Query 039808
Match_columns 358
No_of_seqs 157 out of 1685
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 8.5E-17 1.8E-21 169.0 14.5 174 136-326 235-410 (968)
2 PLN00113 leucine-rich repeat r 99.7 1.5E-16 3.2E-21 167.2 13.9 256 50-326 181-458 (968)
3 PLN03210 Resistant to P. syrin 99.7 8.7E-16 1.9E-20 162.6 17.0 62 113-177 655-719 (1153)
4 PLN03210 Resistant to P. syrin 99.7 6.5E-16 1.4E-20 163.6 15.7 119 189-313 777-910 (1153)
5 KOG4658 Apoptotic ATPase [Sign 99.5 3E-14 6.4E-19 144.8 4.9 158 187-347 714-884 (889)
6 KOG4194 Membrane glycoprotein 99.4 1.4E-13 2.9E-18 128.7 0.7 184 113-312 243-431 (873)
7 KOG0444 Cytoskeletal regulator 99.3 1.6E-13 3.4E-18 129.4 -3.1 268 4-313 102-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.3 6.6E-14 1.4E-18 131.8 -6.0 202 110-325 121-344 (1255)
9 KOG4194 Membrane glycoprotein 99.2 2.7E-12 5.9E-17 120.2 -0.2 61 5-72 173-236 (873)
10 KOG0472 Leucine-rich repeat pr 98.9 7.5E-11 1.6E-15 106.1 -2.5 59 111-173 248-308 (565)
11 PRK15387 E3 ubiquitin-protein 98.8 4E-08 8.6E-13 98.8 11.2 74 217-308 382-457 (788)
12 PRK15387 E3 ubiquitin-protein 98.8 6.1E-08 1.3E-12 97.4 12.0 244 8-327 204-452 (788)
13 PRK15370 E3 ubiquitin-protein 98.8 1.9E-08 4.2E-13 101.3 8.1 17 57-73 220-236 (754)
14 KOG0472 Leucine-rich repeat pr 98.7 5.7E-10 1.2E-14 100.6 -2.7 177 116-315 363-545 (565)
15 KOG0618 Serine/threonine phosp 98.7 1.6E-09 3.5E-14 106.8 -1.1 38 270-308 448-488 (1081)
16 KOG0618 Serine/threonine phosp 98.7 3.3E-09 7E-14 104.7 -0.7 174 136-327 286-483 (1081)
17 KOG4658 Apoptotic ATPase [Sign 98.6 1.7E-08 3.7E-13 103.3 3.4 224 17-300 562-798 (889)
18 PRK15370 E3 ubiquitin-protein 98.5 1.3E-07 2.9E-12 95.3 6.9 17 58-74 242-258 (754)
19 cd00116 LRR_RI Leucine-rich re 98.5 9.6E-08 2.1E-12 87.6 4.2 46 22-70 19-64 (319)
20 KOG0617 Ras suppressor protein 98.4 4.9E-09 1.1E-13 84.2 -5.0 136 15-172 46-183 (264)
21 KOG0617 Ras suppressor protein 98.4 4.5E-09 9.9E-14 84.4 -5.8 160 138-319 34-195 (264)
22 KOG4237 Extracellular matrix p 98.3 3.5E-08 7.5E-13 89.1 -2.5 116 15-173 80-199 (498)
23 cd00116 LRR_RI Leucine-rich re 98.2 7.5E-07 1.6E-11 81.6 1.9 194 51-253 17-231 (319)
24 KOG3207 Beta-tubulin folding c 98.0 2.3E-06 4.9E-11 78.5 1.5 86 135-227 195-281 (505)
25 KOG2120 SCF ubiquitin ligase, 97.9 1.4E-06 3.1E-11 76.1 -0.9 117 137-256 234-351 (419)
26 KOG2120 SCF ubiquitin ligase, 97.9 4.7E-07 1E-11 79.1 -4.2 181 116-308 186-375 (419)
27 PF14580 LRR_9: Leucine-rich r 97.9 5.5E-06 1.2E-10 68.6 1.7 58 116-174 65-125 (175)
28 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 68.2 10.0 135 136-306 51-187 (426)
29 KOG4341 F-box protein containi 97.8 1.6E-06 3.5E-11 79.1 -2.6 149 160-313 292-443 (483)
30 PF14580 LRR_9: Leucine-rich r 97.8 1.3E-05 2.7E-10 66.4 2.6 126 116-250 20-147 (175)
31 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 68.6 7.9 134 158-327 48-184 (426)
32 KOG1259 Nischarin, modulator o 97.7 9.6E-06 2.1E-10 71.2 0.1 60 216-285 351-410 (490)
33 PF13855 LRR_8: Leucine rich r 97.7 6.9E-05 1.5E-09 50.6 4.3 35 271-306 22-59 (61)
34 KOG3207 Beta-tubulin folding c 97.6 2.3E-05 4.9E-10 72.1 1.5 208 23-251 118-334 (505)
35 KOG4341 F-box protein containi 97.5 1.7E-06 3.7E-11 78.9 -7.4 171 138-312 139-336 (483)
36 PF13855 LRR_8: Leucine rich r 97.5 0.00028 6.1E-09 47.6 5.0 58 138-200 2-59 (61)
37 KOG1947 Leucine rich repeat pr 97.0 6.4E-05 1.4E-09 72.9 -3.1 120 136-256 187-308 (482)
38 KOG3665 ZYG-1-like serine/thre 96.8 0.00037 8E-09 70.1 0.4 130 162-305 122-259 (699)
39 KOG1909 Ran GTPase-activating 96.7 0.00063 1.4E-08 61.1 1.2 34 273-307 269-309 (382)
40 KOG4237 Extracellular matrix p 96.5 0.00032 7E-09 64.0 -1.7 88 132-227 269-356 (498)
41 KOG1859 Leucine-rich repeat pr 96.5 7.2E-05 1.6E-09 73.1 -6.6 109 110-228 182-290 (1096)
42 KOG1259 Nischarin, modulator o 96.4 0.00063 1.4E-08 60.0 -1.0 85 111-201 325-410 (490)
43 PLN03150 hypothetical protein; 96.3 0.0074 1.6E-07 60.7 6.2 110 192-313 420-532 (623)
44 COG4886 Leucine-rich repeat (L 96.3 0.0048 1E-07 58.4 4.6 99 116-227 187-287 (394)
45 PLN03150 hypothetical protein; 96.3 0.009 2E-07 60.0 6.6 111 163-289 419-530 (623)
46 KOG2982 Uncharacterized conser 96.2 0.0013 2.8E-08 58.1 0.2 124 158-291 142-266 (418)
47 COG4886 Leucine-rich repeat (L 96.1 0.0064 1.4E-07 57.6 4.4 103 137-253 116-219 (394)
48 KOG3665 ZYG-1-like serine/thre 96.0 0.0024 5.3E-08 64.4 0.9 128 189-328 121-258 (699)
49 PF12799 LRR_4: Leucine Rich r 96.0 0.0055 1.2E-07 38.2 2.2 37 27-71 2-38 (44)
50 KOG0532 Leucine-rich repeat (L 95.8 0.00051 1.1E-08 65.5 -4.3 79 136-226 120-198 (722)
51 KOG3864 Uncharacterized conser 95.8 0.00085 1.8E-08 55.9 -2.6 70 186-257 121-190 (221)
52 KOG1947 Leucine rich repeat pr 95.5 0.0016 3.5E-08 63.0 -2.5 123 158-288 184-309 (482)
53 PF12799 LRR_4: Leucine Rich r 95.2 0.025 5.5E-07 35.2 3.2 35 137-173 1-35 (44)
54 PF13504 LRR_7: Leucine rich r 94.3 0.029 6.2E-07 27.1 1.4 17 296-313 1-17 (17)
55 KOG3864 Uncharacterized conser 93.9 0.011 2.4E-07 49.4 -1.0 68 215-288 123-190 (221)
56 KOG1644 U2-associated snRNP A' 93.6 0.12 2.5E-06 43.5 4.5 89 110-200 59-150 (233)
57 KOG0532 Leucine-rich repeat (L 93.6 0.019 4.1E-07 55.2 -0.1 33 139-173 213-245 (722)
58 KOG2982 Uncharacterized conser 93.6 0.11 2.4E-06 46.3 4.5 104 217-327 173-286 (418)
59 PF00560 LRR_1: Leucine Rich R 92.7 0.064 1.4E-06 27.8 1.1 20 297-317 1-20 (22)
60 KOG1909 Ran GTPase-activating 91.9 0.023 4.9E-07 51.4 -1.9 163 137-307 92-281 (382)
61 KOG1859 Leucine-rich repeat pr 91.5 0.01 2.3E-07 58.6 -4.8 42 24-74 185-226 (1096)
62 PF13306 LRR_5: Leucine rich r 91.3 0.56 1.2E-05 36.3 5.6 83 157-251 7-89 (129)
63 KOG1644 U2-associated snRNP A' 91.2 0.23 5.1E-06 41.7 3.4 107 137-252 42-149 (233)
64 KOG2739 Leucine-rich acidic nu 90.9 0.13 2.9E-06 44.7 1.8 85 216-306 64-153 (260)
65 KOG0531 Protein phosphatase 1, 88.0 0.11 2.3E-06 49.7 -1.0 109 22-153 91-201 (414)
66 KOG2123 Uncharacterized conser 87.3 0.052 1.1E-06 47.8 -3.3 52 118-172 22-73 (388)
67 KOG0531 Protein phosphatase 1, 86.1 0.16 3.5E-06 48.5 -1.0 127 24-173 70-197 (414)
68 KOG2123 Uncharacterized conser 85.1 0.099 2.1E-06 46.1 -2.6 77 217-307 19-99 (388)
69 KOG2739 Leucine-rich acidic nu 82.7 0.58 1.3E-05 40.9 1.0 97 216-325 42-148 (260)
70 smart00367 LRR_CC Leucine-rich 82.2 0.93 2E-05 24.3 1.4 16 295-310 1-16 (26)
71 PF13306 LRR_5: Leucine rich r 80.4 7.3 0.00016 29.8 6.6 89 150-251 23-111 (129)
72 KOG4579 Leucine-rich repeat (L 74.8 0.82 1.8E-05 36.2 -0.4 61 7-75 55-118 (177)
73 COG5238 RNA1 Ran GTPase-activa 67.6 3.7 7.9E-05 36.5 1.9 46 22-70 88-133 (388)
74 smart00369 LRR_TYP Leucine-ric 67.3 4 8.6E-05 21.7 1.4 21 295-316 1-21 (26)
75 smart00370 LRR Leucine-rich re 67.3 4 8.6E-05 21.7 1.4 21 295-316 1-21 (26)
76 KOG4579 Leucine-rich repeat (L 65.3 0.37 8E-06 38.1 -4.1 32 274-306 77-110 (177)
77 PF13516 LRR_6: Leucine Rich r 42.8 16 0.00035 18.8 1.2 13 295-307 1-13 (24)
78 smart00364 LRR_BAC Leucine-ric 41.1 18 0.00039 19.6 1.2 19 296-315 2-20 (26)
79 smart00365 LRR_SD22 Leucine-ri 31.2 40 0.00087 18.1 1.6 11 25-35 1-11 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=8.5e-17 Score=168.96 Aligned_cols=174 Identities=11% Similarity=0.021 Sum_probs=79.5
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
+++|+.|++.++.-...++. .++++++|++|++++|.....++.. ...+++|++|+++++.....+ +...+.
