 69999999999999999998864 78999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876544
No 77
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=142.33 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=80.2
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|++||+.+|+ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3345567899999999999999999999999999999999998 899999999999999999999999998 89999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++..+...
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9998765433
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=8.8e-19 Score=143.52 Aligned_cols=81 Identities=30% Similarity=0.422 Sum_probs=76.6
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..|+ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999998
Q ss_pred cc
Q 039806 89 PF 90 (398)
Q Consensus 89 ~~ 90 (398)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8e-19 Score=141.93 Aligned_cols=86 Identities=29% Similarity=0.450 Sum_probs=78.5
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
+.......++|||+|||.++|+++|+++|+.||.|.+|++..|.. .++|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344456788999999999999999999999999999999999864 4899999999999999999999999999999999
Q ss_pred eeccccc
Q 039806 87 VGPFIRR 93 (398)
Q Consensus 87 V~~~~~~ 93 (398)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998754
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=142.02 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=79.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35799999999999999999999999999999999997 89999999999999999999999999999999999999988
Q ss_pred ccccc
Q 039806 92 RRADR 96 (398)
Q Consensus 92 ~~~~~ 96 (398)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76554
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.5e-18 Score=134.58 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=75.8
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+.++|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|++|+ .+||..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999999999999999998 9999999999999999999999 899999999999999886
Q ss_pred cc
Q 039806 92 RR 93 (398)
Q Consensus 92 ~~ 93 (398)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=137.41 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=77.5
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLH----QIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~----~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
...++.++|||+|||.++|+++|+ ++|+.||.|.+|+|..|..+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 334567899999999999999999 99999999999999998855 899999999999999999999999999999
Q ss_pred eeeeccccccc
Q 039806 85 LYVGPFIRRAD 95 (398)
Q Consensus 85 i~V~~~~~~~~ 95 (398)
|+|.++.++..
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999876543
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=141.47 Aligned_cols=87 Identities=22% Similarity=0.328 Sum_probs=81.2
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQ--------SSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~--------~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
.....++|||+|||.++|+++|+++|+.||.|. .|+|..|. +|+++|||||+|.+.++|++||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999999 69999996 899999999999999999999999999999
Q ss_pred cceEeeeecccccccc
Q 039806 81 ERMELYVGPFIRRADR 96 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~~ 96 (398)
.|+.|.|.++.++..+
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999877654
No 84
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1e-18 Score=133.52 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
++..|||+||+..+|+++|+++|++||+|.+|++.. +||||||+|.++++|++|++.||+..+.|++|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999965 7899999999999999999999999999999999886
No 85
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-19 Score=136.39 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
++.++|||+|||.++|+++|+++|+.||.|.+|+|..++ +|.++|||||+|.+.++|++|++.|||..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998765
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=8.6e-19 Score=141.75 Aligned_cols=86 Identities=16% Similarity=0.279 Sum_probs=75.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|++||+.+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 44567899999999999999999999999999999999998 8999999999999999999999975 699999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 98876543
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=136.97 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=72.4
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCe--ecceE
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGAT--VERME 84 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~--l~gk~ 84 (398)
+......+++|||+|||.++|+++|+++|+.||.|.+|++++ +||||||+|++.++|.+|++.||+.. |.|++
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 334445678999999999999999999999999999999975 57999999999999999999999874 78999
Q ss_pred eeeecccccc
Q 039806 85 LYVGPFIRRA 94 (398)
Q Consensus 85 i~V~~~~~~~ 94 (398)
|+|.++.++.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999987643
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=134.13 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|++||+ +|+..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456899999999999999999999999 9999999999999999999999999999999999 9999999999999998
Q ss_pred cccc
Q 039806 91 IRRA 94 (398)
Q Consensus 91 ~~~~ 94 (398)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=137.79 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=77.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999999999888887 999999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7643
No 90
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-19 Score=143.25 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=78.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +|.++|||||+|.+.++|++|| .||+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35799999999999999999999999999999999998 7999999999999999999999 899999999999999988
Q ss_pred cccccc
Q 039806 92 RRADRI 97 (398)
Q Consensus 92 ~~~~~~ 97 (398)
.+..+.
T Consensus 103 ~~~~~~ 108 (114)
T 2cq4_A 103 AEKNRL 108 (114)
T ss_dssp HHHHHH
T ss_pred CCccCC
Confidence 766553
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=8.6e-19 Score=137.77 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 4456899999999999999999999999999999999987 899999999999999999999999999999999999998
Q ss_pred cc
Q 039806 90 FI 91 (398)
Q Consensus 90 ~~ 91 (398)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=142.27 Aligned_cols=84 Identities=18% Similarity=0.366 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 91 IRRA 94 (398)
Q Consensus 91 ~~~~ 94 (398)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7644
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-19 Score=141.12 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=74.4
Q ss_pred CccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC--CCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 6 NSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 6 d~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
.+.......++|||+|||.++|+++|+++|+.|| |.+|+|..+. +|+++|||||+|.+.++|.+|| .|||..|+|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3344556788999999999999999999999999 9999999996 8999999999999999999999 8999999999
Q ss_pred Eeeeecccccc
Q 039806 84 ELYVGPFIRRA 94 (398)
Q Consensus 84 ~i~V~~~~~~~ 94 (398)
.|.|.++.++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999987653
No 94
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=142.84 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGD---IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
....++|||+|||.++|+++|+++|+.||. |.+|+|+.|.+|+++|||||+|.+.++|++||+ +|+..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999999 899999999999999999999999999999999 9999999999999
Q ss_pred ecccccc
Q 039806 88 GPFIRRA 94 (398)
Q Consensus 88 ~~~~~~~ 94 (398)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886544
No 95
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-19 Score=146.98 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeE--EEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCC----eecce
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQS--SKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGA----TVERM 83 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~--vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~----~l~gk 83 (398)
....++|||+|||.++|+++|+++|+.||.|.+ |+|++|+ +|++||||||+|.+. +|.+||+.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 9999999 999999999999999 999999999999 99999
Q ss_pred Eeeeecccccccc
Q 039806 84 ELYVGPFIRRADR 96 (398)
Q Consensus 84 ~i~V~~~~~~~~~ 96 (398)
.|.|.++.++..+
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876544
No 96
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.2e-18 Score=146.57 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=80.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
..+..+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 865543
No 97
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=134.30 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456899999999999999999999999999999999998 89999999999999999999998 57899999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++.+.
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876654
No 98
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=135.98 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=77.0
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|.. ++.++|||||+|++.++|++||+.||+..|+|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345678999999999999999999999999999999955 456899999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+..+..+
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876544
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=8.1e-19 Score=131.75 Aligned_cols=74 Identities=15% Similarity=0.363 Sum_probs=71.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+|||+|||.++|+++|+++|+.||.|.+|++..++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 89999999999999999999998 9999999999999874
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=2.4e-18 Score=142.58 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=80.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99866544
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=137.89 Aligned_cols=85 Identities=28% Similarity=0.444 Sum_probs=76.7
Q ss_pred cccCCCcceEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 8 EARLSGIGNAFVKNLASTI------DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~v------te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
.......++|||+|||.++ |+++|+++|+.||.|.+|+|. ..+|+++|||||+|.+.++|.+||+.|||..|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3344457899999999999 789999999999999999998 458999999999999999999999999999999
Q ss_pred ce-Eeeeeccccc
Q 039806 82 RM-ELYVGPFIRR 93 (398)
Q Consensus 82 gk-~i~V~~~~~~ 93 (398)
|+ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998643
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=139.36 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=79.8
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHH---HHHhccCCeeEEEEEEcC-CC---CceeEEEEEecCHHHHHHHHHHhcCCe
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLH---QIFSKFGDIQSSKVVVSQ-EG---KSKGYGFVQYSTPESALDAIEKLQGAT 79 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~---~~F~~~G~I~~vki~~d~-~g---~skg~aFV~F~~~e~A~~Ai~~lng~~ 79 (398)
+..|....++|||+|||.++|+++|+ ++|+.||.|.+|+|..+. ++ .++|||||+|++.++|++||+.|||..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34566678899999999999999999 999999999999999887 43 566999999999999999999999999
Q ss_pred ecceEeeeecccccc
Q 039806 80 VERMELYVGPFIRRA 94 (398)
Q Consensus 80 l~gk~i~V~~~~~~~ 94 (398)
|+|+.|.|.++.++.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999998765
No 103
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=137.89 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=76.0
Q ss_pred ccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 9 ARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
......++|||+|||.++|+++|+++|+.||. .+|+|+.|++|++||||||+|++.++|++||+ +|+..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456789999999999999999999999995 59999999999999999999999999999995 79999999999998
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 876543
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=4.1e-18 Score=146.79 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=80.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 446899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++..+
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876544
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=139.51 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..+..+|||+|||.++|+++|+++|+.| .|.+|+|+.|++|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 899999999999999999999999999999999 59999999999999887
Q ss_pred ccc
Q 039806 91 IRR 93 (398)
Q Consensus 91 ~~~ 93 (398)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 644
No 106
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=137.08 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=77.2
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQS-SKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~-vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+ |+|+.|.+|+++|||||+|++.++|++||+. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999998 8899988999999999999999999999997 9999999999998
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 876543
No 107
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=134.62 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=81.0
Q ss_pred CCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 5 PNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 5 rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
.++..+....++|||+|||.++|+++|+++|+.| .+|+++.+. ++.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4555667788999999999999999999999977 378888887 999999999999999999999999999999999
Q ss_pred Eeeeeccccccccc
Q 039806 84 ELYVGPFIRRADRI 97 (398)
Q Consensus 84 ~i~V~~~~~~~~~~ 97 (398)
.|.|.++.++.++.
T Consensus 83 ~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 83 KVTLDWAKPKGEGG 96 (102)
T ss_dssp ECEEEECCCCCSSS
T ss_pred EEEEEEecCCCCCC
Confidence 99999998876653
No 108
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=141.54 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=79.4
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDI-QSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I-~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 899999999999999999999999999999996 9999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+..+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2cpy_A 90 VVTLEDMR 97 (114)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 98866543
No 109
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-19 Score=141.06 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=79.9
Q ss_pred CCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 2 ~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
|............++|||+|||.++|+++|+++|+.||.|.+ +++.+. +|+++|||||+|.+.++|++||+ |||..|
T Consensus 5 ~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 5 LEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp CCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 333333334456789999999999999999999999999988 666665 89999999999999999999998 999999
Q ss_pred cceEeeeecccccccc
Q 039806 81 ERMELYVGPFIRRADR 96 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~~ 96 (398)
.|+.|.|.++.++..+
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 83 FGNEIKLEKPKGRDGT 98 (101)
T ss_dssp TTBCCEEECCSCCCCS
T ss_pred CCcEEEEEEcCCCCCC
Confidence 9999999999876554
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=136.64 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee--------cc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV--------ER 82 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l--------~g 82 (398)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++||+.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred eEeeeecccc
Q 039806 83 MELYVGPFIR 92 (398)
Q Consensus 83 k~i~V~~~~~ 92 (398)
+.|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7788877764
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2e-18 Score=145.00 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGD---IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
....++|||+|||.++|+++|+++|+.||. |.+|+|+.|++|+++|||||+|++.++|++||+ +|+..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345689999999999999999999999999 899999999999999999999999999999999 9999999999999
Q ss_pred ecccccc
Q 039806 88 GPFIRRA 94 (398)
Q Consensus 88 ~~~~~~~ 94 (398)
.++..+.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9876543
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=140.51 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=78.8
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|++||+. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45899999999999999999999999999999999997 899999999999999999999997 9999999999999998
Q ss_pred cccccc
Q 039806 92 RRADRI 97 (398)
Q Consensus 92 ~~~~~~ 97 (398)
++..+.
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 876553
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.3e-18 Score=146.22 Aligned_cols=89 Identities=22% Similarity=0.373 Sum_probs=81.6
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.....+.++|||+|||.++|+++|+++|+.||.|.+|+|..+. +++++|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344557899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++..+..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9998866544
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=138.22 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=74.4
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc--CCeecceEeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ--GATVERMELYV 87 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~l~gk~i~V 87 (398)
....+++|||+|||.++|+++|+++|+.||.|.+|+|+.+ ||||||+|++.++|.+|++.+| +..|.|+.|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3456789999999999999999999999999999999874 7999999999999999999887 46899999999
Q ss_pred eccccccccc
Q 039806 88 GPFIRRADRI 97 (398)
Q Consensus 88 ~~~~~~~~~~ 97 (398)
.++..+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998765543
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=131.76 Aligned_cols=74 Identities=31% Similarity=0.538 Sum_probs=68.8
Q ss_pred cceEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce-Eee
Q 039806 14 IGNAFVKNLASTI------DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM-ELY 86 (398)
Q Consensus 14 ~~~lfV~nLp~~v------te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk-~i~ 86 (398)
+++|||+|||.++ |+++|+++|+.||.|.+|++. +.+|+++|||||+|.+.++|++|++.|||..|+|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 789999999999999999988 45899999999999999999999999999999999 888
Q ss_pred ee
Q 039806 87 VG 88 (398)
Q Consensus 87 V~ 88 (398)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=130.84 Aligned_cols=75 Identities=16% Similarity=0.342 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
++|||+|||.++|+++|+++|+.||.|.+|++..++ +|+++|||||+|.+.++|++|++.+| ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998 89999999999999999999999988 9999999999875
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=137.65 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=78.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEE-EcC-CCCceeEEEEEecCHHHHHHHHHHhc--CCeecceEee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVV-VSQ-EGKSKGYGFVQYSTPESALDAIEKLQ--GATVERMELY 86 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~-~d~-~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~l~gk~i~ 86 (398)
...++|||+|||.++|+++|+++|+.||. |.+|+++ .+. +|.++|||||+|.+.++|.+|++.|| +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 666 78999999999999999999999996 5899999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876654
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=8.9e-19 Score=136.34 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.+ |.+|++.|||..++|+.|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999999999999999999998765
Q ss_pred cc
Q 039806 94 AD 95 (398)
Q Consensus 94 ~~ 95 (398)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=141.75 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=75.8
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999998
Q ss_pred cc
Q 039806 89 PF 90 (398)
Q Consensus 89 ~~ 90 (398)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 74
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=132.74 Aligned_cols=81 Identities=11% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc--CCeecceEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ--GATVERMELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~l~gk~i~V~ 88 (398)
...+++|||+|||.++|+++|+++|+.||.|.+|+++++ ||||||+|++.++|.+|++.++ +..|.|+.|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 346789999999999999999999999999999998764 7999999999999999999774 678999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99866544
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=3.4e-18 Score=154.71 Aligned_cols=110 Identities=42% Similarity=0.687 Sum_probs=85.4
Q ss_pred CCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 2 ~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
|+...........++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +.++|||||+|.+.++|++||+.|||..|+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3444444455567899999999999999999999999999999999986 448999999999999999999999999999
Q ss_pred ceEeeeecccccccccccCC-CCceEEeeCCC
Q 039806 82 RMELYVGPFIRRADRIQEGS-SFNNLYVKNLD 112 (398)
Q Consensus 82 gk~i~V~~~~~~~~~~~~~~-~~~~lfV~nLp 112 (398)
|+.|.|.++.++.++..... .....+..++|
T Consensus 170 g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 170 DRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp TEECEEEECCCHHHHHHHHC------------
T ss_pred CEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 99999999988776543322 33444444444
No 122
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=134.20 Aligned_cols=91 Identities=23% Similarity=0.369 Sum_probs=77.9
Q ss_pred CCCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 1 MWSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 1 m~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
||-...........++|||+|||.++|+++|+++|+.||.|..| +.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34444444445567899999999999999999999999988766 44789999999999999999999999999999
Q ss_pred cceEeeeeccccccc
Q 039806 81 ERMELYVGPFIRRAD 95 (398)
Q Consensus 81 ~gk~i~V~~~~~~~~ 95 (398)
+|+.|.|.++..+..
