Query 039810
Match_columns 113
No_of_seqs 135 out of 849
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 100.0 4.4E-40 1.5E-44 227.4 12.6 108 1-113 1-108 (108)
2 2if1_A EIF1, SUI1; translation 100.0 6.8E-40 2.3E-44 231.9 8.2 111 1-113 14-126 (126)
3 2xzm_F EIF1; ribosome, transla 100.0 2.5E-35 8.6E-40 201.6 11.3 87 27-113 15-101 (101)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 1.2E-25 4E-30 156.9 5.6 79 23-108 25-106 (116)
5 1gxu_A Hydrogenase maturation 94.3 0.25 8.5E-06 32.0 7.3 54 46-101 12-65 (91)
6 1urr_A CG18505 protein; acylph 93.4 0.36 1.2E-05 31.7 7.0 56 46-101 16-73 (102)
7 2gv1_A Probable acylphosphatas 93.3 0.2 6.8E-06 32.4 5.4 60 47-107 10-71 (92)
8 1ulr_A Putative acylphosphatas 92.4 0.68 2.3E-05 29.5 7.0 55 46-101 7-63 (88)
9 2lxf_A Uncharacterized protein 92.3 0.39 1.3E-05 32.9 6.1 54 47-101 40-95 (121)
10 2vh7_A Acylphosphatase-1; hydr 92.3 0.57 1.9E-05 30.5 6.7 55 47-101 14-70 (99)
11 2bjd_A Acylphosphatase; hypert 92.2 0.44 1.5E-05 31.4 6.0 60 46-107 19-80 (101)
12 2fhm_A Probable acylphosphatas 91.4 0.87 3E-05 29.1 6.7 52 46-98 7-58 (91)
13 1k8b_A EIF-2-beta, probable tr 89.8 0.33 1.1E-05 28.7 3.3 43 38-87 4-51 (52)
14 2d74_B Translation initiation 88.3 0.58 2E-05 33.2 4.2 58 28-95 32-94 (148)
15 3trg_A Acylphosphatase; fatty 87.3 2.7 9.2E-05 27.3 6.8 53 46-99 17-69 (98)
16 1aps_A Acylphosphatase; hydrol 86.7 0.34 1.2E-05 31.6 2.1 52 47-99 13-64 (98)
17 1nee_A EIF-2-beta, probable tr 86.3 0.27 9.3E-06 34.5 1.5 50 39-95 38-92 (138)
18 1w2i_A Acylphosphatase; hydrol 85.7 3.5 0.00012 26.3 6.6 53 46-99 9-61 (91)
19 2e9h_A EIF-5, eukaryotic trans 77.9 2.4 8.1E-05 30.3 3.8 63 29-95 26-93 (157)
20 3cw2_K Translation initiation 61.2 0.34 1.2E-05 34.0 -3.7 53 37-95 36-93 (139)
21 4hhu_A OR280; engineered prote 59.0 39 0.0013 23.5 6.6 61 39-99 39-103 (170)
22 2g2k_A EIF-5, eukaryotic trans 57.5 6 0.00021 28.5 2.4 64 28-95 18-86 (170)
23 2jvf_A De novo protein M7; tet 54.8 38 0.0013 21.5 7.5 73 31-112 8-87 (96)
24 3vth_A Hydrogenase maturation 51.4 31 0.001 30.0 6.2 55 46-101 15-71 (761)
25 3a4r_A Nfatc2-interacting prot 40.4 44 0.0015 20.2 4.1 76 27-112 4-79 (79)
26 3oon_A Outer membrane protein 36.2 22 0.00074 23.0 2.3 23 91-113 75-97 (123)
27 2hqs_H Peptidoglycan-associate 35.9 21 0.00073 23.1 2.3 23 90-113 63-85 (118)
28 2aiz_P Outer membrane protein 32.9 25 0.00086 23.4 2.3 23 90-113 87-109 (134)
29 2y3m_A Emhofq, protein transpo 32.8 81 0.0028 21.4 5.0 64 43-109 105-174 (175)
30 3hyi_A Protein DUF199/WHIA; la 31.8 1.6E+02 0.0056 22.5 7.0 49 55-104 107-159 (295)
31 3cyp_B Chemotaxis protein MOTB 31.4 28 0.00094 23.2 2.3 22 91-113 67-88 (138)
32 4g9i_A Hydrogenase maturation 31.2 66 0.0022 27.9 5.1 44 46-89 7-50 (772)
33 2kgw_A Outer membrane protein 29.8 26 0.00089 22.9 1.9 23 90-113 81-103 (129)
34 2nmm_A 14 kDa phosphohistidine 28.7 1.2E+02 0.0041 20.8 5.2 62 25-87 27-102 (135)
35 2hw4_A 14 kDa phosphohistidine 28.3 1.3E+02 0.0043 21.0 5.3 62 25-87 36-111 (144)
36 2dsm_A Hypothetical protein YQ 27.8 45 0.0015 20.7 2.6 32 68-102 24-58 (72)
37 3dzc_A UDP-N-acetylglucosamine 27.5 1.3E+02 0.0043 23.0 5.7 56 39-104 23-79 (396)
38 2lx9_A Ferrous iron transport 27.2 1E+02 0.0036 18.7 4.3 29 82-110 11-39 (83)
39 3e19_A FEOA; transcriptional r 27.1 1E+02 0.0034 18.1 4.2 27 82-110 18-44 (77)
40 1k8r_B Protein kinase BYR2; si 26.5 1E+02 0.0035 20.4 4.2 32 66-104 5-36 (110)
41 3ldt_A Outer membrane protein, 26.0 59 0.002 22.4 3.3 22 91-113 112-133 (169)
42 4erh_A Outer membrane protein 25.4 28 0.00095 23.2 1.4 22 91-113 82-103 (148)
43 1kkl_H Phosphocarrier protein 24.3 1.1E+02 0.0039 19.5 4.2 16 82-97 74-89 (100)
44 1sse_B AP-1 like transcription 24.2 27 0.00091 22.5 1.0 26 47-72 41-68 (86)
45 2f9f_A First mannosyl transfer 24.2 1.5E+02 0.0052 19.2 5.5 62 40-113 22-85 (177)
46 2h3j_A Hypothetical protein PA 23.5 98 0.0033 17.8 3.5 29 82-110 12-40 (75)
47 1r1m_A Outer membrane protein 23.4 46 0.0016 23.0 2.3 22 91-113 73-94 (164)
48 3s06_A Motility protein B; pep 22.9 38 0.0013 23.1 1.7 23 90-113 94-116 (166)
49 2diu_A KIAA0430 protein; struc 22.4 98 0.0034 20.0 3.6 52 46-99 13-65 (96)
50 2y9j_Y Lipoprotein PRGK, prote 22.3 1.9E+02 0.0066 20.1 5.4 59 46-106 3-61 (170)
51 2v8q_B 5'-AMP-activated protei 21.6 1.3E+02 0.0046 19.1 4.0 22 26-47 61-82 (87)
52 3kyd_D Small ubiquitin-related 20.7 1.7E+02 0.0059 19.3 4.6 43 24-69 34-76 (115)
53 3dhx_A Methionine import ATP-b 20.4 94 0.0032 19.7 3.2 21 82-102 68-90 (106)
54 2k1s_A Inner membrane lipoprot 20.3 50 0.0017 22.1 1.9 22 91-113 92-113 (149)
55 3s0y_A Motility protein B; pep 20.3 57 0.0019 22.9 2.3 23 90-113 121-143 (193)
56 2nlv_A XISI protein-like; XISI 20.2 57 0.0019 21.8 2.1 29 81-110 67-96 (112)
57 2k5l_A FEOA; structure, NESG, 20.1 1.5E+02 0.0051 17.6 4.1 27 82-110 15-41 (81)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-40 Score=227.43 Aligned_cols=108 Identities=54% Similarity=0.952 Sum_probs=101.4
Q ss_pred CCccccCCCCCCCcccccccCCCCCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCC
Q 039810 1 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG 80 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g 80 (113)
|| ++|+. +||||+++ .|++++..++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||+++|+++
T Consensus 1 m~-~~~~~--~~dpf~~~--~~~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g 75 (108)
T 2ogh_A 1 MS-IENLK--SFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMG 75 (108)
T ss_dssp CC-SSCCS--CCCCCCCC--CCCCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSS
