Query 039811
Match_columns 360
No_of_seqs 121 out of 1195
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 13:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 3.7E-51 7.9E-56 397.4 27.4 334 20-356 59-465 (467)
2 KOG1304 Amino acid transporter 100.0 2.4E-49 5.1E-54 369.1 30.5 329 18-355 44-449 (449)
3 KOG1303 Amino acid transporter 100.0 3.4E-44 7.3E-49 340.0 28.9 333 18-358 35-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 3.4E-46 7.4E-51 359.4 -0.0 328 19-352 1-408 (409)
5 KOG1305 Amino acid transporter 100.0 1.2E-41 2.7E-46 321.0 24.1 335 18-359 3-409 (411)
6 PLN03074 auxin influx permease 100.0 2.3E-39 5E-44 313.7 26.7 328 18-360 43-456 (473)
7 COG0814 SdaC Amino acid permea 100.0 2.9E-31 6.4E-36 253.6 29.3 329 17-352 5-412 (415)
8 KOG4303 Vesicular inhibitory a 100.0 2E-34 4.4E-39 254.8 5.8 331 18-358 114-517 (524)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 4.6E-21 1E-25 182.3 30.9 321 19-345 1-392 (394)
10 PRK09664 tryptophan permease T 99.9 7E-21 1.5E-25 179.5 29.6 325 18-349 6-405 (415)
11 PRK10483 tryptophan permease; 99.9 1.3E-20 2.9E-25 177.8 29.9 327 17-350 7-405 (414)
12 PRK15132 tyrosine transporter 99.9 2.5E-20 5.4E-25 176.6 29.6 319 21-348 3-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 8.1E-20 1.8E-24 174.4 24.3 291 27-323 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 3E-19 6.4E-24 168.7 26.8 324 20-350 18-441 (443)
15 TIGR00814 stp serine transport 99.8 9.7E-17 2.1E-21 152.5 22.8 314 22-340 4-395 (397)
16 PRK10655 potE putrescine trans 99.3 4.9E-09 1.1E-13 102.1 31.9 231 17-257 4-245 (438)
17 TIGR00912 2A0309 spore germina 99.3 2.2E-09 4.7E-14 101.8 26.1 234 19-263 1-240 (359)
18 PRK10644 arginine:agmatin anti 99.3 7.7E-09 1.7E-13 100.9 30.4 232 17-258 6-248 (445)
19 TIGR00905 2A0302 transporter, 99.3 1.4E-08 3.1E-13 99.8 31.5 237 17-259 5-256 (473)
20 TIGR03810 arg_ornith_anti argi 99.3 3.7E-08 8.1E-13 96.7 33.0 236 19-260 1-253 (468)
21 PRK10435 cadB lysine/cadaverin 99.2 2.5E-08 5.5E-13 97.0 30.6 232 17-259 3-245 (435)
22 PRK11021 putative transporter; 99.1 1.9E-07 4.1E-12 90.2 30.9 219 22-255 2-231 (410)
23 TIGR00930 2a30 K-Cl cotranspor 99.1 4.1E-08 8.9E-13 103.1 27.2 238 17-256 74-335 (953)
24 TIGR00909 2A0306 amino acid tr 99.1 1.6E-07 3.4E-12 91.3 29.6 236 18-258 2-252 (429)
25 PRK11387 S-methylmethionine tr 99.1 2.5E-07 5.5E-12 90.9 29.9 235 17-259 12-264 (471)
26 PF03845 Spore_permease: Spore 99.1 1.2E-07 2.6E-12 88.4 25.9 231 20-263 1-236 (320)
27 PRK15049 L-asparagine permease 99.1 5.1E-07 1.1E-11 89.3 30.7 235 18-259 27-278 (499)
28 PRK10746 putative transport pr 99.1 6.2E-07 1.3E-11 87.9 30.8 230 17-255 8-254 (461)
29 TIGR00911 2A0308 L-type amino 99.1 2.1E-07 4.7E-12 92.2 27.9 236 17-258 40-292 (501)
30 PF13520 AA_permease_2: Amino 99.1 1.5E-07 3.1E-12 91.4 26.1 236 22-262 2-247 (426)
31 PRK11049 D-alanine/D-serine/gl 99.0 4.7E-07 1E-11 89.0 29.5 232 16-257 17-267 (469)
32 PRK11357 frlA putative fructos 99.0 4.2E-07 9.2E-12 88.7 28.9 235 16-257 5-251 (445)
33 PRK10249 phenylalanine transpo 99.0 7.6E-07 1.6E-11 87.2 30.6 232 17-257 19-265 (458)
34 PRK10836 lysine transporter; P 99.0 8.4E-07 1.8E-11 87.6 30.5 237 15-259 11-263 (489)
35 TIGR00908 2A0305 ethanolamine 99.0 8.2E-07 1.8E-11 86.6 30.1 230 15-254 3-244 (442)
36 KOG3832 Predicted amino acid t 99.0 9.9E-09 2.2E-13 85.9 13.8 149 20-168 11-241 (319)
37 PRK10238 aromatic amino acid t 99.0 8.4E-07 1.8E-11 86.9 29.3 228 16-252 9-251 (456)
38 TIGR01773 GABAperm gamma-amino 99.0 1.2E-07 2.7E-12 92.6 22.7 232 17-257 10-257 (452)
39 KOG1287 Amino acid transporter 99.0 1.4E-08 3E-13 97.0 15.1 305 17-328 10-391 (479)
40 TIGR00913 2A0310 amino acid pe 98.9 2.7E-06 5.9E-11 83.8 30.3 229 19-255 2-251 (478)
41 TIGR00906 2A0303 cationic amin 98.9 1.4E-06 3E-11 87.3 25.9 240 17-258 26-288 (557)
42 PRK10580 proY putative proline 98.9 4.2E-06 9.1E-11 82.0 28.7 230 17-255 7-253 (457)
43 PRK10197 gamma-aminobutyrate t 98.7 3.1E-05 6.8E-10 75.6 28.0 215 31-255 4-235 (446)
44 COG0531 PotE Amino acid transp 98.7 4.8E-05 1E-09 74.5 29.0 241 15-262 8-262 (466)
45 COG1113 AnsP Gamma-aminobutyra 98.6 6.7E-05 1.4E-09 71.1 26.6 222 17-250 11-252 (462)
46 TIGR00907 2A0304 amino acid pe 98.6 0.00015 3.3E-09 71.5 30.2 243 17-261 10-277 (482)
47 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.0016 3.4E-08 63.6 31.0 244 15-263 8-273 (442)
48 TIGR03428 ureacarb_perm permea 98.4 0.0021 4.5E-08 63.4 31.5 241 16-261 10-273 (475)
49 TIGR03813 put_Glu_GABA_T putat 98.3 0.0019 4.1E-08 63.6 29.5 237 20-261 2-254 (474)
50 PRK15238 inner membrane transp 98.3 0.0043 9.3E-08 61.5 32.0 82 17-101 5-89 (496)
51 PF00324 AA_permease: Amino ac 98.2 6.1E-05 1.3E-09 74.3 16.6 229 31-263 7-262 (478)
52 TIGR00910 2A0307_GadC glutamat 98.1 0.0058 1.2E-07 60.8 28.6 87 18-109 3-93 (507)
53 PRK11375 allantoin permease; P 98.1 0.011 2.4E-07 58.3 29.1 210 50-263 58-293 (484)
54 COG0833 LysP Amino acid transp 98.0 0.00065 1.4E-08 65.9 18.3 225 18-252 43-285 (541)
55 COG3949 Uncharacterized membra 98.0 0.0022 4.8E-08 58.4 20.4 101 25-126 7-110 (349)
56 KOG1289 Amino acid transporter 97.8 0.016 3.5E-07 56.4 23.7 228 40-269 71-320 (550)
57 PF02554 CstA: Carbon starvati 97.8 0.0023 4.9E-08 59.5 16.9 123 3-125 32-157 (376)
58 COG1457 CodB Purine-cytosine p 97.8 0.044 9.5E-07 52.8 27.3 172 85-272 84-267 (442)
59 KOG1286 Amino acid transporter 97.7 0.00018 4E-09 71.3 9.3 237 18-258 29-289 (554)
60 TIGR02358 thia_cytX probable h 97.6 0.078 1.7E-06 50.8 28.8 201 49-263 26-234 (386)
61 TIGR00835 agcS amino acid carr 97.2 0.035 7.6E-07 53.4 17.5 85 18-103 44-138 (425)
62 PF00474 SSF: Sodium:solute sy 97.1 0.28 6.1E-06 47.2 24.4 108 18-126 5-115 (406)
63 COG0591 PutP Na+/proline sympo 97.0 0.4 8.7E-06 47.5 28.3 110 17-126 36-150 (493)
64 PRK09442 panF sodium/panthothe 97.0 0.43 9.3E-06 47.2 29.9 110 17-126 39-153 (483)
65 PF02133 Transp_cyt_pur: Perme 97.0 0.016 3.4E-07 56.5 13.6 116 15-131 3-120 (440)
66 PRK15015 carbon starvation pro 96.9 0.027 5.8E-07 56.1 14.1 122 2-123 62-186 (701)
67 TIGR00813 sss transporter, SSS 96.9 0.46 1E-05 45.8 29.4 108 18-126 2-111 (407)
68 PRK11017 codB cytosine permeas 96.8 0.59 1.3E-05 45.1 28.3 75 49-124 39-113 (404)
69 TIGR02119 panF sodium/pantothe 96.6 0.8 1.7E-05 45.1 30.5 110 17-126 38-152 (471)
70 COG1966 CstA Carbon starvation 96.6 0.016 3.4E-07 56.4 10.1 122 2-123 31-155 (575)
71 KOG2083 Na+/K+ symporter [Inor 96.1 0.095 2.1E-06 51.6 12.3 222 20-252 29-274 (643)
72 PRK12488 acetate permease; Pro 94.9 4.9 0.00011 40.5 32.8 107 18-126 66-175 (549)
73 PRK10484 putative transporter; 94.8 4.9 0.00011 40.2 30.4 90 17-107 36-126 (523)
74 TIGR00796 livcs branched-chain 94.3 1.3 2.8E-05 42.3 13.7 80 49-128 221-301 (378)
75 TIGR02711 symport_actP cation/ 93.5 9.4 0.0002 38.4 33.8 107 18-126 66-175 (549)
76 TIGR00796 livcs branched-chain 93.4 7.4 0.00016 37.1 27.6 68 29-101 3-73 (378)
77 KOG1288 Amino acid transporter 93.3 7.1 0.00015 39.7 16.8 33 225-257 317-350 (945)
78 TIGR02121 Na_Pro_sym sodium/pr 93.3 9.1 0.0002 37.9 28.1 108 18-126 35-151 (487)
79 PF05525 Branch_AA_trans: Bran 93.1 1.5 3.3E-05 42.3 11.9 86 43-128 221-307 (427)
80 COG1953 FUI1 Cytosine/uracil/t 92.1 13 0.00028 36.5 28.8 195 79-279 100-324 (497)
81 PRK00701 manganese transport p 91.9 13 0.00029 36.2 26.0 42 80-121 92-133 (439)
82 PRK09395 actP acetate permease 91.4 17 0.00037 36.6 32.8 108 18-126 68-177 (551)
83 COG1914 MntH Mn2+ and Fe2+ tra 90.3 18 0.00039 35.0 23.5 47 80-126 75-121 (416)
84 PF01235 Na_Ala_symp: Sodium:a 90.2 18 0.0004 34.9 17.8 88 15-103 13-110 (416)
85 PF05525 Branch_AA_trans: Bran 90.1 19 0.00041 34.9 20.2 73 21-98 3-79 (427)
86 PF02028 BCCT: BCCT family tra 87.8 30 0.00066 34.2 17.6 162 12-175 66-258 (485)
87 PRK15433 branched-chain amino 87.6 12 0.00025 36.4 12.4 102 48-158 230-332 (439)
88 PRK15419 proline:sodium sympor 87.2 33 0.00072 34.1 30.6 107 17-125 38-154 (502)
89 TIGR03648 Na_symport_lg probab 86.0 41 0.00088 33.9 29.3 109 17-126 30-140 (552)
90 COG1114 BrnQ Branched-chain am 81.9 51 0.0011 31.7 14.2 81 48-128 228-309 (431)
91 COG1292 BetT Choline-glycine b 76.1 42 0.0009 33.4 11.4 121 13-134 80-226 (537)
92 PF01566 Nramp: Natural resist 70.2 98 0.0021 29.1 16.6 45 80-124 40-84 (358)