T Consensus 79 ~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 79 DGRSVSLYYTGEKGG 93 (96)
T ss_dssp TTEEEEEEECSSSCC
T ss_pred CCeEEEEEEcCCCCC
Confidence 999999999876543
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=8.9e-18 Score=138.73 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=76.5
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
+.++|||+|||.++|+++|+++|+.||.|.+|+|..|+ +|.++|||||+|.+.++|++|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46799999999999999999999999999999999997 9999999999999999999999 799999999999999987
Q ss_pred ccc
Q 039806 92 RRA 94 (398)
Q Consensus 92 ~~~ 94 (398)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=129.48 Aligned_cols=79 Identities=23% Similarity=0.457 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3567899999999999999999999999999999996 689999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++..+
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876654
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=134.64 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=72.3
Q ss_pred cCCCcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC--CeecceEee
Q 039806 10 RLSGIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG--ATVERMELY 86 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~l~gk~i~ 86 (398)
+...+++|||+|||. ++|+++|+++|+.||.|.+|+|+++ +|||||+|++.++|.+||+.||+ ..|.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 344678999999999 9999999999999999999999864 58999999999999999999986 469999999
Q ss_pred eeccccccc
Q 039806 87 VGPFIRRAD 95 (398)
Q Consensus 87 V~~~~~~~~ 95 (398)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999886543
No 126
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.6e-17 Score=144.30 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=78.9
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+. +|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876554
No 127
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=6.2e-18 Score=134.74 Aligned_cols=82 Identities=24% Similarity=0.529 Sum_probs=76.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|..|.+|.++|||||+|.+.++|++|++ |+..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4679999999999999999999999999999999999999999999999999999999999 99999999999999886
Q ss_pred cccc
Q 039806 93 RADR 96 (398)
Q Consensus 93 ~~~~ 96 (398)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6543
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2.1e-17 Score=130.64 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=71.5
Q ss_pred cccCCCcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 8 EARLSGIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
......+++|||+|||. ++|+++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.|||..++|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456788999999998 9999999999999999999999 479999999999999999999999999999999
Q ss_pred eeccccc
Q 039806 87 VGPFIRR 93 (398)
Q Consensus 87 V~~~~~~ 93 (398)
|.++..+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998654
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=132.05 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.|. |+++.+ .++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 344578999999999999999999999999997 777764 5899999999999999999999999999999999999
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-18 Score=142.12 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|.++.+. +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999986666555 99999999999999999999999 999999999999999
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 131
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=132.52 Aligned_cols=84 Identities=25% Similarity=0.325 Sum_probs=76.2
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.| +++.+.+++++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34567899999999999999999999999977 677777899999999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9876544
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=9.6e-18 Score=139.16 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=75.4
Q ss_pred CCcceEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLH----QIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~----~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
..+++|||+|||.++++++|+ ++|+.||.|.+|.+. .++++||||||+|.+.++|.+||+.|||..|.|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 456799999999999999876 699999999998874 36889999999999999999999999999999999999
Q ss_pred eccccccccc
Q 039806 88 GPFIRRADRI 97 (398)
Q Consensus 88 ~~~~~~~~~~ 97 (398)
.++..+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998776553
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=138.67 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=77.9
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGD---IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
.....++|||+|||.++|+++|+++|+.||. |.+|+|+.|.+|+++|||||+|.+.++|++||+ +|+..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999998 899999999999999999999999999999999 999999999999
Q ss_pred eecccccc
Q 039806 87 VGPFIRRA 94 (398)
Q Consensus 87 V~~~~~~~ 94 (398)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99887544
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=7.3e-18 Score=154.31 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFG--DIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G--~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..++|||+||+.++|+++|+++|+.|| .|.+|+|++|+ +|++||||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999998 999999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-17 Score=131.84 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346799999999999999999999999999999997 378999999999999999999999999999999999986
Q ss_pred c
Q 039806 92 R 92 (398)
Q Consensus 92 ~ 92 (398)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=132.25 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc-----eEe
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER-----MEL 85 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g-----k~i 85 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..| |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 345789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred eeecccccccc
Q 039806 86 YVGPFIRRADR 96 (398)
Q Consensus 86 ~V~~~~~~~~~ 96 (398)
.|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999876544
No 137
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=132.56 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCC--eecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGA--TVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~--~l~gk~i~V~~ 89 (398)
..+++|||+|||.++|+++|+++|+.||.|.+|+|++ .||||||+|++.++|.+|++.||+. .|.|+.|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999876 3799999999999999999988764 59999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+..+...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876544
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=131.63 Aligned_cols=83 Identities=24% Similarity=0.335 Sum_probs=75.3
Q ss_pred cccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 8 EARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.......++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456778999999999999999999999999999999975 4799999999999999999999999999999999
Q ss_pred eccccccc
Q 039806 88 GPFIRRAD 95 (398)
Q Consensus 88 ~~~~~~~~ 95 (398)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99876543
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=139.16 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCe----eEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDI----QSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I----~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
..+..+|||+|||+++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567899999999999999999999999975 689999999999999999999999999999996 99999999999
Q ss_pred eeccccc
Q 039806 87 VGPFIRR 93 (398)
Q Consensus 87 V~~~~~~ 93 (398)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887644
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=127.60 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=73.3
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.||+..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44567899999999999999999999999999999995 45999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876544
No 141
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.1e-17 Score=135.30 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=71.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...+|||+|||.++|+++|+++|+.|| .|..|+|..+ .++|||||+|++.++|++||+.|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457999999999999999999999999 8999998643 489999999999999999999999999999999999886
Q ss_pred cc
Q 039806 92 RR 93 (398)
Q Consensus 92 ~~ 93 (398)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 142
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4e-18 Score=127.82 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998 89999999999999999999999 4899999999999764
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=126.99 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=73.0
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
+....++|||+|||.++|+++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999995 45999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 90 FIRRADR 96 (398)
Q Consensus 90 ~~~~~~~ 96 (398)
+.++..+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.5e-17 Score=139.75 Aligned_cols=90 Identities=26% Similarity=0.477 Sum_probs=82.0
Q ss_pred CCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 2 ~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
|+...........++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 75 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 75 WAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp ECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 3444444556678899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred cceEeeeeccc
Q 039806 81 ERMELYVGPFI 91 (398)
Q Consensus 81 ~gk~i~V~~~~ 91 (398)
+|+.|.|.++.
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999999875
No 145
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=130.21 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec--ceEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE--RMELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~--gk~i~V~ 88 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.||+..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999999753 789999999999999999999999999 9999999
Q ss_pred ccccccc
Q 039806 89 PFIRRAD 95 (398)
Q Consensus 89 ~~~~~~~ 95 (398)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9887643
No 146
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-18 Score=137.74 Aligned_cols=85 Identities=18% Similarity=0.315 Sum_probs=74.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|.+..+. +|+++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 356899999999999999999999999999443333332 7889999999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 877655
No 147
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=131.55 Aligned_cols=81 Identities=31% Similarity=0.379 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999875 799999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876544
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-17 Score=130.52 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=71.6
Q ss_pred cCCCcceEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLAS-TIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
+....++|||+|||. ++|+++|+++|+.||.|.+|+| ++|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345678999999998 9999999999999999999999 47999999999999999999999999999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++..+...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 98766544
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=127.00 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.2
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKF--GDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~--G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.....++|||+|||.++|+++|+++|+.| |.|.+|++ .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 99999987 5789999999999999999999999999999999
Q ss_pred ecccccccc
Q 039806 88 GPFIRRADR 96 (398)
Q Consensus 88 ~~~~~~~~~ 96 (398)
.++.++..+
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.3e-17 Score=131.53 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=76.0
Q ss_pred CCcceEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLH----QIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~----~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
..+++|||+|||.++|+++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456899999999999999999 9999999999999874 5778999999999999999999999999999999999
Q ss_pred ecccccccc
Q 039806 88 GPFIRRADR 96 (398)
Q Consensus 88 ~~~~~~~~~ 96 (398)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 998876543
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=124.92 Aligned_cols=75 Identities=29% Similarity=0.332 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh-cCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL-QGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~V~~ 89 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++.. ++|||||+|.+.++|++|++.| |+..++|+.|.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34578999999999999999999999999999999986 5799999999999999999999 99999999999988
Q ss_pred c
Q 039806 90 F 90 (398)
Q Consensus 90 ~ 90 (398)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=4.5e-17 Score=131.35 Aligned_cols=79 Identities=28% Similarity=0.447 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999999999999999999999999996 699999999999999999999999999999999998
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
..+..+
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 876543
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=5.6e-17 Score=129.48 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
.+..++|||+|||.++|+++|+++|+.||.|.+|+|. ++||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3457899999999999999999999999999999985 579999999999999999999999999999999999
Q ss_pred ccccccc
Q 039806 91 IRRADRI 97 (398)
Q Consensus 91 ~~~~~~~ 97 (398)
.++..+.
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8766543
No 154
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=3.8e-18 Score=143.69 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.|| |.+|+|+.|++|+++|||||+|++.++|++|| .+|+..|+|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345567999999999999999999999999 77999999999999999999999999999999 6899999999999988
Q ss_pred ccccc
Q 039806 90 FIRRA 94 (398)
Q Consensus 90 ~~~~~ 94 (398)
+..+.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76544
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.4e-17 Score=137.71 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCee--EEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQ--SSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~--~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|++|+++|||||+|++.++|++||+ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456889999999999999999999999 677 9999999999999999999999999999998 478999999999988
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7654
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=134.23 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC--CeecceEeee
Q 039806 11 LSGIGNAFVKNLAST-IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG--ATVERMELYV 87 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~-vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~l~gk~i~V 87 (398)
...+++|||+|||.+ +|+++|+++|+.||.|.+|+|.+ +||||||+|++.++|++||+.||+ ..|.|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445789999999998 99999999999999999999974 679999999999999999998864 5699999999
Q ss_pred ecccccccc
Q 039806 88 GPFIRRADR 96 (398)
Q Consensus 88 ~~~~~~~~~ 96 (398)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 998766543
No 157
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-18 Score=141.97 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=80.8
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQS--------SKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~--------vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
....++|||+|||.++|+++|+++|+.||.|.+ |+|..|+ +|.++|||||+|.+.++|++||+.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 9999997 8999999999999999999999999999999
Q ss_pred ceEeeeeccccccccc
Q 039806 82 RMELYVGPFIRRADRI 97 (398)
Q Consensus 82 gk~i~V~~~~~~~~~~ 97 (398)
|+.|.|.++.++..+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998776553
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=128.21 Aligned_cols=80 Identities=25% Similarity=0.413 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC-CeecceEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGD-IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG-ATVERMELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~-I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng-~~l~gk~i~V~ 88 (398)
....++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 345689999999999999999999999999 6666662 679999999999999999999999 99999999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876655
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=5.3e-17 Score=142.68 Aligned_cols=83 Identities=18% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 039806 92 RRA 94 (398)
Q Consensus 92 ~~~ 94 (398)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 543
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=133.17 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
+...++|||+|||.++|+++|+++|+.||.|.+|+|.. ++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34568999999999999999999999999999999864 6799999999999999999999999999999999998
Q ss_pred cc
Q 039806 91 IR 92 (398)
Q Consensus 91 ~~ 92 (398)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.1e-16 Score=129.47 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLAST-IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~-vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.+ +|+++|+++|+.||.|.+|+| ++|||||+|++.++|++|++.||+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999 999999999999999999999 6799999999999999999999999999999999998
Q ss_pred ccccc
Q 039806 91 IRRAD 95 (398)
Q Consensus 91 ~~~~~ 95 (398)
.....
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=7.4e-17 Score=137.79 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=74.6
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+ ++|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred cccc
Q 039806 90 FIRR 93 (398)
Q Consensus 90 ~~~~ 93 (398)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 163
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=124.84 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
....++|||+|| ++|+++|+++|+.||.|.+|+|. .++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346789999997 89999999999999999999994 47899999999999999999999999999999999999
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
.++..+
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876554
No 164
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=2.8e-16 Score=135.19 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=79.2
Q ss_pred EEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccccc---------cccCCCCceEEeeCCCc
Q 039806 43 SSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADR---------IQEGSSFNNLYVKNLDD 113 (398)
Q Consensus 43 ~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~~~---------~~~~~~~~~lfV~nLp~ 113 (398)
+++|..+.. +++|||||+|.+.++|++|++.+++....+..+.+......... .......++|||+|||+
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 678888764 69999999999999999999988764333333333221111100 00111345555555555
Q ss_pred cccHHHHHHHHccCCCEEEEEEeeCCCCCccccCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCcccCHHHH
Q 039806 114 DMTEEILVEKFSEFGKITSLVISKDANGTSKGFGSKVLYVARAQKKAERKAILRAQFERMRKERAELYKNINDEVDEIEL 193 (398)
Q Consensus 114 ~~tee~L~~~F~~fG~I~~~~i~~d~~g~s~Gf~~~~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~v~nL~~~vtee~L 193 (398)
++|+++|+++|+.||
T Consensus 81 ~~~~~~l~~~F~~~G----------------------------------------------------------------- 95 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYG----------------------------------------------------------------- 95 (158)
T ss_dssp TCCHHHHHHHHHHHS-----------------------------------------------------------------
T ss_pred CCCHHHHHHHHHhcC-----------------------------------------------------------------
Confidence 555555555555555
Q ss_pred HHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 194 KQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 194 ~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 96 --------~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 136 (158)
T 2kn4_A 96 --------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 136 (158)
T ss_dssp --------CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE
T ss_pred --------CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 55555555553 6777787 999999999999998776544
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=123.62 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~ 89 (398)
..+.++|||+|||.++|+++|+++|+.||.|.+| +.+. +|+ ||||+|.+.++|++||+ |||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 4554 555 99999999999999999 999999999999998
Q ss_pred cccccc
Q 039806 90 FIRRAD 95 (398)
Q Consensus 90 ~~~~~~ 95 (398)
+..+..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 875543
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=2.9e-16 Score=129.91 Aligned_cols=80 Identities=28% Similarity=0.311 Sum_probs=72.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeE-EEEEecCHHHHHHHHHHhcCCeecc--eEeeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGY-GFVQYSTPESALDAIEKLQGATVER--MELYVG 88 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~-aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~ 88 (398)
+..-+|||+||++.+|+++|+++|++||.|.+|+|..+ ++|| |||+|++.++|++|++.|||..|.| +.|+|.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 45677889999999999999999999999999999874 3677 9999999999999999999999988 899999
Q ss_pred ccccccc
Q 039806 89 PFIRRAD 95 (398)
Q Consensus 89 ~~~~~~~ 95 (398)
++..+..
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9876543
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.3e-16 Score=135.47 Aligned_cols=82 Identities=27% Similarity=0.258 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~ 88 (398)
.+...+|||+||++++|+++|+++|++||.|.+|+|..+. ++|||||+|++.++|++|++.|||..|.| +.|+|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 4556789999999999999999999999999999997654 67999999999999999999999999966 999999
Q ss_pred ccccccc
Q 039806 89 PFIRRAD 95 (398)
Q Consensus 89 ~~~~~~~ 95 (398)
++..+..