T Consensus 235 l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~---p~~~~~ 306 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEI---PELVIQ 306 (968)
T ss_pred CCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchh----HhhccCcCEEECcCCeeccCC---ChhHcC
Confidence 44445554444421112222 3444445555555444322222111 233445555555544322222 111233
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-- 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-- 293 (358)
+++|++|++.++...... + ..+..+++|+.|++++|.-...++ ...+.+++|+.|+++++.--..++..
T Consensus 307 l~~L~~L~l~~n~~~~~~-~-~~~~~l~~L~~L~L~~n~l~~~~p-------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKI-P-VALTSLPRLQVLQLWSNKFSGEIP-------KNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred CCCCcEEECCCCccCCcC-C-hhHhcCCCCCEEECcCCCCcCcCC-------hHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 455555555554322211 1 223455555555555553332333 23455566666666555322233333
Q ss_pred CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808 294 AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK 326 (358)
Q Consensus 294 ~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~ 326 (358)
.+++|+.|++.+|+....+|.....+++|+.+.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 556667777766665555666555666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.5e-16 Score=167.16 Aligned_cols=256 Identities=14% Similarity=0.046 Sum_probs=140.7
Q ss_pred hhhhcCCCCCceEEEEccCch-hHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--
Q 039808 50 VLEVCNLTELSSLCFHFPEIK-LLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE-- 126 (358)
Q Consensus 50 ~~~l~~l~~L~~L~~~~~~l~-~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-- 126 (358)
+..++++++|++|++..+.+. .+|..++ .+++|+.+.+...... ...|. .+..+.+|+.|.+.++.
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~----~~~p~--~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELG-----QMKSLKWIYLGYNNLS----GEIPY--EIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHc-----CcCCccEEECcCCccC----CcCCh--hHhcCCCCCEEECcCceec
Confidence 344556666666666544432 2333323 3455555544211100 12232 45556678888887664
Q ss_pred CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccc
Q 039808 127 NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHI 206 (358)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 206 (358)
+..+.....+++|+.|++.++.-...++. .+.++++|++|++++|.....++.. ...+++|+.|++.++...+.+
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPEL----VIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChh----HcCCCCCcEEECCCCccCCcC
Confidence 22233445678888888887732233433 4777888888888877544333332 445677888887776543332
Q ss_pred cccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc-----------------ccccccc
Q 039808 207 CEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE-----------------GEIIDSG 269 (358)
Q Consensus 207 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~-----------------~~~~~~~ 269 (358)
+...+.+++|+.|++.+|.-...+ | ..++.+++|+.|+++++.-...++.. .......
T Consensus 325 ---~~~~~~l~~L~~L~L~~n~l~~~~-p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 325 ---PVALTSLPRLQVLQLWSNKFSGEI-P-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred ---ChhHhcCCCCCEEECcCCCCcCcC-C-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 222345677777777776533222 2 24566777777777765432222200 0001123
Q ss_pred cccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK 326 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~ 326 (358)
...+++|+.|++.+|.--..++.. .+++|+.|++++|.--..+|.....+++|+.+.
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 455667777777666433334433 677777777777765555555555566666653
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=8.7e-16 Score=162.64 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=33.1
Q ss_pred cccCCceEEeeCCC---CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE
Q 039808 113 YNKQGKCLRFINGE---NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET 177 (358)
Q Consensus 113 ~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~ 177 (358)
.+.+|+.|.+.++. .+|. ....+++|+.|.+.+|..+..++.. .++++|+.|++++|..++.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred cCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccc
Confidence 34456666665553 2222 2334566666666666555555531 2556666666666654433
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=6.5e-16 Score=163.61 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=83.9
Q ss_pred CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc----
Q 039808 189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE---- 264 (358)
Q Consensus 189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~---- 264 (358)
+++|++|.+++++.+..+ |...+.+++|+.|++.+|..++.++.. ..+++|+.|++++|..++.++....
T Consensus 777 ~~sL~~L~Ls~n~~l~~l---P~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVEL---PSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred cccchheeCCCCCCcccc---ChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCE
Confidence 357777777777766655 333556778888888888777776332 2577888888888777665542110
Q ss_pred ---------ccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccC
Q 039808 265 ---------IIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 265 ---------~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP 313 (358)
..+.+...+++|+.|++.+|++++.++.. .+++|+.+++++|++|+.++
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 01134566888999999899888888876 78888899999998887664
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=3e-14 Score=144.79 Aligned_cols=158 Identities=24% Similarity=0.345 Sum_probs=94.2
Q ss_pred cCCCccceeecccccccccc--cccccCCC-cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccc
Q 039808 187 VIFPSLENLSIHHLWNLTHI--CEGSVPNG-SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEG 263 (358)
Q Consensus 187 ~~l~~L~~L~l~~~~~l~~~--~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~ 263 (358)
..+.+|++|.|.+|...+.. |....... +|+++..+.+.+|+..... .+....|+|+.|.+..|..++++....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHH
Confidence 34455555555555443221 11111111 2556666666666666554 233456677777777776666655332
Q ss_pred cccc---cccccCCCccee-ccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCC-CC---eeEEEecccccc
Q 039808 264 EIID---SGCTALPRLKKL-TLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLK-HS---VMEIKAEKSWWD 333 (358)
Q Consensus 264 ~~~~---~~~~~l~~L~~L-~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~-~~---L~~~~~~~~~~~ 333 (358)
.... .....|.++..+ .+.+.+.++.+.+. .++.|+.+.+..||+++.+|...... .. ......+.+|-+
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~ 870 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLE 870 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCcccee
Confidence 2111 113445556666 46666667766665 67779999999999999999886542 22 222334567899
Q ss_pred cceecCcccccccc
Q 039808 334 DLEWEDTELQLHLQ 347 (358)
Q Consensus 334 ~l~~~~~~~~~~~~ 347 (358)
.++|+++.+..++.
T Consensus 871 ~v~~~~~~~~~~~~ 884 (889)
T KOG4658|consen 871 GVYWEDELTKLRFW 884 (889)
T ss_pred eEEehhhhhhhhcc
Confidence 99999999888763
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.35 E-value=1.4e-13 Score=128.75 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=96.1
Q ss_pred cccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCC
Q 039808 113 YNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFP 190 (358)
Q Consensus 113 ~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 190 (358)
.+.+++.|++..++ .+.++.+-.+.+++.|++..+ .+..+...++.++..|+.|+++.+. ++.+.-+. =...+
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~---Wsftq 317 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDS---WSFTQ 317 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhh-hheeecch---hhhcc
Confidence 33344444443332 333444444556666666555 5555555555566666666666542 23221111 12335
Q ss_pred ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccc
Q 039808 191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC 270 (358)
Q Consensus 191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 270 (358)
+|++|+++.. .++.+.. .++..+..|++|.++.. ++..+. ...+..+.+|++|+++.. .+.-.. ++....+
T Consensus 318 kL~~LdLs~N-~i~~l~~--~sf~~L~~Le~LnLs~N-si~~l~-e~af~~lssL~~LdLr~N-~ls~~I---EDaa~~f 388 (873)
T KOG4194|consen 318 KLKELDLSSN-RITRLDE--GSFRVLSQLEELNLSHN-SIDHLA-EGAFVGLSSLHKLDLRSN-ELSWCI---EDAAVAF 388 (873)
T ss_pred cceeEecccc-ccccCCh--hHHHHHHHhhhhccccc-chHHHH-hhHHHHhhhhhhhcCcCC-eEEEEE---ecchhhh
Confidence 6666666542 2232211 11223455666666553 233321 123345667777766553 121111 1122456
Q ss_pred ccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCcc
Q 039808 271 TALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNI 312 (358)
Q Consensus 271 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~l 312 (358)
.++|+|++|.+.+. +++.++.. ++++||+|++.+.+ +.++
T Consensus 389 ~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred ccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceee
Confidence 67888888888765 78888877 78888888888875 4444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=1.6e-13 Score=129.37 Aligned_cols=268 Identities=16% Similarity=0.151 Sum_probs=183.2
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhh-hhcCCCCCceEEEEccCchhHHHHHhhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVL-EVCNLTELSSLCFHFPEIKLLELFLQRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~~~~~~l~~l~~~~~~~ 79 (358)
|..|..+||+. ++.|.++ -+-.++-+|++++ ++. ..++. .+.+|..|-.|+++.+.+..+|.-+.
T Consensus 102 l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~-N~I-------etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-- 170 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSY-NNI-------ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-- 170 (1255)
T ss_pred cccceeeecchhhhhhcchhh-hhhcCcEEEEccc-Ccc-------ccCCchHHHhhHhHhhhccccchhhhcCHHHH--
Confidence 45677888886 5677774 5777888888888 333 33332 34677777788887777777776544
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC----CChHHHHhhccCccEEEeccCCCCCccCc
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE----NIPDAVLQILACCTAFYLDNHLHINSLSD 155 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 155 (358)
.+..|+.+.+..+..+- -....+..+..|+.|.+.+.+ ++|.. .+.+.+|..++++.+ ++..+++
T Consensus 171 ---RL~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N-~Lp~vPe 239 (1255)
T KOG0444|consen 171 ---RLSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN-NLPIVPE 239 (1255)
T ss_pred ---HHhhhhhhhcCCChhhH------HHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc-CCCcchH
Confidence 35555655542111110 011234445566777776654 33332 455788888888877 7777777
Q ss_pred ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc
Q 039808 156 FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS 235 (358)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 235 (358)
++.++++|+.|+++++. ++++.-. .....+|++|.+++. .++.+ |.....++.|+.|++.+. +++.-+.
T Consensus 240 -cly~l~~LrrLNLS~N~-iteL~~~----~~~W~~lEtLNlSrN-QLt~L---P~avcKL~kL~kLy~n~N-kL~FeGi 308 (1255)
T KOG0444|consen 240 -CLYKLRNLRRLNLSGNK-ITELNMT----EGEWENLETLNLSRN-QLTVL---PDAVCKLTKLTKLYANNN-KLTFEGI 308 (1255)
T ss_pred -HHhhhhhhheeccCcCc-eeeeecc----HHHHhhhhhhccccc-hhccc---hHHHhhhHHHHHHHhccC-cccccCC
Confidence 68899999999999874 4444222 456788999988874 44444 333456889999998874 5665555
Q ss_pred hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccC
Q 039808 236 SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 236 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP 313 (358)
+..++.+.+|+.+...+ ..++.+| .++..+++|++|.+ +|+.|-.+|.. -++-|+.|+++..|+|.-=|
T Consensus 309 PSGIGKL~~Levf~aan-N~LElVP-------EglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAAN-NKLELVP-------EGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccchhhhhhhHHHHhhc-cccccCc-------hhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 56678899999998876 4777777 56778889999999 56677778887 68999999999988876433
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=6.6e-14 Score=131.81 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=112.9
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
.+.+.+++-.|+++++. .+|......++.|-.|+++++ .+..+++ -+..+.+|++|.+++++-.-. .+.
