Query 039808
Match_columns 358
No_of_seqs 157 out of 1685
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 23:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 2.1E-18 7.3E-23 157.8 15.9 189 134-338 124-319 (328)
2 2id5_A Lingo-1, leucine rich r 99.8 7.8E-18 2.7E-22 161.8 18.1 287 4-326 31-326 (477)
3 4fmz_A Internalin; leucine ric 99.8 9.8E-18 3.3E-22 154.4 17.6 272 4-325 43-338 (347)
4 2id5_A Lingo-1, leucine rich r 99.7 2.6E-17 8.8E-22 158.2 17.2 268 3-307 54-331 (477)
5 3o6n_A APL1; leucine-rich repe 99.7 1.3E-17 4.5E-22 156.1 14.0 282 4-327 44-346 (390)
6 3v47_A TOLL-like receptor 5B a 99.7 1.2E-17 4.2E-22 159.4 12.1 124 190-327 275-402 (455)
7 3v47_A TOLL-like receptor 5B a 99.7 1.1E-16 3.9E-21 152.6 18.3 135 162-313 275-412 (455)
8 3t6q_A CD180 antigen; protein- 99.7 1.3E-16 4.6E-21 157.7 19.3 33 3-35 55-90 (606)
9 4ecn_A Leucine-rich repeat pro 99.7 1.7E-16 5.7E-21 161.9 19.5 302 3-327 446-813 (876)
10 3rgz_A Protein brassinosteroid 99.7 2.3E-17 7.7E-22 167.8 12.8 80 240-326 463-544 (768)
11 4fmz_A Internalin; leucine ric 99.7 1.4E-16 4.7E-21 146.7 16.7 259 22-328 40-319 (347)
12 4fcg_A Uncharacterized protein 99.7 7.4E-17 2.5E-21 147.6 14.6 225 5-281 81-308 (328)
13 3rgz_A Protein brassinosteroid 99.7 3.5E-17 1.2E-21 166.4 13.2 32 4-35 317-352 (768)
14 4eco_A Uncharacterized protein 99.7 9.9E-17 3.4E-21 159.6 16.0 301 3-327 204-573 (636)
15 1o6v_A Internalin A; bacterial 99.7 1.2E-15 4E-20 146.3 22.7 198 111-334 173-389 (466)
16 1o6v_A Internalin A; bacterial 99.7 4.9E-16 1.7E-20 149.0 19.8 269 4-327 67-360 (466)
17 3oja_B Anopheles plasmodium-re 99.7 1.1E-16 3.6E-21 158.3 15.2 282 4-327 50-352 (597)
18 3t6q_A CD180 antigen; protein- 99.7 4.9E-17 1.7E-21 160.8 12.6 287 6-327 255-554 (606)
19 3o6n_A APL1; leucine-rich repe 99.7 3.8E-16 1.3E-20 146.2 17.6 261 4-307 68-350 (390)
20 2z7x_B TOLL-like receptor 1, v 99.7 3.2E-16 1.1E-20 152.2 16.5 134 188-327 322-475 (520)
21 2z81_A CD282 antigen, TOLL-lik 99.7 1.9E-16 6.5E-21 154.7 14.5 54 272-327 449-504 (549)
22 4eco_A Uncharacterized protein 99.7 3.7E-16 1.3E-20 155.5 15.7 255 49-327 198-520 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.9E-16 1.7E-20 152.4 16.2 52 274-327 450-504 (562)
24 3vq2_A TLR4, TOLL-like recepto 99.7 4.7E-16 1.6E-20 153.8 15.4 58 270-327 420-480 (606)
25 2z81_A CD282 antigen, TOLL-lik 99.7 6.5E-16 2.2E-20 150.9 15.8 296 5-327 26-417 (549)
26 3oja_B Anopheles plasmodium-re 99.7 1.1E-15 3.8E-20 151.0 17.5 261 4-307 74-356 (597)
27 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-15 5.5E-20 149.9 18.6 57 269-327 492-552 (606)
28 1ogq_A PGIP-2, polygalacturona 99.7 2.3E-16 7.9E-21 143.3 11.5 183 111-313 121-308 (313)
29 1xku_A Decorin; proteoglycan, 99.7 3.7E-15 1.3E-19 136.2 18.6 259 3-307 29-304 (330)
30 2z63_A TOLL-like receptor 4, v 99.7 6.1E-16 2.1E-20 151.7 14.3 103 214-327 418-525 (570)
31 2z7x_B TOLL-like receptor 1, v 99.7 3.4E-15 1.1E-19 145.0 18.9 123 5-147 21-148 (520)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.6E-15 1.6E-19 145.5 19.0 106 214-328 374-481 (562)
33 4ecn_A Leucine-rich repeat pro 99.6 6.4E-16 2.2E-20 157.6 13.3 302 3-335 489-842 (876)
34 3j0a_A TOLL-like receptor 5; m 99.6 8.5E-15 2.9E-19 150.3 20.8 110 190-313 266-378 (844)
35 3zyj_A Leucine-rich repeat-con 99.6 4.9E-15 1.7E-19 140.9 17.0 230 15-307 56-290 (440)
36 2z63_A TOLL-like receptor 4, v 99.6 3.4E-15 1.2E-19 146.3 16.1 191 116-327 305-501 (570)
37 3bz5_A Internalin-J, INLJ; leu 99.6 4.6E-15 1.6E-19 141.7 15.9 135 4-172 41-180 (457)
38 3bz5_A Internalin-J, INLJ; leu 99.6 6.9E-15 2.4E-19 140.5 16.8 265 4-328 63-347 (457)
39 1ziw_A TOLL-like receptor 3; i 99.6 1.1E-14 3.9E-19 145.8 18.6 177 139-327 250-437 (680)
40 2ft3_A Biglycan; proteoglycan, 99.6 6.1E-15 2.1E-19 134.9 15.2 276 3-325 31-325 (332)
41 3zyi_A Leucine-rich repeat-con 99.6 1.1E-14 3.6E-19 139.1 17.0 230 15-307 67-301 (452)
42 1ziw_A TOLL-like receptor 3; i 99.6 4.6E-15 1.6E-19 148.6 15.1 97 214-313 269-371 (680)
43 3j0a_A TOLL-like receptor 5; m 99.6 6.6E-15 2.2E-19 151.1 16.5 292 4-327 23-369 (844)
44 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.7E-19 134.4 14.5 255 15-327 44-308 (353)
45 1xku_A Decorin; proteoglycan, 99.6 5.2E-14 1.8E-18 128.6 18.0 257 25-327 30-300 (330)
46 3zyi_A Leucine-rich repeat-con 99.6 2.5E-14 8.4E-19 136.5 13.5 222 4-284 74-300 (452)
47 2z66_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 128.9 12.8 236 8-307 10-259 (306)
48 3zyj_A Leucine-rich repeat-con 99.5 3.6E-14 1.2E-18 134.9 13.8 63 4-73 63-128 (440)
49 3o53_A Protein LRIM1, AGAP0063 99.5 6.7E-15 2.3E-19 133.9 6.8 269 7-320 12-286 (317)
50 2ft3_A Biglycan; proteoglycan, 99.5 1.9E-13 6.6E-18 124.9 16.4 257 26-328 33-302 (332)
51 2z80_A TOLL-like receptor 2, v 99.5 5.3E-14 1.8E-18 129.8 12.0 246 4-307 51-312 (353)
52 2z66_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 123.7 13.0 35 136-172 77-111 (306)
53 1ozn_A Reticulon 4 receptor; N 99.5 6.2E-14 2.1E-18 125.3 9.5 215 9-253 15-235 (285)
54 3o53_A Protein LRIM1, AGAP0063 99.5 1.2E-13 3.9E-18 125.6 10.3 36 52-92 29-65 (317)
55 1ogq_A PGIP-2, polygalacturona 99.5 2E-13 6.9E-18 123.8 11.9 194 110-325 96-296 (313)
56 2xwt_C Thyrotropin receptor; s 99.5 1.4E-12 4.7E-17 113.5 15.9 193 116-328 32-234 (239)
57 3g06_A SSPH2 (leucine-rich rep 99.5 1.8E-12 6.1E-17 127.9 18.0 246 6-327 41-291 (622)
58 3ogk_B Coronatine-insensitive 99.4 6.6E-14 2.2E-18 137.9 6.5 256 50-326 213-519 (592)
59 1jl5_A Outer protein YOPM; leu 99.4 1.9E-13 6.4E-18 130.5 8.5 177 5-227 11-205 (454)
60 4g8a_A TOLL-like receptor 4; l 99.4 3.3E-12 1.1E-16 126.4 17.6 104 214-327 466-574 (635)
61 2ast_B S-phase kinase-associat 99.4 9.3E-14 3.2E-18 127.0 5.2 222 7-284 49-282 (336)
62 3g06_A SSPH2 (leucine-rich rep 99.4 3.8E-12 1.3E-16 125.6 16.8 230 5-309 61-297 (622)
63 1jl5_A Outer protein YOPM; leu 99.4 7.1E-12 2.4E-16 119.5 17.7 204 52-307 148-368 (454)
64 3oja_A Leucine-rich immune mol 99.4 1.8E-12 6.3E-17 124.7 13.5 167 115-304 99-270 (487)
65 3oja_A Leucine-rich immune mol 99.4 1.9E-12 6.4E-17 124.7 12.1 228 26-325 34-267 (487)
66 4ay9_X Follicle-stimulating ho 99.4 6.2E-12 2.1E-16 115.8 13.7 230 15-305 22-255 (350)
67 1ozn_A Reticulon 4 receptor; N 99.4 6.6E-12 2.2E-16 112.1 13.4 193 116-326 33-231 (285)
68 4ay9_X Follicle-stimulating ho 99.3 1.1E-11 3.6E-16 114.3 14.5 202 110-327 49-253 (350)
69 2xwt_C Thyrotropin receptor; s 99.3 2E-11 6.8E-16 106.1 15.2 177 136-329 30-214 (239)
70 2z62_A TOLL-like receptor 4, v 99.3 2E-11 6.9E-16 108.4 14.9 194 116-327 29-231 (276)
71 3rfs_A Internalin B, repeat mo 99.3 2.2E-11 7.5E-16 108.0 14.8 180 110-309 36-218 (272)
72 3ogk_B Coronatine-insensitive 99.3 1.3E-12 4.6E-17 128.5 6.2 285 4-311 191-527 (592)
73 1p9a_G Platelet glycoprotein I 99.3 2.5E-11 8.5E-16 108.8 12.9 151 135-306 53-205 (290)
74 2o6q_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 105.9 14.3 174 116-307 38-216 (270)
75 4g8a_A TOLL-like receptor 4; l 99.3 6.6E-11 2.3E-15 117.0 17.1 82 239-328 465-550 (635)
76 1p9a_G Platelet glycoprotein I 99.3 9.6E-11 3.3E-15 104.9 16.2 188 115-327 10-202 (290)
77 1wwl_A Monocyte differentiatio 99.3 5.5E-12 1.9E-16 114.3 7.7 198 115-328 95-304 (312)
78 1h6u_A Internalin H; cell adhe 99.3 4.8E-11 1.6E-15 107.9 13.7 175 110-315 58-235 (308)
79 4ezg_A Putative uncharacterize 99.3 4.5E-11 1.6E-15 100.7 12.6 151 134-307 41-192 (197)
80 2o6q_A Variable lymphocyte rec 99.3 1.8E-10 6.3E-15 101.9 16.6 173 136-327 36-212 (270)
81 1h6u_A Internalin H; cell adhe 99.2 5.4E-11 1.8E-15 107.5 12.9 196 22-292 37-234 (308)
82 3rfs_A Internalin B, repeat mo 99.2 5.3E-11 1.8E-15 105.5 12.1 188 111-320 59-246 (272)
83 1wwl_A Monocyte differentiatio 99.2 2.9E-11 9.9E-16 109.5 10.5 205 83-307 93-307 (312)
84 1z7x_W Ribonuclease inhibitor; 99.2 5.2E-13 1.8E-17 127.4 -2.2 157 5-173 56-238 (461)
85 2p1m_B Transport inhibitor res 99.2 3.9E-12 1.3E-16 125.1 3.5 190 113-313 182-419 (594)
86 2z62_A TOLL-like receptor 4, v 99.2 5.3E-11 1.8E-15 105.7 9.8 175 115-307 52-235 (276)
87 1z7x_W Ribonuclease inhibitor; 99.2 1.2E-12 4.2E-17 124.7 -1.3 159 4-173 2-181 (461)
88 2p1m_B Transport inhibitor res 99.2 4.2E-12 1.4E-16 124.9 2.3 60 242-308 455-518 (594)
89 2ast_B S-phase kinase-associat 99.2 4.1E-12 1.4E-16 116.0 1.4 182 112-306 90-282 (336)
90 4glp_A Monocyte differentiatio 99.2 9.2E-11 3.1E-15 106.0 9.8 49 274-325 251-299 (310)
91 4glp_A Monocyte differentiatio 99.1 2.2E-10 7.5E-15 103.5 10.8 202 83-307 89-305 (310)
92 3m19_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 97.2 13.4 153 137-307 35-190 (251)
93 1h6t_A Internalin B; cell adhe 99.1 5.4E-10 1.8E-14 100.1 12.3 173 110-313 41-216 (291)
94 2ca6_A RAN GTPase-activating p 99.1 3.8E-11 1.3E-15 111.9 4.7 259 6-307 10-314 (386)
95 4ezg_A Putative uncharacterize 99.1 4.1E-10 1.4E-14 94.8 10.6 149 112-284 41-191 (197)
96 1h6t_A Internalin B; cell adhe 99.1 9.5E-10 3.2E-14 98.5 13.0 163 134-326 43-206 (291)
97 2ca6_A RAN GTPase-activating p 99.1 7.5E-11 2.6E-15 109.9 5.7 235 4-290 31-318 (386)
98 1m9s_A Internalin B; cell inva 99.0 8.8E-10 3E-14 108.5 11.5 167 111-307 39-208 (605)
99 1m9s_A Internalin B; cell inva 99.0 1.7E-09 5.7E-14 106.5 12.3 164 133-326 39-203 (605)
100 3m19_A Variable lymphocyte rec 99.0 2.1E-08 7.1E-13 87.6 15.8 168 139-328 16-187 (251)
101 1xeu_A Internalin C; cellular 98.9 8.1E-09 2.8E-13 91.0 12.1 144 135-307 39-183 (263)
102 2o6s_A Variable lymphocyte rec 98.9 7.3E-09 2.5E-13 87.7 9.8 161 136-318 27-187 (208)
103 2ell_A Acidic leucine-rich nuc 98.9 8.2E-09 2.8E-13 84.3 9.1 92 214-315 68-165 (168)
104 3e6j_A Variable lymphocyte rec 98.9 2.6E-08 8.8E-13 85.8 12.6 107 187-307 61-170 (229)
105 2ell_A Acidic leucine-rich nuc 98.8 1.9E-08 6.6E-13 82.0 11.0 140 135-291 22-163 (168)
106 3goz_A Leucine-rich repeat-con 98.8 2.2E-09 7.5E-14 99.1 5.2 47 22-71 18-65 (362)
107 3goz_A Leucine-rich repeat-con 98.8 1.1E-09 3.7E-14 101.2 3.1 243 4-284 21-294 (362)
108 2v9t_B SLIT homolog 2 protein 98.8 1.1E-07 3.7E-12 81.3 13.5 82 215-306 78-162 (220)
109 2v70_A SLIT-2, SLIT homolog 2 98.7 1.8E-07 6.1E-12 79.9 14.2 84 214-307 78-164 (220)
110 2o6s_A Variable lymphocyte rec 98.7 1.8E-07 6E-12 79.1 13.8 141 149-309 18-161 (208)
111 1xeu_A Internalin C; cellular 98.7 7.1E-08 2.4E-12 84.9 10.9 151 110-291 36-188 (263)
112 2xot_A Amphoterin-induced prot 98.7 5.4E-08 1.9E-12 89.7 9.8 128 116-253 40-173 (361)
113 2je0_A Acidic leucine-rich nuc 98.7 2.5E-08 8.6E-13 79.6 6.1 34 137-172 17-52 (149)
114 2v9t_B SLIT homolog 2 protein 98.7 2E-07 6.7E-12 79.7 11.8 132 137-285 32-163 (220)
115 2je0_A Acidic leucine-rich nuc 98.6 7.2E-08 2.5E-12 76.9 8.0 129 159-305 14-149 (149)
116 3cvr_A Invasion plasmid antige 98.6 2.8E-07 9.5E-12 89.9 13.2 159 115-315 80-249 (571)
117 3sb4_A Hypothetical leucine ri 98.6 1.8E-07 6.3E-12 84.9 11.2 98 216-326 225-327 (329)
118 3cvr_A Invasion plasmid antige 98.6 1.5E-07 5E-12 91.9 10.9 175 57-286 59-242 (571)
119 3e6j_A Variable lymphocyte rec 98.6 3E-07 1E-11 79.1 11.2 132 136-285 39-170 (229)
120 3sb4_A Hypothetical leucine ri 98.6 3.7E-07 1.3E-11 82.9 12.3 103 161-281 225-328 (329)
121 2xot_A Amphoterin-induced prot 98.6 5.5E-07 1.9E-11 82.9 13.3 157 136-307 38-200 (361)
122 2v70_A SLIT-2, SLIT homolog 2 98.5 4.6E-07 1.6E-11 77.4 10.9 132 137-285 32-164 (220)
123 1a9n_A U2A', U2A'; complex (nu 98.5 1.8E-07 6.3E-12 76.8 7.3 83 215-306 62-150 (176)
124 1dce_A Protein (RAB geranylger 98.4 8.8E-09 3E-13 100.7 -2.9 121 116-249 442-566 (567)
125 1a9n_A U2A', U2A'; complex (nu 98.4 6.8E-07 2.3E-11 73.4 8.9 65 215-284 86-150 (176)
126 4fdw_A Leucine rich hypothetic 98.3 2.7E-05 9.3E-10 72.6 18.2 200 110-335 175-385 (401)
127 2wfh_A SLIT homolog 2 protein 98.3 1.6E-06 5.3E-11 72.5 7.1 53 8-71 13-68 (193)
128 2o6r_A Variable lymphocyte rec 98.2 7E-06 2.4E-10 67.2 10.5 83 215-307 50-135 (177)
129 1w8a_A SLIT protein; signaling 98.2 7.3E-06 2.5E-10 68.2 10.6 13 159-171 51-63 (192)
130 3e4g_A ATP synthase subunit S, 98.2 6.6E-07 2.2E-11 73.1 3.9 90 191-290 62-155 (176)
131 2wfh_A SLIT homolog 2 protein 98.2 7.4E-06 2.5E-10 68.3 10.1 36 270-306 98-136 (193)
132 3e4g_A ATP synthase subunit S, 98.2 7.5E-07 2.6E-11 72.7 3.5 91 163-258 62-154 (176)
133 1dce_A Protein (RAB geranylger 98.1 4.5E-06 1.5E-10 81.5 8.3 26 53-78 345-370 (567)
134 4b8c_D Glucose-repressible alc 98.1 2E-06 6.9E-11 86.5 5.5 139 157-316 219-361 (727)
135 2o6r_A Variable lymphocyte rec 98.1 1.4E-05 4.7E-10 65.4 9.4 107 137-253 28-134 (177)
136 1w8a_A SLIT protein; signaling 98.0 2.6E-05 9E-10 64.8 10.3 124 165-307 11-137 (192)
137 1ds9_A Outer arm dynein; leuci 98.0 2.5E-07 8.4E-12 77.6 -2.3 109 132-254 43-151 (198)
138 2ra8_A Uncharacterized protein 97.9 1.8E-05 6.2E-10 72.7 7.1 159 135-307 137-318 (362)
139 4b8c_D Glucose-repressible alc 97.9 1.5E-05 5.1E-10 80.2 6.8 107 110-228 219-327 (727)
140 4fdw_A Leucine rich hypothetic 97.9 0.00019 6.4E-09 66.9 13.8 236 6-283 136-379 (401)
141 4fs7_A Uncharacterized protein 97.9 0.0003 1E-08 65.3 14.9 78 239-328 293-374 (394)
142 1ds9_A Outer arm dynein; leuci 97.7 6.1E-06 2.1E-10 68.9 0.7 40 22-70 44-83 (198)
143 4fs7_A Uncharacterized protein 97.7 0.0011 3.9E-08 61.3 15.8 97 214-325 294-393 (394)
144 2ra8_A Uncharacterized protein 97.7 1.6E-05 5.6E-10 73.0 2.9 177 136-326 106-313 (362)
145 3un9_A NLR family member X1; l 97.5 6.6E-06 2.3E-10 76.0 -2.7 163 135-307 70-250 (372)
146 4gt6_A Cell surface protein; l 97.4 0.0052 1.8E-07 56.8 16.6 29 7-35 66-96 (394)
147 2ifg_A High affinity nerve gro 97.3 0.00064 2.2E-08 61.7 8.6 87 186-284 27-113 (347)
148 2r9u_A Variable lymphocyte rec 97.3 0.00063 2.1E-08 55.4 7.5 58 137-199 33-90 (174)
149 2r9u_A Variable lymphocyte rec 97.3 0.00052 1.8E-08 55.9 6.7 81 115-200 33-115 (174)
150 3g39_A Variable lymphocyte rec 97.2 0.00088 3E-08 54.2 7.5 58 137-199 30-87 (170)
151 2ifg_A High affinity nerve gro 97.2 0.0012 4E-08 59.9 9.2 86 213-307 27-114 (347)
152 3g39_A Variable lymphocyte rec 97.1 0.00089 3E-08 54.2 6.7 81 115-200 30-112 (170)
153 3un9_A NLR family member X1; l 95.9 0.0012 4.1E-08 60.7 -0.5 146 137-289 101-253 (372)
154 4h09_A Hypothetical leucine ri 95.0 2 6.7E-05 38.8 19.9 99 216-328 239-341 (379)
155 4gt6_A Cell surface protein; l 94.9 0.41 1.4E-05 43.8 13.2 52 5-64 114-167 (394)
156 3rw6_A Nuclear RNA export fact 93.3 0.029 9.8E-07 48.8 1.9 13 240-252 193-205 (267)
157 3rw6_A Nuclear RNA export fact 91.7 0.15 5E-06 44.3 4.2 41 272-313 194-237 (267)
158 1io0_A Tropomodulin; LRR prote 91.6 0.039 1.3E-06 45.0 0.5 19 157-175 31-49 (185)
159 1io0_A Tropomodulin; LRR prote 89.9 0.085 2.9E-06 43.0 0.9 16 158-173 61-76 (185)
160 4h09_A Hypothetical leucine ri 87.5 2.2 7.4E-05 38.5 8.8 22 150-171 274-295 (379)
161 3rfe_A Platelet glycoprotein I 81.4 1.2 4E-05 33.8 3.5 42 16-67 24-65 (130)
162 3rfe_A Platelet glycoprotein I 76.6 2.2 7.6E-05 32.2 3.7 36 137-173 31-66 (130)
163 2lz0_A Uncharacterized protein 64.7 9.7 0.00033 27.2 4.6 35 269-305 15-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.1e-18 Score=157.83 Aligned_cols=189 Identities=19% Similarity=0.242 Sum_probs=147.9
Q ss_pred hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC-----ccccCCCccceeecccccccccccc
Q 039808 134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----LTTVIFPSLENLSIHHLWNLTHICE 208 (358)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~ 208 (358)
..+++|+.|++.++ .+..++. .++++++|++|++++|.....++.... .....+++|++|+++++. ++.+
T Consensus 124 ~~l~~L~~L~Ls~n-~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l-- 198 (328)
T 4fcg_A 124 QQFAGLETLTLARN-PLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL-- 198 (328)
T ss_dssp GGGTTCSEEEEESC-CCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--
T ss_pred hccCCCCEEECCCC-ccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--
Confidence 34677777888777 5666665 488889999999998877776654311 012348899999998863 4444
Q ss_pred cccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808 209 GSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV 288 (358)
Q Consensus 209 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 288 (358)
+...+.+++|++|++++|. +..+++ .++.+++|+.|++++|.....++ ..++.+++|+.|++++|..++
T Consensus 199 -p~~l~~l~~L~~L~L~~N~-l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 199 -PASIANLQNLKSLKIRNSP-LSALGP--AIHHLPKLEELDLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -CGGGGGCTTCCEEEEESSC-CCCCCG--GGGGCTTCCEEECTTCTTCCBCC-------CCTTCCCCCCEEECTTCTTCC
T ss_pred -hHhhcCCCCCCEEEccCCC-CCcCch--hhccCCCCCEEECcCCcchhhhH-------HHhcCCCCCCEEECCCCCchh
Confidence 3335678999999999975 555433 46889999999999998887776 467889999999999999999
Q ss_pred cccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccccccceec
Q 039808 289 TIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWE 338 (358)
Q Consensus 289 ~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~~~~l~~~ 338 (358)
.++.. .+++|++|++++|+.++.+|..+..+++|+.+..+..+.+.+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence 88877 899999999999999999999999999999999988877777655
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=7.8e-18 Score=161.84 Aligned_cols=287 Identities=17% Similarity=0.133 Sum_probs=186.9
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV 80 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~ 80 (358)
-.++++|+|+. +.+++..++++++|++|++++ +.+.. ..+..+.++++|++|++..+.+..++.. .
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~ 99 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSA------VEPGAFNNLFNLRTLGLRSNRLKLIPLG----V 99 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCE------ECTTTTTTCTTCCEEECCSSCCCSCCTT----S
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCE------eChhhhhCCccCCEEECCCCcCCccCcc----c
Confidence 35678888887 345666678899999999987 33321 1245688889999999877777666531 0
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV 158 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l 158 (358)
...+++|+.+.+ ..+ . +...+. ..+..+.+|+.|.+.++. .+....+..+++|+.|++.++ .+..++...+
T Consensus 100 ~~~l~~L~~L~L---s~n-~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l 172 (477)
T 2id5_A 100 FTGLSNLTKLDI---SEN-K-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEAL 172 (477)
T ss_dssp STTCTTCCEEEC---TTS-C-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred ccCCCCCCEEEC---CCC-c-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHh
Confidence 114566776665 111 0 111111 245566688888887764 333334456788888888888 6666665557
Q ss_pred cCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808 159 RSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM 238 (358)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 238 (358)
.++++|+.|++++|.. ..+.... ...+++|++|.++++..+..++.. .....+|++|++.+| +++.+ +...
T Consensus 173 ~~l~~L~~L~l~~n~i-~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n-~l~~~-~~~~ 243 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNI-NAIRDYS---FKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHC-NLTAV-PYLA 243 (477)
T ss_dssp TTCTTCCEEEEESCCC-CEECTTC---SCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESS-CCCSC-CHHH
T ss_pred cccCCCcEEeCCCCcC-cEeChhh---cccCcccceeeCCCCccccccCcc---cccCccccEEECcCC-ccccc-CHHH
Confidence 8888888888888743 3343322 556788888888887776665322 223458888888887 45554 3345
Q ss_pred hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808 239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ .++.+... .+++|+.|++++| +++.+|..
T Consensus 244 ~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNP-ISTIEG------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp HTTCTTCCEEECCSSC-CCEECT------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred hcCccccCeeECCCCc-CCccCh------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh
Confidence 6788888888888764 444331 24567788888888766 56666444 6788888888887 57777654
Q ss_pred C-CCCCCeeEEE
Q 039808 316 S-NLKHSVMEIK 326 (358)
Q Consensus 316 ~-~~~~~L~~~~ 326 (358)
. ..+++|+.+.
T Consensus 315 ~~~~l~~L~~L~ 326 (477)
T 2id5_A 315 VFHSVGNLETLI 326 (477)
T ss_dssp GBSCGGGCCEEE
T ss_pred HcCCCcccCEEE
Confidence 3 4566677664
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=9.8e-18 Score=154.37 Aligned_cols=272 Identities=15% Similarity=0.134 Sum_probs=125.7
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV 80 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~ 80 (358)
+.+|+.+++++ ..+|. ++.+++|++|++++ +.+.. .+. +.++++|++|++..+.+..++. +.
T Consensus 43 l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~-n~i~~-------~~~-~~~l~~L~~L~L~~n~i~~~~~-~~--- 107 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG-NQITD-------ISP-LSNLVKLTNLYIGTNKITDISA-LQ--- 107 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCS-SCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGG-GT---
T ss_pred cccccEEEEeCCccccchh--hhhcCCccEEEccC-Ccccc-------chh-hhcCCcCCEEEccCCcccCchH-Hc---
Confidence 45667777766 23443 56777777777776 23321 111 5666666666665555554431 12
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChH-HHHhhccCccEEEeccCCCCCccCccccc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPD-AVLQILACCTAFYLDNHLHINSLSDFGVR 159 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~l~ 159 (358)
.+++|+.+.+. .+ .+...+ .+..+++|+.|.+.++..... .....+++|+.|++.++ .+..+.. +.
T Consensus 108 --~l~~L~~L~l~---~n--~i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~ 174 (347)
T 4fmz_A 108 --NLTNLRELYLN---ED--NISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IA 174 (347)
T ss_dssp --TCTTCSEEECT---TS--CCCCCG---GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GG
T ss_pred --CCCcCCEEECc---CC--cccCch---hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hc
Confidence 34555555541 11 011111 234444555665555421111 11334555555555555 3333332 45
Q ss_pred CccCCcEEEeecCCCceEecCCC-----------------CccccCCCccceeecccccccccccccccCCCcCccccEE
Q 039808 160 SINGLKFCIISECPKIETVVDGK-----------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRIL 222 (358)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 222 (358)
.+++|++|++++|. +..+..-. ......+++|++|+++++.- ..+. ..+.+++|++|
T Consensus 175 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~----~~~~l~~L~~L 248 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLS----PLANLSQLTWL 248 (347)
T ss_dssp GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCG----GGTTCTTCCEE
T ss_pred cCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCc----chhcCCCCCEE
Confidence 55555555555542 22111000 00023344555555554422 1110 02344555555
Q ss_pred eEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCcc
Q 039808 223 SVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLE 299 (358)
Q Consensus 223 ~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~ 299 (358)
++++| .++.+ +.+..+++|+.|++++| .+..++ ....+++|+.|++++| .++..... .+++|+
T Consensus 249 ~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 249 EIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp ECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCS
T ss_pred ECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh--------hhcCCCCCCEEECcCC-cCCCcChhHhhccccCC
Confidence 55554 23332 22345555555555554 333322 2445566666666555 33333322 566666
Q ss_pred EEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808 300 YVSFYDCPRLKNIGLGSNLKHSVMEI 325 (358)
Q Consensus 300 ~L~i~~C~~L~~lP~~~~~~~~L~~~ 325 (358)
+|++++|+ ++.+|. ...+++|+.+
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSA 338 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEE
T ss_pred EEEccCCc-cccccC-hhhhhcccee
Confidence 66666664 444433 3344555544
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=158.23 Aligned_cols=268 Identities=20% Similarity=0.223 Sum_probs=196.2
Q ss_pred CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhh-hhhcCCCCCceEEEEccCchhHH-HHHh
Q 039808 3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVV-LEVCNLTELSSLCFHFPEIKLLE-LFLQ 77 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~~~~~~l~~l~-~~~~ 77 (358)
-+.+|++|+|+. ..++++.++++++|++|++++ +.+. .++ ..+.++++|++|++..+.+..++ ..+.
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCC-------ccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 467899999997 345566678999999999998 4343 222 34788999999999777765542 1122
Q ss_pred hhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc
Q 039808 78 RCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD 155 (358)
Q Consensus 78 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 155 (358)
.+++|+.+.+.... +...+ ...+..+.+|+.|.+.++. .++......+++|+.|++.++ .+..+..
T Consensus 126 -----~l~~L~~L~l~~n~-----l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~ 193 (477)
T 2id5_A 126 -----DLYNLKSLEVGDND-----LVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRD 193 (477)
T ss_dssp -----TCTTCCEEEECCTT-----CCEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECT
T ss_pred -----ccccCCEEECCCCc-----cceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeCh
Confidence 56778888762111 11111 1256667799999998874 566666778999999999998 7777776
Q ss_pred ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc
Q 039808 156 FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS 235 (358)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 235 (358)
..+..+++|++|++++|..+..++.. .....+|++|+++++. ++.++. ...+.+++|++|+++++. ++.+.+
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~ 265 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPN----CLYGLNLTSLSITHCN-LTAVPY--LAVRHLVYLRFLNLSYNP-ISTIEG 265 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTT----TTTTCCCSEEEEESSC-CCSCCH--HHHTTCTTCCEEECCSSC-CCEECT
T ss_pred hhcccCcccceeeCCCCccccccCcc----cccCccccEEECcCCc-ccccCH--HHhcCccccCeeECCCCc-CCccCh
Confidence 67899999999999999888877554 3344599999998874 444321 123568999999999875 555533
Q ss_pred hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 236 SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 236 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
..+..+++|+.|+++++. +..+. ...+..+++|+.|+++++ .++.++.. .+++|+.|++++++
T Consensus 266 -~~~~~l~~L~~L~L~~n~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 266 -SMLHELLRLQEIQLVGGQ-LAVVE------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TSCTTCTTCCEEECCSSC-CSEEC------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -hhccccccCCEEECCCCc-cceEC------HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 356789999999999874 44332 135778899999999877 78877765 68999999999875
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=1.3e-17 Score=156.11 Aligned_cols=282 Identities=15% Similarity=0.137 Sum_probs=180.5
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~ 79 (358)
+.++++++++. +.+|+.+++++++|++|++++ +.+... .+..+.++++|++|++..+.+..++. .++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-- 114 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCC-Cccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhc--
Confidence 46778888876 568888888899999999987 333211 12367888888888887777665532 112
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFG 157 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 157 (358)
.+++|+.+.+. .+ .+..+|. ..+..+++|+.|.+.++. .++......+++|+.|++.++ .+..++
T Consensus 115 ---~l~~L~~L~L~---~n--~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--- 181 (390)
T 3o6n_A 115 ---NVPLLTVLVLE---RN--DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--- 181 (390)
T ss_dssp ---TCTTCCEEECC---SS--CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---
T ss_pred ---CCCCCCEEECC---CC--ccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---
Confidence 45667766652 11 1233332 224556678888887763 444444556778888888777 554443
Q ss_pred ccCccCCcEEEeecCCCceEecCCC-------------CccccCCCccceeecccccccccccccccCCCcCccccEEeE
Q 039808 158 VRSINGLKFCIISECPKIETVVDGK-------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSV 224 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 224 (358)
++.+++|+.|+++++.. ..+.... ......+++|++|++.++.- ... ...+.+++|++|++
T Consensus 182 ~~~l~~L~~L~l~~n~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~----~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDT----AWLLNYPGLVEVDL 255 (390)
T ss_dssp GGGCTTCSEEECCSSCC-SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCC----GGGGGCTTCSEEEC
T ss_pred cccccccceeecccccc-cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-ccc----HHHcCCCCccEEEC
Confidence 45566666666655422 2111000 00012346777777777542 221 23456788999999
Q ss_pred ecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEe
Q 039808 225 HACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVS 302 (358)
Q Consensus 225 ~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~ 302 (358)
+++. ++...+ ..+..+++|+.|+++++ .+..++ .....+|+|+.|+++++ .++.++.. .+++|++|+
T Consensus 256 s~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 256 SYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALN-------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp CSSC-CCEEES-GGGTTCSSCCEEECCSS-CCCEEE-------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCCc-CCCcCh-hHccccccCCEEECCCC-cCcccC-------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence 8874 554433 34577889999999886 455554 34567899999999887 67777766 789999999
Q ss_pred eeCCcCCCccCCCCCCCCCeeEEEe
Q 039808 303 FYDCPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 303 i~~C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
+++|+ ++.+| ...+++|+.+..