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9987643
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=125.12 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=72.6
Q ss_pred cCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeee
Q 039806 10 RLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSS-KVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVG 88 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~v-ki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~ 88 (398)
.....++|||+|||.++|+++|+++|+.||.|.+| .|+.++ ..|.|||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34457899999999999999999999999999999 488776 22349999999999999999999999999999999
Q ss_pred ccccc
Q 039806 89 PFIRR 93 (398)
Q Consensus 89 ~~~~~ 93 (398)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98766
No 169
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.66 E-value=4.2e-18 Score=127.52 Aligned_cols=42 Identities=33% Similarity=0.573 Sum_probs=40.3
Q ss_pred hhHHhhhhcCChHHHhhhhhcccchhhhccccceeceeeeee
Q 039806 352 ENLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKGQF 393 (398)
Q Consensus 352 ~~~~s~la~a~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~ 393 (398)
..++++||+++|++||+||||+|||||++++|++|+|||||+
T Consensus 8 ~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGML 49 (85)
T 2dyd_A 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGML 49 (85)
T ss_dssp TTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhh
Confidence 358999999999999999999999999999999999999997
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.6e-16 Score=123.16 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|||.++|+++|+++|+.| .|.+|++. +++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 356789999999999999999999999 99999994 589999999999999999999999999999999999875
Q ss_pred c
Q 039806 92 R 92 (398)
Q Consensus 92 ~ 92 (398)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=4e-16 Score=135.42 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999997 9999999999999999999999999999999999999886
No 172
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=135.74 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEE------EEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSK------VVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vk------i~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
..+++|||+|||.++|+++|+++|+.||.|.+|. +....+|+++|||||+|.+.++|.+||+.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999998751 2222478999999999999999999999999999999999
Q ss_pred eeecccccccc
Q 039806 86 YVGPFIRRADR 96 (398)
Q Consensus 86 ~V~~~~~~~~~ 96 (398)
.|.++.....+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999765544
No 173
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.8e-16 Score=129.18 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=69.4
Q ss_pred ceEEEcCC----CCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecC----HHH----HHHHHH--HhcCCe
Q 039806 15 GNAFVKNL----ASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYST----PES----ALDAIE--KLQGAT 79 (398)
Q Consensus 15 ~~lfV~nL----p~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~----~e~----A~~Ai~--~lng~~ 79 (398)
.+|||+|| |+++++++|+++|+.||.|.+|+++.|+ +|.++|||||+|.+ +++ |.+||+ .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999 99999999999996 433 899988 789999
Q ss_pred ecceEeeeecc
Q 039806 80 VERMELYVGPF 90 (398)
Q Consensus 80 l~gk~i~V~~~ 90 (398)
|+|+.|+|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999863
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=129.80 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-C---CCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-E---GKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~---g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
+..++|||+|||.++|+++|+++|+.||.|. ++++.+. + |+++|||||+|++.++|++||+.++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 8888877 5 7999999999999999999999885 378888877
Q ss_pred eccc
Q 039806 88 GPFI 91 (398)
Q Consensus 88 ~~~~ 91 (398)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 175
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.65 E-value=5.7e-18 Score=126.78 Aligned_cols=43 Identities=30% Similarity=0.570 Sum_probs=41.0
Q ss_pred hhHHhhhhcCChHHHhhhhhcccchhhhccccceeceeeeeee
Q 039806 352 ENLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKGQFR 394 (398)
Q Consensus 352 ~~~~s~la~a~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~~ 394 (398)
+.++++||+|+|++||+||||+|||||++++|++|+|||||+-
T Consensus 9 ~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLL 51 (85)
T 1nmr_A 9 QNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLL 51 (85)
T ss_dssp CTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCS
T ss_pred ccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHh
Confidence 4789999999999999999999999999999999999999973
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=5e-16 Score=139.90 Aligned_cols=85 Identities=24% Similarity=0.466 Sum_probs=79.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 455799999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred cccccc
Q 039806 91 IRRADR 96 (398)
Q Consensus 91 ~~~~~~ 96 (398)
..+...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876443
No 177
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=126.85 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.9
Q ss_pred CCCcceEEE--cCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee-----cce
Q 039806 11 LSGIGNAFV--KNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV-----ERM 83 (398)
Q Consensus 11 ~~~~~~lfV--~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l-----~gk 83 (398)
...+++||| +||+.++|+++|+++|++||.|.+|.|.. +||||||+|++.++|++|++.|||..| .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 67999999999999999999999998864 479999999999999999999999988 689
Q ss_pred Eeeeecccc
Q 039806 84 ELYVGPFIR 92 (398)
Q Consensus 84 ~i~V~~~~~ 92 (398)
.|+|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999988753
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=7.4e-16 Score=136.89 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=79.1
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred cccc
Q 039806 91 IRRA 94 (398)
Q Consensus 91 ~~~~ 94 (398)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=4.5e-16 Score=155.37 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=81.0
Q ss_pred ccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 7 SEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 7 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
+.......++|||+|||.+||+++|.++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+||+.|||..|.|+.|
T Consensus 95 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 33444556899999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred eeecccccc
Q 039806 86 YVGPFIRRA 94 (398)
Q Consensus 86 ~V~~~~~~~ 94 (398)
.|.++..+.
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999987654
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=4.8e-16 Score=120.79 Aligned_cols=77 Identities=14% Similarity=0.301 Sum_probs=63.3
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee--cceEeeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV--ERMELYVG 88 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l--~gk~i~V~ 88 (398)
.....+|||+|||.++|+++|+++|++||.|.+|+|+++ +||||||+|++.++|++ +++..+ .|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345679999999999999999999999999999999875 89999999999999983 566654 59999999
Q ss_pred ccccccc
Q 039806 89 PFIRRAD 95 (398)
Q Consensus 89 ~~~~~~~ 95 (398)
++.++.+
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9887654
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=119.62 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=66.8
Q ss_pred Ccce-EEEcCCCCCCcHHH----HHHHHhcc-CCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 13 GIGN-AFVKNLASTIDNLK----LHQIFSKF-GDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 13 ~~~~-lfV~nLp~~vte~~----L~~~F~~~-G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
++.+ |||+|||.++++++ |+++|+.| |+|++| +| |+|||.|.+.++|++|++.|||..+.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3445 99999999999888 66899999 599988 23 9999999999999999999999999999999
Q ss_pred eecccccccc
Q 039806 87 VGPFIRRADR 96 (398)
Q Consensus 87 V~~~~~~~~~ 96 (398)
|.++..+++-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999877654
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2e-16 Score=129.06 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE-----ee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME-----LY 86 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~-----i~ 86 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+ |||||+|++.++|++||+.|||..|+|+. |.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999998 55
Q ss_pred eecccc
Q 039806 87 VGPFIR 92 (398)
Q Consensus 87 V~~~~~ 92 (398)
|....+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 555443
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=8.9e-16 Score=136.11 Aligned_cols=84 Identities=18% Similarity=0.385 Sum_probs=74.9
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|.+||+. ++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 45799999999999999999999999999999999998 899999999999999999999986 8999999999999998
Q ss_pred cccccc
Q 039806 92 RRADRI 97 (398)
Q Consensus 92 ~~~~~~ 97 (398)
++.+..
T Consensus 182 ~k~~~~ 187 (196)
T 1l3k_A 182 SKQEMA 187 (196)
T ss_dssp ------
T ss_pred ChhHhc
Confidence 877653
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.8e-15 Score=121.20 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=74.0
Q ss_pred cCCCcceEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEEEcC--CCCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 10 RLSGIGNAFVKNLAS-----TIDNLKLHQIFSKFGDIQSSKVVVSQ--EGKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 10 ~~~~~~~lfV~nLp~-----~vte~~L~~~F~~~G~I~~vki~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
....+++|+|+||-. +-++++|++.|++||.|.+|+|.+++ ++.++|||||+|.+.++|.+|++.|||..++|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 345678999999973 23789999999999999999999986 36899999999999999999999999999999
Q ss_pred eEeeeecccc
Q 039806 83 MELYVGPFIR 92 (398)
Q Consensus 83 k~i~V~~~~~ 92 (398)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999998864
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=9.1e-16 Score=133.32 Aligned_cols=78 Identities=22% Similarity=0.366 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec---ceEeeeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE---RMELYVGP 89 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~---gk~i~V~~ 89 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+. +++|.|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 567999999999999999999999999999999999999999999999999999999999999998776 49999987
Q ss_pred c
Q 039806 90 F 90 (398)
Q Consensus 90 ~ 90 (398)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.4e-15 Score=123.76 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeE-EEEEecCHHHHHHHHHHhcCCeecc--eEeeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGY-GFVQYSTPESALDAIEKLQGATVER--MELYVG 88 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~-aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V~ 88 (398)
+....|||+||+..+|+++|+++|+.||.|.+|+|... .|| |||+|++.++|.+|++.|||..|.| +.|+|.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44556789999999999999999999999999999763 286 9999999999999999999999987 689999
Q ss_pred cccccc
Q 039806 89 PFIRRA 94 (398)
Q Consensus 89 ~~~~~~ 94 (398)
++..+.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 987664
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=3e-16 Score=135.58 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=75.9
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++..|. +|.++|||||+|.+.++|.+|++ +|+..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999997 89999999999999999999998 89999999999999987
Q ss_pred cc
Q 039806 92 RR 93 (398)
Q Consensus 92 ~~ 93 (398)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 188
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.62 E-value=1.2e-17 Score=126.87 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=40.3
Q ss_pred hhHHhhhhcCChHHHhhhhhcccchhhhc--cccceeceeeeee
Q 039806 352 ENLSSMLVATSPDERKDILGQRLYPLVKK--LKVITHIFVKGQF 393 (398)
Q Consensus 352 ~~~~s~la~a~p~~qk~mLGe~Lyplv~~--~~~~~~~~~~~~~ 393 (398)
+.+||+||+|+|++||+||||+|||||++ ++|++|+|||||+
T Consensus 6 p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGML 49 (92)
T 1ifw_A 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMI 49 (92)
T ss_dssp SSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhH
Confidence 46889999999999999999999999999 9999999999997
No 189
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=1.8e-15 Score=130.64 Aligned_cols=80 Identities=31% Similarity=0.461 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecc--eEeee
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVER--MELYV 87 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g--k~i~V 87 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456799999999999999999999999999999999998 99999999999999999999999999999988 99999
Q ss_pred ecc
Q 039806 88 GPF 90 (398)
Q Consensus 88 ~~~ 90 (398)
.++
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=8.2e-16 Score=118.47 Aligned_cols=71 Identities=14% Similarity=0.331 Sum_probs=66.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKF----G-------DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
..++|||+|||.++|+++|+++|+.| | .|.+|++.+ ++|||||+|.+.++|++|+ .|||..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46799999999999999999999999 8 999999965 4799999999999999999 89999999
Q ss_pred ceEeeeec
Q 039806 82 RMELYVGP 89 (398)
Q Consensus 82 gk~i~V~~ 89 (398)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 191
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2e-15 Score=130.02 Aligned_cols=79 Identities=30% Similarity=0.491 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-CCCceeEEEEEecCHHHHHHHHHHhcCCeecceE--eeee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-EGKSKGYGFVQYSTPESALDAIEKLQGATVERME--LYVG 88 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~--i~V~ 88 (398)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456789999999999999999999999999999999998 9999999999999999999999999999999975 7776
Q ss_pred cc
Q 039806 89 PF 90 (398)
Q Consensus 89 ~~ 90 (398)
++
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-16 Score=121.07 Aligned_cols=79 Identities=15% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
..+++|||+|||.++|+++|+++|+.||.|.+|+|..+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999999865 789999999999999865331 345689999999988
Q ss_pred ccccc
Q 039806 92 RRADR 96 (398)
Q Consensus 92 ~~~~~ 96 (398)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=1.3e-15 Score=132.78 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 2 WSTPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 2 ~s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
|+...........++|||+|||.++|+++|+++|+.||.|..+ +.+|.++|||||+|.+.++|.+|++.|||..|+
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3444444444567899999999999999999999999988765 558999999999999999999999999999999
Q ss_pred ceEeeeeccccc
Q 039806 82 RMELYVGPFIRR 93 (398)
Q Consensus 82 gk~i~V~~~~~~ 93 (398)
|+.|.|.++.++
T Consensus 163 g~~i~v~~a~~k 174 (175)
T 1fje_B 163 GRSVSLYYTGEK 174 (175)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEecCCC
Confidence 999999998765
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=2.4e-15 Score=133.91 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=73.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRR 93 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~ 93 (398)
.++|||+|||.++|+++|+++|+.||.|.+|+|.++.+|.++|||||+|++.++|++|++.+ +..++|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999855 56999999999876543
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2e-15 Score=124.19 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeeccc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFI 91 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~ 91 (398)
...++|||+|| ++|+++|+++|+.||.|.+|+|. .++|||||+|++.++|++||+.|||..|+|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999997 69999999999999999999995 488999999999999999999999999999999999988
Q ss_pred ccccc
Q 039806 92 RRADR 96 (398)
Q Consensus 92 ~~~~~ 96 (398)
++...
T Consensus 110 ~~~~~ 114 (121)
T 2bz2_A 110 KQPML 114 (121)
T ss_dssp SSCC-
T ss_pred CCCCC
Confidence 76543
No 196
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.59 E-value=7.4e-17 Score=121.92 Aligned_cols=42 Identities=31% Similarity=0.580 Sum_probs=40.3
Q ss_pred hhHHhhhhcCChHHHhhhhhcccchhhhccccceeceeeeee
Q 039806 352 ENLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKGQF 393 (398)
Q Consensus 352 ~~~~s~la~a~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~ 393 (398)
..++|+||+|+|++||+||||+|||||++++|++|+|||||+
T Consensus 6 ~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGML 47 (88)
T 3kuj_A 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 47 (88)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred cchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHh
Confidence 368999999999999999999999999999999999999996
No 197
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.56 E-value=1.4e-15 Score=125.23 Aligned_cols=42 Identities=31% Similarity=0.566 Sum_probs=40.4
Q ss_pred hHHhhhhcCChHHHhhhhhcccchhhhccccceeceeeeeee
Q 039806 353 NLSSMLVATSPDERKDILGQRLYPLVKKLKVITHIFVKGQFR 394 (398)
Q Consensus 353 ~~~s~la~a~p~~qk~mLGe~Lyplv~~~~~~~~~~~~~~~~ 394 (398)
.++++||+|+|++||+||||+|||||++++|++|+||||||-
T Consensus 53 l~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLL 94 (144)
T 1g9l_A 53 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 94 (144)
T ss_dssp CSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhc
Confidence 589999999999999999999999999999999999999973
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=116.88 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=72.4
Q ss_pred ccCCCcceEEEcCCCCCCc-----------HHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 039806 9 ARLSGIGNAFVKNLASTID-----------NLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQG 77 (398)
Q Consensus 9 ~~~~~~~~lfV~nLp~~vt-----------e~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng 77 (398)
.+...+++|+|+||-...+ +++|+++|++||.|.+|.| .|. .++|||||+|.+.++|.+|++.|||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 3566789999999954433 6899999999999999966 544 3899999999999999999999999
Q ss_pred CeecceEeeeeccccccc
Q 039806 78 ATVERMELYVGPFIRRAD 95 (398)
Q Consensus 78 ~~l~gk~i~V~~~~~~~~ 95 (398)
..|+|+.|.|.++..+..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999876544
No 199
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=2.5e-14 Score=121.93 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=67.9
Q ss_pred EEEEEcCCCCceeEEEEEecCHHHHHHHHHHh-cCCeecceEeeeeccccccccc------------ccCCCCceEEeeC
Q 039806 44 SKVVVSQEGKSKGYGFVQYSTPESALDAIEKL-QGATVERMELYVGPFIRRADRI------------QEGSSFNNLYVKN 110 (398)
Q Consensus 44 vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~l~gk~i~V~~~~~~~~~~------------~~~~~~~~lfV~n 110 (398)
..+..+. ...+|+++|+|.+.++|++|++.+ ||..++| .|.+.++..+.... ......++|||+|
T Consensus 3 ~al~l~g-~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 80 (150)
T 2i2y_A 3 YKLILNG-KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGN 80 (150)
T ss_dssp EEEEECC-SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEES
T ss_pred eEeeecc-ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeC
Confidence 3444432 356899999999999999999999 9999999 99999887643221 1112567788888
Q ss_pred CCccccHHHHHHHHccCCCEEEEEEeeC
Q 039806 111 LDDDMTEEILVEKFSEFGKITSLVISKD 138 (398)
Q Consensus 111 Lp~~~tee~L~~~F~~fG~I~~~~i~~d 138 (398)
||+++|+++|+++|+.||.|.++.+++|
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 7777777777777777776666665543
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=4e-15 Score=119.02 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=64.5
Q ss_pred EcCCCCCCcHHHHHHHH------------hccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 19 VKNLASTIDNLKLHQIF------------SKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 19 V~nLp~~vte~~L~~~F------------~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
+.||+..+|+++|.+.| ++||.|.+|+|.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777887777666 999999999999988889999999999999999999999999999999999
Q ss_pred eecc
Q 039806 87 VGPF 90 (398)
Q Consensus 87 V~~~ 90 (398)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 201
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.1e-14 Score=133.14 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCC---------cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCee--
Q 039806 12 SGIGNAFVKNLASTI---------DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATV-- 80 (398)
Q Consensus 12 ~~~~~lfV~nLp~~v---------te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l-- 80 (398)
...++|||+||+.++ ++++|+++|+.||.|.+|+|+. +||||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 457899999999998 7999999999999999999985 689999999999999999999999999
Q ss_pred ----------cceEeeeeccccccc
Q 039806 81 ----------ERMELYVGPFIRRAD 95 (398)
Q Consensus 81 ----------~gk~i~V~~~~~~~~ 95 (398)
.|+.|.|.++.....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.7e-14 Score=131.42 Aligned_cols=84 Identities=32% Similarity=0.481 Sum_probs=76.1
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc-CCeec---ceEeeee
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ-GATVE---RMELYVG 88 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln-g~~l~---gk~i~V~ 88 (398)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.|.+|+++|||||+|.+.++|.+||+.|| +..+. ++.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999994 55555 8999999
Q ss_pred cccccccc
Q 039806 89 PFIRRADR 96 (398)
Q Consensus 89 ~~~~~~~~ 96 (398)
++......