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPP-Q~RRL~~LqtL~Ls~NPL~hf-------QLr 191 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPP-QIRRLSMLQTLKLSNNPLNHF-------QLR 191 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCH-HHHHHhhhhhhhcCCChhhHH-------HHh
Confidence 44445556666665553 566666666666777777776 6666665 366677777777777653211 022
Q ss_pred CCCccceeeccccccccc-ccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc--
Q 039808 188 IFPSLENLSIHHLWNLTH-ICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE-- 264 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~-- 264 (358)
.+|+++.|..-++.+.+. +...|.+...+.+|+.++++. ..++.+ +..+-.+++|++|++++. ++.++....+
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v--Pecly~l~~LrrLNLS~N-~iteL~~~~~~W 267 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIV--PECLYKLRNLRRLNLSGN-KITELNMTEGEW 267 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcc--hHHHhhhhhhheeccCcC-ceeeeeccHHHH
Confidence 344444443333333221 122244455677888888764 455554 234557888888888874 4444332110
Q ss_pred --------------ccccccccCCCcceecccccc-ccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808 265 --------------IIDSGCTALPRLKKLTLHYLP-GLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI 325 (358)
Q Consensus 265 --------------~~~~~~~~l~~L~~L~l~~c~-~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~ 325 (358)
........+++|++|++.+.. .++.+|++ .+..|+.++..+. +|.-+|++++.+.+|+.+
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHh
Confidence 011234445666666664321 24445555 5667777776653 577777777766555543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=2.7e-12 Score=120.17 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=43.0
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL 72 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l 72 (358)
.|+++|+|+. +.+..+-+.+|.+|-+|.+++ +.+. +-....+++|++|+.|+++.+.++..
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-Nrit------tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRIT------TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeeccc-Cccc------ccCHHHhhhcchhhhhhccccceeee
Confidence 4678888887 445667788888898998887 3221 11245678888888888877776654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.92 E-value=7.5e-11 Score=106.13 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=39.0
Q ss_pred cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808 111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 173 (358)
.+++.++..|++-++. .+|+++ ..+.+|..|+++++ .++.++. +++++ +|+.|.+.+++
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN-~is~Lp~-sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNN-DISSLPY-SLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccccceeeeccccccccCchHH-HHhhhhhhhcccCC-ccccCCc-ccccc-eeeehhhcCCc
Confidence 3445556666665553 556543 34677788888877 7777776 57777 88888777654
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=4e-08 Score=98.76 Aligned_cols=74 Identities=20% Similarity=0.145 Sum_probs=42.3
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--C
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--A 294 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~ 294 (358)
.+|+.|+++++ .++.++. ..++|+.|+++++ .+..+| ..+.+|+.|+++++ .++.+|.. .
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N-~LssIP----------~l~~~L~~L~Ls~N-qLt~LP~sl~~ 443 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLP----------MLPSGLLSLSVYRN-QLTRLPESLIH 443 (788)
T ss_pred cccceEEecCC-cccCCCC-----cccCCCEEEccCC-cCCCCC----------cchhhhhhhhhccC-cccccChHHhh
Confidence 35666666654 3443311 1245666666665 344443 12335677777554 56667665 6
Q ss_pred CCCccEEeeeCCcC
Q 039808 295 WPSLEYVSFYDCPR 308 (358)
Q Consensus 295 ~~~L~~L~i~~C~~ 308 (358)
+++|+.+++++++-
T Consensus 444 L~~L~~LdLs~N~L 457 (788)
T PRK15387 444 LSSETTVNLEGNPL 457 (788)
T ss_pred ccCCCeEECCCCCC
Confidence 77777777777753
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.77 E-value=6.1e-08 Score=97.43 Aligned_cols=244 Identities=15% Similarity=0.102 Sum_probs=142.8
Q ss_pred eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccc
Q 039808 8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNA 84 (358)
Q Consensus 8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~ 84 (358)
..|+++. +.+|..+. .+|+.|++.+ ++++.++ . .+++|++|++..+.++.+|. ..
T Consensus 204 ~~LdLs~~~LtsLP~~l~---~~L~~L~L~~-N~Lt~LP-------~---lp~~Lk~LdLs~N~LtsLP~--------lp 261 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP---AHITTLVIPD-NNLTSLP-------A---LPPELRTLEVSGNQLTSLPV--------LP 261 (788)
T ss_pred cEEEcCCCCCCcCCcchh---cCCCEEEccC-CcCCCCC-------C---CCCCCcEEEecCCccCcccC--------cc
Confidence 4556655 45787652 4789999887 5554322 1 25788899988888877763 23
Q ss_pred cccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808 85 QCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN 162 (358)
Q Consensus 85 ~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~ 162 (358)
.+|+.|.+..+. +..+|. .+..|..|.+.++. .++. .+++|+.|++.++ .+..++.. ..
T Consensus 262 ~sL~~L~Ls~N~-----L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N-~L~~Lp~l----p~ 322 (788)
T PRK15387 262 PGLLELSIFSNP-----LTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN-QLASLPAL----PS 322 (788)
T ss_pred cccceeeccCCc-----hhhhhh-----chhhcCEEECcCCccccccc----cccccceeECCCC-ccccCCCC----cc
Confidence 456666552111 122221 12356667766653 2222 3567888888877 66665531 23
Q ss_pred CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808 163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM 242 (358)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l 242 (358)
+|+.|++++| .+..++. ...+|+.|++++. .++.++. ..++|+.|++.++ .+..++. ..
T Consensus 323 ~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~N-~L~~LP~-----l~ 381 (788)
T PRK15387 323 ELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYNN-RLTSLPA-----LP 381 (788)
T ss_pred cccccccccC-ccccccc-------cccccceEecCCC-ccCCCCC------CCcccceehhhcc-ccccCcc-----cc
Confidence 5777777765 3333321 1246788888764 4444421 1356777777664 3554321 23
Q ss_pred CCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCe
Q 039808 243 SNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSV 322 (358)
Q Consensus 243 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L 322 (358)
.+|+.|+++++ .+..++ ...++|+.|+++++ .++.+|. .+.+|+.|+++++ +++.+|..+..+++|
T Consensus 382 ~~L~~LdLs~N-~Lt~LP----------~l~s~L~~LdLS~N-~LssIP~-l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L 447 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSE 447 (788)
T ss_pred cccceEEecCC-cccCCC----------CcccCCCEEEccCC-cCCCCCc-chhhhhhhhhccC-cccccChHHhhccCC
Confidence 56788888775 454444 12357888888765 5666654 3446777888775 477888777666666
Q ss_pred eEEEe
Q 039808 323 MEIKA 327 (358)
Q Consensus 323 ~~~~~ 327 (358)
..+.-
T Consensus 448 ~~LdL 452 (788)
T PRK15387 448 TTVNL 452 (788)
T ss_pred CeEEC
Confidence 66644
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=1.9e-08 Score=101.27 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=9.7
Q ss_pred CCCceEEEEccCchhHH
Q 039808 57 TELSSLCFHFPEIKLLE 73 (358)
Q Consensus 57 ~~L~~L~~~~~~l~~l~ 73 (358)
++|++|.+..+.++.+|
T Consensus 220 ~nL~~L~Ls~N~LtsLP 236 (754)
T PRK15370 220 GNIKTLYANSNQLTSIP 236 (754)
T ss_pred cCCCEEECCCCccccCC
Confidence 35666666555555554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.75 E-value=5.7e-10 Score=100.57 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=95.5
Q ss_pred CCceEEeeCCC--CChHHHHhhccC--ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILAC--CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPS 191 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~--L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 191 (358)
+.+.|.+.+-+ .+|+.+++.... .+...+..+ .+..+|. .+..+..+.+.-+.++..+..++.. +..+++
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk-~L~~lkelvT~l~lsnn~isfv~~~----l~~l~k 436 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPK-RLVELKELVTDLVLSNNKISFVPLE----LSQLQK 436 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccc-hHhhhhh-hhHHHHHHHHHHHhhcCccccchHH----HHhhhc
Confidence 45556555543 566665553331 334455554 4444443 2333444443333333333333222 556777
Q ss_pred cceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808 192 LENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT 271 (358)
Q Consensus 192 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~ 271 (358)
|.-|++++- -+..+ |...+.+..|+.|+++.. +...+ +.++ +.+...+..+.....++++.. ....
T Consensus 437 Lt~L~L~NN-~Ln~L---P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~-y~lq~lEtllas~nqi~~vd~------~~l~ 502 (565)
T KOG0472|consen 437 LTFLDLSNN-LLNDL---PEEMGSLVRLQTLNLSFN-RFRML--PECL-YELQTLETLLASNNQIGSVDP------SGLK 502 (565)
T ss_pred ceeeecccc-hhhhc---chhhhhhhhhheeccccc-ccccc--hHHH-hhHHHHHHHHhccccccccCh------HHhh
Confidence 777777663 23333 223445666777777654 23322 1122 222222222333345555541 2467
Q ss_pred cCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC
Q 039808 272 ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 272 ~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
++.+|.+|++.+ +.++.+|.. +|++|++|.++|.|.= .|..
T Consensus 503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred hhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC--CCHH
Confidence 888999999954 478889988 8999999999998732 5543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=1.6e-09 Score=106.83 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=23.5
Q ss_pred cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcC
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPR 308 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~ 308 (358)
+..+++|+.+++ +|++|+.+-.. ..+.|++|+++|.+.
T Consensus 448 ~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 445666777777 45566665444 346777777777653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-09 Score=104.71 Aligned_cols=174 Identities=15% Similarity=0.221 Sum_probs=114.1
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC----------------------ccccCCCccc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE----------------------LTTVIFPSLE 193 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~l~~L~ 193 (358)
.++|+.|.+..+ .+.+++++ .++++.|++|++..+ ++...++... +....++.|+
T Consensus 286 ~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 286 ITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 456666666666 77777763 677889999999876 4444433210 0112234555
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL 273 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l 273 (358)
.|++.+-. ++.-+ .+....|.+||.|++++. ++..+ |...+.+++.|++|++++. +++.++ .+...+
T Consensus 363 ~LylanN~-Ltd~c--~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp-------~tva~~ 429 (1081)
T KOG0618|consen 363 ELYLANNH-LTDSC--FPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGN-KLTTLP-------DTVANL 429 (1081)
T ss_pred HHHHhcCc-ccccc--hhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccc-hhhhhh-------HHHHhh
Confidence 55554432 22211 122457889999999885 56654 4456788999999999984 777777 467788
Q ss_pred CCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCC-CCeeEEEe
Q 039808 274 PRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLK-HSVMEIKA 327 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~-~~L~~~~~ 327 (358)
+.|++|... -+.+..+|.. .++.|+.++++. ..|+.+-...... +.|+.++-
T Consensus 430 ~~L~tL~ah-sN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 430 GRLHTLRAH-SNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred hhhHHHhhc-CCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeec
Confidence 999999884 4478888855 899999999954 5677654333333 66776643
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-08 Score=103.29 Aligned_cols=224 Identities=20% Similarity=0.176 Sum_probs=112.5
Q ss_pred cCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeC
Q 039808 17 ISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGH 96 (358)
Q Consensus 17 ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~ 96 (358)
++.+.+..++.|++||++++.+ ....|.+|++|-+|+.|++..+.++.+|..++ ++++|.