T ss_pred Cc-ccccC--CCCccccc--cccccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCc
Confidence 77 89987 79999998 345689999999999999999999999999988899999999999999999999998888
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 81 QVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 81 ~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+|+||||||++|.++|.++|+.+++||+||||
T Consensus 76 ~~I~iQGD~r~~v~~~L~~~g~~~~~~I~vhg~ 108 (108)
T 2ogh_A 76 EIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108 (108)
T ss_dssp CEEEEESSCHHHHHHHHHHHHTSCCSCEEECCC
T ss_pred eEEEEcCCHHHHHHHHHHHcCCCCHHHEEEcCC
Confidence 899999999999999999999988899999997
No 2
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=100.00 E-value=6.8e-40 Score=231.85 Aligned_cols=111 Identities=56% Similarity=0.992 Sum_probs=103.7
Q ss_pred CCccccCCCCCCCcccccccCC--CCCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCC
Q 039810 1 MSEFDTQIPSAFDPFAEANAED--SGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE 78 (113)
Q Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~ 78 (113)
|+.++||. +||||+++.+++ ..+++.++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||+++|+
T Consensus 14 ~~~~~~~~--~fdpfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e 91 (126)
T 2if1_A 14 MSAIQNLH--SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCCC--CCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred hhhcccCC--CCCchhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCC
Confidence 67899976 799999988766 35788999999999999999999999999888999999999999999999999888
Q ss_pred CCeEEEEcCChhHHHHHHHHHcCCCCCCCeEecCC
Q 039810 79 LGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 79 ~g~~I~vQGD~~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
++.+|+||||||++|.++|.++||++++||+||||
T Consensus 92 ~g~~I~IQGD~r~~I~~~L~~~G~~~~~~I~vhgf 126 (126)
T 2if1_A 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CccEEEEcCCHHHHHHHHHHHcCCCChhhEEeeCC
Confidence 88999999999999999999999988999999997
No 3
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=100.00 E-value=2.5e-35 Score=201.57 Aligned_cols=87 Identities=46% Similarity=0.770 Sum_probs=83.9
Q ss_pred CCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCC
Q 039810 27 SKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE 106 (113)
Q Consensus 27 ~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~ 106 (113)
..++|+|++++|+|||.||+|+||++++|+++|||+||++|||||||+++|+++.+|+||||||++|.++|.++|+++++
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~G~~~~~ 94 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVD 94 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHHSSSCTT
T ss_pred CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHcCCCCHH
Confidence 56799999999999999999999999999999999999999999999999888899999999999999999999998889
Q ss_pred CeEecCC
Q 039810 107 FIKIHGF 113 (113)
Q Consensus 107 ~I~ihg~ 113 (113)
||+||||
T Consensus 95 ~I~vhg~ 101 (101)
T 2xzm_F 95 NITIHGI 101 (101)
T ss_dssp TEEECCC
T ss_pred HEEEcCC
Confidence 9999997
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.92 E-value=1.2e-25 Score=156.94 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEEEEeecCC--eeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 23 SGAGSKDYVHIRVQQRNGR--KSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 23 ~~~~~~~~I~I~~e~R~g~--K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.++...++|+|+++ |+|| |.||+|+||+ +++|+++|||+||++|||||||++ ++|+||||||++|.+||.+
T Consensus 25 ~~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~-----~~IeiQGD~r~~i~~~L~~ 98 (116)
T 1d1r_A 25 VRPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEA 98 (116)
T ss_dssp ---CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC-----CEEEEeCcHHHHHHHHHHH
Confidence 35566899999998 6555 9999999999 899999999999999999999984 5999999999999999999
Q ss_pred cCCCCCCCe
Q 039810 100 AGIVKKEFI 108 (113)
Q Consensus 100 ~G~~~~~~I 108 (113)
+|| +..+|
T Consensus 99 ~G~-~vk~i 106 (116)
T 1d1r_A 99 KGM-KVKLA 106 (116)
T ss_dssp HTC-EECCC
T ss_pred cCC-Cccee
Confidence 998 33344
No 5
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=94.27 E-value=0.25 Score=31.96 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=42.9
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G 101 (113)
.|+|.=.++-....+..+.++++-.|.|...+++ -+|++||+. +.+.++|.+.+
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~ 65 (91)
T 1gxu_A 12 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHC 65 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTC
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCC
Confidence 3566556667777778888888899999877666 799999999 88888887765
No 6
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=93.43 E-value=0.36 Score=31.72 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
.|+|.=.++-....+..+.++++-.|.|...+++.-+|++||+. .+...++|...|
T Consensus 16 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g 73 (102)
T 1urr_A 16 EIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 73 (102)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC
T ss_pred EEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 36666567777788888888888999998776666799999985 455666666555
No 7
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=93.27 E-value=0.2 Score=32.36 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=36.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEF 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G~~~~~~ 107 (113)
|+|.=.++-+...+..+.++++-.|.|...+++.-+|++||+. .+...++|...| |+...