93 COG4147 DhlC Predicted symport 69.4 1.2E+02 0.0026 29.9 24.1 89 36-127 59-150 (529)
94 PRK09928 choline transport pro 68.6 85 0.0018 32.4 12.0 161 13-175 85-275 (679)
95 KOG2466 Uridine permease/thiam 63.7 1.6E+02 0.0034 29.2 15.9 145 17-167 52-216 (572)
96 KOG2349 Na+:iodide/myo-inosito 55.3 30 0.00065 34.9 6.1 87 18-111 44-137 (585)
97 PHA02764 hypothetical protein; 51.3 2.1E+02 0.0046 26.7 19.8 90 18-109 11-104 (399)
98 KOG1289 Amino acid transporter 51.0 2.7E+02 0.0059 27.9 12.9 89 80-168 323-423 (550)
99 PF11085 YqhR: Conserved membr 47.6 1.7E+02 0.0036 24.5 8.4 62 33-106 47-110 (173)
100 PF08019 DUF1705: Domain of un 47.3 1.6E+02 0.0034 24.1 10.9 19 258-276 38-56 (156)
101 PF05805 L6_membrane: L6 membr 47.1 51 0.0011 28.2 5.4 65 293-357 43-117 (195)
102 COG0733 Na+-dependent transpor 46.2 2.9E+02 0.0064 26.9 20.3 98 17-120 5-109 (439)
103 KOG2592 Tumor differentially e 41.2 2E+02 0.0044 27.4 8.7 59 253-311 90-157 (426)
104 KOG2082 K+/Cl- cotransporter K 35.1 5.7E+02 0.012 27.1 22.8 101 22-123 116-220 (1075)
105 TIGR00909 2A0306 amino acid tr 34.9 4.1E+02 0.009 25.4 14.5 47 81-127 263-309 (429)
106 KOG4812 Golgi-associated prote 30.8 1.3E+02 0.0028 26.6 5.3 79 269-351 152-244 (262)
107 PF04835 Pox_A9: A9 protein co 29.7 1.5E+02 0.0032 19.5 4.2 30 236-265 23-52 (54)
108 PRK10649 hypothetical protein; 29.5 4.1E+02 0.0089 27.0 9.7 33 245-277 77-109 (577)
109 PF03348 Serinc: Serine incorp 27.8 1.3E+02 0.0029 29.3 5.6 56 257-312 92-156 (429)
110 PRK13183 psbN photosystem II r 27.5 64 0.0014 20.5 2.2 29 236-264 6-34 (46)
111 PF11990 DUF3487: Protein of u 27.5 3E+02 0.0066 21.5 8.8 74 9-83 4-83 (121)
112 PRK11462 putative transporter; 26.9 4.4E+02 0.0095 25.7 9.3 18 83-100 216-233 (460)
113 PRK09598 lipid A phosphoethano 26.9 2.1E+02 0.0045 28.7 6.9 63 259-335 94-156 (522)
114 TIGR03750 conj_TIGR03750 conju 25.5 3.2E+02 0.0069 21.1 9.2 67 18-84 15-81 (111)
115 KOG2174 Leptin receptor gene-r 24.7 2.4E+02 0.0051 22.3 5.3 31 23-53 65-95 (131)
116 PRK09950 putative transporter; 24.4 7.2E+02 0.016 24.9 14.8 155 18-173 81-266 (506)
117 PF06836 DUF1240: Protein of u 24.4 2.7E+02 0.0059 20.8 5.5 50 303-352 13-62 (95)
118 CHL00020 psbN photosystem II p 24.2 54 0.0012 20.5 1.4 28 237-264 4-31 (43)
119 PF02468 PsbN: Photosystem II 23.4 86 0.0019 19.7 2.2 27 238-264 5-31 (43)
120 cd08763 Cyt_b561_CYB561 Verteb 20.8 2.5E+02 0.0053 22.8 5.1 30 325-354 36-65 (143)
121 CHL00058 petD cytochrome b6/f 20.5 5E+02 0.011 21.5 11.3 52 289-346 90-142 (160)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.7e-51 Score=397.42 Aligned_cols=334 Identities=21% Similarity=0.330 Sum_probs=264.0
Q ss_pred CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHH
Q 039811 20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~ 99 (360)
.++..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.+++++.+..+|+|++++++||+++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~ 138 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY 138 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhcccccc---chHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHH
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWN---TRVIALLFVMVFVMLPLALFG----LVGYSAISVLLAVM 172 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~~~~ 172 (360)
+++.+.+.++|.|++|+++++|+++++++.....+++. .++.+..++.+++++|++++| ++++|.+++. ++.
T Consensus 139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~-~i~ 217 (467)
T PTZ00206 139 VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS-FMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999988875422111111 122233445667899999999 6666666653 323
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC---Cc----ccCccccccccccchhhhhhhhccccc----cccccCCC--chHHHHH
Q 039811 173 FVAICSVMAIYAVGEGKSKSPKL---LP----QLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS--DMITAVR 239 (360)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~--~~~~~~~ 239 (360)
+.++.+ ..+...++..++.+. .+ +....+...+.+.++++++|||.||.+ ++|||||+ |+.++..
T Consensus 218 ~~vi~i--vi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~ 295 (467)
T PTZ00206 218 YLVIVI--VVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST 295 (467)
T ss_pred HHHhhh--hhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence 333222 122222221111110 01 011111223467889999999999999 99999976 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHhhCCC-CCCchH---------------------------------------
Q 039811 240 ISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFD-QSSGSA--------------------------------------- 279 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~-~~~~~~--------------------------------------- 279 (360)
.++.+++++|..+|++||++|||+++++++.|++ .++...
T Consensus 296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~ 375 (467)
T PTZ00206 296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAF 375 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCch
Confidence 9999999999999999999999999999999995 444311
Q ss_pred ----------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhh---cCCCCchhhHHHHHHHHHHHHHHHHH
Q 039811 280 ----------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRD---VHGISTTGDRIIATVMMVLAVVTSTI 346 (360)
Q Consensus 280 ----------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~---~~~~~~~~~~~~~~~~~~~G~~~~v~ 346 (360)
.+.+.++|+++|+++.+++++||++++.++|++|+++|++. ++++..+++++.++.++++|++.++.
T Consensus 376 ~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~ 455 (467)
T PTZ00206 376 WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVF 455 (467)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEe
Confidence 22346789999999999999999999999999999999983 22223445668899999999999999
Q ss_pred HHHHHHHhhh
Q 039811 347 AISTNIYGSI 356 (360)
Q Consensus 347 g~~~si~~i~ 356 (360)
|||+++++.+
T Consensus 456 Gt~~si~~~~ 465 (467)
T PTZ00206 456 GTGATIWGVT 465 (467)
T ss_pred cchhHhhHHh
Confidence 9999999976
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=369.14 Aligned_cols=329 Identities=22% Similarity=0.355 Sum_probs=284.7
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCCHHHHHHHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA------GETSTYAGVMRES 91 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~------~~~~~y~~l~~~~ 91 (360)
++..|..++..|+.|.++|+|+|+||+||+++||+.|.+..++++.++.|+++.+++|+++ ....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999999763 1345778777666
Q ss_pred c----------ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh-hh
Q 039811 92 F----------GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG-LV 160 (360)
Q Consensus 92 ~----------G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-l~ 160 (360)
+ |+++|.+++.+++++|+|.|++|+++++++++++.+.....++ +.+.++. +.+...+|+++.| +|
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~--s~~~~i~-~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVL--SVRLYIL-IQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCc--cHHHHHH-HHHHHHHHHHHHHhhH
Confidence 5 8999999999999999999999999999999999885444443 4444443 4556789999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCCchH-
Q 039811 161 GYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMI- 235 (360)
Q Consensus 161 ~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~- 235 (360)
+++.+|+ ++.+++++.+++..++..++.. +..+.|.+ .++.++...+|+..|||.++.. +++||+|++|.
T Consensus 201 ~Lsp~Sl-~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~---~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g 275 (449)
T KOG1304|consen 201 ILSPFSL-FANVFILVGLAIIMYYLVQDLP-PTSDLPAV---TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPG 275 (449)
T ss_pred HhhHHHH-HHHHHHHHHHHHHHHHHHhccC-Cccccccc---cchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCC
Confidence 9999998 5788888888888888877644 33444433 3355666788999999999988 99999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCchH----------------------------------
Q 039811 236 --TAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA---------------------------------- 279 (360)
Q Consensus 236 --~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~---------------------------------- 279 (360)
+++..++.++.++|+.+|++||++|||++++.++.|+|+ ++..