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~-------l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-----~Lk~L~-------- 621 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSS-------LSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-----NLKKLI-------- 621 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCc-------cCcCChHHhhhhhhhcccccCCCccccchHHH-----HHHhhh--------
Confidence 4444455666666666665222 23445566666666666666666666665444 233333
Q ss_pred ccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCC-CCCccCcccccCccCCcEEEeecCC
Q 039808 97 DIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHL-HINSLSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~-~~~~l~~~~l~~l~~L~~L~l~~~~ 173 (358)
+|++.... .....+...+.+|+.|.+.... .........+.++.+|+.+.+..+.
T Consensus 622 ----------------------~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 622 ----------------------YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ----------------------eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 33332221 1112333445666666665442 1111111124455555555554332
Q ss_pred CceEecCCCCccccCCCccc----eeecccccccccccccccCCCcCccccEEeEecCCCccccC---chhhhc-cCCCc
Q 039808 174 KIETVVDGKELTTVIFPSLE----NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF---SSFMIH-FMSNL 245 (358)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~l~-~l~~L 245 (358)
. .+... ....++|. .+.+.++..-. .....+.+.+|+.|.|.+|....... ...... .++++
T Consensus 680 ~--~~~e~----l~~~~~L~~~~~~l~~~~~~~~~----~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 680 V--LLLED----LLGMTRLRSLLQSLSIEGCSKRT----LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred h--HhHhh----hhhhHHHHHHhHhhhhcccccce----eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 2 11011 11222333 22222211111 12334567889999999887654321 001111 25567
Q ss_pred cEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccE
Q 039808 246 EDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEY 300 (358)
Q Consensus 246 ~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~ 300 (358)
..+.+.+|..++... +....|+|+.|++..|+.++++.+. .+..+..
T Consensus 750 ~~~~~~~~~~~r~l~--------~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLT--------WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHhhccccccccc--------hhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 777777887776653 3456678999999888888877655 4444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.54 E-value=1.3e-07 Score=95.31 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=11.6
Q ss_pred CCceEEEEccCchhHHH
Q 039808 58 ELSSLCFHFPEIKLLEL 74 (358)
Q Consensus 58 ~L~~L~~~~~~l~~l~~ 74 (358)
+|+.|.+..+.+..+|.
T Consensus 242 ~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 242 TIQEMELSINRITELPE 258 (754)
T ss_pred cccEEECcCCccCcCCh
Confidence 67777777666666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.49 E-value=9.6e-08 Score=87.57 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=28.6
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCch
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIK 70 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~ 70 (358)
+..+.+|++|+++++ .+.. .....+...+...++|+.+.+....+.
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGE--EAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred HHHHhhccEEeecCC-CCcH--HHHHHHHHHHhhCCCceEEeccccccC
Confidence 567778999999983 2211 001223455778888888888655443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.44 E-value=4.9e-09 Score=84.23 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=78.7
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV 94 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~ 94 (358)
..+|++| ..|.+|+.|++.+ ...+..+..++.+++|+.|++..+.+..+|..++..|. |..+.+..
T Consensus 46 ~~vppni-a~l~nlevln~~n--------nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~-----levldlty 111 (264)
T KOG0617|consen 46 TVVPPNI-AELKNLEVLNLSN--------NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA-----LEVLDLTY 111 (264)
T ss_pred eecCCcH-HHhhhhhhhhccc--------chhhhcChhhhhchhhhheecchhhhhcCccccCCCch-----hhhhhccc
Confidence 3467775 5788888887776 22344456677888888888877777777766664333 33333211
Q ss_pred eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
+..+ -..+|+ .+-++..|+.|++.+++ -+|.. .+.+++|+.|.++++ ++-+++. .++.+..|++|+|.++
T Consensus 112 nnl~---e~~lpg--nff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn-dll~lpk-eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 112 NNLN---ENSLPG--NFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN-DLLSLPK-EIGDLTRLRELHIQGN 183 (264)
T ss_pred cccc---cccCCc--chhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC-chhhCcH-HHHHHHHHHHHhcccc
Confidence 1111 023333 55555566666666654 23333 234666666666666 5555554 3666667777776665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.41 E-value=4.5e-09 Score=84.41 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=102.8
Q ss_pred CccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCc
Q 039808 138 CCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFA 217 (358)
Q Consensus 138 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 217 (358)
+++.|.++.+ .+..+++ .+..+.+|+.|.+.++ .+++++.. +..++.|+.|.+. +..+..+ +..+|+||
T Consensus 34 ~ITrLtLSHN-Kl~~vpp-nia~l~nlevln~~nn-qie~lp~~----issl~klr~lnvg-mnrl~~l---prgfgs~p 102 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPP-NIAELKNLEVLNLSNN-QIEELPTS----ISSLPKLRILNVG-MNRLNIL---PRGFGSFP 102 (264)
T ss_pred hhhhhhcccC-ceeecCC-cHHHhhhhhhhhcccc-hhhhcChh----hhhchhhhheecc-hhhhhcC---ccccCCCc
Confidence 4444555555 5555555 4677777777777665 55555444 5666777776663 3444443 34467788
Q ss_pred cccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CC
Q 039808 218 RLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AW 295 (358)
Q Consensus 218 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~ 295 (358)
.|+.|++.+..--+...|.+++ .++.|+.|++++. .-+.+| ...+.+++|+.|.+.+. .+-++|.+ .+
T Consensus 103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dn-dfe~lp-------~dvg~lt~lqil~lrdn-dll~lpkeig~l 172 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDN-DFEILP-------PDVGKLTNLQILSLRDN-DLLSLPKEIGDL 172 (264)
T ss_pred hhhhhhccccccccccCCcchh-HHHHHHHHHhcCC-CcccCC-------hhhhhhcceeEEeeccC-chhhCcHHHHHH
Confidence 8888888765444444454443 5677777888764 344444 45778888888888766 34456766 68
Q ss_pred CCccEEeeeCCcCCCccCCCCCCC
Q 039808 296 PSLEYVSFYDCPRLKNIGLGSNLK 319 (358)
Q Consensus 296 ~~L~~L~i~~C~~L~~lP~~~~~~ 319 (358)
+.|++|+|.|. .|+-+|..++.+
T Consensus 173 t~lrelhiqgn-rl~vlppel~~l 195 (264)
T KOG0617|consen 173 TRLRELHIQGN-RLTVLPPELANL 195 (264)
T ss_pred HHHHHHhcccc-eeeecChhhhhh
Confidence 88888888885 588888776553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=3.5e-08 Score=89.06 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=72.0
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchh-hhhhcCCCCCceEEEEc-cCchhHHHHHhhhccccccccceEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSV-VLEVCNLTELSSLCFHF-PEIKLLELFLQRCVAWNAQCLTEFRI 92 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~~~~-~~l~~l~~~~~~~~~~~~~~L~~l~i 92 (358)
+.||+++|+.+.+||.|+|+. +.+ ..+ +..+.+++.|..|-+-. +.++.++. +
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~-N~I-------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~--------------- 134 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSK-NNI-------SFIAPDAFKGLASLLSLVLYGNNKITDLPK--G--------------- 134 (498)
T ss_pred ccCChhhccchhhhceecccc-cch-------hhcChHhhhhhHhhhHHHhhcCCchhhhhh--h---------------
Confidence 568888888888888888887 222 222 45677777777666544 56777764 1
Q ss_pred EEeCccccccccCCcccccccccCCceEEeeCC--CCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEee
Q 039808 93 VVGHDIKNIVSRVPDAVAFDYNKQGKCLRFING--ENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIIS 170 (358)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~ 170 (358)
.+..+..++.|.+-.+ ..+....+..++++..|.+.++ .+..++..++..+..++.+.+.
T Consensus 135 -----------------~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 135 -----------------AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred -----------------HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhh
Confidence 1222223333333222 2445555666777777777776 6666666667777788887776
Q ss_pred cCC
Q 039808 171 ECP 173 (358)
Q Consensus 171 ~~~ 173 (358)
.++
T Consensus 197 ~np 199 (498)
T KOG4237|consen 197 QNP 199 (498)
T ss_pred cCc
Confidence 655
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.16 E-value=7.5e-07 Score=81.64 Aligned_cols=194 Identities=13% Similarity=0.030 Sum_probs=80.7
Q ss_pred hhhcCCCCCceEEEEccCchh-----HHHHHhhhccccccccceEEEEEeCcc--ccccccCCcccccccccCCceEEee
Q 039808 51 LEVCNLTELSSLCFHFPEIKL-----LELFLQRCVAWNAQCLTEFRIVVGHDI--KNIVSRVPDAVAFDYNKQGKCLRFI 123 (358)
Q Consensus 51 ~~l~~l~~L~~L~~~~~~l~~-----l~~~~~~~~~~~~~~L~~l~i~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~ 123 (358)
..+..+++|+++.+....+.. ++..+. ..++++++.+...... ...+...+ ..+....+++.|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-----~~~~l~~l~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~ 89 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALR-----PQPSLKELCLSLNETGRIPRGLQSLL--QGLTKGCGLQELDLS 89 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-----hCCCceEEeccccccCCcchHHHHHH--HHHHhcCceeEEEcc
Confidence 345666679999997766532 322222 3344555544211000 00000000 123334466666665
Q ss_pred CCCC--ChHHHHhhcc---CccEEEeccCCCCCc--cCc--ccccCc-cCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 124 NGEN--IPDAVLQILA---CCTAFYLDNHLHINS--LSD--FGVRSI-NGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 124 ~~~~--~~~~~~~~l~---~L~~L~l~~~~~~~~--l~~--~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
++.- ........+. +++.|++.++ .+.. ... ..+..+ ++|++|++++|.................++|+
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 90 DNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred CCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 5432 1111222222 2666666665 3321 000 023444 66677777666432111000000122334566
Q ss_pred eeeccccccccc-ccccccCCCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecC
Q 039808 194 NLSIHHLWNLTH-ICEGSVPNGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDC 253 (358)
Q Consensus 194 ~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c 253 (358)
+|++.++.-... +.........+++|+.|++++|. +..... ...+..+++|+.|++++|
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC
Confidence 666665432110 00000011223466666666653 221111 112344566666666665
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.3e-06 Score=78.51 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=38.6
Q ss_pred hccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808 135 ILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN 213 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 213 (358)
.+.+++.|.+..| +++.-.-. .+..+|+|+.|.+..|..+. +... +...+..|++|++++-..+.. ... ...
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~---~~~i~~~L~~LdLs~N~li~~-~~~-~~~ 267 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIIL-IKAT---STKILQTLQELDLSNNNLIDF-DQG-YKV 267 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccc-eecc---hhhhhhHHhhccccCCccccc-ccc-ccc
Confidence 4556666666666 44421110 34456666666666653211 1011 123445566666655332221 110 112
Q ss_pred CcCccccEEeEecC
Q 039808 214 GSFARLRILSVHAC 227 (358)
Q Consensus 214 ~~~~~L~~L~l~~c 227 (358)
+.||.|+.|.+..|
T Consensus 268 ~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 268 GTLPGLNQLNLSST 281 (505)
T ss_pred ccccchhhhhcccc
Confidence 44555555555443
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.4e-06 Score=76.14 Aligned_cols=117 Identities=15% Similarity=0.015 Sum_probs=58.7
Q ss_pred cCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 137 ACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
.+|+.+.+..|.+++..... -+.++..|.+|+|+||....+.... ...+.-++|+.|.+++|...-.......-...