T Consensus 175 ~~~~~~~~ 182 (261)
T 3sde_A 175 PMEQFDDE 182 (261)
T ss_dssp ECCCEESS
T ss_pred eccccCcc
Confidence 98765443
No 203
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=7.2e-14 Score=131.32 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-ceEeeeecc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-RMELYVGPF 90 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-gk~i~V~~~ 90 (398)
...++|||+|||.++|+++|+++|+.||.|.+|+|..++ +|||||+|.+.++|.+|++.|||..|. |+.|+|.++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 356789999999999999999999999999999999654 589999999999999999999999999 999999987
Q ss_pred c
Q 039806 91 I 91 (398)
Q Consensus 91 ~ 91 (398)
.
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 204
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=3.7e-14 Score=113.52 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=70.6
Q ss_pred CcceEEEcCCC--CCCc--------HHHHHHHHhccCCeeEEEEEEcCC---CCceeEEEEEecCHHHHHHHHHHhcCCe
Q 039806 13 GIGNAFVKNLA--STID--------NLKLHQIFSKFGDIQSSKVVVSQE---GKSKGYGFVQYSTPESALDAIEKLQGAT 79 (398)
Q Consensus 13 ~~~~lfV~nLp--~~vt--------e~~L~~~F~~~G~I~~vki~~d~~---g~skg~aFV~F~~~e~A~~Ai~~lng~~ 79 (398)
.++.|.|+|+= .++. ++||++.|++||.|.+|+|.++.. +.++|||||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 57789999983 3442 368999999999999999999873 3689999999999999999999999999
Q ss_pred ecceEeeeeccccc
Q 039806 80 VERMELYVGPFIRR 93 (398)
Q Consensus 80 l~gk~i~V~~~~~~ 93 (398)
++||.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987543
No 205
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=3.4e-14 Score=127.70 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCe--eEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce----Eee
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDI--QSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM----ELY 86 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I--~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk----~i~ 86 (398)
.+++|||+|||.++|+++|+++|+.||.| .+|++..+. +.++|||||+|++.++|.+||+.|||..|.|+ ++.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 35689999999999999999999999999 899998876 55679999999999999999999999999886 455
Q ss_pred eec
Q 039806 87 VGP 89 (398)
Q Consensus 87 V~~ 89 (398)
|++
T Consensus 201 vk~ 203 (205)
T 3tyt_A 201 LKL 203 (205)
T ss_dssp CEE
T ss_pred EEe
Confidence 543
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=9e-14 Score=113.52 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCC--CC---cHHHHHHHHhccCCeeEEEEEEcC-----CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 039806 11 LSGIGNAFVKNLAS--TI---DNLKLHQIFSKFGDIQSSKVVVSQ-----EGKSKGYGFVQYSTPESALDAIEKLQGATV 80 (398)
Q Consensus 11 ~~~~~~lfV~nLp~--~v---te~~L~~~F~~~G~I~~vki~~d~-----~g~skg~aFV~F~~~e~A~~Ai~~lng~~l 80 (398)
...++.|+|+|+-. ++ .++||++.|++||.|.+|+|.++. ++.++||+||+|.+.++|.+|++.|||..+
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 34678999999942 22 468999999999999999999986 257889999999999999999999999999
Q ss_pred cceEeeeecccc
Q 039806 81 ERMELYVGPFIR 92 (398)
Q Consensus 81 ~gk~i~V~~~~~ 92 (398)
+|+.|.|.++..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999998753
No 207
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=122.42 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=70.6
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-ceEeeeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-RMELYVGPF 90 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-gk~i~V~~~ 90 (398)
.+++|||+|||.++|+++|+++|+.|| .|.+|++..+ ++|||||+|.+.++|.+|++.|||..++ |+.|.|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 378899999999999999999999999 9999999664 4789999999999999999999999999 999999997
Q ss_pred cc
Q 039806 91 IR 92 (398)
Q Consensus 91 ~~ 92 (398)
.+
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 208
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=2e-13 Score=124.66 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=70.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec-ceEeeeeccc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE-RMELYVGPFI 91 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~-gk~i~V~~~~ 91 (398)
+++|||+|||.++|+++|+++|+.|| .|.+|++..+ ++|||||+|.+.++|.+|++.|||..+. |+.|.|.++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 68899999999999999999999999 9999999653 4789999999999999999999999999 9999999986
Q ss_pred cc
Q 039806 92 RR 93 (398)
Q Consensus 92 ~~ 93 (398)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 209
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.5e-13 Score=104.14 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred CCCcceEEEcCCC-------CCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecce
Q 039806 11 LSGIGNAFVKNLA-------STIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERM 83 (398)
Q Consensus 11 ~~~~~~lfV~nLp-------~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk 83 (398)
.+...+|.|+-.. .++|+++|+++|++||.|.+|+|+ ++++|||||+|++.++|++||+.++ .+.|+
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCC
Confidence 3446678887665 458999999999999999999998 4689999999999999999999744 46799
Q ss_pred Eeeeeccccccc
Q 039806 84 ELYVGPFIRRAD 95 (398)
Q Consensus 84 ~i~V~~~~~~~~ 95 (398)
.|.|.++..+..
T Consensus 81 ~l~V~~a~~~~~ 92 (100)
T 2d9o_A 81 PLKISWLEGQPQ 92 (100)
T ss_dssp BCEEECSSCCCC
T ss_pred eEEEEEccCCCC
Confidence 999999876543
No 210
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=105.99 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=59.8
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.++++|+|||.++|+++|+++|++||.|++|+|++|+ +|+++|| ||+|.+.++|.+|+..++...
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 85 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR 85 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999999999999999999999999999999997 8999999 999999999999998876543
No 211
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.36 E-value=8.3e-13 Score=106.56 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=61.6
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
..++++|+||++++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++....
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35688999999999999999999999999999999998 7999999 9999999999999998876543
No 212
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.1e-12 Score=125.98 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=65.8
Q ss_pred CCCcceEEEcC--CCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec---ce--
Q 039806 11 LSGIGNAFVKN--LASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE---RM-- 83 (398)
Q Consensus 11 ~~~~~~lfV~n--Lp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~---gk-- 83 (398)
...+.+|||+| |+.++|+++|+++|++||.|.+|++.. +||||||+|++.++|++||+.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 578999999999999999999987743 6799999999999999999999999873 34
Q ss_pred Eeeeeccc
Q 039806 84 ELYVGPFI 91 (398)
Q Consensus 84 ~i~V~~~~ 91 (398)
.++|.+..
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67777764
No 213
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.34 E-value=5.2e-13 Score=104.76 Aligned_cols=63 Identities=6% Similarity=0.154 Sum_probs=58.2
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCC--eEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGT--ISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~--I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.+++|+|||+++|+++|+++|++||. |.+|+|++|+ +|++||| ||+|.+.++|.+|+..++..
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 57899999999999999999999995 6799999997 8999999 99999999999999888754
No 214
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=106.07 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=56.7
Q ss_pred hhccccCCCcccCHHHHHHHhhcCC-CeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCG-TISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG-~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
++++|+|||.++||++|+++|++|| .|++|+|++|+ +|++||| ||+|.+.++|.+|+..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 5788999999999999999999999 89999999997 8999999 999999999999987653
No 215
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3e-12 Score=102.00 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=57.6
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l 234 (398)
...++++|+|||.++|+++|+++|++||.|++|+|++|..|+++|| ||+|.+.++|.+|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999999999988999999 999999999999986
No 216
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=5e-12 Score=102.46 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCC----------cHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeec
Q 039806 12 SGIGNAFVKNLASTI----------DNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVE 81 (398)
Q Consensus 12 ~~~~~lfV~nLp~~v----------te~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~ 81 (398)
..++.|.|+|+=..- .++||++.|++||.|.+|+|.++. ++|||||+|.+.++|.+|++.|||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356789999886432 245789999999999999996653 6899999999999999999999999999
Q ss_pred ceEeeeecccc
Q 039806 82 RMELYVGPFIR 92 (398)
Q Consensus 82 gk~i~V~~~~~ 92 (398)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999998753
No 217
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.28 E-value=2.6e-12 Score=101.66 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=61.6
Q ss_pred hhhhhccccCCCc------ccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNIND------EVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~------~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+++++|+|||. ++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 3467899999999 99999999999999999999999998 6999999 999999999999998877554
No 218
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.28 E-value=1.4e-13 Score=96.83 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=27.4
Q ss_pred Hhhhhhcccchhhhccccceeceeeeee
Q 039806 366 RKDILGQRLYPLVKKLKVITHIFVKGQF 393 (398)
Q Consensus 366 qk~mLGe~Lyplv~~~~~~~~~~~~~~~ 393 (398)
||+||||+|||+|++++|++|+|||||+
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGML 28 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGML 28 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhh
Confidence 7999999999999999999999999997
No 219
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.26 E-value=9.1e-12 Score=97.24 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=62.1
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+|||.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999999999999999 999999999999998776543
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.26 E-value=4.9e-12 Score=102.74 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=57.7
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+++|+|||.++|+++|+++|++||.|++|+|++|. +.+||| ||+|.+.++|.+|+.+++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGML 69 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCE
Confidence 3568999999999999999999999999999999985 458999 999999999999998877544
No 221
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.26 E-value=4.7e-12 Score=98.11 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred hhccccCCCcccCHHHHHHHhhcCC--CeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCG--TISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG--~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.+++|+||+.++|+++|+++|++|| .|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 69 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 3678899999999999999999999 99999999997 9999999 999999999999998877654
No 222
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=95.15 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=59.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 45788999999999999999999999999999999996 8999999 99999999999999877654
No 223
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.24 E-value=9.4e-12 Score=99.09 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=61.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 457899999999999999999999999999999999999999999 999999999999998877654
No 224
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.6e-12 Score=95.64 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=60.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 45788999999999999999999999999999999986 8999999 999999999999998777543
No 225
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.24 E-value=9.2e-12 Score=95.59 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=57.8
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
....++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 3456789999999999999999999999999999999997 7999999 9999999999999843
No 226
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.23 E-value=1.7e-11 Score=94.42 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=59.4
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
...++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+ .++..
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC
Confidence 346789999999999999999999999999999999997 8999999 99999999999998 66543
No 227
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=97.21 Aligned_cols=66 Identities=11% Similarity=0.214 Sum_probs=60.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 457789999999999999999999999999999999999999999 999999999999998877543
No 228
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=95.05 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=60.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 456789999999999999999999999999999999987 7899999 999999999999998876543
No 229
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=99.47 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=61.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467899999999999999999999999999999999999999999 999999999999998877544
No 230
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.22 E-value=1.4e-11 Score=96.58 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=59.8
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+++++|+||+.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 4678999999999999999999999999999999986 7999999 999999999999998776543
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=7.6e-12 Score=99.44 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=54.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSY 233 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~ 233 (398)
..++++|+|||+++|+++|+++|++||. ++|+|++|++|+++|| ||+|.+.++|.+|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999994 5999999999999999 99999999999998
No 232
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=99.62 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=57.1
Q ss_pred HhhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHH
Q 039806 172 RMRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 172 ~~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
.....++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 34556889999999999999999999999999999999987 7999999 99999999999998765
No 233
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=98.05 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=61.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhc-CCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQ-CGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~-fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++|+++|+++|++ ||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 34578999999999999999999999 99999999999999999999 999999999999998777543
No 234
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.21 E-value=1.9e-11 Score=92.77 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=58.5
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.+++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe
Confidence 367889999999999999999999999999999995 8999999 999999999999998776543
No 235
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=95.26 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=60.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 71 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 35688999999999999999999999999999999987 7999999 999999999999998877543
No 236
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=1.4e-11 Score=96.91 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=60.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 74 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45789999999999999999999999999999999998 9999999 999999999999998776544
No 237
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=98.18 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=55.0
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
....++++|+|||+++||++|+++|++||.|++|+|+++ ||| ||+|++.++|.+|+..++.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 345678999999999999999999999999999999965 788 9999999999999987653
No 238
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.20 E-value=2.1e-11 Score=97.35 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=62.1
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+||+.++++++|+++|++||.|++|+|+++.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999999999999999 999999999999998876543
No 239
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.19 E-value=1.5e-11 Score=93.78 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=60.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 346788999999999999999999999999999999985 8999999 999999999999998776543
No 240
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=100.40 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=61.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..+....