T Consensus 10 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~g-P~~a~ 71 (92)
T 2gv1_A 10 VYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG-PRSAR 71 (92)
T ss_dssp EEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTS-STTSE
T ss_pred EEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccC-CCceE
Confidence 3443333333344445555567889998776665799999985 445566664556 55433
No 8
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=92.40 E-value=0.68 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=41.9
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
.|+|.=.++-+...+..+.++++-.|.|...+++.=+|++||+. .+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~g 63 (88)
T 1ulr_A 7 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QG 63 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HC
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hC
Confidence 36666567778888888888899999998776666799999985 455666665 45
No 9
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=92.31 E-value=0.39 Score=32.93 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=38.0
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
|+|.-.++-+...+..+.++++-.|.|...+++.-+|++||+- .+.+.++|. .|
T Consensus 40 V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~-~g 95 (121)
T 2lxf_A 40 VTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH-KG 95 (121)
T ss_dssp EEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH-HC
T ss_pred EEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH-hC
Confidence 5565556666677777777788999999877666799999973 334555553 46
No 10
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=92.31 E-value=0.57 Score=30.53 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=41.5
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
|+|.=.++-....+..+.++++-.|.|...+++.=+|++||+. .+...++|.+.|
T Consensus 14 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~ 70 (99)
T 2vh7_A 14 IFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRG 70 (99)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 6665567777788888888889999998776665799999985 455666666555
No 11
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=92.18 E-value=0.44 Score=31.37 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=42.8
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEF 107 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~--~G~~~~~~ 107 (113)
.|+|.-.++-+...+..+.++++-.|.|...+++.-+|++||+.. .|.+|+.. .| |+...
T Consensus 19 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~g-P~~A~ 80 (101)
T 2bjd_A 19 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLERIKQG-PPAAE 80 (101)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHHHTTC-STTCE
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhC-CCccE
Confidence 366766777788888888888899999987776667999999853 34444433 46 55433
No 12
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=91.37 E-value=0.87 Score=29.13 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=38.9
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~ 98 (113)
.|+|.=.++-+...+..+.++++-.|.|...+++.-+|++||+.. .|.+|+.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~ 58 (91)
T 2fhm_A 7 IVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVE 58 (91)
T ss_dssp EEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHH
Confidence 366665677788888888888999999987776667999999853 3444443
No 13
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=89.85 E-value=0.33 Score=28.67 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=34.6
Q ss_pred ecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcC
Q 039810 38 RNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQG 87 (113)
Q Consensus 38 R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQG 87 (113)
|-|+| |++.+|. . .=+++-++|.|.+.+|+.|++. ++...|+|
T Consensus 4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G 51 (52)
T 1k8b_A 4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-----GGRLILQR 51 (52)
T ss_dssp EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-----TTEEEEEC
T ss_pred EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-----CCEEEEeC
Confidence 55777 9999987 2 2368999999999999999996 35677777
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=88.26 E-value=0.58 Score=33.20 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 28 KDYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
.++..+.++ |+| |++.||. . .=+++-+.|.|...+|+.|++. ++...|+|.+..+-.+
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~ 94 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIA 94 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHH
Confidence 334444443 654 9999987 2 2358889999999999999996 3689999998775544
No 15
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=87.26 E-value=2.7 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=39.5
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.-.++-+...+..+.++++-.|.|...+++.-+|++||+ .+.|.+|+..
T Consensus 17 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~ 69 (98)
T 3trg_A 17 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEW 69 (98)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHH
Confidence 3566556777788888888888899999877666679999998 3445555544
No 16
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=86.71 E-value=0.34 Score=31.58 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=34.1
Q ss_pred EeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
|+|.=.++-....+..+.++++-.|.|...+++.-+|++||+.. .|.+|+..
T Consensus 13 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~ 64 (98)
T 1aps_A 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHS
T ss_pred EEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 55554555555556666666778899986655546999999853 35555544
No 17
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=86.29 E-value=0.27 Score=34.47 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=39.5
Q ss_pred cCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 39 NGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 39 ~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
-|+| |++.||. . .=+++-+.|.|...+|+.|++. ++...|+|.|..+-.+
T Consensus 38 eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~ 92 (138)
T 1nee_A 38 QGNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-----GGRAILQGKFTHFLIN 92 (138)
T ss_dssp ETTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-----TTTEEEESSCSSSHHH
T ss_pred ECCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHH
Confidence 3766 9999997 2 2369999999999999999996 3578999998764433
No 18
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=85.68 E-value=3.5 Score=26.29 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=38.7
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+|.=.++-+...+..+.++++-.|.|...+++.-+|++||+... |.+|+..
