Query 039810
Match_columns 113
No_of_seqs 135 out of 849
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01160 SUI1_MOF2 translatio 100.0 3.1E-37 6.6E-42 214.8 11.9 108 4-113 2-110 (110)
2 KOG1770 Translation initiation 100.0 2.3E-36 4.9E-41 207.8 10.7 111 1-113 1-112 (112)
3 COG0023 SUI1 Translation initi 100.0 1.3E-29 2.8E-34 174.8 9.9 93 12-111 11-104 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 100.0 4.3E-29 9.4E-34 164.2 8.9 76 30-111 1-77 (77)
5 PF01253 SUI1: Translation ini 99.9 2E-27 4.3E-32 157.3 9.8 81 25-105 1-82 (83)
6 PRK00939 translation initiatio 99.9 3.3E-26 7.2E-31 156.8 9.4 79 25-109 20-99 (99)
7 TIGR01159 DRP1 density-regulat 99.9 9.7E-25 2.1E-29 162.3 9.3 85 25-110 85-172 (173)
8 TIGR01158 SUI1_rel translation 99.9 2.1E-24 4.5E-29 148.3 9.7 75 25-104 20-96 (101)
9 PRK09019 translation initiatio 99.9 1.8E-23 3.8E-28 145.3 10.1 75 24-103 26-102 (108)
10 PRK07451 translation initiatio 99.9 2.6E-23 5.7E-28 145.8 10.3 75 24-103 33-109 (115)
11 PRK06824 translation initiatio 99.9 4.1E-23 8.8E-28 145.4 9.4 73 26-103 38-112 (118)
12 KOG3239 Density-regulated prot 99.7 1.2E-17 2.6E-22 124.2 8.4 85 25-110 97-184 (193)
13 KOG2522 Filamentous baseplate 99.7 4.6E-17 1E-21 135.3 7.2 98 11-109 445-549 (560)
14 PF05046 Img2: Mitochondrial l 98.4 4.1E-06 8.9E-11 56.0 8.8 69 29-102 12-87 (87)
15 KOG4034 Uncharacterized conser 96.9 0.0028 6E-08 47.1 5.8 68 31-102 96-169 (169)
16 PRK14451 acylphosphatase; Prov 93.7 0.35 7.6E-06 32.1 6.2 52 47-98 9-62 (89)
17 PRK03988 translation initiatio 93.1 0.29 6.2E-06 35.4 5.4 57 29-95 31-92 (138)
18 PRK14434 acylphosphatase; Prov 93.0 0.56 1.2E-05 31.4 6.4 60 47-106 8-70 (92)
19 PRK14443 acylphosphatase; Prov 92.5 0.58 1.3E-05 31.5 5.9 55 47-102 10-66 (93)
20 TIGR00311 aIF-2beta translatio 92.2 0.47 1E-05 34.0 5.5 58 28-95 25-87 (133)
21 PRK14450 acylphosphatase; Prov 91.6 1.1 2.3E-05 29.8 6.4 55 46-101 7-64 (91)
22 PRK14444 acylphosphatase; Prov 91.2 1.3 2.8E-05 29.5 6.5 53 46-99 9-61 (92)
23 PRK14420 acylphosphatase; Prov 90.9 1.3 2.8E-05 29.2 6.3 57 48-106 9-67 (91)
24 PRK14426 acylphosphatase; Prov 90.7 1.5 3.3E-05 29.1 6.4 58 47-105 10-69 (92)
25 smart00653 eIF2B_5 domain pres 90.3 1 2.2E-05 31.3 5.5 58 30-95 8-70 (110)
26 PRK14432 acylphosphatase; Prov 90.1 1.9 4.1E-05 28.8 6.5 59 47-107 8-69 (93)
27 PRK14422 acylphosphatase; Prov 90.0 2.2 4.7E-05 28.5 6.7 52 47-99 12-63 (93)
28 PRK14429 acylphosphatase; Prov 89.3 1.9 4.2E-05 28.5 6.0 58 47-106 8-67 (90)
29 PRK14431 acylphosphatase; Prov 88.6 2.3 5E-05 28.2 6.0 56 47-104 8-65 (89)
30 PRK14433 acylphosphatase; Prov 88.4 2.5 5.3E-05 27.9 6.0 52 47-99 7-58 (87)
31 PRK14437 acylphosphatase; Prov 88.3 2.6 5.5E-05 29.2 6.3 52 47-98 29-82 (109)
32 PRK14427 acylphosphatase; Prov 88.3 2.3 5E-05 28.4 5.9 51 48-99 13-63 (94)
33 PRK14435 acylphosphatase; Prov 87.7 2.8 6.1E-05 27.8 6.0 52 47-99 8-59 (90)
34 PRK14425 acylphosphatase; Prov 87.7 2.4 5.3E-05 28.3 5.7 51 48-98 13-65 (94)
35 PRK14439 acylphosphatase; Prov 87.2 3.1 6.8E-05 31.0 6.5 57 45-101 79-137 (163)
36 PRK14428 acylphosphatase; Prov 87.2 3.6 7.8E-05 27.9 6.4 52 47-99 14-65 (97)
37 PRK14442 acylphosphatase; Prov 87.1 3.6 7.7E-05 27.3 6.3 50 47-97 10-59 (91)
38 PRK14423 acylphosphatase; Prov 86.8 3.4 7.3E-05 27.5 6.0 52 47-99 11-62 (92)
39 PF00708 Acylphosphatase: Acyl 86.6 3.4 7.5E-05 26.9 5.9 53 46-99 9-61 (91)
40 PRK14445 acylphosphatase; Prov 86.5 2.9 6.3E-05 27.7 5.6 52 47-99 10-61 (91)
41 PRK14440 acylphosphatase; Prov 86.2 4.4 9.5E-05 26.9 6.3 51 48-99 10-60 (90)
42 PRK14448 acylphosphatase; Prov 85.8 5.3 0.00011 26.4 6.5 51 46-97 7-57 (90)
43 PRK14452 acylphosphatase; Prov 85.7 5.8 0.00012 27.3 6.9 51 46-97 25-75 (107)
44 PRK14436 acylphosphatase; Prov 85.7 4.9 0.00011 26.7 6.4 52 47-99 10-61 (91)
45 PRK14449 acylphosphatase; Prov 85.3 4 8.7E-05 26.9 5.8 52 47-99 9-60 (90)
46 PRK14446 acylphosphatase; Prov 85.2 3.5 7.7E-05 27.3 5.5 52 47-99 8-59 (88)
47 PRK12336 translation initiatio 85.1 2.1 4.5E-05 32.5 4.8 57 29-95 27-88 (201)
48 PRK14421 acylphosphatase; Prov 84.9 4.7 0.0001 27.4 6.1 50 47-97 10-59 (99)
49 PRK14424 acylphosphatase; Prov 84.7 6.3 0.00014 26.4 6.6 53 46-98 12-66 (94)
50 PRK14438 acylphosphatase; Prov 84.7 4.6 9.9E-05 26.8 5.8 53 46-99 8-60 (91)
51 PRK14441 acylphosphatase; Prov 83.7 6 0.00013 26.3 6.1 50 47-97 11-60 (93)
52 PRK14447 acylphosphatase; Prov 83.6 4.5 9.8E-05 27.0 5.5 52 47-99 10-62 (95)
53 PRK14430 acylphosphatase; Prov 82.4 7.8 0.00017 25.8 6.3 51 47-97 10-62 (92)
54 PF01873 eIF-5_eIF-2B: Domain 76.2 3.6 7.8E-05 29.1 3.2 65 27-99 18-88 (125)
55 COG1254 AcyP Acylphosphatases 69.7 31 0.00066 23.1 6.7 52 47-99 10-61 (92)
56 PF11388 DotA: Phagosome traff 61.7 4.8 0.0001 27.7 1.3 27 46-74 3-30 (105)
57 TIGR02433 lysidine_TilS_C tRNA 56.3 14 0.0003 20.9 2.5 25 80-104 9-34 (47)
58 cd04885 ACT_ThrD-I Tandem C-te 50.1 22 0.00047 21.6 2.8 22 82-103 43-65 (68)
59 PF00381 PTS-HPr: PTS HPr comp 45.2 65 0.0014 20.4 4.6 40 52-99 40-79 (84)
60 PF11608 Limkain-b1: Limkain b 45.2 53 0.0012 22.2 4.2 34 43-76 3-37 (90)
61 PHA02450 hypothetical protein 44.6 11 0.00023 22.8 0.7 9 9-17 31-39 (53)
62 PF00691 OmpA: OmpA family; I 43.4 18 0.00038 23.0 1.7 22 90-112 56-77 (97)
63 PRK05412 putative nucleotide-b 41.0 59 0.0013 24.2 4.3 55 42-102 92-150 (161)
64 PRK10897 phosphohistidinoprote 40.1 1.1E+02 0.0023 20.2 6.1 40 52-99 42-81 (90)
65 COG1601 GCD7 Translation initi 39.8 52 0.0011 24.1 3.8 53 43-99 42-100 (151)
66 cd04906 ACT_ThrD-I_1 First of 39.4 38 0.00082 21.6 2.8 21 82-102 45-67 (85)
67 TIGR02802 Pal_lipo peptidoglyc 35.0 24 0.00052 23.0 1.4 23 90-113 57-79 (104)
68 cd02394 vigilin_like_KH K homo 32.6 1.1E+02 0.0023 17.9 3.9 35 61-96 23-57 (62)
69 PF01207 Dus: Dihydrouridine s 29.7 98 0.0021 24.6 4.3 46 56-112 110-159 (309)
70 COG3317 NlpB Uncharacterized l 28.4 3.5E+02 0.0075 22.6 7.3 84 24-108 162-266 (342)
71 PRK10076 pyruvate formate lyas 28.1 70 0.0015 24.2 3.0 46 53-102 18-68 (213)
72 PF10281 Ish1: Putative stress 27.3 70 0.0015 17.5 2.2 16 91-106 7-22 (38)
73 cd01026 TOPRIM_OLD TOPRIM_OLD: 27.2 1.7E+02 0.0038 18.7 4.5 54 42-103 4-57 (97)
74 cd00367 PTS-HPr_like Histidine 27.1 1.6E+02 0.0035 18.2 5.9 49 42-99 27-75 (77)
75 TIGR03704 PrmC_rel_meth putati 26.5 2.6E+02 0.0057 21.3 6.0 46 56-111 195-240 (251)
76 PF00013 KH_1: KH domain syndr 26.3 1.3E+02 0.0028 17.4 3.4 37 59-97 21-57 (60)
77 PF04739 AMPKBI: 5'-AMP-activa 26.3 1.2E+02 0.0025 20.7 3.6 20 28-47 76-95 (100)
78 cd00756 MoaE MoaE family. Memb 25.9 1.7E+02 0.0037 20.4 4.5 44 55-98 49-99 (124)
79 PRK13780 phosphocarrier protei 25.1 2E+02 0.0044 18.7 5.5 42 53-102 41-86 (88)
80 PRK13434 F0F1 ATP synthase sub 25.0 1.5E+02 0.0033 21.6 4.3 50 38-87 101-155 (184)
81 PRK13430 F0F1 ATP synthase sub 25.0 1.8E+02 0.0039 22.8 4.9 51 37-87 196-251 (271)
82 PF05005 Ocnus: Janus/Ocnus fa 24.6 2.4E+02 0.0053 19.4 5.5 41 25-65 12-56 (108)
83 PTZ00423 glideosome-associated 24.6 52 0.0011 24.6 1.7 16 56-71 154-169 (193)
84 PF06918 DUF1280: Protein of u 24.6 1.8E+02 0.0039 22.4 4.8 80 11-90 82-170 (224)
85 PF15538 Toxin_61: Putative to 24.4 70 0.0015 23.7 2.3 37 62-105 4-40 (157)
86 PRK05177 minC septum formation 24.4 2.3E+02 0.005 21.8 5.4 59 40-102 15-78 (239)
87 PF14527 LAGLIDADG_WhiA: WhiA 24.3 75 0.0016 21.0 2.3 42 62-104 4-48 (93)
88 PF12221 HflK_N: Bacterial mem 22.7 65 0.0014 18.6 1.5 16 53-68 20-35 (42)
89 PF04746 DUF575: Protein of un 22.5 79 0.0017 21.7 2.1 27 86-112 65-93 (101)
90 PF04461 DUF520: Protein of un 22.5 1.9E+02 0.0041 21.5 4.3 55 42-102 92-150 (160)
91 PF06925 MGDG_synth: Monogalac 22.3 80 0.0017 22.3 2.3 23 90-113 145-167 (169)