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS 72 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457889999999999999999999999999999999999999999 999999999999998766443
No 241
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.19 E-value=1e-11 Score=99.04 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=61.3
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc
Confidence 345778999999999999999999999999999999987 7999999 999999999999998887654
No 242
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=95.73 Aligned_cols=63 Identities=16% Similarity=0.329 Sum_probs=57.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+. ++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~ 72 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 72 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence 345789999999999999999999999999999999987 7999999 999999999999986 54
No 243
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=2e-11 Score=98.12 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=59.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|. +|.++|| ||+|.+.++|.+|+..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999997 7899999 999999999999998876
No 244
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.19 E-value=1.8e-11 Score=99.16 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=60.8
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE
Confidence 35789999999999999999999999999999999998 8999999 999999999999998876543
No 245
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.5e-11 Score=97.91 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=57.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEE-EEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISS-VKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s-vki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...+++|+|||.++++++|+++|++||.|.+ |+|++|.+|+++|| ||+|.+.++|.+|+..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 3567889999999999999999999999998 99999999999999 9999999999999876
No 246
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.1e-11 Score=98.67 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=59.8
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+ .++...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 90 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR 90 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE
Confidence 345789999999999999999999999999999999988 6899999 99999999999999 776543
No 247
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=96.48 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=60.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeE-EEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTIS-SVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~-svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
...++++|+|||.++++++|+++|++||.|. +|+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 3467899999999999999999999999999 99999997 8999999 99999999999999876654
No 248
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.7e-11 Score=94.31 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=59.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 45788999999999999999999999999999999987 6899999 99999999999999876644
No 249
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.7e-11 Score=97.21 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=60.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 345788999999999999999999999999999999996 8999999 999999999999998776543
No 250
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2e-11 Score=97.14 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=61.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 346789999999999999999999999999999999987 8999999 999999999999998766543
No 251
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.6e-11 Score=96.15 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=60.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++|+++|+++|++||.|++|+|++| +|.++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578899999999999999999999999999999999 9999999 999999999999998877544
No 252
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.9e-11 Score=96.28 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=57.8
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 345789999999999999999999999999999999996 8999999 9999999999999876
No 253
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.18 E-value=1.1e-11 Score=92.83 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=56.6
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
+++|+|||.++++++|+++|++||.|.+|++++|. +|+++|| ||.|.+.++|.+|+..+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 57889999999999999999999999999999987 7999999 999999999999998776
No 254
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.1e-11 Score=96.24 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=60.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|.+|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999999999987 7999999 999999999999998776543
No 255
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=97.90 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=56.0
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHh
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
..+++|+|||+++|+++|+++|+.| .|++|+|++|.+|+++|| ||+|.+.++|.+|+ ++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcC
Confidence 4678999999999999999999999 899999999999999999 99999999999998 444
No 256
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.18 E-value=3e-11 Score=97.88 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=60.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 81 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 345789999999999999999999999999999999996 8999999 999999999999998776543
No 257
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=103.94 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=59.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCC--CeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCG--TISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG--~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.++|+++|+++|++|| .|++|+|++|. +|+++|| ||+|.+.++|.+|+..+...
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 457899999999999999999999999 99999999996 9999999 99999999999999886644
No 258
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.17 E-value=3.9e-11 Score=99.53 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=61.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..+....
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~ 112 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 112 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 346789999999999999999999999999999999986 7899999 999999999999998877543
No 259
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=101.19 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=57.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCe----EEEEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTI----SSVKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I----~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
....+++|+|||+++|+++|+++|++||.| .+|+|++|.+|+++|| ||+|.+.++|.+|+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 445789999999999999999999999976 6999999999999999 9999999999999865
No 260
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.5e-11 Score=95.46 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=57.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 45678999999999999999999999999999999996 7999999 9999999999999874
No 261
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=96.55 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=60.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 45789999999999999999999999999999999987 6999999 999999999999998877544
No 262
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.17 E-value=2.6e-11 Score=98.66 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=59.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 35778999999999999999999999999999999986 8999999 99999999999999876543
No 263
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.16 E-value=3.9e-11 Score=92.98 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=59.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|+++ +|+++|| ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578899999999999999999999999999999985 8899999 999999999999998877544
No 264
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.16 E-value=2.3e-11 Score=101.67 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=35.6
Q ss_pred eEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccccccccccCCCCceEEeeCCCccccHHHHHHHHccCCCEEEEEE
Q 039806 56 GYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIRRADRIQEGSSFNNLYVKNLDDDMTEEILVEKFSEFGKITSLVI 135 (398)
Q Consensus 56 g~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~~~i 135 (398)
-++|++|++...|..|++.++|....|+.- +....+ .......++|||+|||.++|+++|+++|+.||.|.++.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 367888999999999999998876666432 222211 111225789999999999999999999999888888877
Q ss_pred eeCC
Q 039806 136 SKDA 139 (398)
Q Consensus 136 ~~d~ 139 (398)
++|.
T Consensus 80 ~~~~ 83 (135)
T 2lea_A 80 PRDR 83 (135)
T ss_dssp CCCS
T ss_pred EecC
Confidence 7664
No 265
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=92.91 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=56.3
Q ss_pred hhccccCCCccc------CHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEV------DEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~v------tee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
++++|+|||..+ ++++|+++|++||.|.+|+|. ..+|+++|| ||+|.+.++|.+|+..++...
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 578899999999 779999999999999999988 468999999 999999999999987765443
No 266
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.4e-11 Score=96.19 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=60.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +++++|| ||+|.+.++|.+|+..++...
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 45789999999999999999999999999999999987 8899999 999999999999998877543
No 267
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.9e-11 Score=99.25 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=58.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +++++|| ||+|.+.++|.+|+..+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 345789999999999999999999999999999999986 7999999 999999999999987655
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=3.9e-11 Score=96.97 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=61.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|.+|.++|| ||+|.+.++|.+|+..++...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 356789999999999999999999999999999999999999999 999999999999998877554
No 269
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.5e-11 Score=96.37 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=61.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|.+|+|+++. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 74 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 456889999999999999999999999999999999986 8999999 999999999999998766543
No 270
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.9e-11 Score=96.72 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=60.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788999999999999999999999999999999985 8999999 999999999999998776543
No 271
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.16 E-value=4e-11 Score=94.40 Aligned_cols=66 Identities=14% Similarity=0.265 Sum_probs=60.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEE--------EEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISS--------VKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s--------vki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|.+ |+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567889999999999999999999999999 9999996 8999999 999999999999998776543
No 272
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=4.2e-11 Score=95.54 Aligned_cols=66 Identities=15% Similarity=0.345 Sum_probs=60.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC--CCCccce-EEEecccHHHHHHHHHH-hcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD--RGISKGH-CMAIAQTKRERTSYLRI-MYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~--~g~skGf-fV~f~~~~ea~~A~l~~-q~~ 239 (398)
...++++|+|||.++++++|+++|++||.|++|+|+++. +|+++|| ||+|.+.++|.+|+..+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 82 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST 82 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC
Confidence 345789999999999999999999999999999999983 9999999 99999999999999888 443
No 273
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=4.3e-11 Score=97.13 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=57.4
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 345789999999999999999999999999999999996 7999999 9999999999999865
No 274
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.4e-11 Score=99.78 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=57.4
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCe-EEEEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTI-SSVKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I-~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...++++|+|||.++|+++|+++|++||.| .+|+|++|.+|+++|| ||+|.+.++|.+|+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 345788999999999999999999999999 9999999999999999 9999999999999654
No 275
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=102.76 Aligned_cols=64 Identities=9% Similarity=0.201 Sum_probs=59.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEE--EEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISS--VKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s--vki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.++|+++|+++|++||.|.+ |+|++|. +|++||| ||+|.+. +|.+|+..++..
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4567999999999999999999999999977 9999998 9999999 9999999 999999988754
No 276
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.7e-11 Score=95.93 Aligned_cols=66 Identities=27% Similarity=0.284 Sum_probs=60.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEE-EEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSV-KIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~sv-ki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+| +|++|. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 45788999999999999999999999999999 999994 9999999 999999999999998766543
No 277
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.15 E-value=2.5e-11 Score=90.42 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=52.7
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHH
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l 234 (398)
++|+|||.++++++|+++|++||.|.+|+++++. +|+++|| ||+|.+.++|.+|+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 6789999999999999999999999999999987 8999999 999999999988864
No 278
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.15 E-value=5.3e-11 Score=93.74 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=55.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++++++|+|||+++|+++|+++|++||.|++|++++ +||| ||+|.+.++|.+|+..++..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999984 4788 99999999999999887643
No 279
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.15 E-value=1.5e-11 Score=103.24 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSY 233 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~ 233 (398)
...++++|+|||+++|+++|+++|++|| |++|+|++|++|+++|| ||+|++.++|.+|+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 4457899999999999999999999999 77999999999999999 99999999999998
No 280
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=6.8e-11 Score=93.75 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=59.0
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|..+ ++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34578899999999999999999999999999999998755 8999 999999999999998776543
No 281
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.14 E-value=4e-11 Score=98.53 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=61.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 100 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP 100 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCE
Confidence 3457899999999999999999999999999999999999999999 999999999999998877654
No 282
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.14 E-value=3.3e-11 Score=101.03 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=60.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 345789999999999999999999999999999999987 7899999 999999999999998776543
No 283
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.14 E-value=5.2e-11 Score=95.61 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=60.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 92 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 92 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 345679999999999999999999999999999999986 8999999 999999999999998776543
No 284
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.14 E-value=2.2e-11 Score=90.66 Aligned_cols=58 Identities=10% Similarity=0.304 Sum_probs=54.0
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
+++++|||.++++++|+++|++||.|.+|++++|. +|+++|| ||+|.+.++|.+|+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 36789999999999999999999999999999986 7999999 9999999999999863
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.14 E-value=5.2e-11 Score=97.75 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=58.6
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+||+.++++++|+++|++||.|++|+|++|. +|.++|| ||+|.+.++|.+|+ +++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 45789999999999999999999999999999999985 8999999 99999999999998 65543
No 286
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.14 E-value=2.2e-11 Score=101.87 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=58.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCC---eEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGT---ISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~---I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
...+++|+|||+++|+++|+++|++||. |++|+|++|..|+++|| ||+|++.++|.+|+. +..
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 3567899999999999999999999999 89999999999999999 999999999999987 544
No 287
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.13 E-value=3.7e-11 Score=99.07 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=55.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeE--EEEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTIS--SVKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~--svki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
...++++|+|||+++|+++|+++|++| .|+ +|+|++|++|+++|| ||+|.+.++|.+|+..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 345678999999999999999999999 677 999999999999999 9999999999999864
No 288
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.13 E-value=2.7e-11 Score=95.91 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=56.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l 234 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++|.+|+++|| ||+|.+.++|.+|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999 999999999999986
No 289
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=3.7e-11 Score=94.35 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=58.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCC--C--Cccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDR--G--ISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~--g--~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|.. | +++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 457889999999999999999999999999999998763 4 88999 999999999999998776543
No 290
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.13 E-value=5.6e-11 Score=95.35 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=60.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|.+|+|+++. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678999999999999999999999999999999986 8999999 999999999999998776543
No 291
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=6e-11 Score=94.13 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=57.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||.++++++|+++|++|| |++|+|++|. +|+++|| ||+|.+.++|.+|+ +++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 457889999999999999999999997 9999999997 7999999 99999999999998 6654
No 292
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=95.50 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=56.9
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC--CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD--RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~--~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
....++++|+||+.++++++|+++|++|| |++|+|++|. +|+++|| ||+|.+.++|.+|+ .++..
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 34567899999999999999999999999 9999999986 8999999 99999999999999 66544
No 293
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=5.5e-11 Score=94.53 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-C-CCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-R-GISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~-g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++|| |++|+|++|. + |+++|| ||+|.+.++|.+|+ .++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 457889999999999999999999999 9999999987 4 899999 99999999999999 76644
No 294
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.12 E-value=5.2e-11 Score=90.86 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=53.6
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++|+||+..+||++|+++|.+||+|.++++.. +||| ||+|.+.+||.+|+..+....
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCV 67 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCE
Confidence 4577899999999999999999999999999974 7999 999999999999999887543
No 295
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.7e-11 Score=93.77 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++|..+ ++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 34578999999999999999999999999999999998543 7899 999999999999998777554
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=2.9e-11 Score=98.63 Aligned_cols=63 Identities=10% Similarity=0.194 Sum_probs=57.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCC---eEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGT---ISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~---I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||.++|+++|+++|+.||. |++|+|++|.+|+++|| ||+|.+.++|.+|+. ++.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 3467889999999999999999999999 89999999999999999 999999999999987 543
No 297
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=5.3e-11 Score=96.96 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=53.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||+++||++|+++|++||.|++|+|+++ ||| ||+|++.++|.+|+..+..
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 4578999999999999999999999999999999965 788 9999999999999987653
No 298
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=7.1e-11 Score=93.55 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=53.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHh
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
..++++|+|||+++++++|+++|++||.|++|+|+++ ||| ||+|++.++|.+|+..++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999864 788 999999999999988765
No 299
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.11 E-value=7.7e-11 Score=97.03 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=60.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++|+++|+++|++||.|++|+|++|. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 35679999999999999999999999999999999997 9999999 999999999999998776543
No 300
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.10 E-value=3.1e-11 Score=94.13 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=59.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+++++++. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 35789999999999999999999999999999988876 8899999 999999999999998776543
No 301
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=5.2e-11 Score=94.44 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=53.7
Q ss_pred hhhhccccCCCc-ccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNIND-EVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~-~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||+ ++|+++|+++|++||.|++|+|+++ +|| ||+|++.++|.+|+..++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcC
Confidence 467899999999 9999999999999999999999865 577 9999999999999988764
No 302
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.09 E-value=1.1e-10 Score=99.89 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=61.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++|+++|+++|++||.|++|+|++|. +++++|| ||+|.+.++|.+|+..++...
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 356789999999999999999999999999999999997 7999999 999999999999998776543
No 303
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=7e-11 Score=94.89 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=59.4
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+||+.++++++|+++|++||.|++|+|++|. +.++|| ||+|.+.++|.+|+..++...
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3456789999999999999999999999999999999885 458999 999999999999998776543
No 304
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.09 E-value=7e-11 Score=107.79 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=59.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCC--CeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCG--TISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG--~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++|+++|+++|++|| .|++|+|++|. +|++||| ||+|.+.++|.+|+..+....
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 456799999999999999999999999 99999999997 9999999 999999999999988766443
No 305
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.09 E-value=6.3e-11 Score=90.90 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=57.9
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCC-ccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGI-SKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~-skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.++++|+|||.++++++|+++|++||.|.+|+|++|. ++. ++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 4678899999999999999999999999999999887 344 8999 999999999999998776544
No 306
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=1.1e-10 Score=92.89 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=53.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+||++++++++|+++|++||.|++|+|+++ ||| ||+|.+.++|.+|+..++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 4578999999999999999999999999999999853 788 9999999999999987754
No 307
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.08 E-value=2.7e-11 Score=93.57 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=57.3
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.+ |.+|+..++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~ 66 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD 66 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE
Confidence 467889999999999999999999999999999987 7999999 99999999 999988766543
No 308
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.08 E-value=9.1e-11 Score=90.69 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=48.5
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHH
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERT 231 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~ 231 (398)
.....+++|+|||.++||++|+++|++||.|++|+|+++ +||| ||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH
Confidence 345678899999999999999999999999999999975 7999 999999999884
No 309
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=9.7e-11 Score=90.65 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=58.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++| .|.+|+|++|.+|+++|| ||+|.+.++|.+|+. ++..
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 35678899999999999999999999 999999999999999999 999999999999987 5543
No 310
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=8.4e-11 Score=94.87 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=60.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeE--------EEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTIS--------SVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~--------svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|. .|+|++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 457899999999999999999999999999 69999994 8999999 999999999999998776544
No 311
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=3.9e-11 Score=94.22 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=58.2
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
.++++|+|||.++++++|+++|++||.|++++++.+. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4678899999999999999999999999998888775 8999999 99999999999999877654
No 312
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=97.53 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=59.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
..++++|+|||.++++++|+++|++||.|++|+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999985 8999999 99999999999999876654
No 313
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=87.25 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=62.2
Q ss_pred CcceEEEcCCCC----CCcH----HHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceE
Q 039806 13 GIGNAFVKNLAS----TIDN----LKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERME 84 (398)
Q Consensus 13 ~~~~lfV~nLp~----~vte----~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~ 84 (398)
..+||+|.-++. +.-. .+|.+.|+.||+|.+++++.|. +||+|++.++|.+||+ |||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 456888888762 3323 5789999999999999998865 9999999999999998 9999999999
Q ss_pred eeeeccccc
Q 039806 85 LYVGPFIRR 93 (398)
Q Consensus 85 i~V~~~~~~ 93 (398)
|+|....+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999987643
No 314
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.06 E-value=4.6e-11 Score=95.64 Aligned_cols=60 Identities=8% Similarity=0.169 Sum_probs=56.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCC---eEEEEEeeCCCCCccce-EEEecccHHHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGT---ISSVKIMRTDRGISKGH-CMAIAQTKRERTSYL 234 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~---I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l 234 (398)
...+++|+|||.++|+++|+++|+.||. |.+|+|++|..|+++|| ||+|.+.++|.+|+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 4567889999999999999999999998 99999999999999999 999999999999987
No 315
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.06 E-value=9.5e-11 Score=93.44 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=58.6
Q ss_pred hhhhccccCCCccc------CHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEV------DEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~v------tee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||..+ ++++|+++|++||.|.+|+|+ ..+|+++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 35688999999999 789999999999999999998 468999999 999999999999998876554
No 316
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.5e-10 Score=90.74 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=57.2
Q ss_pred hhhccccCCCcccCHHHHH----HHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERAELYKNINDEVDEIELK----QYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~----~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.++++|+|||.++++++|+ ++|++||.|++|+|++|..+ +|| ||+|.+.++|.+|+..++...