T Consensus 276 ~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~ 354 (449)
T KOG1304|consen 276 PFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF 354 (449)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc
Confidence 999999999999999999999999999999999999999 5543
Q ss_pred ----------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCC---CchhhHHHHHHHHHHH
Q 039811 280 ----------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI---STTGDRIIATVMMVLA 340 (360)
Q Consensus 280 ----------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~---~~~~~~~~~~~~~~~G 340 (360)
+++++.+|..+||++.+++++|+++++.+++++|+++|++...+. ..+|+.+.+.+++++|
T Consensus 355 ~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G 434 (449)
T KOG1304|consen 355 SENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFG 434 (449)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999865432 3468889999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 039811 341 VVTSTIAISTNIYGS 355 (360)
Q Consensus 341 ~~~~v~g~~~si~~i 355 (360)
++.++.|||+++.|+
T Consensus 435 ~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 435 VFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHhhhhhcC
Confidence 999999999999885
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-44 Score=340.01 Aligned_cols=333 Identities=20% Similarity=0.328 Sum_probs=274.2
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCHHHHHHHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG------ETSTYAGVMRES 91 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~------~~~~y~~l~~~~ 91 (360)
+++.|++++.+|.++.++|.|+|+||||++|.||+.|+++++..++++.||.++|.+|.+.+ ++.+|+|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999997743 456799999999
Q ss_pred cChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccc-cccchHHHHHHHHHHHHhhhhhhh----hhhHHHHH
Q 039811 92 FGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFH-WWNTRVIALLFVMVFVMLPLALFG----LVGYSAIS 166 (360)
Q Consensus 92 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s 166 (360)
||+++++++...+...+|+.|+.|++..+|+++.+.+...... ... .+.++ ++..++.+|+++.+ ++++|..+
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~-iif~~i~~~~s~lp~~~~l~~~S~~~ 192 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFI-IIFGLIVLPLSQLPNFHSLSYLSLVG 192 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehh-hhHHHHHHHHHHCCCcchhHHHHHHH
Confidence 9998899999999999999999999999999999988765443 332 33344 34556788999766 88888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-CC-CCCcccCccccccccccchhhhhhhhccccc----cccccCCCchHHHHHH
Q 039811 167 VLLAVMFVAICSVMAIYAVGEGKSK-SP-KLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRI 240 (360)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~ 240 (360)
.++++.+..+..... ..+|... .+ ...++. +.....+++++++.|+|.+|.. |++||+|++|+|++..
T Consensus 193 avmS~~~a~~~~~~g---~~~g~~~~~~~~~~~~~---~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~li 266 (437)
T KOG1303|consen 193 AVMSTLYAVILIVLG---IADGVGFCAPSGGYLDL---GTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLI 266 (437)
T ss_pred HHHHHHHHHHHHHHh---hccccccCCcccCcccC---CCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHH
Confidence 876666655544322 2222111 11 111111 1111117899999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhHhhCCC-CCCchH----------------------------------------
Q 039811 241 SLVLCTAIYFSVGLFGYLLFGESIMSDILVNFD-QSSGSA---------------------------------------- 279 (360)
Q Consensus 241 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~-~~~~~~---------------------------------------- 279 (360)
++.+++.+|+..++.||++|||+++++++.|++ +.....
T Consensus 267 s~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~ 346 (437)
T KOG1303|consen 267 SYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRS 346 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccc
Confidence 999999999999999999999999999999996 333221
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHH-HHHHHHHHHHH
Q 039811 280 -----------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVM-MVLAVVTSTIA 347 (360)
Q Consensus 280 -----------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~-~~~G~~~~v~g 347 (360)
+..+.++|+.+|+++++++++||+...++++++|+++|++.+|.++...+++.++.. +++|++.++..
T Consensus 347 ~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~ 426 (437)
T KOG1303|consen 347 LVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLA 426 (437)
T ss_pred cceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHH
Confidence 567789999999999999999999999999999999999987766666677777777 79999999999
Q ss_pred HHHHHHhhhcc
Q 039811 348 ISTNIYGSISN 358 (360)
Q Consensus 348 ~~~si~~i~~~ 358 (360)
...++++++.+
T Consensus 427 ~~~~~~~li~~ 437 (437)
T KOG1303|consen 427 AVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHhhC
Confidence 99998888753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.4e-46 Score=359.37 Aligned_cols=328 Identities=24% Similarity=0.475 Sum_probs=267.1
Q ss_pred CCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHHHcCh
Q 039811 19 KRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA----GETSTYAGVMRESFGR 94 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~----~~~~~y~~l~~~~~G~ 94 (360)
+|.|.+++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.|+++. ++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999874 5899999999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG----LVGYSAISVLLA 170 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~~ 170 (360)
++++++++++...++|.|++|+++.+|.++++++...+... ..+..+ .++..++.+|++++| +++.|.++.+ +
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~-~~~~~~-~~i~~~i~~pls~~~~l~~l~~~s~~~~~-~ 157 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLF-ISRYVW-IIIFALIVLPLSFLKNLKSLRYLSILGLF-S 157 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccccc-cccccc-ccccccccccccccchhhHHHHHhhhhhh-c
Confidence 99999999999999999999999999999999877554311 133333 345667899999998 5555555553 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcc--cCccccccccccchhhhhhhhccccc----cccccCCCchH---HHHHHH
Q 039811 171 VMFVAICSVMAIYAVGEGKSKSPKLLPQ--LDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMI---TAVRIS 241 (360)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~---~~~~~a 241 (360)
..+.++.. .+...++...++...+. ..+..++.++++++++++|+|.+|++ ++|||+|+|++ ++...+
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 158 IFYFIVIV---VIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSIS 234 (409)
T ss_pred cceeeeee---cceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeeh
Confidence 22211111 11222221111122111 12234566889999999999999999 99999999776 999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCchH------------------------------------------
Q 039811 242 LVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA------------------------------------------ 279 (360)
Q Consensus 242 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~------------------------------------------ 279 (360)
+.+++++|..+|+.||++||+++++|+++|+|++++..
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~ 314 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK 314 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc
Confidence 99999999999999999999999999999999987322
Q ss_pred ----------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhh-----HHHHHHHHH
Q 039811 280 ----------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGD-----RIIATVMMV 338 (360)
Q Consensus 280 ----------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~-----~~~~~~~~~ 338 (360)
+..+.++|..+|+++++++++|++++..++|++|+++|+|.+++++.+++ ....+..++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (409)
T PF01490_consen 315 NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIV 394 (409)
T ss_pred cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEE
Confidence 55678899999999999999999999999999999999997665443222 245788999
Q ss_pred HHHHHHHHHHHHHH
Q 039811 339 LAVVTSTIAISTNI 352 (360)
Q Consensus 339 ~G~~~~v~g~~~si 352 (360)
+|++.++.|+|+++
T Consensus 395 ~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 395 FGVVLMVFGTYQSI 408 (409)
T ss_pred EeeehhHHhHHHHc
Confidence 99999999999876
No 5
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=320.99 Aligned_cols=335 Identities=30% Similarity=0.514 Sum_probs=281.3
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~ 97 (360)
+++.|...+++|+.|+++|+|++++|++|++.|.+.|++++++++.++.++.+++.+++++.+..+|++++++.+|+.++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 45679999999999999999999999999999999999999999999999999999999988888999999999999998
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhcccc----ccchHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHH
Q 039811 98 VAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHW----WNTRVIALLFVMVFVMLPLALFG----LVGYSAISVLL 169 (360)
Q Consensus 98 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~ 169 (360)
....+.......| |++|+++++|.++.........++ |..|++.+.+....+++|+++.| +|+.|.++++.
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~ 161 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLAS 161 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888888888888 899999999999866544332222 45666655667788999999999 99999999864
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC--chHHHHHHHHH
Q 039811 170 AVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS--DMITAVRISLV 243 (360)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~--~~~~~~~~a~~ 243 (360)
.+ +.+..+ .+.....+...++..+...+...+.+.+.++|+++|+|.||+| ++|||||+ ++.++...+..
T Consensus 162 ~~-~fv~~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~ 237 (411)
T KOG1305|consen 162 VV-YFVVLV---VYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAII 237 (411)
T ss_pred HH-HHHHHH---HHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHH
Confidence 43 433332 2333222111112222222223336788999999999999999 99999999 69999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCchH--------------------------------------------
Q 039811 244 LCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA-------------------------------------------- 279 (360)
Q Consensus 244 ~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~-------------------------------------------- 279 (360)
.+.++|..+|.+||+.|||++++|++.|+++.+...
T Consensus 238 ~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~ 317 (411)
T KOG1305|consen 238 LATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT 317 (411)
T ss_pred HHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC
Confidence 999999999999999999999999999999887651
Q ss_pred --------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 039811 280 --------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTST 345 (360)
Q Consensus 280 --------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~v 345 (360)
+....+.|+++|+++++++++||+++..++|++|+++|+|..|+ +.+++...+...++|+...+
T Consensus 318 ~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i 395 (411)
T KOG1305|consen 318 SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSI 395 (411)
T ss_pred CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999997776 66788899999999999999
Q ss_pred HHHHHHHHhhhccC
Q 039811 346 IAISTNIYGSISNK 359 (360)
Q Consensus 346 ~g~~~si~~i~~~~ 359 (360)
.|+...++++..+.
T Consensus 396 ~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 396 IGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 6
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.3e-39 Score=313.65 Aligned_cols=328 Identities=12% Similarity=0.096 Sum_probs=248.6
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cC--C-------CCH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA----GE--T-------STY 84 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~----~~--~-------~~y 84 (360)
.+++|..++.+|++++.+|.|+|+||++|+++||++|++.++++++++.||.+++.++..+ ++ . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999987432 11 1 267
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh----hh
Q 039811 85 AGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG----LV 160 (360)
Q Consensus 85 ~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~----l~ 160 (360)
.|+++..+||+++.+..+....++++.|+.|++..++++..+- .+ . +++.++.+ ..++..|++++| ++
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----~~-~-~~~~~~~i-~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DN-L-DKRTWTYI-FGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----CC-c-CCCeEEee-hHHHHHHHHHccCHHHHH
Confidence 8999999999999999999999999999999999888766552 11 1 22223322 333556666666 66
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCCchHH
Q 039811 161 GYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMIT 236 (360)
Q Consensus 161 ~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~ 236 (360)
++|.+++..++.....++ +....++..++ .++ ....++..++.++++++|+|.+|.. ++|||||+||++
T Consensus 195 ~~S~ig~~~tl~~av~i~---i~~i~~~~~~~---~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~ 267 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMT---IAALSHGQVEG---VKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY 267 (473)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhcCCCC---CCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc
Confidence 666666532222111111 11111221111 111 0123344566777889999999998 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhHhhCCCCCCchH-----------------------------------
Q 039811 237 AVRISLVLCTAIYFSVGLFGYLLFGESIM--SDILVNFDQSSGSA----------------------------------- 279 (360)
Q Consensus 237 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~--~~il~n~~~~~~~~----------------------------------- 279 (360)
....+...+...|+.+++.||+.|||+++ ++.+.|+|++.+..