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~ 61 (91)
T 1w2i_A 9 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGW 61 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHH
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHH
Confidence 3666656777778888888888899999877666679999998532 4444433
No 19
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.86 E-value=2.4 Score=30.31 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=44.1
Q ss_pred CeEEEEEEeecCCeeEEEEeCCC---C--cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 29 DYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
+++.+.+|= +|+=.-|++.+|. . .=+++-+.|.|...+|+.|++.+. ++...|+|.|..+-.+
T Consensus 26 P~~~v~~eG-~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~---~~rlii~G~~~~~~i~ 93 (157)
T 2e9h_A 26 PRLIAKVEG-KGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQ 93 (157)
T ss_dssp ECCCEEECS-SSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETT---TTEEEEEBCCCHHHHH
T ss_pred CCCeEEEec-cCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHH
Confidence 344455442 2333568888887 2 235889999999999999999631 4689999998775444
No 20
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=61.16 E-value=0.34 Score=34.02 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=40.2
Q ss_pred eecCCeeEEEEeCCC---Cc--chHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 37 QRNGRKSLTTVQGLK---KE--FSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 37 ~R~g~K~VT~V~Gl~---~~--~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
++-|+| |++.||. .. =+++-+.|.|...+|+.|++.. ++...|+|.|..+-.+
T Consensus 36 ~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~----~~rlii~G~~~~~~i~ 93 (139)
T 3cw2_K 36 LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD----KGELVIQGKFSSQVIN 93 (139)
T ss_dssp CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS----SCCCTTTCSCCSCCSC
T ss_pred EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC----CCeEEEEeeeCHHHHH
Confidence 345766 9999998 22 3588899999999999999953 4578889988764333
No 21
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=59.00 E-value=39 Score=23.50 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=41.6
Q ss_pred cCCeeEEEEeCCCC--cchHHHHHHHHhhhcccccEEEeCCCC-C-eEEEEcCChhHHHHHHHHH
Q 039810 39 NGRKSLTTVQGLKK--EFSYNKILKDLKKEFCCNGTVVQDPEL-G-QVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 39 ~g~K~VT~V~Gl~~--~~dlk~lak~lKk~~~cggsv~~~~~~-g-~~I~vQGD~~~~v~~~L~~ 99 (113)
.|+.-+.+|+|.+. .-++.+-|..|++.|.-..+..--.++ | -.|.+.||-.+.+...|.+
T Consensus 39 ~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 39 SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 58888999999983 234555556688887666555432222 2 3789999998887776655
No 22
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=57.49 E-value=6 Score=28.53 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCeEEEEEEeecCCeeEEEEeCCCC-----cchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 039810 28 KDYVHIRVQQRNGRKSLTTVQGLKK-----EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~~-----~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~ 95 (113)
.+++.+.+|=+ |+=.-|+|.+|.. .=+++-+.|.|...||+.|++.. .++...|+|.|.....+
T Consensus 18 mP~~~v~~EG~-gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~---~~~rliinG~~~~~~i~ 86 (170)
T 2g2k_A 18 MPRLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV---KNDRYIVNGSHEANKLQ 86 (170)
T ss_dssp CCCCCCEEESC-TTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECT---TTCCEEEEBCCCHHHHH
T ss_pred CCCCeEEEecc-CCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecC---CCCEEEEEeeeCHHHHH
Confidence 44555666633 3225577888761 22467778899999999999852 13579999998775554
No 23
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=54.77 E-value=38 Score=21.48 Aligned_cols=73 Identities=18% Similarity=0.381 Sum_probs=43.7
Q ss_pred EEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHH-------HHHHHHcCCC
Q 039810 31 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV-------STFLVQAGIV 103 (113)
Q Consensus 31 I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v-------~~~L~~~G~~ 103 (113)
|.|++ +|-| ..+.+=--...+-+++..+.+|.|.++-.|.-. -+|.+.....+.. ..+|.+.||
T Consensus 8 itiki-qrdg-qeieidirvstgkeleralqelekalaragarn------vqitisaendeqakelleliarllqklgy- 78 (96)
T 2jvf_A 8 ITIKI-QRDG-QEIEIDIRVSTGKELERALQELEKALARAGARN------VQITISAENDEQAKELLELIARLLQKLGY- 78 (96)
T ss_dssp EEEEE-EETT-EEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSE------EEEEEECSSHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEE-eeCC-eEEEEEEEEcccHHHHHHHHHHHHHHHhccccc------eEEEEEecChHHHHHHHHHHHHHHHHhCC-
Confidence 44444 3444 444433234456678888888888887777643 2677776654443 345566799
Q ss_pred CCCCeEecC
Q 039810 104 KKEFIKIHG 112 (113)
Q Consensus 104 ~~~~I~ihg 112 (113)
+.-|+.+.|
T Consensus 79 kdinvrvng 87 (96)
T 2jvf_A 79 KDINVRVNG 87 (96)
T ss_dssp SEEEEEEET
T ss_pred CceEEEEcC
Confidence 555677766
No 24
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=51.45 E-value=31 Score=30.03 Aligned_cols=55 Identities=9% Similarity=0.260 Sum_probs=42.3