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYK 76 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899999999999999 99999999999999998866 778 999999999999999887654
No 317
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=9.3e-11 Score=93.91 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=57.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCC-eEEEEEe-eCC-CCCccce-EEEecccHHHHHHHHHHh
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGT-ISSVKIM-RTD-RGISKGH-CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~-I~svki~-~d~-~g~skGf-fV~f~~~~ea~~A~l~~q 237 (398)
..++++|+|||.++++++|+++|++||. |++|+|+ +|. +|+++|| ||+|.+.++|.+|+..++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4577899999999999999999999998 9999998 665 7899999 999999999999987764
No 318
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.05 E-value=4.1e-10 Score=112.29 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=59.4
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
++|+|+||+..+|+++|+++|++||.|++|+|+.|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 578999999999999999999999999999999986 8999999 999999999999998876544
No 319
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8.2e-11 Score=95.27 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=56.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-C---CCccce-EEEecccHHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-R---GISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~---g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
...++++|+|||.++++++|+++|++||.|. +.++.+. + |+++|| ||+|.+.++|.+|+..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3457899999999999999999999999999 8888776 4 799999 99999999999999876
No 320
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.4e-10 Score=93.39 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=58.4
Q ss_pred hhhhccccCCCcccCHHHHH---HHhhcCCCeEEEEEeeCC-CC---Cccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELK---QYFSQCGTISSVKIMRTD-RG---ISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~---~~F~~fG~I~svki~~d~-~g---~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+ ++|++||.|++|+|++|. ++ +++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 35678899999999999999 999999999999999886 33 56699 999999999999999877654
No 321
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.3e-10 Score=93.70 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=54.1
Q ss_pred hhhhhccccCCCcc-cCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 174 RKERAELYKNINDE-VDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 174 ~~~~~~~v~nL~~~-vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
...++++|+||+++ +++++|+++|++||.|++|+|++ +||| ||+|++.++|.+|+..++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhcc
Confidence 34678999999998 99999999999999999999983 5888 9999999999999987764
No 322
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=3.6e-10 Score=90.51 Aligned_cols=64 Identities=6% Similarity=0.103 Sum_probs=56.8
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++|+++|+++|++||.|++|+|..+ +.++|| ||+|.+.++|.+|+..++...
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999999999999999999999999999654 568899 999999999999998877543
No 323
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.01 E-value=5.7e-10 Score=98.99 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
...++++|+|||.++++++|+++|++||.|.+|+|.++.+|+++|| ||+|.+.++|.+|+...
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 3457899999999999999999999999999999999999999999 99999999999998543
No 324
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.01 E-value=4.2e-10 Score=97.20 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=60.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||..+++++|+++|++||.|.+|+|+++. +|.++|| ||+|.+.++|.+|+..++...
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 35679999999999999999999999999999999996 9999999 999999999999998877544
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.99 E-value=2.6e-10 Score=99.76 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=61.2
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|++||.|++|+|++|.+|.++|| ||+|.+.++|.+|+..++...
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~ 153 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP 153 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3457899999999999999999999999999999999999999999 999999999999998776543
No 326
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.99 E-value=5.5e-10 Score=90.29 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=57.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+|+|++| +.++|| ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~ 71 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFN 71 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999999999999999999999999999965 456888 999999999999998877554
No 327
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=7.1e-10 Score=90.09 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=68.0
Q ss_pred cccCCCcceEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecC-HHHHHHHHHHhc--CCeecce
Q 039806 8 EARLSGIGNAFVKNLAST-IDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYST-PESALDAIEKLQ--GATVERM 83 (398)
Q Consensus 8 ~~~~~~~~~lfV~nLp~~-vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~-~e~A~~Ai~~ln--g~~l~gk 83 (398)
+..-...+-|+|+||+.+ ++.++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|++++| +..|+|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 344455678999999999 99999999999999999999988662 59999999 899999999995 6788998
Q ss_pred Eeeeeccc
Q 039806 84 ELYVGPFI 91 (398)
Q Consensus 84 ~i~V~~~~ 91 (398)
.+.++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887654
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.4e-10 Score=93.12 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=46.0
Q ss_pred hhccccCC----CcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecc
Q 039806 177 RAELYKNI----NDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQ 225 (398)
Q Consensus 177 ~~~~v~nL----~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~ 225 (398)
..++|+|| ++.++|++|+++|+.||.|.+|+++.|+ +|+++|| ||.|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 46788999 9999999999999999999999999999 9999999 999996
No 329
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=2.1e-10 Score=94.25 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=54.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEE-EeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVK-IMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svk-i~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
...+++|+|||.++|+++|+++|+.||.|.++. +..+.+|+++|| ||+|.+.++|.+|+. ++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 346789999999999999999999999999954 455569999999 999999999999987 443
No 330
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=4.9e-10 Score=89.70 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=54.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...+++|+|||.++++++|+++|++||.|++|+|++| || ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK 74 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCC
Confidence 3567899999999999999999999999999999976 77 999999999999998876544
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.2e-10 Score=92.39 Aligned_cols=63 Identities=11% Similarity=0.214 Sum_probs=55.0
Q ss_pred hhhhhhccc--cCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELY--KNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v--~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+.+.++| +||+.+++|++|+++|++||.|++|.|+. .||| ||+|++.++|.+|+.+++...
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345677999 66999999999999999999999999863 3788 999999999999999888764
No 332
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.5e-10 Score=89.26 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.| +|+++.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 77 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 346789999999999999999999999987 6777789999999 999999999999998776543
No 333
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-10 Score=88.68 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=54.2
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+++|+|||.++|+++|+++|++||.|++|+|+++ ++|| ||+|.+.++|.+|+..++...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 5788999999999999999999999999999977 7888 999999999999998877543
No 334
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-10 Score=92.80 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=56.5
Q ss_pred hhhhhccccCCCcccCHHHHH----HHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELK----QYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~----~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||++.+++++|+ ++|++||.|++|.+. .+|+++|| ||+|.+.++|.+|+..++...
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 346789999999999999876 699999999999885 46889999 999999999999998777543
No 335
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=7e-10 Score=86.84 Aligned_cols=62 Identities=6% Similarity=0.116 Sum_probs=55.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|++.++ +|| ||+|.+.++|.+|+..++...
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCE
Confidence 34578999999999999999999999999999999854 677 999999999999998877554
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.51 E-value=6.5e-11 Score=96.07 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=59.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEE--------EEEeeCC-CCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISS--------VKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~s--------vki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
...++++|+|||.++++++|+++|++||.|.+ |+|++|. +|+++|| ||+|.+.++|.+|+..++..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 45678999999999999999999999999999 9999985 8999999 99999999999998766543
No 337
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.9e-10 Score=87.39 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=49.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHH
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTS 232 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A 232 (398)
.+++++|+|||.++++++|+++|++||.|++|+|+++ ++|| ||+|.+.++|.+|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH
Confidence 4578999999999999999999999999999999865 7888 9999999999754
No 338
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=8.3e-10 Score=87.05 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=54.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++++++|+++|++||.|++|++. +++|| ||+|.+.++|.+|+..++...
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 35789999999999999999999999999999998 56888 999999999999998776443
No 339
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.94 E-value=6.2e-10 Score=90.24 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=54.2
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
....+++|+||+.++++++|+++|++||.|++|+|+.| || ||+|++.++|.+|+..++....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34578999999999999999999999999999999866 78 9999999999999988876543
No 340
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.2e-09 Score=83.74 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCcceEEEcCCCCC-----C-cH---HHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 12 SGIGNAFVKNLAST-----I-DN---LKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 12 ~~~~~lfV~nLp~~-----v-te---~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
...+||+|.-++.+ + ++ .+|.+.|+.||+|..+++..|. +||+|.+.++|.+||+ |||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 34679999988754 2 21 4688999999999999999875 9999999999999998 99999999
Q ss_pred eEeeeecc
Q 039806 83 MELYVGPF 90 (398)
Q Consensus 83 k~i~V~~~ 90 (398)
|.|+|.+-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999763
No 341
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=7e-10 Score=89.36 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=55.3
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+..++++|+|||.++++++|+++|++||.|++|+|.+ ++|| ||+|.+.++|.+|+..++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~ 70 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSK 70 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3457899999999999999999999999999999973 5777 999999999999998887654
No 342
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=9.8e-10 Score=86.34 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=54.8
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+|.++ +|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMP 75 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899999999999999999999999999999844 788 999999999999998877544
No 343
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=84.32 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=53.3
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
...++++|+|||.++++++|+++|++||.|++|+|+ +|| ||+|.+.++|.+|+..++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCC
Confidence 345788999999999999999999999999999998 678 99999999999999877654
No 344
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1e-09 Score=87.84 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=56.1
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+||+.++++++|+++|++||.|.+|+|+++ +|| ||+|.+.++|.+|+..++...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 344678999999999999999999999999999999966 788 999999999999998876543
No 345
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=1.8e-09 Score=97.70 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=60.9
Q ss_pred CcHHHHHHHHhccCCeeEEEEEEcC-----CCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecccc
Q 039806 26 IDNLKLHQIFSKFGDIQSSKVVVSQ-----EGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPFIR 92 (398)
Q Consensus 26 vte~~L~~~F~~~G~I~~vki~~d~-----~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~~~ 92 (398)
-.+++|++.|++||.|.+|+|.++. ++.++|++||+|.+.++|.+|++.|||..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678899999999999999999665 348999999999999999999999999999999999998753
No 346
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.91 E-value=6.1e-10 Score=89.69 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=55.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCC-CeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCG-TISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG-~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++|+|||.++++++|+++|++|| .|++|+|.. +.++|| ||+|.+.++|.+|+..+....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 346788999999999999999999999 999999963 358899 999999999999998776543
No 347
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=82.90 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=52.8
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHH
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~ 236 (398)
...++++|+|||.++++++|+++|++||.|.+|++++ ++|| ||+|.+.++|.+|+..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHh
Confidence 3457889999999999999999999999999999995 4788 99999999999999866
No 348
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.90 E-value=4.1e-10 Score=88.03 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=57.9
Q ss_pred hhhhhccccCCCcccCHHHHH----HHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELK----QYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~----~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+ ++|++||.|.+|+|.+ +|+++|| ||+|.+.++|.+|+..++...
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 456789999999999999999 9999999999999973 6788899 999999999999998877544
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.90 E-value=2.4e-09 Score=85.33 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=56.9
Q ss_pred hhhhhccccCCCc-----ccCHHHHHHHhhcCCCeEEEEEeeCC--CCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 174 RKERAELYKNIND-----EVDEIELKQYFSQCGTISSVKIMRTD--RGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 174 ~~~~~~~v~nL~~-----~vtee~L~~~F~~fG~I~svki~~d~--~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
..+++++++||-. +-++++|+++|++||.|++|+|++|+ +++++|| ||.|.+.++|.+|+..++....
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3456788888863 33789999999999999999999986 3689999 9999999999999998886543
No 350
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.88 E-value=1.1e-10 Score=92.13 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=55.7
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|.+ ++++|. +|+++|| ||+|.+.++|.+|+. ++...
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~ 81 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK 81 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE
Confidence 4568899999999999999999999999988 666664 8999999 999999999999996 65433
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.88 E-value=2.1e-09 Score=92.02 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=54.3
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
.++|+||++.+|+++|+++|++||.|++|+|..+ .++|| ||+|.+.++|.+|+..++....
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567999999999999999999999999999754 35788 9999999999999999887665
No 352
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.87 E-value=1.8e-09 Score=86.46 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=55.0
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+||+.++++++|+++|++||.|++|+|+ +|| ||+|.+.++|.+|+..++...
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKS 89 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 4456789999999999999999999999999999998 788 999999999999998877544
No 353
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.86 E-value=3.4e-09 Score=83.08 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=54.3
Q ss_pred hhhhhhccccCCCc-ccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNIND-EVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~-~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+||+. ++++++|+++|++||.|.+|+|. +|| ||+|.+.++|.+|+..++...
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 44577899999998 99999999999999999999993 788 999999999999998876543
No 354
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.4e-09 Score=83.64 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred hhhhhhccccCCCc-ccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNIND-EVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~-~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+|||. ++++++|+++|++||.|.+|+|. +|| ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCe
Confidence 44567899999998 99999999999999999999995 788 999999999999998876543
No 355
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.85 E-value=2.3e-09 Score=84.85 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=52.9
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.++|+++|+++|++||.|++|+|+ +|| ||+|.+.++|.+|+..++...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~ 69 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD 69 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCc
Confidence 45788999999999999999999999999999997 446 999999999999998877554
No 356
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.84 E-value=8.8e-10 Score=86.00 Aligned_cols=64 Identities=27% Similarity=0.286 Sum_probs=56.0
Q ss_pred hhhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 173 MRKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
....++++|+|||.++++++|+++|++||.|..+ +.+|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 77 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 77 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999999988776 458899999 999999999999998777543
No 357
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.84 E-value=3.1e-09 Score=85.19 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=53.3
Q ss_pred hhhhccccCCCcc-cCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDE-VDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~-vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+||+.+ +++++|+++|++||.|++|+| ++|| ||+|.+.++|.+|+..++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~ 86 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRV 86 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3478999999999 999999999999999999999 5788 999999999999998877544
No 358
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=83.91 Aligned_cols=62 Identities=6% Similarity=0.115 Sum_probs=54.4
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|. ++++. ++++|| ||+|.+.++|.+|+..++...
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLR 80 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 356889999999999999999999999997 77774 478899 999999999999998877544
No 359
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=3.2e-09 Score=81.81 Aligned_cols=60 Identities=8% Similarity=0.201 Sum_probs=53.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++|+++|+++|++||.|++|+|+++ | ||+|.+.++|.+|+..++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKE 67 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCE
Confidence 34678899999999999999999999999999999843 5 999999999999998877543
No 360
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.83 E-value=5.1e-09 Score=86.37 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=53.2
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce--EEEecccHHHHHHHHHHhccccC
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH--CMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf--fV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
++|+||++.+|+++|+++|++||.|.+|+|+.+ ++|| ||+|.+.++|.+|+..++.....
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 446999999999999999999999999999864 3677 99999999999999999876653
No 361
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.7e-09 Score=87.33 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=55.0
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCe----EEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTI----SSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I----~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++|+++|+++|++||.| ..+++. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 45789999999999999999999999999 455554 8899999 999999999999998776543
No 362
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.8e-09 Score=83.27 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=56.1
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++++++|+++|+.|+ +|++++|. +|+++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 78 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 3467899999999999999999999874 68888886 8999999 999999999999998877543
No 363
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.81 E-value=4e-09 Score=80.52 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=53.7
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcC----C-------CeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQC----G-------TISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYA 239 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~f----G-------~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~ 239 (398)
+..++++|+|||.++++++|+++|++| | .|.+|++.++ +|| ||+|.+.++|.+|+ .++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 456889999999999999999999999 8 9999999854 788 99999999999998 76644
No 364
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=4.2e-09 Score=81.50 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=53.2
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|||.++++++|+++|++||.|++|+|++ +| ||+|.+.++|.+|+..++...