T Consensus 268 ~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k 347 (473)
T PLN03074 268 IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTK 347 (473)
T ss_pred hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccc
Confidence 99999999999999999999999999875 45677788665322
Q ss_pred ------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCC-------------Cch--hhHHH
Q 039811 280 ------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI-------------STT--GDRII 332 (360)
Q Consensus 280 ------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~-------------~~~--~~~~~ 332 (360)
++.++++|..+|+++++++++||++++.++|++|+++|++.++++ ..+ +..+.
T Consensus 348 ~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
T PLN03074 348 SICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVV 427 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhh
Confidence 456788999999999999999999999999999999999744321 112 23578
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhccCC
Q 039811 333 ATVMMVL-AVVTSTIAISTNIYGSISNKS 360 (360)
Q Consensus 333 ~~~~~~~-G~~~~v~g~~~si~~i~~~~~ 360 (360)
++.++++ |+++.+.|+|+|+.+++++++
T Consensus 428 n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 428 NAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred hhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 8888874 666679999999999998763
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-31 Score=253.60 Aligned_cols=329 Identities=20% Similarity=0.292 Sum_probs=260.6
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETS--TYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~--~y~~l~~~~~G~ 94 (360)
..++.+..++++++.++++|+|+|+||++++..|++.+++++++.+.+++++.+++.|+.++.+.. ++.+++++.+||
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~ 84 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGK 84 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCc
Confidence 456779999999999999999999999999999999999999999999999999999998876544 999999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG----LVGYSAISVLLA 170 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~~ 170 (360)
+++++.++...+.+|+.+.+|.+..+|.+++.+++.++.+. ..|+....++. .+..++++.+ +|+.+.+... .
T Consensus 85 ~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~-~~~~~l~~~~~~~~lk~ts~l~~~-~ 161 (415)
T COG0814 85 KGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFA-LVLAFLSWLGTLAVLKITSLLVFG-K 161 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHH-H
Confidence 99999999999999999999999999999999887665432 26665555444 4566688877 8888887764 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-c-hHHHHHHHHHH
Q 039811 171 VMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-D-MITAVRISLVL 244 (360)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~-~~~~~~~a~~~ 244 (360)
+.+.++. ..+...+.+...-...|... ...+..+..++|++.|+|.||++ ++|||+++ + .+|+...+..+
T Consensus 162 v~~~~~l---~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~ 237 (415)
T COG0814 162 VIYLVLL---VVYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLI 237 (415)
T ss_pred HHHHHHH---HHHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHH
Confidence 3333322 23333322111111122111 25566788999999999999999 89999888 4 99999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCchH---------------------------------------------
Q 039811 245 CTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA--------------------------------------------- 279 (360)
Q Consensus 245 ~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~--------------------------------------------- 279 (360)
..++|..++..+|..+|+++.+++++++++++...
T Consensus 238 ~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~ 317 (415)
T COG0814 238 ALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK 317 (415)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh
Confidence 99999999999999999999999999998776543
Q ss_pred ----------------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHH
Q 039811 280 ----------------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMM 337 (360)
Q Consensus 280 ----------------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~ 337 (360)
+.....++...|..+.+++.+|+.....+.++.|...+.|....+..+.++....+++
T Consensus 318 ~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~ 397 (415)
T COG0814 318 SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVL 397 (415)
T ss_pred ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHH
Confidence 2223456667777888888888888888888888877766544433333336888999
Q ss_pred HHHHHHHHHHHHHHH
Q 039811 338 VLAVVTSTIAISTNI 352 (360)
Q Consensus 338 ~~G~~~~v~g~~~si 352 (360)
++|+..++.-.+++.
T Consensus 398 ~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 398 LFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888877654
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=254.81 Aligned_cols=331 Identities=16% Similarity=0.226 Sum_probs=275.2
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCCHHHHHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG--------ETSTYAGVMR 89 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~--------~~~~y~~l~~ 89 (360)
..+.+.+|+..|..|++=|.=+++||+|...+||+ ++..++.++.+++||..+|++|-... .+++|.++++
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 35779999999999999999999999999999997 99999999999999999999996543 2679999999
Q ss_pred HHcCh-hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh-hhhHHHHHH
Q 039811 90 ESFGR-AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG-LVGYSAISV 167 (360)
Q Consensus 90 ~~~G~-~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-l~~~s~~s~ 167 (360)
..+++ .|.+.+.+.++..+..+|+.|.+..+|.+...++... . +++-|+++ ....++|..+.| |+-+|.+|+
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s---v--d~~sWm~i-~~a~LLpc~FLk~Lk~VS~lSf 266 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS---V--DKASWMMI-TSASLLPCSFLKDLKIVSRLSF 266 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC---c--cccchhhh-hhHHHhhhHHHHHHHHHHHHHH
Confidence 98875 6679999999999999999999999998887765421 1 22224444 445789999999 999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCCchHHHHHHHHH
Q 039811 168 LLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRISLV 243 (360)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~a~~ 243 (360)
.+...=+++-.+.+.|.+.. ..+..+. .++-..+..++-.++++++|+|..|.- ..+|++|++|...+..+=.
T Consensus 267 ~ct~sH~viN~i~v~YCLs~--~~dW~ws-kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHI 343 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSF--VSDWSWS-KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhccce-eEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHH
Confidence 76655555555545555432 1111111 122222333455678999999998876 8889999999888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCchH--------------------------------------------
Q 039811 244 LCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA-------------------------------------------- 279 (360)
Q Consensus 244 ~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~-------------------------------------------- 279 (360)
...++-..+|.+||++|+|.+|..+++|+|++....
T Consensus 344 AAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~ 423 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSP 423 (524)
T ss_pred HHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCC
Confidence 899999999999999999999999999999977643
Q ss_pred ---------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHHHHHHHHH
Q 039811 280 ---------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTS 344 (360)
Q Consensus 280 ---------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~ 344 (360)
++++.+.|+.+|.+...++++|++.++.++|+.|+++|++..+++..+.++..+..+++.|+.++
T Consensus 424 Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~ 503 (524)
T KOG4303|consen 424 DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVC 503 (524)
T ss_pred CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEE
Confidence 67789999999999999999999999999999999999998888777888999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 039811 345 TIAISTNIYGSISN 358 (360)
Q Consensus 345 v~g~~~si~~i~~~ 358 (360)
+.|.|.|..++++.
T Consensus 504 vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 504 VSGVYFSSMELIRA 517 (524)
T ss_pred EEeEehhhHHHHHH
Confidence 99999999999874
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.90 E-value=4.6e-21 Score=182.30 Aligned_cols=321 Identities=18% Similarity=0.291 Sum_probs=217.4
Q ss_pred CCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHHcChhHH
Q 039811 19 KRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG-ETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G~~g~ 97 (360)
++.+.+++++.+..+++|+|+|+||.+.+..|+.++++++++++.++.+|..++.|...+. +..+|.+++++.+||+|+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 4668899999999999999999999999999999999999999999999999999987654 689999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039811 98 VAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAIC 177 (360)
Q Consensus 98 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~~~ 177 (360)
++..+...+..|+.+++|..-.++.+++.++...+.+. .++....++ .++...+.....|.+..+...+....++..
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~--~~~~~~~~f-~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~ 157 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDL--SPWLSSLLF-TIIFGGIVYFGTKAVDRINRVLVFGMIISF 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCC--cHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877654332 333222222 222333333332222222221111111111
Q ss_pred HHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----ccccc-CCCchHHHHHHHHHHHHHHHHHH
Q 039811 178 SVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELD-KPSDMITAVRISLVLCTAIYFSV 252 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~-~~~~~~~~~~~a~~~~~~~y~~~ 252 (360)
.....+...+ .+.++.........++...+.++|+..++|..|+. .+.++ |++|.+|++..+..+..++|++.
T Consensus 158 ~~l~~~~~p~--~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 158 IILVVYLIPH--WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHhhh--cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111121211 11111111111234566778899999999999998 33344 55688999999999888888875
Q ss_pred H--HHHHh---------hcCCCchh--hHhhCCCCCCchH----------------------------------------
Q 039811 253 G--LFGYL---------LFGESIMS--DILVNFDQSSGSA---------------------------------------- 279 (360)
Q Consensus 253 g--~~gy~---------~fG~~~~~--~il~n~~~~~~~~---------------------------------------- 279 (360)
- ++|-+ .-+++..+ ..+.+...+++..