T Consensus 325 L~~N~-i~~~~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 325 LDHNS-IVTLK--LSTHHTLKNLTL 346 (390)
T ss_dssp CCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred CCCCc-cceeC--chhhccCCEEEc
Confidence 99985 77776 445678887754
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.2e-17 Score=159.36 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=86.3
Q ss_pred CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808 190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG 269 (358)
Q Consensus 190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 269 (358)
++|++|+++++.-.... +...+.+++|++|++++|. +..+.+ ..++.+++|+.|+++++. +..++ ...
T Consensus 275 ~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~ 342 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL---KSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-LGSID------SRM 342 (455)
T ss_dssp SCCCEEECCSSCCCEEC---TTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEEC------GGG
T ss_pred cCceEEEecCccccccc---hhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-cCCcC------hhH
Confidence 46677777665433221 2234567888888888874 555433 345778899999998873 44432 134
Q ss_pred cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCC-CCCCCeeEEEe
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVMEIKA 327 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~~~~ 327 (358)
+..+++|+.|+++++ .++.+... .+++|++|++++| +++.+|... ..+++|+.+.-
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred hcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence 678899999999887 56666443 7899999999997 588888754 67888988854
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.1e-16 Score=152.60 Aligned_cols=135 Identities=21% Similarity=0.142 Sum_probs=95.8
Q ss_pred cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808 162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF 241 (358)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~ 241 (358)
++|++|++++|......+.. ...+++|++|+++++.-.... +..++.+++|++|++++| .++.+.+ ..++.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV----FSHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFEN 345 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT----TTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECG-GGGTT
T ss_pred cCceEEEecCccccccchhh----cccCCCCCEEECCCCcccccC---hhHhcCcccCCEEECCCC-ccCCcCh-hHhcC
Confidence 45666666665433322222 556889999999887543221 223567899999999998 4566544 45688
Q ss_pred CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808 242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP 313 (358)
+++|+.|+++++. +..+. ...+..+++|+.|+++++ .++.++.. .+++|++|++++++---..|
T Consensus 346 l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 LDKLEVLDLSYNH-IRALG------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSC-CCEEC------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCEEECCCCc-ccccC------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999984 44432 135778999999999886 78888875 78999999999986433333
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=1.3e-16 Score=157.68 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=20.4
Q ss_pred CcccceeccCCC---CccCCchhhcCccccEEEeee
Q 039808 3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVV 35 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~ 35 (358)
-+.+|++|+|+. ..++++.++++.+|++|++++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 356677777765 234444456777777777766
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.7e-16 Score=161.94 Aligned_cols=302 Identities=10% Similarity=0.052 Sum_probs=173.6
Q ss_pred CcccceeccCCC---Cc------------------cCCch-hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCc
Q 039808 3 LSCNVEYVKMPP---QL------------------ISSGI-ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELS 60 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~------------------ip~~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 60 (358)
-+++|++|+|+. .. +|+.+ +.++++|++|++++ +.+. ..++..+.++++|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-N~l~------~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-CPNM------TQLPDFLYDLPELQ 518 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-CTTC------CSCCGGGGGCSSCC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-CCCC------ccChHHHhCCCCCC
Confidence 367899999987 33 77775 33999999999998 2221 34567899999999
Q ss_pred eEEEEccC-ch--hHHHHHhhhc--cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHH
Q 039808 61 SLCFHFPE-IK--LLELFLQRCV--AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVL 133 (358)
Q Consensus 61 ~L~~~~~~-l~--~l~~~~~~~~--~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~ 133 (358)
.|++..+. +. .+|..++..+ ...+++|+.+.+. .+ .+..+|....+..+.+|+.|.+.++. .++ ..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls---~N--~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~ 591 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG---YN--NLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AF 591 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC---SS--CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEee---CC--cCCccCChhhhhcCCCCCEEECCCCCcccch--hh
Confidence 99998776 65 4777666432 1134478877762 22 12344432356677788999987764 344 34
Q ss_pred hhccCccEEEeccCCCCCccCcccccCccC-CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808 134 QILACCTAFYLDNHLHINSLSDFGVRSING-LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP 212 (358)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 212 (358)
..+++|+.|++.++ .+..++. .+.++++ |++|++++|. +..++... .....++|+.|.++++.-...++..+..
T Consensus 592 ~~L~~L~~L~Ls~N-~l~~lp~-~l~~l~~~L~~L~Ls~N~-L~~lp~~~--~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 592 GTNVKLTDLKLDYN-QIEEIPE-DFCAFTDQVEGLGFSHNK-LKYIPNIF--NAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CTTSEESEEECCSS-CCSCCCT-TSCEECTTCCEEECCSSC-CCSCCSCC--CTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred cCCCcceEEECcCC-ccccchH-HHhhccccCCEEECcCCC-CCcCchhh--hccccCCCCEEECcCCcCCCccccchhh
Confidence 56788999999888 5666665 4888888 9999998885 33454321 1112344777777766433322111111
Q ss_pred CC--cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc------------------------cc
Q 039808 213 NG--SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE------------------------II 266 (358)
Q Consensus 213 ~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~------------------------~~ 266 (358)
.+ ..++|+.|++++|. +..+ |..++..+++|+.|+++++ .+..++.... ..
T Consensus 667 l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred hccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence 11 12356666666543 3332 2233345555666665554 2223321100 00
Q ss_pred ccccc--cCCCcceeccccccccccccCC--CCCCccEEeeeC------CcCCCccCCCCCCCCCeeEEEe
Q 039808 267 DSGCT--ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYD------CPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 267 ~~~~~--~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~------C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
..... .+++|+.|+++++ .++.+|.. .+++|+.|++++ |.....+|..+..+++|+.+..
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred hHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 01222 4556666666544 44445444 556666666654 3334445555555556665544
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=2.3e-17 Score=167.76 Aligned_cols=80 Identities=18% Similarity=0.068 Sum_probs=53.0
Q ss_pred ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC
Q 039808 240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN 317 (358)
Q Consensus 240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~ 317 (358)
..+++|+.|++++|.-...++ ..+..+++|+.|+++++.-...+|.. .+++|++|++++|.....+|..+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCCCCceEEEecCCcccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 444555555555443332322 34667788888888777533355554 788888888888876667888887
Q ss_pred CCCCeeEEE
Q 039808 318 LKHSVMEIK 326 (358)
Q Consensus 318 ~~~~L~~~~ 326 (358)
.+++|+.++
T Consensus 536 ~l~~L~~L~ 544 (768)
T 3rgz_A 536 DCRSLIWLD 544 (768)
T ss_dssp GCTTCCEEE
T ss_pred CCCCCCEEE
Confidence 888888774
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=1.4e-16 Score=146.66 Aligned_cols=259 Identities=17% Similarity=0.131 Sum_probs=158.2
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI 101 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 101 (358)
+..+.+|++|++++ +.+. .. ..+..+++|++|++..+.+..++. +. .+++|+.+.+. .+ .
T Consensus 40 ~~~l~~L~~L~l~~-~~i~-------~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~-----~l~~L~~L~L~---~n--~ 99 (347)
T 4fmz_A 40 QEELESITKLVVAG-EKVA-------SI-QGIEYLTNLEYLNLNGNQITDISP-LS-----NLVKLTNLYIG---TN--K 99 (347)
T ss_dssp HHHHTTCSEEECCS-SCCC-------CC-TTGGGCTTCCEEECCSSCCCCCGG-GT-----TCTTCCEEECC---SS--C
T ss_pred chhcccccEEEEeC-Cccc-------cc-hhhhhcCCccEEEccCCccccchh-hh-----cCCcCCEEEcc---CC--c
Confidence 46899999999998 3332 11 247889999999998877776654 23 57788888762 11 1
Q ss_pred cccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEec
Q 039808 102 VSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVV 179 (358)
Q Consensus 102 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 179 (358)
+... ..+..+++|+.|.+.++. .++. ...+++|+.|++.++.....++ .+..+++|++|++++|... .+.
T Consensus 100 i~~~---~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~-~~~ 171 (347)
T 4fmz_A 100 ITDI---SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK-DVT 171 (347)
T ss_dssp CCCC---GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCC-CCG
T ss_pred ccCc---hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcC-Cch
Confidence 1222 356777899999998875 3333 5678999999999997666665 3889999999999988533 221
Q ss_pred CCCCccccCCCccceeecccccccccccccc------------------cCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808 180 DGKELTTVIFPSLENLSIHHLWNLTHICEGS------------------VPNGSFARLRILSVHACPKLKFVFSSFMIHF 241 (358)
Q Consensus 180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~------------------~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~ 241 (358)
. ...+++|++|+++++.- ..+.... ...+.+++|++|++++|. ++.+.+ +..
T Consensus 172 ~-----~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~ 241 (347)
T 4fmz_A 172 P-----IANLTDLYSLSLNYNQI-EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP---LAN 241 (347)
T ss_dssp G-----GGGCTTCSEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GTT
T ss_pred h-----hccCCCCCEEEccCCcc-cccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc---hhc
Confidence 1 45677888888877642 2221000 002233445555554442 222211 344
Q ss_pred CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808 242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLKH 320 (358)
Q Consensus 242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~ 320 (358)
+++|+.|++++| .+..+. ....+++|+.|++++| .++.++.- .+++|++|++++|.--...|..+..++
T Consensus 242 l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 242 LSQLTWLEIGTN-QISDIN--------AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG--------GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred CCCCCEEECCCC-ccCCCh--------hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 555555555554 222221 3556667777777665 45555433 667777777777743333344445566
Q ss_pred CeeEEEec
Q 039808 321 SVMEIKAE 328 (358)
Q Consensus 321 ~L~~~~~~ 328 (358)
+|+.+...
T Consensus 312 ~L~~L~L~ 319 (347)
T 4fmz_A 312 NLTTLFLS 319 (347)
T ss_dssp TCSEEECC
T ss_pred cCCEEEcc
Confidence 66666543
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=7.4e-17 Score=147.59 Aligned_cols=225 Identities=19% Similarity=0.206 Sum_probs=103.0
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA 81 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~ 81 (358)
.+++.|+|+. ..+|+.+ +++.+|++|++++ +.+ ..++..++++++|++|++..+.+..+|..++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~-n~l-------~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~---- 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDA-AGL-------MELPDTMQQFAGLETLTLARNPLRALPASIA---- 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEES-SCC-------CCCCSCGGGGTTCSEEEEESCCCCCCCGGGG----
T ss_pred cceeEEEccCCCchhcChhh-hhCCCCCEEECCC-CCc-------cchhHHHhccCCCCEEECCCCccccCcHHHh----
Confidence 4456666655 3456653 4677777777766 222 2234456667777777776665555443222
Q ss_pred ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCc
Q 039808 82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSI 161 (358)
Q Consensus 82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l 161 (358)
.+++|+.+.+...... ...|. .+....+. .....+++|+.|++.++ .+..++. .++++
T Consensus 148 -~l~~L~~L~L~~n~~~----~~~p~--------~~~~~~~~-------~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l 205 (328)
T 4fcg_A 148 -SLNRLRELSIRACPEL----TELPE--------PLASTDAS-------GEHQGLVNLQSLRLEWT-GIRSLPA-SIANL 205 (328)
T ss_dssp -GCTTCCEEEEEEETTC----CCCCS--------CSEEEC-C-------CCEEESTTCCEEEEEEE-CCCCCCG-GGGGC
T ss_pred -cCcCCCEEECCCCCCc----cccCh--------hHhhccch-------hhhccCCCCCEEECcCC-CcCcchH-hhcCC
Confidence 3344444444211100 11111 00000000 00122455555555555 4444443 35556
Q ss_pred cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808 162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF 241 (358)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~ 241 (358)
++|++|++++|.. ..++.. ...+++|++|+++++...+.+ +...+.+++|++|++.+|.....++. .++.
T Consensus 206 ~~L~~L~L~~N~l-~~l~~~----l~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~ 275 (328)
T 4fcg_A 206 QNLKSLKIRNSPL-SALGPA----IHHLPKLEELDLRGCTALRNY---PPIFGGRAPLKRLILKDCSNLLTLPL--DIHR 275 (328)
T ss_dssp TTCCEEEEESSCC-CCCCGG----GGGCTTCCEEECTTCTTCCBC---CCCTTCCCCCCEEECTTCTTCCBCCT--TGGG
T ss_pred CCCCEEEccCCCC-CcCchh----hccCCCCCEEECcCCcchhhh---HHHhcCCCCCCEEECCCCCchhhcch--hhhc
Confidence 6666666655532 222221 334455555555554444333 22233445555555555544443311 2344
Q ss_pred CCCccEEEEecCCccccccccccccccccccCCCcceecc
Q 039808 242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTL 281 (358)
Q Consensus 242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l 281 (358)
+++|+.|++++|..++.+| ..++.+++|+.+.+
T Consensus 276 l~~L~~L~L~~n~~~~~iP-------~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLP-------SLIAQLPANCIILV 308 (328)
T ss_dssp CTTCCEEECTTCTTCCCCC-------GGGGGSCTTCEEEC
T ss_pred CCCCCEEeCCCCCchhhcc-------HHHhhccCceEEeC
Confidence 5555555555555444444 33444455554444
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=3.5e-17 Score=166.36 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=21.2
Q ss_pred cccceeccCCC----CccCCchhhcCccccEEEeee
Q 039808 4 SCNVEYVKMPP----QLISSGIISRLHALKTLSIVV 35 (358)
Q Consensus 4 l~~L~~l~L~~----~~ip~~~i~~L~~L~~L~l~~ 35 (358)
+.+|++|+++. +.+|...++++++|++|++++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 45677777766 245665566777777777766
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=9.9e-17 Score=159.61 Aligned_cols=301 Identities=10% Similarity=0.021 Sum_probs=175.5
Q ss_pred CcccceeccCCC---Cc------------------cCCchhh--cCccccEEEeeecCCCcceecccchhhhhhcCCCCC
Q 039808 3 LSCNVEYVKMPP---QL------------------ISSGIIS--RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTEL 59 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~------------------ip~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 59 (358)
-+++|++|+|+. .. +|+. ++ ++++|++|++++ +.+. ..++..++++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~-n~l~------~~~p~~l~~l~~L 275 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYN-CPNL------TKLPTFLKALPEM 275 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEEC-CTTC------SSCCTTTTTCSSC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecC-CcCC------ccChHHHhcCCCC
Confidence 367899999987 33 7776 46 999999999998 3221 3456789999999
Q ss_pred ceEEEEccC-ch--hHHHHHhhhcc-ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC---CChHHH
Q 039808 60 SSLCFHFPE-IK--LLELFLQRCVA-WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE---NIPDAV 132 (358)
Q Consensus 60 ~~L~~~~~~-l~--~l~~~~~~~~~-~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~ 132 (358)
++|++..+. ++ .+|..++.... ..+++|+.+.+. .+ .+..+|....+..+.+|+.|.+.++. .++ .
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~---~n--~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG---YN--NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC---SS--CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC---CC--cCCccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 999998776 65 47766653210 123778877762 21 12344432256667788888887764 344 3
Q ss_pred HhhccCccEEEeccCCCCCccCcccccCccC-CcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808 133 LQILACCTAFYLDNHLHINSLSDFGVRSING-LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV 211 (358)
Q Consensus 133 ~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 211 (358)
...+++|+.|++.++ .+..++. .+.++++ |++|++++|.. ..++... ....+++|++|+++++.-...++..-.
T Consensus 349 ~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~~L~~L~Ls~N~l-~~lp~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 349 FGSEIKLASLNLAYN-QITEIPA-NFCGFTEQVENLSFAHNKL-KYIPNIF--DAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CEEEEEESEEECCSS-EEEECCT-TSEEECTTCCEEECCSSCC-SSCCSCC--CTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hCCCCCCCEEECCCC-ccccccH-hhhhhcccCcEEEccCCcC-cccchhh--hhcccCccCEEECcCCcCCCcchhhhc
Confidence 445778888888887 6666665 4778888 88888888753 3444321 112244677777776543332211000
Q ss_pred --CCC--cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc-----------------------
Q 039808 212 --PNG--SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE----------------------- 264 (358)
Q Consensus 212 --~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~----------------------- 264 (358)
..+ .+++|++|+++++. ++.+ |...+..+++|+.|+++++. +..++....
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 000 33466666666653 3333 22344456666666666542 223331100
Q ss_pred -ccccccc--cCCCcceeccccccccccccCC--CCCCccEEeeeC------CcCCCccCCCCCCCCCeeEEEe
Q 039808 265 -IIDSGCT--ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYD------CPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 265 -~~~~~~~--~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~------C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
....... .+++|+.|+++++ .++.+|.. .+++|+.|++++ +.....+|..+..+++|+.+..
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 0002232 5666666666554 45555544 566666666643 3335556666666666666644
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.2e-15 Score=146.26 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=102.7
Q ss_pred cccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCC---------
Q 039808 111 FDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDG--------- 181 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------- 181 (358)
+..++.|+.|.+.++.-........+++|+.|++.++ .+..+.. ++.+++|++|++++|. +..+ +.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~ 247 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTD 247 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSE
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCC-cccc-hhhhcCCCCCE
Confidence 3344456666665543111112334555666665555 3333321 4445555555555442 1111 00
Q ss_pred ---------CCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808 182 ---------KELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED 252 (358)
Q Consensus 182 ---------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~ 252 (358)
.......+++|++|.++++.- ..+ + ..+.+++|+.|++++|. ++.+.+ ++.+++|+.|++++
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~---~-~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQI-SNI---S-PLAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYF 318 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCC-CCC---G-GGTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCS
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCcc-Ccc---c-cccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcC
Confidence 000023345555555555422 111 1 13345666666666653 443321 45667777777776
Q ss_pred CCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccc
Q 039808 253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSW 331 (358)
Q Consensus 253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~ 331 (358)
|. +..++ ....+++|+.|++++| .++.++.- .+++|+.|++++|. +..++. ...+++|+.+.....-
T Consensus 319 n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 319 NN-ISDIS--------PVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp SC-CSCCG--------GGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred Cc-CCCch--------hhccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 63 33322 2567888888888777 56665433 78888888888885 444433 5667778777654333
Q ss_pred ccc
Q 039808 332 WDD 334 (358)
Q Consensus 332 ~~~ 334 (358)
|.+
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 333
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=4.9e-16 Score=148.96 Aligned_cols=269 Identities=17% Similarity=0.211 Sum_probs=161.3
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV 80 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~ 80 (358)
+.+|++|+++. ..+|+ ++++.+|++|++++ +.+. ... .+.++++|++|++..+.+..++. +.
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~-n~l~-------~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~--- 131 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN-NQIA-------DIT-PLANLTNLTGLTLFNNQITDIDP-LK--- 131 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCC-------CCG-GGTTCTTCCEEECCSSCCCCCGG-GT---
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCC-Cccc-------cCh-hhcCCCCCCEEECCCCCCCCChH-Hc---
Confidence 45667777766 23343 56677777777766 2221 112 27888999999987777766543 23
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccC
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRS 160 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~ 160 (358)
.+++|+.+.+.... +...+ .+..+.+|+.|.+.+....... ...+++|+.|++.++ .+..++ .+..
T Consensus 132 --~l~~L~~L~l~~n~-----l~~~~---~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~--~l~~ 197 (466)
T 1o6v_A 132 --NLTNLNRLELSSNT-----ISDIS---ALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSN-KVSDIS--VLAK 197 (466)
T ss_dssp --TCTTCSEEEEEEEE-----ECCCG---GGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSS-CCCCCG--GGGG
T ss_pred --CCCCCCEEECCCCc-----cCCCh---hhccCCcccEeecCCcccCchh-hccCCCCCEEECcCC-cCCCCh--hhcc
Confidence 67888888873221 12222 4566678899988654322122 556899999999998 666665 4789
Q ss_pred ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhc
Q 039808 161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIH 240 (358)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~ 240 (358)
+++|++|++++|.... +.. ...+++|++|+++++. ++.+ ...+.+++|++|++++|. +....+ +.
T Consensus 198 l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~---~~ 262 (466)
T 1o6v_A 198 LTNLESLIATNNQISD-ITP-----LGILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQ-ISNLAP---LS 262 (466)
T ss_dssp CTTCSEEECCSSCCCC-CGG-----GGGCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCGG---GT
T ss_pred CCCCCEEEecCCcccc-ccc-----ccccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCc-cccchh---hh
Confidence 9999999999885332 211 3456777777776653 2222 112344555555555542 222211 34
Q ss_pred cCCCccEEEEecCC---------------------ccccccccccccccccccCCCcceeccccccccccccCC-CCCCc
Q 039808 241 FMSNLEDLTVEDCP---------------------AIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSL 298 (358)
Q Consensus 241 ~l~~L~~L~i~~c~---------------------~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L 298 (358)
.+++|+.|++++|. .+..++ ....+++|+.|++++| .++.++.. .+++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 333 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--------PISNLKNLTYLTLYFN-NISDISPVSSLTKL 333 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG--------GGGGCTTCSEEECCSS-CCSCCGGGGGCTTC
T ss_pred cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch--------hhcCCCCCCEEECcCC-cCCCchhhccCccC
Confidence 44555555554432 122221 2556777777777766 45544433 77888
Q ss_pred cEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808 299 EYVSFYDCPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 299 ~~L~i~~C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
++|++++| +++.+| ....+++|+.+..
T Consensus 334 ~~L~l~~n-~l~~~~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 334 QRLFFYNN-KVSDVS-SLANLTNINWLSA 360 (466)
T ss_dssp CEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred CEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence 88888887 466664 4456677777754
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-16 Score=158.32 Aligned_cols=282 Identities=15% Similarity=0.139 Sum_probs=183.8
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~ 79 (358)
+.++++++++. ..+|+.+++++++|++|++++ +.+.. ..+..+.++++|++|++..+.+..++.. ++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-- 120 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-SCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHc--
Confidence 45677787776 568888888999999999988 33321 1234678889999999877777665421 12
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFG 157 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 157 (358)
.+++|+.+.+. .+ .+..+|. ..+..+.+|+.|.+.++. +++......+++|+.|++.++ .+..++
T Consensus 121 ---~l~~L~~L~L~---~n--~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--- 187 (597)
T 3oja_B 121 ---NVPLLTVLVLE---RN--DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--- 187 (597)
T ss_dssp ---TCTTCCEEECC---SS--CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---
T ss_pred ---CCCCCCEEEee---CC--CCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---
Confidence 45667766652 11 1233332 234566788888887764 445444566788888888887 555543
Q ss_pred ccCccCCcEEEeecCCCceEecCCC-------------CccccCCCccceeecccccccccccccccCCCcCccccEEeE
Q 039808 158 VRSINGLKFCIISECPKIETVVDGK-------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSV 224 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 224 (358)
++.+++|+.|++++|.. ..+.... ......+++|+.|.++++.- .. +...+.+++|+.|++
T Consensus 188 ~~~l~~L~~L~l~~n~l-~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~----~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD----TAWLLNYPGLVEVDL 261 (597)
T ss_dssp GGGCTTCSEEECCSSCC-SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CC----CGGGGGCTTCSEEEC
T ss_pred hhhhhhhhhhhcccCcc-ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC-CC----ChhhccCCCCCEEEC
Confidence 55666666666665522 2111000 00012235777777777642 22 123456788999999
Q ss_pred ecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEe
Q 039808 225 HACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVS 302 (358)
Q Consensus 225 ~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~ 302 (358)
+++. +....| ..++.+++|+.|+++++ .+..++ .....+|+|+.|+++++ .+..++.. .+++|+.|+
T Consensus 262 s~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~-------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 262 SYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALN-------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp CSSC-CCEEES-GGGTTCSSCCEEECTTS-CCCEEE-------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCCc-cCCCCH-HHhcCccCCCEEECCCC-CCCCCC-------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEE
Confidence 8874 555434 34678899999999886 455554 34567899999999877 67777766 789999999
Q ss_pred eeCCcCCCccCCCCCCCCCeeEEEe
Q 039808 303 FYDCPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 303 i~~C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
+++|. +..+| ...+++|+.+..
T Consensus 331 L~~N~-l~~~~--~~~~~~L~~L~l 352 (597)
T 3oja_B 331 LDHNS-IVTLK--LSTHHTLKNLTL 352 (597)
T ss_dssp CCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred CCCCC-CCCcC--hhhcCCCCEEEe
Confidence 99985 77776 445677877753
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=4.9e-17 Score=160.80 Aligned_cols=287 Identities=14% Similarity=0.078 Sum_probs=191.6
Q ss_pred cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhhhcc
Q 039808 6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQRCVA 81 (358)
Q Consensus 6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~ 81 (358)
+|+.++++. ..+++..++++++|++|++++ +.+ ..++..+.++++|++|.+..+.+..++ ..+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~---- 322 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THL-------SELPSGLVGLSTLKKLVLSANKFENLCQISAS---- 322 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-SCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG----
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccC-Ccc-------CCCChhhcccccCCEEECccCCcCcCchhhhh----
Confidence 678888877 457777788999999999998 333 344556889999999999777766543 2222
Q ss_pred ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh--HHHHhhccCccEEEeccCCCCCccCccc
Q 039808 82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP--DAVLQILACCTAFYLDNHLHINSLSDFG 157 (358)
Q Consensus 82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~--~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 157 (358)
.+++|+.+.+. .+ ......+. ..+..+.+|+.|.+.++. +.. ......+++|+.|++.++ .+..+....
T Consensus 323 -~l~~L~~L~l~---~n-~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 395 (606)
T 3t6q_A 323 -NFPSLTHLSIK---GN-TKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA 395 (606)
T ss_dssp -GCTTCSEEECC---SC-SSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT
T ss_pred -ccCcCCEEECC---CC-Ccccccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHH
Confidence 56778877762 11 00012221 245667788999987764 222 223456889999999988 666654446
Q ss_pred ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccc-cCch
Q 039808 158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKF-VFSS 236 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~ 236 (358)
++++++|++|++++|......+.. ....+++|++|+++++.-.... +...+.+++|++|++++|.--.. +...
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDISS---EQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCC---TTTTCTTCCEEECTTCCCBTTC---TTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred hcCCccCCeEECCCCcCCCcccch---hhhCcccCCEEECCCCccCCcC---HHHHhCCCCCCEEECCCCCCCccccccc
Confidence 888999999999887433222111 1456789999999887543322 22345688999999998853321 1122
Q ss_pred hhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808 237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP 313 (358)
..++.+++|+.|++++|. +..++ ...+..+++|+.|+++++ .++..... .+++| .|++++|. ++.+|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~-l~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~ 539 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCD-LSSID------QHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNH-ISIIL 539 (606)
T ss_dssp CGGGGCTTCCEEECTTSC-CCEEC------TTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSC-CCCCC
T ss_pred hhhccCCCccEEECCCCc-cCccC------hhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCc-ccccC
Confidence 346789999999999884 33332 135778899999999887 56555444 78888 99999985 55554
Q ss_pred C-CCCCCCCeeEEEe
Q 039808 314 L-GSNLKHSVMEIKA 327 (358)
Q Consensus 314 ~-~~~~~~~L~~~~~ 327 (358)
. .+..+++|+.+.-
T Consensus 540 ~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 540 PSLLPILSQQRTINL 554 (606)
T ss_dssp GGGHHHHHTSSEEEC
T ss_pred HhhcccCCCCCEEeC
Confidence 3 3455667777653
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3.8e-16 Score=146.20 Aligned_cols=261 Identities=14% Similarity=0.109 Sum_probs=172.1
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHH-hhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFL-QRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~-~~~ 79 (358)
+.+|++|+++. ..+++..++++.+|++|++++ +.+.. ..+..+.++++|++|++..+.+..++..+ +
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-- 138 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFH-- 138 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCc------CCHHHhcCCCCCCEEECCCCccCcCCHHHhc--
Confidence 57899999987 456766678999999999998 33321 11345788999999999877777665321 2
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc--
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-- 155 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-- 155 (358)
.+++|+.+.+. .+ .+...+. ..+..+++|+.|.+.++. .++ ...+++++.+++.++ .+..++.
T Consensus 139 ---~l~~L~~L~L~---~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~ 205 (390)
T 3o6n_A 139 ---NTPKLTTLSMS---NN--NLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-LLSTLAIPI 205 (390)
T ss_dssp ---TCTTCCEEECC---SS--CCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS-CCSEEECCS
T ss_pred ---CCCCCcEEECC---CC--ccCccCh-hhccCCCCCCEEECCCCcCCccc---cccccccceeecccc-cccccCCCC
Confidence 46677777752 11 0122221 245566788888887764 222 234556666665554 2222110
Q ss_pred --------------ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccE
Q 039808 156 --------------FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRI 221 (358)
Q Consensus 156 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 221 (358)
.+...+++|+.|++++|... .. .....+++|++|+++++.-.... +...+.+++|++
T Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~-----~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~ 276 (390)
T 3o6n_A 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DT-----AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLER 276 (390)
T ss_dssp SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CC-----GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCE
T ss_pred cceEEECCCCeeeeccccccccccEEECCCCCCc-cc-----HHHcCCCCccEEECCCCcCCCcC---hhHccccccCCE
Confidence 01123456777777766332 21 12567899999999987533221 233457899999
Q ss_pred EeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEE
Q 039808 222 LSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYV 301 (358)
Q Consensus 222 L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L 301 (358)
|+++++ +++.++ .....+++|+.|++++| .+..++ .....+++|+.|+++++ .++.++...+++|++|
T Consensus 277 L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L 344 (390)
T 3o6n_A 277 LYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVE-------RNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 344 (390)
T ss_dssp EECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCG-------GGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEE
T ss_pred EECCCC-cCcccC--cccCCCCCCCEEECCCC-cceecC-------ccccccCcCCEEECCCC-ccceeCchhhccCCEE
Confidence 999997 466552 23467899999999998 565655 34677899999999887 5777765589999999
Q ss_pred eeeCCc
Q 039808 302 SFYDCP 307 (358)
Q Consensus 302 ~i~~C~ 307 (358)
++++++
T Consensus 345 ~l~~N~ 350 (390)
T 3o6n_A 345 TLSHND 350 (390)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 999975
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=3.2e-16 Score=152.20 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=79.0
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc-hhhhccCCCccEEEEecCCccccccccc---
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS-SFMIHFMSNLEDLTVEDCPAIEEIISEG--- 263 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~i~~c~~l~~i~~~~--- 263 (358)
.+++|++|+++++.-...+ +...+.+++|++|++++|. ++.+.. +..++.+++|+.|+++++.-...++...
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTV---FENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTT---TTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhh---hhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 4566777777665433222 2223456667777776653 332211 1234566666666666653322132110
Q ss_pred --c---------cc-ccccccC-CCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 264 --E---------II-DSGCTAL-PRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 264 --~---------~~-~~~~~~l-~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
. .. ......+ ++|+.|+++++ .++.+|.. .+++|++|++++| +++.+|.. +..+++|+.++.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 0 00 0011122 68888888776 67777766 8899999999998 58899987 677888988864
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=1.9e-16 Score=154.69 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=35.6
Q ss_pred cCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 272 ALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 272 ~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
.+++|+.|+++++ .++.+|.. .+++|+.|++++| +++.+|.. +..+++|+.++.
T Consensus 449 ~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 449 FLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred cCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence 5666777777665 56666655 6777788888776 46666544 556777777754
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=3.7e-16 Score=155.49 Aligned_cols=255 Identities=12% Similarity=0.022 Sum_probs=154.8
Q ss_pred hhhhhcCCCCCceEEEEccCchh------------------HHHHHhhhccccccccceEEEEEeCccccccccCCcccc
Q 039808 49 VVLEVCNLTELSSLCFHFPEIKL------------------LELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVA 110 (358)
Q Consensus 49 ~~~~l~~l~~L~~L~~~~~~l~~------------------l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~ 110 (358)
++..++++++|++|++..+.++. +|..++ .-.+++|+.+.+...... ...|. .
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~----~~~p~--~ 268 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNL----TKLPT--F 268 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTC----SSCCT--T
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh---hcccCCCCEEEecCCcCC----ccChH--H
Confidence 56779999999999999888776 553222 004677887777322111 34453 6
Q ss_pred cccccCCceEEeeCCC-----CChHHHHhh-----ccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCCCceEec
Q 039808 111 FDYNKQGKCLRFINGE-----NIPDAVLQI-----LACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECPKIETVV 179 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~-----~~~~~~~~~-----l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~ 179 (358)
+..+++|+.|.+.++. .+|..+... +++|+.|++.++ .+..++. ..++++++|++|++++|.....++
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 7777899999998875 244444332 489999999998 6667765 148899999999999886544664
Q ss_pred CCCCccccCCCccceeecccccccccccccccCCCcCcc-ccEEeEecCCCccccCchhhhcc--CCCccEEEEecCCcc
Q 039808 180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFAR-LRILSVHACPKLKFVFSSFMIHF--MSNLEDLTVEDCPAI 256 (358)
Q Consensus 180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~l~~--l~~L~~L~i~~c~~l 256 (358)
. ...+++|++|.++++.- ..+ +...+.+++ |++|+++++. ++.++. .+.. +++|+.|+++++.-.
T Consensus 348 -~----~~~l~~L~~L~L~~N~l-~~l---p~~l~~l~~~L~~L~Ls~N~-l~~lp~--~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 348 -A----FGSEIKLASLNLAYNQI-TEI---PANFCGFTEQVENLSFAHNK-LKYIPN--IFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp -C----CEEEEEESEEECCSSEE-EEC---CTTSEEECTTCCEEECCSSC-CSSCCS--CCCTTCSSCEEEEECCSSCTT
T ss_pred -h----hCCCCCCCEEECCCCcc-ccc---cHhhhhhcccCcEEEccCCc-Ccccch--hhhhcccCccCEEECcCCcCC
Confidence 2 45567777777766532 233 222344556 6667666653 333321 1222 235556655554322
Q ss_pred cccccc--------------------c---ccccc-ccccCCCcceeccccccccccccCC---CCC-------CccEEe
Q 039808 257 EEIISE--------------------G---EIIDS-GCTALPRLKKLTLHYLPGLVTIWSS---AWP-------SLEYVS 302 (358)
Q Consensus 257 ~~i~~~--------------------~---~~~~~-~~~~l~~L~~L~l~~c~~L~~~~~~---~~~-------~L~~L~ 302 (358)
..++.. . ..... ....+++|+.|+++++ .++.++.. ... +|++|+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEE
Confidence 211100 0 00001 1234677888888665 56666655 122 788888
Q ss_pred eeCCcCCCccCCCCC--CCCCeeEEEe
Q 039808 303 FYDCPRLKNIGLGSN--LKHSVMEIKA 327 (358)
Q Consensus 303 i~~C~~L~~lP~~~~--~~~~L~~~~~ 327 (358)
+++| +++.+|.... .+++|+.+.-
T Consensus 495 Ls~N-~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 495 LRFN-KLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CCSS-CCCBCCGGGSTTTCTTCCEEEC
T ss_pred CcCC-cCCccChhhhhccCCCcCEEEC
Confidence 8887 4667887765 6778887754
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=4.9e-16 Score=152.39 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=43.4
Q ss_pred CCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 274 PRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
++|+.|+++++ .++.+|.. .+++|++|+++++ +++.+|.. ...+++|+.++.
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence 68999999877 78888877 7899999999997 58899988 677888888764
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=4.7e-16 Score=153.78 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=31.4
Q ss_pred cccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCC-ccCCCCCCCCCeeEEEe
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLK-NIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~-~lP~~~~~~~~L~~~~~ 327 (358)
+..+++|+.|++++|.-....+.. .+++|++|++++|.--. .+|.....+++|+.+..