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 45667777777666543221 4678889999999999665543111 01233467777777776543221100000112
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI 256 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l 256 (358)
.|+|.+|++++|-.++.-.. ..+..++-|++|.++.|+.+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred CCceeeeccccccccCchHH-HHHHhcchheeeehhhhcCC
Confidence 34555555555544443100 11234444555555555443
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.7e-07 Score=79.10 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=118.0
Q ss_pred CCceEEeeCCCCCh---HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 116 QGKCLRFINGENIP---DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 116 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
.++.++++...-.. ..+.....+|+.|++.+..--+.+.. .+.+=.+|+.|+|+.|.++.+. ....-...+..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchh--HHHHHHHhhhhH
Confidence 46666665543111 12334456788888887733333332 5677789999999999887642 101113467899
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCcccc-CchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFV-FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT 271 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~ 271 (358)
.+|.+++|.-.... .......-=++|+.|++++|.+--.. -.......+|+|.+|++++|..++.-.. ..+.
T Consensus 263 ~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~------~~~~ 335 (419)
T KOG2120|consen 263 DELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF------QEFF 335 (419)
T ss_pred hhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH------HHHH
Confidence 99999999765542 11100112268999999998643221 1123557899999999999988875221 3567
Q ss_pred cCCCcceeccccccccccccCC-----CCCCccEEeeeCCcC
Q 039808 272 ALPRLKKLTLHYLPGLVTIWSS-----AWPSLEYVSFYDCPR 308 (358)
Q Consensus 272 ~l~~L~~L~l~~c~~L~~~~~~-----~~~~L~~L~i~~C~~ 308 (358)
.|+-|++|.++.|-.+- |.. ..|+|.+|++.||-.
T Consensus 336 kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 89999999999995332 221 789999999999853
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.88 E-value=5.5e-06 Score=68.60 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCC
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPK 174 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~ 174 (358)
.|+.|.+.++. .+...+...+++|+.|++.++ .+..+.+. .+..+++|+.|++.+|+-
T Consensus 65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp T--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred hhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 55666665553 333333445777888887777 66555443 567778888888877754
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=0.00012 Score=68.22 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=72.9
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
..+++.|++.+| .+..++.. ..+|++|.+++|..+..+++. ..++|++|.+.+|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~L----P~sLtsL~Lsnc~nLtsLP~~------LP~nLe~L~Ls~Cs~L~sL--------- 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVL----PNELTEITIENCNNLTTLPGS------IPEGLEKLTVCHCPEISGL--------- 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCC----CCCCcEEEccCCCCcccCCch------hhhhhhheEccCccccccc---------
Confidence 467778888877 66666531 236888888888777665432 2357888888887666543
Q ss_pred CccccEEeEecCCCccccCchhhhccC-CCccEEEEecCCccccccccccccccccccC-CCcceeccccccccccccCC
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFM-SNLEDLTVEDCPAIEEIISEGEIIDSGCTAL-PRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~ 293 (358)
.++|+.|++.. ..+..+ ..+ ++|+.|.+.+........ ....+ ++|+.|.+.+|..+. +|..
T Consensus 111 P~sLe~L~L~~-n~~~~L------~~LPssLk~L~I~~~n~~~~~~--------lp~~LPsSLk~L~Is~c~~i~-LP~~ 174 (426)
T PRK15386 111 PESVRSLEIKG-SATDSI------KNVPNGLTSLSINSYNPENQAR--------IDNLISPSLKTLSLTGCSNII-LPEK 174 (426)
T ss_pred ccccceEEeCC-CCCccc------ccCcchHhheeccccccccccc--------cccccCCcccEEEecCCCccc-Cccc
Confidence 14566676642 222211 122 255566654322111000 01123 357777776665442 2322
Q ss_pred CCCCccEEeeeCC
Q 039808 294 AWPSLEYVSFYDC 306 (358)
Q Consensus 294 ~~~~L~~L~i~~C 306 (358)
-..+|+.|++..+
T Consensus 175 LP~SLk~L~ls~n 187 (426)
T PRK15386 175 LPESLQSITLHIE 187 (426)
T ss_pred ccccCcEEEeccc
Confidence 3356666666554
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=1.6e-06 Score=79.06 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=79.9
Q ss_pred CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh
Q 039808 160 SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI 239 (358)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l 239 (358)
.+..|+.|..++|..+.+.+-+. -...-++|+.|.+++|..+......... .+.++|+.+++.+|....+.--....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhc
Confidence 45566777777766543211100 0123467777777777665543211111 23467777777777655543111223
Q ss_pred ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808 240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP 313 (358)
.+++.|+.|.++.|..+.+-.. -..+....+...|+.+++++||.+++-.-+ .+++|+.+++.+|....+=|
T Consensus 369 ~~C~~lr~lslshce~itD~gi--~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGI--RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred cCCchhccCChhhhhhhhhhhh--hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 4667777777777766543200 000112334556777777777766654443 56777777777776655544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.79 E-value=1.3e-05 Score=66.44 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCceEEeeCCCCCh-HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccce
Q 039808 116 QGKCLRFINGENIP-DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLEN 194 (358)
Q Consensus 116 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 194 (358)
+++.|.+.++.-.. ......+.+++.|++.++ .+..++ .+..+++|++|++++|. +..+.+. -...+|+|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~--~l~~L~~L~~L~L~~N~-I~~i~~~---l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLE--GLPGLPRLKTLDLSNNR-ISSISEG---LDKNLPNLQE 92 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS---S--T--T----TT--EEE--SS----S-CHH---HHHH-TT--E
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCC-CCcccc--CccChhhhhhcccCCCC-CCccccc---hHHhCCcCCE
Confidence 55666665543111 112224677888888888 777776 36778888888887763 3333111 0124677777
Q ss_pred eecccccccccccccccCCCcCccccEEeEecCCCcccc-CchhhhccCCCccEEEE
Q 039808 195 LSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFV-FSSFMIHFMSNLEDLTV 250 (358)
Q Consensus 195 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~l~~l~~L~~L~i 250 (358)
|.+.+. .+..+. .-.....+++|+.|++.++|-...- .....+..+|+|+.|+-
T Consensus 93 L~L~~N-~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNN-KISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS----SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCC-cCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777553 222211 1112335666777777665532210 11223455666666653
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00011 Score=68.58 Aligned_cols=134 Identities=20% Similarity=0.285 Sum_probs=85.7
Q ss_pred ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808 158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF 237 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 237 (358)
+..+++++.|+|++| .+..++ ...++|++|.+.+|..++.++.. -.++|++|.+.+|..+..++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccccccc---
Confidence 445688999999999 666553 12357999999999998776421 13689999999998777541
Q ss_pred hhccCCCccEEEEecCCccccccccccccccccccCC-CcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCC
Q 039808 238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALP-RLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGL 314 (358)
Q Consensus 238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~-~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~ 314 (358)
++|+.|++.. ..... +..+| +|+.|.+.++......... -.++|++|.|.+|..+. +|.
T Consensus 112 -----~sLe~L~L~~-n~~~~-----------L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~ 173 (426)
T PRK15386 112 -----ESVRSLEIKG-SATDS-----------IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE 173 (426)
T ss_pred -----cccceEEeCC-CCCcc-----------cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc
Confidence 3577888753 23222 23343 6888888543222111111 34799999999998653 454
Q ss_pred CCCCCCCeeEEEe
Q 039808 315 GSNLKHSVMEIKA 327 (358)
Q Consensus 315 ~~~~~~~L~~~~~ 327 (358)
.+. .+|+.+..
T Consensus 174 ~LP--~SLk~L~l 184 (426)
T PRK15386 174 KLP--ESLQSITL 184 (426)
T ss_pred ccc--ccCcEEEe
Confidence 322 34555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.67 E-value=9.6e-06 Score=71.17 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=31.1
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP 285 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~ 285 (358)
+.+.++|.+... .++.+ ..++.+=+|+.|++.+. .++.+- ....++.+|-|+.+.+.+.|
T Consensus 351 LGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ld-----eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSN-QIEELD-----EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhh-hHhhh---hhhHhhhhheecccccc-chhhHH-----HhcccccccHHHHHhhcCCC
Confidence 445566665542 33333 33455666666666653 222211 01256677777777776654
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=6.9e-05 Score=50.60 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=15.5
Q ss_pred ccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808 271 TALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC 306 (358)
Q Consensus 271 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C 306 (358)
..+++|+.|+++++ .++.++.. ++++|++|++++|
T Consensus 22 ~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444322 34444433 4444444444444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.3e-05 Score=72.12 Aligned_cols=208 Identities=16% Similarity=0.115 Sum_probs=103.3
Q ss_pred hcCccccEEEeeecCCCcceecccchhh--hhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCcccc
Q 039808 23 SRLHALKTLSIVVYPGDKRWYKDVKSVV--LEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKN 100 (358)
Q Consensus 23 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~ 100 (358)
+++.+|++..+.+++ ++... .....|++.+.|+++.+-+......+.-+. .+++|+.|.+..+-.
T Consensus 118 sn~kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e--qLp~Le~LNls~Nrl--- 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE--QLPSLENLNLSSNRL--- 184 (505)
T ss_pred hhHHhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH--hcccchhcccccccc---
Confidence 356666666666522 11111 345667777777765443332221111000 345555554421100
Q ss_pred ccccCCcccccccccCCceEEeeCCCCC---hHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE
Q 039808 101 IVSRVPDAVAFDYNKQGKCLRFINGENI---PDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET 177 (358)
Q Consensus 101 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~ 177 (358)
..+.+...-..+.++..|.+.+|.-. ..++...++++..|++..+..+. ....+...+..|++|+|+++..+..
T Consensus 185 --~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 185 --SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred --cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccc
Confidence 00000011123446777777776421 12445567888888888774221 1112456677888888888765542
Q ss_pred ecCCCCccccCCCccceeeccccccccccccccc----CCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808 178 VVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV----PNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE 251 (358)
Q Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~ 251 (358)
+.......||.|..|.+..+. +.++-..+. ....|++|++|.+...+- .....-.-+..+++|+.|.+.
T Consensus 262 ---~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 262 ---DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ---ccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhcc
Confidence 112235567888887776642 233211111 013578888888876542 221111233455666666543
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=1.7e-06 Score=78.88 Aligned_cols=171 Identities=14% Similarity=0.152 Sum_probs=97.4
Q ss_pred CccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCcc-ccCCCccceeecccccccccccccccCCCc
Q 039808 138 CCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELT-TVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 138 ~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
.++.|++++|.....-+.. ...++++++.|.+.+|..+.+. .... ....+.|+.+.+..|..++........ ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-EG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHH-Hh
Confidence 4666777776544332211 2456777777777777654421 1111 123567777777777776664333222 23
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccc-----ccc------c------ccc----cccccCC
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEII-----SEG------E------IID----SGCTALP 274 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~-----~~~------~------~~~----~~~~~l~ 274 (358)
+++|++|+++.|+.+..-.......+...++.+...+|..++.-. .+. + ..+ ....+..