T Consensus 236 ~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~~~~r~ 315 (394)
T PF03222_consen 236 VFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNNSSGRL 315 (394)
T ss_pred HHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchH
Confidence 3 33311 11111111 1233333333322
Q ss_pred ------HHHHHHHHHhcCC-HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCc-----hhhHHHHHHHHHHHHHHHH
Q 039811 280 ------IIFSYTAAIMIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGIST-----TGDRIIATVMMVLAVVTST 345 (360)
Q Consensus 280 ------i~~~~~ia~~~p~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~-----~~~~~~~~~~~~~G~~~~v 345 (360)
.+..+++|...|+ +...+++.| .....+..++|+++.+|.|+++.. ...+.....++.+|++..+
T Consensus 316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~iii 392 (394)
T PF03222_consen 316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILIII 392 (394)
T ss_pred HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHHH
Confidence 3455778888888 678999999 899999999999999996544322 2356666666677666544
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.90 E-value=7e-21 Score=179.53 Aligned_cols=325 Identities=15% Similarity=0.164 Sum_probs=218.0
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHHcChhH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG-ETSTYAGVMRESFGRAG 96 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G~~g 96 (360)
+||.+.+.+.+.+..|++|+|||+||.+-++.|+.++++++++++.++.||..++.|+..+. +..++..++|+.+||+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 44558888999999999999999999999999999999999999999999999999996654 78889999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 039811 97 SVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAI 176 (360)
Q Consensus 97 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~~ 176 (360)
+.+..+...+..|+.+++|+.-.++.+++.+++..+.+. .++. ..++..++..++.+...+.+..+.-++. ...++
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i--~~~~-~~llF~~~~~~~v~~gt~~vd~~nr~l~-~~~ii 161 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISMNLGYHA--NPRI-VGICTAIFVASVLWISSLAASRITSLFL-GLKII 161 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCC--cHHH-HHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988765332221 2222 2223333444444433333333333221 12222
Q ss_pred HHHHHHHHHhcCCCCCCCCC--cccCcccc-ccccccchhhhhhhhccccc----cccc-cCCCchHHHHHHHHHHHHHH
Q 039811 177 CSVMAIYAVGEGKSKSPKLL--PQLDNHVS-LFDLFPAVPVIVTAFTFYFN----GFEL-DKPSDMITAVRISLVLCTAI 248 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~i~~faf~~~~~----~~~m-~~~~~~~~~~~~a~~~~~~~ 248 (360)
.++..+.....+ .+.+... +.....+. +...+.++|++.++|.+|++ .+.+ +|++|.+|++.....+..++
T Consensus 162 ~f~~~~~~l~~~-i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLvi 240 (415)
T PRK09664 162 SFVIVFGSFFFQ-VDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVI 240 (415)
T ss_pred HHHHHHHHHhhc-ccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 222112222111 1111111 10000000 12366789999999999999 2223 45568888888888888888
Q ss_pred HHH--HHHHHHh---------hcCCCchhhHh---hCCCCCCchH-----------------------------------
Q 039811 249 YFS--VGLFGYL---------LFGESIMSDIL---VNFDQSSGSA----------------------------------- 279 (360)
Q Consensus 249 y~~--~g~~gy~---------~fG~~~~~~il---~n~~~~~~~~----------------------------------- 279 (360)
|++ ..++|-. .-|++++..+. .+ .++++..
T Consensus 241 Y~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~ 319 (415)
T PRK09664 241 YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS 319 (415)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 854 3333311 22333333111 12 1222111
Q ss_pred -----------HHHHHHHHHhcCC-HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCC-CC----chhhHHHHHHHHHHHHH
Q 039811 280 -----------IIFSYTAAIMIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG-IS----TTGDRIIATVMMVLAVV 342 (360)
Q Consensus 280 -----------i~~~~~ia~~~p~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~-~~----~~~~~~~~~~~~~~G~~ 342 (360)
.+..++.+...|+ +-..++..|.. +..+.-++|+++-+|.||+ .. -...+....+++.+|++
T Consensus 320 ~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ 398 (415)
T PRK09664 320 HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGIT 398 (415)
T ss_pred cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHH
Confidence 4566889999998 78899999986 6689999999999997654 21 13477778888888887
Q ss_pred HHHHHHH
Q 039811 343 TSTIAIS 349 (360)
Q Consensus 343 ~~v~g~~ 349 (360)
..+.-..
T Consensus 399 ii~~~~~ 405 (415)
T PRK09664 399 VILCWFG 405 (415)
T ss_pred HHHHHHH
Confidence 7766443
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.89 E-value=1.3e-20 Score=177.81 Aligned_cols=327 Identities=14% Similarity=0.165 Sum_probs=219.9
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 95 (360)
++++.+...+.+.+..+++|+|||++|.+-++.|+.++++++++++.++.||..++.|+..+ .+..++..++|+.+||.
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG 86 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence 46678999999999999999999999999999999999999999999999999999999665 56789999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVA 175 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~ 175 (360)
|+.+..++..+..|+.+++|+.-.+|.+++.+++ .+.+. .++. ..++..++.-.+.+...+.+..+.-++.. ..+
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~~i--~~~~-~~llF~~~~~~iv~~gt~~vd~~n~~l~~-~~i 161 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSLNV--PARA-AGFGFALLVAFVVWLSTKAVSRMTAIVLG-AKV 161 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCCCC--cHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999988776 33221 2222 22222223333443333333333332111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcc-cCccccccccccchhhhhhhhccccc----cccc-cCCCchHHHHHHHHHHHHHHH
Q 039811 176 ICSVMAIYAVGEGKSKSPKLLPQ-LDNHVSLFDLFPAVPVIVTAFTFYFN----GFEL-DKPSDMITAVRISLVLCTAIY 249 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m-~~~~~~~~~~~~a~~~~~~~y 249 (360)
+.++..+.....+ .+..+.... ..+...+...+.++|+..++|.+|++ .+.+ +|++|.+|++..+..+..++|
T Consensus 162 ~~f~~~~~~l~~~-i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~y 240 (414)
T PRK10483 162 ITFFLTFGSLLGH-VQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALY 240 (414)
T ss_pred HHHHHHHHHHHhh-cCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 1111122222221 221111110 11112233466899999999999998 3333 345599999999999999999
Q ss_pred HHHHHHHHhhc-----------CCCchh--hHhhCCCCCCchH-------------------------------------
Q 039811 250 FSVGLFGYLLF-----------GESIMS--DILVNFDQSSGSA------------------------------------- 279 (360)
Q Consensus 250 ~~~g~~gy~~f-----------G~~~~~--~il~n~~~~~~~~------------------------------------- 279 (360)
++.-..+...- |++.+. +.+.+-.++++..
T Consensus 241 l~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~~ 320 (414)
T PRK10483 241 TIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAM 320 (414)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 88444333322 222211 1112222222211
Q ss_pred ---------HHHHHHHHHhcCC-HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCC-CCc----hhhHHHHHHHHHHHHHHH
Q 039811 280 ---------IIFSYTAAIMIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG-IST----TGDRIIATVMMVLAVVTS 344 (360)
Q Consensus 280 ---------i~~~~~ia~~~p~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~-~~~----~~~~~~~~~~~~~G~~~~ 344 (360)
.+..+++|...|+ +-..+++.|.. +..+.-++|+++.+|.||+ ... ...+....+++.+|+...
T Consensus 321 ~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i 399 (414)
T PRK10483 321 GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNA 399 (414)
T ss_pred cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHH
Confidence 4566889999998 77899999976 6788899999999997654 111 235555577777777766
Q ss_pred HHHHHH
Q 039811 345 TIAIST 350 (360)
Q Consensus 345 v~g~~~ 350 (360)
+.-...
T Consensus 400 ~~~i~~ 405 (414)
T PRK10483 400 LVHILS 405 (414)
T ss_pred HHHHHH
Confidence 655433
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.89 E-value=2.5e-20 Score=176.63 Aligned_cols=319 Identities=15% Similarity=0.196 Sum_probs=213.9
Q ss_pred CchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChhHHHH
Q 039811 21 PWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~g~~~ 99 (360)
.+...+.+.+..|++|+|+|+||.+.++.|++++++++++++.++.|+.+++.|+..+ .+..++.+++|+.+||+|+++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 3778899999999999999999999999999999999999999999999999997554 356889999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSV 179 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~~~~~ 179 (360)
..+...+..|..+.+|..-.++.+.+.++++.+.+. ..+...+++.++... ..+...|.+..+.-++....++ .++
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i--~~~~~~l~F~~~~~~-iv~~g~~~v~~~n~~L~~~~ii-~~~ 158 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISM--SPTAGVLLFTLVAGG-VVCVGTSSVDLFNRFLFSAKII-FLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999888776544321 122222222222222 2222222222222211111111 111
Q ss_pred HHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----ccccc-CCCchHHHHHHHHHHHHHHHHHHHH
Q 039811 180 MAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELD-KPSDMITAVRISLVLCTAIYFSVGL 254 (360)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~-~~~~~~~~~~~a~~~~~~~y~~~g~ 254 (360)
........+ .+..+... .+ .+....+.++|++.++|+.|++ .+.++ +++|.+|++..+..+..++|++.-.
T Consensus 159 ~~~~~l~p~-~~~~~L~~-~~--~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~ 234 (403)
T PRK15132 159 VMLALMMPH-IHKVNLLT-LP--LQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQL 234 (403)
T ss_pred HHHHHHHHh-cCHHHHhc-CC--ccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122211 22111111 00 0111367899999999999999 33333 4458899999999999998887666
Q ss_pred HHHhhcCCCc-h---------hhHhhCC---CCCCchH------------------------------------------
Q 039811 255 FGYLLFGESI-M---------SDILVNF---DQSSGSA------------------------------------------ 279 (360)
Q Consensus 255 ~gy~~fG~~~-~---------~~il~n~---~~~~~~~------------------------------------------ 279 (360)
.+...-+.+. + +++++.+ .++++..
T Consensus 235 ~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~~r~~~ 314 (403)
T PRK15132 235 ATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVGGRLQT 314 (403)
T ss_pred HHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCchh
Confidence 5555443221 0 0122222 1222211
Q ss_pred ----HHHHHHHHHhcCC-HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCC-C-chh---hHHHHHHHHHHHHHHHHHHH
Q 039811 280 ----IIFSYTAAIMIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI-S-TTG---DRIIATVMMVLAVVTSTIAI 348 (360)
Q Consensus 280 ----i~~~~~ia~~~p~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~-~-~~~---~~~~~~~~~~~G~~~~v~g~ 348 (360)
.+..+++|...|+ +...+++.|. ....+.+++|+++.+|.|+++ . ..+ .+...++++.+|++..+.-.
T Consensus 315 ~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 315 GLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 4566889999998 6778999886 577999999999999966543 1 222 67778888888888776544
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.86 E-value=8.1e-20 Score=174.43 Aligned_cols=291 Identities=17% Similarity=0.228 Sum_probs=198.1
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHHcChhHHHHHHHHHH
Q 039811 27 VFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG-ETSTYAGVMRESFGRAGSVAAQLCVM 105 (360)
Q Consensus 27 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G~~g~~~~~i~~~ 105 (360)
....+++++|+|++++|..+++.|...+++.+++.+.++.++..++.|...+. +..++.+++++++||+++++......
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999997654 57899999999999999999999999
Q ss_pred HHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039811 106 ITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAV 185 (360)
Q Consensus 106 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~~~~~~~~~~~ 185 (360)
..++..+.+|.+..++.+.+.++...+... .++... +...++..++.....+..+.++.+.....++..+.......