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 445566666666555322222222 56667777776664333 25666666666666643
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=6.5e-16 Score=150.91 Aligned_cols=296 Identities=11% Similarity=0.074 Sum_probs=153.4
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhhc
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRCV 80 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~~ 80 (358)
.+|++|+++. +.+++..++++++|++|++++ +.+.. ..+..+.++++|++|+++.+.+..++.. ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--- 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG--- 95 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHT---
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCc------cChhhccccccCCEEECCCCccCccCHHHhc---
Confidence 4677888876 334445567888888888887 33321 1134577777888887766666554432 33
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC---CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE---NIPDAVLQILACCTAFYLDNHLHINSLSDFG 157 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 157 (358)
.+++|+.+.+ ..+ .+...+....+..+++|+.|.+.++. .++......+++|+.|++.++ .+.......
T Consensus 96 --~l~~L~~L~L---s~n--~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 167 (549)
T 2z81_A 96 --PLSSLKYLNL---MGN--PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQS 167 (549)
T ss_dssp --TCTTCCEEEC---TTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTT
T ss_pred --cCCCCcEEEC---CCC--cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhh
Confidence 4556666654 111 01111111245556667777776653 222233444667777777666 443322223
Q ss_pred ccCcc------------------------CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccc---------
Q 039808 158 VRSIN------------------------GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLT--------- 204 (358)
Q Consensus 158 l~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--------- 204 (358)
+++++ +|++|++++|......... ......+++|++|.+.++.-..
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchhHHHHHHHH
Confidence 44444 4444444444221110000 0001223455555544332100
Q ss_pred --------cccc----------cc----cCCCc-----------------------------CccccEEeEecCCCcccc
Q 039808 205 --------HICE----------GS----VPNGS-----------------------------FARLRILSVHACPKLKFV 233 (358)
Q Consensus 205 --------~~~~----------~~----~~~~~-----------------------------~~~L~~L~l~~c~~l~~l 233 (358)
.+.. .+ ..... +++|++|++.++. ++.+
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccC
Confidence 0000 00 00011 2345555555542 3333
Q ss_pred CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC--C---CCCCccEEeeeCCcC
Q 039808 234 FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS--S---AWPSLEYVSFYDCPR 308 (358)
Q Consensus 234 ~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~--~---~~~~L~~L~i~~C~~ 308 (358)
|..+++.+++|+.|+++++.-...++.. ....+.+++|+.|+++++ .++.++. . .+++|++|++++| +
T Consensus 326 -p~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~ 398 (549)
T 2z81_A 326 -PCSFSQHLKSLEFLDLSENLMVEEYLKN----SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-T 398 (549)
T ss_dssp -CHHHHHHCTTCCEEECCSSCCCHHHHHH----HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-C
T ss_pred -CHHHHhcCccccEEEccCCccccccccc----hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-C
Confidence 3334456888888888877544333200 012466788888888776 5665542 1 6788888888887 5
Q ss_pred CCccCCCCCCCCCeeEEEe
Q 039808 309 LKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 309 L~~lP~~~~~~~~L~~~~~ 327 (358)
++.+|.....+++|+.+..
T Consensus 399 l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 399 FHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp CCCCCSCCCCCTTCCEEEC
T ss_pred CccCChhhcccccccEEEC
Confidence 7778877766777777654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.1e-15 Score=150.98 Aligned_cols=261 Identities=14% Similarity=0.112 Sum_probs=172.6
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHH-hhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFL-QRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~-~~~ 79 (358)
+.+|++|+|+. ..+++..++.+.+|++|++++ +.+.. ..+..++++++|++|++..+.+..++..+ +
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-- 144 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFH-- 144 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc--
Confidence 56899999987 446666678999999999998 33322 11345788999999999888777665421 2
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc--
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-- 155 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-- 155 (358)
.+++|+.+.+. .+ .+...+. ..+..++.|+.|.+.++. +++ ...+++|+.|++.++ .+..++.
T Consensus 145 ---~l~~L~~L~Ls---~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n-~l~~l~~~~ 211 (597)
T 3oja_B 145 ---NTPKLTTLSMS---NN--NLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-LLSTLAIPI 211 (597)
T ss_dssp ---TCTTCCEEECC---SS--CCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS-CCSEEECCT
T ss_pred ---cCCCCCEEEee---CC--cCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC-ccccccCCc
Confidence 46677777652 11 0122221 245666788888887764 222 234566666666555 3322110
Q ss_pred --------------ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccE
Q 039808 156 --------------FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRI 221 (358)
Q Consensus 156 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 221 (358)
......++|+.|++++|.... . .....+++|++|+++++.-.... +..++.+++|+.
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~-----~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~ 282 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-T-----AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLER 282 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-C-----GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCE
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCC-C-----hhhccCCCCCEEECCCCccCCCC---HHHhcCccCCCE
Confidence 001122456666666653221 1 12567899999999987543332 333567899999
Q ss_pred EeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEE
Q 039808 222 LSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYV 301 (358)
Q Consensus 222 L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L 301 (358)
|+++++ .++.++ .....+++|+.|++++| .+..++ .....+++|+.|+++++ .+..++...+++|+.|
T Consensus 283 L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N-~l~~i~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L 350 (597)
T 3oja_B 283 LYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVE-------RNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 350 (597)
T ss_dssp EECTTS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCG-------GGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEE
T ss_pred EECCCC-CCCCCC--cccccCCCCcEEECCCC-CCCccC-------cccccCCCCCEEECCCC-CCCCcChhhcCCCCEE
Confidence 999997 466552 23467999999999997 444555 35678999999999887 5777765589999999
Q ss_pred eeeCCc
Q 039808 302 SFYDCP 307 (358)
Q Consensus 302 ~i~~C~ 307 (358)
++++++
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 999986
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.6e-15 Score=149.91 Aligned_cols=57 Identities=16% Similarity=-0.051 Sum_probs=42.0
Q ss_pred ccccCCCcceecccccccccccc-CC--CCCCccEEeeeCCcCCCccCCCCCCCC-CeeEEEe
Q 039808 269 GCTALPRLKKLTLHYLPGLVTIW-SS--AWPSLEYVSFYDCPRLKNIGLGSNLKH-SVMEIKA 327 (358)
Q Consensus 269 ~~~~l~~L~~L~l~~c~~L~~~~-~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~-~L~~~~~ 327 (358)
.+..+++|+.|+++++ .++.+. .. .+++|++|++++|. ++.+|..+..++ +|+.+..
T Consensus 492 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEEC
T ss_pred hhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEc
Confidence 4667788888888777 455553 33 68889999998885 888888876665 5887764
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=2.3e-16 Score=143.32 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=97.4
Q ss_pred cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCC-ccCcccccCcc-CCcEEEeecCCCceEecCCCCccc
Q 039808 111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHIN-SLSDFGVRSIN-GLKFCIISECPKIETVVDGKELTT 186 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~ 186 (358)
+..+++|+.|.+.++. +..+.....+++|+.|++.++ .+. .++. .++.++ +|++|++++|.....++.. .
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~----~ 194 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPT----F 194 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGG----G
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCH-HHhhhhhcCcEEECcCCeeeccCChH----H
Confidence 3344456666665543 122223344667777777666 443 3443 466665 7777777766433233222 2
Q ss_pred cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808 187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII 266 (358)
Q Consensus 187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 266 (358)
..+. |++|+++++.-.... +...+.+++|+.|+++++. +...++ .+..+++|++|+++++.-...++
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p------ 261 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDA---SVLFGSDKNTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNRIYGTLP------ 261 (313)
T ss_dssp GGCC-CSEEECCSSEEEECC---GGGCCTTSCCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSCCEECCC------
T ss_pred hCCc-ccEEECcCCcccCcC---CHHHhcCCCCCEEECCCCc-eeeecC--cccccCCCCEEECcCCcccCcCC------
Confidence 2333 777777665432221 2223456677777776653 332212 24556777777777664333333
Q ss_pred ccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccC
Q 039808 267 DSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP 313 (358)
..+..+++|+.|+++++.--..+|.. .+++|+.+++.+++.+-..|
T Consensus 262 -~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 262 -QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred -hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 34556677777777666322244444 56677777777766555444
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=3.7e-15 Score=136.20 Aligned_cols=259 Identities=16% Similarity=0.186 Sum_probs=134.5
Q ss_pred CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808 3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL-ELFLQR 78 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~ 78 (358)
+.++++.++++. +.+|..+ .++|++|++++ +.+... ....+.++++|++|++..+.+..+ +..++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 97 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQN-NKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFA- 97 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSC---CTTCCEEECCS-SCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTT-
T ss_pred CcCCCeEEEecCCCccccCccC---CCCCeEEECCC-CcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhc-
Confidence 456788888876 5577654 36899999998 444322 123588999999999977766654 32222
Q ss_pred hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCc--cC
Q 039808 79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINS--LS 154 (358)
Q Consensus 79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--l~ 154 (358)
.+++|+.+.+. .+ .+..+|. .+ .+.|+.|.+.++. .++......+++|+.|++.++ .+.. ..
T Consensus 98 ----~l~~L~~L~Ls---~n--~l~~l~~--~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 163 (330)
T 1xku_A 98 ----PLVKLERLYLS---KN--QLKELPE--KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIE 163 (330)
T ss_dssp ----TCTTCCEEECC---SS--CCSBCCS--SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBC
T ss_pred ----CCCCCCEEECC---CC--cCCccCh--hh--cccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcC
Confidence 34556655541 11 0122222 11 1356666665543 333444455666666666655 3322 22
Q ss_pred cccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccC
Q 039808 155 DFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF 234 (358)
Q Consensus 155 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 234 (358)
...+.++++|++|++++|. +..++.. .+++|++|+++++. ++.+. +...+.+++|++|+++++. ++.+.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~-l~~l~~~------~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~ 232 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTN-ITTIPQG------LPPSLTELHLDGNK-ITKVD--AASLKGLNNLAKLGLSFNS-ISAVD 232 (330)
T ss_dssp TTGGGGCTTCCEEECCSSC-CCSCCSS------CCTTCSEEECTTSC-CCEEC--TGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred hhhccCCCCcCEEECCCCc-cccCCcc------ccccCCEEECCCCc-CCccC--HHHhcCCCCCCEEECCCCc-CceeC
Confidence 2245566666666666553 2222211 22566666665543 22211 1123345566666665543 33332
Q ss_pred chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---------CCCCccEEeeeC
Q 039808 235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---------AWPSLEYVSFYD 305 (358)
Q Consensus 235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---------~~~~L~~L~i~~ 305 (358)
+ ..+..+++|+.|+++++ .+..++ ..+..+++|+.|+++++ .++.++.. ..++|+.+++.+
T Consensus 233 ~-~~~~~l~~L~~L~L~~N-~l~~lp-------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 233 N-GSLANTPHLRELHLNNN-KLVKVP-------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp T-TTGGGSTTCCEEECCSS-CCSSCC-------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred h-hhccCCCCCCEEECCCC-cCccCC-------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeec
Confidence 2 23445566666666655 333443 23445566666666544 35544433 124555566655
Q ss_pred Cc
Q 039808 306 CP 307 (358)
Q Consensus 306 C~ 307 (358)
+|
T Consensus 303 N~ 304 (330)
T 1xku_A 303 NP 304 (330)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=6.1e-16 Score=151.68 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=65.5
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc-ccccccccccccccccCCCcceeccccccccccccC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI-EEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS 292 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l-~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 292 (358)
+.+++|++|++++|. +....+ ..+..+++|+.|++++|.-. ..++ ..+..+++|+.|++++| .++.+..
T Consensus 418 ~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n-~l~~~~~ 487 (570)
T 2z63_A 418 LSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSP 487 (570)
T ss_dssp TTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECT
T ss_pred hcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCC-ccccCCh
Confidence 345566666666553 222222 23455666666666665432 1232 35677889999999877 5666633
Q ss_pred -C--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 293 -S--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 293 -~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
. .+++|++|++++| +++.+|.. +..+++|+.++.
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEe
Confidence 3 7899999999998 47777654 567888888864
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.4e-15 Score=144.95 Aligned_cols=123 Identities=13% Similarity=0.012 Sum_probs=74.3
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA 81 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~ 81 (358)
.+|++|+++. ..++++.++++++|++|++++ +.+.. ..+..++++++|++|++..+.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH------ 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC------
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCC-CccCC------cChHHhhcccCCCEEecCCCceeecCcc------
Confidence 5678888877 335555577888888888887 33321 1245678888888888877777766531
Q ss_pred ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCc--cEEEeccC
Q 039808 82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACC--TAFYLDNH 147 (358)
Q Consensus 82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~ 147 (358)
.+++|+.+.+. .+ .+...+....+..+++|+.|.+.++.- .......++++ +.|++.++
T Consensus 88 -~l~~L~~L~L~---~N--~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 88 -PTVNLKHLDLS---FN--AFDALPICKEFGNMSQLKFLGLSTTHL-EKSSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp -CCCCCSEEECC---SS--CCSSCCCCGGGGGCTTCCEEEEEESSC-CGGGGGGGTTSCEEEEEEEEC
T ss_pred -ccCCccEEecc---CC--ccccccchhhhccCCcceEEEecCccc-chhhccccccceeeEEEeecc
Confidence 45667766652 11 012211113566667778888776542 22233445666 77777665
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=4.6e-15 Score=145.45 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=63.6
Q ss_pred CcCccccEEeEecCCCccccCc-hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808 214 GSFARLRILSVHACPKLKFVFS-SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS 292 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 292 (358)
+.+++|++|+++++ +++.+.. +..++.+++|+.|+++++.--..++. .....+++|+.|+++++. ++....
T Consensus 374 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~ 445 (562)
T 3a79_B 374 STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------RTCAWAESILVLNLSSNM-LTGSVF 445 (562)
T ss_dssp CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS------CCCCCCTTCCEEECCSSC-CCGGGG
T ss_pred cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh------hhhcCcccCCEEECCCCC-CCcchh
Confidence 34556666666554 3333221 12245566666666665532221320 124566788888887763 432222
Q ss_pred CCC-CCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808 293 SAW-PSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE 328 (358)
Q Consensus 293 ~~~-~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~ 328 (358)
..+ ++|++|++++| +++.+|.+...+++|+.++-.
T Consensus 446 ~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 446 RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence 233 69999999998 688999988888899988653
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=6.4e-16 Score=157.63 Aligned_cols=302 Identities=11% Similarity=0.035 Sum_probs=180.1
Q ss_pred CcccceeccCCC----CccCCchhhcCccccEEEeeecCCCcc--eecccchhhhhhcCCCCCceEEEEccCchhHHH--
Q 039808 3 LSCNVEYVKMPP----QLISSGIISRLHALKTLSIVVYPGDKR--WYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-- 74 (358)
Q Consensus 3 ~l~~L~~l~L~~----~~ip~~~i~~L~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-- 74 (358)
.+.+|++|+|+. ..+|.. ++++++|++|+++++..+.. .+.........+..+++|+.|++..+.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 578899999986 456755 68999999999998221431 111111111133455688888887777776665
Q ss_pred HHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccC-ccEEEeccCCCCC
Q 039808 75 FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILAC-CTAFYLDNHLHIN 151 (358)
Q Consensus 75 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~-L~~L~l~~~~~~~ 151 (358)
.++ .+++|+.+.+ ..+ .+..+| .+..+++|+.|.+.++. .++.+ ...+++ |+.|++.++ .+.
T Consensus 568 ~l~-----~L~~L~~L~L---s~N--~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~L~ 632 (876)
T 4ecn_A 568 SLQ-----KMVKLGLLDC---VHN--KVRHLE---AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHN-KLK 632 (876)
T ss_dssp HHT-----TCTTCCEEEC---TTS--CCCBCC---CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSS-CCC
T ss_pred hhh-----cCCCCCEEEC---CCC--Ccccch---hhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCC-CCC
Confidence 444 4666776665 221 112333 44555567777776653 33333 233555 777777777 455
Q ss_pred ccCcccccCcc--CCcEEEeecCCCceEecCCC-------------------------CccccCCCccceeecccccccc
Q 039808 152 SLSDFGVRSIN--GLKFCIISECPKIETVVDGK-------------------------ELTTVIFPSLENLSIHHLWNLT 204 (358)
Q Consensus 152 ~l~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~-------------------------~~~~~~l~~L~~L~l~~~~~l~ 204 (358)
.++. .+..+. +|+.|++++|.....++... ......+++|+.|+++++. +.
T Consensus 633 ~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 633 YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS
T ss_pred cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC
Confidence 5553 233332 36666666654322111000 0001235677777776652 33
Q ss_pred cccccccC-----CCcCccccEEeEecCCCccccCchhhh-ccCCCccEEEEecCCccccccccccccccccccCCCcce
Q 039808 205 HICEGSVP-----NGSFARLRILSVHACPKLKFVFSSFMI-HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKK 278 (358)
Q Consensus 205 ~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~l~~~~~l-~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~ 278 (358)
.++..... .+.+++|+.|++++| +++.+ |..+. ..+++|+.|+++++ .+..++ ..+..+++|+.
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~~ 780 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSSFP-------TQPLNSSQLKA 780 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSSCC-------CGGGGCTTCCE
T ss_pred ccChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCccc-------hhhhcCCCCCE
Confidence 33221111 112348999999887 46655 32222 38899999999987 444455 45778999999
Q ss_pred ecccc------ccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccccccc
Q 039808 279 LTLHY------LPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDL 335 (358)
Q Consensus 279 L~l~~------c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~~~~l 335 (358)
|++++ +.-...+|.. .+++|+.|++++|. ++.+|.... ++|+.++-...-+..+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCCcc
Confidence 99976 3334455555 79999999999996 599999865 5888887654444333
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=8.5e-15 Score=150.30 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=68.6
Q ss_pred CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808 190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG 269 (358)
Q Consensus 190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 269 (358)
++|++|+++++.-. .+. +...+.+++|+.|++.++. +..+.+ ..+..+++|+.|+++++. +..+. ...
T Consensus 266 ~~L~~L~Ls~n~l~-~~~--~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLN--SRVFETLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNL-LGELY------SSN 333 (844)
T ss_dssp SCCCEEECTTCCCC-EEC--SCCSSSCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCC-CSCCC------SCS
T ss_pred CCccEEECCCCccc-ccC--hhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCC-CCccC------HHH
Confidence 46777777665322 221 2234567788888888763 454433 345678888888888763 33322 134
Q ss_pred cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP 313 (358)
+..+++|+.|+++++ .++.++.. .+++|+.|++++|. ++.+|
T Consensus 334 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~ 378 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH 378 (844)
T ss_dssp CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCS
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCccc
Confidence 667788888888766 56666554 57788888887763 55544
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=4.9e-15 Score=140.93 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=140.2
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV 94 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~ 94 (358)
+.+|.++ ..++++|++++ +.+... ....+.++++|++|++..+.+..++.
T Consensus 56 ~~iP~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~i~~-------------------- 105 (440)
T 3zyj_A 56 REVPDGI---STNTRLLNLHE-NQIQII------KVNSFKHLRHLEILQLSRNHIRTIEI-------------------- 105 (440)
T ss_dssp SSCCSCC---CTTCSEEECCS-CCCCEE------CTTTTSSCSSCCEEECCSSCCCEECG--------------------
T ss_pred CcCCCCC---CCCCcEEEccC-CcCCee------CHHHhhCCCCCCEEECCCCcCCccCh--------------------
Confidence 4567764 36788888887 333221 13467888888888886666554431
Q ss_pred eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
..+..+.+|+.|.+.++. .++...+..+++|+.|++.++ .+..++...+.++++|++|++++|
T Consensus 106 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 106 --------------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp --------------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC
T ss_pred --------------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCC
Confidence 122233355555555542 333334445667777777776 566665555677777777777777
Q ss_pred CCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808 173 PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED 252 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~ 252 (358)
..+..++... ...+++|++|+++++ .++.++ ....+++|++|+++++ .++.+.+ ..+..+++|+.|++++
T Consensus 171 ~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 171 KRLSYISEGA---FEGLSNLRYLNLAMC-NLREIP----NLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp TTCCEECTTT---TTTCSSCCEEECTTS-CCSSCC----CCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTT
T ss_pred CCcceeCcch---hhcccccCeecCCCC-cCcccc----ccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCC
Confidence 6666664432 445677777777765 333332 2445677777777776 4555433 3456677777777776
Q ss_pred CCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
+ .+..+. ...+..+++|+.|+++++ .++.++.. .+++|+.|+++++|
T Consensus 241 n-~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 S-QIQVIE------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCCEEC------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-ceeEEC------hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 5 333332 124556777777777665 56666655 56777777777654
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=146.34 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=93.4
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. .++. ..+++|+.|++.++......+ ...+++|++|++++|.... ... .......+++|+
T Consensus 305 ~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSF-KGC-CSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBE-EEE-EEHHHHTCSCCC
T ss_pred CccEEeeccCcccccCc---ccccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCc-ccc-ccccccccCccC
Confidence 56666666553 2222 245566666666653222222 2556666666666653222 100 000133456666
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL 273 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l 273 (358)
+|+++++... .+. ...+.+++|++|++.+|. +....+...+..+++|+.|++++|.-....+ ..+..+
T Consensus 377 ~L~l~~n~l~-~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l 444 (570)
T 2z63_A 377 YLDLSFNGVI-TMS---SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------GIFNGL 444 (570)
T ss_dssp EEECCSCSEE-EEE---EEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT-------TTTTTC
T ss_pred EEECCCCccc-ccc---ccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch-------hhhhcC
Confidence 6666655322 211 113345666666666543 3322222234556666666666653322222 234556
Q ss_pred CCcceecccccccc-ccccCC--CCCCccEEeeeCCcCCCcc-CCCCCCCCCeeEEEe
Q 039808 274 PRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFYDCPRLKNI-GLGSNLKHSVMEIKA 327 (358)
Q Consensus 274 ~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~~C~~L~~l-P~~~~~~~~L~~~~~ 327 (358)
++|+.|++++|.-. ..++.. .+++|++|++++|. ++.+ |..+..+++|+.+..
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeC
Confidence 66666666655322 133433 56666666666664 3333 555555666666543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=4.6e-15 Score=141.73 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=73.7
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV 80 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~ 80 (358)
+.+|++|+++. ..+|. ++++++|++|++++ +.+... .++++++|++|++..+.++.++ ++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~-n~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~--~~--- 103 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS-NNITTL---------DLSQNTNLTYLACDSNKLTNLD--VT--- 103 (457)
T ss_dssp HTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCS-SCCSCC---------CCTTCTTCSEEECCSSCCSCCC--CT---
T ss_pred cCCCCEEEccCCCcccChh--hcccCCCCEEEccC-CcCCeE---------ccccCCCCCEEECcCCCCceee--cC---
Confidence 56788888887 33553 67888888888887 344321 2667777777777666655543 12
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV 158 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l 158 (358)
.+++|+.+.+. .+ .+... .+..+++|+.|.+.++. +++ ...+++|+.|++.++..+..+ .+
T Consensus 104 --~l~~L~~L~L~---~N--~l~~l----~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~ 166 (457)
T 3bz5_A 104 --PLTKLTYLNCD---TN--KLTKL----DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DV 166 (457)
T ss_dssp --TCTTCCEEECC---SS--CCSCC----CCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CC
T ss_pred --CCCcCCEEECC---CC--cCCee----cCCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---cc
Confidence 45566655541 11 01111 13444456666665543 221 233555666666555433333 24
Q ss_pred cCccCCcEEEeecC
Q 039808 159 RSINGLKFCIISEC 172 (358)
Q Consensus 159 ~~l~~L~~L~l~~~ 172 (358)
+.+++|++|++++|
T Consensus 167 ~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 167 TPQTQLTTLDCSFN 180 (457)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCCcCCEEECCCC
Confidence 45555555555554
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=6.9e-15 Score=140.49 Aligned_cols=265 Identities=15% Similarity=0.082 Sum_probs=151.0
Q ss_pred cccceeccCCCCccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808 4 SCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN 83 (358)
Q Consensus 4 l~~L~~l~L~~~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~ 83 (358)
+.+|++|+++...+..--++.+++|++|++++ +.+.. . .++++++|++|++..+.++.++ ++ .
T Consensus 63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~-N~l~~-------~--~~~~l~~L~~L~L~~N~l~~l~--~~-----~ 125 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDS-NKLTN-------L--DVTPLTKLTYLNCDTNKLTKLD--VS-----Q 125 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCSEEECCS-SCCSC-------C--CCTTCTTCCEEECCSSCCSCCC--CT-----T
T ss_pred cCCCCEEEccCCcCCeEccccCCCCCEEECcC-CCCce-------e--ecCCCCcCCEEECCCCcCCeec--CC-----C
Confidence 56677777776322211156777777777776 33321 1 2667777777777666655543 12 4
Q ss_pred ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccC
Q 039808 84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSING 163 (358)
Q Consensus 84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 163 (358)
+++|+.+.+ ..+ .+... .+..++.|+.|.+.++..+.......+++|+.|++.++ .+..++ ++.+++
T Consensus 126 l~~L~~L~l---~~N--~l~~l----~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~ 192 (457)
T 3bz5_A 126 NPLLTYLNC---ARN--TLTEI----DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD---VSQNKL 192 (457)
T ss_dssp CTTCCEEEC---TTS--CCSCC----CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC---CTTCTT
T ss_pred CCcCCEEEC---CCC--cccee----ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec---cccCCC
Confidence 556665554 111 01111 23445566777776653222212334667777777776 555543 666777
Q ss_pred CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCC
Q 039808 164 LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMS 243 (358)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~ 243 (358)
|+.|++++|. +..+ ....+++|++|+++++. ++.+ + .+.+++|++|+++++ .++.+++ +.++
T Consensus 193 L~~L~l~~N~-l~~~------~l~~l~~L~~L~Ls~N~-l~~i---p--~~~l~~L~~L~l~~N-~l~~~~~----~~l~ 254 (457)
T 3bz5_A 193 LNRLNCDTNN-ITKL------DLNQNIQLTFLDCSSNK-LTEI---D--VTPLTQLTYFDCSVN-PLTELDV----STLS 254 (457)
T ss_dssp CCEEECCSSC-CSCC------CCTTCTTCSEEECCSSC-CSCC---C--CTTCTTCSEEECCSS-CCSCCCC----TTCT
T ss_pred CCEEECcCCc-CCee------ccccCCCCCEEECcCCc-cccc---C--ccccCCCCEEEeeCC-cCCCcCH----HHCC
Confidence 7777777663 2222 14456777777777653 3333 1 445677777777776 3444321 3344
Q ss_pred CccEE----------EEecCCccccccccccccccccccCCCcceeccccccccccccCC----------CCCCccEEee
Q 039808 244 NLEDL----------TVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----------AWPSLEYVSF 303 (358)
Q Consensus 244 ~L~~L----------~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----------~~~~L~~L~i 303 (358)
+|+.| ++++|..++.++ .+.+++|+.|++++|..++.++.. .+++|++|++
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ---------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE---------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc---------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 44444 333443333333 567789999999988776666542 4567777777
Q ss_pred eCCcCCCccCCCCCCCCCeeEEEec
Q 039808 304 YDCPRLKNIGLGSNLKHSVMEIKAE 328 (358)
Q Consensus 304 ~~C~~L~~lP~~~~~~~~L~~~~~~ 328 (358)
+++ +++.+| +..+++|+.+...
T Consensus 326 ~~N-~l~~l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 326 NNT-ELTELD--VSHNTKLKSLSCV 347 (457)
T ss_dssp TTC-CCSCCC--CTTCTTCSEEECC
T ss_pred CCC-cccccc--cccCCcCcEEECC
Confidence 765 366664 5567788887653
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=1.1e-14 Score=145.78 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=90.3
Q ss_pred ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccc-----cc-cccC
Q 039808 139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHI-----CE-GSVP 212 (358)
Q Consensus 139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~ 212 (358)
|+.|++.++ .+..+....++.+++|++|++++|......+.. ...+++|+.|.+.++.....+ +. ....
T Consensus 250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS----LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTT----TTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhh----hcCCCCccEEeccchhhhcccccccccccChhh
Confidence 555555555 344433334555555666655555322221111 344556666666543211111 00 0112
Q ss_pred CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCC-ccccccccccccccccccCCCcceecccccccccccc
Q 039808 213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP-AIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW 291 (358)
Q Consensus 213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~-~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 291 (358)
.+.+++|++|++.++. +..+.+ ..+..+++|+.|++++|. .+..++.. .......++|+.|+++++ .++.+.
T Consensus 325 ~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~----~f~~~~~~~L~~L~L~~n-~l~~~~ 397 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNE----TFVSLAHSPLHILNLTKN-KISKIE 397 (680)
T ss_dssp TTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTT----TTGGGTTSCCCEEECTTS-CCCEEC
T ss_pred cccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchh----hhcccccCcCceEECCCC-CCCeEC
Confidence 3455667777776653 343322 345667777777776653 12222200 001112257788888766 455554
Q ss_pred CC---CCCCccEEeeeCCcCCCccC-CCCCCCCCeeEEEe
Q 039808 292 SS---AWPSLEYVSFYDCPRLKNIG-LGSNLKHSVMEIKA 327 (358)
Q Consensus 292 ~~---~~~~L~~L~i~~C~~L~~lP-~~~~~~~~L~~~~~ 327 (358)
.. .+++|+.|++++|.--..+| .....+++|+.+..
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 43 68889999998886444565 34456677777754
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=6.1e-15 Score=134.91 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=155.8
Q ss_pred CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808 3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL-ELFLQR 78 (358)
Q Consensus 3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~ 78 (358)
+.++++.++++. +.+|..+ .++|++|++++ +.+... .+..+.++++|++|++..+.+..+ +..++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 99 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQN-NDISEL------RKDDFKGLQHLYALVLVNNKISKIHEKAFS- 99 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCC---CTTCCEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECGGGST-
T ss_pred CcccCCEEECCCCCccccCCCC---CCCCeEEECCC-CcCCcc------CHhHhhCCCCCcEEECCCCccCccCHhHhh-
Confidence 446788898886 5678765 36899999998 333211 134689999999999977776654 22222
Q ss_pred hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCc--cC
Q 039808 79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINS--LS 154 (358)
Q Consensus 79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--l~ 154 (358)
.+++|+.+.+. .+ .+..+|. .+. ..|+.|.+.++. .++......+++|+.|++.++ .+.. ..
T Consensus 100 ----~l~~L~~L~L~---~n--~l~~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 165 (332)
T 2ft3_A 100 ----PLRKLQKLYIS---KN--HLVEIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFE 165 (332)
T ss_dssp ----TCTTCCEEECC---SS--CCCSCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSC
T ss_pred ----CcCCCCEEECC---CC--cCCccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCC
Confidence 45666666651 11 1123332 111 366777776653 344444455677777777766 4432 22
Q ss_pred cccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccC
Q 039808 155 DFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF 234 (358)
Q Consensus 155 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 234 (358)
...+..+ +|++|++++|. +..++.. .+++|++|+++++.- +.+. +...+.+++|++|+++++ .++.+.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~-l~~l~~~------~~~~L~~L~l~~n~i-~~~~--~~~l~~l~~L~~L~L~~N-~l~~~~ 233 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAK-LTGIPKD------LPETLNELHLDHNKI-QAIE--LEDLLRYSKLYRLGLGHN-QIRMIE 233 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSB-CSSCCSS------SCSSCSCCBCCSSCC-CCCC--TTSSTTCTTCSCCBCCSS-CCCCCC
T ss_pred cccccCC-ccCEEECcCCC-CCccCcc------ccCCCCEEECCCCcC-CccC--HHHhcCCCCCCEEECCCC-cCCcCC
Confidence 2234555 67777776663 2223221 235777777766532 2221 122345667777777765 344443
Q ss_pred chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---------CCCCccEEeeeC
Q 039808 235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---------AWPSLEYVSFYD 305 (358)
Q Consensus 235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---------~~~~L~~L~i~~ 305 (358)
+ ..+..+++|+.|+++++ .+..++ ..+..+++|+.|+++++ .++.++.. ..++|+.+++.+
T Consensus 234 ~-~~~~~l~~L~~L~L~~N-~l~~lp-------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 234 N-GSLSFLPTLRELHLDNN-KLSRVP-------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp T-TGGGGCTTCCEEECCSS-CCCBCC-------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred h-hHhhCCCCCCEEECCCC-cCeecC-------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence 3 23466777777777765 444554 34566777777777655 46655543 145677777777
Q ss_pred CcCC--CccCCCCCCCCCeeEE
Q 039808 306 CPRL--KNIGLGSNLKHSVMEI 325 (358)
Q Consensus 306 C~~L--~~lP~~~~~~~~L~~~ 325 (358)
++.. ...|.....+++|+.+
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTE
T ss_pred CcccccccCcccccccchhhhh
Confidence 7632 1223333444555444
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=1.1e-14 Score=139.07 Aligned_cols=230 Identities=17% Similarity=0.169 Sum_probs=146.1
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV 94 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~ 94 (358)
..+|.++ ..+|++|++++ +.+... .+..+.++++|++|++..+.+..++.
T Consensus 67 ~~iP~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~-------------------- 116 (452)
T 3zyi_A 67 SEVPQGI---PSNTRYLNLME-NNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEV-------------------- 116 (452)
T ss_dssp SSCCSCC---CTTCSEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred CccCCCC---CCCccEEECcC-CcCceE------CHHHcCCCCCCCEEECCCCccCCcCh--------------------
Confidence 4567654 35788888887 333211 13467888888888886665544321
Q ss_pred eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
..+..+.+|+.|.+.++. .++......+++|+.|++.++ .+..++...+.++++|++|++++|
T Consensus 117 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 117 --------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC
T ss_pred --------------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCC
Confidence 122333456666665543 344444455777788888777 666666556777888888888877
Q ss_pred CCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808 173 PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED 252 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~ 252 (358)
..+..++... ...+++|++|+++++. ++.++ ....+++|++|+++++. ++.+.+ ..+..+++|+.|++++
T Consensus 182 ~~l~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 182 KKLEYISEGA---FEGLFNLKYLNLGMCN-IKDMP----NLTPLVGLEELEMSGNH-FPEIRP-GSFHGLSSLKKLWVMN 251 (452)
T ss_dssp TTCCEECTTT---TTTCTTCCEEECTTSC-CSSCC----CCTTCTTCCEEECTTSC-CSEECG-GGGTTCTTCCEEECTT
T ss_pred CCccccChhh---ccCCCCCCEEECCCCc-ccccc----cccccccccEEECcCCc-CcccCc-ccccCccCCCEEEeCC
Confidence 7777665432 4566778888887753 33331 24467788888887763 454433 3456778888888877
Q ss_pred CCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
+. +..+. ...+..+++|+.|+++++ .++.++.. .+++|+.|+++++|
T Consensus 252 n~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 252 SQ-VSLIE------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SC-CCEEC------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred Cc-CceEC------HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 63 33332 134566778888888766 67767665 57788888887754
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=4.6e-15 Score=148.65 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=44.2
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc--ccccccccccCCCcceecccccccccccc
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE--GEIIDSGCTALPRLKKLTLHYLPGLVTIW 291 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~--~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 291 (358)
+.+++|++|++.++. +....+ ..+..+++|+.|+++++.....+... .......+..+++|+.|+++++ .++.++
T Consensus 269 ~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~ 345 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNN-IQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIK 345 (680)
T ss_dssp TTCTTCCEEECCSCC-BSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCC
T ss_pred cCcccccEeeCCCCc-cCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCC
Confidence 344555555555542 333222 23345555555555543211110000 0001123455666777777655 344444
Q ss_pred CC---CCCCccEEeeeCCc-CCCccC
Q 039808 292 SS---AWPSLEYVSFYDCP-RLKNIG 313 (358)
Q Consensus 292 ~~---~~~~L~~L~i~~C~-~L~~lP 313 (358)
.. .+++|++|++++|. .+..+|
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred hhHhccccCCcEEECCCCchhhhhcc
Confidence 33 56777777777664 234444
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=6.6e-15 Score=151.14 Aligned_cols=292 Identities=16% Similarity=0.118 Sum_probs=180.5
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchh-hhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSV-VLEVCNLTELSSLCFHFPEIKLL-ELFLQR 78 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~ 78 (358)
..+++.|+|+. +.+++..++++.+|++|+++++... ..+ +..+.+|++|++|+++.+.+..+ |..++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~- 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ- 94 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-------cccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-
Confidence 46788888887 3344555788899999999873211 122 45688888888888877766554 32222
Q ss_pred hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh-HHHHhhccCccEEEeccCCCCCccCc
Q 039808 79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP-DAVLQILACCTAFYLDNHLHINSLSD 155 (358)
Q Consensus 79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~ 155 (358)
.+++|+.|.+. .+ ......+....+..+++|+.|++.++. +.. ......+++|+.|++.++ .+..+..