92 cd04909 ACT_PDH-BS C-terminal 22.2 1.1E+02 0.0024 17.9 2.6 21 82-102 46-67 (69)
93 COG0669 CoaD Phosphopantethein 22.2 41 0.0009 25.0 0.8 10 8-17 7-16 (159)
94 PF13014 KH_3: KH domain 22.1 1.3E+02 0.0028 16.4 2.7 28 60-87 13-43 (43)
95 KOG0436 Methionyl-tRNA synthet 22.0 62 0.0013 28.2 1.9 33 81-113 300-337 (578)
96 PF05190 MutS_IV: MutS family 21.9 1.7E+02 0.0037 18.0 3.6 39 55-93 19-58 (92)
97 PRK10560 hofQ outer membrane p 21.9 3.3E+02 0.0071 22.3 6.1 57 53-111 100-158 (386)
98 PF11734 TilS_C: TilS substrat 21.9 44 0.00096 20.9 0.8 26 79-104 8-34 (74)
99 PF09840 DUF2067: Uncharacteri 21.7 2.7E+02 0.0059 20.9 5.2 44 51-95 6-49 (190)
100 PRK10530 pyridoxal phosphate ( 21.4 3.3E+02 0.0073 20.1 5.7 63 39-102 34-102 (272)
101 cd01796 DDI1_N DNA damage indu 20.9 2.1E+02 0.0046 17.4 3.8 23 82-104 41-63 (71)
102 KOG1143 Predicted translation 20.7 2.6E+02 0.0057 24.3 5.3 47 60-110 122-168 (591)
103 COG2080 CoxS Aerobic-type carb 20.7 91 0.002 23.1 2.3 29 40-68 68-97 (156)
104 PF03958 Secretin_N: Bacterial 20.5 2.2E+02 0.0047 17.3 4.8 46 53-99 8-75 (82)
105 COG1647 Esterase/lipase [Gener 20.5 2.2E+02 0.0049 22.5 4.6 70 39-112 13-91 (243)
106 COG2885 OmpA Outer membrane pr 20.4 97 0.0021 22.4 2.5 22 91-113 141-162 (190)
107 PF06183 DinI: DinI-like famil 20.4 2.3E+02 0.005 17.6 4.3 43 56-99 10-55 (65)
108 cd04883 ACT_AcuB C-terminal AC 20.1 1.5E+02 0.0033 17.3 3.0 21 82-102 46-66 (72)
109 KOG0005 Ubiquitin-like protein 20.0 73 0.0016 20.3 1.5 28 80-107 10-41 (70)
110 PF08601 PAP1: Transcription f 20.0 51 0.0011 27.2 1.0 21 52-72 311-331 (347)
No 1
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=100.00 E-value=3.1e-37 Score=214.81 Aligned_cols=108 Identities=64% Similarity=1.083 Sum_probs=97.7
Q ss_pred cccCCCCCCCcccccccCCCCC-CCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeE
Q 039810 4 FDTQIPSAFDPFAEANAEDSGA-GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQV 82 (113)
Q Consensus 4 ~~~~~~~~~d~~~~~~~~~~~~-~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~ 82 (113)
++++. .||||+++..++.-. .....||||+++|+|||.||+|+||+..+|+++|||.||++|||||||+++++++++
T Consensus 2 ~~~~~--~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNLK--SFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred ccccc--CCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 46655 599999986655322 467789999999999999999999998899999999999999999999998888899
Q ss_pred EEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 83 IQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 83 I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
|+||||||++|++||.++||.+++||+||||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999989999999997
No 2
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-36 Score=207.81 Aligned_cols=111 Identities=66% Similarity=1.017 Sum_probs=103.7
Q ss_pred CCccccCCCCCCCcccccccC-CCCCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCC
Q 039810 1 MSEFDTQIPSAFDPFAEANAE-DSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL 79 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~ 79 (113)
|+.++++. +||||+++.+. +...+....||||+++|+|||++|+|+|++.++|++.+++.|||.|||+|++.++|+.
T Consensus 1 e~~iq~~~--~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNLE--DFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccchh--hcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 45677755 89999999887 4478888899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 80 GQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 80 g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
|++|+||||||.+|.+||...|+.+++||+||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-29 Score=174.77 Aligned_cols=93 Identities=32% Similarity=0.508 Sum_probs=81.4
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh
Q 039810 12 FDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90 (113)
Q Consensus 12 ~d~~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~ 90 (113)
.+|++.... ++.+...+.|+|++++|++||.||+|+||+ +++|+++||++||++|||||||++ .+|+||||||
T Consensus 11 ~~p~e~~~~-~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-----~~IeiQGdhr 84 (104)
T COG0023 11 GLPKELTCE-EVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-----GEIEIQGDHR 84 (104)
T ss_pred CCchHHhhh-hcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----CEEEEeChHH
Confidence 567665422 223444899999999999999999999999 899999999999999999999996 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEec
Q 039810 91 KNVSTFLVQAGIVKKEFIKIH 111 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ih 111 (113)
++|.++|.++|| +.++|.+|
T Consensus 85 ~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 85 DKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred HHHHHHHHHcCC-chhhcccC
Confidence 999999999999 66799876
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.96 E-value=4.3e-29 Score=164.17 Aligned_cols=76 Identities=54% Similarity=0.841 Sum_probs=72.4
Q ss_pred eEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCe
Q 039810 30 YVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFI 108 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I 108 (113)
.|+|++++|++||.||+|+||+ +.+|++++||.||++||||||+++ .+|+||||||++|+++|.++||+. +||
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~~~-~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGFAK-DNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCCCH-HHe
Confidence 3899999999999999999999 888999999999999999999985 699999999999999999999976 899
Q ss_pred Eec
Q 039810 109 KIH 111 (113)
Q Consensus 109 ~ih 111 (113)
+||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 999
No 5
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.95 E-value=2e-27 Score=157.30 Aligned_cols=81 Identities=41% Similarity=0.719 Sum_probs=69.0
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
+++.++|+|++++|+|||.||+|+||+ |++|+++||++|+++||||||+.+++..+.+|+|||||++.|.++|.++|++
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~ 80 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGI 80 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSS
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCC
Confidence 367889999999999999999999999 9999999999999999999999988755789999999999999999999885
Q ss_pred CC
Q 039810 104 KK 105 (113)
Q Consensus 104 ~~ 105 (113)
++
T Consensus 81 ~k 82 (83)
T PF01253_consen 81 PK 82 (83)
T ss_dssp E-
T ss_pred CC
Confidence 53
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.93 E-value=3.3e-26 Score=156.83 Aligned_cols=79 Identities=33% Similarity=0.609 Sum_probs=72.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
+.+.+.|+|++++|+|||.||+|+||+ +++|+++|||.||++||||||+++ ++|+||||||++|+++|.++||+
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~~ 94 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGFS 94 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999 999999999999999999999974 57999999999999999999994
Q ss_pred CCCCeE
Q 039810 104 KKEFIK 109 (113)
Q Consensus 104 ~~~~I~ 109 (113)
.+||.
T Consensus 95 -~~~i~ 99 (99)
T PRK00939 95 -EENIE 99 (99)
T ss_pred -hhhcC
Confidence 56773
No 7
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.92 E-value=9.7e-25 Score=162.31 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~--G 101 (113)
++..++|+|++++|+|||.||+|+||+ |++|++++||.|+++||||+||.+++.++.+|+|||||++.|.++|.++ +
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999 9999999999999999999999988888899999999999999999884 6
Q ss_pred CCCCCCeEe
Q 039810 102 IVKKEFIKI 110 (113)
Q Consensus 102 ~~~~~~I~i 110 (113)
+ ++++|..