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G 101 (113)
.|+|.-.++-+...+..+-++++-.|.|...+++ -+|++||+. .+...++|.+.|
T Consensus 15 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~ 71 (761)
T 3vth_A 15 NIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENP 71 (761)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCC
Confidence 4677667788888889999999999999876654 799999984 345555666555
No 25
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=40.44 E-value=44 Score=20.16 Aligned_cols=76 Identities=13% Similarity=0.283 Sum_probs=46.9
Q ss_pred CCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCC
Q 039810 27 SKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE 106 (113)
Q Consensus 27 ~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~ 106 (113)
+...|.|++....|++.+++= +...--+++|...+..+.++.-.- -.+...|+.... -+-..+.++...+
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~--i~~~t~l~kl~~~y~~~~gi~~~~-------~rf~fdG~~l~~-~~Tp~~l~medgD 73 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEIS--LSPDSPLKVLMSHYEEAMGLSGHK-------LSFFFDGTKLSG-KELPADLGLESGD 73 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEE--ECTTSCHHHHHHHHHHHHTCTTCC-------CEEEETTEECCS-CCCHHHHTCCTTC
T ss_pred CCCEEEEEEEeCCCCEEEEEE--ECCCChHHHHHHHHHHHhCCCccc-------EEEEECCEEcCC-CCCHHHcCCCCCC
Confidence 456789998776675344332 333445888888888887765321 246666664321 1345566777777
Q ss_pred CeEecC
Q 039810 107 FIKIHG 112 (113)
Q Consensus 107 ~I~ihg 112 (113)
.|.+||
T Consensus 74 ~Idv~~ 79 (79)
T 3a4r_A 74 LIEVWG 79 (79)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 787775
No 26
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=36.16 E-value=22 Score=22.97 Aligned_cols=23 Identities=17% Similarity=0.540 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++.++.|.+-|+
T Consensus 75 ~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 75 RAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCchHeEEEEEE
Confidence 67899999999964677887663
No 27
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=35.94 E-value=21 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+.|+++|.+.|++ ++.|.+-|+
T Consensus 63 A~aV~~~L~~~Gi~-~~ri~~~g~ 85 (118)
T 2hqs_H 63 ANAVKMYLQGKGVS-ADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEEEC
T ss_pred HHHHHHHHHHcCCC-HHHEEEEEe
Confidence 45789999999995 467887664
No 28
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=32.94 E-value=25 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|++ ++.|.+.|+
T Consensus 87 A~aV~~~L~~~Gi~-~~ri~~~g~ 109 (134)
T 2aiz_P 87 ADAVKGYLAGKGVD-AGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEEEC
T ss_pred HHHHHHHHHHcCCC-HHHEEEEEE
Confidence 45788999999995 467887664
No 29
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=32.77 E-value=81 Score=21.37 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.9
Q ss_pred eEEEEeCCCCcchHHHHHHHHh----hhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCeE
Q 039810 43 SLTTVQGLKKEFSYNKILKDLK----KEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEFIK 109 (113)
Q Consensus 43 ~VT~V~Gl~~~~dlk~lak~lK----k~~~cggsv~~~~~~g~~I~vQGD~--~~~v~~~L~~~G~~~~~~I~ 109 (113)
.+|.+--|. -.+.+++++.|+ ..++-.|++.-++..+ .|.|.|.. .+++.++|...-.|. .+|.
T Consensus 105 ~~~~v~~L~-y~~a~~~~~~l~~~~~~l~~~~g~v~~d~~tN-~liv~~~~~~i~~i~~li~~lD~p~-~QV~ 174 (175)
T 2y3m_A 105 LNTATIKLH-FAKASEVMKSLTGGSGSLLSPNGSITFDDRSN-LLLIQDEPRSVRNIKKLIKELDKPI-EQLE 174 (175)
T ss_dssp CEEEEEECS-SSCHHHHHHHHHCSSSCSSCTTCEEEEETTTT-EEEEEECHHHHHHHHHHHHHHCC-------
T ss_pred cEEEEEEEe-CCCHHHHHHHHhhCcccccCCCceEEEECCCC-EEEEEcCHHHHHHHHHHHHHhCCCh-hhCc
Confidence 455553444 447899999999 7777778888665444 88999884 468888888866643 3443
No 30
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=31.79 E-value=1.6e+02 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhhcccccEEEeCCCCCe--EEEEcCC-hhHHHHHHH-HHcCCCC
Q 039810 55 SYNKILKDLKKEFCCNGTVVQDPELGQ--VIQLQGD-QRKNVSTFL-VQAGIVK 104 (113)
Q Consensus 55 dlk~lak~lKk~~~cggsv~~~~~~g~--~I~vQGD-~~~~v~~~L-~~~G~~~ 104 (113)
+.......|+-.|-++|||. +|+.+. ||...+. +.+.+.++| ...|++.
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~-dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l~a 159 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMT-NPRYHYHLEINLFEEETLALTRKSLKDFFNINA 159 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEEC-CTTTCCCEEEEESCHHHHHHHHHHHHHHHCCCC
T ss_pred ChHHHHHHHHHHHhcCeecC-CCCCceeEEEeeCcHHHHHHHHHHHHHhcCCCc
Confidence 34555678999999999996 677665 5544443 666778888 7788854
No 31
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=31.40 E-value=28 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++ .+.|.+.|+
T Consensus 67 ~aV~~~L~~~Gv~-~~ri~~~g~ 88 (138)
T 3cyp_B 67 YRVMKVLIQYGVN-PNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHTTCC-GGGEEEEEC
T ss_pred HHHHHHHHHcCCC-HHHEEEEEE
Confidence 4688999999995 467888764
No 32
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=31.20 E-value=66 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=35.4
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~ 89 (113)
.|+|+-.++-+.-+.-.|.++++=.|.|..+.+.|-+|++||+.