T Consensus 95 ----~l~~L~~L~Ls---~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~ 165 (844)
T 3j0a_A 95 ----GLFHLFELRLY---FC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCE 165 (844)
T ss_dssp ----SCSSCCCEECT---TC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCS
T ss_pred ----CCcccCEeeCc---CC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCH
Confidence 45666666651 11 011122332346667788888887764 322 234566888888888887 5544433
Q ss_pred ccccCc--cCCcEEEeecCCCceEecCCCCccccCCC------ccceeeccccccccccc--------------------
Q 039808 156 FGVRSI--NGLKFCIISECPKIETVVDGKELTTVIFP------SLENLSIHHLWNLTHIC-------------------- 207 (358)
Q Consensus 156 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~~l~~~~-------------------- 207 (358)
..++.+ ++|+.|++++|......+.. ...++ +|++|+++++.-...+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVD----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCC----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred HHcccccCCccceEECCCCccccccccc----hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 345555 67888888776543322211 11111 37777776652111000
Q ss_pred ---------------ccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808 208 ---------------EGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA 272 (358)
Q Consensus 208 ---------------~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 272 (358)
.........++|+.|+++++. +..+.+ ..++.+++|+.|+++++. +..+. ...+..
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~------~~~~~~ 312 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNK-INKIA------DEAFYG 312 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCC-CCEEC------TTTTTT
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCc-CCCCC------hHHhcC
Confidence 000000113689999998874 554433 356789999999999874 44332 135778
Q ss_pred CCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 273 LPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 273 l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
+++|+.|+++++ .++.+... .+++|+.|++++| .+..+|.. ...+++|+.+..
T Consensus 313 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEEC
Confidence 999999999877 56666444 8999999999998 57777654 556778887754
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=134.41 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=165.5
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV 94 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~ 94 (358)
+.+|.++ ..+|++|++++ +.+... ....+.++++|++|++..+.+..++.
T Consensus 44 ~~iP~~~---~~~L~~L~l~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------- 93 (353)
T 2z80_A 44 NSIPSGL---TEAVKSLDLSN-NRITYI------SNSDLQRCVNLQALVLTSNGINTIEE-------------------- 93 (353)
T ss_dssp SSCCTTC---CTTCCEEECTT-SCCCEE------CTTTTTTCTTCCEEECTTSCCCEECT--------------------
T ss_pred ccccccc---cccCcEEECCC-CcCccc------CHHHhccCCCCCEEECCCCccCccCH--------------------
Confidence 4567654 34789998887 333211 12357888888888885555443321
Q ss_pred eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeec
Q 039808 95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISE 171 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~ 171 (358)
..+..+.+|+.|++.++. .++......+++|+.|++.++ .+..++. ..+.++++|++|++++
T Consensus 94 --------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 94 --------------DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred --------------hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCC
Confidence 123334477788877663 566665677899999999988 7777765 3578899999999999
Q ss_pred CCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808 172 CPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE 251 (358)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~ 251 (358)
|..+..++... ...+++|++|+++++.-.... +...+.+++|++|++.++. ++.+ +...+..+++|+.|+++
T Consensus 159 n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 159 MDTFTKIQRKD---FAGLTFLEELEIDASDLQSYE---PKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELR 230 (353)
T ss_dssp SSSCCEECTTT---TTTCCEEEEEEEEETTCCEEC---TTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEE
T ss_pred CccccccCHHH---ccCCCCCCEEECCCCCcCccC---HHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECC
Confidence 87666664332 566889999999887533221 2335678899999999875 4544 33455678999999999
Q ss_pred cCCccccccccccccccccccCCCcceecccccc----ccccccCC--CCCCccEEeeeCCcCCCccCCCC-CCCCCeeE
Q 039808 252 DCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP----GLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVME 324 (358)
Q Consensus 252 ~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~----~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~ 324 (358)
++. +..++...- ......+.++.+++.++. .+..++.. .+++|++|++++| +++.+|... ..+++|+.
T Consensus 231 ~n~-l~~~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 231 DTD-LDTFHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp SCB-CTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCc-ccccccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence 873 333221000 011233455555554431 12233333 6888888888887 578888875 67788888
Q ss_pred EEe
Q 039808 325 IKA 327 (358)
Q Consensus 325 ~~~ 327 (358)
++-
T Consensus 306 L~L 308 (353)
T 2z80_A 306 IWL 308 (353)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=5.2e-14 Score=128.56 Aligned_cols=257 Identities=15% Similarity=0.145 Sum_probs=176.1
Q ss_pred CccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhhccccccccceEEEEEeCccccccc
Q 039808 25 LHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRIVVGHDIKNIVS 103 (358)
Q Consensus 25 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~ 103 (358)
..+|+++++++ ..+..+ +..+ .++|++|++..+.++.++. .++ .+++|+.+.+. .+ .+.
T Consensus 30 ~c~l~~l~~~~-~~l~~l-------p~~~--~~~l~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~---~n--~l~ 89 (330)
T 1xku_A 30 QCHLRVVQCSD-LGLEKV-------PKDL--PPDTALLDLQNNKITEIKDGDFK-----NLKNLHTLILI---NN--KIS 89 (330)
T ss_dssp EEETTEEECTT-SCCCSC-------CCSC--CTTCCEEECCSSCCCCBCTTTTT-----TCTTCCEEECC---SS--CCC
T ss_pred cCCCeEEEecC-CCcccc-------CccC--CCCCeEEECCCCcCCEeChhhhc-----cCCCCCEEECC---CC--cCC
Confidence 34789999887 333322 2222 2689999998777776543 122 56778877762 11 012
Q ss_pred cC-CcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE-ec
Q 039808 104 RV-PDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET-VV 179 (358)
Q Consensus 104 ~~-~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~-~~ 179 (358)
.. | ..+..+++|+.|.+.++. .++.. ..++|+.|++.++ .+..+....+.++++|++|++++|..... +.
T Consensus 90 ~~~~--~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 90 KISP--GAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CBCT--TTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred eeCH--HHhcCCCCCCEEECCCCcCCccChh---hcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 22 2 256677789999998764 33332 2478999999998 77777655688999999999998854321 11
Q ss_pred CCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccc
Q 039808 180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEI 259 (358)
Q Consensus 180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i 259 (358)
. .....+++|++|.++++. ++.++ ...+++|++|+++++. ++.+.+ ..+..+++|+.|+++++. +..+
T Consensus 164 ~---~~~~~l~~L~~L~l~~n~-l~~l~-----~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~ 231 (330)
T 1xku_A 164 N---GAFQGMKKLSYIRIADTN-ITTIP-----QGLPPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAV 231 (330)
T ss_dssp T---TGGGGCTTCCEEECCSSC-CCSCC-----SSCCTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEE
T ss_pred h---hhccCCCCcCEEECCCCc-cccCC-----ccccccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCc-Ccee
Confidence 1 125678999999998864 33332 2235899999999874 665544 356789999999999874 4443
Q ss_pred cccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC-------CCCCeeEEEe
Q 039808 260 ISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN-------LKHSVMEIKA 327 (358)
Q Consensus 260 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~-------~~~~L~~~~~ 327 (358)
+. ..+..+++|+.|+++++ .++.++.. .+++|++|++++|+ ++.+|...- ..+++..+.-
T Consensus 232 ~~------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 232 DN------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp CT------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred Ch------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEe
Confidence 31 24678899999999887 68888776 89999999999984 888875532 1355666654
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=2.5e-14 Score=136.53 Aligned_cols=222 Identities=18% Similarity=0.208 Sum_probs=129.7
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV 80 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~ 80 (358)
..++++|+|+. ..++++.++++.+|++|++++ +.+... .+..+.++++|++|++..+.+..++..
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 141 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQI------EVGAFNGLASLNTLELFDNWLTVIPSG----- 141 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCSBCCTT-----
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCc------ChhhccCcccCCEEECCCCcCCccChh-----
Confidence 35789999988 446666789999999999998 444321 235688999999999977777655421
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV 158 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l 158 (358)
.+..+.+|+.|.+.++. .++...+..+++|+.|++.++..+..++...+
T Consensus 142 -----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 142 -----------------------------AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp -----------------------------TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred -----------------------------hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 12222344445444432 22333344466666666666556666655456
Q ss_pred cCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808 159 RSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM 238 (358)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 238 (358)
.++++|++|++++|. +..++ . ...+++|++|+++++.- ..+. +..++.+++|++|++.++ ++..+.+ ..
T Consensus 193 ~~l~~L~~L~L~~n~-l~~~~-~----~~~l~~L~~L~Ls~N~l-~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~ 261 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCN-IKDMP-N----LTPLVGLEELEMSGNHF-PEIR--PGSFHGLSSLKKLWVMNS-QVSLIER-NA 261 (452)
T ss_dssp TTCTTCCEEECTTSC-CSSCC-C----CTTCTTCCEEECTTSCC-SEEC--GGGGTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred cCCCCCCEEECCCCc-ccccc-c----ccccccccEEECcCCcC-cccC--cccccCccCCCEEEeCCC-cCceECH-HH
Confidence 666677777776653 33221 1 34556677776666532 2211 122345666777777665 3444333 23
Q ss_pred hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808 239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL 284 (358)
Q Consensus 239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c 284 (358)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++
T Consensus 262 ~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 262 FDGLASLVELNLAHN-NLSSLPH------DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT------TSSTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCC-cCCccCh------HHhccccCCCEEEccCC
Confidence 456677777777665 3444331 12445666777776654
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=2.8e-14 Score=128.91 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=145.7
Q ss_pred eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhh-hhcCCCCCceEEEEccCchhH---HHHHhhhc
Q 039808 8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVL-EVCNLTELSSLCFHFPEIKLL---ELFLQRCV 80 (358)
Q Consensus 8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~~~~~~l~~l---~~~~~~~~ 80 (358)
+.++.+. +.+|.++ ..+|++|++++ +.+. .++. .+.++++|++|++..+.+... +..+.
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~-n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--- 75 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELES-NKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--- 75 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCS-SCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH---
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCC-CccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccc---
Confidence 4455554 4567754 36899999988 3332 2332 367889999999876665432 11111
Q ss_pred cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc-cc
Q 039808 81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-FG 157 (358)
Q Consensus 81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~ 157 (358)
.+++| +.|.+.++. .++.. ...+++|+.|++.++ .+..++. ..
T Consensus 76 --~~~~L------------------------------~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~ 121 (306)
T 2z66_A 76 --GTTSL------------------------------KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS-NLKQMSEFSV 121 (306)
T ss_dssp --SCSCC------------------------------CEEECCSCSEEEEEEE-EETCTTCCEEECTTS-EEESSTTTTT
T ss_pred --ccccc------------------------------CEEECCCCccccChhh-cCCCCCCCEEECCCC-cccccccchh
Confidence 23334 444443332 11111 223677777777776 5555543 24
Q ss_pred ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808 158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF 237 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 237 (358)
+..+++|++|++++|... ..... ....+++|++|.++++.-.... .+...+.+++|++|++++| .++.+.+ .
T Consensus 122 ~~~l~~L~~L~l~~n~l~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~ 193 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTR-VAFNG---IFNGLSSLEVLKMAGNSFQENF--LPDIFTELRNLTFLDLSQC-QLEQLSP-T 193 (306)
T ss_dssp TTTCTTCCEEECTTSCCE-ECSTT---TTTTCTTCCEEECTTCEEGGGE--ECSCCTTCTTCCEEECTTS-CCCEECT-T
T ss_pred hhhccCCCEEECCCCcCC-ccchh---hcccCcCCCEEECCCCcccccc--chhHHhhCcCCCEEECCCC-CcCCcCH-H
Confidence 778888999998887533 22222 1456788888888876543311 1233456789999999887 4555544 3
Q ss_pred hhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC-CCccEEeeeCCc
Q 039808 238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCP 307 (358)
Q Consensus 238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~ 307 (358)
.+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ .++..... .+ ++|++|++++++
T Consensus 194 ~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNN-FFSLDT------FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTTCTTCCEEECTTSC-CSBCCS------GGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred HhcCCCCCCEEECCCCc-cCccCh------hhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 45788999999998874 433331 24567889999999877 45554443 55 489999999875
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=134.91 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=48.0
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE 73 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~ 73 (358)
..++++|+|+. ..++...++++.+|++|++++ +.+... ....+.++++|++|++..+.++.++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i------~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTI------EIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEE------CGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCcc------ChhhccCCccCCEEECCCCcCCeeC
Confidence 35788999987 446766789999999999998 444322 1356889999999999877776654
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=6.7e-15 Score=133.86 Aligned_cols=269 Identities=12% Similarity=0.050 Sum_probs=162.3
Q ss_pred ceeccCCCCcc---CCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808 7 VEYVKMPPQLI---SSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN 83 (358)
Q Consensus 7 L~~l~L~~~~i---p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~ 83 (358)
++..+++...+ +..++..+++|++|++++ +.+.. ..+..+.++++|++|++..+.+...+. +. .
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-----~ 78 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQ------ISAADLAPFTKLELLNLSSNVLYETLD-LE-----S 78 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTT-SCCCC------CCHHHHTTCTTCCEEECTTSCCEEEEE-ET-----T
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcC-CccCc------CCHHHhhCCCcCCEEECCCCcCCcchh-hh-----h
Confidence 45555555333 334455566788888877 33321 123457777888888876665543321 12 4
Q ss_pred ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccC
Q 039808 84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSING 163 (358)
Q Consensus 84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 163 (358)
+++|+.+.+. .+ .+ ..+.....++.|.+.++.- .......+++|+.|++.++ .+..+....++.+++
T Consensus 79 l~~L~~L~Ls---~n--~l------~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~ 145 (317)
T 3o53_A 79 LSTLRTLDLN---NN--YV------QELLVGPSIETLHAANNNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSR 145 (317)
T ss_dssp CTTCCEEECC---SS--EE------EEEEECTTCCEEECCSSCC-SEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSS
T ss_pred cCCCCEEECc---CC--cc------ccccCCCCcCEEECCCCcc-CCcCccccCCCCEEECCCC-CCCCccchhhhccCC
Confidence 5566666541 11 01 1222234777777766531 1111123678888888888 676666556788889
Q ss_pred CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCC
Q 039808 164 LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMS 243 (358)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~ 243 (358)
|++|++++|......+... ...+++|++|+++++. ++.+. ....+++|++|+++++ +++.+++. +..++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~ 214 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNF-IYDVK----GQVVFAKLKTLDLSSN-KLAFMGPE--FQSAA 214 (317)
T ss_dssp EEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSC-CCEEE----CCCCCTTCCEEECCSS-CCCEECGG--GGGGT
T ss_pred CCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCc-Ccccc----cccccccCCEEECCCC-cCCcchhh--hcccC
Confidence 9999998875443322220 1356888888888864 33331 1224788899988886 45655332 56788
Q ss_pred CccEEEEecCCccccccccccccccccccCCCcceecccccccc-ccccCC--CCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808 244 NLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKH 320 (358)
Q Consensus 244 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~ 320 (358)
+|+.|+++++ .+..++ ..+..+++|+.|++++++-. ..++.. .+++|+.+++.+++.++..+......+
T Consensus 215 ~L~~L~L~~N-~l~~l~-------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~ 286 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIE-------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (317)
T ss_dssp TCSEEECTTS-CCCEEC-------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred cccEEECcCC-cccchh-------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence 8899988886 555555 34667888888888877433 122222 778888888887777766654444333
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=1.9e-13 Score=124.92 Aligned_cols=257 Identities=17% Similarity=0.137 Sum_probs=172.6
Q ss_pred ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhhccccccccceEEEEEeCcccccccc
Q 039808 26 HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRIVVGHDIKNIVSR 104 (358)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~ 104 (358)
-+|+++++++ ..+. .++..+ .++|++|++..+.+..++. .+. .+++|+.+.+. .+ .+..
T Consensus 33 c~l~~l~~~~-~~l~-------~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~---~n--~l~~ 92 (332)
T 2ft3_A 33 CHLRVVQCSD-LGLK-------AVPKEI--SPDTTLLDLQNNDISELRKDDFK-----GLQHLYALVLV---NN--KISK 92 (332)
T ss_dssp EETTEEECCS-SCCS-------SCCSCC--CTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECC---SS--CCCE
T ss_pred ccCCEEECCC-CCcc-------ccCCCC--CCCCeEEECCCCcCCccCHhHhh-----CCCCCcEEECC---CC--ccCc
Confidence 3799999988 3333 223333 3689999998777766532 222 56777777762 11 0122
Q ss_pred CCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE-ecCC
Q 039808 105 VPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET-VVDG 181 (358)
Q Consensus 105 ~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~-~~~~ 181 (358)
.+ ...+..+.+|+.|.+.++. .++..+ .++|+.|++.++ .+..++...+.++++|++|++++|..... ....
T Consensus 93 ~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 93 IH-EKAFSPLRKLQKLYISKNHLVEIPPNL---PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp EC-GGGSTTCTTCCEEECCSSCCCSCCSSC---CTTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred cC-HhHhhCcCCCCEEECCCCcCCccCccc---cccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 11 1356667789999998764 344332 378999999998 77777665688999999999998854321 1111
Q ss_pred CCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccc
Q 039808 182 KELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS 261 (358)
Q Consensus 182 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~ 261 (358)
....+ +|++|+++++. ++.++ ...+++|++|+++++ .++.+.+ ..+..+++|+.|+++++ .+..++.
T Consensus 168 ---~~~~l-~L~~L~l~~n~-l~~l~-----~~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~ 234 (332)
T 2ft3_A 168 ---AFDGL-KLNYLRISEAK-LTGIP-----KDLPETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHN-QIRMIEN 234 (332)
T ss_dssp ---SSCSC-CCSCCBCCSSB-CSSCC-----SSSCSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSS-CCCCCCT
T ss_pred ---cccCC-ccCEEECcCCC-CCccC-----ccccCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC-cCCcCCh
Confidence 12333 89999998864 34432 223479999999987 4555433 34678999999999987 4444331
Q ss_pred cccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC-C------CCCeeEEEec
Q 039808 262 EGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN-L------KHSVMEIKAE 328 (358)
Q Consensus 262 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~-~------~~~L~~~~~~ 328 (358)
..+..+++|+.|+++++ .++.+|.. .+++|++|+++++ .++.+|...- . .++|+.+.-.
T Consensus 235 ------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 235 ------GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ------TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ------hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 24678899999999877 78888877 8999999999997 4888875431 1 3456666543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=5.3e-14 Score=129.78 Aligned_cols=246 Identities=13% Similarity=0.075 Sum_probs=151.6
Q ss_pred cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhh
Q 039808 4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRC 79 (358)
Q Consensus 4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~ 79 (358)
..+|++|+++. +.+|.+.++++++|++|++++ +.+... .+..+.++++|++|++..+.++.++.. ++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 121 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTI------EEDSFSSLGSLEHLDLSYNYLSNLSSSWFK-- 121 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCSSCCHHHHT--
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCcc------CHhhcCCCCCCCEEECCCCcCCcCCHhHhC--
Confidence 35789999988 457776789999999999998 344321 134688999999999988877766542 22
Q ss_pred ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChH-HHHhhccCccEEEeccCCCCCccCcc
Q 039808 80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPD-AVLQILACCTAFYLDNHLHINSLSDF 156 (358)
Q Consensus 80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~ 156 (358)
.+++|+. |.+.++. .++. .....+++|+.|++.++..+..+...
T Consensus 122 ---~l~~L~~------------------------------L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 122 ---PLSSLTF------------------------------LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp ---TCTTCSE------------------------------EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred ---CCccCCE------------------------------EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 2344444 4443331 2222 22344667777777776445555444
Q ss_pred cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808 157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS 236 (358)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 236 (358)
.++++++|++|++++|......+.. ...+++|++|+++++. ++.++.. ..+.+++|++|+++++. ++...+.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKS----LKSIQNVSHLILHMKQ-HILLLEI--FVDVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTT----TTTCSEEEEEEEECSC-STTHHHH--HHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred HccCCCCCCEEECCCCCcCccCHHH----HhccccCCeecCCCCc-cccchhh--hhhhcccccEEECCCCc-ccccccc
Confidence 5777778888888777543322222 4566777888777654 2332111 11236778888887763 3332221
Q ss_pred h--hhccCCCccEEEEecCCcc----ccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 237 F--MIHFMSNLEDLTVEDCPAI----EEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 237 ~--~l~~l~~L~~L~i~~c~~l----~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
. .....+.++.+++.++.-- ..++ ..+..+++|+.|+++++ .++.++.. .+++|++|++++++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-------~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVM-------KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHH-------HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccchhhccccccccccCcchhhhH-------HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1 1234566777777765311 1122 23567888888888776 67777765 67888888888875
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=1.7e-13 Score=123.70 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=15.7
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
+++|+.|++.++ .+..++. .+..+++|++|++++|
T Consensus 77 ~~~L~~L~Ls~n-~i~~l~~-~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 77 TTSLKYLDLSFN-GVITMSS-NFLGLEQLEHLDFQHS 111 (306)
T ss_dssp CSCCCEEECCSC-SEEEEEE-EEETCTTCCEEECTTS
T ss_pred ccccCEEECCCC-ccccChh-hcCCCCCCCEEECCCC
Confidence 444555555444 3333332 2444445555555443
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=6.2e-14 Score=125.34 Aligned_cols=215 Identities=17% Similarity=0.175 Sum_probs=100.9
Q ss_pred eccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhhhccccc
Q 039808 9 YVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQRCVAWNA 84 (358)
Q Consensus 9 ~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~~~~ 84 (358)
.++.+. +.+|.++ ..+|++|++++ +.+... ....+.++++|++|++..+.+..+. ..+. .+
T Consensus 15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~-n~i~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l 79 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI---PAASQRIFLHG-NRISHV------PAASFRACRNLTILWLHSNVLARIDAAAFT-----GL 79 (285)
T ss_dssp EEECCSSCCSSCCTTC---CTTCSEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTT-----TC
T ss_pred EEEcCcCCcccCCcCC---CCCceEEEeeC-CcCCcc------CHHHcccCCCCCEEECCCCccceeCHhhcC-----Cc
Confidence 444544 4456543 46788888887 333221 1235778888888888666555442 1111 33
Q ss_pred cccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808 85 QCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN 162 (358)
Q Consensus 85 ~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~ 162 (358)
++|+.+.+. .+ ..+...+ ...+..+.+|+.|.+.++. .++......+++|+.|++.++ .+..++...+++++
T Consensus 80 ~~L~~L~l~---~n-~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 153 (285)
T 1ozn_A 80 ALLEQLDLS---DN-AQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLG 153 (285)
T ss_dssp TTCCEEECC---SC-TTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cCCCEEeCC---CC-CCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCC
Confidence 444444431 11 0001110 0133334455555555442 232333344555666666555 44444433355555
Q ss_pred CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808 163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM 242 (358)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l 242 (358)
+|++|++++| .+..++... ...+++|++|+++++.- ..+. +...+.+++|++|+++++ .++.+++ ..+..+
T Consensus 154 ~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l 224 (285)
T 1ozn_A 154 NLTHLFLHGN-RISSVPERA---FRGLHSLDRLLLHQNRV-AHVH--PHAFRDLGRLMTLYLFAN-NLSALPT-EALAPL 224 (285)
T ss_dssp TCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCC-CEEC--TTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTC
T ss_pred CccEEECCCC-cccccCHHH---hcCccccCEEECCCCcc-cccC--HhHccCcccccEeeCCCC-cCCcCCH-HHcccC
Confidence 6666666555 233332221 33455555555555432 2110 112334455555555554 2333322 234555
Q ss_pred CCccEEEEecC
Q 039808 243 SNLEDLTVEDC 253 (358)
Q Consensus 243 ~~L~~L~i~~c 253 (358)
++|+.|+++++
T Consensus 225 ~~L~~L~l~~N 235 (285)
T 1ozn_A 225 RALQYLRLNDN 235 (285)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEeccCC
Confidence 55555555544
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=1.2e-13 Score=125.64 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=23.1
Q ss_pred hhcCCCCCceEEEEccCchhHH-HHHhhhccccccccceEEE
Q 039808 52 EVCNLTELSSLCFHFPEIKLLE-LFLQRCVAWNAQCLTEFRI 92 (358)
Q Consensus 52 ~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~~~~~~L~~l~i 92 (358)
....+++|++|++..+.+..++ ..+. .+++|+.+.+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L 65 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLA-----PFTKLELLNL 65 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHT-----TCTTCCEEEC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhh-----CCCcCCEEEC
Confidence 3567789999999777776554 2233 4555555554
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=2e-13 Score=123.85 Aligned_cols=194 Identities=11% Similarity=0.011 Sum_probs=134.5
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCC-ccCcccccCccCCcEEEeecCCCceEecCCCCccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHIN-SLSDFGVRSINGLKFCIISECPKIETVVDGKELTT 186 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 186 (358)
.+..+++|+.|.+.++. +..+.....+++|+.|++.++ .+. .++. .++.+++|++|++++|.....++.. .
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~----l 169 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPP-SISSLPNLVGITFDGNRISGAIPDS----Y 169 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCG-GGGGCTTCCEEECCSSCCEEECCGG----G
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHH----H
Confidence 34455577777776653 122234556899999999998 555 4444 5889999999999998654455443 5
Q ss_pred cCCC-ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccc
Q 039808 187 VIFP-SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEI 265 (358)
Q Consensus 187 ~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~ 265 (358)
..++ +|++|+++++.-...+ +...+.++ |++|+++++. ++...+ ..+..+++|+.|+++++.--..++
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~---~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~----- 238 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKI---PPTFANLN-LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG----- 238 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEEC---CGGGGGCC-CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSEECCBGG-----
T ss_pred hhhhhcCcEEECcCCeeeccC---ChHHhCCc-ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCceeeecC-----
Confidence 5666 9999999887544333 22233444 9999999874 444433 456789999999999875433333
Q ss_pred cccccccCCCcceeccccccccc-cccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808 266 IDSGCTALPRLKKLTLHYLPGLV-TIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI 325 (358)
Q Consensus 266 ~~~~~~~l~~L~~L~l~~c~~L~-~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~ 325 (358)
....+++|+.|+++++ .++ .++.. .+++|++|++++|.--..+|.. ..+++|+.+
T Consensus 239 ---~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 239 ---KVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp ---GCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred ---cccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 3667899999999887 455 55555 7899999999999755577776 455555543
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=1.4e-12 Score=113.49 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=139.5
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. .++......+++|+.|++.++..+..++...+.++++|++|++++|..+..++... ...+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---EECCTTCC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---hCCCCCCC
Confidence 67778877764 44444455688999999998844778876668899999999999855677665432 45678999
Q ss_pred eeecccccccccccccccCCCcCcccc---EEeEecCCCccccCchhhhccCCCcc-EEEEecCCccccccccccccccc
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLR---ILSVHACPKLKFVFSSFMIHFMSNLE-DLTVEDCPAIEEIISEGEIIDSG 269 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~l~~~~~l~~l~~L~-~L~i~~c~~l~~i~~~~~~~~~~ 269 (358)
+|++.++. ++.++. .+.+++|+ +|++++++.++.+++ ..+..+++|+ .|+++++ .+..++ ..
T Consensus 109 ~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~-------~~ 174 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQ-------GY 174 (239)
T ss_dssp EEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEEC-------TT
T ss_pred EEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccC-------Hh
Confidence 99998864 344421 44567777 999999877887644 3467889999 9999876 455555 12
Q ss_pred cccCCCcceeccccccccccccCC---CC-CCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE 328 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~ 328 (358)
....++|+.|+++++..++.++.. .+ ++|+.|+++++ .++.+|.. .+++|+.+...
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence 223378999999888668888765 67 89999999986 58888876 55666666543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.8e-12 Score=127.95 Aligned_cols=246 Identities=15% Similarity=0.085 Sum_probs=140.5
Q ss_pred cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccc
Q 039808 6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAW 82 (358)
Q Consensus 6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~ 82 (358)
+++.++++. +.+|..+. ++|++|++++ +.+.. ++. .+++|++|++..+.++.+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~-N~l~~-------lp~---~l~~L~~L~Ls~N~l~~lp~-------- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPD-NNLTS-------LPA---LPPELRTLEVSGNQLTSLPV-------- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECS-CCCSC-------CCC---CCTTCCEEEECSCCCSCCCC--------
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecC-CCCCC-------CCC---cCCCCCEEEcCCCcCCcCCC--------
Confidence 467788877 45777642 7899999988 34432 222 56888889888777776653
Q ss_pred cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccC
Q 039808 83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRS 160 (358)
Q Consensus 83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~ 160 (358)
.+++|+.+.+. .+ .+..+|. .+.+|+.|.+.++. .++. .+++|+.|++.++ .+..++. .
T Consensus 99 ~l~~L~~L~Ls---~N--~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~----~ 159 (622)
T 3g06_A 99 LPPGLLELSIF---SN--PLTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN-QLASLPA----L 159 (622)
T ss_dssp CCTTCCEEEEC---SC--CCCCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC----C
T ss_pred CCCCCCEEECc---CC--cCCCCCC-----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCC-cCCCcCC----c
Confidence 45677777762 11 1223332 34467777776653 3332 2477888888777 5555542 2
Q ss_pred ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhc
Q 039808 161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIH 240 (358)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~ 240 (358)
+.+|+.|++++|. +..++ ..+++|+.|+++++. ++.++ ..+++|+.|++.+| .++.++ .
T Consensus 160 ~~~L~~L~L~~N~-l~~l~-------~~~~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N-~l~~l~-----~ 218 (622)
T 3g06_A 160 PSELCKLWAYNNQ-LTSLP-------MLPSGLQELSVSDNQ-LASLP------TLPSELYKLWAYNN-RLTSLP-----A 218 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSSCC-----C
T ss_pred cCCCCEEECCCCC-CCCCc-------ccCCCCcEEECCCCC-CCCCC------CccchhhEEECcCC-cccccC-----C
Confidence 4567777776653 33332 235667777666643 33321 12356666666654 333331 1
Q ss_pred cCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808 241 FMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKH 320 (358)
Q Consensus 241 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~ 320 (358)
.+++|+.|+++++ .+..++ ..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|..+..++
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp----------~~l~~L~~L~Ls~N-~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~ 284 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLS 284 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSS-CCCSCCGGGGGSC
T ss_pred CCCCCCEEEccCC-ccCcCC----------CCCCcCcEEECCCC-CCCcCCc-ccccCcEEeCCCC-CCCcCCHHHhhcc
Confidence 2356666666654 333332 34456666666554 4555554 5566666666665 4556666555556
Q ss_pred CeeEEEe
Q 039808 321 SVMEIKA 327 (358)
Q Consensus 321 ~L~~~~~ 327 (358)
+|+.+..
T Consensus 285 ~L~~L~L 291 (622)
T 3g06_A 285 SETTVNL 291 (622)
T ss_dssp TTCEEEC
T ss_pred ccCEEEe
Confidence 6665543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=6.6e-14 Score=137.87 Aligned_cols=256 Identities=12% Similarity=-0.013 Sum_probs=122.4
Q ss_pred hhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC-CC
Q 039808 50 VLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE-NI 128 (358)
Q Consensus 50 ~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 128 (358)
...+.+|++|++|.+..+.+..++..+. .+++|+.+.+.. .. ..+...+....+..+.+++.+.+.+.. ..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~-----~~~~L~~L~l~~--~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 284 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFK-----AAANLEEFCGGS--LN-EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHH-----HCTTCCEEEECB--CC-CCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHh-----hhhHHHhhcccc--cc-cccchHHHHHHhhccccccccCccccchhH
Confidence 3345677778877776666666665544 456677666521 11 000001111233444455556554432 12
Q ss_pred hHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeec----------------------------------CC
Q 039808 129 PDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISE----------------------------------CP 173 (358)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~----------------------------------~~ 173 (358)
...+...+++|+.|++.+|. +..... ..+..+++|++|++.+ |.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 22233445666666666663 322111 0134555555555542 22
Q ss_pred CceEecCCCCccccCCCccceeecccccccccccccccCCC-cCccccEEeEec---CCCccccCc----hhhhccCCCc
Q 039808 174 KIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG-SFARLRILSVHA---CPKLKFVFS----SFMIHFMSNL 245 (358)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~---c~~l~~l~~----~~~l~~l~~L 245 (358)
.+.... . ......+++|++|.+ .|..++.... ...+ .+++|++|++.. |..++..+. ...+..+++|
T Consensus 364 ~~~~~~-~-~~l~~~~~~L~~L~l-~~~~l~~~~~--~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 364 LVSQRG-L-IALAQGCQELEYMAV-YVSDITNESL--ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp CCCHHH-H-HHHHHHCTTCSEEEE-EESCCCHHHH--HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccCHHH-H-HHHHhhCccCeEEEe-ecCCccHHHH--HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 211100 0 000112455555555 2222222100 0011 256677777763 445554211 1234557777
Q ss_pred cEEEEecCCc-cccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcCCCc--cCCCCCC
Q 039808 246 EDLTVEDCPA-IEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKN--IGLGSNL 318 (358)
Q Consensus 246 ~~L~i~~c~~-l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~--lP~~~~~ 318 (358)
+.|+++.|.. +.... ...-...+++|+.|++++|. ++..... ++++|++|++++|+ +.. ++.....
T Consensus 439 ~~L~L~~~~~~l~~~~-----~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLG-----LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CEEEEECCGGGCCHHH-----HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CEEEEecCCCCccHHH-----HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 7777766543 21110 00012347889999987663 5432211 78999999999998 432 3433345
Q ss_pred CCCeeEEE
Q 039808 319 KHSVMEIK 326 (358)
Q Consensus 319 ~~~L~~~~ 326 (358)
+++|+.+.