T Consensus 165 v-~e~~I~~ 172 (173)
T TIGR01159 165 V-GDKDIKD 172 (173)
T ss_pred C-CHHHeee
Confidence 6 5677753
No 8
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.91 E-value=2.1e-24 Score=148.33 Aligned_cols=75 Identities=31% Similarity=0.546 Sum_probs=70.2
Q ss_pred CCCCCeEEEEEEee-cCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 039810 25 AGSKDYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~ 102 (113)
+.+.+.|+|++++| +|+|.||+|+||+ +..|++++||.||++||||||+++ .+|+|||||+++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 34789999999998 8999999999999 899999999999999999999974 5999999999999999999999
Q ss_pred CC
Q 039810 103 VK 104 (113)
Q Consensus 103 ~~ 104 (113)
+.
T Consensus 95 ~~ 96 (101)
T TIGR01158 95 KV 96 (101)
T ss_pred Ce
Confidence 54
No 9
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.90 E-value=1.8e-23 Score=145.27 Aligned_cols=75 Identities=28% Similarity=0.473 Sum_probs=67.4
Q ss_pred CCCCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 24 GAGSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
++...+.|+|+.++ ++++|.||+|+||+ ...|+++|||.||++|||||||++ ++|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577888888775 45778999999999 899999999999999999999985 599999999999999999999
Q ss_pred CC
Q 039810 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 101 f~ 102 (108)
T PRK09019 101 MK 102 (108)
T ss_pred Ce
Confidence 93
No 10
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2.6e-23 Score=145.81 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 24 GAGSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
++.+.+.|+|++++ ++++|.||+|+||+ ++.|+++|||.||++||||||+++ ++|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 56678888888764 56789999999999 889999999999999999999975 589999999999999999999
Q ss_pred CC
Q 039810 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 108 f~ 109 (115)
T PRK07451 108 YK 109 (115)
T ss_pred Ce
Confidence 93
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.89 E-value=4.1e-23 Score=145.42 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=67.1
Q ss_pred CCCCeEEEEEEe-ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 26 GSKDYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 26 ~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
...+.|+|++++ |+++|.||+|+||+ ...|+++|||.||++|||||||++ ++|+||||||++|++||.++||.
T Consensus 38 ~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~~ 112 (118)
T PRK06824 38 AGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGFK 112 (118)
T ss_pred CcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCCe
Confidence 345699998886 47999999999999 999999999999999999999985 69999999999999999999994
No 12
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=124.20 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=75.3
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~--G 101 (113)
+.-+++|.|..+-|.+||.||+|+||+ |+||++++||.|.++||||+||+.++...++|.||||..+.|.+|+.+. -
T Consensus 97 k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~e 176 (193)
T KOG3239|consen 97 KRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPE 176 (193)
T ss_pred ccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhccc
Confidence 345689999999999999999999999 9999999999999999999999998888899999999999999999885 4
Q ss_pred CCCCCCeEe
Q 039810 102 IVKKEFIKI 110 (113)
Q Consensus 102 ~~~~~~I~i 110 (113)
+ ++++..|
T Consensus 177 v-~ed~~~I 184 (193)
T KOG3239|consen 177 V-PEDDVKI 184 (193)
T ss_pred C-Cccccee
Confidence 5 3444433
No 13
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.6e-17 Score=135.34 Aligned_cols=98 Identities=29% Similarity=0.420 Sum_probs=86.9
Q ss_pred CCCcccccccCCC----CCCCCCeEEEEEEeecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCC-CCeEEE
Q 039810 11 AFDPFAEANAEDS----GAGSKDYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQ 84 (113)
Q Consensus 11 ~~d~~~~~~~~~~----~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~-~g~~I~ 84 (113)
.+.||-++...|. -+|..++|.|.+++|.|||+||+|+||+ |++|+..+|..|++.|+|+.|+.+.|. .+.+++
T Consensus 445 rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVq 524 (560)
T KOG2522|consen 445 RMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQ 524 (560)
T ss_pred cCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEE
Confidence 4677777765554 5789999999999999999999999999 999999999999999999999988887 478999
Q ss_pred EcCChhHHHHHHHHH-cCCCCCCCeE
Q 039810 85 LQGDQRKNVSTFLVQ-AGIVKKEFIK 109 (113)
Q Consensus 85 vQGD~~~~v~~~L~~-~G~~~~~~I~ 109 (113)
|||+|.+.|.++|.+ +|+|+ .+|.
T Consensus 525 vQGnqih~iadlL~k~ygipk-K~I~ 549 (560)
T KOG2522|consen 525 VQGNQIHSIADLLNKSYGIPK-KWID 549 (560)
T ss_pred EecchhhHHHHHHHHhhCCCH-HHHh
Confidence 999999999999988 89965 4664
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.38 E-value=4.1e-06 Score=55.98 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=50.7
Q ss_pred CeEEEEEEe-ecCCeeEEEEeCCCCcchHHHHHHHHhhhccc------ccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 29 DYVHIRVQQ-RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC------NGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 29 ~~I~I~~e~-R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~c------ggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
..+-|.... +.|.+.+|+|+.++ + |+..|.++|++.|+= ...|.+ ..+.|+|+|||.+.|++||.++|
T Consensus 12 ~~LPVY~~~k~~g~~~~T~IrkI~-G-D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~G 86 (87)
T PF05046_consen 12 GNLPVYLDIKNGGNRKITVIRKIE-G-DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEKG 86 (87)
T ss_pred CcccEEEEEeCCCcEeEEEEEeec-C-CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHCc
Confidence 344555544 44789999999997 3 567777888777541 233432 25699999999999999999999
Q ss_pred C
Q 039810 102 I 102 (113)
Q Consensus 102 ~ 102 (113)
|
T Consensus 87 F 87 (87)
T PF05046_consen 87 F 87 (87)
T ss_pred C
Confidence 7
No 15
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=96.92 E-value=0.0028 Score=47.06 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=46.1
Q ss_pred EEEEEEe-ecCCeeEEEEeCCC-C----cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 039810 31 VHIRVQQ-RNGRKSLTTVQGLK-K----EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 31 I~I~~e~-R~g~K~VT~V~Gl~-~----~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~ 102 (113)
+-+.... ++|+|.+|+|+.++ + ..||.+.+...-++--| .-|.+ -.+.|.+-|||.+.|++||.++||
T Consensus 96 lPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 96 LPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 3344443 34999999999999 4 34566555554444223 11221 145899999999999999999997
No 16
>PRK14451 acylphosphatase; Provisional
Probab=93.70 E-value=0.35 Score=32.13 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=38.0
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~ 98 (113)
|+|.-.++-+...++.+..+++..|.|...+++.=+|++||+- .++..++|.
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 5565566667777788888888999998776666799999986 334444444
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=93.10 E-value=0.29 Score=35.36 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=43.1
Q ss_pred CeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 29 DYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
++..++++ |+| |++.||. . .=+++-++|.|.+.+|+.|++ + ++...|+|.+.....+
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~ 92 (138)
T PRK03988 31 PKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVIN 92 (138)
T ss_pred CCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHH
Confidence 34444443 644 9999987 2 336999999999999999999 4 4799999998765554
No 18
>PRK14434 acylphosphatase; Provisional
Probab=93.02 E-value=0.56 Score=31.36 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=39.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKE 106 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~-cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~~ 106 (113)
|+|.=.++-..-.+..+.++++ =.|.|...+++.-+|++||+..+.|.+|+.. .|-|+..
T Consensus 8 v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a 70 (92)
T PRK14434 8 VSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWA 70 (92)
T ss_pred EEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCE
Confidence 4455455556666677777777 7799987766667999999865555555543 3654333
No 19
>PRK14443 acylphosphatase; Provisional
Probab=92.45 E-value=0.58 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGI 102 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD--~~~~v~~~L~~~G~ 102 (113)
|+|.=.++-....++.+..+++=.|.|...+++.=+|++||+ ..+...++|.+ |-
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~-g~ 66 (93)
T PRK14443 10 VTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK-GP 66 (93)
T ss_pred EEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc-CC
Confidence 344434445555666666677788999877777789999998 44444444433 54
No 20
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=92.21 E-value=0.47 Score=34.05 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=43.7
Q ss_pred CCeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 28 KDYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
.++..++++ |+| |++.||. . .=+++-+.|.|.+.+|+.|++. ++...|+|.+.....+
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLN 87 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHH
Confidence 344445544 554 9999997 2 3369999999999999999984 3589999998775554
No 21
>PRK14450 acylphosphatase; Provisional
Probab=91.64 E-value=1.1 Score=29.77 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=38.4
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCC-eEEEEcCC--hhHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG-QVIQLQGD--QRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g-~~I~vQGD--~~~~v~~~L~~~G 101 (113)
+|+|.=.++-....+..+..+++=.|.|...+++. -+|++||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 34444455556666777777778889998766554 68999999 5667777775 45
No 22
>PRK14444 acylphosphatase; Provisional
Probab=91.21 E-value=1.3 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=34.8
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.=.++-+...+..+.++++=.|.|+..+++.=+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 9 FISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 34454455555666666666677889998765555699999994 335555544
No 23
>PRK14420 acylphosphatase; Provisional
Probab=90.93 E-value=1.3 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=36.8
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCC
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKE 106 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~~ 106 (113)
+|.=.++-....+..+..+++=.|.|...+++.=+|++||+- +.|.+|+.. .| |+..
T Consensus 9 ~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~-p~~a 67 (91)
T PRK14420 9 DGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKG-SPFS 67 (91)
T ss_pred EEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhC-CCCC
Confidence 343344444555556666667889998776666799999984 666666655 36 4443
No 24
>PRK14426 acylphosphatase; Provisional
Probab=90.71 E-value=1.5 Score=29.14 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=37.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKK 105 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~ 105 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.. +|.+|+.. .|.|+.