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 577777777777777664344455566666666666665443210 000 0 000 0122356
Q ss_pred CcceeccccccccccccCC----CCCCccEEeeeCCcCCCcc
Q 039808 275 RLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKNI 312 (358)
Q Consensus 275 ~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~l 312 (358)
+|+.+..++|..+.+.+.. +.++|+.+.+.+|..+...
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 7788888888776665544 7788888888888776554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.46 E-value=0.00028 Score=47.56 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=37.0
Q ss_pred CccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccc
Q 039808 138 CCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHL 200 (358)
Q Consensus 138 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 200 (358)
+++.|++.++ .+..++...+.++++|++|++++| .+..++... ...+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~---f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA---FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTT---TTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH---HcCCCCCCEEeCcCC
Confidence 5677777777 777776666777777777777765 444553332 445566666666554
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=6.4e-05 Score=72.86 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=69.3
Q ss_pred ccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecC-CCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808 136 LACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISEC-PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN 213 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 213 (358)
.+.++.+.+.++..+..... .....+++|++|+++.| .................++|+.|.+.++..+...-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~- 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA- 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH-
Confidence 46677777777765554221 13566778888888763 2222111111111334577777877777654443211111
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI 256 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l 256 (358)
...++|+.|.+.+|..+++.+-..+...+++|++|+|+.|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1256788888777877666544455667778888888887776
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.78 E-value=0.00037 Score=70.14 Aligned_cols=130 Identities=18% Similarity=0.104 Sum_probs=61.4
Q ss_pred cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808 162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF 241 (358)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~ 241 (358)
.+|++|+|++...... ++...-...||+|++|.+.+..-...- ...-..+||+|+.|+|+++ .++.+ ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGT-NISNL---SGISR 193 (699)
T ss_pred HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCC-CccCc---HHHhc
Confidence 3666666655322210 111111234677777777653221110 0000135677777777764 45544 44566
Q ss_pred CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccc-----cCC---CCCCccEEeeeC
Q 039808 242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTI-----WSS---AWPSLEYVSFYD 305 (358)
Q Consensus 242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~---~~~~L~~L~i~~ 305 (358)
+.+|+.|.+.+..--.. . .=.....+.+|+.|+++.-.+...- +.+ .+|.|+.|+.+|
T Consensus 194 LknLq~L~mrnLe~e~~-~-----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESY-Q-----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cccHHHHhccCCCCCch-h-----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 66666666554321110 0 0012446677777777543222211 111 567777777665
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.70 E-value=0.00063 Score=61.13 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=17.9
Q ss_pred CCCcceeccccccccccccCC-------CCCCccEEeeeCCc
Q 039808 273 LPRLKKLTLHYLPGLVTIWSS-------AWPSLEYVSFYDCP 307 (358)
Q Consensus 273 l~~L~~L~l~~c~~L~~~~~~-------~~~~L~~L~i~~C~ 307 (358)
+|+|+.|.+.++ .++.-... ..|.|++|.+++|.
T Consensus 269 ~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 269 APSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 666666666554 22211111 45666666666664
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.55 E-value=0.00032 Score=63.97 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808 132 VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV 211 (358)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 211 (358)
-++.+++|++|.+.++ .++.+.+.++.+...+++|.+..+ +++.+.+.+ ...+..|+.|++.+-. ++.+ .+.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~---f~~ls~L~tL~L~~N~-it~~--~~~ 340 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSGM---FQGLSGLKTLSLYDNQ-ITTV--APG 340 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHh---hhccccceeeeecCCe-eEEE--ecc
Confidence 3566888888888888 788887778888888888888776 455543332 4556778888887743 3332 122
Q ss_pred CCCcCccccEEeEecC
Q 039808 212 PNGSFARLRILSVHAC 227 (358)
Q Consensus 212 ~~~~~~~L~~L~l~~c 227 (358)
.+....+|.+|.+-..
T Consensus 341 aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSN 356 (498)
T ss_pred cccccceeeeeehccC
Confidence 3344566777777543
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.48 E-value=7.2e-05 Score=73.07 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=61.2
Q ss_pred ccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808 110 AFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF 189 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 189 (358)
++..++.++.|++..+.-........+++|++|+++.+ .+..++.+....+. |+.|.+++|. ++.+.+ +..+
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g-----ie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG-----IENL 253 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhhhh-----HHhh
Confidence 44445566777776665333345566788888888877 77777765555555 8888887763 332211 3456
Q ss_pred CccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808 190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP 228 (358)
Q Consensus 190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 228 (358)
.+|+.|+++..--.++--..+ ...+..|+.|.+.+.|
T Consensus 254 ksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 667777665422111111111 1244566677766654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.35 E-value=0.00063 Score=60.02 Aligned_cols=85 Identities=21% Similarity=0.119 Sum_probs=45.9
Q ss_pred cccccCCceEEeeCCC-CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808 111 FDYNKQGKCLRFINGE-NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF 189 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 189 (358)
+..+.+|..|+++++. .-..+....+.+++.|.+..+ .+.+++ .++++-+|..|++++| +++.+ +. -..+..+
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS--GL~KLYSLvnLDl~~N-~Ie~l-de-V~~IG~L 398 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS--GLRKLYSLVNLDLSSN-QIEEL-DE-VNHIGNL 398 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh--hhHhhhhheecccccc-chhhH-HH-hcccccc
Confidence 3344455666665543 111222334667777777666 555555 4667777777777765 33332 11 1124566
Q ss_pred Cccceeeccccc
Q 039808 190 PSLENLSIHHLW 201 (358)
Q Consensus 190 ~~L~~L~l~~~~ 201 (358)
|+|+.+.+.+.+
T Consensus 399 PCLE~l~L~~NP 410 (490)
T KOG1259|consen 399 PCLETLRLTGNP 410 (490)
T ss_pred cHHHHHhhcCCC
Confidence 677766665543
No 43
>PLN03150 hypothetical protein; Provisional
Probab=96.32 E-value=0.0074 Score=60.67 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=65.5
Q ss_pred cceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808 192 LENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT 271 (358)
Q Consensus 192 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~ 271 (358)
++.|.+.++.-...+ +...+.+++|+.|+++++. +....| ..++.+++|+.|+++++.--..++ ..++
T Consensus 420 v~~L~L~~n~L~g~i---p~~i~~L~~L~~L~Ls~N~-l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-------~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFI---PNDISKLRHLQSINLSGNS-IRGNIP-PSLGSITSLEVLDLSYNSFNGSIP-------ESLG 487 (623)
T ss_pred EEEEECCCCCccccC---CHHHhCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECCCCCCCCCCc-------hHHh
Confidence 555666554322222 2234567788888887764 433233 245778888888888775544555 3466
Q ss_pred cCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808 272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP 313 (358)
.+++|+.|+++++.--..+|.. ...++..+++.+++.+-..|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 7788888888766433345544 23456677777766555544
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.30 E-value=0.0048 Score=58.42 Aligned_cols=99 Identities=20% Similarity=0.296 Sum_probs=49.5
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.+..|.+.++. .++.. ......++.+.+.++.....+. .+.++.++..+.+.++. +...+.. ...+++++
T Consensus 187 ~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~-~~~~~~~----~~~l~~l~ 258 (394)
T COG4886 187 NLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNK-LEDLPES----IGNLSNLE 258 (394)
T ss_pred hhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCce-eeeccch----hccccccc
Confidence 45555555543 22221 1234456666666653222222 35666666666654442 2221122 44556677
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHAC 227 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 227 (358)
+|.+++.. +..++. .+.+.+++.|++.+.
T Consensus 259 ~L~~s~n~-i~~i~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 259 TLDLSNNQ-ISSISS----LGSLTNLRELDLSGN 287 (394)
T ss_pred eecccccc-cccccc----ccccCccCEEeccCc
Confidence 77776643 233211 345677777777664
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.27 E-value=0.009 Score=60.03 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=71.3
Q ss_pred CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808 163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM 242 (358)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l 242 (358)
.++.|+++++.-...++.. +..+++|+.|+++++.-...+ +...+.+++|+.|+++++. +....| ..++.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~i---P~~~~~l~~L~~LdLs~N~-lsg~iP-~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNI---PPSLGSITSLEVLDLSYNS-FNGSIP-ESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcC---ChHHhCCCCCCEEECCCCC-CCCCCc-hHHhcC
Confidence 3677888876543344333 567889999999886543343 2335678899999998874 443334 356789
Q ss_pred CCccEEEEecCCcccccccccccccccccc-CCCcceecccccccccc
Q 039808 243 SNLEDLTVEDCPAIEEIISEGEIIDSGCTA-LPRLKKLTLHYLPGLVT 289 (358)
Q Consensus 243 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~ 289 (358)
++|+.|+++++.--..+| ..++. +.++..+.+.+++.+..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVP-------AALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCEEECcCCcccccCC-------hHHhhccccCceEEecCCccccC
Confidence 999999999876554555 12222 33556677766655443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0013 Score=58.09 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=51.4
Q ss_pred ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC-CcCccccEEeEecCCCccccCch
Q 039808 158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN-GSFARLRILSVHACPKLKFVFSS 236 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~ 236 (358)
+..+|.+++|+++.|.- ..+-.+.......-+.+++|+...|.. ..|...... .-||++..+.+..|| ++..-..
T Consensus 142 l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e 217 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE 217 (418)
T ss_pred hhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCc-ccchhhc
Confidence 55666666666665521 111111111112223455555555432 112211111 136777777776665 2211111
Q ss_pred hhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccccc
Q 039808 237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW 291 (358)
Q Consensus 237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 291 (358)
.....+|.+-.|.++.. ++.+..+. .....||+|..|.+.+.|-...+.
T Consensus 218 k~se~~p~~~~LnL~~~-~idswasv-----D~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGAN-NIDSWASV-----DALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ccCCCCCcchhhhhccc-ccccHHHH-----HHHcCCchhheeeccCCccccccc
Confidence 11122333333333321 22211100 235566777777766665555443
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.11 E-value=0.0064 Score=57.57 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=47.7
Q ss_pred cCccEEEeccCCCCCccCcccccCcc-CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSIN-GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
+.++.|.+.+. .+..++. ....+. +|++|+++++ .+..++.. ...+++|+.|.+.++.- ..+ +...+.
T Consensus 116 ~~l~~L~l~~n-~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~~~----~~~l~~L~~L~l~~N~l-~~l---~~~~~~ 184 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPP-LIGLLKSNLKELDLSDN-KIESLPSP----LRNLPNLKNLDLSFNDL-SDL---PKLLSN 184 (394)
T ss_pred cceeEEecCCc-ccccCcc-ccccchhhccccccccc-chhhhhhh----hhccccccccccCCchh-hhh---hhhhhh
Confidence 45566666555 5555553 133332 6666666654 23333212 34556666666655432 222 111113
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecC
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC 253 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c 253 (358)
.+.|+.|++++. ++..+++ ......+|++|.+++.