T Consensus 512 l~~L~~L~ 519 (592)
T 3ogk_B 512 LPSLRYLW 519 (592)
T ss_dssp CSSCCEEE
T ss_pred cCccCeeE
Confidence 66777664
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=1.9e-13 Score=130.46 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=82.7
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCC-------------CceEEEEccC
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTE-------------LSSLCFHFPE 68 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-------------L~~L~~~~~~ 68 (358)
++|+.++++. +.+|+. ++++.+|++|+++++ .+. ...+..++++++ +++|++..+.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n-~~~------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWS-EWE------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHH------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccchhhhcccCchhhCChh-HhcccchhhhhccCC-ccc------ccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 5677787776 567877 489999999988872 111 123444555544 4677776555
Q ss_pred chhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEecc
Q 039808 69 IKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDN 146 (358)
Q Consensus 69 l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~ 146 (358)
++.+|. ..++|+.+.+. .+ .+..+|. .+.+++.|.+.++. +++. ..++++.|++.+
T Consensus 83 l~~lp~--------~~~~L~~L~l~---~n--~l~~lp~-----~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~ 140 (454)
T 1jl5_A 83 LSSLPE--------LPPHLESLVAS---CN--SLTELPE-----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSN 140 (454)
T ss_dssp CSCCCS--------CCTTCSEEECC---SS--CCSSCCC-----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCS
T ss_pred cccCCC--------CcCCCCEEEcc---CC--cCCcccc-----ccCCCcEEECCCCccCcccC----CCCCCCEEECcC
Confidence 555442 23456666541 11 1122332 12466777766553 2211 235777777777
Q ss_pred CCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEec
Q 039808 147 HLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHA 226 (358)
Q Consensus 147 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 226 (358)
+ .+..++ .++++++|++|++++|. +..++. .+++|++|+++++. ++.++ ..+.+++|++|++.+
T Consensus 141 n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~lp~-------~~~~L~~L~L~~n~-l~~l~----~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 141 N-QLEKLP--ELQNSSFLKIIDVDNNS-LKKLPD-------LPPSLEFIAAGNNQ-LEELP----ELQNLPFLTAIYADN 204 (454)
T ss_dssp S-CCSSCC--CCTTCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-CSSCC----CCTTCTTCCEEECCS
T ss_pred C-CCCCCc--ccCCCCCCCEEECCCCc-CcccCC-------CcccccEEECcCCc-CCcCc----cccCCCCCCEEECCC
Confidence 7 555565 36777777777777763 333321 12466666666542 22221 234455555555555
Q ss_pred C
Q 039808 227 C 227 (358)
Q Consensus 227 c 227 (358)
|
T Consensus 205 N 205 (454)
T 1jl5_A 205 N 205 (454)
T ss_dssp S
T ss_pred C
Confidence 4
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=3.3e-12 Score=126.38 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=76.0
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
..+++|+.|++.++.....+.+ ..+..+++|+.|++++| .+..++ ...+..+++|+.|+++++ +++.++..
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~------~~~f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLS------PTAFNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEEC------TTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred ccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcC------hHHHcCCCCCCEEECCCC-cCCCCChh
Confidence 4567788888887765554433 34677889999999887 455543 135778999999999876 78887765
Q ss_pred ---CCCCccEEeeeCCcCCCcc-CCCCCCC-CCeeEEEe
Q 039808 294 ---AWPSLEYVSFYDCPRLKNI-GLGSNLK-HSVMEIKA 327 (358)
Q Consensus 294 ---~~~~L~~L~i~~C~~L~~l-P~~~~~~-~~L~~~~~ 327 (358)
.+++|+.|+++++. ++.+ |..+..+ ++|+.+.-
T Consensus 537 ~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEEC
T ss_pred HHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEe
Confidence 78999999999985 6666 4555665 67888753
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=9.3e-14 Score=127.02 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=136.1
Q ss_pred ceeccCCCCccCCchhhcC--ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh--HHHHHhhhccc
Q 039808 7 VEYVKMPPQLISSGIISRL--HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL--LELFLQRCVAW 82 (358)
Q Consensus 7 L~~l~L~~~~ip~~~i~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~--l~~~~~~~~~~ 82 (358)
++.++++...+.+..++++ .++++|++.+ +.+ ......+.++++|++|++..+.+.. ++..+.
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~-n~l-------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~----- 115 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPR-SFM-------DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS----- 115 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTT-CEE-------CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT-----
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCC-ccc-------cccchhhccCCCCCEEEccCCCcCHHHHHHHHh-----
Confidence 5666777655555566777 7888888876 221 2222335677888888876555432 332222
Q ss_pred cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCC--hHHHHhhccCccEEEeccCCCCCc--cCcccc
Q 039808 83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENI--PDAVLQILACCTAFYLDNHLHINS--LSDFGV 158 (358)
Q Consensus 83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--l~~~~l 158 (358)
.+++|+.|.+.++.-. .......+++|+.|++.+|..+.. ++. .+
T Consensus 116 ------------------------------~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~ 164 (336)
T 2ast_B 116 ------------------------------QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LL 164 (336)
T ss_dssp ------------------------------TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HH
T ss_pred ------------------------------hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HH
Confidence 2235666666555311 112233478888898888855553 333 36
Q ss_pred cCccCCcEEEeecCCCceE--ecCCCCccccCCC-ccceeeccccc-ccccccccccCCCcCccccEEeEecCCCccccC
Q 039808 159 RSINGLKFCIISECPKIET--VVDGKELTTVIFP-SLENLSIHHLW-NLTHICEGSVPNGSFARLRILSVHACPKLKFVF 234 (358)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 234 (358)
.++++|++|++++|..+.. ++.. ...++ +|++|+++++. .+..... +...+.+++|++|++.+|..++...
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~----~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVA----VAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHH----HHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHH----HHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 7788999999988855542 1111 44577 89999998875 3321100 1112457889999998887665443
Q ss_pred chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808 235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL 284 (358)
Q Consensus 235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c 284 (358)
+. .+..+++|+.|++++|..+.... -..+..+++|+.|++++|
T Consensus 240 ~~-~l~~l~~L~~L~l~~~~~~~~~~------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQ-EFFQLNYLQHLSLSRCYDIIPET------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG-GGGGCTTCCEEECTTCTTCCGGG------GGGGGGCTTCCEEECTTS
T ss_pred HH-HHhCCCCCCEeeCCCCCCCCHHH------HHHHhcCCCCCEEeccCc
Confidence 33 45678899999998886443211 013566888999999887
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=3.8e-12 Score=125.59 Aligned_cols=230 Identities=16% Similarity=0.125 Sum_probs=166.6
Q ss_pred ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808 5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA 81 (358)
Q Consensus 5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~ 81 (358)
.+|++|+++. +.+|. .+++|++|++++ +.+.. ++. .+++|++|++..+.+..++.
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~-N~l~~-------lp~---~l~~L~~L~Ls~N~l~~l~~------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSG-NQLTS-------LPV---LPPGLLELSIFSNPLTHLPA------- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECS-CCCSC-------CCC---CCTTCCEEEECSCCCCCCCC-------
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCC-CcCCc-------CCC---CCCCCCEEECcCCcCCCCCC-------
Confidence 5789999988 34565 578999999998 44432 222 78999999998888877653
Q ss_pred ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccccc
Q 039808 82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVR 159 (358)
Q Consensus 82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~ 159 (358)
.+.+|+.+.+. .+ .+..+|. .+++|+.|.+.++. +++. .+.+|+.|++.++ .+..++ .
T Consensus 119 -~l~~L~~L~L~---~N--~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N-~l~~l~----~ 178 (622)
T 3g06_A 119 -LPSGLCKLWIF---GN--QLTSLPV-----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNN-QLTSLP----M 178 (622)
T ss_dssp -CCTTCCEEECC---SS--CCSCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCC----C
T ss_pred -CCCCcCEEECC---CC--CCCcCCC-----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCC-CCCCCc----c
Confidence 45678877762 11 1234443 13588999998874 3332 4678999999988 676665 4
Q ss_pred CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh
Q 039808 160 SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI 239 (358)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l 239 (358)
.+++|+.|++++|. +..++ ..+++|++|.+.++. ++.++ ..+++|++|+++++ .++.++
T Consensus 179 ~~~~L~~L~Ls~N~-l~~l~-------~~~~~L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N-~L~~lp----- 237 (622)
T 3g06_A 179 LPSGLQELSVSDNQ-LASLP-------TLPSELYKLWAYNNR-LTSLP------ALPSGLKELIVSGN-RLTSLP----- 237 (622)
T ss_dssp CCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC-CSSCC------CCCTTCCEEECCSS-CCSCCC-----
T ss_pred cCCCCcEEECCCCC-CCCCC-------CccchhhEEECcCCc-ccccC------CCCCCCCEEEccCC-ccCcCC-----
Confidence 57899999999874 44332 235789999998863 44432 23589999999987 566652
Q ss_pred ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCC
Q 039808 240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRL 309 (358)
Q Consensus 240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L 309 (358)
..+++|+.|+++++ .+..++ . .+++|+.|+++++ .++.+|.. .+++|+.|++++|+--
T Consensus 238 ~~l~~L~~L~Ls~N-~L~~lp---------~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 VLPSELKELMVSGN-RLTSLP---------M-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCTTCCEEECCSS-CCSCCC---------C-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCCcCcEEECCCC-CCCcCC---------c-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 46789999999987 666665 2 6789999999877 78888766 8999999999998743
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=7.1e-12 Score=119.51 Aligned_cols=204 Identities=19% Similarity=0.176 Sum_probs=105.9
Q ss_pred hhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh
Q 039808 52 EVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP 129 (358)
Q Consensus 52 ~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~ 129 (358)
+++++++|++|++..+.++.+|. ...+|+.+.+. .+ .+..+| .+..+..|+.|.+.++. +++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~---~n--~l~~l~---~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAG---NN--QLEELP---ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCC--------CCTTCCEEECC---SS--CCSSCC---CCTTCTTCCEEECCSSCCSSCC
T ss_pred ccCCCCCCCEEECCCCcCcccCC--------CcccccEEECc---CC--cCCcCc---cccCCCCCCEEECCCCcCCcCC
Confidence 46777777777776666655542 23456666551 11 112333 34556677777776653 222
Q ss_pred HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccc
Q 039808 130 DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEG 209 (358)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 209 (358)
. ..++++.|++.++ .+..++. ++.+++|++|++++|. +..+++ .+++|++|+++++. ++.++.
T Consensus 212 ~----~~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~-l~~l~~-------~~~~L~~L~l~~N~-l~~l~~- 274 (454)
T 1jl5_A 212 D----LPLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNL-LKTLPD-------LPPSLEALNVRDNY-LTDLPE- 274 (454)
T ss_dssp C----CCTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSC-CSSCCS-------CCTTCCEEECCSSC-CSCCCC-
T ss_pred C----CcCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCc-CCcccc-------cccccCEEECCCCc-ccccCc-
Confidence 2 2357888888877 6666663 7788888888888763 332321 23566666665543 222211
Q ss_pred ccCCCcCccccEEeEecCCCccccCchh--------------hhccC-CCccEEEEecCCccccccccccccccccccCC
Q 039808 210 SVPNGSFARLRILSVHACPKLKFVFSSF--------------MIHFM-SNLEDLTVEDCPAIEEIISEGEIIDSGCTALP 274 (358)
Q Consensus 210 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~--------------~l~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~ 274 (358)
.+++|++|++++|. ++.++..+ .+..+ ++|+.|+++++ .+..++ ..++
T Consensus 275 -----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp----------~~~~ 337 (454)
T 1jl5_A 275 -----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP----------ALPP 337 (454)
T ss_dssp -----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC----------CCCT
T ss_pred -----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc----------ccCC
Confidence 12455555555442 22210000 00111 24455555443 222222 1245
Q ss_pred CcceeccccccccccccCCCCCCccEEeeeCCc
Q 039808 275 RLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCP 307 (358)
Q Consensus 275 ~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~ 307 (358)
+|+.|+++++ .++.++. .+++|++|++++|+
T Consensus 338 ~L~~L~L~~N-~l~~lp~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 338 RLERLIASFN-HLAEVPE-LPQNLKQLHVEYNP 368 (454)
T ss_dssp TCCEEECCSS-CCSCCCC-CCTTCCEEECCSSC
T ss_pred cCCEEECCCC-ccccccc-hhhhccEEECCCCC
Confidence 6666666555 4555555 56667777776664
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1.8e-12 Score=124.68 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
..|+.|.+.++. +++. ..+++|+.|++.++ .+..+....++++++|++|++++|......+... ...+++|
T Consensus 99 ~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L 171 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC---SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTL 171 (487)
T ss_dssp TTCCEEECCSSCCCCEEE---CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTC
T ss_pred CCcCEEECcCCcCCCCCc---cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcc
Confidence 366666666553 2222 23577888888877 6666554457778888888888875444333221 1256788
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA 272 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 272 (358)
++|+++++. +..+ .....+++|++|+++++ .++.+++. +..+++|+.|+++++ .+..++ ..+..
T Consensus 172 ~~L~Ls~N~-l~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp-------~~l~~ 235 (487)
T 3oja_A 172 EHLNLQYNF-IYDV----KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIE-------KALRF 235 (487)
T ss_dssp CEEECTTSC-CCEE----ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEEC-------TTCCC
T ss_pred cEEecCCCc-cccc----cccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccc-------hhhcc
Confidence 888887764 3332 11234778888888876 45555432 567788888888875 444454 34566
Q ss_pred CCCcceecccccccc-ccccCC--CCCCccEEeee
Q 039808 273 LPRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFY 304 (358)
Q Consensus 273 l~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~ 304 (358)
+++|+.|++++++-. ..++.. .++.|+.+.+.
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 788888888776433 122222 56666666665
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=1.9e-12 Score=124.65 Aligned_cols=228 Identities=12% Similarity=-0.026 Sum_probs=134.0
Q ss_pred ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccC
Q 039808 26 HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRV 105 (358)
Q Consensus 26 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~ 105 (358)
++|++|++++ +.+.. ..+..+.++++|++|++..+.+...+
T Consensus 34 ~~L~~L~Ls~-n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------------------- 74 (487)
T 3oja_A 34 WNVKELDLSG-NPLSQ------ISAADLAPFTKLELLNLSSNVLYETL-------------------------------- 74 (487)
T ss_dssp GGCCEEECCS-SCCCC------CCGGGGTTCTTCCEEECTTSCCEEEE--------------------------------
T ss_pred CCccEEEeeC-CcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCc--------------------------------
Confidence 3788998888 33321 12346788888888888555443221
Q ss_pred CcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC
Q 039808 106 PDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE 183 (358)
Q Consensus 106 ~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 183 (358)
.+..+++|+.|.+.++. +++ ..++|+.|++.++ .+..++ ...+++|++|++++|......+..
T Consensus 75 ----~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~L~~N~l~~~~~~~-- 139 (487)
T 3oja_A 75 ----DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN-NISRVS---CSRGQGKKNIYLANNKITMLRDLD-- 139 (487)
T ss_dssp ----ECTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSS-CCCCEE---ECCCSSCEEEECCSSCCCSGGGBC--
T ss_pred ----ccccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCC-cCCCCC---ccccCCCCEEECCCCCCCCCCchh--
Confidence 01222355556555542 121 1367888888777 555544 235677888888777433222112
Q ss_pred ccccCCCccceeecccccccccccccccCC-CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc
Q 039808 184 LTTVIFPSLENLSIHHLWNLTHICEGSVPN-GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE 262 (358)
Q Consensus 184 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~ 262 (358)
...+++|+.|+++++.-.... +... +.+++|++|++++|. ++.+++ ...+++|+.|+++++ .+..++
T Consensus 140 --~~~l~~L~~L~Ls~N~l~~~~---~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~-- 207 (487)
T 3oja_A 140 --EGCRSRVQYLDLKLNEIDTVN---FAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSN-KLAFMG-- 207 (487)
T ss_dssp --GGGGSSEEEEECTTSCCCEEE---GGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSS-CCCEEC--
T ss_pred --hcCCCCCCEEECCCCCCCCcC---hHHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCC-CCCCCC--
Confidence 445677888888776432222 1112 246778888887764 444411 235778888888776 344444
Q ss_pred ccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCC-CccCCCCCCCCCeeEE
Q 039808 263 GEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRL-KNIGLGSNLKHSVMEI 325 (358)
Q Consensus 263 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L-~~lP~~~~~~~~L~~~ 325 (358)
..+..+++|+.|+++++ .++.+|.. .+++|+.|++++|+-. ..+|......+.|+.+
T Consensus 208 -----~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 208 -----PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp -----GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred -----HhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 23566778888888765 56666665 6778888888877643 2455545455544443
No 66
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.36 E-value=6.2e-12 Score=115.82 Aligned_cols=230 Identities=17% Similarity=0.083 Sum_probs=120.8
Q ss_pred CccCCchhhcCccccEEEeeecCCCcceecccchhh-hhhcCCCCCceEEEEccCc-hhHHHHHhhhccccccccceEEE
Q 039808 15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVV-LEVCNLTELSSLCFHFPEI-KLLELFLQRCVAWNAQCLTEFRI 92 (358)
Q Consensus 15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~~~~~~l-~~l~~~~~~~~~~~~~~L~~l~i 92 (358)
+.||.++ ..++++|+|++ +.++ .++ ..+.++++|++|++..+.+ +.++. + ....+.++.++.+
T Consensus 22 t~iP~~l---~~~l~~L~Ls~-N~i~-------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~--~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 22 TEIPSDL---PRNAIELRFVL-TKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEA--D--VFSNLPKLHEIRI 86 (350)
T ss_dssp CSCCTTC---CTTCSEEEEES-CCCS-------EECTTSSTTCTTCCEEEEECCTTCCEECT--T--SBCSCTTCCEEEE
T ss_pred CccCcCc---CCCCCEEEccC-CcCC-------CcCHHHHcCCCCCCEEECcCCCCCCccCh--h--Hhhcchhhhhhhc
Confidence 5678765 36799999998 4443 333 3578999999999987765 33332 1 0002223332222
Q ss_pred EEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808 93 VVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 172 (358)
..+.. ...++...+..+++|+.|++.++ .+..++...+....++..|++.++
T Consensus 87 ~~~N~---------------------------l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 87 EKANN---------------------------LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEETT---------------------------CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESC
T ss_pred ccCCc---------------------------ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccc
Confidence 11100 01122222334555666666555 454444433444455666666655
Q ss_pred CCceEecCCCCccccCC-CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808 173 PKIETVVDGKELTTVIF-PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE 251 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~ 251 (358)
..+..++... .... ..++.|.+++. .++.++. ......+|+++.+.++..++.+++ ..++.+++|+.|+++
T Consensus 139 ~~i~~l~~~~---f~~~~~~l~~L~L~~N-~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 139 INIHTIERNS---FVGLSFESVILWLNKN-GIQEIHN---SAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDIS 210 (350)
T ss_dssp TTCCEECTTS---STTSBSSCEEEECCSS-CCCEECT---TSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECT
T ss_pred cccccccccc---hhhcchhhhhhccccc-cccCCCh---hhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcC
Confidence 5555553332 1122 24555655553 2333321 112234566666666666665533 344566667777766
Q ss_pred cCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeC
Q 039808 252 DCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYD 305 (358)
Q Consensus 252 ~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~ 305 (358)
++ .+..++ ...|.+|+.|.+.++.+++.+|.- .+++|+.+++.+
T Consensus 211 ~N-~l~~lp---------~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 211 RT-RIHSLP---------SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TS-CCCCCC---------SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CC-CcCccC---------hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 64 455554 345666666666666666666654 666666666643
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=6.6e-12 Score=112.09 Aligned_cols=193 Identities=12% Similarity=0.125 Sum_probs=96.3
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. .++......+++|+.|++.++ .+..+....+.++++|++|++++|..+..+.... ...+++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~---~~~l~~L~ 108 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLH 108 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT---TTTCTTCC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH---hcCCcCCC
Confidence 45555554432 222233344566666666665 4555433345666666666666664344332111 34456666
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL 273 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l 273 (358)
+|+++++.- ..+. +...+.+++|++|++.++. ++.+++ ..++.+++|+.|+++++ .+..++. ..+..+
T Consensus 109 ~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~------~~~~~l 176 (285)
T 1ozn_A 109 TLHLDRCGL-QELG--PGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN-RISSVPE------RAFRGL 176 (285)
T ss_dssp EEECTTSCC-CCCC--TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCEECT------TTTTTC
T ss_pred EEECCCCcC-CEEC--HhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC-cccccCH------HHhcCc
Confidence 666665432 2211 1123345666666666652 333322 23455666666666664 3333330 124456
Q ss_pred CCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEE
Q 039808 274 PRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIK 326 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~ 326 (358)
++|+.|+++++ .++.+... .+++|+.|++++| .++.+|.. ...+++|+.+.
T Consensus 177 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEE
T ss_pred cccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEe
Confidence 66666666555 34444222 5566666666665 35555432 34455555553
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=1.1e-11 Score=114.25 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=142.2
Q ss_pred ccccccCCceEEeeCCC--C-ChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccc
Q 039808 110 AFDYNKQGKCLRFINGE--N-IPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTT 186 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 186 (358)
.+..+.+|+.|.+.++. + ++...+..++++..+....+..+..++...+..+++|++|++++|. +..+++.. .
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~---~ 124 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH---K 124 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCT---T
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchh---h
Confidence 34445577778777764 2 3334445567777655555447888876678999999999999884 44343321 2
Q ss_pred cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808 187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII 266 (358)
Q Consensus 187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 266 (358)
....++..|.+.++..+..+...... +....++.|++.++ +++.+.+. +...++|+.|.+.++..++.++.
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~----- 195 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPN----- 195 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCT-----
T ss_pred cccchhhhhhhccccccccccccchh-hcchhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCH-----
Confidence 33456777888777666665322211 12246888998875 56666442 23567899999998888888872
Q ss_pred ccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808 267 DSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
..+..+++|+.|+++++ .++.+|...+.+|+.|.+.+|..++.+|. +..+++|+.+..
T Consensus 196 -~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 196 -DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp -TTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred -HHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 24578899999999876 79999888899999999999999999995 567788888754
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=2e-11 Score=106.05 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=138.7
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
..+++.|++.++ .+..++...++++++|++|++++|..++.++... ...+++|++|++++|..++.+.. ..++.
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~l~~~n~l~~i~~--~~f~~ 103 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS---FYNLSKVTHIEIRNTRNLTYIDP--DALKE 103 (239)
T ss_dssp CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT---EESCTTCCEEEEEEETTCCEECT--TSEEC
T ss_pred CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhH---cCCCcCCcEEECCCCCCeeEcCH--HHhCC
Confidence 458999999999 7888877678999999999999987577775442 56789999999998777776532 22456
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCcc---EEEEecCCccccccccccccccccccCCCcc-eecccccccccccc
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLE---DLTVEDCPAIEEIISEGEIIDSGCTALPRLK-KLTLHYLPGLVTIW 291 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~---~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~ 291 (358)
+++|++|++.++. ++.++. +..+++|+ .|+++++..+..++. ..+..+++|+ .|+++++ .++.++
T Consensus 104 l~~L~~L~l~~n~-l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n-~l~~i~ 172 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNN-GFTSVQ 172 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSC-CCCEEC
T ss_pred CCCCCEEeCCCCC-Cccccc---cccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCC-CCcccC
Confidence 8999999999974 555532 56777887 999999877777662 2367789999 9999776 678888
Q ss_pred CC--CCCCccEEeeeCCcCCCccCCC-CCCC-CCeeEEEecc
Q 039808 292 SS--AWPSLEYVSFYDCPRLKNIGLG-SNLK-HSVMEIKAEK 329 (358)
Q Consensus 292 ~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~-~~L~~~~~~~ 329 (358)
.. ..++|++|++++|+.++.+|.. ...+ ++|+.+....
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 76 4489999999999889999765 4567 8899887653
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=2e-11 Score=108.38 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=132.6
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..++... ...+++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA---FSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhh---hcCCcccc
Confidence 67888887664 333334556788999999988 7777765568889999999998875 34443221 56678999
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL 273 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l 273 (358)
+|.+.++.. ..+. +...+.+++|++|+++++. ++.+..+..++.+++|+.|+++++. +..++. ..+..+
T Consensus 104 ~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l 172 (276)
T 2z62_A 104 KLVAVETNL-ASLE--NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------TDLRVL 172 (276)
T ss_dssp EEECTTSCC-CCST--TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG------GGGHHH
T ss_pred EEECCCCCc-cccC--chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH------HHhhhh
Confidence 999987643 3321 2235678899999998874 4443212456788999999999873 444331 124445
Q ss_pred CCcc----eeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCC-CCCCCeeEEEe
Q 039808 274 PRLK----KLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVMEIKA 327 (358)
Q Consensus 274 ~~L~----~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~~~~ 327 (358)
++|+ .|+++++ .++.++.. ...+|++|++++|. ++.+|... ..+++|+.+.-
T Consensus 173 ~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 173 HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp HTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEEC
T ss_pred hhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEc
Confidence 5555 6777665 57777665 55689999999875 88887764 56788887754
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.33 E-value=2.2e-11 Score=108.01 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=116.2
Q ss_pred ccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808 110 AFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF 189 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 189 (358)
....+.+++.|.+.++.-........+++|+.|++.++ .+..++ .++.+++|++|++++|. +..++... ...+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~---~~~l 108 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQ-LQSLPNGV---FDKL 108 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSC-CCCCCTTT---TTTC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCc-cCccChhH---hcCC
Confidence 44445567777776654211122445788888888887 555554 47788888888888873 33332221 4567
Q ss_pred CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808 190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG 269 (358)
Q Consensus 190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 269 (358)
++|++|+++++. ++.+. +...+.+++|++|++.+| .++.+++ ..++.+++|+.|++++| .+..++. ..
T Consensus 109 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~------~~ 176 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLP--DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPE------GV 176 (272)
T ss_dssp TTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TT
T ss_pred cCCCEEECCCCc-CCccC--HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCH------HH
Confidence 888888888764 33321 112356788888888887 4555533 34567888888888887 3444431 22
Q ss_pred cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCC
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRL 309 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L 309 (358)
+..+++|+.|+++++ .++.++.. .+++|+.|++++++-.
T Consensus 177 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 467788888888776 56666654 6888888888887533
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=1.3e-12 Score=128.47 Aligned_cols=285 Identities=9% Similarity=0.040 Sum_probs=156.3
Q ss_pred cccceeccCCCCccC-------CchhhcCccccEEEeeecCCCccee-------------c-------ccchhhhhhcCC
Q 039808 4 SCNVEYVKMPPQLIS-------SGIISRLHALKTLSIVVYPGDKRWY-------------K-------DVKSVVLEVCNL 56 (358)
Q Consensus 4 l~~L~~l~L~~~~ip-------~~~i~~L~~L~~L~l~~~~~~~~~~-------------~-------~~~~~~~~l~~l 56 (358)
+.+|++|+++...+. ..++.++++|++|+++++ .+..+. . ........+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 456777777663332 112456777888877762 221100 0 000112234555
Q ss_pred CCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHh
Q 039808 57 TELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQ 134 (358)
Q Consensus 57 ~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~ 134 (358)
++|+.+.+.......++..+. .+++|+++.+. ... +....-...+..+++|+.|.+.++. .....+..
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~-----~~~~L~~L~Ls---~~~--l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFP-----FAAQIRKLDLL---YAL--LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGG-----GGGGCCEEEET---TCC--CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred ccccccCccccchhHHHHHHh-----hcCCCcEEecC---CCc--CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 555555553333333443323 45677777762 110 0000000123556688888887332 11123345
Q ss_pred hccCccEEEecc----------CCCCCccCcc-cccCccCCcEEEeecCCCceE-ecCCCCccccCCCccceeecccc--
Q 039808 135 ILACCTAFYLDN----------HLHINSLSDF-GVRSINGLKFCIISECPKIET-VVDGKELTTVIFPSLENLSIHHL-- 200 (358)
Q Consensus 135 ~l~~L~~L~l~~----------~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-- 200 (358)
.+++|+.|++.+ |..+...... ....+++|++|++..+ .+.. .+.. -...+++|++|.+.++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~---l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLES---IGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHH---HHHHCCSCCEEEEEECSC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHH---HHhhCCCCcEEEEeecCC
Confidence 578899999985 5444432111 1356899999999443 4432 1111 0123789999999854
Q ss_pred -ccccccccc---ccCCCcCccccEEeEecCCC-ccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCC
Q 039808 201 -WNLTHICEG---SVPNGSFARLRILSVHACPK-LKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPR 275 (358)
Q Consensus 201 -~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~ 275 (358)
..++..+.. +.....+++|++|+++.|.. +.......+...+++|+.|++++|. +.... .......+++
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~ 489 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG-----LMEFSRGCPN 489 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH-----HHHHHTCCTT
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH-----HHHHHhcCcc
Confidence 344432100 00023478999999988764 4443333344568999999999875 32210 0012457899
Q ss_pred cceeccccccccccc--cCC--CCCCccEEeeeCCcCCCc
Q 039808 276 LKKLTLHYLPGLVTI--WSS--AWPSLEYVSFYDCPRLKN 311 (358)
Q Consensus 276 L~~L~l~~c~~L~~~--~~~--~~~~L~~L~i~~C~~L~~ 311 (358)
|++|++++|+ ++.. +.. .+++|++|++++|. ++.
T Consensus 490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 9999999997 5432 211 68999999999997 443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=2.5e-11 Score=108.77 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=66.4
Q ss_pred hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808 135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG 214 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 214 (358)
.+++|+.|++.++ .+..++. .+.+++|++|++++|. +..++.. ...+++|++|.+++.. ++.+. +..++
T Consensus 53 ~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~-l~~l~~~----~~~l~~L~~L~l~~N~-l~~l~--~~~~~ 121 (290)
T 1p9a_G 53 PYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQ-LQSLPLL----GQTLPALTVLDVSFNR-LTSLP--LGALR 121 (290)
T ss_dssp TCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSC-CSSCCCC----TTTCTTCCEEECCSSC-CCCCC--SSTTT
T ss_pred cCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCc-CCcCchh----hccCCCCCEEECCCCc-CcccC--HHHHc
Confidence 3455555555555 4444432 2455555555555542 2223221 2344555555554432 22221 11123
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
.+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .++.++. ..+..+++|+.|+++++ .++.++..
T Consensus 122 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~------~~~~~l~~L~~L~L~~N-~l~~ip~~~ 191 (290)
T 1p9a_G 122 GLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPA------GLLNGLENLDTLLLQEN-SLYTIPKGF 191 (290)
T ss_dssp TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccCH------HHhcCcCCCCEEECCCC-cCCccChhh
Confidence 4455555555554 2333322 23344555555555543 2333330 11234455555555443 44445444
Q ss_pred -CCCCccEEeeeCC
Q 039808 294 -AWPSLEYVSFYDC 306 (358)
Q Consensus 294 -~~~~L~~L~i~~C 306 (358)
..++|+.+++.++
T Consensus 192 ~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 192 FGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTCCCSEEECCSC
T ss_pred cccccCCeEEeCCC
Confidence 4445555555543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.29 E-value=4.4e-11 Score=105.92 Aligned_cols=174 Identities=16% Similarity=0.226 Sum_probs=90.7
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..++.. ....+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIG---VFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTT---TTTTCSSCC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHh---HcccccCCC
Confidence 44555554432 233323344566666666665 5555554345666667777776653 3323221 134456666
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL 273 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l 273 (358)
+|.++++. ++.+. +..++.+++|++|+++++ .++.+++ ..++.+++|+.|+++++ .+..++. ..+..+
T Consensus 113 ~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~------~~~~~l 180 (270)
T 2o6q_A 113 ELRLDRNQ-LKSLP--PRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPE------GAFDKL 180 (270)
T ss_dssp EEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTC
T ss_pred EEECCCCc-cCeeC--HHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeCh------hHhccC
Confidence 66666542 22221 111345566677766665 3444322 23456667777776665 3333320 124456
Q ss_pred CCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 274 PRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
++|+.|+++++ .++.++.. .+++|+.|+++++|
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 66777777655 55555554 46666777766654
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=6.6e-11 Score=116.96 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=57.4
Q ss_pred hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808 239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
+..+++|+.|+++++.....+. ...+..+++|+.|+++++ .++.++.. .+++|++|+++++ +++.+|..
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~------~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFL------PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE------CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred cccchhhhhhhhhhcccccccC------chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChh
Confidence 3455666666666554443322 134677889999999887 67777655 7899999999997 58888654
Q ss_pred -CCCCCCeeEEEec
Q 039808 316 -SNLKHSVMEIKAE 328 (358)
Q Consensus 316 -~~~~~~L~~~~~~ 328 (358)
+..+++|+.++..
T Consensus 537 ~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 537 PYKCLNSLQVLDYS 550 (635)
T ss_dssp GGTTCTTCCEEECT
T ss_pred HHhCCCCCCEEECC
Confidence 5667888888653
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.28 E-value=9.6e-11 Score=104.93 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=140.8
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
.+++.+.+.+.. .+|.. ..++++.|++.++ .+..+....+.++++|++|++++|. +..++.. ..+++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~---~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~l~~L 79 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPD---LPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-----GTLPVL 79 (290)
T ss_dssp TTCCEEECTTSCCSSCCSC---CCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-----SCCTTC
T ss_pred CCccEEECCCCCCCcCCCC---CCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-----CCCCcC
Confidence 355666655432 34432 2468899999998 6777765568999999999999984 5555332 478999
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA 272 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 272 (358)
++|++++. .++.+ +.....+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++. ..+..
T Consensus 80 ~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~ 146 (290)
T 1p9a_G 80 GTLDLSHN-QLQSL---PLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLPP------GLLTP 146 (290)
T ss_dssp CEEECCSS-CCSSC---CCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT------TTTTT
T ss_pred CEEECCCC-cCCcC---chhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccCh------hhccc
Confidence 99999886 34444 333467899999999987 5666544 35678999999999987 5555541 23567
Q ss_pred CCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808 273 LPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA 327 (358)
Q Consensus 273 l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~ 327 (358)
+++|+.|+++++ .++.++.. .+++|+.|+++++ .++.+|.+....++|+.+.-
T Consensus 147 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 147 TPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEEC
T ss_pred ccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEe
Confidence 899999999776 78888876 6899999999997 58999999888888888754
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=5.5e-12 Score=114.25 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=113.6
Q ss_pred cCCceEEeeCCC---CChHHH-HhhccCccEEEeccCCCCCccCcccccCc-----cCCcEEEeecCCCceEecCCCCcc
Q 039808 115 KQGKCLRFINGE---NIPDAV-LQILACCTAFYLDNHLHINSLSDFGVRSI-----NGLKFCIISECPKIETVVDGKELT 185 (358)
Q Consensus 115 ~~L~~L~l~~~~---~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~ 185 (358)
.+|+.|.+.++. ..+..+ ...+++|+.|++.++ .+..++. .++.+ ++|++|++++|.. ..++.. .
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~---~ 168 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDA-WLAELQQWLKPGLKVLSIAQAHS-LNFSCE---Q 168 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSS-HHHHHHTTCCTTCCEEEEESCSC-CCCCTT---T
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhH-HHHHHHHhhcCCCcEEEeeCCCC-ccchHH---H
Confidence 355666655542 122222 144666777777666 4544432 34444 6777777776643 222211 1
Q ss_pred ccCCCccceeeccccccccccccc-ccCCCcCccccEEeEecCCCccccC--chhhhccCCCccEEEEecCCcccccccc
Q 039808 186 TVIFPSLENLSIHHLWNLTHICEG-SVPNGSFARLRILSVHACPKLKFVF--SSFMIHFMSNLEDLTVEDCPAIEEIISE 262 (358)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~l~~L~~L~i~~c~~l~~i~~~ 262 (358)
...+++|++|+++++.-.+.+... ....+.+++|++|+++++. ++.++ +..++..+++|+.|+++++. +...+.
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~- 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAG- 245 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC-
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc-
Confidence 445677777777766533221100 1112456788888887763 44221 12344567888888888764 332210
Q ss_pred ccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808 263 GEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE 328 (358)
Q Consensus 263 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~ 328 (358)
......+++|+.|+++++ .++.+|....++|++|+++++ +++.+|. ...+++|+.++-.
T Consensus 246 ----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 246 ----APSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp ----CSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECT
T ss_pred ----hhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEecc
Confidence 012345678888888776 577776662378888888887 5777777 6677777777543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=4.8e-11 Score=107.86 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=120.9
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
.+..+++|+.|.+.++. .++. ...+++|+.|++.++ .+..++ .+..+++|++|++++|. +..++ ...