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~ 69 (92)
T PRK14426 10 VYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRS 69 (92)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCC
Confidence 34443444555666666667778899987777767999999953 35555433 465553
No 25
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=90.31 E-value=1 Score=31.27 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred eEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 30 YVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
+..+.++ |+| -|++.||. . .=+++-++|.|.+.+|+.|++.. .+...|+|.+..+-.+
T Consensus 8 ~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~ 70 (110)
T smart00653 8 PPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQ 70 (110)
T ss_pred CCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHH
Confidence 3344444 544 68888987 2 33699999999999999999953 2689999998765544
No 26
>PRK14432 acylphosphatase; Provisional
Probab=90.09 E-value=1.9 Score=28.83 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=37.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEc-CChhHHHHHHHHH--cCCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQ-GDQRKNVSTFLVQ--AGIVKKEF 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQ-GD~~~~v~~~L~~--~G~~~~~~ 107 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++| |+. +.|.+|+.. .| |+...
T Consensus 8 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~g-p~~a~ 69 (93)
T PRK14432 8 ISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNG-NKYSN 69 (93)
T ss_pred EEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhC-CCccE
Confidence 3444344445555666666667889998776666799998 985 445555543 35 55433
No 27
>PRK14422 acylphosphatase; Provisional
Probab=89.98 E-value=2.2 Score=28.51 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=35.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+... |.+|+..
T Consensus 12 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 63 (93)
T PRK14422 12 VHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQL 63 (93)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 345445555666667777777788999877666679999998643 4444433
No 28
>PRK14429 acylphosphatase; Provisional
Probab=89.30 E-value=1.9 Score=28.46 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKE 106 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~~~G~~~~~ 106 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.-+|++||+-. +...++|. .| |+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g-p~~a 67 (90)
T PRK14429 8 LTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG-VPCT 67 (90)
T ss_pred EEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC-CCce
Confidence 34444455556666677777778999987666657999999864 44444454 36 4443
No 29
>PRK14431 acylphosphatase; Provisional
Probab=88.64 E-value=2.3 Score=28.20 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=37.7
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVK 104 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G~~~ 104 (113)
|+|.=.++-+.-.++.+.++++=.|.|...++ +-+|++||+. .+...++|.+ |-|+
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~p~ 65 (89)
T PRK14431 8 VFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GASP 65 (89)
T ss_pred EEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CCCC
Confidence 34544555566666777777788899987766 5899999985 4455555543 5533
No 30
>PRK14433 acylphosphatase; Provisional
Probab=88.37 E-value=2.5 Score=27.91 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=35.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|.+|||-. .|.+|+..
T Consensus 7 v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 7 VSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 34433445555666666677778899987776657999999964 56665544
No 31
>PRK14437 acylphosphatase; Provisional
Probab=88.28 E-value=2.6 Score=29.18 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=36.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.-+|++||+.. +...++|.
T Consensus 29 V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 29 VSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 45555555666667777777778899987776668999999964 44444454
No 32
>PRK14427 acylphosphatase; Provisional
Probab=88.27 E-value=2.3 Score=28.44 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.7
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|.=.++-+...++.+..+++=.|.|...+++.=+|++||+.. .|.+|+..
T Consensus 13 ~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~ 63 (94)
T PRK14427 13 FGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDW 63 (94)
T ss_pred EEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 3433444455556666666778899987666657999999874 36555544
No 33
>PRK14435 acylphosphatase; Provisional
Probab=87.75 E-value=2.8 Score=27.77 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=34.3
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 8 VEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 3444444455555666666677889998877766799999986 335555443
No 34
>PRK14425 acylphosphatase; Provisional
Probab=87.65 E-value=2.4 Score=28.33 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=33.7
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
+|.-.++-+...++.+..+++=.|.|+..+++.=+|++||+.- +...++|.
T Consensus 13 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 13 TGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 3433344455555666666668899987766667999999754 55666665
No 35
>PRK14439 acylphosphatase; Provisional
Probab=87.20 E-value=3.1 Score=31.00 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=40.4
Q ss_pred EEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 45 TTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 45 T~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
-.|+|.-.++-....++.+..+++=.|.|...+++.-+|++||+. .+...++|.+.|
T Consensus 79 i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 79 AWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 345666566677777777888888999998777777799999986 444444454434
No 36
>PRK14428 acylphosphatase; Provisional
Probab=87.18 E-value=3.6 Score=27.87 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=35.9
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-+.-.+..+.++++=.|.|...+++.-+|++||+. +.|.+|+..
T Consensus 14 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 14 VTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 3454455556666677777777889998776666799999985 445555444
No 37
>PRK14442 acylphosphatase; Provisional
Probab=87.10 E-value=3.6 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=34.4
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 59 (91)
T PRK14442 10 VGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALE 59 (91)
T ss_pred EEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 34544555556666666677778899987766667999999864 354444
No 38
>PRK14423 acylphosphatase; Provisional
Probab=86.82 E-value=3.4 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+...++.+.++++=.|.|...+++.=+|.+||+.. .|.+|+..
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 11 VSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 34544555566667777777778899987655556999999864 45555433
No 39
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=86.59 E-value=3.4 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=36.6
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|+|.=.++-....++.+..+++=.|.|...+++.-+|++||+- +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 45665567777888888888888889998766665799999964 335555433
No 40
>PRK14445 acylphosphatase; Provisional
Probab=86.53 E-value=2.9 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=34.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+-.. |.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (91)
T PRK14445 10 VSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQ 61 (91)
T ss_pred EEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHH
Confidence 344444555566666777777788999876655579999998632 5444433
No 41
>PRK14440 acylphosphatase; Provisional
Probab=86.23 E-value=4.4 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred eCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
+|.-.++-....+..+.++++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 10 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 10 YGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 343334444555555556666778998766665799999986 556555544
No 42
>PRK14448 acylphosphatase; Provisional
Probab=85.76 E-value=5.3 Score=26.44 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=35.6
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+-. .|.+|+
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~ 57 (90)
T PRK14448 7 IVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFR 57 (90)
T ss_pred EEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHH
Confidence 344554555666667777777778899988777667999999863 244444
No 43
>PRK14452 acylphosphatase; Provisional
Probab=85.74 E-value=5.8 Score=27.35 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.8
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
.|+|.-.++-+.-.+..+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 25 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 25 LIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 344544555556666666666778899987766667999999964 455553
No 44
>PRK14436 acylphosphatase; Provisional
Probab=85.67 E-value=4.9 Score=26.66 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=34.8
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+...++.+..+++=.|.|...+++.=+|++||+- +.|.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 10 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 3444445555666666666777889998776666799999986 335555544
No 45
>PRK14449 acylphosphatase; Provisional
Probab=85.33 E-value=4 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=36.0
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 9 ITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 3454455556666667777777889998776666799999986 336665544
No 46
>PRK14446 acylphosphatase; Provisional
Probab=85.25 E-value=3.5 Score=27.34 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=37.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-+.-.+..+.++++=.|.|...+++.-+|++||+-. .+.+|+..
T Consensus 8 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 8 VSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 45555566666777778888889999998777768999999853 45544433
No 47
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=85.12 E-value=2.1 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=42.2
Q ss_pred CeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 29 DYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
++..++++ |+| |+|.||. . .=+++-++|.|...||+.|++. ++...|+|.+...-.+
T Consensus 27 p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~ 88 (201)
T PRK12336 27 PEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQ 88 (201)
T ss_pred CCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHH
Confidence 34444443 533 9999997 2 3368999999999999999995 3589999998765544
No 48
>PRK14421 acylphosphatase; Provisional
Probab=84.92 E-value=4.7 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=32.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+-.. |.+|+
T Consensus 10 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~ 59 (99)
T PRK14421 10 IRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMI 59 (99)
T ss_pred EEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHH
Confidence 344444445555666666667788999876655579999998643 44444
No 49
>PRK14424 acylphosphatase; Provisional
Probab=84.68 E-value=6.3 Score=26.45 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=35.3
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~--~~v~~~L~ 98 (113)
+|+|.=.++-+...+..+..+++=.|.|...+++.-+|.+||+-. +...++|.
T Consensus 12 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 12 RVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 344444455566666666677778899987776667999999864 34444444
No 50
>PRK14438 acylphosphatase; Provisional
Probab=84.67 E-value=4.6 Score=26.76 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 8 TVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 34555555566667777777788899998766555699999985 335555444
No 51
>PRK14441 acylphosphatase; Provisional
Probab=83.67 E-value=6 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=34.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
|+|.=.++-....+..+.++++=.|.|...+++.-+|++||+-. .|.+|+
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 60 (93)
T PRK14441 11 VSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALV 60 (93)
T ss_pred EEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHH
Confidence 34544555566667777777788899987666657999999843 444443
No 52
>PRK14447 acylphosphatase; Provisional
Probab=83.60 E-value=4.5 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCC-CeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL-GQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~-g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.-.++-+.-.++.+.++++=.|.|...+++ .=+|++||+ .+.|.+|+..
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 10 IRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 455555556666777777777788999876655 368999998 4555555443
No 53
>PRK14430 acylphosphatase; Provisional
Probab=82.36 E-value=7.8 Score=25.77 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L 97 (113)
|.|.=.++-+...+..+.++++=.|.|...+++.-+|++||+- .+.+.++|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 10 AHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 3343344445556666666677889998776666799999984 24555555
No 54
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=76.18 E-value=3.6 Score=29.14 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCCeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhH-HHHHHHHH
Q 039810 27 SKDYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRK-NVSTFLVQ 99 (113)
Q Consensus 27 ~~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~-~v~~~L~~ 99 (113)
..+++.+.++ |+ .=|++.+|. . .=+++-++|.|...+|+.|++.. .+...|+|.|.. .|.++|.+
T Consensus 18 kmP~~~v~~e---G~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~----~~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 18 KMPPPQVKIE---GK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDG----KGRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp CCCT--EEEE---TS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEET----TTEEEEESSSSCCHHHHHHHH
T ss_pred ecCCCeEEEE---cc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECC----CCEEEEEEecCHHHHHHHHHH
Confidence 3445555554 53 568888987 1 23799999999999999999963 268999999765 44445544
No 55
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=69.74 E-value=31 Score=23.14 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.7
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|.|--.++.....++.....++-.|.|+..+++.=+|.+||+--. +..|+..