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~--~~~~~~-~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~ 159 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPW--SARAIV-LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLL 159 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCc--cHHHHH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888775443322 333332 22333444555443333333333211111111111111111
Q ss_pred hcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----ccccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039811 186 GEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELD-KPSDMITAVRISLVLCTAIYFSVGLFGYLLF 260 (360)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~-~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 260 (360)
.+ .+..+..|...+...+.+...+++...++|.+|.+ .++++ +|+|.+|+...+..++.++|.++.......+
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~ 237 (381)
T TIGR00837 160 PH--VKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNL 237 (381)
T ss_pred hh--ccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 11112222111112344677888999999988875 66776 4448999999999999999998876666555
Q ss_pred CCCchhhH-------------hhCCCCCCchH----------------------------------------------HH
Q 039811 261 GESIMSDI-------------LVNFDQSSGSA----------------------------------------------II 281 (360)
Q Consensus 261 G~~~~~~i-------------l~n~~~~~~~~----------------------------------------------i~ 281 (360)
+.+.-.+. ..+.-.+++.. .+
T Consensus 238 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~~~~~~~~~~~ 317 (381)
T TIGR00837 238 PRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKGRFKTGLLTFL 317 (381)
T ss_pred CHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchhhhhhHH
Confidence 43211111 11111111110 34
Q ss_pred HHHHHHHhcCCHH-HHHHhhhhhhhhHHHHHhhhHhhhhhcCC
Q 039811 282 FSYTAAIMIPDIW-YFFQFLGSTSAVCLAFIFPGVIVLRDVHG 323 (360)
Q Consensus 282 ~~~~ia~~~p~~~-~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~ 323 (360)
...++|.+.|+.. ..++..| +++..+.+++|+++++|.||+
T Consensus 318 ~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 318 PPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5577889999976 8899999 888899999999999986554
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.86 E-value=3e-19 Score=168.69 Aligned_cols=324 Identities=15% Similarity=0.187 Sum_probs=215.9
Q ss_pred CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHcChhHH
Q 039811 20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA--GETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~G~~g~ 97 (360)
+.......+.+.++.+|+|+|+||-.....|++++++++++++.++++++..+.|.... .+..++.+++++.+||+|+
T Consensus 18 ~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 18 RKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGG 97 (443)
T ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHH
Confidence 44555666999999999999999999999999999999999999999999999998543 4678999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHHH
Q 039811 98 VAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG----LVGYSAISVLLAVMF 173 (360)
Q Consensus 98 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~~~~~ 173 (360)
.+..++..+..|..+.+|...+.+.+.+.+.++.+.... .|+..-.+ ..+++....... .|..+.+-.. .
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~-~r~l~sli-fv~~l~~iv~~G~~~v~kv~~~Lv~~----~ 171 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPL-NRGFVALF-LLLLMAFVIWFGKDLMVKVMSYLVWP----F 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc-cHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHH----H
Confidence 999999999999999999988888887766655543111 34433333 222333333322 3333332221 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCc-----ccCccccccccccchhhhhhhhccccc------c--cccc-----C--CCc
Q 039811 174 VAICSVMAIYAVGEGKSKSPKLLP-----QLDNHVSLFDLFPAVPVIVTAFTFYFN------G--FELD-----K--PSD 233 (360)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~faf~~~~~------~--~~m~-----~--~~~ 233 (360)
++..+...++-..+-+.+.-...| ...+.......+.++|+..+||+.|++ + ++.+ + ++|
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 111111122222211111101111 000001112367788999999999998 2 2222 3 348
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-------hhh----HhhCCCCC--------CchH---------------
Q 039811 234 MITAVRISLVLCTAIYFSVGLFGYLLFGESI-------MSD----ILVNFDQS--------SGSA--------------- 279 (360)
Q Consensus 234 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-------~~~----il~n~~~~--------~~~~--------------- 279 (360)
.++++..+..+..++|++.-..+-...+++. +.+ ..+.+++. +...
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888887777777655332 112 11223321 2111
Q ss_pred ----------------------------------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhh
Q 039811 280 ----------------------------------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 319 (360)
Q Consensus 280 ----------------------------------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~ 319 (360)
.+.++.++..-|++-.+++-+|+.....+.|++|...-.|
T Consensus 332 lGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~k 411 (443)
T PRK13629 332 FGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRK 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 4456888999999999999888888889999999887666
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 039811 320 DVHGISTTGDRIIATVMMVLAVVTSTIAIST 350 (360)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~G~~~~v~g~~~ 350 (360)
...=+++ +.+..++++.+.|+++.....|.
T Consensus 412 vp~l~~y-r~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 412 APSLAKY-RGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred cHHHHHh-CCCchhHHHHHHHHHHHHHHHHh
Confidence 3222222 23446888999998887766553
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.77 E-value=9.7e-17 Score=152.54 Aligned_cols=314 Identities=17% Similarity=0.192 Sum_probs=205.2
Q ss_pred chHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHHcChhHHHH
Q 039811 22 WVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH--AGETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~--~~~~~~y~~l~~~~~G~~g~~~ 99 (360)
......+.+.++++|+|+|++|...++.||+..++..++...+++++..++.|... +.+..++.|++++.+||+++.+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999833 3347899999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSV 179 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~~~~~ 179 (360)
..+...+..+..+.+|....++.+.+.+.+..+.+. ..+.+..++..++..-......+.+..++-++....++....
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~--p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~ 161 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAP--PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVL 161 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888776544321 122222221211111222212344433333221111221111
Q ss_pred HHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc-------c-ccccCC----CchHHHHHHHHHHHHH
Q 039811 180 MAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN-------G-FELDKP----SDMITAVRISLVLCTA 247 (360)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~-------~-~~m~~~----~~~~~~~~~a~~~~~~ 247 (360)
..++...+-+.+.-...|. ....+.+...++++..+||.+|+. | ++.++| +|.+|....+..+..+
T Consensus 162 l~~~lip~~~~~~L~~~p~--~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~ 239 (397)
T TIGR00814 162 LSLYLIPHWNGANLTTFPS--FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA 239 (397)
T ss_pred HHHHHHHHcCHHHHhcCCc--ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 1222222211111111221 112345688899999999999998 2 333323 3778999999999999
Q ss_pred HHHHHHHHHHhhcCCCchh-------hHhh---CCCCCCchH--------------------------------------
Q 039811 248 IYFSVGLFGYLLFGESIMS-------DILV---NFDQSSGSA-------------------------------------- 279 (360)
Q Consensus 248 ~y~~~g~~gy~~fG~~~~~-------~il~---n~~~~~~~~-------------------------------------- 279 (360)
+|+..-..+....+.+.-. +.+. |-.+++...
T Consensus 240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~ 319 (397)
T TIGR00814 240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKG 319 (397)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 9998888777776643311 1121 111222211
Q ss_pred ----------------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHHHHH
Q 039811 280 ----------------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLA 340 (360)
Q Consensus 280 ----------------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~G 340 (360)
.+.++.++..-|++-.+++-+|+.....+.|++|...-.|...=++ .+.+..++++...|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~-~~~~~~~~fv~~~g 395 (397)
T TIGR00814 320 KKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKK-YRGRISNVFVTVIG 395 (397)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHH-hCCCcchheeEeee
Confidence 4456888999999999999888888889999999887665322111 12233455555554
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.34 E-value=4.9e-09 Score=102.10 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=136.9
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (360)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|... .++.....+.+++.+||+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 45788999999999999999999999999988886 4677778888888888888888654 345667788889999998
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~ 172 (360)
..++......+.......++.....+.+...++. . ......++ ....+...+...+ .|..+.+..+....
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~-~~~~~~~~--~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGA----T-LSPVQICL--ATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c-cchHHHHH--HHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8887777665555544444333333333333221 1 00111111 1111222222222 33333333221111
Q ss_pred --HHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHH
Q 039811 173 --FVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLC 245 (360)
Q Consensus 173 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~ 245 (360)
..++.+........+.+...+...| .....+.++..++....|+|.+-.. -+|+|||+ +.+|++..+..++
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~ 233 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGA 233 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHH
Confidence 1111111111111111111111111 1111123455567778899988777 78899998 8999999999999
Q ss_pred HHHHHHHHHHHH
Q 039811 246 TAIYFSVGLFGY 257 (360)
Q Consensus 246 ~~~y~~~g~~gy 257 (360)
.++|++......
T Consensus 234 ~~~Y~l~~~~~~ 245 (438)
T PRK10655 234 AVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999998765444
No 17
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.30 E-value=2.2e-09 Score=101.76 Aligned_cols=234 Identities=11% Similarity=0.182 Sum_probs=148.9
Q ss_pred CCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHH
Q 039811 19 KRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSV 98 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~ 98 (360)
++.|.+|..+.+.++++|+|++.+|....+.+--.+++..++.+.+.......+.+..++.+.++..|..++.+||+..+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 46789999999999999999999999887644335666777788888888888888887776779999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHH
Q 039811 99 AAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG-LVGYSAISVLLAVMFVAIC 177 (360)
Q Consensus 99 ~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-l~~~s~~s~~~~~~~~~~~ 177 (360)
+.......+....+.......++.++..... ++ ... .. .+..++..-....+ .+..+.++.+.....+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~t----p~~-~~-~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~ 152 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLP--RT----PII-VI-IILIIIVSIYIVRKGIEVLLRTAEILLIIFLILF 152 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC----CHH-HH-HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 9888877777666655555555544332111 11 111 11 11111111112223 5555555554322222221
Q ss_pred HHHHHHHHhcCCCCCCCCCcccCccccccccccchh-hhhhhhccccc----cccccCCCchHHHHHHHHHHHHHHHHHH
Q 039811 178 SVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVP-VIVTAFTFYFN----GFELDKPSDMITAVRISLVLCTAIYFSV 252 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~faf~~~~~----~~~m~~~~~~~~~~~~a~~~~~~~y~~~ 252 (360)
+..... ...+..+..+..|-. ++++.+...+.- ...++|.+... ..++|||+|.+|+...+..++.++|...