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~-----~l~ 126 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--AIAGLQSIKTLDLTSTQ-ITDVT-----PLA 126 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--GGTTCTTCCEEECTTSC-CCCCG-----GGT
T ss_pred hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch--hhcCCCCCCEEECCCCC-CCCch-----hhc
Confidence 45566678888887764 3333 556788888888888 566665 47788888888888874 33331 155
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID 267 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 267 (358)
.+++|++|+++++. +..+. ..+.+++|++|++++| .++.+.+ +..+++|+.|+++++ .+..++
T Consensus 127 ~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~------- 189 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDIS------- 189 (308)
T ss_dssp TCTTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-------
T ss_pred CCCCCCEEECCCCc-cCcCc----cccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcCh-------
Confidence 67888888888764 33321 1456788888888887 4555422 577888888888876 444443
Q ss_pred cccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCC
Q 039808 268 SGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 268 ~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
....+++|+.|+++++ .++.++.- .+++|+.|++++++ +...|..
T Consensus 190 -~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~~ 235 (308)
T 1h6u_A 190 -PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-ITNQPVF 235 (308)
T ss_dssp -GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-EECCCEE
T ss_pred -hhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-eecCCee
Confidence 2667888888888776 56666544 78889999988875 5665543
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=4.5e-11 Score=100.68 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=105.1
Q ss_pred hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808 134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN 213 (358)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 213 (358)
..+++++.|++.++ .+..++ .+..+++|++|++++| .+..+ . ....+++|++|+++++.-.... +...
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~~-~----~l~~l~~L~~L~l~~n~l~~~~---~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATNY-N----PISGLSNLERLRIMGKDVTSDK---IPNL 108 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSCC-G----GGTTCTTCCEEEEECTTCBGGG---SCCC
T ss_pred hhcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCcc-h----hhhcCCCCCEEEeECCccCccc---Chhh
Confidence 44677888888877 666666 4778888888888887 33332 1 2456788888888876432222 2234
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
+.+++|++|++++|. ++...+ ..++.+++|+.|++++|..+..++ .+..+++|+.|++++| .++.++.-
T Consensus 109 ~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~--------~l~~l~~L~~L~l~~n-~i~~~~~l 177 (197)
T 4ezg_A 109 SGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIM--------PLKTLPELKSLNIQFD-GVHDYRGI 177 (197)
T ss_dssp TTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCG--------GGGGCSSCCEEECTTB-CCCCCTTG
T ss_pred cCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccH--------hhcCCCCCCEEECCCC-CCcChHHh
Confidence 567888999888874 443222 346788899999998887666654 4677888999999776 56666533
Q ss_pred -CCCCccEEeeeCCc
Q 039808 294 -AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 -~~~~L~~L~i~~C~ 307 (358)
.+++|++|++++++
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 78889999888864
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.26 E-value=1.8e-10 Score=101.90 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=131.1
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
.++++.|++.++ .+..++...+.++++|++|++++|. +..++... ...+++|++|.++++. ++.+. +...+.
T Consensus 36 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~-l~~~~--~~~~~~ 107 (270)
T 2o6q_A 36 PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI---FKELKNLETLWVTDNK-LQALP--IGVFDQ 107 (270)
T ss_dssp CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT---TSSCTTCCEEECCSSC-CCCCC--TTTTTT
T ss_pred CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh---hcCCCCCCEEECCCCc-CCcCC--HhHccc
Confidence 467999999998 7777776568999999999999874 44443331 3568999999998864 34332 122356
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-- 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-- 293 (358)
+++|++|++.++ .++.+++ ..++.+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++..
T Consensus 108 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 177 (270)
T 2o6q_A 108 LVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYN-ELQSLPK------GVFDKLTSLKELRLYNN-QLKRVPEGAF 177 (270)
T ss_dssp CSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred ccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCC-cCCccCH------hHccCCcccceeEecCC-cCcEeChhHh
Confidence 899999999986 4555543 35678999999999987 4555541 23677899999999877 67777765
Q ss_pred -CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808 294 -AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA 327 (358)
Q Consensus 294 -~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~ 327 (358)
.+++|++|++++| .++.+|.. +..+++|+.+.-
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 178 DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEe
Confidence 7899999999998 68888876 566888988865
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=5.4e-11 Score=107.53 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=120.8
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI 101 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 101 (358)
...+.+|++|++++ +.+.. . ..+..+++|++|++..+.+..++. +. .+++
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~-------l-~~~~~l~~L~~L~L~~n~i~~~~~-~~-----~l~~--------------- 86 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTT-------I-EGVQYLNNLIGLELKDNQITDLAP-LK-----NLTK--------------- 86 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGG-GT-----TCCS---------------
T ss_pred HHHcCCcCEEEeeC-CCccC-------c-hhhhccCCCCEEEccCCcCCCChh-Hc-----cCCC---------------
Confidence 45688889998887 33321 1 247778888888887666655432 12 2333
Q ss_pred cccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEec
Q 039808 102 VSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVV 179 (358)
Q Consensus 102 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 179 (358)
|+.|.+.++. .++ ....+++|+.|++.++ .+..++ .+..+++|++|++++|. +..++
T Consensus 87 ---------------L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-l~~~~ 145 (308)
T 1h6u_A 87 ---------------ITELELSGNPLKNVS--AIAGLQSIKTLDLTST-QITDVT--PLAGLSNLQVLYLDLNQ-ITNIS 145 (308)
T ss_dssp ---------------CCEEECCSCCCSCCG--GGTTCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECCSSC-CCCCG
T ss_pred ---------------CCEEEccCCcCCCch--hhcCCCCCCEEECCCC-CCCCch--hhcCCCCCCEEECCCCc-cCcCc
Confidence 3444443332 111 2334677777777777 566555 37778888888887773 33221
Q ss_pred CCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccc
Q 039808 180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEI 259 (358)
Q Consensus 180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i 259 (358)
. ...+++|++|+++++. ++.+. ..+.+++|+.|+++++ .++.+.+ +..+++|+.|++++| .+..+
T Consensus 146 ~-----l~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~ 210 (308)
T 1h6u_A 146 P-----LAGLTNLQYLSIGNAQ-VSDLT----PLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDV 210 (308)
T ss_dssp G-----GGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBC
T ss_pred c-----ccCCCCccEEEccCCc-CCCCh----hhcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcc
Confidence 1 4567788888887763 33321 1456788888888876 3555422 567888888888886 44444
Q ss_pred cccccccccccccCCCcceeccccccccccccC
Q 039808 260 ISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS 292 (358)
Q Consensus 260 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 292 (358)
+ ....+++|+.|+++++ .++..+.
T Consensus 211 ~--------~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 211 S--------PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp G--------GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred c--------cccCCCCCCEEEccCC-eeecCCe
Confidence 3 3667888888888776 3554443
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=5.3e-11 Score=105.53 Aligned_cols=188 Identities=16% Similarity=0.160 Sum_probs=128.2
Q ss_pred cccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCC
Q 039808 111 FDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFP 190 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 190 (358)
+..+++|+.|.+.++.-........+++|+.|++.++ .+..++...++++++|++|++++|. +..++.. ....++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~ 133 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG---VFDKLT 133 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCT
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHH---HhccCC
Confidence 4445567777776654111123456788999999888 7777665557889999999999884 3333322 145678
Q ss_pred ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccc
Q 039808 191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC 270 (358)
Q Consensus 191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 270 (358)
+|++|+++++ .++.+. +...+.+++|++|++++| +++.+++ ..++.+++|+.|+++++. +..++. ..+
T Consensus 134 ~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~ 201 (272)
T 3rfs_A 134 NLTYLNLAHN-QLQSLP--KGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPD------GVF 201 (272)
T ss_dssp TCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT------TTT
T ss_pred CCCEEECCCC-ccCccC--HHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCH------HHH
Confidence 9999999887 344432 122356789999999987 4665533 356788999999999874 444431 235
Q ss_pred ccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808 271 TALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKH 320 (358)
Q Consensus 271 ~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~ 320 (358)
..+++|+.|++++++-.. .+++|+.++++++..-..+|.....++
T Consensus 202 ~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred hCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 778999999998874221 467888888888776667787766544
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=2.9e-11 Score=109.47 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=138.3
Q ss_pred cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhh----ccCccEEEeccCCCCCccCcc
Q 039808 83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQI----LACCTAFYLDNHLHINSLSDF 156 (358)
Q Consensus 83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~----l~~L~~L~l~~~~~~~~l~~~ 156 (358)
.+++|+.+.+...... ...|....+..+++|+.|.+.++. +.+..+... +++|+.|++.++ .+..++..
T Consensus 93 ~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVT----GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCB----SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT
T ss_pred CcCCccEEEccCCccc----chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH
Confidence 4667777776432221 233331112566789999998874 444333332 289999999999 77777655
Q ss_pred cccCccCCcEEEeecCCCceEe--cCCCCccccCCCccceeecccccccccccccc-cCCCcCccccEEeEecCCCcccc
Q 039808 157 GVRSINGLKFCIISECPKIETV--VDGKELTTVIFPSLENLSIHHLWNLTHICEGS-VPNGSFARLRILSVHACPKLKFV 233 (358)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l 233 (358)
.++++++|++|++++|.....+ +.. .....+++|++|+++++. ++.+...+ .....+++|++|+++++. ++..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 6899999999999998644321 111 012568999999999874 33221111 111356899999999874 5554
Q ss_pred CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808 234 FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP 307 (358)
Q Consensus 234 ~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~ 307 (358)
.+...+..+++|+.|+++++ .+..++ ...+++|+.|+++++ .++.+|.- .+++|++|++++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N-~l~~ip---------~~~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFT-GLKQVP---------KGLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTS-CCSSCC---------SSCCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCC-ccChhh---------hhccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 43334566899999999997 455665 122289999999876 78877655 89999999999975
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=5.2e-13 Score=127.37 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=75.6
Q ss_pred ccceeccCCCCccC----CchhhcCc----cccEEEeeecCCCcceeccc-chhhhhhcCCCCCceEEEEccCchhHH-H
Q 039808 5 CNVEYVKMPPQLIS----SGIISRLH----ALKTLSIVVYPGDKRWYKDV-KSVVLEVCNLTELSSLCFHFPEIKLLE-L 74 (358)
Q Consensus 5 ~~L~~l~L~~~~ip----~~~i~~L~----~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~~~~~~l~~l~-~ 74 (358)
.+|++|+++...+. ..+...+. +|++|++++ +.+. ..+ ...+..+.++++|++|++..+.+.... .
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLT---GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTT-SCCB---GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccC-CCCC---HHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 45666666653321 12222344 466666665 2221 110 133556778888888888766654321 1
Q ss_pred HHhhhccccccccceEEEEEeCccccccccCC--c-ccccccccCCceEEeeCCCCChH----HHHh----hccCccEEE
Q 039808 75 FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVP--D-AVAFDYNKQGKCLRFINGENIPD----AVLQ----ILACCTAFY 143 (358)
Q Consensus 75 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~--~-~~~l~~~~~L~~L~l~~~~~~~~----~~~~----~l~~L~~L~ 143 (358)
.+.........+|+++.+. .+ . +.... . ...+..+++|+.|.+.++. +.. .+.. ..++|+.|+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~---~n-~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLE---YC-S-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHTSTTCCCCEEECT---TS-C-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHhcCCCcceEEECC---CC-C-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEE
Confidence 1111000013356666651 11 0 01000 0 0133344577788777664 222 1111 134788888
Q ss_pred eccCCCCCc-----cCcccccCccCCcEEEeecCC
Q 039808 144 LDNHLHINS-----LSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 144 l~~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~ 173 (358)
+.+| .+.. ++. .+..+++|++|++++|.
T Consensus 206 L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 206 LESC-GVTSDNCRDLCG-IVASKASLRELALGSNK 238 (461)
T ss_dssp CTTS-CCBTTHHHHHHH-HHHHCTTCCEEECCSSB
T ss_pred ccCC-CCcHHHHHHHHH-HHHhCCCccEEeccCCc
Confidence 8777 4443 222 35567777788777763
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=3.9e-12 Score=125.12 Aligned_cols=190 Identities=10% Similarity=-0.006 Sum_probs=90.3
Q ss_pred cccCCceEEeeCCC-CChHH----HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC---------------
Q 039808 113 YNKQGKCLRFINGE-NIPDA----VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC--------------- 172 (358)
Q Consensus 113 ~~~~L~~L~l~~~~-~~~~~----~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~--------------- 172 (358)
.+++|+.|.+.++. .+... +...+++|+.|++.+|..+..++. .+..+++|++|.+..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 34467777776654 23222 123357777777777644444333 2556666666664333
Q ss_pred ----CCceEecCCC---Cccc----cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808 173 ----PKIETVVDGK---ELTT----VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF 241 (358)
Q Consensus 173 ----~~~~~~~~~~---~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~ 241 (358)
++++.+.+.. .... ..+++|++|++++|. +..... ......+++|++|++.+| +.......+...
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l-~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~ 336 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDL-VKLLCQCPKLQRLWVLDY--IEDAGLEVLAST 336 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHH-HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHH-HHHHhcCCCcCEEeCcCc--cCHHHHHHHHHh
Confidence 2233221000 0001 134677777777665 332100 000234577777777776 222211223345
Q ss_pred CCCccEEEEecC--------CccccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeee-----
Q 039808 242 MSNLEDLTVEDC--------PAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFY----- 304 (358)
Q Consensus 242 l~~L~~L~i~~c--------~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~----- 304 (358)
+++|++|++.+| ..+.... ...-...+++|+.|.+ +|+.++..... .+++|+.|++.
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~-----l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQG-----LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHH-----HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHH-----HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 677777777443 2221100 0000123566666633 44455433222 36677777776
Q ss_pred CCcCCCccC
Q 039808 305 DCPRLKNIG 313 (358)
Q Consensus 305 ~C~~L~~lP 313 (358)
+|..++..|
T Consensus 411 ~~~~l~~~~ 419 (594)
T 2p1m_B 411 APDYLTLEP 419 (594)
T ss_dssp CCCTTTCCC
T ss_pred CcccccCCc
Confidence 555565444
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=5.3e-11 Score=105.65 Aligned_cols=175 Identities=17% Similarity=0.179 Sum_probs=115.9
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
.+|+.|.+.++. .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..+... ....+++|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L 126 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENF---PIGHLKTL 126 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTC---CCTTCTTC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCch---hcccCCCC
Confidence 356666665543 233334455788888988888 6666665468889999999998874 3333222 15667899
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCcc----EEEEecCCcccccccccccccc
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLE----DLTVEDCPAIEEIISEGEIIDS 268 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~----~L~i~~c~~l~~i~~~~~~~~~ 268 (358)
++|+++++.- +.+. .+...+.+++|++|+++++. ++.+++. .+..+++|+ .|+++++ .+..++ .
T Consensus 127 ~~L~l~~n~l-~~~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~l~l~L~ls~n-~l~~~~-------~ 194 (276)
T 2z62_A 127 KELNVAHNLI-QSFK-LPEYFSNLTNLEHLDLSSNK-IQSIYCT-DLRVLHQMPLLNLSLDLSLN-PMNFIQ-------P 194 (276)
T ss_dssp CEEECCSSCC-CCCC-CCGGGGGCTTCCEEECCSSC-CCEECGG-GGHHHHTCTTCCEEEECCSS-CCCEEC-------T
T ss_pred CEEECcCCcc-ceec-CchhhccCCCCCEEECCCCC-CCcCCHH-HhhhhhhccccceeeecCCC-cccccC-------c
Confidence 9999987643 2211 12234567899999999874 5555332 334455555 7888875 444444 2
Q ss_pred ccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 269 GCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 269 ~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
.....++|+.|+++++ .++.++.. .+++|++|++++++
T Consensus 195 ~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 195 GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 3344558999999877 58888776 68999999999764
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=1.2e-12 Score=124.72 Aligned_cols=159 Identities=10% Similarity=0.032 Sum_probs=91.0
Q ss_pred cccceeccCCCCccC----CchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhh
Q 039808 4 SCNVEYVKMPPQLIS----SGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQR 78 (358)
Q Consensus 4 l~~L~~l~L~~~~ip----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~ 78 (358)
+.+|++|+|+...+. ..++..+++|++|+++++ .+..- ....++..+..+++|++|++..+.+.... ..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEA--RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHH--HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHH--HHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 567889999874443 223678999999999983 23210 00134566888999999999777765421 11111
Q ss_pred hcccccc----ccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChH----HHHhh----ccCccEEEecc
Q 039808 79 CVAWNAQ----CLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPD----AVLQI----LACCTAFYLDN 146 (358)
Q Consensus 79 ~~~~~~~----~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~----l~~L~~L~l~~ 146 (358)
.+. +|+.+.+........-+..++ ..+..+++|+.|.+.++. +.. .+... .++|+.|++.+
T Consensus 79 ----~l~~~~~~L~~L~L~~n~i~~~~~~~l~--~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 79 ----GLQTPSCKIQKLSLQNCCLTGAGCGVLS--STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp ----TTCSTTCCCCEEECTTSCCBGGGHHHHH--HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ----HHhhCCCceeEEEccCCCCCHHHHHHHH--HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 223 577777511000000000111 245566688888887765 222 22222 34688888888
Q ss_pred CCCCCccCc----ccccCccCCcEEEeecCC
Q 039808 147 HLHINSLSD----FGVRSINGLKFCIISECP 173 (358)
Q Consensus 147 ~~~~~~l~~----~~l~~l~~L~~L~l~~~~ 173 (358)
| .+..... ..+..+++|++|++++|.
T Consensus 152 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 152 C-SLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp S-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred C-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 7 5543211 135567888888888775
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.18 E-value=4.2e-12 Score=124.89 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcC
Q 039808 242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPR 308 (358)
Q Consensus 242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~ 308 (358)
+++|+.|++++|. +.... ...-...+++|+.|++++|+. +..... .+++|++|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~-----~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLG-----MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHH-----HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHH-----HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5666666666654 21100 000124588999999988864 332221 578999999999975
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.17 E-value=4.1e-12 Score=115.98 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=128.5
Q ss_pred ccccCCceEEeeCCCCC---hHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE--ecCCCCccc
Q 039808 112 DYNKQGKCLRFINGENI---PDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET--VVDGKELTT 186 (358)
Q Consensus 112 ~~~~~L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~ 186 (358)
..+.+|+.|.+.++.-. .......+++|+.|++.++ .+.......++.+++|++|++++|..+.. ++.. .
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----~ 164 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----L 164 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH----H
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH----H
Confidence 34568999999887521 2234566899999999998 55432222578899999999999965542 2111 4
Q ss_pred cCCCccceeecccccccccccccccCCCcCc-cccEEeEecCC-CccccCchhhhccCCCccEEEEecCCcccc-ccccc
Q 039808 187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFA-RLRILSVHACP-KLKFVFSSFMIHFMSNLEDLTVEDCPAIEE-IISEG 263 (358)
Q Consensus 187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~-~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~-i~~~~ 263 (358)
..+++|++|++++|..++.... +...+.++ +|++|++++|. .++....+..+..+++|+.|++++|..+.. .+
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--- 240 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--- 240 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---
T ss_pred hcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---
Confidence 5689999999999865554210 11134678 99999999986 454221234567899999999999975543 22
Q ss_pred cccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808 264 EIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC 306 (358)
Q Consensus 264 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C 306 (358)
..+..+++|+.|++++|..+...... .+++|++|++++|
T Consensus 241 ----~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 ----QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ----GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ----HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 24677899999999999755433222 7999999999999
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=9.2e-11 Score=106.01 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808 274 PRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI 325 (358)
Q Consensus 274 ~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~ 325 (358)
++|+.|+++++ .++.+|...+++|++|++++| +++.+|. ...+++|+.+
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp TTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCE
T ss_pred CcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCch-hhhCCCccEE
Confidence 46666666444 455554443356666666655 3555544 3344455544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=103.51 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=134.8
Q ss_pred cccccceEEEEEeCccccccccCCccccc--ccccCCceEEeeCCCCC---h---HHHHhhccCccEEEeccCCCCCccC
Q 039808 83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAF--DYNKQGKCLRFINGENI---P---DAVLQILACCTAFYLDNHLHINSLS 154 (358)
Q Consensus 83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~---~---~~~~~~l~~L~~L~l~~~~~~~~l~ 154 (358)
...+|+++.+...... ...|. .+ ..+.+|+.|.+.++.-. + ......+++|+.|++.++ .+..++
T Consensus 89 ~~~~L~~L~l~~n~l~----~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLEDLKIT----GTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFS 161 (310)
T ss_dssp HHSCCCEEEEESCCCB----SCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCC
T ss_pred ccCceeEEEeeCCEec----cchhh--hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccchhh
Confidence 3456888877311111 22222 22 55668999999887511 1 111235889999999999 677766
Q ss_pred cccccCccCCcEEEeecCCCceE--ecCCCCccccCCCccceeecccccccccccccccC-CCcCccccEEeEecCCCcc
Q 039808 155 DFGVRSINGLKFCIISECPKIET--VVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP-NGSFARLRILSVHACPKLK 231 (358)
Q Consensus 155 ~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 231 (358)
...++.+++|++|++++|..... ++... ....+++|++|.++++. ++.+...... .+.+++|++|+++++. +.
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~ 237 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAAL--CPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LR 237 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTS--CTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHH--hhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CC
Confidence 55688999999999999864432 11111 13568899999999874 3332211111 2456899999999875 55
Q ss_pred ccCchhhhcc---CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808 232 FVFSSFMIHF---MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP 307 (358)
Q Consensus 232 ~l~~~~~l~~---l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~ 307 (358)
...|.. +.. +++|+.|+++++ .+..++ ...+++|+.|+++++ .++.++.. .+++|+.|++++++
T Consensus 238 ~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp---------~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 238 ATVNPS-APRCMWSSALNSLNLSFA-GLEQVP---------KGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSC-CSSCCCCTTCCCEECCSS-CCCSCC---------SCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ccchhh-HHhccCcCcCCEEECCCC-CCCchh---------hhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 543322 233 379999999987 555665 233589999999876 68877655 89999999999975
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=6.5e-10 Score=97.21 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=100.0
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF 216 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 216 (358)
+.++.|++.++ .+..+....+.++++|++|++++|. +..++.. ....+++|++|++++.. ++.+. +..++.+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAG---VFDDLTELGTLGLANNQ-LASLP--LGVFDHL 106 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECTTSC-CCCCC--TTTTTTC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCc-CCccCHh---HhccCCcCCEEECCCCc-ccccC--hhHhccc
Confidence 46777777777 5666555457778888888887763 3333222 14556778888887753 33321 1223467
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--- 293 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--- 293 (358)
++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++..
T Consensus 107 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 176 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPA------GAFDKLTNLQTLSLSTN-QLQSVPHGAFD 176 (251)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred CCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccCH------HHcCcCcCCCEEECCCC-cCCccCHHHHh
Confidence 78888888876 4555533 34567888888888876 5555541 23567788888888766 67777654
Q ss_pred CCCCccEEeeeCCc
Q 039808 294 AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 ~~~~L~~L~i~~C~ 307 (358)
.+++|+.|++++++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 67888888888875
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.11 E-value=5.4e-10 Score=100.08 Aligned_cols=173 Identities=16% Similarity=0.242 Sum_probs=120.6
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
....+.+++.|.+.++. .++ ....+++|+.|++.++ .+..++. +.++++|++|++++|. +..++ ...
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~-----~l~ 109 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENK-VKDLS-----SLK 109 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCGG-----GGT
T ss_pred chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCc-CCCCh-----hhc
Confidence 34455577888876654 232 2455788888988888 6666664 7888899999998874 33331 155
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID 267 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 267 (358)
.+++|++|+++++. ++.+ ...+.+++|++|++++| +++.+ ..++.+++|+.|++++| .+..++
T Consensus 110 ~l~~L~~L~L~~n~-i~~~----~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~------- 172 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV------- 172 (291)
T ss_dssp TCTTCCEEECTTSC-CCCC----GGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCG-------
T ss_pred cCCCCCEEECCCCc-CCCC----hhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccch-------
Confidence 67888999888764 3333 12456788999999887 45554 34678889999999887 454444
Q ss_pred cccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccC
Q 039808 268 SGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 268 ~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP 313 (358)
....+++|+.|+++++ .++.++.- .+++|+.|++++++ +...|
T Consensus 173 -~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 173 -PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp -GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred -hhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc-ccCCc
Confidence 2677889999999776 67776544 78899999998875 44444
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=3.8e-11 Score=111.93 Aligned_cols=259 Identities=11% Similarity=0.060 Sum_probs=123.6
Q ss_pred cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceeccc-chhhhhhcCCCCCceEEEEccCch----hHHHHHh
Q 039808 6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDV-KSVVLEVCNLTELSSLCFHFPEIK----LLELFLQ 77 (358)
Q Consensus 6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~~~~~~l~----~l~~~~~ 77 (358)
.|++..++. ..++.. +..+++|++|++++ +.+. ... ..+...+..+++|++|++..+.+. .+|..+.
T Consensus 10 ~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~-n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~ 84 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSG-NTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 (386)
T ss_dssp CCEESSCCSHHHHTTSHH-HHHCSCCCEEECTT-SEEC---HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred ccccCCCCHHHHHHHHHH-HhcCCCccEEECCC-CCCC---HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH
Confidence 345555554 234444 57889999999988 2221 110 112345778999999988654332 1222111
Q ss_pred hhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCCh------HHHHhhccCccEEEeccCCCCC
Q 039808 78 RCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIP------DAVLQILACCTAFYLDNHLHIN 151 (358)
Q Consensus 78 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~ 151 (358)
... ..+..+++|+.|.+.++.-.. ......+++|+.|++.+| .+.
T Consensus 85 ~l~----------------------------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~ 135 (386)
T 2ca6_A 85 LLL----------------------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLG 135 (386)
T ss_dssp HHH----------------------------HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCH
T ss_pred HHH----------------------------HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCC
Confidence 000 012222345555554443111 112234566666666666 332
Q ss_pred ccCcc----cccCc---------cCCcEEEeecCCCce-EecCCCCccccCCCccceeeccccccccccc---ccccCCC
Q 039808 152 SLSDF----GVRSI---------NGLKFCIISECPKIE-TVVDGKELTTVIFPSLENLSIHHLWNLTHIC---EGSVPNG 214 (358)
Q Consensus 152 ~l~~~----~l~~l---------~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~ 214 (358)
..... .+..+ ++|++|++++|.... .++.. ...+..+++|++|.++++.- +... ..+....
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLA 213 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhh
Confidence 21110 12223 666667666664221 11000 00123455666666666532 2100 0011233
Q ss_pred cCccccEEeEecCCCcc-----ccCchhhhccCCCccEEEEecCCcccccccccccccccc--ccCCCcceecccccccc
Q 039808 215 SFARLRILSVHACPKLK-----FVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC--TALPRLKKLTLHYLPGL 287 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~-----~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~--~~l~~L~~L~l~~c~~L 287 (358)
.+++|++|++++|. ++ .+ +..+..+++|+.|++++|. +...... .....+ +.+++|+.|++++| .+
T Consensus 214 ~~~~L~~L~Ls~n~-l~~~g~~~l--~~~l~~~~~L~~L~L~~n~-i~~~~~~--~l~~~l~~~~~~~L~~L~L~~n-~i 286 (386)
T 2ca6_A 214 YCQELKVLDLQDNT-FTHLGSSAL--AIALKSWPNLRELGLNDCL-LSARGAA--AVVDAFSKLENIGLQTLRLQYN-EI 286 (386)
T ss_dssp GCTTCCEEECCSSC-CHHHHHHHH--HHHGGGCTTCCEEECTTCC-CCHHHHH--HHHHHHHTCSSCCCCEEECCSS-CC
T ss_pred cCCCccEEECcCCC-CCcHHHHHH--HHHHccCCCcCEEECCCCC-CchhhHH--HHHHHHhhccCCCeEEEECcCC-cC
Confidence 56677777777664 32 11 1234567777777777764 2221000 000112 33677777777666 34
Q ss_pred cc-----ccCC---CCCCccEEeeeCCc
Q 039808 288 VT-----IWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 288 ~~-----~~~~---~~~~L~~L~i~~C~ 307 (358)
+. ++.. .+++|++|++++|+
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 44 4333 46777777777764
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=4.1e-10 Score=94.77 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=109.5
Q ss_pred ccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808 112 DYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF 189 (358)
Q Consensus 112 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 189 (358)
..+.+++.|.+.++. .++ ....+++|+.|++.++ .+..++ .+..+++|++|++++|......+.. ...+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPN----LSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCC----CTTC
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChh----hcCC
Confidence 444578888887764 333 3556889999999998 666665 4888999999999998543323233 5678
Q ss_pred CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808 190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG 269 (358)
Q Consensus 190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 269 (358)
++|++|.++++.-.... +...+.+++|++|++++|..++.+ +.+..+++|+.|++++|. +..++ .
T Consensus 112 ~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~-i~~~~--------~ 176 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSI---LTKINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDG-VHDYR--------G 176 (197)
T ss_dssp TTCCEEECCSSBCBGGG---HHHHTTCSSCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBC-CCCCT--------T
T ss_pred CCCCEEEecCCccCcHh---HHHHhhCCCCCEEEccCCCCcccc---HhhcCCCCCCEEECCCCC-CcChH--------H
Confidence 99999999987543322 222457899999999998767766 246889999999999874 44443 4
Q ss_pred cccCCCcceeccccc
Q 039808 270 CTALPRLKKLTLHYL 284 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c 284 (358)
...+++|+.|++++.
T Consensus 177 l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEEECBC
T ss_pred hccCCCCCEEEeeCc
Confidence 678999999999765
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=9.5e-10 Score=98.46 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=125.9
Q ss_pred hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808 134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN 213 (358)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 213 (358)
..+++++.|++.++ .+..++ .++.+++|++|++++|. +..+.. ...+++|++|.++++. ++.+. ..
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~--~~~~l~~L~~L~L~~n~-l~~~~~-----l~~l~~L~~L~l~~n~-l~~~~----~l 108 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNK-LTDIKP-----LANLKNLGWLFLDENK-VKDLS----SL 108 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSC-CCCGG----GG
T ss_pred hhcCcccEEEccCC-CcccCh--hHhcCCCCCEEEccCCc-cCCCcc-----cccCCCCCEEECCCCc-CCCCh----hh
Confidence 45889999999998 777776 48899999999999984 333321 5678999999998864 44431 25
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
+.+++|++|++++| +++.+ +.+..+++|+.|+++++ .+..+. .+..+++|+.|+++++ .++.++.-
T Consensus 109 ~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~--------~l~~l~~L~~L~L~~N-~l~~~~~l 174 (291)
T 1h6t_A 109 KDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNN-KITDIT--------VLSRLTKLDTLSLEDN-QISDIVPL 174 (291)
T ss_dssp TTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSS-CCCCCGGG
T ss_pred ccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCC-cCCcch--------hhccCCCCCEEEccCC-ccccchhh
Confidence 67899999999997 46655 34678999999999987 444443 4778999999999887 67666545
Q ss_pred -CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808 294 -AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK 326 (358)
Q Consensus 294 -~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~ 326 (358)
.+++|+.|++++| .++.+|. +..+++|+.+.
T Consensus 175 ~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 175 AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLE 206 (291)
T ss_dssp TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEE
T ss_pred cCCCccCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 8999999999998 5888875 56677777664
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=7.5e-11 Score=109.90 Aligned_cols=235 Identities=13% Similarity=0.050 Sum_probs=130.7
Q ss_pred cccceeccCCCCccCCc-------hhhcCccccEEEeeecCCCcceec----ccchhhhhhcCCCCCceEEEEccCchh-
Q 039808 4 SCNVEYVKMPPQLISSG-------IISRLHALKTLSIVVYPGDKRWYK----DVKSVVLEVCNLTELSSLCFHFPEIKL- 71 (358)
Q Consensus 4 l~~L~~l~L~~~~ip~~-------~i~~L~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~l~~L~~L~~~~~~l~~- 71 (358)
+++|++|+|+...+... .+.++++|++|+++++ ...++.. ....+...+..+++|++|++..+.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46799999998444321 2568999999999983 2222221 112234456899999999997776654
Q ss_pred ----HHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCC---hHHHH---hhc-----
Q 039808 72 ----LELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENI---PDAVL---QIL----- 136 (358)
Q Consensus 72 ----l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~---~~l----- 136 (358)
++..+. .++ +|+.|.+.++.-. +..+. ..+
T Consensus 110 ~~~~l~~~l~-----~~~------------------------------~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 110 AQEPLIDFLS-----KHT------------------------------PLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp THHHHHHHHH-----HCT------------------------------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hCC------------------------------CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 443333 223 4455555444310 01111 112
Q ss_pred ----cCccEEEeccCCCCC--ccCcc--cccCccCCcEEEeecCCCceE----ecCCCCccccCCCccceeeccccccc-
Q 039808 137 ----ACCTAFYLDNHLHIN--SLSDF--GVRSINGLKFCIISECPKIET----VVDGKELTTVIFPSLENLSIHHLWNL- 203 (358)
Q Consensus 137 ----~~L~~L~l~~~~~~~--~l~~~--~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l- 203 (358)
++|+.|++.++ .+. .++.. .+..+++|++|++++|..... +... .+..+++|++|.++++.-.
T Consensus 155 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~---~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 155 AKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE---GLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT---TGGGCTTCCEEECCSSCCHH
T ss_pred cccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH---HhhcCCCccEEECcCCCCCc
Confidence 67777777776 443 22211 355677777887777732210 1110 1445677777777776531
Q ss_pred ---ccccccccCCCcCccccEEeEecCCCccccCch---hhh--ccCCCccEEEEecCCccc----ccccccccccccc-
Q 039808 204 ---THICEGSVPNGSFARLRILSVHACPKLKFVFSS---FMI--HFMSNLEDLTVEDCPAIE----EIISEGEIIDSGC- 270 (358)
Q Consensus 204 ---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~l--~~l~~L~~L~i~~c~~l~----~i~~~~~~~~~~~- 270 (358)
..++ .....+++|++|++++|. ++..... ..+ +.+++|+.|++++|.--. .++ ...
T Consensus 231 ~g~~~l~---~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-------~~l~ 299 (386)
T 2ca6_A 231 LGSSALA---IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-------TVID 299 (386)
T ss_dssp HHHHHHH---HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-------HHHH
T ss_pred HHHHHHH---HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-------HHHH
Confidence 2221 123456788888888775 4332111 122 237888888888874322 133 122
Q ss_pred ccCCCcceeccccccccccc
Q 039808 271 TALPRLKKLTLHYLPGLVTI 290 (358)
Q Consensus 271 ~~l~~L~~L~l~~c~~L~~~ 290 (358)
..+++|+.|++++++ ++..