T Consensus 10 V~GrVQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 10 VYGRVQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred EEEEeccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHH
Confidence 344334555556666666667788999987777779999999666 5555533
No 56
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=61.72 E-value=4.8 Score=27.71 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.2
Q ss_pred EEeCCC-CcchHHHHHHHHhhhcccccEEE
Q 039810 46 TVQGLK-KEFSYNKILKDLKKEFCCNGTVV 74 (113)
Q Consensus 46 ~V~Gl~-~~~dlk~lak~lKk~~~cggsv~ 74 (113)
.++||+ ..+|++.|.|.|++. |.+...
T Consensus 3 s~tgle~s~fd~~ql~k~f~~t--c~~~~a 30 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGKT--CQGDYA 30 (105)
T ss_pred cccccccccCCHHHhhhhhhcc--ccCchH
Confidence 357999 899999999999996 888764
No 57
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=56.29 E-value=14 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.0
Q ss_pred CeEEEEcCC-hhHHHHHHHHHcCCCC
Q 039810 80 GQVIQLQGD-QRKNVSTFLVQAGIVK 104 (113)
Q Consensus 80 g~~I~vQGD-~~~~v~~~L~~~G~~~ 104 (113)
|+.|.+.|. +..+|+++|.+.++|+
T Consensus 9 gd~~~~~g~~~~k~lkk~~~e~kiP~ 34 (47)
T TIGR02433 9 GDRIKLLGRKGSKKLKKLFIDAKVPP 34 (47)
T ss_pred CCEEEECCCCCCchHHHHHHHcCCCH
Confidence 557888876 6789999999999976
No 58
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.07 E-value=22 Score=21.59 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.1
Q ss_pred EEEEcC-ChhHHHHHHHHHcCCC
Q 039810 82 VIQLQG-DQRKNVSTFLVQAGIV 103 (113)
Q Consensus 82 ~I~vQG-D~~~~v~~~L~~~G~~ 103 (113)
.|++++ +|++.+.+.|.+.||.
T Consensus 43 ~ie~~~~~~~~~i~~~L~~~G~~ 65 (68)
T cd04885 43 GIQVPDREDLAELKERLEALGYP 65 (68)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCC
Confidence 578888 7999999999999984
No 59
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=45.23 E-value=65 Score=20.40 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 52 KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 52 ~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
..+|.+.+..-+.=...||..+ +|.++|+.-+...+.|.+
T Consensus 40 ~~vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 40 KTVDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EEEETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHH
T ss_pred eeEecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 3445555555555444455544 488899988777776654
No 60
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=45.18 E-value=53 Score=22.23 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEEEeCCCCcchHHHHHHHHhhhc-ccccEEEeC
Q 039810 43 SLTTVQGLKKEFSYNKILKDLKKEF-CCNGTVVQD 76 (113)
Q Consensus 43 ~VT~V~Gl~~~~dlk~lak~lKk~~-~cggsv~~~ 76 (113)
.+-.|.+|+...|...+...|++.+ .|||-|..-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 3457899997778888887777665 488887643
No 61
>PHA02450 hypothetical protein
Probab=44.56 E-value=11 Score=22.79 Aligned_cols=9 Identities=56% Similarity=1.261 Sum_probs=7.7
Q ss_pred CCCCCcccc
Q 039810 9 PSAFDPFAE 17 (113)
Q Consensus 9 ~~~~d~~~~ 17 (113)
|+.||||--
T Consensus 31 pg~fdpfcp 39 (53)
T PHA02450 31 PGQFDPFCP 39 (53)
T ss_pred CCccCCCCC
Confidence 889999973
No 62
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=43.39 E-value=18 Score=23.00 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.0
Q ss_pred hHHHHHHHHHcCCCCCCCeEecC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHG 112 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg 112 (113)
...|+++|...|++ ++.|.+.|
T Consensus 56 A~~V~~~L~~~gi~-~~ri~~~~ 77 (97)
T PF00691_consen 56 AEAVKQYLVENGIP-PERISVVG 77 (97)
T ss_dssp HHHHHHHHHHTTSS-GGGEEEEE
T ss_pred HHHHHHHHHHcCCC-hHhEEEEE
Confidence 45789999999995 46787655
No 63
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=40.97 E-value=59 Score=24.23 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=36.2
Q ss_pred eeEEEEeCCCCcchHHHHHHHHhhh-cccccEEEeCCCCCeEEEEcCChhH---HHHHHHHHcCC
Q 039810 42 KSLTTVQGLKKEFSYNKILKDLKKE-FCCNGTVVQDPELGQVIQLQGDQRK---NVSTFLVQAGI 102 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKk~-~~cggsv~~~~~~g~~I~vQGD~~~---~v~~~L~~~G~ 102 (113)
-.+++..|++.+ ..+++.|.+|-. +=.-+++. |++|-|.|-.|+ .+.++|.+..+
T Consensus 92 q~i~lk~GI~~e-~AKkIvK~IKd~klKVqa~IQ-----Gd~vRVtgKkrDDLQ~viallk~~d~ 150 (161)
T PRK05412 92 QEVKLKQGIDQE-LAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQAVIALLRKADL 150 (161)
T ss_pred EEEehhhccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHhHHHHHHHHHHhccC
Confidence 478888899833 367777777642 22444443 789999997776 56667776533
No 64
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=40.13 E-value=1.1e+02 Score=20.16 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=29.2
Q ss_pred CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 52 KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 52 ~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
...|.+.+..-|.-...||..+. |.+.|+.-+...+.|.+
T Consensus 42 ~~~~akSil~lm~Lg~~~G~~i~--------v~~~G~De~~A~~~l~~ 81 (90)
T PRK10897 42 TEAEANSVIALLMLDSAKGRQIE--------VEATGPQEEEALAAVIA 81 (90)
T ss_pred cEEchHhHHHHHHhCCCCCCEEE--------EEEECcCHHHHHHHHHH
Confidence 35677888888877777777764 88999987776665544
No 65
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=39.79 E-value=52 Score=24.13 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=37.9
Q ss_pred eEEEEeCCC-----CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh-hHHHHHHHHH
Q 039810 43 SLTTVQGLK-----KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ-RKNVSTFLVQ 99 (113)
Q Consensus 43 ~VT~V~Gl~-----~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~-~~~v~~~L~~ 99 (113)
..|++.++. -.-|++-+++.|++.++.+|++.. ...+.+||-. +..|.+.|..
T Consensus 42 ~~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~----~~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 42 NRTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDG----KGRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred chhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCC----cceEEEEecccHHHHHHHHHH
Confidence 446677664 246899999999999999999863 1577788874 4455555554
No 66
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.38 E-value=38 Score=21.57 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=18.6
Q ss_pred EEEEcC--ChhHHHHHHHHHcCC
Q 039810 82 VIQLQG--DQRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~vQG--D~~~~v~~~L~~~G~ 102 (113)
.|++.+ +|.+.+.+.|.+.||
T Consensus 45 ~ie~~~~~~~~~~i~~~L~~~G~ 67 (85)
T cd04906 45 GVSVANGAEELAELLEDLKSAGY 67 (85)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCC
Confidence 467778 899999999999999
No 67
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=34.96 E-value=24 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.2
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
...|+++|.+.|++ ++.|.+.|+
T Consensus 57 A~~V~~~L~~~gi~-~~ri~~~g~ 79 (104)
T TIGR02802 57 ANAVKDYLQAKGVS-ASQIETVSY 79 (104)
T ss_pred HHHHHHHHHHcCCC-HHHeEEEee
Confidence 35688899999995 457877664
No 68
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.57 E-value=1.1e+02 Score=17.89 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHH
Q 039810 61 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTF 96 (113)
Q Consensus 61 k~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~ 96 (113)
+.|...++|.-.+.........|.|.|. .+.+...
T Consensus 23 ~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 23 RKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 4556664454444332223568999999 4555544
No 69
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=29.70 E-value=98 Score=24.58 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC----hhHHHHHHHHHcCCCCCCCeEecC
Q 039810 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD----QRKNVSTFLVQAGIVKKEFIKIHG 112 (113)
Q Consensus 56 lk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD----~~~~v~~~L~~~G~~~~~~I~ihg 112 (113)
+.++.+.+++.+..--|++ |-+.=| ....+...|.+.|+ +.|.|||
T Consensus 110 ~~~iv~~~~~~~~~pvsvK--------iR~g~~~~~~~~~~~~~~l~~~G~---~~i~vH~ 159 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVK--------IRLGWDDSPEETIEFARILEDAGV---SAITVHG 159 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEE--------EESECT--CHHHHHHHHHHHHTT-----EEEEEC
T ss_pred hhHHHHhhhcccccceEEe--------cccccccchhHHHHHHHHhhhccc---ceEEEec
Confidence 6677777777755455554 333333 23566677888897 5899998
No 70
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=28.44 E-value=3.5e+02 Score=22.56 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEEEe-ecCCeeEEE----------------EeCCCCcchHHHHHHHHhhhcccccEEEeCCC-CCeEEEE
Q 039810 24 GAGSKDYVHIRVQQ-RNGRKSLTT----------------VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQL 85 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~----------------V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~-~g~~I~v 85 (113)
..+....+.|++++ ++.++..|. |.+|. ..++++.+..+...+...|++--... ++..+.+
T Consensus 162 ~tg~~~a~~VrI~~~~q~g~v~~~~~a~kqry~s~~~n~iv~~ld-~a~~~~~~~~~sr~~~~l~~~~~~d~~g~p~Li~ 240 (342)
T COG3317 162 STGYQDAFTVRILQGKQTGKVFTPHAADKQRYSSEMLNQIVWGLD-KSDPDEEAAFLSRLMQTLGVQSAADDTGLPVLIV 240 (342)
T ss_pred ccCceeeEEEEEecccccceEeccchhhhhhhcccchhceecccC-cccHHHHHHHHHhhhhhcCccccccccCCceEEE
Confidence 46778889999987 556677766 33333 23577777777777777777643222 4579999
Q ss_pred cCChh---HHHHHHHHHcCCCCCCCe
Q 039810 86 QGDQR---KNVSTFLVQAGIVKKEFI 108 (113)
Q Consensus 86 QGD~~---~~v~~~L~~~G~~~~~~I 108 (113)
||+.- .++-..|.+.||.-.+..