T Consensus 7 ~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~ 50 (772)
T 4g9i_A 7 HVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGRE 50 (772)
T ss_dssp EECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCS
T ss_pred EEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECH
Confidence 46777777778888888889999999997544457899999974
No 33
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=29.80 E-value=26 Score=22.90 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|++ .+.|.+.|+
T Consensus 81 A~aV~~~L~~~Gi~-~~ri~~~g~ 103 (129)
T 2kgw_A 81 AKIVADYLVARGVA-GDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHTCC-GGGEEEEEC
T ss_pred HHHHHHHHHHcCCC-HHHEEEEEE
Confidence 34788999999995 467887664
No 34
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=28.72 E-value=1.2e+02 Score=20.84 Aligned_cols=62 Identities=29% Similarity=0.486 Sum_probs=37.6
Q ss_pred CCCCCeEEEEEEee-cCC----eeEEEEeCCC---Ccch-HHHHHHHHhhh-ccc----ccEEEeCCCCCeEEEEcC
Q 039810 25 AGSKDYVHIRVQQR-NGR----KSLTTVQGLK---KEFS-YNKILKDLKKE-FCC----NGTVVQDPELGQVIQLQG 87 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~----K~VT~V~Gl~---~~~d-lk~lak~lKk~-~~c----ggsv~~~~~~g~~I~vQG 87 (113)
.|....|.|++... .++ ..-++|+|.. +..| ++++.++|.+. +.| ||-+. .....+.|.|=|
T Consensus 27 ~G~fKYVLi~v~~~~~~~~~~~~~k~iVRG~~~a~yH~diyd~~~~el~~~Gl~~~clGGGRI~-hd~~~K~IkVYG 102 (135)
T 2nmm_A 27 DGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCECLGGGRIS-HQSQDKKIHVYG 102 (135)
T ss_dssp SSEEEEEEEEEECCC-------CEEEEEEEETTCSSHHHHHHHHHHHHHTTTCEEEEEEEEEEE-EETTTTEEEEEC
T ss_pred CCcEEEEEEEEEeCCCCCCcccceeEEEEECCCccHHHHHHHHHHHHHHHcCCeeEEeCCeEEE-ecCCCCEEEEEE
Confidence 48888999998754 344 4678999976 5445 67777777663 333 33343 222334677654
No 35
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=28.33 E-value=1.3e+02 Score=21.03 Aligned_cols=62 Identities=29% Similarity=0.486 Sum_probs=37.4
Q ss_pred CCCCCeEEEEEEee-cCC----eeEEEEeCCC---Ccch-HHHHHHHHhhh-ccc----ccEEEeCCCCCeEEEEcC
Q 039810 25 AGSKDYVHIRVQQR-NGR----KSLTTVQGLK---KEFS-YNKILKDLKKE-FCC----NGTVVQDPELGQVIQLQG 87 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~----K~VT~V~Gl~---~~~d-lk~lak~lKk~-~~c----ggsv~~~~~~g~~I~vQG 87 (113)
.|....|.|++... .++ ..-++|+|.. +..| ++++.++|.+. +.| ||-+. .....+.|.|=|
T Consensus 36 ~G~fKYVLi~v~~~~~~~~~~~~~k~IVRG~~~a~YH~Diyd~~~~el~~~Gl~~ecLGGGRI~-hd~~~K~IkVYG 111 (144)
T 2hw4_A 36 DGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCECLGGGRIS-HQSQDKKIHVYG 111 (144)
T ss_dssp SEEEEEEEEEEECC--------CEEEEEEECTTCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE-EETTTTEEEEEC
T ss_pred CCcEEEEEEEEEeCCCCCccccceeEEEEECCCchHHHHHHHHHHHHHHHcCCeeEEeCCcEEE-ecCCCCEEEEEE
Confidence 47788999998754 344 4688999987 4445 67777777653 333 33443 222334677654
No 36
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=27.84 E-value=45 Score=20.74 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.4
Q ss_pred ccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHH-cCC
Q 039810 68 CCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQ-AGI 102 (113)
Q Consensus 68 ~cggsv~~~~~~g~~I~vQGD--~~~~v~~~L~~-~G~ 102 (113)
+||+-+... ...++.-|| +++.+.++|.+ .|+
T Consensus 24 ~cG~EI~~g---d~yl~f~GeiIl~eNl~~Yl~e~~g~ 58 (72)
T 2dsm_A 24 FYGDEVTPV---DDYVIDGGEIILRENLERYLREQLGF 58 (72)
T ss_dssp TTSSCBCTT---SCEEEETTEEEEHHHHHHHHHHTCCC
T ss_pred ccCCeeecC---CeEEEECCeeehHHHHHHHHHHHhCc
Confidence 688888753 356777677 78889999988 487
No 37
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=27.47 E-value=1.3e+02 Score=23.01 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=40.0
Q ss_pred cCCeeEEEEeCCC-CcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCC
Q 039810 39 NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 39 ~g~K~VT~V~Gl~-~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~ 104 (113)
.+.++|.+|.|=. ..+-+..|.++|++. .+ +. -.+.+.|.|++-..++|...|+.+
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~~-~~------~~~~~tG~h~~~~~~~~~~~~i~~ 79 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQD---NR-FV------AKVCVTGQHREMLDQVLELFSITP 79 (396)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHC---TT-EE------EEEEECCSSSHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEEeccHhHHHHHHHHHHHHhC---CC-Cc------EEEEEecccHHHHHHHHHhcCCCC
Confidence 4446899999977 566788999999875 11 22 257888999876777777778843
No 38
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=27.18 E-value=1e+02 Score=18.70 Aligned_cols=29 Identities=7% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeEe
Q 039810 82 VIQLQGDQRKNVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~~~~~~I~i 110 (113)
...|.|+....+...|.+.||.+...|+|
T Consensus 11 I~~i~~~~~~~~~rrL~~mGl~pG~~V~V 39 (83)
T 2lx9_A 11 ITGFSREISPAYRQKLLSLGMLPGSSFNV 39 (83)
T ss_dssp EEECCSSSCHHHHHHHHHSSCCSSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCEEEE
Confidence 44566654567788888888877776665
No 39
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=27.10 E-value=1e+02 Score=18.10 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeEe
Q 039810 82 VIQLQGDQRKNVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~~~~~~I~i 110 (113)
...+.++ ..+..+|.+.|+.+...|+|
T Consensus 18 I~~i~~~--~~~~~rL~~lGi~~G~~v~v 44 (77)
T 3e19_A 18 VVNILGG--HNARQKLVSMGLTPGATIQV 44 (77)
T ss_dssp EEEECSH--HHHHHHHHTTTCSTTCEEEE
T ss_pred EEEEECC--HHHHHHHHHCCCCCCCEEEE
Confidence 4567765 67888899999988777766
No 40
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=26.49 E-value=1e+02 Score=20.40 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=25.0
Q ss_pred hcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCC
Q 039810 66 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 66 ~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~ 104 (113)
-.||+|-.. .++..||..+.+...|.+-|+..