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~--~~~~~~~L~~l~~~~N 219 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPP--EIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhheeccCC-ccccCch--hhhhhhhhhhhhhcCC
Confidence 456666666553 3444311 1122333555555544
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0024 Score=64.36 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=83.7
Q ss_pred CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccc
Q 039808 189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDS 268 (358)
Q Consensus 189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 268 (358)
-.+|++|+|++-..+..-|-... ...||+|+.|.+.+-.-...-+ .....++|+|..|+|+++ +++.+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~ki-g~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~T-nI~nl~-------- 189 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKI-GTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGT-NISNLS-------- 189 (699)
T ss_pred HHhhhhcCccccchhhccHHHHH-hhhCcccceEEecCceecchhH-HHHhhccCccceeecCCC-CccCcH--------
Confidence 46899999988555544342221 1358999999998743222111 134578999999999996 565554
Q ss_pred ccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcCCCcc--C----CCCCCCCCeeEEEec
Q 039808 269 GCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKNI--G----LGSNLKHSVMEIKAE 328 (358)
Q Consensus 269 ~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~l--P----~~~~~~~~L~~~~~~ 328 (358)
+.+.+.+|+.|.+.+.+ ++....- .+..|+.|+|+.=++...- . +...-+|.|+.++|.
T Consensus 190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 57889999999998763 3332211 7999999999985433322 1 112236788888773
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.98 E-value=0.0055 Score=38.19 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=17.6
Q ss_pred cccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh
Q 039808 27 ALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL 71 (358)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~ 71 (358)
+||+|++++ +.+ +.++.++++|++|++|++..+.++.
T Consensus 2 ~L~~L~l~~-N~i-------~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSN-NQI-------TDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETS-SS--------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccC-CCC-------cccCchHhCCCCCCEEEecCCCCCC
Confidence 455666655 222 2233345566666666665444443
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.83 E-value=0.00051 Score=65.51 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=32.5
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
+..++.+++..+ .+..++. .+..+ -|+.|.++++ ++..+++. +...+.|..|+.+.+. +..+ +...+.
T Consensus 120 L~~lt~l~ls~N-qlS~lp~-~lC~l-pLkvli~sNN-kl~~lp~~----ig~~~tl~~ld~s~ne-i~sl---psql~~ 187 (722)
T KOG0532|consen 120 LEALTFLDLSSN-QLSHLPD-GLCDL-PLKVLIVSNN-KLTSLPEE----IGLLPTLAHLDVSKNE-IQSL---PSQLGY 187 (722)
T ss_pred hhHHHHhhhccc-hhhcCCh-hhhcC-cceeEEEecC-ccccCCcc----cccchhHHHhhhhhhh-hhhc---hHHhhh
Confidence 444444555444 4444433 12222 3455555443 33334333 2344445555444432 1221 222334
Q ss_pred CccccEEeEec
Q 039808 216 FARLRILSVHA 226 (358)
Q Consensus 216 ~~~L~~L~l~~ 226 (358)
+.+|+.|.+.+
T Consensus 188 l~slr~l~vrR 198 (722)
T KOG0532|consen 188 LTSLRDLNVRR 198 (722)
T ss_pred HHHHHHHHHhh
Confidence 44555555544
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.00085 Score=55.87 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=51.0
Q ss_pred ccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccc
Q 039808 186 TVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIE 257 (358)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~ 257 (358)
+..+++++.|.+.+|..+...+..... +-+++|+.|+|++|+++++.+- ..+..+++|+.|.|.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 345677888888888888775544432 2578999999999999887533 356788888888888776553
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.50 E-value=0.0016 Score=63.02 Aligned_cols=123 Identities=23% Similarity=0.231 Sum_probs=77.8
Q ss_pred ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccc-ccccccc--ccccCCCcCccccEEeEecCCCccccC
Q 039808 158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHL-WNLTHIC--EGSVPNGSFARLRILSVHACPKLKFVF 234 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~ 234 (358)
...+++|+.|.+..|..+.... ........+.|++|.+.++ ....... .... ....++|+.+++..|..+++..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchh
Confidence 3457899999999887766421 0111345789999999873 2222111 1111 1234889999999988777664
Q ss_pred chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808 235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV 288 (358)
Q Consensus 235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 288 (358)
-......+++|+.|.+..|..+..-. ...-...+++|+.|+++.|..++
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~g-----l~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEG-----LVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhH-----HHHHHHhcCcccEEeeecCccch
Confidence 44455568899999988888753311 11224557788888888777653
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.23 E-value=0.025 Score=35.16 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.2
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 173 (358)
++|+.|++.++ .+..++. .+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCC
Confidence 46788888888 7777774 37889999999998873
No 54
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.35 E-value=0.029 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=9.6
Q ss_pred CCccEEeeeCCcCCCccC
Q 039808 296 PSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 296 ~~L~~L~i~~C~~L~~lP 313 (358)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467778888876 77766
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.011 Score=49.38 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=45.5
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV 288 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 288 (358)
.++.++.|.+.+|..+.+.....+-+-.++|+.|+|++|+.+.+-.- ..+..|++|+.|.+.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------HHHHHhhhhHHHHhcCchhhh
Confidence 45778888888888777653333344567888888888888765220 135567788888887765444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.63 E-value=0.12 Score=43.51 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=49.6
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTT 186 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 186 (358)
.+..+..|.+|.+..+. .+...+..+++++..|.+.++ .+..+.+. .+..++.|++|.+-+++.-. -..-..+.+
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl 136 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVL 136 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhc-ccCceeEEE
Confidence 33444566666665543 333445566777777777776 55554443 56677777777776654322 112222234
Q ss_pred cCCCccceeecccc
Q 039808 187 VIFPSLENLSIHHL 200 (358)
Q Consensus 187 ~~l~~L~~L~l~~~ 200 (358)
..+|+|+.|++.+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 55666666666543
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.63 E-value=0.019 Score=55.22 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=15.5
Q ss_pred ccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808 139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 173 (358)
|..|++..+ .+..++. ++.+|+.|++|.+.+|+
T Consensus 213 Li~lDfScN-kis~iPv-~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSCN-KISYLPV-DFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeecccC-ceeecch-hhhhhhhheeeeeccCC
Confidence 334444333 4444443 35555555555555443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.11 Score=46.29 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=62.5
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--- 293 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--- 293 (358)
+.+++++...|+-..-.-......-+|++..+.+.+|+ ++... .+.+...||.+..|.+.. .++.+|..-
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s-----~ek~se~~p~~~~LnL~~-~~idswasvD~L 245 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES-----SEKGSEPFPSLSCLNLGA-NNIDSWASVDAL 245 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh-----hcccCCCCCcchhhhhcc-cccccHHHHHHH
Confidence 35566666555422211011222357788888877764 22222 113455677777777743 356666543
Q ss_pred -CCCCccEEeeeCCcCCCccCCC------CCCCCCeeEEEe
Q 039808 294 -AWPSLEYVSFYDCPRLKNIGLG------SNLKHSVMEIKA 327 (358)
Q Consensus 294 -~~~~L~~L~i~~C~~L~~lP~~------~~~~~~L~~~~~ 327 (358)
.|++|..|.+.+.|-...+--+ ++.++.++.+.|
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 8999999999999877776443 245677777766
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.67 E-value=0.064 Score=27.77 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.1
Q ss_pred CccEEeeeCCcCCCccCCCCC
Q 039808 297 SLEYVSFYDCPRLKNIGLGSN 317 (358)
Q Consensus 297 ~L~~L~i~~C~~L~~lP~~~~ 317 (358)
+|++|++++| +++.+|....
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 5788888888 6778887654
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.94 E-value=0.023 Score=51.42 Aligned_cols=163 Identities=16% Similarity=0.103 Sum_probs=78.2
Q ss_pred cCccEEEeccCCCCCc-----cCcccccCccCCcEEEeecCCCceEecCCC----------CccccCCCccceeeccccc
Q 039808 137 ACCTAFYLDNHLHINS-----LSDFGVRSINGLKFCIISECPKIETVVDGK----------ELTTVIFPSLENLSIHHLW 201 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~~l~~L~~L~l~~~~ 201 (358)
++|+.++++++ .+.. +.+ -+..+..|++|.+.+|. +...-+.. ......-+.|+.+...+.
T Consensus 92 ~~L~~ldLSDN-A~G~~g~~~l~~-ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 92 PKLQKLDLSDN-AFGPKGIRGLEE-LLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred CceeEeecccc-ccCccchHHHHH-HHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 36788888766 3221 222 24567788888887773 32211110 011223356666655442
Q ss_pred ccccccccc--cCCCcCccccEEeEecCCCccc-c-CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcc
Q 039808 202 NLTHICEGS--VPNGSFARLRILSVHACPKLKF-V-FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLK 277 (358)
Q Consensus 202 ~l~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~-l-~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~ 277 (358)
.++...... ..+...+.|+.+.+....--.. + .....+.++++|+.|++.+.---.+-. .........+|.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLR 244 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchhe
Confidence 121110000 0012235666666655321111 0 001124567778888777653221100 00113456677788
Q ss_pred eeccccccccccccCC--------CCCCccEEeeeCCc
Q 039808 278 KLTLHYLPGLVTIWSS--------AWPSLEYVSFYDCP 307 (358)
Q Consensus 278 ~L~l~~c~~L~~~~~~--------~~~~L~~L~i~~C~ 307 (358)
.|++.+| .++.=... ..|+|+.+.+.+|.
T Consensus 245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred eeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 8888777 34432221 56778888777763
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.53 E-value=0.01 Score=58.60 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.2
Q ss_pred cCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH
Q 039808 24 RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL 74 (358)
Q Consensus 24 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~ 74 (358)
=++.||.|+|++ +.+. ....++.|++|++|++.++.+..+|.
T Consensus 185 ll~ale~LnLsh-Nk~~--------~v~~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 185 LLPALESLNLSH-NKFT--------KVDNLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred HHHHhhhhccch-hhhh--------hhHHHHhcccccccccccchhccccc
Confidence 356677777776 3321 12357777777777777777766653
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.30 E-value=0.56 Score=36.26 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=29.0
Q ss_pred cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808 157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS 236 (358)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 236 (358)
++.++.+|+.+.+.+ .++.+.... ....++|+++.+.+ .+..+... .....++++.+.+.+ .+..+..
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~--~~~~i~~~--~F~~~~~l~~i~~~~--~~~~i~~- 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENA---FSNCTSLKSINFPN--NLTSIGDN--AFSNCKSLESITFPN--NLKSIGD- 74 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESS--TTSCE-TT--TTTT-TT-EEEEETS--TT-EE-T-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhh---cccccccccccccc--ccccccee--eeecccccccccccc--ccccccc-
Confidence 455555566655542 333342221 22334455555533 23332111 122333455555533 2222221
Q ss_pred hhhccCCCccEEEEe
Q 039808 237 FMIHFMSNLEDLTVE 251 (358)
Q Consensus 237 ~~l~~l~~L~~L~i~ 251 (358)
..+..+++|+.+.+.