T Consensus 241 ~~pfd~~W~rl~~aLdkvg~~V~d~n 266 (342)
T COG3317 241 RGPFDRVWQRLPAALDKVGFTVTDRN 266 (342)
T ss_pred eCCcchHHHHHHHhHhhcCCEeeccc
Confidence 99965 477778888898544433
No 71
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.11 E-value=70 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=34.3
Q ss_pred cchHHHHHHHHhhh--c---ccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 039810 53 EFSYNKILKDLKKE--F---CCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 53 ~~dlk~lak~lKk~--~---~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~ 102 (113)
.+.++++.+.+++. | +|||-+.. |+|=.+|-+....+.+.+.+.|+
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~S----GGEPllq~~fl~~l~~~~k~~gi 68 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLS----GGEVLMQAEFATRFLQRLRLWGV 68 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEe----CchHHcCHHHHHHHHHHHHHcCC
Confidence 35678888887764 1 67776654 67888998888888888888887
No 72
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.32 E-value=70 Score=17.50 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCCCCC
Q 039810 91 KNVSTFLVQAGIVKKE 106 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~ 106 (113)
..+.++|.+.|++.++
T Consensus 7 ~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPK 22 (38)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 5789999999997654
No 73
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.17 E-value=1.7e+02 Score=18.75 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=36.3
Q ss_pred eeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 039810 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~ 103 (113)
|.|-+|+|-.+..=+..+++.+.+.+.-.+ =..|.+.|........+|...|++
T Consensus 4 ~~vIlVEG~tE~~~l~~~~~~~~~~~~~~~--------i~ii~~gG~~~~~~~~ll~~~~i~ 57 (97)
T cd01026 4 DKVILVEGDSEEILLPALAKKLGLDLDEAG--------ISIIPVGGKNFKPFIKLLNALGIP 57 (97)
T ss_pred CeEEEEecHHHHHHHHHHHHHhCCCHHHCC--------EEEEEeCCcchHHHHHHHHHcCCC
Confidence 567889988755557777777632221111 136888898777888888888883
No 74
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=27.07 E-value=1.6e+02 Score=18.19 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=33.4
Q ss_pred eeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
-.|++..+ ...+|.+.+..-|.-...+|-.+. |.+.|+--+...+.|.+
T Consensus 27 ~~v~i~~~-~~~vdakSil~i~~L~~~~G~~i~--------i~~~G~de~~al~~l~~ 75 (77)
T cd00367 27 SDITLRKG-GRKANAKSILGLMSLGAKQGDEIT--------LSAEGEDAEEALEALAE 75 (77)
T ss_pred CEEEEEEC-CEEEcHHhHHHHHHcCCCCCCEEE--------EEEECcCHHHHHHHHHH
Confidence 34555544 356788888888886666666663 78889877777666654
No 75
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=26.53 E-value=2.6e+02 Score=21.34 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeEec
Q 039810 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIH 111 (113)
Q Consensus 56 lk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ih 111 (113)
+..+++...+.+..+|.+. ++..=++...+.++|.+.|+. ..|..|
T Consensus 195 ~~~i~~~a~~~L~~gG~l~--------l~~~~~~~~~v~~~l~~~g~~--~~~~~~ 240 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLL--------VETSERQAPLAVEAFARAGLI--ARVASS 240 (251)
T ss_pred HHHHHHHHHHhcCCCCEEE--------EEECcchHHHHHHHHHHCCCC--ceeeEc
Confidence 4577777777777777764 556567888999999999993 245555
No 76
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=26.29 E-value=1.3e+02 Score=17.42 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 039810 59 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 59 lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L 97 (113)
..+.+.+.++|.-.+.++ +....|.|.| ..+.+.+.+
T Consensus 21 ~i~~I~~~t~~~I~i~~~-~~~~~v~I~G-~~~~v~~A~ 57 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDD-DERDIVTISG-SPEQVEKAK 57 (60)
T ss_dssp HHHHHHHHHTSEEEEEST-TEEEEEEEEE-SHHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCC-CCcEEEEEEe-CHHHHHHHH
Confidence 457788887788777543 2224899999 666665543
No 77
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=26.26 E-value=1.2e+02 Score=20.65 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.4
Q ss_pred CCeEEEEEEeecCCeeEEEE
Q 039810 28 KDYVHIRVQQRNGRKSLTTV 47 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V 47 (113)
...+.+..-.|=.+|.||+|
T Consensus 76 ~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 76 DGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEEecceEEEEE
Confidence 44677788889899999998
No 78
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=25.87 E-value=1.7e+02 Score=20.38 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhcccccEEEeCCCC----Ce---EEEEcCChhHHHHHHHH
Q 039810 55 SYNKILKDLKKEFCCNGTVVQDPEL----GQ---VIQLQGDQRKNVSTFLV 98 (113)
Q Consensus 55 dlk~lak~lKk~~~cggsv~~~~~~----g~---~I~vQGD~~~~v~~~L~ 98 (113)
.+++++.+.++++++......+-.+ |+ .|-+-++||....+.+.
T Consensus 49 ~l~~I~~e~~~k~~~~~v~v~HR~G~l~vGe~~v~i~v~a~hR~~af~A~~ 99 (124)
T cd00756 49 ELEEIAEEARERWGLLRVAIIHRVGRLPPGEAIVLVAVSSPHRKEAFEACE 99 (124)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEEEEecCCHHHHHHHHH
Confidence 3888999999999888776643322 22 78889999998877543
No 79
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=25.08 E-value=2e+02 Score=18.68 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=27.7
Q ss_pred cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHH----HHHHHHHcCC
Q 039810 53 EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN----VSTFLVQAGI 102 (113)
Q Consensus 53 ~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~----v~~~L~~~G~ 102 (113)
..|.+.+..-|.-...||..+ +|.+.|+--+. +.++|.+.|+
T Consensus 41 ~vdakSil~lm~Lg~~~G~~v--------~i~a~G~De~~Al~~l~~~l~~~~l 86 (88)
T PRK13780 41 SVNLKSIMGVMSLGVGQGADI--------TISAEGADAADAIAAIEETMKKEGL 86 (88)
T ss_pred EEechhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHHHHhccc
Confidence 456677777777666666666 48889987666 4445544454
No 80
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=25.03 E-value=1.5e+02 Score=21.61 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.8
Q ss_pred ecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEE--eCCC--CCeEEEEcC
Q 039810 38 RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVV--QDPE--LGQVIQLQG 87 (113)
Q Consensus 38 R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~--~~~~--~g~~I~vQG 87 (113)
++|...+|+.+-.+ ..-..+++.+.|++++++.-.+. .+|+ +|-.|.+..
T Consensus 101 ~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~~v~l~~~vDpsLIGG~ii~igd 155 (184)
T PRK13434 101 KKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKSEFILEVSEDKNLLGGFVVQFND 155 (184)
T ss_pred HcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHCCEeEEEeeeChHHcCceEEEECC
Confidence 45777888888887 66679999999999987654443 3443 454555543
No 81
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=24.95 E-value=1.8e+02 Score=22.84 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=36.3
Q ss_pred eecCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEE--eCCC--CCeEEEEcC
Q 039810 37 QRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVV--QDPE--LGQVIQLQG 87 (113)
Q Consensus 37 ~R~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~--~~~~--~g~~I~vQG 87 (113)
.++|...+++++-.+ ..-..+.|.+.|+++++.--.+. .+|+ +|-.|.+-.
T Consensus 196 ~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~~V~l~~~VDpsLIGGivI~vGd 251 (271)
T PRK13430 196 ARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVHLNSEVDPSVLGGMRVQVGD 251 (271)
T ss_pred HHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCCceEEEeeECccccCcEEEEECC
Confidence 356778899998888 77789999999999987655443 4444 454555533
No 82
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=24.64 E-value=2.4e+02 Score=19.43 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=30.2
Q ss_pred CCCCCeEEEEEEeecCCeeEEEEeCCC---Ccch-HHHHHHHHhh
Q 039810 25 AGSKDYVHIRVQQRNGRKSLTTVQGLK---KEFS-YNKILKDLKK 65 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~---~~~d-lk~lak~lKk 65 (113)
.|....|.|++.-..+...-++|+|.. +..| ++++.++|++
T Consensus 12 ~G~fKYvLi~v~~~~~~~~k~iVRG~~~~~yH~di~d~~~~el~~ 56 (108)
T PF05005_consen 12 EGVFKYVLIRVTDHGSGESKYIVRGYKRAEYHADIYDEVQEELEK 56 (108)
T ss_dssp SSEEEEEEEEEES-G---EEEEEEEETT-SSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEeCCCCEEEEEEECCcchhhHHHHHHHHHHHHHH
Confidence 578889999998766888999999988 5555 7788888876
No 83
>PTZ00423 glideosome-associated protein 45; Provisional
Probab=24.63 E-value=52 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhccccc
Q 039810 56 YNKILKDLKKEFCCNG 71 (113)
Q Consensus 56 lk~lak~lKk~~~cgg 71 (113)
+.+.||.|.++|||+-
T Consensus 154 ~DEtAk~~s~RCGcdL 169 (193)
T PTZ00423 154 LDETAKVFSRRCGCDL 169 (193)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 7889999999966653
No 84
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=24.61 E-value=1.8e+02 Score=22.45 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=43.2
Q ss_pred CCCcccccccCCC---CCCCCCeEEEEEEeec----CCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCe--
Q 039810 11 AFDPFAEANAEDS---GAGSKDYVHIRVQQRN----GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQ-- 81 (113)
Q Consensus 11 ~~d~~~~~~~~~~---~~~~~~~I~I~~e~R~----g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~-- 81 (113)
+||||.-..+-.+ .-+....-.|..+... ++|.||+++=+-.--|++.+...-=..++-++-+.-+...++
T Consensus 82 g~Dvf~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~~~v~~~dv~~~l~~rle~l~~~~~L~~~~~t~d~I 161 (224)
T PF06918_consen 82 GFDVFPSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVTCVVSIKDVEKLLSRRLEQLSKSGKLIFDDGTGDEI 161 (224)
T ss_pred CCCCCCCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEEEEEEecCHHHHHHHHHHHHHHcCCceeCCCCCCCE
Confidence 5788865432222 1233344455555433 468888886543333666655555555555666655443333
Q ss_pred EEEEcCChh
Q 039810 82 VIQLQGDQR 90 (113)
Q Consensus 82 ~I~vQGD~~ 90 (113)
+|-|.||..
