RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039810
         (113 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score =  131 bits (331), Expect = 1e-41
 Identities = 61/109 (55%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

Query: 7   QIPSAFDPFAEANAED--SGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLK 64
           Q   +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  K
Sbjct: 18  QNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK 77

Query: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 113
           K+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct: 78  KKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 63.1 bits (154), Expect = 3e-15
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 33  IRVQ-QRNGR--KSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
           +R+Q Q +GR  K +  + G+   +    K+  +LKK+  C G V        VI++QGD
Sbjct: 6   VRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGD 60

Query: 89  QRKNVSTFLVQAGIVKK 105
           +R  + + L   G+  K
Sbjct: 61  KRDLLKSLLEAKGMKVK 77


>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
          (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 226

 Score = 23.3 bits (50), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 19 NAEDSGAGSKDYVHIRVQQRNGRKS 43
          N +DS   +K  V +++  R G  S
Sbjct: 62 NLKDSLTEAKSDVVVKIGLRKGSNS 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,194
Number of extensions: 16799
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)