T Consensus 153 ~~il~~-~~~~~~~~~~l~P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 153 ILVLIL-LAPKLGNIKNLLPVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHH-HhcccccHHHccCcc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 111111 111111222333422 233444444443 66777765544 7778888899999999999999999999
Q ss_pred HHHHHhhcCCC
Q 039811 253 GLFGYLLFGES 263 (360)
Q Consensus 253 g~~gy~~fG~~ 263 (360)
-......+|.+
T Consensus 230 ~~~~i~~lg~~ 240 (359)
T TIGR00912 230 TFVSISVFGGN 240 (359)
T ss_pred HHHHHheecHH
Confidence 88888888854
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.30 E-value=7.7e-09 Score=100.91 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=133.2
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (360)
.+|+.+.++.+...+++++|+|++.+|....+.|- ..+...++.++........+.|.+. .++.....+-+++.+||.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 46778999999999999999999999999888764 2445555556666666667777644 445556666699999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~ 172 (360)
..++......+.......+......+......+. .+ .+.... +....+...+...+ .|....+..+....
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~-~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-LK-----DPLVLT-ITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC-----CcHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 8888776666554433333333333333222221 11 111111 11112222333333 34443333322111
Q ss_pred HHHHHHHHHHHH--HhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHH
Q 039811 173 FVAICSVMAIYA--VGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLC 245 (360)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~ 245 (360)
-++..++..... ..+++...+. ++ ..+.+.+.++..++....|+|.+-.. -+|+|||+ +.+|++..+..++
T Consensus 158 ~~i~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~ 235 (445)
T PRK10644 158 ALIPIVGIAVFGWFWFRGETYMAA-WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235 (445)
T ss_pred HHHHHHHHHHHHHHHhCchhccCC-cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHH
Confidence 111111111111 1121110111 11 11112233455567778899988776 78899998 7999999999999
Q ss_pred HHHHHHHHHHHHh
Q 039811 246 TAIYFSVGLFGYL 258 (360)
Q Consensus 246 ~~~y~~~g~~gy~ 258 (360)
.++|.+.......
T Consensus 236 ~v~Y~l~~~~~~~ 248 (445)
T PRK10644 236 AVCYVLSSTAIMG 248 (445)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988776443
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.28 E-value=1.4e-08 Score=99.79 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=138.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-CCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVL-GVIPAFVLIVIIAWLTDVSVEILMRYTHA-GE-TSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~-G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~-~~~y~~l~~~~~G 93 (360)
++|+.|.+++....+++++|+|++.+|....+. |-...++..++.++..........|...+ ++ .....+..++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 467899999999999999999999999998754 43334455666777777777777887554 44 4557778899999
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLA 170 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~ 170 (360)
|+..++...............+.....+.+....+.. +.+. ...... ....+...+...+ .|..+.+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-~~~~--~~~~~~--~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-GSGN--PVPSIL--GASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCC--cHHHHH--HHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9988888877766555555555555555444444321 1110 111111 1112222222222 444433333221
Q ss_pred HH---HHHHHHHHHHHHHhcCCCCCCCCCccc--Cccccccccccchhhhhhhhccccc----cccccCCCchHHHHHHH
Q 039811 171 VM---FVAICSVMAIYAVGEGKSKSPKLLPQL--DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRIS 241 (360)
Q Consensus 171 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~a 241 (360)
.. .++..++..+. ..+++....+..++. ...+.+..+..++....++|.+-.. .+|+||+++.+|++..+
T Consensus 160 ~~~l~~l~~~ii~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~ 238 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWF-WFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLG 238 (473)
T ss_pred HHHHHHHHHHHHHHHH-HhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHH
Confidence 11 11111111111 122211000111110 0112234556677778899988777 67889955899999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 039811 242 LVLCTAIYFSVGLFGYLL 259 (360)
Q Consensus 242 ~~~~~~~y~~~g~~gy~~ 259 (360)
..++.++|.+........
T Consensus 239 ~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 239 TLGALVIYILITLLSLGV 256 (473)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999877664443
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.26 E-value=3.7e-08 Score=96.69 Aligned_cols=236 Identities=14% Similarity=0.097 Sum_probs=135.5
Q ss_pred CCCchHHHHHHHHHHHHhHhHhHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCC-CHHHHHHHHcChh
Q 039811 19 KRPWVSGAVFNVATSIIGAGIMSIAATVK-VLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG-ETS-TYAGVMRESFGRA 95 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~-~~~-~y~~l~~~~~G~~ 95 (360)
|+.+.++.....+++++|+|++.+|.... .+|....++..++.++........+.|.+.+. +.. ...+.+++.+||.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57789999999999999999999998866 45644445556777777777778888876543 333 6777799999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhh--hh-hhhHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLAL--FG-LVGYSAISVLLAVM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~-l~~~s~~s~~~~~~ 172 (360)
..++..-..+.........+.....+.+....+...+.+ ....+.. ..++..-+.. .+ .|..+.+..+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~--~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN---NPPSIIG--ASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---cHHHHHH--HHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 988888777665544455555444443333322211110 1111111 1111112222 22 44444433322211
Q ss_pred ---HHHHHHHHHHHHHhcCCCCCCCCCccc----Cccccccccccchhhhhhhhccccc----cccccCCCchHHHHHHH
Q 039811 173 ---FVAICSVMAIYAVGEGKSKSPKLLPQL----DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRIS 241 (360)
Q Consensus 173 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~a 241 (360)
.++..++.... ..+++.-.++..++. ...+.+.++..++....++|.+-.. .+|.|||++.+|++..+
T Consensus 156 ki~~l~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 156 KLVPLFVFIVIGIF-AFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHH-HhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 11111111111 112211111111110 0111223344667778899988776 56778777899999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 039811 242 LVLCTAIYFSVGLFGYLLF 260 (360)
Q Consensus 242 ~~~~~~~y~~~g~~gy~~f 260 (360)
...+.++|....+..+...
T Consensus 235 ~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 9999999999887766544
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.24 E-value=2.5e-08 Score=96.96 Aligned_cols=232 Identities=13% Similarity=0.008 Sum_probs=137.2
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (360)
++|+.+.++.....+++++|+|++.+|...++.|-. .++..++.++..........|.+. .++.....+.+++ +|+.
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 457789999999999999999999999999988864 556666667777777777777644 4455566667777 7998
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~ 172 (360)
..+.+.............++.....+.+....+.. +.++ ....+ ...+...+...+ .|..+.+..+....
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-~~~~--~~~~~----~~~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-NDPI--PAGIA----CIAIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CChH--HHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88877766554443333444344444443332211 1111 11111 111122222222 44444444322211
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHH
Q 039811 173 FVAICSVMAIYAVGEGKSK--SPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLC 245 (360)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~ 245 (360)
.++..++..+....+.+.+ .+++.+ ..+.++.++..++....|+|.+-.. -+|+|||+ +.+|++..+..++
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv 231 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHH
Confidence 1111111111111111110 011111 1123455677888889999998887 88999997 7999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 039811 246 TAIYFSVGLFGYLL 259 (360)
Q Consensus 246 ~~~y~~~g~~gy~~ 259 (360)
.++|.+........
T Consensus 232 ~ilYil~~~~~~~~ 245 (435)
T PRK10435 232 GIIYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999887765443
No 22
>PRK11021 putative transporter; Provisional
Probab=99.14 E-value=1.9e-07 Score=90.18 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHhHhHhHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChhHHHH
Q 039811 22 WVSGAVFNVATSIIGAGIMSIAATVKVL-GVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~lP~~f~~~-G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~g~~~ 99 (360)
+.+++....+++++|+|++.+|-...+. |- .+++..++.+++.........|.+. .++.......+++.+||+..++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 6789999999999999999999877644 64 4677777788888888888888754 4566778889999999988887
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHH
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVMFVAI 176 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~~~~~ 176 (360)
..-...........+......+.+... .+.+. .......+. +...+...+ .|....+..+.....+ .
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~---~~~~~~~ln~~Gv~~~~~~~~~~~~~~~-~ 150 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQAL----FGWSS--WQLLLAELL---TLALLWLLNLRGASSSANLQTVIALLIV-A 150 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH----cCCCC--chHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHH-H
Confidence 776665433222222222333332222 22111 111111111 111122222 4555544443222111 1
Q ss_pred HHHHHHHHHhcCCCCCCCC-CcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHHHHH
Q 039811 177 CSVMAIYAVGEGKSKSPKL-LPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTAIYF 250 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~~y~ 250 (360)
.+. ... ..++.+..+. .++. ...++.++..++....++|.+... -+|+|||+ +.+|++..+..++.++|.
T Consensus 151 i~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYi 226 (410)
T PRK11021 151 LVV-AIW--WAGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYW 226 (410)
T ss_pred HHH-HHH--HHcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHH
Confidence 111 111 1121111111 1111 123455677888889999998887 78999998 799999999999999999
Q ss_pred HHHHH
Q 039811 251 SVGLF 255 (360)
Q Consensus 251 ~~g~~ 255 (360)
+....
T Consensus 227 l~~~~ 231 (410)
T PRK11021 227 ACTVV 231 (410)
T ss_pred HHHHH
Confidence 97755
No 23
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.12 E-value=4.1e-08 Score=103.05 Aligned_cols=238 Identities=13% Similarity=0.091 Sum_probs=150.3
Q ss_pred CCCCCchHHHHHHH-HHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNV-ATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA--GETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l-~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~ 92 (360)
+.++.+++++++.- +.+++|+|++ .+++...++|...+++..++.++++..+..-+.+.+.. .+...-..+.++++
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 35688999999888 9999999998 67777779998888999999999999999999887664 45555667789999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhc---cccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCG---FHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLL 169 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~ 169 (360)
|+.....+.....+.+...+..|.+..++.+..+++.... .......+.+. ++.++++.-+.+...++.+.+..++
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia-~i~l~ll~~In~~Gvk~~ak~q~vl 232 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYG-TVTVVVLLGISFAGMEWENKAQVLF 232 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988888888888888888888988888888776543110 00111122222 1222222333333366666655543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-----C-----CCccc-Ccccccc-ccccchhhhhhhhccccc----cccccCCC-
Q 039811 170 AVMFVAICSVMAIYAVGEGKSKSP-----K-----LLPQL-DNHVSLF-DLFPAVPVIVTAFTFYFN----GFELDKPS- 232 (360)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~-~~~~~~~-~~~~~~~i~~faf~~~~~----~~~m~~~~- 232 (360)
.++-++..+. .+...+....+.+ . ..++. +...+.. +++..++++..||.+... -.|+|||+
T Consensus 233 ~vi~ll~ll~-~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 233 LVIVLLSILN-IFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHH-HHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 2221211111 1111111100000 0 00000 0011111 255566666667776554 78999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 039811 233 DMITAVRISLVLCTAIYFSVGLFG 256 (360)
Q Consensus 233 ~~~~~~~~a~~~~~~~y~~~g~~g 256 (360)
..++++..++.+++++|+++.+..