T Consensus 162 ~l~igGDkG 170 (224)
T PF06918_consen 162 WLGIGGDKG 170 (224)
T ss_pred EEEEcccCC
Confidence 666668864
No 85
>PF15538 Toxin_61: Putative toxin 61
Probab=24.43 E-value=70 Score=23.75 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=30.3
Q ss_pred HHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCC
Q 039810 62 DLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKK 105 (113)
Q Consensus 62 ~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~ 105 (113)
.|-++||-+|.+.. .|-|.|+ ++.+.+|+.+.||.+.
T Consensus 4 yln~kfgrtg~l~~------dinirgn-~e~a~~F~~s~G~~~~ 40 (157)
T PF15538_consen 4 YLNEKFGRTGDLNH------DINIRGN-REIASDFFKSQGLTEA 40 (157)
T ss_pred Hhhhhhcccccccc------ceeeccc-hHHHHHHHHHcCCCHH
Confidence 57789999999964 6999998 5778889999999543
No 86
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=24.41 E-value=2.3e+02 Score=21.83 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=36.2
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcC-----ChhHHHHHHHHHcCC
Q 039810 40 GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQG-----DQRKNVSTFLVQAGI 102 (113)
Q Consensus 40 g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQG-----D~~~~v~~~L~~~G~ 102 (113)
|+...+++=.+ ..|+.+|.++|++++.-+.....+. .-.|.+.+ .....|.++|.++|+
T Consensus 15 g~~~~~~~L~~--~~~~~~l~~~L~~kl~~a~~FF~~a--pvvld~~~~~~~~~~~~~L~~~l~~~gl 78 (239)
T PRK05177 15 GRSFLAVVLSP--EAPLDDWLARLDALIARSPGFFLGR--PVVLDLAGLAIERSQLAALLAELEARGI 78 (239)
T ss_pred CCceEEEEEeC--CCCHHHHHHHHHHHHHhChhhhCCC--eEEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444333 5689999999999987665444310 12345554 346678888888776
No 87
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=24.32 E-value=75 Score=20.98 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHhhhcccccEEEeCCCCCeEEE--EcCC-hhHHHHHHHHHcCCCC
Q 039810 62 DLKKEFCCNGTVVQDPELGQVIQ--LQGD-QRKNVSTFLVQAGIVK 104 (113)
Q Consensus 62 ~lKk~~~cggsv~~~~~~g~~I~--vQGD-~~~~v~~~L~~~G~~~ 104 (113)
.|+-.|-++||+. +|..+.-++ +.-+ ..+.+.++|.+.|++.
T Consensus 4 flrG~Fl~~Gsi~-~P~~~YhLEi~~~~~e~a~~l~~lL~~~~i~~ 48 (93)
T PF14527_consen 4 FLRGAFLACGSIS-DPKKSYHLEIRFNDEEFAEQLKELLNKFGINA 48 (93)
T ss_dssp HHHHHHHHHEEE---TTT---EEEEES-HHHHHHHHHHHHHH----
T ss_pred HHHHHHHCCeecc-CCCCceEEEEecCCHHHHHHHHHHHHHcCCCc
Confidence 3556677888885 566555343 3332 4456666777778743
No 88
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.68 E-value=65 Score=18.65 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=12.8
Q ss_pred cchHHHHHHHHhhhcc
Q 039810 53 EFSYNKILKDLKKEFC 68 (113)
Q Consensus 53 ~~dlk~lak~lKk~~~ 68 (113)
.-||+++.+.|.++|+
T Consensus 20 PPDLdel~r~l~~kl~ 35 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLG 35 (42)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4588898888888875
No 89
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=22.51 E-value=79 Score=21.70 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.9
Q ss_pred cCChhHHHHHHHHHc--CCCCCCCeEecC
Q 039810 86 QGDQRKNVSTFLVQA--GIVKKEFIKIHG 112 (113)
Q Consensus 86 QGD~~~~v~~~L~~~--G~~~~~~I~ihg 112 (113)
-=||+-.|.++|... -+++++.=+|||
T Consensus 65 G~dhisrve~~Lk~~R~~i~~ed~~KVHG 93 (101)
T PF04746_consen 65 GRDHISRVEEYLKSLRVTIEPEDLGKVHG 93 (101)
T ss_pred CCCchHHHHHHHHHhcCCCCccccccccC
Confidence 358999999999884 578888889998
No 90
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=22.49 E-value=1.9e+02 Score=21.51 Aligned_cols=55 Identities=18% Similarity=0.445 Sum_probs=29.9
Q ss_pred eeEEEEeCCCCcchHHHHHHHHhhh-cccccEEEeCCCCCeEEEEcCChhHHHHH---HHHHcCC
Q 039810 42 KSLTTVQGLKKEFSYNKILKDLKKE-FCCNGTVVQDPELGQVIQLQGDQRKNVST---FLVQAGI 102 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKk~-~~cggsv~~~~~~g~~I~vQGD~~~~v~~---~L~~~G~ 102 (113)
-.+|+..|++.+ ..+++.|.+|.. +=.-+++. |++|-|.|-.|+.+-+ +|.+..+
T Consensus 92 q~i~lk~GI~~d-~AKkIvK~IKd~klKVqa~IQ-----gd~vRVtgKkrDDLQ~viallk~~d~ 150 (160)
T PF04461_consen 92 QVIKLKQGIDQD-TAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQEVIALLKEQDL 150 (160)
T ss_dssp EEEEE--S--HH-HHHHHHHHHHHH--SEEEEEE-----TTEEEEEES-HHHHHHHHHHHHHS--
T ss_pred EEEEeecccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHHHHHHHHHHHHcccC
Confidence 578999999832 466666666532 22444554 6788888888876554 6666533
No 91
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.28 E-value=80 Score=22.34 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.4
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+.+++.|.+.|+ +++.|.+-|+
T Consensus 145 se~~~~~l~~~Gi-~~~~I~vtGi 167 (169)
T PF06925_consen 145 SEEVKEELIERGI-PPERIHVTGI 167 (169)
T ss_pred CHHHHHHHHHcCC-ChhHEEEeCc
Confidence 3678888999999 4578998874
No 92
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.19 E-value=1.1e+02 Score=17.92 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.6
Q ss_pred EEEEcC-ChhHHHHHHHHHcCC
Q 039810 82 VIQLQG-DQRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~vQG-D~~~~v~~~L~~~G~ 102 (113)
.+.++. ++.+++.+.|.+.||
T Consensus 46 ~i~v~~~~~~~~~~~~L~~~G~ 67 (69)
T cd04909 46 RISFKTQEDRERAKEILKEAGY 67 (69)
T ss_pred EEEECCHHHHHHHHHHHHHcCC
Confidence 455653 478899999999998
No 93
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=22.17 E-value=41 Score=24.99 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=8.5
Q ss_pred CCCCCCcccc
Q 039810 8 IPSAFDPFAE 17 (113)
Q Consensus 8 ~~~~~d~~~~ 17 (113)
-||+|||+..
T Consensus 7 ypGSFDPiTn 16 (159)
T COG0669 7 YPGSFDPITN 16 (159)
T ss_pred eCCCCCCCcc
Confidence 4999999985
No 94
>PF13014 KH_3: KH domain
Probab=22.07 E-value=1.3e+02 Score=16.45 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHhhhcccccEEEe---CCCCCeEEEEcC
Q 039810 60 LKDLKKEFCCNGTVVQ---DPELGQVIQLQG 87 (113)
Q Consensus 60 ak~lKk~~~cggsv~~---~~~~g~~I~vQG 87 (113)
.+.|++..+|.=.+.. .......|.|.|
T Consensus 13 I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 13 IKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred HHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 4667777555555443 112346888876
No 95
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=62 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=25.2
Q ss_pred eEEEEcCChhHHH-----HHHHHHcCCCCCCCeEecCC
Q 039810 81 QVIQLQGDQRKNV-----STFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 81 ~~I~vQGD~~~~v-----~~~L~~~G~~~~~~I~ihg~ 113 (113)
..+.|=|.-.-+. -.||...|.|.+++|-+||.
T Consensus 300 at~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHgh 337 (578)
T KOG0436|consen 300 ATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGH 337 (578)
T ss_pred ceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEeee
Confidence 4677777644333 46899999999999999993
No 96
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=21.94 E-value=1.7e+02 Score=18.01 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=28.6
Q ss_pred hHHHHHHHHhhhccc-ccEEEeCCCCCeEEEEcCChhHHH
Q 039810 55 SYNKILKDLKKEFCC-NGTVVQDPELGQVIQLQGDQRKNV 93 (113)
Q Consensus 55 dlk~lak~lKk~~~c-ggsv~~~~~~g~~I~vQGD~~~~v 93 (113)
++.++++.+++.++| .-.+...+..|..|+|--+...++
T Consensus 19 ~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~ 58 (92)
T PF05190_consen 19 ELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKL 58 (92)
T ss_dssp HHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGS
T ss_pred HHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccC
Confidence 578899999999999 666766666678888877764443
No 97
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=21.88 E-value=3.3e+02 Score=22.29 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=42.9
Q ss_pred cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCCCCCCeEec
Q 039810 53 EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIVKKEFIKIH 111 (113)
Q Consensus 53 ~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD--~~~~v~~~L~~~G~~~~~~I~ih 111 (113)
-.+.+++++.++..+.-.|++.-++.. ..+.|.|. ..+++.++|.+.-.+. .||.|.