T Consensus 300 ~~l~~L~~L~l~~N~-l~~~ 318 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR-FSEE 318 (386)
T ss_dssp HHCTTCCEEECTTSB-SCTT
T ss_pred hcCCCceEEEccCCc-CCcc
Confidence 457888888887763 4433
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=8.8e-10 Score=108.52 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=103.3
Q ss_pred cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccC
Q 039808 111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVI 188 (358)
Q Consensus 111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 188 (358)
...+..|+.|.+.++. .++ ....+++|+.|++.++ .+..++. +..+++|+.|++++|. +..++ .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-----~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENK-IKDLS-----SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCT-----TSTT
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCC-CCCCh-----hhcc
Confidence 3444456666665543 222 2345777777777777 5655553 6777778888777763 33331 1456
Q ss_pred CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccc
Q 039808 189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDS 268 (358)
Q Consensus 189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 268 (358)
+++|+.|.++++. +..+ ...+.+++|+.|++++| .+..+ ..++.+++|+.|++++| .+..++
T Consensus 108 l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~-------- 169 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV-------- 169 (605)
T ss_dssp CTTCCEEECTTSC-CCCC----GGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCG--------
T ss_pred CCCCCEEEecCCC-CCCC----ccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCch--------
Confidence 7777777777754 2332 12446677888888776 34444 34567778888888776 343333
Q ss_pred ccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808 269 GCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP 307 (358)
Q Consensus 269 ~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~ 307 (358)
.+..+++|+.|++++| .++.++.- .+++|+.|++++|+
T Consensus 170 ~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred hhccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 2567777888888766 56665433 67788888887764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=1.7e-09 Score=106.53 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=124.9
Q ss_pred HhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808 133 LQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP 212 (358)
Q Consensus 133 ~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 212 (358)
...+.+|+.|.+.++ .+..++ .++.+++|+.|+|++|. +..++. +..+++|+.|.++++. +..+ ..
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l----~~ 104 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNK-LTDIKP-----LTNLKNLGWLFLDENK-IKDL----SS 104 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCT--TGGGCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSSC-CCCC----TT
T ss_pred hhcCCCCCEEECcCC-CCCCCh--HHccCCCCCEEEeeCCC-CCCChh-----hccCCCCCEEECcCCC-CCCC----hh
Confidence 345889999999988 777776 48899999999999984 333321 5678999999999874 4443 23
Q ss_pred CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808 213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS 292 (358)
Q Consensus 213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 292 (358)
.+.+++|+.|++++|. +..+ +.+..+++|+.|++++| .+..+. .+..+++|+.|++++| .++.++.
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N-~l~~l~--------~l~~l~~L~~L~Ls~N-~l~~~~~ 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNN-KITDIT--------VLSRLTKLDTLSLEDN-QISDIVP 170 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSS-CCCCCG--------GGGSCTTCSEEECCSS-CCCCCGG
T ss_pred hccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCC-ccCCch--------hhcccCCCCEEECcCC-cCCCchh
Confidence 5678999999999974 5554 34678999999999987 444433 4778999999999887 5666544
Q ss_pred C-CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808 293 S-AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK 326 (358)
Q Consensus 293 ~-~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~ 326 (358)
- .+++|+.|++++| .+..+|. +..+++|+.+.
T Consensus 171 l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~ 203 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLE 203 (605)
T ss_dssp GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEE
T ss_pred hccCCCCCEEECcCC-CCCCChH-HccCCCCCEEE
Confidence 5 8999999999998 4777753 45566776664
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.95 E-value=2.1e-08 Score=87.55 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=121.6
Q ss_pred ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCcc
Q 039808 139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFAR 218 (358)
Q Consensus 139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 218 (358)
.+.+++.+. .+..++.. + .++++.|++++|.. ..+... ....+++|++|+++++. ++.+. +...+.+++
T Consensus 16 ~~~l~~~~~-~l~~~p~~-~--~~~l~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~ 84 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSG-I--PADTEKLDLQSTGL-ATLSDA---TFRGLTKLTWLNLDYNQ-LQTLS--AGVFDDLTE 84 (251)
T ss_dssp GTEEECTTC-CCSSCCSC-C--CTTCCEEECTTSCC-CCCCTT---TTTTCTTCCEEECTTSC-CCCCC--TTTTTTCTT
T ss_pred CeEEecCCC-CccccCCC-C--CCCCCEEEccCCCc-CccCHh---HhcCcccCCEEECCCCc-CCccC--HhHhccCCc
Confidence 455666655 66666642 2 36899999998854 333232 25678999999999864 44332 222457899
Q ss_pred ccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC
Q 039808 219 LRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW 295 (358)
Q Consensus 219 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~ 295 (358)
|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. .+
T Consensus 85 L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 154 (251)
T 3m19_A 85 LGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPS------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKL 154 (251)
T ss_dssp CCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcCh------hHhccCCcccEEECcCC-cCCccCHHHcCcC
Confidence 999999987 4665533 45678999999999987 5555541 23567899999999877 78888875 78
Q ss_pred CCccEEeeeCCcCCCccCC-CCCCCCCeeEEEec
Q 039808 296 PSLEYVSFYDCPRLKNIGL-GSNLKHSVMEIKAE 328 (358)
Q Consensus 296 ~~L~~L~i~~C~~L~~lP~-~~~~~~~L~~~~~~ 328 (358)
++|++|+++++ .++.+|. .+..+++|+.+...
T Consensus 155 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 99999999998 5778876 45678899988653
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.93 E-value=8.1e-09 Score=90.97 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=70.0
Q ss_pred hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808 135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG 214 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 214 (358)
.+++++.|++.++ .+..++ .++.+++|++|++++|. +..++. ...+++|++|+++++. ++.+.. ..
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~-i~~~~~-----l~~l~~L~~L~L~~N~-l~~l~~----~~ 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQ-ISDLSP-----LKDLTKLEELSVNRNR-LKNLNG----IP 104 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG-----GTTCSSCCEEECCSSC-CSCCTT----CC
T ss_pred hcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCc-cCCChh-----hccCCCCCEEECCCCc-cCCcCc----cc
Confidence 3455555555555 444444 25555556666665552 222211 3345555555555542 222211 11
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
. ++|++|++++| .++.+ +.+..+++|+.|+++++ .+..++ .+..+++|+.|+++++ .++.+..-
T Consensus 105 ~-~~L~~L~L~~N-~l~~~---~~l~~l~~L~~L~Ls~N-~i~~~~--------~l~~l~~L~~L~L~~N-~i~~~~~l~ 169 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDT---DSLIHLKNLEILSIRNN-KLKSIV--------MLGFLSKLEVLDLHGN-EITNTGGLT 169 (263)
T ss_dssp C-SSCCEEECCSS-CCSBS---GGGTTCTTCCEEECTTS-CCCBCG--------GGGGCTTCCEEECTTS-CCCBCTTST
T ss_pred c-CcccEEEccCC-ccCCC---hhhcCcccccEEECCCC-cCCCCh--------HHccCCCCCEEECCCC-cCcchHHhc
Confidence 1 55666666655 34433 12455666666666554 233332 3445566666666554 44444222
Q ss_pred CCCCccEEeeeCCc
Q 039808 294 AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 ~~~~L~~L~i~~C~ 307 (358)
.+++|+.|++++++
T Consensus 170 ~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 170 RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCCCCEEEEEEEE
T ss_pred cCCCCCEEeCCCCc
Confidence 55666666666653
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=7.3e-09 Score=87.71 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=87.2
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
.++++.|++.++ .+..++...++++++|++|++++| .+..++... ...+++|++|+++++. ++.+. +...+.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV---FNKLTSLTYLNLSTNQ-LQSLP--NGVFDK 98 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCCC--TTTTTT
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhh---cCCCCCcCEEECCCCc-CCccC--HhHhcC
Confidence 345666666666 555554434566777777777665 333332221 3445667777666642 22221 111245
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCC
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAW 295 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 295 (358)
+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|++++++-.. .+
T Consensus 99 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N~~~~-----~~ 164 (208)
T 2o6s_A 99 LTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPD------GVFDRLTSLQYIWLHDNPWDC-----TC 164 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTCTTCCEEECCSCCBCC-----CT
T ss_pred ccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCC-ccceeCH------HHhccCCCccEEEecCCCeec-----CC
Confidence 667777777665 3444422 23456677777777765 3333331 124556677777776653111 35
Q ss_pred CCccEEeeeCCcCCCccCCCCCC
Q 039808 296 PSLEYVSFYDCPRLKNIGLGSNL 318 (358)
Q Consensus 296 ~~L~~L~i~~C~~L~~lP~~~~~ 318 (358)
++|+.|+++++..-..+|..++.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCHHHHHHHHHhCCceeeccCcc
Confidence 66666666666555566655543
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=8.2e-09 Score=84.25 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=55.5
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC-
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS- 292 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~- 292 (358)
+.+++|++|++++|. +...++ ..+..+++|+.|++++| .+..++.. ..+..+++|+.|+++++ .++.++.
T Consensus 68 ~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~l~~L~~L~l~~N-~l~~~~~~ 138 (168)
T 2ell_A 68 PKLPKLKKLELSENR-IFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTL-----EPLKKLECLKSLDLFNC-EVTNLNDY 138 (168)
T ss_dssp CCCSSCCEEEEESCC-CCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGG-----GGGSSCSCCCEEECCSS-GGGTSTTH
T ss_pred ccCCCCCEEECcCCc-CchHHH-HHHhhCCCCCEEeccCC-ccCcchhH-----HHHhcCCCCCEEEeeCC-cCcchHHH
Confidence 345667777776653 333222 34456777777777776 44443210 13556777888887766 4555655
Q ss_pred ---C--CCCCccEEeeeCCcCCCccCCC
Q 039808 293 ---S--AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 293 ---~--~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
. .+++|++|++++|. +..+|..
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 139 RESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred HHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 2 67788888888774 5666644
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.86 E-value=2.6e-08 Score=85.77 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=60.4
Q ss_pred cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808 187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII 266 (358)
Q Consensus 187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 266 (358)
..+++|++|++++.. ++.+. +..++.+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++
T Consensus 61 ~~l~~L~~L~L~~N~-l~~i~--~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~lp------ 128 (229)
T 3e6j_A 61 DSLINLKELYLGSNQ-LGALP--VGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCN-KLTELP------ 128 (229)
T ss_dssp TTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCSCC------
T ss_pred hCccCCcEEECCCCC-CCCcC--hhhcccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCC-cccccC------
Confidence 344555555555432 22221 111234566666666665 4444422 33456777777777765 444554
Q ss_pred ccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 267 DSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
..+..+++|+.|+++++ .++.++.. .+++|+.|++.+++
T Consensus 129 -~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 129 -RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp -TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred -cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 34566777777777654 56666654 56777777777764
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=1.9e-08 Score=82.00 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=98.0
Q ss_pred hccCccEEEeccCCCCC--ccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808 135 ILACCTAFYLDNHLHIN--SLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP 212 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~--~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 212 (358)
..++++.|++.++ .+. .++. .+..+++|++|++++|. +..+ .. ...+++|++|+++++.-...+ +..
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~-~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~N~l~~~~---~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEG-LTAEFVNLEFLSLINVG-LISV-SN----LPKLPKLKKLELSENRIFGGL---DML 90 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSS-CCGGGGGCCEEEEESSC-CCCC-SS----CCCCSSCCEEEEESCCCCSCC---CHH
T ss_pred CcccCCEEECCCC-CCChhhHHH-HHHhCCCCCEEeCcCCC-CCCh-hh----hccCCCCCEEECcCCcCchHH---HHH
Confidence 3578999999998 665 6665 37889999999999985 4444 22 567899999999887543322 222
Q ss_pred CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccccc
Q 039808 213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW 291 (358)
Q Consensus 213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 291 (358)
.+.+++|++|++++| .++.++....+..+++|+.|+++++ .+..++.. ....+..+|+|+.|++.+|. ++.++
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDY---RESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTH---HHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHH---HHHHHHhCccCcEecCCCCC-hhhcc
Confidence 335789999999988 5666533345678999999999987 34443310 00136678999999998874 44444
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=2.2e-09 Score=99.10 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=29.2
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCC-CCceEEEEccCchh
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLT-ELSSLCFHFPEIKL 71 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~~~~~~l~~ 71 (358)
++...+|++|++++ +.+..... ......+.+++ +|++|++..+.+..
T Consensus 18 ~~~~~~L~~L~Ls~-n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 18 TSIPHGVTSLDLSL-NNLYSIST--VELIQAFANTPASVTSLNLSGNSLGF 65 (362)
T ss_dssp HTSCTTCCEEECTT-SCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred HhCCCCceEEEccC-CCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCH
Confidence 44455689999888 33332111 12235677888 89998887776654
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=1.1e-09 Score=101.22 Aligned_cols=243 Identities=9% Similarity=-0.019 Sum_probs=112.9
Q ss_pred cccceeccCCCCc---cCC----chhhcCc-cccEEEeeecCCCcceecccchhhhhhcCC-CCCceEEEEccCchhHHH
Q 039808 4 SCNVEYVKMPPQL---ISS----GIISRLH-ALKTLSIVVYPGDKRWYKDVKSVVLEVCNL-TELSSLCFHFPEIKLLEL 74 (358)
Q Consensus 4 l~~L~~l~L~~~~---ip~----~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~~~~~~l~~l~~ 74 (358)
..+|++|+|+... .+. ..+.+++ +|++|++++ +.+.... .......+... ++|++|++..+.+.....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKN--SDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSC--HHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHH--HHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3457888888733 333 4456677 788888887 3332110 01112223333 778888876666543221
Q ss_pred -HHhhhccccccccceEEEEEeCccccccccCCcccccccc-cCCceEEeeCCC--CChH-HHHhh----ccCccEEEec
Q 039808 75 -FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYN-KQGKCLRFINGE--NIPD-AVLQI----LACCTAFYLD 145 (358)
Q Consensus 75 -~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~--~~~~-~~~~~----l~~L~~L~l~ 145 (358)
.+.. .+... ..|+.|.+.++. .... .+... .++|+.|++.
T Consensus 98 ~~l~~-------------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 98 DELVK-------------------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp HHHHH-------------------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred HHHHH-------------------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 1110 11111 367777777664 2222 22222 2477777777
Q ss_pred cCCCCCccCcc----cccCcc-CCcEEEeecCCCceEecCCCCccccCC-Cccceeeccccccccccccc--ccCCCc-C
Q 039808 146 NHLHINSLSDF----GVRSIN-GLKFCIISECPKIETVVDGKELTTVIF-PSLENLSIHHLWNLTHICEG--SVPNGS-F 216 (358)
Q Consensus 146 ~~~~~~~l~~~----~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~--~~~~~~-~ 216 (358)
++ .+...... .+..++ +|++|++++|......+..-...+... ++|++|+++++.- +..... +..... .
T Consensus 147 ~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 147 GN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIP 224 (362)
T ss_dssp TS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHHSC
T ss_pred CC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHHHHHhcCC
Confidence 76 44421111 234444 777777777632221100000012233 3777777766542 220000 000111 2
Q ss_pred ccccEEeEecCCCccccCch---hhhccCCCccEEEEecCCcccccccc-ccccccccccCCCcceeccccc
Q 039808 217 ARLRILSVHACPKLKFVFSS---FMIHFMSNLEDLTVEDCPAIEEIISE-GEIIDSGCTALPRLKKLTLHYL 284 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~---~~l~~l~~L~~L~i~~c~~l~~i~~~-~~~~~~~~~~l~~L~~L~l~~c 284 (358)
++|++|++++| .++..+.. ..+..+++|+.|++++|. +..+... -.........+++|+.|+++++
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 46777777765 34443221 223456677777777663 1110000 0000023445566666666554
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.77 E-value=1.1e-07 Score=81.31 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=38.5
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
.+++|++|+++++ .++.+++ ..+..+++|+.|+++++ .+..++ ...+..+++|+.|+++++ .++.++..
T Consensus 78 ~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 147 (220)
T 2v9t_B 78 GLRSLNSLVLYGN-KITELPK-SLFEGLFSLQLLLLNAN-KINCLR------VDAFQDLHNLNLLSLYDN-KLQTIAKGT 147 (220)
T ss_dssp TCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC------TTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCcCCCEEECCCC-cCCccCH-hHccCCCCCCEEECCCC-CCCEeC------HHHcCCCCCCCEEECCCC-cCCEECHHH
Confidence 3445555555443 2333322 23345555555555554 232222 023445555666666544 45544443
Q ss_pred --CCCCccEEeeeCC
Q 039808 294 --AWPSLEYVSFYDC 306 (358)
Q Consensus 294 --~~~~L~~L~i~~C 306 (358)
.+++|+.|+++++
T Consensus 148 ~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred HhCCCCCCEEEeCCC
Confidence 4556666666554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.75 E-value=1.8e-07 Score=79.93 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=47.5
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
+.+++|++|+++++ .++.+.+ ..+..+++|+.|+++++. +..++ ...+..+++|+.|+++++ .++.++..
T Consensus 78 ~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~ 147 (220)
T 2v70_A 78 EGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNR-ITCVG------NDSFIGLSSVRLLSLYDN-QITTVAPG 147 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSC-CCCBC------TTSSTTCTTCSEEECTTS-CCCCBCTT
T ss_pred CCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCc-CCeEC------HhHcCCCccCCEEECCCC-cCCEECHH
Confidence 34556666666654 2444322 334566777777776653 33332 123556677777777654 56655433
Q ss_pred ---CCCCccEEeeeCCc
Q 039808 294 ---AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 ---~~~~L~~L~i~~C~ 307 (358)
.+++|+.|++++++
T Consensus 148 ~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HhcCCCCCCEEEecCcC
Confidence 56777777777654
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.74 E-value=1.8e-07 Score=79.06 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=99.6
Q ss_pred CCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808 149 HINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP 228 (358)
Q Consensus 149 ~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 228 (358)
++..++ .+-.++|++|+++++. +..++... ...+++|++|++++. .++.+. +..++.+++|++|+++++
T Consensus 18 ~l~~~p---~~~~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 18 GRTSVP---TGIPAQTTYLDLETNS-LKSLPNGV---FDELTSLTQLYLGGN-KLQSLP--NGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp CCSSCC---SCCCTTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-
T ss_pred CccCCC---CCCCCCCcEEEcCCCc-cCcCChhh---hcccccCcEEECCCC-ccCccC--hhhcCCCCCcCEEECCCC-
Confidence 444444 3445699999999984 44443321 457899999999886 344432 112356899999999987
Q ss_pred CccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeC
Q 039808 229 KLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYD 305 (358)
Q Consensus 229 ~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~ 305 (358)
.++.+++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. .+++|++|++++
T Consensus 87 ~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 87 QLQSLPN-GVFDKLTQLKELALNTN-QLQSLPD------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCccCH-hHhcCccCCCEEEcCCC-cCcccCH------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecC
Confidence 4665533 35678999999999986 4555441 23577899999999876 67777765 689999999999
Q ss_pred CcCC
Q 039808 306 CPRL 309 (358)
Q Consensus 306 C~~L 309 (358)
++-.
T Consensus 158 N~~~ 161 (208)
T 2o6s_A 158 NPWD 161 (208)
T ss_dssp CCBC
T ss_pred CCee
Confidence 8543
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=7.1e-08 Score=84.86 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=109.7
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
.+..+.+++.|.+.++. .++ ....+++|+.|++.++ .+..++. +.++++|++|++++|. +..++.. .
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~-----~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGI-----P 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTC-----C
T ss_pred chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCcc-----c
Confidence 44556688888887764 333 3456899999999998 7777764 8899999999999984 4444322 2
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID 267 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 267 (358)
. ++|++|+++++. ++.+ ...+.+++|+.|+++++ +++.+ +.++.+++|+.|+++++ .+..+.
T Consensus 105 ~-~~L~~L~L~~N~-l~~~----~~l~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~L~~L~L~~N-~i~~~~------- 166 (263)
T 1xeu_A 105 S-ACLSRLFLDNNE-LRDT----DSLIHLKNLEILSIRNN-KLKSI---VMLGFLSKLEVLDLHGN-EITNTG------- 166 (263)
T ss_dssp C-SSCCEEECCSSC-CSBS----GGGTTCTTCCEEECTTS-CCCBC---GGGGGCTTCCEEECTTS-CCCBCT-------
T ss_pred c-CcccEEEccCCc-cCCC----hhhcCcccccEEECCCC-cCCCC---hHHccCCCCCEEECCCC-cCcchH-------
Confidence 2 899999998873 4443 13557899999999987 46665 24678999999999987 344332
Q ss_pred cccccCCCcceecccccccccccc
Q 039808 268 SGCTALPRLKKLTLHYLPGLVTIW 291 (358)
Q Consensus 268 ~~~~~l~~L~~L~l~~c~~L~~~~ 291 (358)
.+..+++|+.|++++++ +...+
T Consensus 167 -~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 167 -GLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp -TSTTCCCCCEEEEEEEE-EECCC
T ss_pred -HhccCCCCCEEeCCCCc-ccCCc
Confidence 47789999999998763 44443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.69 E-value=5.4e-08 Score=89.70 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=63.0
Q ss_pred CCceEEeeCCC--CChHHHHh-hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 116 QGKCLRFINGE--NIPDAVLQ-ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
.++.|.+.++. .++..... .+++|+.|++.++ .+..++...+.++++|++|++++|. +..++... ...+++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL---FSDLQAL 114 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH---hCCCcCC
Confidence 45566665543 22222222 4566666666666 5555554445666666666666653 33333221 3445666
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh---ccCCCccEEEEecC
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI---HFMSNLEDLTVEDC 253 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l---~~l~~L~~L~i~~c 253 (358)
+.|++++.. +..+. +..+..+++|++|+++++ +++.+++ ..+ ..+++|+.|+++++
T Consensus 115 ~~L~L~~N~-i~~~~--~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 115 EVLLLYNNH-IVVVD--RNAFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECCSS
T ss_pred CEEECCCCc-ccEEC--HHHhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECCCC
Confidence 666665543 22221 122344566666666654 3444322 222 34566666666654
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=2.5e-08 Score=79.61 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=17.6
Q ss_pred cCccEEEeccCCCCC--ccCcccccCccCCcEEEeecC
Q 039808 137 ACCTAFYLDNHLHIN--SLSDFGVRSINGLKFCIISEC 172 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~--~l~~~~l~~l~~L~~L~l~~~ 172 (358)
++++.|++.++ .+. .++. .++.+++|++|++++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n 52 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINV 52 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTS
T ss_pred ccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCC
Confidence 44555555555 333 3333 3455566666666555
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.66 E-value=2e-07 Score=79.70 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=87.0
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF 216 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 216 (358)
++++.|++.++ .+..++...+..+++|++|++++|. +..+.... +..+++|++|++++.. ++.++. ..++.+
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~--~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA---FQGLRSLNSLVLYGNK-ITELPK--SLFEGL 103 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTT---TTTCSSCCEEECCSSC-CCCCCT--TTTTTC
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHH---hhCCcCCCEEECCCCc-CCccCH--hHccCC
Confidence 56777777777 6666665567788888888888774 44442221 5567888888887753 333321 123467
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP 285 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~ 285 (358)
++|++|+++++ +++.+.+ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|++.+.+
T Consensus 104 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAK------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCC-cCCEECH------HHHhCCCCCCEEEeCCCC
Confidence 88888888886 4555544 34577888999998886 4444431 235668888888887653
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=7.2e-08 Score=76.88 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=90.0
Q ss_pred cCccCCcEEEeecCCCc-eEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808 159 RSINGLKFCIISECPKI-ETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF 237 (358)
Q Consensus 159 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 237 (358)
...++|++|++++|... ..++.. ...+++|+.|+++++ .++.+ ...+.+++|++|++++|. ++... +.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~Ls~n~-i~~~~-~~ 82 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINV-GLTSI----ANLPKLNKLKKLELSDNR-VSGGL-EV 82 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTS-CCCCC----TTCCCCTTCCEEECCSSC-CCSCT-HH
T ss_pred CCCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCC-CCCCc----hhhhcCCCCCEEECCCCc-ccchH-HH
Confidence 45578999999998543 244333 467889999999887 44443 235578899999998875 44432 34
Q ss_pred hhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC---C---CCCCccEEeeeC
Q 039808 238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS---S---AWPSLEYVSFYD 305 (358)
Q Consensus 238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~---~---~~~~L~~L~i~~ 305 (358)
.++.+++|+.|+++++. +..++. ...+..+++|+.|+++++ .++.++. . .+++|+.|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLST-----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHH-----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCc-CCChHH-----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 56678999999998874 444320 024678889999999887 5777765 2 688888887753
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=2.8e-07 Score=89.90 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=95.6
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
++++.|.+.++. .++ ..+++|+.|++.++ .+..++. +.+ +|++|++++|. +..++. .+++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N~-l~~lp~-------~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNNQ-LTMLPE-------LPALL 142 (571)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSSC-CSCCCC-------CCTTC
T ss_pred CCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCCc-CCCCCC-------cCccc
Confidence 467777776654 333 34677777777777 5655654 333 77777777763 332321 45777
Q ss_pred ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808 193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA 272 (358)
Q Consensus 193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 272 (358)
+.|+++++. ++.++. .+++|++|++++|. ++.++. +. ++|+.|+++++ .+..++ . +
T Consensus 143 ~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~-L~~lp~---l~--~~L~~L~Ls~N-~L~~lp-------~-~-- 198 (571)
T 3cvr_A 143 EYINADNNQ-LTMLPE------LPTSLEVLSVRNNQ-LTFLPE---LP--ESLEALDVSTN-LLESLP-------A-V-- 198 (571)
T ss_dssp CEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSCCCC---CC--TTCCEEECCSS-CCSSCC-------C-C--
T ss_pred cEEeCCCCc-cCcCCC------cCCCcCEEECCCCC-CCCcch---hh--CCCCEEECcCC-CCCchh-------h-H--
Confidence 777777653 333321 35677888877763 554422 22 77788887775 455554 1 1
Q ss_pred CCCc-------ceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC
Q 039808 273 LPRL-------KKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 273 l~~L-------~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
..+| +.|+++++ .++.+|.. .+++|+.|++++++--...|..
T Consensus 199 ~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 199 PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 1145 77777665 67777665 6778888888777644444443
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=1.8e-07 Score=84.93 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=58.0
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcc-eeccccccccccccCC-
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLK-KLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~~~- 293 (358)
+++|+.+++.++ +++.++. ..+.++++|+.+++.+. ++.+.. ..+.++++|+ .+.+.+ .++.++..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT------TTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH------HHhhCChhccEEEEEcc--cceEEchhh
Confidence 456666666653 2454433 34566777777777652 554441 2455666676 777755 56666655
Q ss_pred --CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEE
Q 039808 294 --AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIK 326 (358)
Q Consensus 294 --~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~ 326 (358)
++++|+.+++.+. +++.++.. ...+++|+.++
T Consensus 293 F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 6777777776553 46666654 34566666664
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.62 E-value=1.5e-07 Score=91.85 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=114.3
Q ss_pred CCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHh
Q 039808 57 TELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQ 134 (358)
Q Consensus 57 ~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~ 134 (358)
.+|+.|++..+.+..+|.. .+++|+.+.+. .+ .+..+| ..+.+|+.|.+.++. +++. +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-------l~~~L~~L~Ls---~N--~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~-l-- 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-------LPPQITVLEIT---QN--ALISLP-----ELPASLEYLDACDNRLSTLPE-L-- 118 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-------CCTTCSEEECC---SS--CCSCCC-----CCCTTCCEEECCSSCCSCCCC-C--
T ss_pred CCccEEEeCCCCCCccCHh-------HcCCCCEEECc---CC--CCcccc-----cccCCCCEEEccCCCCCCcch-h--
Confidence 3888888877777666531 23567777652 11 123344 234688888888764 4444 2
Q ss_pred hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808 135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG 214 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 214 (358)
..+|+.|++.++ .+..++. .+++|+.|++++|. +..++. .+++|++|+++++. ++.++. ++
T Consensus 119 -~~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~-L~~lp~----l~ 179 (571)
T 3cvr_A 119 -PASLKHLDVDNN-QLTMLPE----LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNNQ-LTFLPE----LP 179 (571)
T ss_dssp -CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-CSCCCC----CC
T ss_pred -hcCCCEEECCCC-cCCCCCC----cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCCC-CCCcch----hh
Confidence 238999999888 6666663 67899999998874 333321 46789999998874 444422 22
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCc-------cEEEEecCCccccccccccccccccccCCCcceeccccccc
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNL-------EDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPG 286 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L-------~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~ 286 (358)
++|+.|+++++ +++.++. +.. +| +.|+++++ .+..++ ..+..+++|+.|++++++-
T Consensus 180 --~~L~~L~Ls~N-~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N-~l~~lp-------~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 --ESLEALDVSTN-LLESLPA---VPV--RNHHSEETEIFFRCREN-RITHIP-------ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp --TTCCEEECCSS-CCSSCCC---CC----------CCEEEECCSS-CCCCCC-------GGGGGSCTTEEEECCSSSC
T ss_pred --CCCCEEECcCC-CCCchhh---HHH--hhhcccccceEEecCCC-cceecC-------HHHhcCCCCCEEEeeCCcC
Confidence 78999999887 4665532 222 56 99999886 566666 3466689999999987743
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=3e-07 Score=79.05 Aligned_cols=132 Identities=19% Similarity=0.158 Sum_probs=85.3
Q ss_pred ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
.++++.|++.++ .+..+....+.++++|++|++++|. +..++... ...+++|+.|++++. .++.+. +..++.
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~---~~~l~~L~~L~Ls~N-~l~~l~--~~~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV---FDSLTQLTVLDLGTN-QLTVLP--SAVFDR 110 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCC--TTTTTT
T ss_pred CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhh---cccCCCcCEEECCCC-cCCccC--hhHhCc
Confidence 367777777777 6666544457778888888887774 44443221 356778888888775 344332 112346
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP 285 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~ 285 (358)
+++|++|+++++ +++.++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|++.+.+
T Consensus 111 l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCN-KLTELP--RGIERLTHLTHLALDQN-QLKSIPH------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSS-CCCSCC--TTGGGCTTCSEEECCSS-CCCCCCT------TTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCC-cccccC--cccccCCCCCEEECCCC-cCCccCH------HHHhCCCCCCEEEeeCCC
Confidence 788888888876 455542 23477888888888876 5555441 235677888888887654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=3.7e-07 Score=82.87 Aligned_cols=103 Identities=17% Similarity=0.020 Sum_probs=60.1
Q ss_pred ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCcccc-EEeEecCCCccccCchhhh
Q 039808 161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLR-ILSVHACPKLKFVFSSFMI 239 (358)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~l 239 (358)
+++|+++++.++ .+..+++.. ...+++|+++.+.+ +++.+.. ..+..+++|+ .+.+.+ .++.+.+ ..+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~a---F~~~~~L~~l~l~~--ni~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~-~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFT---FAQKKYLLKIKLPH--NLKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEF-GAF 293 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTT---TTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEEEECT--TCCEECT-TTT
T ss_pred cCCCeEEECCCC-CcceecHhh---hhCCCCCCEEECCc--ccceehH--HHhhCChhccEEEEEcc--cceEEch-hhh
Confidence 567777777654 355554442 34456677776655 2444422 2233556677 777765 5665544 345
Q ss_pred ccCCCccEEEEecCCccccccccccccccccccCCCcceecc
Q 039808 240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTL 281 (358)
Q Consensus 240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l 281 (358)
.++++|+.+++.. ..++.+.. ..+.++++|+.++.
T Consensus 294 ~~c~~L~~l~l~~-n~i~~I~~------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATG-DKITTLGD------ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECS-SCCCEECT------TTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCC-CccCccch------hhhcCCcchhhhcc
Confidence 6788888888754 34555441 24666778877753
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.58 E-value=5.5e-07 Score=82.88 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=96.4
Q ss_pred ccCccEEEeccCCCCCccCccccc-CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808 136 LACCTAFYLDNHLHINSLSDFGVR-SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG 214 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~~l~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 214 (358)
...++.|++.++ .+..++...+. ++++|++|++++| .+..++... +..+++|++|++++.. ++.+. +..+.
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~~~ 109 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA---FVPVPNLRYLDLSSNH-LHTLD--EFLFS 109 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CCEEC--TTTTT
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhh---ccCCCCCCEEECCCCc-CCcCC--HHHhC
Confidence 456788888887 67777654555 7888888888877 444453322 4567788888887753 44432 11244
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
.+++|++|+++++. +..+.+ ..+..+++|+.|+++++ .+..++... -.....+++|+.|+++++ .++.++..
T Consensus 110 ~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 182 (361)
T 2xot_A 110 DLQALEVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQN-QISRFPVEL---IKDGNKLPKLMLLDLSSN-KLKKLPLTD 182 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCSCCGGG---TC----CTTCCEEECCSS-CCCCCCHHH
T ss_pred CCcCCCEEECCCCc-ccEECH-HHhCCcccCCEEECCCC-cCCeeCHHH---hcCcccCCcCCEEECCCC-CCCccCHHH
Confidence 67788888887763 554433 34567788888888775 444444100 001145778888888665 56666654
Q ss_pred --CCCC--ccEEeeeCCc
Q 039808 294 --AWPS--LEYVSFYDCP 307 (358)
Q Consensus 294 --~~~~--L~~L~i~~C~ 307 (358)
.++. ++.|++.++|
T Consensus 183 ~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHSCHHHHTTEECCSSC
T ss_pred hhhccHhhcceEEecCCC
Confidence 4554 3667777754
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=4.6e-07 Score=77.38 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=84.1
Q ss_pred cCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808 137 ACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS 215 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 215 (358)
..++.|++.++ .+..+.. ..+.++++|++|++++|. +..++... +..+++|++|++++..- +.+. +..++.
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~---~~~l~~L~~L~Ls~N~l-~~~~--~~~~~~ 103 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGA---FEGASGVNEILLTSNRL-ENVQ--HKMFKG 103 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCC-CCCC--GGGGTT
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHH---hCCCCCCCEEECCCCcc-CccC--HhHhcC
Confidence 34567777777 6666532 246778888888887764 44443322 45677888888877543 3321 112446
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP 285 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~ 285 (358)
+++|++|+++++ +++.+.+ ..+..+++|+.|+++++ .+..++ ...+..+++|+.|++++++
T Consensus 104 l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 104 LESLKTLMLRSN-RITCVGN-DSFIGLSSVRLLSLYDN-QITTVA------PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCEEECTTS-CCCCBCT-TSSTTCTTCSEEECTTS-CCCCBC------TTTTTTCTTCCEEECCSCC
T ss_pred CcCCCEEECCCC-cCCeECH-hHcCCCccCCEEECCCC-cCCEEC------HHHhcCCCCCCEEEecCcC
Confidence 788888888876 3555433 34567888888888876 444442 1346678888888887653
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=1.8e-07 Score=76.82 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=36.0
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
.+++|++|+++++ .++.+++ ..+..+++|+.|+++++ .++.++.. ..+..+++|+.|+++++ .+..++..
T Consensus 62 ~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~-----~~l~~l~~L~~L~l~~N-~i~~~~~~~ 132 (176)
T 1a9n_A 62 LLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNN-SLVELGDL-----DPLASLKSLTYLCILRN-PVTNKKHYR 132 (176)
T ss_dssp CCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSC-CCCCGGGG-----GGGGGCTTCCEEECCSS-GGGGSTTHH
T ss_pred cCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCC-cCCcchhh-----HhhhcCCCCCEEEecCC-CCCCcHhHH
Confidence 3445555555544 2333321 22344555555555554 22333210 02344555555555544 23333331
Q ss_pred -----CCCCccEEeeeCC
Q 039808 294 -----AWPSLEYVSFYDC 306 (358)
Q Consensus 294 -----~~~~L~~L~i~~C 306 (358)
.+++|+.|+++++
T Consensus 133 ~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHHHCTTCSEETTEEC
T ss_pred HHHHHHCCccceeCCCcC
Confidence 4555555555544
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=8.8e-09 Score=100.67 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=86.2
Q ss_pred CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808 116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE 193 (358)
Q Consensus 116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 193 (358)
.++.|.+.++. +++. ...+++|+.|++.++ .+..++. .++++++|+.|++++|. +..++ . +..+++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp-~----l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNA-LENVD-G----VANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G----GTTCSSCC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCC-CCCCc-c----cCCCCCCc
Confidence 46777777663 4543 566889999999998 7778876 68999999999999884 44453 2 66789999
Q ss_pred eeecccccccccccccccCCCcCccccEEeEecCCCccccCch--hhhccCCCccEEE
Q 039808 194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS--FMIHFMSNLEDLT 249 (358)
Q Consensus 194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~l~~l~~L~~L~ 249 (358)
.|+++++. ++.+. .+...+.+++|+.|++++++ ++..++. .+...+|+|+.|+
T Consensus 512 ~L~Ls~N~-l~~~~-~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 512 ELLLCNNR-LQQSA-AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSC-CCSSS-TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCC-CCCCC-CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 99998863 33321 02335678999999999874 5544331 2445689999885
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.44 E-value=6.8e-07 Score=73.38 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=29.6
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL 284 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c 284 (358)
.+++|++|+++++. ++.++....+..+++|+.|++++++ +..++.. ....+..+|+|+.|+++++
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~---~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHY---RLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH---HHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH---HHHHHHHCCccceeCCCcC
Confidence 34555555555542 3333221234556666666666542 2222200 0001445666666666554
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=2.7e-05 Score=72.59 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=131.7
Q ss_pred ccccccCCceEEeeCC--CCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFING--ENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
.+..+.+|+.+.+.++ ..++...+. ..+++.+.+.+ .+..+...++.++++|+.+.+.+ ++..+....+ .