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCe
Confidence 3457889999999999999999999999999999983 36 999999999999998877554
No 365
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.79 E-value=3.1e-09 Score=81.59 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=54.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++| .|++|+|. +++|| ||+|.+.++|.+|+..++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYS 64 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 45788999999999999999999999 99999994 78899 999999999999999887654
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.78 E-value=3.4e-09 Score=84.25 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=45.8
Q ss_pred CHHHHHHHh-hcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 189 DEIELKQYF-SQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 189 tee~L~~~F-~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
.+++|+++| ++||.|++|+|+++.+|+++|| ||.|.+.++|.+|+..++...
T Consensus 39 ~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 39 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 346677777 9999999999999988999999 999999999999998887654
No 367
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=9.5e-09 Score=80.62 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=53.5
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcC--CCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQC--GTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~f--G~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
..++++|+||+.++++++|+++|++| |.|.+|++. +|| ||+|.+.++|.+|+..++....
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 45788999999999999999999999 999999985 668 9999999999999988876543
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=1.4e-08 Score=83.21 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=51.4
Q ss_pred ccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce--EEEecccHHHHHHHHHHhcccc
Q 039806 179 ELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH--CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 179 ~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf--fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
++|+||++.+++++|+++|++||.|++|+|+.. .|| ||+|.+.++|.+|+..++....
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 346999999999999999999999999999753 275 9999999999999999887654
No 369
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.75 E-value=2e-09 Score=90.55 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=56.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEE------EEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSV------KIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~sv------ki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+||+.++|+++|+++|++||.|.+| .|....+|+++|| ||.|.+.++|.+|+..++...
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 345679999999999999999999999999875 1222258999999 999999999999998887654
No 370
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.6e-09 Score=82.03 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=51.2
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCC-eEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGT-ISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~-I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||.++|+++|+++|++||. |..+.+. ++|| ||+|.+.++|.+|+..++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccC
Confidence 4568899999999999999999999999 6666663 5888 9999999999999988775
No 371
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.9e-09 Score=81.69 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=54.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEE-EeeCC-CCCccceEEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVK-IMRTD-RGISKGHCMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svk-i~~d~-~g~skGffV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|||.++++++|+++|++||.|++|+ |++|. +|. | ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~--a-fV~f~~~~~a~~Ai~~l~g~~ 78 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV--V-NVTYSSKDQARQALDKLNGFQ 78 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE--E-EEEESSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE--E-EEEECCHHHHHHHHHHhCCCE
Confidence 356789999999999999999999999999995 88775 333 5 899999999999998777654
No 372
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-08 Score=78.68 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=49.3
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce-EEEecccHHHHHHHHHHhc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH-CMAIAQTKRERTSYLRIMY 238 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf-fV~f~~~~ea~~A~l~~q~ 238 (398)
..++++|+|||.++++++|+++|++||.|.+| +.|. +|+ | ||+|.+.++|.+|+. +..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCC
Confidence 34678999999999999999999999999998 4443 555 6 999999999999987 543
No 373
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.2e-08 Score=79.76 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=52.1
Q ss_pred hhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..++++|+|| ++|+++|+++|++||.|.+|+|. +++|| ||+|.+.++|.+|+..++...
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 4567889996 89999999999999999999995 67888 999999999999998876554
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.71 E-value=1.2e-08 Score=81.27 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=53.3
Q ss_pred hhhhccccCC--Cccc--------CHHHHHHHhhcCCCeEEEEEeeCCC---CCccce-EEEecccHHHHHHHHHHhccc
Q 039806 175 KERAELYKNI--NDEV--------DEIELKQYFSQCGTISSVKIMRTDR---GISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 175 ~~~~~~v~nL--~~~v--------tee~L~~~F~~fG~I~svki~~d~~---g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+++.++++|+ +.++ .+++|+++|++||.|++|+|+++.. ++++|| ||.|++.++|.+|+..++...
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456666776 2232 3479999999999999999998874 368999 999999999999999888654
No 375
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.69 E-value=1.6e-08 Score=92.19 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=57.1
Q ss_pred hhhhhhccccCCCccc---------CHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 173 MRKERAELYKNINDEV---------DEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 173 ~~~~~~~~v~nL~~~v---------tee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
....++|+|+||+.++ +|++|+++|++||.|++|+|+. ++|| ||.|.+.++|.+|+.+++....
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4457889999999998 7999999999999999999984 5899 9999999999999988886544
No 376
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.64 E-value=1.7e-08 Score=82.56 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=52.9
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
...++++|+|| ++|+++|+++|++||.|.+|+|. +++|| ||+|.+.++|.+|+..++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~ 97 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ 97 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678999996 69999999999999999999996 67889 999999999999998877554
No 377
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4.6e-08 Score=77.04 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=43.2
Q ss_pred CcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHH
Q 039806 185 NDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLR 235 (398)
Q Consensus 185 ~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~ 235 (398)
+.++++++|+++|++||.|++|+|+ ++++|| ||+|.+.++|.+|+..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh
Confidence 3578999999999999999999998 478999 9999999999999876
No 378
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.63 E-value=3.9e-08 Score=79.92 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=55.7
Q ss_pred hhhhhccccCCCc--cc---CHHHHHHHhhcCCCeEEEEEeeCC-----CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNIND--EV---DEIELKQYFSQCGTISSVKIMRTD-----RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~--~v---tee~L~~~F~~fG~I~svki~~d~-----~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+++++++|+-. ++ .+++|+++|++||+|++|+|++|. +++++|| ||.|.+.++|.+|+..++...
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 4678888888842 22 368999999999999999999875 3568899 999999999999999887654
No 379
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.57 E-value=2.9e-08 Score=95.28 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=55.6
Q ss_pred hhhhhhccccC--CCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhcccc
Q 039806 173 MRKERAELYKN--INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 173 ~~~~~~~~v~n--L~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q~ 241 (398)
..++++++|+| |+..+||++|+++|++||+|++|++.+ +||| ||+|.+.+||.+|+.+++....
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34567889988 688999999999999999999988753 5789 9999999999999999887665
No 380
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=8.8e-08 Score=73.75 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=47.9
Q ss_pred hhh-ccccCCCcccCHHH----HHHHhhcC-CCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 176 ERA-ELYKNINDEVDEIE----LKQYFSQC-GTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 176 ~~~-~~v~nL~~~vtee~----L~~~F~~f-G~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+ ++|.||++++++++ |+++|++| |+|.+| +| || ||.|.+.++|.+|+.+++...
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 344 66899999999988 55899999 599998 33 88 999999999999999988755
No 381
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.3e-07 Score=76.01 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=51.3
Q ss_pred hhhhhccccCCCccc-----------CHHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 174 RKERAELYKNINDEV-----------DEIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 174 ~~~~~~~v~nL~~~v-----------tee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
..+++++++||-... ++++|+++|++||.|++|.| .|. .++|| ||+|.+.++|.+|+..++...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 346778889984332 26899999999999999966 454 37999 999999999999998877543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.9e-06 Score=65.65 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhcc-----CCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEee
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKF-----GDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELY 86 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~-----G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~ 86 (398)
...++|-|-|||..++++.|+.+.+.+ |.|..+.+..|. +=|+|+|++..+|-+|.-.|||..|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346789999999999999999999999 999988888776 3499999999999999999999999999999
Q ss_pred eecc
Q 039806 87 VGPF 90 (398)
Q Consensus 87 V~~~ 90 (398)
++-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9654
No 383
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.21 E-value=1.1e-06 Score=70.70 Aligned_cols=48 Identities=4% Similarity=0.054 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCCeEEEEEeeCCCCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 190 EIELKQYFSQCGTISSVKIMRTDRGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 190 ee~L~~~F~~fG~I~svki~~d~~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+++|+++|++||.|++|+|.++. ++|| ||.|.+.++|.+|+..++...
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 47899999999999999997653 5888 999999999999999888654
No 384
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=1.8e-06 Score=69.95 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=49.2
Q ss_pred hhhccccCCCcc-cCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecc-cHHHHHHHHHH
Q 039806 176 ERAELYKNINDE-VDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQ-TKRERTSYLRI 236 (398)
Q Consensus 176 ~~~~~v~nL~~~-vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~-~~ea~~A~l~~ 236 (398)
...++|+||+.+ +++++|+++|++||.|.+|.+.++.+ .| ||.|.+ ..+|..|..++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tg-fVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EG-IILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EE-EEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EE-EEEECCChHHHHHHHHHh
Confidence 456778999999 99999999999999999999987653 46 899999 68888888765
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.8e-05 Score=61.32 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhc-----cCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEe
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSK-----FGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMEL 85 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~-----~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i 85 (398)
.+...+|.|.|||.+++++.|.-+|+. =|.|.+++... +-|+|.|.+.+.|++.|++ ..+.|++..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 345578999999999999999999977 25788887743 4599999999999999983 3778899999
Q ss_pred eeecccccccccccCCCCceEEeeCCCcccc
Q 039806 86 YVGPFIRRADRIQEGSSFNNLYVKNLDDDMT 116 (398)
Q Consensus 86 ~V~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 116 (398)
.|.+...+ ...++++.+|++.++
T Consensus 77 sV~P~~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC--------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC--------CcceEeeecCCCCCC
Confidence 99876554 356899999998775
No 386
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.70 E-value=3.7e-05 Score=69.06 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=46.9
Q ss_pred ccCHHHHHHHhhcCCCeEEEEEeeCC-----CCCccce-EEEecccHHHHHHHHHHhccc
Q 039806 187 EVDEIELKQYFSQCGTISSVKIMRTD-----RGISKGH-CMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 187 ~vtee~L~~~F~~fG~I~svki~~d~-----~g~skGf-fV~f~~~~ea~~A~l~~q~~q 240 (398)
+-.+++|++.|++||.|.+|+|+++. +++++|| ||+|.+.++|.+|+..+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 34568999999999999999998654 4489999 999999999999999988654
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00023 Score=55.38 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=63.2
Q ss_pred CcceEEEcCCCCCC-c----HHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeee
Q 039806 13 GIGNAFVKNLASTI-D----NLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYV 87 (398)
Q Consensus 13 ~~~~lfV~nLp~~v-t----e~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V 87 (398)
.-.+|+|.||+.+| + .+.++++|..|+++.+....+. =+-..|.|.+.++|.+|-..|++..+.|++++|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 34689999999877 2 2567899999999988877763 235789999999999999999999999999999
Q ss_pred ecccc
Q 039806 88 GPFIR 92 (398)
Q Consensus 88 ~~~~~ 92 (398)
-.+..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88763
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.42 E-value=0.00061 Score=52.04 Aligned_cols=68 Identities=7% Similarity=0.179 Sum_probs=56.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC-C-C-CceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ-E-G-KSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~-~-g-~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
.+|-|++||++.|++++.+.++.+..+.......-+ + + ..-.-|||.|.+.|++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999999887766665544 2 2 233569999999999999999999998754
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.41 E-value=0.00064 Score=52.06 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=46.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
.+-++| ++|+++...||.++|+.||.| .|+.+.|- -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 445666 999999999999999999965 47777664 59999999999999999764
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00027 Score=55.33 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred hhhhhccccCCCcccCHHHHHHHhhcC-----CCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhcccc
Q 039806 174 RKERAELYKNINDEVDEIELKQYFSQC-----GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQ 241 (398)
Q Consensus 174 ~~~~~~~v~nL~~~vtee~L~~~F~~f-----G~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q~ 241 (398)
+..+++-+-|||+.++++.++.+.+++ |.|+.|.+..|.. |-+|+|.+...|.+|.|++.....
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeee
Confidence 347888889999999999999999999 9999999997754 449999999999999999887653
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.0025 Score=50.94 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=58.8
Q ss_pred CCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecc-eEeeeec
Q 039806 11 LSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVER-MELYVGP 89 (398)
Q Consensus 11 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~g-k~i~V~~ 89 (398)
....+-|.|-+.|.+. ...+.+.|++||+|++.... . ...+-.|.|.+..+|++||. .||+.|+| --|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~---~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--N---TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--S---SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--C---CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 3456789999999986 55688899999999988761 1 23489999999999999998 59999985 5666666
Q ss_pred cc
Q 039806 90 FI 91 (398)
Q Consensus 90 ~~ 91 (398)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.94 E-value=0.00094 Score=54.15 Aligned_cols=79 Identities=25% Similarity=0.378 Sum_probs=56.9
Q ss_pred CCcceEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEEcC-------------CC-CceeEEEEEecCHHHHHHHHHHhc
Q 039806 12 SGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSS-KVVVSQ-------------EG-KSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 12 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~v-ki~~d~-------------~g-~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
.+...|.|-+.|++.+. .+.+.|++||.|++- .+..+. -+ ....+-.|.|++..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 45667999999887766 577899999999762 111100 00 123467899999999999998 59
Q ss_pred CCeecceEeeeecccc
Q 039806 77 GATVERMELYVGPFIR 92 (398)
Q Consensus 77 g~~l~gk~i~V~~~~~ 92 (398)
|+.|+|.-|-|.+..+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999999888877653
No 393
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00096 Score=50.71 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhccc
Q 039806 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q 240 (398)
.+|.+.|++||+|++++|..|. + ||+|.+.++|.+|+. +...+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~-----~-fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK-----M-WVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS-----E-EEEESSHHHHHHGGG-GTTCE
T ss_pred HHHHHHHHhCCCeEEEEEecCC-----E-EEEECChHHHHHHHh-cCCeE
Confidence 6799999999999999999763 4 899999999988885 55443
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.78 E-value=0.0025 Score=48.91 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 16 NAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
-++| ++|+++...||.++|+.||.| .|+.+.|- -|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999944 57777664 59999999999999999764
No 395
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.22 E-value=0.0037 Score=47.76 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhccc
Q 039806 191 IELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAK 240 (398)
Q Consensus 191 e~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q 240 (398)
.+|.+.|++||+|+.+++..|. + ||+|.+.++|.+|+. +...+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~-----~-fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ-----M-LVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE-----E-EEECSCSHHHHHHHH-GGGSE
T ss_pred HHHHHHHHHCCCEEEEEEecCc-----E-EEEEcChHHHHHHHh-cCCee
Confidence 5699999999999999999774 5 899999999999996 55443
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.82 E-value=0.0058 Score=46.94 Aligned_cols=70 Identities=7% Similarity=0.125 Sum_probs=50.7
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcC--CC-CceeEEEEEecCHHHHHHHHHHhcCCeecc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQ--EG-KSKGYGFVQYSTPESALDAIEKLQGATVER 82 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~--~g-~skg~aFV~F~~~e~A~~Ai~~lng~~l~g 82 (398)
.+-+|-|+.||++.||+++.+.++.+-.+.......-. .+ ..-.-|||.|.+.|+...-.+..+|..+-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35579999999999999999888776544322221111 11 112358999999999999999999987754
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.71 E-value=0.0054 Score=60.74 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHH
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
.++|+|. .+..+++++|.++|++||.|.++..-.+. | -||.|+|.+.+++.++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-C---eEEEEEeCCHHHHHHHHhc
Confidence 4679997 79999999999999999999988876542 2 5999999999999987753
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.99 E-value=0.077 Score=41.15 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.7
Q ss_pred hhhccccCCCccc-C----HHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHhccccC
Q 039806 176 ERAELYKNINDEV-D----EIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIMYAKQG 242 (398)
Q Consensus 176 ~~~~~v~nL~~~v-t----ee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q~~q~~ 242 (398)
.+++++.||+.++ + .+.++++|..|+.+.+....+.= |-.-|.|.+.++|.+|+++++...-+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceec
Confidence 3567889998876 2 25789999999999888777321 11179999999999999999977644
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.96 E-value=0.49 Score=47.53 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCCccccCCCcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 3 STPNSEARLSGIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 3 s~rd~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
+..|+...+ ..-++|+ ++..+...+|.++|+.||.| +|+.+.| -.|||.|.+.++|..+++.++
T Consensus 431 ~g~d~~~~R--~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 431 EGPDLQPKR--DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp SSCCCCCCG--GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCCCc--CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 444554432 3456665 99999999999999999965 5665443 359999999999999999875
No 400
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.83 E-value=0.45 Score=35.98 Aligned_cols=60 Identities=5% Similarity=-0.019 Sum_probs=44.5
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCCccce---EEEecccHHHHHHHHHHh
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGISKGH---CMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~skGf---fV~f~~~~ea~~A~l~~q 237 (398)
++.|++||...||+++.+.++....+.....+..+ ..+..-+ ||.|.+.+++..-....+
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 46779999999999999999999988777665443 2222222 999999887776555444
No 401
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.82 E-value=0.51 Score=37.49 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=41.7
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHH
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~ 236 (398)
++.+.|.+.+.+. -+.+.++|++||+|++.... ++ .--..|.|+++.+|++|+.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~-~NWihI~Y~s~~~A~rAL~kN 79 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NT-GNWMHIRYQSKLQARKALSKD 79 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SS-SSEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CC-CCeEEEEeCCHHHHHHHHHhC
Confidence 4455567777774 66778899999999988862 11 122389999999999998654
No 402
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.80 E-value=0.46 Score=36.69 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=44.6
Q ss_pred hhhccccCCCcccCHHHHHHHhhcC-----CCeEEEEEeeCCCCCccceEEEecccHHHHHHHHH
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQC-----GTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLR 235 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~f-----G~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~ 235 (398)
.+++.|.|||.+++++.|.-+|++- |.|.+++... .+-.|+|.+.+.|.+-+.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC
Confidence 4678889999999999999999882 7899998863 2238999999999877665
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.67 E-value=0.31 Score=48.17 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred hhhccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccce--EEEecccHHHHHHHHH
Q 039806 176 ERAELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGH--CMAIAQTKRERTSYLR 235 (398)
Q Consensus 176 ~~~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGf--fV~f~~~~ea~~A~l~ 235 (398)
.+.++|. .+.++++.+|.++|++||.|.++..-. ++|. .|+|++.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-----~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-----SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-----SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-----cCCeEEEEEeCCHHHHHHHHhc
Confidence 4666665 799999999999999999999998763 3454 7899998888866444
No 404
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=84.67 E-value=1.1 Score=34.14 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.5
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~ 236 (398)
.+.+ +.|.++.-.||.++|+.||.| .|+-+.| .-.||.|.+++.|..|+...