T Consensus 5 FIacnGQTR-------aVq~~~~y~~~L~~ALkKF~led 36 (110)
T 1k8r_B 5 FIACNGQTR-------AVQSRGDYQKTLAIALKKFSLED 36 (110)
T ss_dssp EECSTTCEE-------EEECCSCHHHHHHHHHHHHTCCC
T ss_pred EeecCCceE-------EeeehhhHHHHHHHHHHHcCCCC
Confidence 357887765 58889999988888998887743
No 41
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=25.95 E-value=59 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++ .+.|.+-|+
T Consensus 112 ~aV~~~L~~~Gv~-~~ri~~~g~ 133 (169)
T 3ldt_A 112 ETMMTFLWANGIA-AKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHTTCC-TTTEEECCT
T ss_pred HHHHHHHHHcCCC-HHHEEEEEE
Confidence 5689999999995 567888774
No 42
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=25.39 E-value=28 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++ .+.|.+-|+
T Consensus 82 ~aV~~~L~~~Gv~-~~ri~~~g~ 103 (148)
T 4erh_A 82 QSVVDYLISKGIP-SDKISARGM 103 (148)
T ss_dssp HHHHHHHHTTTCC-GGGEEEEEE
T ss_pred HHHHHHHHHcCCC-HHHEEEEEE
Confidence 7899999999995 467887663
No 43
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=24.35 E-value=1.1e+02 Score=19.52 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=9.8
Q ss_pred EEEEcCChhHHHHHHH
Q 039810 82 VIQLQGDQRKNVSTFL 97 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L 97 (113)
+|.+.|+.-+...+.|
T Consensus 74 ~i~a~G~Dee~Al~~l 89 (100)
T 1kkl_H 74 TISASGADENDALNAL 89 (100)
T ss_dssp EEEEESTTHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHH
Confidence 4668898755544433
No 44
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=24.22 E-value=27 Score=22.53 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=21.1
Q ss_pred EeCCC--CcchHHHHHHHHhhhcccccE
Q 039810 47 VQGLK--KEFSYNKILKDLKKEFCCNGT 72 (113)
Q Consensus 47 V~Gl~--~~~dlk~lak~lKk~~~cggs 72 (113)
|+.-+ ..+|+..|+.+|+.+--|+|+
T Consensus 41 I~shP~~~~vDId~LC~eLk~kAKCsg~ 68 (86)
T 1sse_B 41 ITTHPKYSDIDVDGLCSELMAKAKCSER 68 (86)
T ss_dssp HHTCSCCSSCCHHHHHHHHTTTCCEETT
T ss_pred HhcCcchhhcCHHHHHHHHHHhCccCCC
Confidence 44445 488999999999999888874
No 45
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=24.21 E-value=1.5e+02 Score=19.24 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=37.6
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHH--HcCCCCCCCeEecCC
Q 039810 40 GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV--QAGIVKKEFIKIHGF 113 (113)
Q Consensus 40 g~K~VT~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~--~~G~~~~~~I~ihg~ 113 (113)
.++.+..+..+...-.+..+++.+++. +...-.|.=.|+..+.+.+++. +.|+ +++|.++|+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l----------~~~~l~i~G~~~~~~~l~~~~~~~~~~l--~~~v~~~g~ 85 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL----------QDEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGS 85 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC----------TTSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEES
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC----------CCcEEEEEecCccHHHHHHHHHhhhccc--CCcEEEeCC
Confidence 345677777777444677777777754 1111122223455667888887 6677 357888874
No 46
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=23.46 E-value=98 Score=17.85 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=18.7
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeEe
Q 039810 82 VIQLQGDQRKNVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~~~~~~I~i 110 (113)
...+.++....+..+|.+.||.+...|+|
T Consensus 12 I~~i~~~~~~~~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 12 ITGYSPAISNGYRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp EEEECTTCCTTHHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 44565533345677888888877766655
No 47
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=23.38 E-value=46 Score=23.05 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++ .+.|.+-|+
T Consensus 73 ~aV~~~L~~~Gi~-~~ri~~~G~ 94 (164)
T 1r1m_A 73 YVVANNLVSNGVP-VSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHTTCC-GGGEEEEEC
T ss_pred HHHHHHHHHcCCC-HHHEEEEEE
Confidence 4688999999995 467887664
No 48
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=22.88 E-value=38 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
...|+++|.+.|++ .+.|.+-|+
T Consensus 94 A~aV~~~L~~~Gv~-~~ri~~~g~ 116 (166)
T 3s06_A 94 AYRVMKVLIQYGVN-PNQLSFSSY 116 (166)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEEEE
T ss_pred HHHHHHHHHHcCCC-hHhEEEEEE
Confidence 45788999999995 467887663
No 49
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=98 Score=19.98 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=31.4
Q ss_pred EEeCCCCcchHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~-cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~ 99 (113)
.|.||++.++.+.|-+.|...|+ |||.|.+-..+-..|... -.+.....+.+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~--~~esA~~A~~~ 65 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFI--NQDSAERAQKR 65 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEES--SHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEEC--CHHHHHHHHHH
Confidence 49999988888887777777765 556876543222334332 33344444444
No 50
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=22.25 E-value=1.9e+02 Score=20.07 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=38.7
Q ss_pred EEeCCCCcchHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCC
Q 039810 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE 106 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKk~~~cggsv~~~~~~g~~I~vQGD~~~~v~~~L~~~G~~~~~ 106 (113)
+.+||+ .-|..++...|... +-...+..+..+|..|.|--++..+++..|...|+|+..