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF---~ 246 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF---R 246 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTT---T
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccc---c
Confidence 4555667777777643 234443333 36788888863 57777777889999999999976 4666644432 1
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCCC----ccccCchhhhccCCCccEEEEecCCccccccccc
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPK----LKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEG 263 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~ 263 (358)
. .+|+++.+.+ +++.+.. ..+..+++|+.+.+.+... ...+. ...+.++++|+.+.+.+ .++.+.
T Consensus 247 ~-~~L~~i~lp~--~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~~--~i~~I~--- 315 (401)
T 4fdw_A 247 E-SGITTVKLPN--GVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIPE--SIRILG--- 315 (401)
T ss_dssp T-CCCSEEEEET--TCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCCT--TCCEEC---
T ss_pred c-CCccEEEeCC--CccEECh--hHhhCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeCC--ceEEEh---
Confidence 2 6788888833 4444422 2344678999999976421 11232 24567899999999974 465554
Q ss_pred cccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCC-CCC-CCeeEEEecccccccc
Q 039808 264 EIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGS-NLK-HSVMEIKAEKSWWDDL 335 (358)
Q Consensus 264 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~-~~~-~~L~~~~~~~~~~~~l 335 (358)
...+.++++|+.+.+.. +++.+... ++ +|+.+++.+. .+..++.+. ..+ ..+..++.+....+..
T Consensus 316 ---~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 316 ---QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp ---TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred ---hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHHHh
Confidence 13566778999999954 57777766 67 9999999986 466665553 334 4778888776555544
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.26 E-value=1.6e-06 Score=72.45 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=31.9
Q ss_pred eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh
Q 039808 8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL 71 (358)
Q Consensus 8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~ 71 (358)
++++++. +.+|.++ ..+|++|++++ +.+. .++..+.++++|+.|++..+.++.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~-n~i~-------~ip~~~~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDG-NQFT-------LVPKELSNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCS-SCCC-------SCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCC-CcCc-------hhHHHhhcccCCCEEECCCCcCCE
Confidence 4555554 4567654 35788888887 3332 233466777777777775555543
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.24 E-value=7e-06 Score=67.20 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=45.6
Q ss_pred cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS- 293 (358)
Q Consensus 215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~- 293 (358)
.+++|++|++.++ .++.+++ ..+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++..
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~~~ 119 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLPN------GVFDKLTQLKELALDTN-QLKSVPDGI 119 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccCH------HHhhCCcccCEEECcCC-cceEeCHHH
Confidence 4455666666554 3443322 23455666666666664 3333330 12345666777777555 55655554
Q ss_pred --CCCCccEEeeeCCc
Q 039808 294 --AWPSLEYVSFYDCP 307 (358)
Q Consensus 294 --~~~~L~~L~i~~C~ 307 (358)
.+++|++|++++++
T Consensus 120 ~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCcccCEEEecCCC
Confidence 46677777777664
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.23 E-value=7.3e-06 Score=68.19 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=5.1
Q ss_pred cCccCCcEEEeec
Q 039808 159 RSINGLKFCIISE 171 (358)
Q Consensus 159 ~~l~~L~~L~l~~ 171 (358)
+.+++|++|++++
T Consensus 51 ~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 51 GRLPHLVKLELKR 63 (192)
T ss_dssp GGCTTCCEEECCS
T ss_pred ccCCCCCEEECCC
Confidence 3333444444433
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=6.6e-07 Score=73.07 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=52.2
Q ss_pred ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC----CCccEEEEecCCcccccccccccc
Q 039808 191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM----SNLEDLTVEDCPAIEEIISEGEII 266 (358)
Q Consensus 191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l----~~L~~L~i~~c~~l~~i~~~~~~~ 266 (358)
.|++|++++|. ++...... ...+++|++|++++|..+++..... +..+ ++|++|+|++|..+.+...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl----- 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGI----- 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHH-----
T ss_pred eEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHH-----
Confidence 57777777775 44332222 2356777777777777777642222 2222 3677777777776654210
Q ss_pred ccccccCCCcceeccccccccccc
Q 039808 267 DSGCTALPRLKKLTLHYLPGLVTI 290 (358)
Q Consensus 267 ~~~~~~l~~L~~L~l~~c~~L~~~ 290 (358)
..+..+++|+.|++++|+.+++.
T Consensus 133 -~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred -HHHhcCCCCCEEECCCCCCCCch
Confidence 12345667777777777666653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.21 E-value=7.4e-06 Score=68.27 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=16.9
Q ss_pred cccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808 270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC 306 (358)
Q Consensus 270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C 306 (358)
+..+++|+.|+++++ .++.++.. .+++|+.|++.++
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 344455555555443 34444443 3455555555543
No 132
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=7.5e-07 Score=72.72 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC--cCccccEEeEecCCCccccCchhhhc
Q 039808 163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG--SFARLRILSVHACPKLKFVFSSFMIH 240 (358)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~ 240 (358)
.|++|++++|. +. +.....+..+++|++|++++|..++.......... ..++|++|++++|+++++.+.. .+.
T Consensus 62 ~L~~LDLs~~~-It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH 136 (176)
T ss_dssp CEEEEEEESCC-CC---GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred eEeEEeCcCCC-cc---HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence 57777777764 22 22112244567777777777766655322221111 1247899999999888875443 345
Q ss_pred cCCCccEEEEecCCcccc
Q 039808 241 FMSNLEDLTVEDCPAIEE 258 (358)
Q Consensus 241 ~l~~L~~L~i~~c~~l~~ 258 (358)
.+++|+.|+|++|+.+..
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 788999999999988765
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=4.5e-06 Score=81.49 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=19.2
Q ss_pred hcCCCCCceEEEEccCchhHHHHHhh
Q 039808 53 VCNLTELSSLCFHFPEIKLLELFLQR 78 (358)
Q Consensus 53 l~~l~~L~~L~~~~~~l~~l~~~~~~ 78 (358)
+..+++|+.|+++.+.++.+|..++.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~ 370 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELES 370 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHH
Confidence 35677888888877778888877664
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.11 E-value=2e-06 Score=86.52 Aligned_cols=139 Identities=13% Similarity=0.000 Sum_probs=88.1
Q ss_pred cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808 157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS 236 (358)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 236 (358)
.+..+++|+.|++++|. +..++.. ...+++|++|.++++. ++.+ +..++.+++|++|+++++. ++.+ |
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~~~----~~~l~~L~~L~Ls~N~-l~~l---p~~~~~l~~L~~L~Ls~N~-l~~l-p- 286 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNISAN----IFKYDFLTRLYLNGNS-LTEL---PAEIKNLSNLRVLDLSHNR-LTSL-P- 286 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCCGG----GGGCCSCSCCBCTTSC-CSCC---CGGGGGGTTCCEEECTTSC-CSSC-C-
T ss_pred hhccCCCCcEEECCCCC-CCCCChh----hcCCCCCCEEEeeCCc-Cccc---ChhhhCCCCCCEEeCcCCc-CCcc-C-
Confidence 57788899999998875 3445333 4467889999988863 3444 3335678889999998874 5554 3
Q ss_pred hhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC-CCccEEeeeCCcCCCcc
Q 039808 237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCPRLKNI 312 (358)
Q Consensus 237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~~L~~l 312 (358)
..++.+++|+.|+++++ .+..++ ..++.+++|+.|++++++ ++..+.. .. ..+..++++++..-..+
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~lp-------~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTLP-------WEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCCC-------SSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred hhhcCCCCCCEEECCCC-CCCccC-------hhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 23578889999999887 556666 457788889999997763 4433322 11 11223456665544455
Q ss_pred CCCC
Q 039808 313 GLGS 316 (358)
Q Consensus 313 P~~~ 316 (358)
|..+
T Consensus 358 p~~l 361 (727)
T 4b8c_D 358 PHER 361 (727)
T ss_dssp CCC-
T ss_pred cccc
Confidence 5544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.10 E-value=1.4e-05 Score=65.42 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=47.9
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF 216 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 216 (358)
++++.|++.++ .+..++...++.+++|++|++++|. +..++... ...+++|++|++++.. ++.+. +...+.+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~~--~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV---FDKLTKLTILYLHENK-LQSLP--NGVFDKL 99 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCCC--TTTTTTC
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhH---ccCCCccCEEECCCCC-ccccC--HHHhhCC
Confidence 45566666555 4444443335566666666666552 33222211 2344555555555432 22211 1112334
Q ss_pred ccccEEeEecCCCccccCchhhhccCCCccEEEEecC
Q 039808 217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC 253 (358)
Q Consensus 217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c 253 (358)
++|++|+++++ .++.+++ ..+..+++|+.|+++++
T Consensus 100 ~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred cccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC
Confidence 55555555544 3333322 22344555555555544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=2.6e-05 Score=64.76 Aligned_cols=124 Identities=17% Similarity=0.123 Sum_probs=85.0
Q ss_pred cEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCC
Q 039808 165 KFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244 (358)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~ 244 (358)
+.++++++ +++.++.. .+++|++|.+++.. ++.+... ..++.+++|++|+++++ .++.+.+ ..+..+++
T Consensus 11 ~~l~~s~~-~l~~ip~~------~~~~l~~L~l~~n~-i~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD------IPLHTTELLLNDNE-LGRISSD-GLFGRLPHLVKLELKRN-QLTGIEP-NAFEGASH 79 (192)
T ss_dssp TEEECTTS-CCSSCCSC------CCTTCSEEECCSCC-CCSBCCS-CSGGGCTTCCEEECCSS-CCCCBCT-TTTTTCTT
T ss_pred CEEEcCCC-CcCcCccC------CCCCCCEEECCCCc-CCccCCc-cccccCCCCCEEECCCC-CCCCcCH-hHcCCccc
Confidence 67777765 44555432 34589999998863 4443211 11457889999999886 4665544 35678899
Q ss_pred ccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808 245 LEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP 307 (358)
Q Consensus 245 L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~ 307 (358)
|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.+... .+++|++|++++++
T Consensus 80 L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 80 IQELQLGEN-KIKEISN------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSC-CCCEECS------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCEEECCCC-cCCccCH------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999999886 4544441 23667899999999776 67666444 78899999998875
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.04 E-value=2.5e-07 Score=77.61 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=66.2
Q ss_pred HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808 132 VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV 211 (358)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 211 (358)
....+++++.|++.++ .+..++ .+.++++|++|++++|. +..++.. ...+++|++|+++++ .++.++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~----~~~~~~L~~L~L~~N-~l~~l~---- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENL----DAVADTLEELWISYN-QIASLS---- 109 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEE-ECSCSSH----HHHHHHCSEEEEEEE-ECCCHH----
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCC-cccccch----hhcCCcCCEEECcCC-cCCcCC----
Confidence 3455778888888777 666665 47778888888888773 3333211 334567777777765 333332
Q ss_pred CCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCC
Q 039808 212 PNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP 254 (358)
Q Consensus 212 ~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~ 254 (358)
..+.+++|++|+++++. ++.+.....+..+++|+.|+++++.
T Consensus 110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 23456677777777653 4433221345667777777777663
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=1.8e-05 Score=72.67 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=84.8
Q ss_pred hccCccEEEeccCCC----C-----CccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccc
Q 039808 135 ILACCTAFYLDNHLH----I-----NSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTH 205 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~----~-----~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 205 (358)
.+++|+.|.+..... + ..+.. .+..+++|++|.|++|..+. +. . . ..++|++|.+..+. +..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~-l~-~----~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS-IG-K----K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB-CC-S----C-BCTTCSEEEEECSB-CCH
T ss_pred hcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce-ec-c----c-cCCCCcEEEEecCC-CCh
Confidence 466777777754311 1 01221 24567888888887763322 11 1 1 36788888886553 221
Q ss_pred ccccccCCCcCccccEEeEecCC-------CccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcce
Q 039808 206 ICEGSVPNGSFARLRILSVHACP-------KLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKK 278 (358)
Q Consensus 206 ~~~~~~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~ 278 (358)
-.........+|+|++|+++.+. .+..+.+......+|+|+.|.+.+|.-....... . .....+|+|+.
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~---l-a~a~~~~~L~~ 283 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM---F-LESDILPQLET 283 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH---H-HHCSSGGGCSE
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH---H-HhCccCCCCCE
Confidence 11001111257888888885321 1211111001135788888888887543211100 0 11246788999
Q ss_pred eccccccccccc-----cCC--CCCCccEEeeeCCc
Q 039808 279 LTLHYLPGLVTI-----WSS--AWPSLEYVSFYDCP 307 (358)
Q Consensus 279 L~l~~c~~L~~~-----~~~--~~~~L~~L~i~~C~ 307 (358)
|+++. +.++.. ... .+++|+.|++++|.
T Consensus 284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 98854 456653 222 56889999988873
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.88 E-value=1.5e-05 Score=80.21 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=64.6
Q ss_pred ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808 110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV 187 (358)
Q Consensus 110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (358)
.+..+..|+.|.+.++. .++..+. .+++|+.|++.++ .+..++. .++++++|++|+|++|. +..++.. +.
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp~~----~~ 290 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSHNR-LTSLPAE----LG 290 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTTSC-CSSCCSS----GG
T ss_pred hhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcCCc-CCccChh----hc
Confidence 34445566777776653 3444333 4677777777777 5666654 46777777777777764 3344433 45
Q ss_pred CCCccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808 188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP 228 (358)
Q Consensus 188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 228 (358)
.+++|++|.++++ .++.+ +..++.+++|+.|+++++.
T Consensus 291 ~l~~L~~L~L~~N-~l~~l---p~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTL---PWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGTTCSEEECCSS-CCCCC---CSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCEEECCCC-CCCcc---ChhhhcCCCccEEeCCCCc
Confidence 6677777777765 33444 2235567777777777764
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.88 E-value=0.00019 Score=66.88 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=148.7
Q ss_pred cceeccCCC--CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808 6 NVEYVKMPP--QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN 83 (358)
Q Consensus 6 ~L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~ 83 (358)
+|+.+.++. +.|+.+.+.+ .+|+++.+.+ +++... ...+.+|++|+.+.+..+.+..++. .. +.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~------~~aF~~c~~L~~l~l~~n~l~~I~~--~a---F~ 201 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS--TLEQLK------EDIFYYCYNLKKADLSKTKITKLPA--ST---FV 201 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTT-CCCCEEECCT--TCCEEC------SSTTTTCTTCCEEECTTSCCSEECT--TT---TT
T ss_pred CccEEEeCCCccEECHHhcCC-CCceEEEeCC--CccEeh------HHHhhCcccCCeeecCCCcceEech--hh---Ee
Confidence 577788876 5688887777 4799998875 332221 2358899999999985556666653 11 12
Q ss_pred ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC-CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808 84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE-NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN 162 (358)
Q Consensus 84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~ 162 (358)
..+|+.+.+. .+ +..++. ..+.++..|+.+.+.+.- .+....+.. .+|+.+.+.+ .+..+...++.+++
T Consensus 202 ~~~L~~l~lp---~~---l~~I~~-~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~ 271 (401)
T 4fdw_A 202 YAGIEEVLLP---VT---LKEIGS-QAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCP 271 (401)
T ss_dssp TCCCSEEECC---TT---CCEECT-TTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCT
T ss_pred ecccCEEEeC---Cc---hheehh-hHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCC
Confidence 3556655541 11 111111 356667788888886642 344433333 7899999843 57788777899999
Q ss_pred CCcEEEeecCCCc----eEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808 163 GLKFCIISECPKI----ETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM 238 (358)
Q Consensus 163 ~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 238 (358)
+|+.+.+.++... ..+.... ...+++|+++.+.+ +++.+.. ..+..+++|+.+.+.. .++.+... .
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l~~--~i~~I~~--~aF~~c~~L~~l~lp~--~l~~I~~~-a 341 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEIPE--SIRILGQ--GLLGGNRKVTQLTIPA--NVTQINFS-A 341 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECCCT--TCCEECT--TTTTTCCSCCEEEECT--TCCEECTT-S
T ss_pred CCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEeCC--ceEEEhh--hhhcCCCCccEEEECc--cccEEcHH-h
Confidence 9999999875321 2343332 45667889888864 4555532 2244568899999954 46666443 4
Q ss_pred hccCCCccEEEEecCCccccccccccccccccccCC-Ccceecccc
Q 039808 239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALP-RLKKLTLHY 283 (358)
Q Consensus 239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~-~L~~L~l~~ 283 (358)
+.++ +|+.+.+.+. .+..+. ...+.+++ +++.|++..
T Consensus 342 F~~~-~L~~l~l~~n-~~~~l~------~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGT-TPPQVF------EKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSSS-CCCEEEECCS-SCCBCC------CSSCCCSCTTCCEEEECG
T ss_pred CCCC-CCCEEEEcCC-CCcccc------cccccCCCCCccEEEeCH
Confidence 5667 9999999875 333332 12345564 677887754
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.86 E-value=0.0003 Score=65.25 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=47.8
Q ss_pred hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808 239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG 315 (358)
Q Consensus 239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~ 315 (358)
+..+.+|+.+.+.+ .++.+. +.++.++++|+.+.+.+ .++.+... ++.+|+.+.+.. +++.++..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~------~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIG------EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGAN 360 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEEC------TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred cccccccccccccc--ccceec------hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHH
Confidence 34556666666643 233332 12455667788888743 46666655 678888887754 36777654
Q ss_pred C-CCCCCeeEEEec
Q 039808 316 S-NLKHSVMEIKAE 328 (358)
Q Consensus 316 ~-~~~~~L~~~~~~ 328 (358)
. ..+++|+.+.-+
T Consensus 361 aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 361 AFQGCINLKKVELP 374 (394)
T ss_dssp TBTTCTTCCEEEEE
T ss_pred HhhCCCCCCEEEEC
Confidence 3 456788877655
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.71 E-value=6.1e-06 Score=68.95 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCch
Q 039808 22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIK 70 (358)
Q Consensus 22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~ 70 (358)
++++++|++|++++ +.+. .++ .+.++++|+.|++..+.+.
T Consensus 44 ~~~l~~L~~L~ls~-n~l~-------~l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 44 LSTLKACKHLALST-NNIE-------KIS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTTCSEEECSE-EEES-------CCC-CHHHHTTCCEEEEEEEEEC
T ss_pred HhcCCCCCEEECCC-CCCc-------ccc-ccccCCCCCEEECCCCCcc
Confidence 45566666666655 2211 112 4445555555555444433
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.0011 Score=61.30 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=64.9
Q ss_pred CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808 214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS 293 (358)
Q Consensus 214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 293 (358)
....+|+.+.+.+ .++.+.. ..+.++.+|+.+.|.+ .++.+. ..++.++++|+.+.+.. +++.+...
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~------~~aF~~c~~L~~i~lp~--~l~~I~~~ 360 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIG------KRSFRGCTSLSNINFPL--SLRKIGAN 360 (394)
T ss_dssp TTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEEC------TTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred ccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEh------HHhccCCCCCCEEEECc--cccEehHH
Confidence 3457888888854 4555544 3456788999998864 355443 13566778999998854 47777766
Q ss_pred ---CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808 294 ---AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI 325 (358)
Q Consensus 294 ---~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~ 325 (358)
++++|+++++.. .++.+.......++|+.|
T Consensus 361 aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 788999998864 355554444556677665
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.67 E-value=1.6e-05 Score=72.96 Aligned_cols=177 Identities=16% Similarity=0.076 Sum_probs=101.2
Q ss_pred ccCccEEEeccCCCCC--cc----Cc--ccccCccCCcEEEeecCCCce-Ee--cCC--CCccccCCCccceeecccccc
Q 039808 136 LACCTAFYLDNHLHIN--SL----SD--FGVRSINGLKFCIISECPKIE-TV--VDG--KELTTVIFPSLENLSIHHLWN 202 (358)
Q Consensus 136 l~~L~~L~l~~~~~~~--~l----~~--~~l~~l~~L~~L~l~~~~~~~-~~--~~~--~~~~~~~l~~L~~L~l~~~~~ 202 (358)
....+.|.+.... .. .. .. .+...+++|+.|.|.+...-. .+ .+. -...+..+|+|++|.+.++..
T Consensus 106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3456778777552 22 11 01 035678999999996532100 01 010 001235689999999988643
Q ss_pred cccccccccCCCcCccccEEeEecCCCccccCchhh-hccCCCccEEEEecCCc-------cccccccccccccccccCC
Q 039808 203 LTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM-IHFMSNLEDLTVEDCPA-------IEEIISEGEIIDSGCTALP 274 (358)
Q Consensus 203 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-l~~l~~L~~L~i~~c~~-------l~~i~~~~~~~~~~~~~l~ 274 (358)
+. + .+ . ..++|++|.+..|. +..-....+ ...+|+|+.|+++.+.. ++.+.. ......||
T Consensus 185 l~-l--~~--~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-----~l~~~~~p 252 (362)
T 2ra8_A 185 LS-I--GK--K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-----LFSKDRFP 252 (362)
T ss_dssp CB-C--CS--C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-----GSCTTTCT
T ss_pred ce-e--cc--c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-----HHhcCCCC
Confidence 22 1 11 1 36899999998775 332111111 23799999999964221 111110 01234699
Q ss_pred Ccceeccccccccccc----cCC-CCCCccEEeeeCCcCCCc-----cCCCCCCCCCeeEEE
Q 039808 275 RLKKLTLHYLPGLVTI----WSS-AWPSLEYVSFYDCPRLKN-----IGLGSNLKHSVMEIK 326 (358)
Q Consensus 275 ~L~~L~l~~c~~L~~~----~~~-~~~~L~~L~i~~C~~L~~-----lP~~~~~~~~L~~~~ 326 (358)
+|+.|.+.+|.--... ... .+++|++|+++.+ .+.. ++.++..+++|+.+.
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEE
Confidence 9999999887432111 111 5899999999875 4555 455544556666664
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.47 E-value=6.6e-06 Score=75.98 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=75.9
Q ss_pred hccCccEEEeccCCCCCccCccc----cc-CccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccc
Q 039808 135 ILACCTAFYLDNHLHINSLSDFG----VR-SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEG 209 (358)
Q Consensus 135 ~l~~L~~L~l~~~~~~~~l~~~~----l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 209 (358)
.++.++.|++.++ .+....... +. ..++|++|++++|......... -...+++|++|+++++. ++.....
T Consensus 70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~-l~~~~~~ 144 (372)
T 3un9_A 70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNS-LGPEACK 144 (372)
T ss_dssp HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSC-CCHHHHH
T ss_pred HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCC-CCHHHHH
Confidence 3456666666666 333321111 11 2256777777666321110000 01234566667666653 2211000
Q ss_pred ccC--C-CcCccccEEeEecCCCccccCch---hhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccc
Q 039808 210 SVP--N-GSFARLRILSVHACPKLKFVFSS---FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHY 283 (358)
Q Consensus 210 ~~~--~-~~~~~L~~L~l~~c~~l~~l~~~---~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~ 283 (358)
... . ...++|++|++++|. ++..... ..+...++|++|++++|. +..... ......+...++|+.|++++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~--~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL--ELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH--HHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH--HHHHHHHhcCCCcCeEECCC
Confidence 000 0 123567777777763 4331111 123456777777777764 322100 00001234456777777776
Q ss_pred ccccccccCC-------CCCCccEEeeeCCc
Q 039808 284 LPGLVTIWSS-------AWPSLEYVSFYDCP 307 (358)
Q Consensus 284 c~~L~~~~~~-------~~~~L~~L~i~~C~ 307 (358)
| .++..... ..++|++|++++|+
T Consensus 221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 N-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp S-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 6 44433221 35777777777764
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.0052 Score=56.78 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=17.8
Q ss_pred ceeccCCC--CccCCchhhcCccccEEEeee
Q 039808 7 VEYVKMPP--QLISSGIISRLHALKTLSIVV 35 (358)
Q Consensus 7 L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~ 35 (358)
|+.+.+|. +.|+...+.++.+|+.+.+.+
T Consensus 66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEEEEGG
T ss_pred CEEEEECCCeeEEhHHHhhCCccCceEeecC
Confidence 55555554 456666666666677666654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.31 E-value=0.00064 Score=61.68 Aligned_cols=87 Identities=24% Similarity=0.233 Sum_probs=57.2
Q ss_pred ccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccc
Q 039808 186 TVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEI 265 (358)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~ 265 (358)
+..+++|++|++++...++.+.. ..++.+++|+.|+++++ ++..+++ ..+..+++|+.|+++++ .+..++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~---- 97 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALESLSW---- 97 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG--GGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSCCCS----
T ss_pred CCCCCCeeEEEccCCCCCCCcCh--hHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccceeCH----
Confidence 34567888888876556665532 23557888899998886 5777644 35578888999988875 5555541
Q ss_pred cccccccCCCcceeccccc
Q 039808 266 IDSGCTALPRLKKLTLHYL 284 (358)
Q Consensus 266 ~~~~~~~l~~L~~L~l~~c 284 (358)
..+..+ +|+.|++.++
T Consensus 98 --~~~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 98 --KTVQGL-SLQELVLSGN 113 (347)
T ss_dssp --TTTCSC-CCCEEECCSS
T ss_pred --HHcccC-CceEEEeeCC
Confidence 112223 3888888654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=0.00063 Score=55.38 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=28.2
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccc
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHH 199 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 199 (358)
++++.|++.++ .+..++...++++++|++|++++| .+..++... ...+++|+.|++++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGV---FDKLTQLTQLDLND 90 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCS
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhH---hCCcchhhEEECCC
Confidence 45555555555 444443334555666666666555 333332221 23345555555544
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.00052 Score=55.87 Aligned_cols=81 Identities=11% Similarity=0.195 Sum_probs=57.3
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
..++.|.+.++. +++...+..+++|+.|++.++ .+..++...+.++++|++|++++| .+..++... ...+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA---FDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHH---hccccCC
Confidence 367778877764 555555667889999999998 788887655788999999999887 344443321 4456677
Q ss_pred ceeecccc
Q 039808 193 ENLSIHHL 200 (358)
Q Consensus 193 ~~L~l~~~ 200 (358)
+.|++.+.
T Consensus 108 ~~L~L~~N 115 (174)
T 2r9u_A 108 THIYLYNN 115 (174)
T ss_dssp SEEECCSS
T ss_pred CEEEeCCC
Confidence 77777654
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.21 E-value=0.00088 Score=54.23 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=28.5
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccc
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHH 199 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 199 (358)
++++.|++.++ .+..+....+.++++|++|++++|. +..++... ...+++|++|++++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~---f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGV---FDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCS
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhh---ccCCCCCCEEECCC
Confidence 45555565555 5555543345566666666666552 33332221 23344555555544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.21 E-value=0.0012 Score=59.91 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808 213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS 292 (358)
Q Consensus 213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 292 (358)
++.+++|++|+++++.+++.+++ ..++.+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .|+.++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAP------DAFHFTPRLSRLNLSFN-ALESLSW 97 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECT------TGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeCH------HHhcCCcCCCEEeCCCC-ccceeCH
Confidence 45677888888886556777644 34678888888888886 5655541 24567888888888664 7887776
Q ss_pred C--CCCCccEEeeeCCc
Q 039808 293 S--AWPSLEYVSFYDCP 307 (358)
Q Consensus 293 ~--~~~~L~~L~i~~C~ 307 (358)
. ...+|+.|++.+++
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 6 33338888888764
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.12 E-value=0.00089 Score=54.20 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=57.9
Q ss_pred cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808 115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL 192 (358)
Q Consensus 115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 192 (358)
..++.|.+.++. +++...+..+++|+.|++.++ .+..++...+.++++|++|++++|. +..++... ...+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGA---FDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHH---hcCCCCC
Confidence 467788887764 555555667889999999998 7878776567899999999999874 44443321 4456677
Q ss_pred ceeecccc
Q 039808 193 ENLSIHHL 200 (358)
Q Consensus 193 ~~L~l~~~ 200 (358)
+.|++++.
T Consensus 105 ~~L~L~~N 112 (170)
T 3g39_A 105 THIWLLNN 112 (170)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 77777653
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.85 E-value=0.0012 Score=60.75 Aligned_cols=146 Identities=10% Similarity=-0.067 Sum_probs=67.9
Q ss_pred cCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccc-cCCCccceeecccccccccccccc--cC
Q 039808 137 ACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTT-VIFPSLENLSIHHLWNLTHICEGS--VP 212 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~--~~ 212 (358)
++++.|++.++ .+...... -...+++|++|++++|.-.......-...+ ...++|++|++++|. ++...... ..
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 46667777666 34321111 123455677777777632111000000001 234567777777664 22210000 00
Q ss_pred CCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccc
Q 039808 213 NGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVT 289 (358)
Q Consensus 213 ~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 289 (358)
....++|++|++++|. ++..+. ...+...++|+.|++++|. +...... .........++|+.|+++++ .++.
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~--~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL--ALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH--HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH--HHHHHHHhCCCCCEEeccCC-CCCH
Confidence 1235677788877764 443211 1233456778888887763 3221100 00012334577888888766 3443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.00 E-value=2 Score=38.82 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=59.2
Q ss_pred CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808 216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-- 293 (358)
Q Consensus 216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-- 293 (358)
...|+.+.+.+ .++.+.. ..+..+.+|+.+.+.. .++.+. ...+..+++|+.+.+.+. .++.++..
T Consensus 239 ~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~------~~aF~~c~~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVP------YLLCSGCSNLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp CSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEEC------TTTTTTCTTCCEEEECCT-TCCEECTTTT
T ss_pred CccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecc------cccccccccccccccccc-ccceehhhhh
Confidence 45666666643 2444433 2345667777777753 344333 124566788888888543 56777666
Q ss_pred -CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEec
Q 039808 294 -AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKAE 328 (358)
Q Consensus 294 -~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~~ 328 (358)
++.+|+.+.+.. +++.++.. ...+++|+.+.-+
T Consensus 307 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 307 MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 778888888853 46666554 2456677766444
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.86 E-value=0.41 Score=43.83 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=34.4
Q ss_pred ccceeccCCC--CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEE
Q 039808 5 CNVEYVKMPP--QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCF 64 (358)
Q Consensus 5 ~~L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 64 (358)
.+|+.+.++. ..++...+..+.+|+.+.+.. ...... ...+.+|..|+.+.+
T Consensus 114 ~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~------~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 114 SELTDIPILDSVTEIDSEAFHHCEELDTVTIPE--GVTSVA------DGMFSYCYSLHTVTL 167 (394)
T ss_dssp TTCCBCGGGTTCSEECTTTTTTCTTCCEEECCT--TCCEEC------TTTTTTCTTCCEEEC
T ss_pred ccceeeccCCccceehhhhhhhhcccccccccc--eeeeec------ccceecccccccccc
Confidence 4566666655 567888888899999998864 221111 224677888887776
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.34 E-value=0.029 Score=48.84 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.2
Q ss_pred ccCCCccEEEEec
Q 039808 240 HFMSNLEDLTVED 252 (358)
Q Consensus 240 ~~l~~L~~L~i~~ 252 (358)
+.+++|+.|++++
T Consensus 193 ~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 193 QKAPNLKILNLSG 205 (267)
T ss_dssp HHSTTCCEEECTT
T ss_pred hhCCCCCEEECCC
Confidence 3445555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.71 E-value=0.15 Score=44.29 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=18.3
Q ss_pred cCCCcceeccccccccccccCC-CCC--CccEEeeeCCcCCCccC
Q 039808 272 ALPRLKKLTLHYLPGLVTIWSS-AWP--SLEYVSFYDCPRLKNIG 313 (358)
Q Consensus 272 ~l~~L~~L~l~~c~~L~~~~~~-~~~--~L~~L~i~~C~~L~~lP 313 (358)
.+|+|+.|++++. .++.+..- .+. +|++|.+.++|--..+|
T Consensus 194 ~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 194 KAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccC
Confidence 4555555555433 34433211 111 55555555555333333
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.65 E-value=0.039 Score=45.01 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=13.2
Q ss_pred cccCccCCcEEEeecCCCc
Q 039808 157 GVRSINGLKFCIISECPKI 175 (358)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~ 175 (358)
.+...+.|++|++++|..+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp HHTTCTTCCEEECTTCTTC
T ss_pred HHhcCCCCCEEEecCCCCC
Confidence 3566778888888877333
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.88 E-value=0.085 Score=42.96 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=9.4
Q ss_pred ccCccCCcEEEeecCC
Q 039808 158 VRSINGLKFCIISECP 173 (358)
Q Consensus 158 l~~l~~L~~L~l~~~~ 173 (358)
+...++|++|++++|.
T Consensus 61 L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HTTCCSCCEEECTTSC
T ss_pred HHhCCCcCEEECcCCC
Confidence 4445566666666653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.49 E-value=2.2 Score=38.55 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=10.8
Q ss_pred CCccCcccccCccCCcEEEeec
Q 039808 150 INSLSDFGVRSINGLKFCIISE 171 (358)
Q Consensus 150 ~~~l~~~~l~~l~~L~~L~l~~ 171 (358)
+..+...++.++.+|+.+.+.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECC
T ss_pred ceeccccccccccccccccccc
Confidence 3344333455555555555543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.44 E-value=1.2 Score=33.79 Aligned_cols=42 Identities=7% Similarity=-0.112 Sum_probs=25.4
Q ss_pred ccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEcc
Q 039808 16 LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFP 67 (358)
Q Consensus 16 ~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 67 (358)
.+|.++ -.+|++|+|++ +.+..+. ...+..+++|+.|.+..+
T Consensus 24 ~vP~~l---p~~l~~L~Ls~-N~l~~l~------~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 24 SLPTAF---PVDTTELVLTG-NNLTALP------PGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TSCSCC---CTTCSEEECTT-SCCSSCC------TTTGGGCTTCCEEECCSS
T ss_pred cCCCCC---CcCCCEEECCC-CcCCccC------hhhhhhccccCEEEecCC
Confidence 456543 23588888887 4443222 224667778888887654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=76.58 E-value=2.2 Score=32.21 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=22.1
Q ss_pred cCccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808 137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP 173 (358)
Q Consensus 137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 173 (358)
.+++.|++.++ .+..++...+..+++|+.|+|.+|+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 35666666666 5666655556666666666666553
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.72 E-value=9.7 Score=27.16 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=19.4
Q ss_pred ccccCCCcceeccccccccccccCC---CCCCccEEeeeC
Q 039808 269 GCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYD 305 (358)
Q Consensus 269 ~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~ 305 (358)
.+.++.+|+.+.|-. .++.+... .|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 344555666666643 34555444 566666666654
Done!