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 4445 899999999999999999954 4666654 22399999999998877644
No 405
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=84.56 E-value=1.1 Score=34.30 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=40.7
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRI 236 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~ 236 (398)
.+.+ +.|.++.-.||.++|+.|| =..|+-+.| .-.||.|.+++.|..|+...
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-----TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-----TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-----TEEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 3444 8999999999999999999 445666655 22399999999998887654
No 406
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=73.24 E-value=1.9 Score=32.81 Aligned_cols=56 Identities=5% Similarity=0.012 Sum_probs=36.7
Q ss_pred hccccCCCcccCHHHHHHHhhcCCCeEEEEEeeCC-CCC----ccceEEEecccHHHHHHHH
Q 039806 178 AELYKNINDEVDEIELKQYFSQCGTISSVKIMRTD-RGI----SKGHCMAIAQTKRERTSYL 234 (398)
Q Consensus 178 ~~~v~nL~~~vtee~L~~~F~~fG~I~svki~~d~-~g~----skGffV~f~~~~ea~~A~l 234 (398)
++.|+.||+..||+++.+.++..=.+.....+..+ +-+ ||. ||.|.+.++...-..
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRA-YI~F~~~edv~~F~~ 71 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRA-YINFRNPDDILLFRD 71 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCC-EEEESCHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEE-EEEeCCHHHHHHHHH
Confidence 46679999999999999988876554332222111 111 222 999999987665443
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.63 E-value=14 Score=27.26 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=45.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
.+-++-..+...+..+|++.++. |+ .|.+|+....++|.. -|||.+....+|.....++
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHHHS
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHHhh
Confidence 35667778899999999999987 77 588888877665543 3999999988888766543
No 408
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=67.01 E-value=1.2 Score=43.25 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 039806 191 IELKQYF 197 (398)
Q Consensus 191 e~L~~~F 197 (398)
+.++++|
T Consensus 324 ~~~~~~~ 330 (448)
T 2z73_A 324 EAISQTF 330 (448)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 3444444
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.41 E-value=49 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=47.3
Q ss_pred CcceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 13 GIGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 13 ~~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
..+-|.|-|+|..+-..++.-.....|--..|..+ .|-|.|.|.+.++-+-||.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 46778999999999999988888888876667663 3669999999999999999873
No 410
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=58.80 E-value=3.7 Score=33.06 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred hhccccCCCcccCHHHHHHHhhcCCCeEE-EEEeeCC---------CCCc-----cce-EEEecccHHHHHHHHHH
Q 039806 177 RAELYKNINDEVDEIELKQYFSQCGTISS-VKIMRTD---------RGIS-----KGH-CMAIAQTKRERTSYLRI 236 (398)
Q Consensus 177 ~~~~v~nL~~~vtee~L~~~F~~fG~I~s-vki~~d~---------~g~s-----kGf-fV~f~~~~ea~~A~l~~ 236 (398)
..+.|.+.|.+. ...+.++|++||.|.+ +.+.++. ..+- ..+ .|.|+++.+|.||+.+.
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 334445565444 4566788999999976 2222100 0011 111 89999999999998543
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.78 E-value=35 Score=23.97 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHhccC-----CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhcCCeecceEeeeecc
Q 039806 24 STIDNLKLHQIFSKFG-----DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQGATVERMELYVGPF 90 (398)
Q Consensus 24 ~~vte~~L~~~F~~~G-----~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~l~gk~i~V~~~ 90 (398)
..++..+|..++..-+ .|-.|.|. ..|.||+-.. +.|..+++.|++..+.|+.+.|+.+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4567778888887644 35666663 2479998775 5688899999999999999988765
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=50.98 E-value=30 Score=25.45 Aligned_cols=57 Identities=9% Similarity=0.174 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHH
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~ 73 (398)
.+-++-..+.+.+..+|++.++. || .|.+|+...-+.|.. -|||.+...++|.....
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~K--KA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEK--KAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCce--EEEEEECCCCcHHHHHH
Confidence 35667778899999999999977 77 588888877665433 49999988877665443
No 413
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=49.52 E-value=44 Score=27.10 Aligned_cols=58 Identities=17% Similarity=0.394 Sum_probs=44.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 16 NAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
+-++--.+...+..+|.+.++. |+ .|.+|+.+.-++|.-| |||.+....+|.+....+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KK--AyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKK--AYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEE--EEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceE--EEEEeCCCCcHHHHHHhh
Confidence 5666677889999999988877 67 5888888776665443 999999888887765543
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=48.90 E-value=31 Score=28.22 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=44.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 15 GNAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 15 ~~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
.+-++--.+...+..+|.+.++. |+ .|.+|+.+..++|.-+ |||.+....+|.+....+
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KK--AyV~La~~~dAldvAnki 147 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKK--AYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEE--EEEEECSSSCHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEE--EEEEcCCCCcHHHHHHhh
Confidence 35666677888999999988877 67 5888888777665443 999999888887765543
No 415
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=41.01 E-value=3.7 Score=33.84 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecC
Q 039806 29 LKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYST 64 (398)
Q Consensus 29 ~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~ 64 (398)
+|+.++|...|.|..... .||||||.-++
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeCc
Confidence 566777888887765544 78999998763
No 416
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=39.17 E-value=42 Score=27.54 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHH
Q 039806 16 NAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIE 73 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~ 73 (398)
+-++-..+...+..+|.+.++. |+ .|.+|+.+..++|.-| |||.+....+|.+...
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KK--AyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKK--AYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEE--EEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceE--EEEEcCCCCcHHHHHH
Confidence 4566667788888888888876 67 5888888776655443 9999998888776544
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.07 E-value=60 Score=27.22 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=37.0
Q ss_pred EEEcCCCC-C--------CcHHHHHHHH--hccCCeeEEEEEEcCCCCceeEEEEEecCHHHH
Q 039806 17 AFVKNLAS-T--------IDNLKLHQIF--SKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESA 68 (398)
Q Consensus 17 lfV~nLp~-~--------vte~~L~~~F--~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A 68 (398)
+.|-|++. . ....+|.+.| +.|..+. |+.+.+..| +.|++.|.|.+.-+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHH
Confidence 56778776 2 2457899977 9998864 777777766 679999999865443
No 418
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=38.98 E-value=52 Score=24.98 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHhc-cC---CeeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FG---DIQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G---~I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
..++..+|++...+ |+ .+.-|.=++.. .|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888887755 44 33444444444 6678888876 677766654
No 419
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.67 E-value=74 Score=26.19 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=42.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhc-cC-CeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHH
Q 039806 16 NAFVKNLASTIDNLKLHQIFSK-FG-DIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~~-~G-~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
+-++-..+.+.+.-+|.+.++. || .|.+|+.+.-..|.- -|||.+...++|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~K--KAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEK--KAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCE--EEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEECCCCcHHHHHHh
Confidence 4566777889999999998877 77 588888777665433 499999888777665543
No 420
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=37.66 E-value=61 Score=24.66 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhc-cC---CeeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FG---DIQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G---~I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
...+..+|++...+ |+ .+.-|.=++.. .|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67788898887755 44 23344444444 6778888877 777777754
No 421
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=36.89 E-value=61 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
...+..+|++...+ |+. +.-|.=++.. .|++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788888887655 543 3334444444 6678888877 777777764
No 422
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=36.48 E-value=83 Score=25.21 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
..++..||++.+.. |+. +.-|.=+... .|.+.|||.| |++.|.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46789999998865 663 3334434444 5678888877 677777654
No 423
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=34.84 E-value=47 Score=32.95 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCcccCHHHHHHHhhcCCCeEEEEEeeCCCCCccceEEEecccHHHHHHHHHHh
Q 039806 184 INDEVDEIELKQYFSQCGTISSVKIMRTDRGISKGHCMAIAQTKRERTSYLRIM 237 (398)
Q Consensus 184 L~~~vtee~L~~~F~~fG~I~svki~~d~~g~skGffV~f~~~~ea~~A~l~~q 237 (398)
++..+...+|.+.|+.||. .+|+.+.| +.+||.|.+.+.|..+.....
T Consensus 447 f~~~~~~~~i~~~fs~fg~-v~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 447 FPKEWKTSDLYQLFSAFGN-IQISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCTTCCHHHHHHHGGGGCC-CEEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCC-EEEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 5677888999999999995 45665533 345999999999988766553
No 424
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.79 E-value=1.5e+02 Score=21.77 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=24.4
Q ss_pred eeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 41 IQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 41 I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
|.+|.+... -.||-||+++..++...+|+..
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTC
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCC
Confidence 666666542 6899999999999888888754
No 425
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=28.46 E-value=1e+02 Score=23.72 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=31.9
Q ss_pred cCCCcccCHHHHHHHhh-------cCCCeEEEEEeeCCCCCccce----EEEecccHHHH
Q 039806 182 KNINDEVDEIELKQYFS-------QCGTISSVKIMRTDRGISKGH----CMAIAQTKRER 230 (398)
Q Consensus 182 ~nL~~~vtee~L~~~F~-------~fG~I~svki~~d~~g~skGf----fV~f~~~~ea~ 230 (398)
-.|.++++++++.++.+ +.-.|.++.+-++..+.++|| ++.|++.++-.
T Consensus 28 fklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~ 87 (116)
T 3bgu_A 28 FRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFR 87 (116)
T ss_dssp EEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHH
Confidence 45566666654433332 345688899988877777888 66777766543
No 426
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.56 E-value=60 Score=32.19 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHH--hccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHH
Q 039806 30 KLHQIF--SKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEK 74 (398)
Q Consensus 30 ~L~~~F--~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 74 (398)
+|..+| +.+|-|+++.+...+.......+++.|.+.++|.+|++.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 263 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDA 263 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 356667 368999999888777656667789999998888775543
No 427
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.87 E-value=1.7e+02 Score=19.43 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=43.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHh
Q 039806 14 IGNAFVKNLASTIDNLKLHQIFSKFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKL 75 (398)
Q Consensus 14 ~~~lfV~nLp~~vte~~L~~~F~~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 75 (398)
..++.|.++.-.--...|.+.++. ..|.++.+-. ..+-+-|.|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHHc
Confidence 347889999987778889999999 8888888733 4466888888666777777753
No 428
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.44 E-value=54 Score=24.76 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESAL 69 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~ 69 (398)
...+..+|++...+ |+. +.-|.=++.. .|++.|||.| |+|.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 46688888876654 443 2222222233 4677888876 55555554
No 429
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=21.89 E-value=58 Score=32.95 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHh----ccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 16 NAFVKNLASTIDNLKLHQIFS----KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 16 ~lfV~nLp~~vte~~L~~~F~----~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
+|..+.++++.+.-||+.+|. .+|-|+++.+...+.......+++.|.+.++|.+|+..+-
T Consensus 275 ~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 275 TLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp EECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 443333455555557777764 3677999888777655566788999999999999988653
No 430
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=21.29 E-value=2.1e+02 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.7
Q ss_pred hcCCCeEEEEEeeCCCCCccce----EEEecccHHHH
Q 039806 198 SQCGTISSVKIMRTDRGISKGH----CMAIAQTKRER 230 (398)
Q Consensus 198 ~~fG~I~svki~~d~~g~skGf----fV~f~~~~ea~ 230 (398)
.+.-.|.++.+-++..+.++|| ++.|++.++-.
T Consensus 34 ~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~ 70 (103)
T 2qyc_A 34 RECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHD 70 (103)
T ss_dssp HHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHH
T ss_pred hcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHH
Confidence 3467799999988877777888 67777766543
No 431
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=21.25 E-value=1.4e+02 Score=24.36 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEEEEEEcC--CCCceeEEEEEecCHHHHHH
Q 039806 24 STIDNLKLHQIFSK-FGD---IQSSKVVVSQ--EGKSKGYGFVQYSTPESALD 70 (398)
Q Consensus 24 ~~vte~~L~~~F~~-~G~---I~~vki~~d~--~g~skg~aFV~F~~~e~A~~ 70 (398)
..++..||.+.+.. |+. +.-|.=+... .|.+.|||.| |+|.|.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 56788899887766 553 3333333444 5678888887 677777664
No 432
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.10 E-value=82 Score=32.29 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHHHh----ccCCeeEEEEEEcCCCCceeEEEEEecCHHHHHHHHHHhc
Q 039806 22 LASTIDNLKLHQIFS----KFGDIQSSKVVVSQEGKSKGYGFVQYSTPESALDAIEKLQ 76 (398)
Q Consensus 22 Lp~~vte~~L~~~F~----~~G~I~~vki~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 76 (398)
.+++.+-=||..+|- .+|-|+++.+..-+.-..+.++++.|.+.++|.+++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 445555557888883 3788999988877766677899999999999999998763
Done!