T Consensus 3 Ly~~L~-~~da~~i~~~L~~~-~I~y~~~~~~~~g~~I~Vp~~~~~~ar~~La~~GLP~~~ 61 (170)
T 2y9j_Y 3 LLKGLD-QEQANEVIAVLQMH-NIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRP 61 (170)
T ss_dssp EEEEEC-HHHHHHHHHHHHHT-TCCEEEEECTTSCEEEEECGGGHHHHHHHHHHTTCSCCC
T ss_pred cccCCC-HHHHHHHHHHHHHc-CCCEEEecCCCCCeEEEECHHHHHHHHHHHHHcCCCCCC
Confidence 345555 23566666777654 222233222223678999999999999999999997643
No 51
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=21.64 E-value=1.3e+02 Score=19.12 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=17.8
Q ss_pred CCCCeEEEEEEeecCCeeEEEE
Q 039810 26 GSKDYVHIRVQQRNGRKSLTTV 47 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V 47 (113)
.....+.+..-.|=.+|.||+|
T Consensus 61 ik~~v~alg~T~Ry~~KyVT~v 82 (87)
T 2v8q_B 61 IKDSVMVLSATHRYKKKYVTTL 82 (87)
T ss_dssp CBTTEEEEEEEEEETTEEEEEE
T ss_pred ccCCeEEEeeeeeecceeEEEE
Confidence 4456777888889899999998
No 52
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.73 E-value=1.7e+02 Score=19.28 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEEEeecCCeeEEEEeCCCCcchHHHHHHHHhhhccc
Q 039810 24 GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 69 (113)
Q Consensus 24 ~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKk~~~c 69 (113)
.+.+...|.|++.-..|+...-.| ....-+++|.+++..+.++
T Consensus 34 ~k~~~~~I~LKV~~qdg~ev~fkI---k~tt~L~KLm~aY~er~Gl 76 (115)
T 3kyd_D 34 DKKEGEYIKLKVIGQDSSEIHFKV---KMTTHLKKLKESYCQRQGV 76 (115)
T ss_dssp -----CEEEEEEECTTSCEEEEEE---ETTSCTHHHHHHHHHHHTC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEE---ccCChHHHHHHHHHHHhCC
Confidence 456678999998766564422222 2344578888888888665
No 53
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.44 E-value=94 Score=19.69 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=18.3
Q ss_pred EEEEcCC--hhHHHHHHHHHcCC
Q 039810 82 VIQLQGD--QRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~vQGD--~~~~v~~~L~~~G~ 102 (113)
.|++.|| ..+++.++|.+.|+
T Consensus 68 ~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 68 LTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHHHHHHCCC
Confidence 7899998 56788999999987
No 54
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=20.30 E-value=50 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCCCCCCeEecCC
Q 039810 91 KNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 91 ~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++ ++.|.+-|+
T Consensus 92 ~aV~~~L~~~Gv~-~~ri~~~g~ 113 (149)
T 2k1s_A 92 DSVASALITQGVD-ASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHTCC-GGGEEEEEC
T ss_pred HHHHHHHHHcCCC-HHHEEEEEE
Confidence 4688899999995 467887664
No 55
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=20.28 E-value=57 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCCCCCCeEecCC
Q 039810 90 RKNVSTFLVQAGIVKKEFIKIHGF 113 (113)
Q Consensus 90 ~~~v~~~L~~~G~~~~~~I~ihg~ 113 (113)
-..|+++|.+.|++ .+.|.+-|+
T Consensus 121 A~aV~~~L~~~Gv~-~~ri~~~g~ 143 (193)
T 3s0y_A 121 AYRVMKVLIQYGVN-PNQLSFSSY 143 (193)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEEEC
T ss_pred HHHHHHHHHHcCCC-HHHEEEEEE
Confidence 35688999999995 467887764
No 56
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=20.22 E-value=57 Score=21.83 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=22.0
Q ss_pred eEEEEcCChhH-HHHHHHHHcCCCCCCCeEe
Q 039810 81 QVIQLQGDQRK-NVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 81 ~~I~vQGD~~~-~v~~~L~~~G~~~~~~I~i 110 (113)
+-|=||=|..+ -|++-|.+.|+|+ +.|.+
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~~GVpk-~dIVL 96 (112)
T 2nlv_A 67 GKIWLQQNLTDRNPAEELVMMGVPR-EDIVL 96 (112)
T ss_dssp TEEEEEEECSSSCHHHHHHHTTCCG-GGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCCCH-HHEEE
Confidence 46777777666 6888999999976 46764
No 57
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.08 E-value=1.5e+02 Score=17.62 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=16.8
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeEe
Q 039810 82 VIQLQGDQRKNVSTFLVQAGIVKKEFIKI 110 (113)
Q Consensus 82 ~I~vQGD~~~~v~~~L~~~G~~~~~~I~i 110 (113)
...|.+ ...+..+|.+.||.+...|+|
T Consensus 15 I~~i~~--~~~~~~rL~~lGl~pG~~v~V 41 (81)
T 2k5l_A 15 VVKLHG--TGALKRRIMDMGITRGCEIYI 41 (81)
T ss_dssp EEEECS--SSHHHHHHHHHTCCTTCEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCCCCEEEE
Confidence 345555 345677777777766666654
Done!