T Consensus 100 ya~A~el~~~l~~ll~~~g~v~~d~~t-NsLiv~~~~~~~~~i~~li~~lD~~~-~QV~Ie 158 (386)
T PRK10560 100 YADAGELAKAGEKLLSAKGSMTVDKRT-NRLLLRDNKTALSALEQWVAQMDLPV-GQVELA 158 (386)
T ss_pred CCCHHHHHhhhcccccCCcEEEEEcCC-CEEEEEcCHHHHHHHHHHHHHhCCCC-ceEEEE
Confidence 457889999998888888888765544 37888887 5568888888877754 577764
No 98
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=21.87 E-value=44 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCeEEEEcCC-hhHHHHHHHHHcCCCC
Q 039810 79 LGQVIQLQGD-QRKNVSTFLVQAGIVK 104 (113)
Q Consensus 79 ~g~~I~vQGD-~~~~v~~~L~~~G~~~ 104 (113)
.|+.|.+.|. ++.+|+++|.+.++|+
T Consensus 8 ~gdri~~~g~~~~k~lKk~~~e~kIP~ 34 (74)
T PF11734_consen 8 PGDRIRPAGRGGSKKLKKLFQEAKIPP 34 (74)
T ss_dssp TTSEEEBTTSSSEEEHHHHHHHCT--H
T ss_pred CCCEEEECCCCCCchHHHHHHHcCCCH
Confidence 4667888666 5799999999999975
No 99
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=21.70 E-value=2.7e+02 Score=20.94 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 51 KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 51 ~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
....+..++++.+++.....=...+...+.=.|++||+.. .|++
T Consensus 6 ~~~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~-eike 49 (190)
T PF09840_consen 6 RDDEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEK-EIKE 49 (190)
T ss_pred CChHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChH-HHHH
Confidence 3456788888888877332222122222334899999987 4444
No 100
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=21.40 E-value=3.3e+02 Score=20.09 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=39.4
Q ss_pred cCCeeEEEEeCCCCcchHHHHHHHHhh---hcccccEEEeCCCCCeEEE---EcCChhHHHHHHHHHcCC
Q 039810 39 NGRKSLTTVQGLKKEFSYNKILKDLKK---EFCCNGTVVQDPELGQVIQ---LQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 39 ~g~K~VT~V~Gl~~~~dlk~lak~lKk---~~~cggsv~~~~~~g~~I~---vQGD~~~~v~~~L~~~G~ 102 (113)
..+-.+++.+|=.+. ....+++.|.- ..+|+|++.-+...+..|. +.-+....+.+++.+.++
T Consensus 34 ~~G~~~~iaTGR~~~-~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~~~~~~~~ 102 (272)
T PRK10530 34 EAGYKVIIVTGRHHV-AIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIEMLDEHQI 102 (272)
T ss_pred HCCCEEEEEcCCChH-HHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHHHHHhCCc
Confidence 344689999998732 35566677753 3678888776544444332 333566677777776654
No 101
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=20.91 E-value=2.1e+02 Score=17.40 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=12.1
Q ss_pred EEEEcCChhHHHHHHHHHcCCCC
Q 039810 82 VIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~~~ 104 (113)
.+...|-..+.=...|..+|+..
T Consensus 41 ~Li~~Gk~L~D~~~~L~~~gi~~ 63 (71)
T cd01796 41 QLIYNGRELVDNKRLLALYGVKD 63 (71)
T ss_pred EEEECCeEccCCcccHHHcCCCC
Confidence 45556665543223466677743
No 102
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=20.68 E-value=2.6e+02 Score=24.33 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=33.6
Q ss_pred HHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeEe
Q 039810 60 LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 60 ak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~i 110 (113)
++.+..++|++-+|-. .++|.+.||-+..|.+.|..+=-...++|++
T Consensus 122 L~~MA~~lGAs~~vLr----ek~v~~~~~~~R~v~EVLVRKvPd~Qqfiev 168 (591)
T KOG1143|consen 122 LRTMAQALGASMVVLR----EKDVTVKGSSRRTVVEVLVRKVPDSQQFIEV 168 (591)
T ss_pred HHHHHHHhCCceEEEE----eeeeeccCCCcchhhhhhhhhCCCcccceEE
Confidence 3455567777777764 4789999999999999998753333445655
No 103
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=20.67 E-value=91 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCeeEEEEeCCC-CcchHHHHHHHHhhhcc
Q 039810 40 GRKSLTTVQGLK-KEFSYNKILKDLKKEFC 68 (113)
Q Consensus 40 g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~ 68 (113)
-++.||+|+||. ....|.-+-++|....+
T Consensus 68 ~G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~ 97 (156)
T COG2080 68 EGAEITTIEGLAKKDGGLHPVQQAFLEHDA 97 (156)
T ss_pred CCCeEEEeecccCCCCCcCHHHHHHHHcCC
Confidence 357999999999 65666777777776543
No 104
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=20.46 E-value=2.2e+02 Score=17.30 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=29.1
Q ss_pred cchHHHHHHHHhhhcc--------------------cccEEEeCCCCCeEEEEcCC--hhHHHHHHHHH
Q 039810 53 EFSYNKILKDLKKEFC--------------------CNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQ 99 (113)
Q Consensus 53 ~~dlk~lak~lKk~~~--------------------cggsv~~~~~~g~~I~vQGD--~~~~v~~~L~~ 99 (113)
-.+.+++++.|+..++ -++++.-++.. ..|.|.|. ..+.|.+++.+
T Consensus 8 ~~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~t-Nsliv~g~~~~~~~i~~li~~ 75 (82)
T PF03958_consen 8 YASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSGRIVADERT-NSLIVRGTPEDLEQIRELIKQ 75 (82)
T ss_dssp SS-HHHHHHHHHHHH----------------S-HHHTTTEEEEECTT-TEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhhhcccccccccccccccCCCCCeEEEEECCC-CEEEEEeCHHHHHHHHHHHHH
Confidence 3478889999998884 34455544333 37778887 44567777655
No 105
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.46 E-value=2.2e+02 Score=22.54 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=47.7
Q ss_pred cCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCC--eEEEEcCC---hhHHHHH---HHHHcCCCCCCCeE
Q 039810 39 NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELG--QVIQLQGD---QRKNVST---FLVQAGIVKKEFIK 109 (113)
Q Consensus 39 ~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g--~~I~vQGD---~~~~v~~---~L~~~G~~~~~~I~ 109 (113)
.|++-|-++.|+. ..-|.+.|++.|... +=.+++-.-|+.| .+..++-. +-+++.+ .|.+.|++ .|.
T Consensus 13 ~G~~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~---eI~ 88 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYD---EIA 88 (243)
T ss_pred cCCEEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCC---eEE
Confidence 4778999999999 888999999999988 5555555555544 24444443 4444444 56778882 376
Q ss_pred ecC
Q 039810 110 IHG 112 (113)
Q Consensus 110 ihg 112 (113)
|-|
T Consensus 89 v~G 91 (243)
T COG1647 89 VVG 91 (243)
T ss_pred EEe
Confidence 655
No 106
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=97 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++.. +|.+-|+
T Consensus 141 ~aV~~~L~~~Gv~~~-~i~~~G~ 162 (190)
T COG2885 141 EAVADYLVSQGVVAD-RISTVGY 162 (190)
T ss_pred HHHHHHHHHcCCCcc-cEEEEEc
Confidence 578899999999665 8887664
No 107
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=20.38 E-value=2.3e+02 Score=17.62 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh---hHHHHHHHHH
Q 039810 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ---RKNVSTFLVQ 99 (113)
Q Consensus 56 lk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~---~~~v~~~L~~ 99 (113)
..+|.|.+.+.|-+ ..|+.-+.+...+.+.|-. ++.|-++|.+
T Consensus 10 ~~EL~kRl~~~yPd-~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe 55 (65)
T PF06183_consen 10 ESELTKRLHRQYPD-AEVRVRPGSANGLSVSGGKKDDKERIEEILQE 55 (65)
T ss_dssp HHHHHHHHHHH-SS--EEEEEEESS-EEEEES--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-ceEeeeecccCccccCCcCchHHHHHHHHHHH
Confidence 46788899999877 4444444555678888865 5566667665
No 108
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.15 E-value=1.5e+02 Score=17.31 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred EEEEcCChhHHHHHHHHHcCC
Q 039810 82 VIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~ 102 (113)
.|.+.++-.+.+.+.|.+.||
T Consensus 46 ~i~v~~~~~~~~~~~L~~~G~ 66 (72)
T cd04883 46 VFRVQTMNPRPIIEDLRRAGY 66 (72)
T ss_pred EEEEecCCHHHHHHHHHHCCC
Confidence 677777788899999999998
No 109
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.05 E-value=73 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.5
Q ss_pred CeEEEEc---CChhHHHHHHHHH-cCCCCCCC
Q 039810 80 GQVIQLQ---GDQRKNVSTFLVQ-AGIVKKEF 107 (113)
Q Consensus 80 g~~I~vQ---GD~~~~v~~~L~~-~G~~~~~~ 107 (113)
+++|++- -|..++|++-.++ +|+||.++
T Consensus 10 ~KeIeidIep~DkverIKErvEEkeGIPp~qq 41 (70)
T KOG0005|consen 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41 (70)
T ss_pred cceEEEeeCcchHHHHHHHHhhhhcCCCchhh
Confidence 4556554 4677888887766 59987655
No 110
>PF08601 PAP1: Transcription factor PAP1; InterPro: IPR013910 The transcription factor Pap1 regulates antioxidant-gene transcription in response to H2O2 []. This region is cysteine rich. Alkylation of cysteine residues following treatment with a cysteine alkylating agent can mask the accessibility of the nuclear exporter Crm1, triggering nuclear accumulation and Pap1 dependent transcriptional expression []. ; PDB: 1SSE_B.
Probab=20.04 E-value=51 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=14.8
Q ss_pred CcchHHHHHHHHhhhcccccE
Q 039810 52 KEFSYNKILKDLKKEFCCNGT 72 (113)
Q Consensus 52 ~~~dlk~lak~lKk~~~cggs 72 (113)
.++|+..||.+|++|--|+++
T Consensus 311 ~~~did~lc~el~~kakcs~~ 331 (347)
T PF08601_consen 311 GEIDIDGLCSELKKKAKCSES 331 (347)
T ss_dssp SS--HHHHHHHHTTT--EETT
T ss_pred cccchHHHHHHHHHhCccCCC
Confidence 368999999999999888765
Done!