T Consensus 75 ~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TTECEEEET
T ss_pred ccccccccccccccC
Confidence 233445666666653
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.18 E-value=0.23 Score=41.72 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=54.7
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF 216 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 216 (358)
.+...+++.++ ++..+.. +..++.|.+|.+.+| ++..+-+. -...+|+|+.|.+.+-. +..+-.- .+.-.+
T Consensus 42 d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~---L~~~~p~l~~L~LtnNs-i~~l~dl-~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN-RITRIDPD---LDTFLPNLKTLILTNNS-IQELGDL-DPLASC 112 (233)
T ss_pred cccceeccccc-chhhccc--CCCccccceEEecCC-cceeeccc---hhhhccccceEEecCcc-hhhhhhc-chhccC
Confidence 34455555555 5555442 566677777777665 34444221 02345677777776632 2221100 112346
Q ss_pred ccccEEeEecCCCccc-cCchhhhccCCCccEEEEec
Q 039808 217 ARLRILSVHACPKLKF-VFSSFMIHFMSNLEDLTVED 252 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~-l~~~~~l~~l~~L~~L~i~~ 252 (358)
|.|++|.+-+.+--.. -....++..+|+|+.|+..+
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6777777766542221 01112345677777777654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.95 E-value=0.13 Score=44.71 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=39.7
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-- 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-- 293 (358)
+|+|++|.++....-....-...+..+|+|++|.+++. +++.+... .....+++|..|++.+|+..+.-...
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl-----~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTL-----RPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccccccc-----chhhhhcchhhhhcccCCccccccHHHH
Confidence 45555555554321111111122344566666666653 22221100 13445566667777666544411111
Q ss_pred ---CCCCccEEeeeCC
Q 039808 294 ---AWPSLEYVSFYDC 306 (358)
Q Consensus 294 ---~~~~L~~L~i~~C 306 (358)
.+++|++|+-..+
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 4666766665554
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.02 E-value=0.11 Score=49.67 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=57.3
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI 101 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 101 (358)
++.+.+|++|++.+ +.+++. ...+..+++|++|+++++.++.+... . .+..|+.|.+. ++.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i-------~~~l~~~~~L~~L~ls~N~I~~i~~l-~-----~l~~L~~L~l~-~N~---- 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKI-------ENLLSSLVNLQVLDLSFNKITKLEGL-S-----TLTLLKELNLS-GNL---- 151 (414)
T ss_pred cccccceeeeeccc-cchhhc-------ccchhhhhcchheeccccccccccch-h-----hccchhhheec-cCc----
Confidence 56778888888887 332211 11266788888888887777666432 1 34445555541 111
Q ss_pred cccCCcccccccccCCceEEeeCCCCChHHH--HhhccCccEEEeccCCCCCcc
Q 039808 102 VSRVPDAVAFDYNKQGKCLRFINGENIPDAV--LQILACCTAFYLDNHLHINSL 153 (358)
Q Consensus 102 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~l 153 (358)
++.+. .+..+..+..+.+.++....... ...+.+++.+.+.++ .+..+
T Consensus 152 i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i 201 (414)
T KOG0531|consen 152 ISDIS---GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREI 201 (414)
T ss_pred chhcc---CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcc
Confidence 12222 22224455555555554222222 355667777777666 44333
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.32 E-value=0.052 Score=47.82 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=29.7
Q ss_pred ceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 118 KCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
+.|++-++.-.-..+-..++.++.|.++-+ .++++. ++..|.+|++|.+..|
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~--pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLA--PLQRCTRLKELYLRKN 73 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeecc-ccccch--hHHHHHHHHHHHHHhc
Confidence 334443443222244455677777777666 566655 3667777777777654
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.13 E-value=0.16 Score=48.49 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=70.4
Q ss_pred cCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccc
Q 039808 24 RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVS 103 (358)
Q Consensus 24 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~ 103 (358)
.+..++.+.+.. +. .......+..+++|+.+.+..+.++.+...+. .+.+|+.+.+ +.+
T Consensus 70 ~l~~l~~l~l~~-n~-------i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-----~~~~L~~L~l---s~N----- 128 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NL-------IAKILNHLSKLKSLEALDLYDNKIEKIENLLS-----SLVNLQVLDL---SFN----- 128 (414)
T ss_pred HhHhHHhhccch-hh-------hhhhhcccccccceeeeeccccchhhcccchh-----hhhcchheec---ccc-----
Confidence 466777776554 11 11123347888999999998888877754223 4566666665 222
Q ss_pred cCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCC
Q 039808 104 RVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECP 173 (358)
Q Consensus 104 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 173 (358)
.+.++..+..+..|+.|.+.++.-........++.++.+++.++ .+..+.. . +..+.+++.+++.++.
T Consensus 129 ~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 129 KITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 11122233444446666665554221111223666777777666 5555542 1 3666777777776653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=0.099 Score=46.11 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=35.0
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--- 293 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--- 293 (358)
.+.++|+.++| .+.++ .+...++.|+.|.++-. +++.+. .+..+++|+.|++... .+.++.+-
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~--------pl~rCtrLkElYLRkN-~I~sldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA--------PLQRCTRLKELYLRKN-CIESLDELEYL 84 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch--------hHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 34555555555 24444 34455566666655532 333222 2344455555555332 23333221
Q ss_pred -CCCCccEEeeeCCc
Q 039808 294 -AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 -~~~~L~~L~i~~C~ 307 (358)
++|+|+.|.+...|
T Consensus 85 knlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENP 99 (388)
T ss_pred hcCchhhhHhhccCC
Confidence 45555555555443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.75 E-value=0.58 Score=40.86 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=58.2
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecC--CccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC--PAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
|..|..+.+.++. ++.+ .-+..+|+|+.|.+++. .-...+. .-...+|+|+++++++. +++.+..-
T Consensus 42 ~~~le~ls~~n~g-ltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~-------vl~e~~P~l~~l~ls~N-ki~~lstl 109 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTL---TNFPKLPKLKKLELSDNYRRVSGGLE-------VLAEKAPNLKVLNLSGN-KIKDLSTL 109 (260)
T ss_pred ccchhhhhhhccc-eeec---ccCCCcchhhhhcccCCcccccccce-------ehhhhCCceeEEeecCC-cccccccc
Confidence 4455555555543 2222 22357889999999876 2222221 23455699999999875 55543332
Q ss_pred ----CCCCccEEeeeCCcCCCccCCC----CCCCCCeeEE
Q 039808 294 ----AWPSLEYVSFYDCPRLKNIGLG----SNLKHSVMEI 325 (358)
Q Consensus 294 ----~~~~L~~L~i~~C~~L~~lP~~----~~~~~~L~~~ 325 (358)
.+.+|..|++.+|+-.+ +-.- ..-+++|+.+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYL 148 (260)
T ss_pred chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccc
Confidence 78889999999998443 2111 1125677766
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.24 E-value=0.93 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=11.2
Q ss_pred CCCccEEeeeCCcCCC
Q 039808 295 WPSLEYVSFYDCPRLK 310 (358)
Q Consensus 295 ~~~L~~L~i~~C~~L~ 310 (358)
+++|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677777777777654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.40 E-value=7.3 Score=29.81 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCC
Q 039808 150 INSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPK 229 (358)
Q Consensus 150 ~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 229 (358)
+..+...++.++.+|+.+.+.. .+..+.+.. ....++++++.+.+ .+..+.. ......++|+.+.+.. .
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~--~~~~i~~--~~F~~~~~l~~i~~~~--~ 91 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN--NLKSIGD--NAFSNCTNLKNIDIPS--N 91 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--TT-EE-T--TTTTT-TTECEEEETT--T
T ss_pred eeEeChhhcccccccccccccc--cccccceee---eecccccccccccc--ccccccc--ccccccccccccccCc--c
Confidence 3444444455555566665544 233332221 22333455555533 2222211 1122345566666532 2
Q ss_pred ccccCchhhhccCCCccEEEEe
Q 039808 230 LKFVFSSFMIHFMSNLEDLTVE 251 (358)
Q Consensus 230 l~~l~~~~~l~~l~~L~~L~i~ 251 (358)
+..+.. ..+... +|+.+.+.
T Consensus 92 ~~~i~~-~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 92 ITEIGS-SSFSNC-NLKEINIP 111 (129)
T ss_dssp -BEEHT-TTTTT--T--EEE-T
T ss_pred ccEEch-hhhcCC-CceEEEEC
Confidence 333322 233444 66666554
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=74.85 E-value=0.82 Score=36.20 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=39.5
Q ss_pred ceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH
Q 039808 7 VEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75 (358)
Q Consensus 7 L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~ 75 (358)
|...+|++ +.+|+.+..+++...+|++++ ++...++.++..++-|+.++++++.+...|..
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~--------neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLAN--------NEISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcch--------hhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 33445554 446666656666677777766 33345567788888888888887777666653
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=67.62 E-value=3.7 Score=36.48 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=28.0
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCch
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIK 70 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~ 70 (358)
+-++++|+..++++ +.|..- .......-|+.-..|++|.++.+.+.
T Consensus 88 Llkcp~l~~v~LSD-NAfg~~--~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSD-NAFGSE--FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccc-cccCcc--cchHHHHHHhcCCCceeEEeecCCCC
Confidence 45788899999988 333100 00112334677788888888776553
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=67.34 E-value=4 Score=21.67 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=14.8
Q ss_pred CCCccEEeeeCCcCCCccCCCC
Q 039808 295 WPSLEYVSFYDCPRLKNIGLGS 316 (358)
Q Consensus 295 ~~~L~~L~i~~C~~L~~lP~~~ 316 (358)
+++|+.|++.++ .++.+|.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 367788888776 577777653
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=67.34 E-value=4 Score=21.67 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=14.8
Q ss_pred CCCccEEeeeCCcCCCccCCCC
Q 039808 295 WPSLEYVSFYDCPRLKNIGLGS 316 (358)
Q Consensus 295 ~~~L~~L~i~~C~~L~~lP~~~ 316 (358)
+++|+.|++.++ .++.+|.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 367788888776 577777653
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.30 E-value=0.37 Score=38.09 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=14.3
Q ss_pred CCcceeccccccccccccCC--CCCCccEEeeeCC
Q 039808 274 PRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDC 306 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C 306 (358)
|-..++++.+ +++.++|.+ .++.|+.+.++..
T Consensus 77 ~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 77 PTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred chhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 3444444432 244444444 4455555554443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=42.83 E-value=16 Score=18.80 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.2
Q ss_pred CCCccEEeeeCCc
Q 039808 295 WPSLEYVSFYDCP 307 (358)
Q Consensus 295 ~~~L~~L~i~~C~ 307 (358)
+++|++|++++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3577777777774
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.10 E-value=18 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=14.5
Q ss_pred CCccEEeeeCCcCCCccCCC
Q 039808 296 PSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 296 ~~L~~L~i~~C~~L~~lP~~ 315 (358)
++|+.|.+++. +|+.+|+.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPEL 20 (26)
T ss_pred cccceeecCCC-ccccCccc
Confidence 57888888775 58888864
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=31.19 E-value=40 Score=18.14 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=6.8
Q ss_pred CccccEEEeee
Q 039808 25 LHALKTLSIVV 35 (358)
Q Consensus 25 L~~L~~L~l~~ 35 (358)
+.+|++|++++
T Consensus 1 L~~L~~L~L~~ 11 (26)
T smart00365 1 LTNLEELDLSQ 11 (26)
T ss_pred CCccCEEECCC
Confidence 34566676665
Done!