T Consensus 312 ~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 312 AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999987643
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.12 E-value=1.6e-07 Score=91.28 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=141.2
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChh
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKV-LGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRA 95 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~-~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 95 (360)
+|+.+.++.+...+++++|+|++.+|..... +|. ..++..++.++........+.|..++ ++.....+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 4678999999999999999999999976653 454 34555666677777777778887554 45567778889999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhh-hccc-ccc-----chHH-HHHHHHHHHHhhhhhhhhhhHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEW-CGFH-WWN-----TRVI-ALLFVMVFVMLPLALFGLVGYSAISV 167 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~-~~~-----~~~~-~~~~~~~~~~~pl~~~~l~~~s~~s~ 167 (360)
..++......+.....+..+....++.+...++.. .+.+ +.. .... +..+....+..-+.....|....+..
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~ 160 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVND 160 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99988888887777777777777777776665421 0011 100 0011 11111111111222222333333332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHH
Q 039811 168 LLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISL 242 (360)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~ 242 (360)
+....-++..++.......+.+ ..+..|.. +.++.++..++....++|.+... .+|+|||+ +.+|++..+.
T Consensus 161 v~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 161 ILVVLKVAALLLFAALGAIHFA--SNNYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHhhhHHHhhCc--HHhcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 2111111111111111111111 11111111 12344566778888999987766 78999997 7899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 039811 243 VLCTAIYFSVGLFGYL 258 (360)
Q Consensus 243 ~~~~~~y~~~g~~gy~ 258 (360)
.++.++|+........
T Consensus 237 ~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 237 IVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988765543
No 25
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.09 E-value=2.5e-07 Score=90.90 Aligned_cols=235 Identities=14% Similarity=0.076 Sum_probs=132.3
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATV-KVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f-~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (360)
-+|+.+.++.....+++++|+|++..|-.. +.+|-...++..++.+++.......+.|.+. .++...+.+.+++.+|+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 367789999999999999999999777665 5678544566677788888888888888654 45666788899999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---H
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLA---V 171 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~---~ 171 (360)
...+++.-..++.....+.......+..+. .+.+ +. ....+..++ .++..-+.+...|..+.....+. +
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~----~~~p-~~--~~~~~~~~~-~~~~~~in~~gvk~~~~~~~~~~~~ki 163 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQ----YWFP-QV--PVWPWCLLF-CALIFGLNVVSTRFFAEGEFWFSLIKV 163 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccC-cC--cHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 988877766665544444333333332221 1111 11 111111111 11122222221333332221111 1
Q ss_pred HHHHHHHHHHHHHHhcC-CCCC--C-CCCcccCc----cccccccccchhhhhhhhccccc----cccccCCC-chHHHH
Q 039811 172 MFVAICSVMAIYAVGEG-KSKS--P-KLLPQLDN----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAV 238 (360)
Q Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~ 238 (360)
..++..++..+...... ..++ + ...++.+. +++..++..++....|+|.+-.. -+|+|||+ +.++++
T Consensus 164 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 243 (471)
T PRK11387 164 VTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAI 243 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHH
Confidence 11111111111111110 0000 0 00111111 11223455666677888887776 78899999 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039811 239 RISLVLCTAIYFSVGLFGYLL 259 (360)
Q Consensus 239 ~~a~~~~~~~y~~~g~~gy~~ 259 (360)
..+..++.++|+.........
T Consensus 244 ~~~~~~~~~~y~~~~~~~~~~ 264 (471)
T PRK11387 244 RTTIARLVIFFVGTVLVLAAL 264 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999999876654433
No 26
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.08 E-value=1.2e-07 Score=88.39 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=153.2
Q ss_pred CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHH
Q 039811 20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~ 99 (360)
|.|..|....+..+.+|+|++.+|....+.+- .+++..++.+.......++..+..++.+.+|..|..++.+||+...+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 56899999999999999999999999876641 55555666666666777777888888889999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHH
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG-LVGYSAISVLLAVMFVAICS 178 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-l~~~s~~s~~~~~~~~~~~~ 178 (360)
..+....+.+......+...+|.++..+-..+ .+.... + ..++..--...+ ++.+...+-+......+..+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T------P~~~i~-~-~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~ 151 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPET------PIWVII-L-LFLLVAAYAARKGIEVIARVAEILFPIFLILLL 151 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC------CHHHHH-H-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777777776665432211 122111 1 111111112222 55555433322222222211
Q ss_pred HHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 039811 179 VMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRISLVLCTAIYFSVGL 254 (360)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~a~~~~~~~y~~~g~ 254 (360)
. +.....++.+..+..|-. ..++.+.+.+.....+.|.+... ....|+|+|.+|....+..++.++|...-.
T Consensus 152 ~--i~~~~~~~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 227 (320)
T PF03845_consen 152 L--ILLLSIPNIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIF 227 (320)
T ss_pred H--HHHHhcccCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222223323344422 24555677776666677765544 667788888999999999999999999888
Q ss_pred HHHhhcCCC
Q 039811 255 FGYLLFGES 263 (360)
Q Consensus 255 ~gy~~fG~~ 263 (360)
.....||.+
T Consensus 228 ~~i~vfG~~ 236 (320)
T PF03845_consen 228 ITIGVFGPE 236 (320)
T ss_pred HHHHhcCHH
Confidence 888888864
No 27
>PRK15049 L-asparagine permease; Provisional
Probab=99.06 E-value=5.1e-07 Score=89.29 Aligned_cols=235 Identities=13% Similarity=0.118 Sum_probs=131.2
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChh
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRA 95 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (360)
+|+.+.++..+..++.++|+|++..|. +.+++|- .+++..++.+++.......+.|.+. .++.....+.+++.+|++
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~ 105 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEK 105 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcH
Confidence 466799999999999999999998877 6667786 4567777788888888888888754 556778899999999998
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---HH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLA---VM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~---~~ 172 (360)
..+++.-..++........-....+...... +. ++ . ..+..+. +...++..-+.+...|....+..++. +.
T Consensus 106 ~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~-~~-~--~~~~~~~-~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 106 AAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA-FG-G--VPQWVFA-LAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CC-C--CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665543332222222222222111 10 11 0 0122111 11111222222222333333332211 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC--CcccCc-----cccccccccchhhhhhhhccccc----cccccCCC-chHHHHHH
Q 039811 173 FVAICSVMAIYAVGEGKSKSPKL--LPQLDN-----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRI 240 (360)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~ 240 (360)
.++..++..+.....+...+... ..+..+ ++++.+.+.++....|+|.+-.. -+|.|||+ +.+|++..
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~ 259 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINS 259 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH
Confidence 11111111111112221111000 000111 11222334445567888888776 78899999 68999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039811 241 SLVLCTAIYFSVGLFGYLL 259 (360)
Q Consensus 241 a~~~~~~~y~~~g~~gy~~ 259 (360)
++..+.++|+.........
T Consensus 260 ~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 260 VIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 9999888888866554433
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=99.06 E-value=6.2e-07 Score=87.86 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=134.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAAT-VKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (360)
.+|+.+.++..+..+++++|+|++..|.. .+.+|- ..++..++.+++.+.....+.|.+. .++..++.+.+++.+|+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 45778999999999999999999976654 456686 3556667778887888888888644 55677899999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVL---LAV 171 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~---~~~ 171 (360)
...+++.-..++.....+.......+..++.. .+ +. ....+..+ ..++..-+.+...|....+... .-+
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~----~p-~~--~~~~~~~~-~~~~~~~lN~~gv~~~~~~e~~~~~~ki 158 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFW----FP-EM--AQWIPALI-AVALVALANLAAVRLYGEIEFWFAMIKV 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cC-CC--chHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 98888887777665555555555454443322 22 11 11112111 1111111222222322222111 111
Q ss_pred HHHHHHHHHHHHHH-hc-CCCCCCCCCcccCc-----cccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 172 MFVAICSVMAIYAV-GE-GKSKSPKLLPQLDN-----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 172 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
..++..++..+... .. ++.+......+..+ .+++.++..++....|+|.+-.. -+|.|||+ +.+|++.
T Consensus 159 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 159 TTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 11111111111111 11 11111000111111 12345667888899999987776 78899998 7899998
Q ss_pred HHHHHHHHHHHHHHHH
Q 039811 240 ISLVLCTAIYFSVGLF 255 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~ 255 (360)
.+...+.++|......
T Consensus 239 ~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 239 KVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888875443
No 29
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.06 E-value=2.1e-07 Score=92.16 Aligned_cols=236 Identities=15% Similarity=0.149 Sum_probs=129.2
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHH-HHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAAT-VKVLGVI-PAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~-~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (360)
.+|+.+.++.....+++++|+|++..|.. .+++|-. ..++..++.+++.........|.+.. ++.....+..++.+|
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence 36778999999999999999999988876 4456643 22344456667777777778887554 455567777888999
Q ss_pred hhHHHHHHHHHHHH-hhhhHHHHHHHhhhchh-hhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHH
Q 039811 94 RAGSVAAQLCVMIT-NLGCLIIFFIIIGSVHL-GVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVL 168 (360)
Q Consensus 94 ~~g~~~~~i~~~~~-~~g~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~ 168 (360)
|...++..-..... ..+.+..+....++.+. ...++...++| ... .+ ...++..+...+ .|..+.+..+
T Consensus 120 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~--~~~-~i---~~~~i~~~~~ln~~Gvk~~~~~~~i 193 (501)
T TIGR00911 120 PLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW--AIR-LV---AVLCVLLLTLVNCLSVKWATRVQDI 193 (501)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH--HHH-HH---HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 98877665433221 12223333333344321 11111100111 111 11 111222222222 4444443332
Q ss_pred HHHHHH---HHHHHHHHHHHhcCCCCCCCCCcccCc-cccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 169 LAVMFV---AICSVMAIYAVGEGKSKSPKLLPQLDN-HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 169 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
....-+ ++.++..+....+++.+..+......+ ..++.++..++....|+|.+-.. .+|+|||+ +.+|++.
T Consensus 194 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~ 273 (501)
T TIGR00911 194 FTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAII 273 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHH
Confidence 221111 111111122222222111111001111 12344566677888999988776 88999998 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039811 240 ISLVLCTAIYFSVGLFGYL 258 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~gy~ 258 (360)
.+..++.++|.+.......
T Consensus 274 ~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 274 ISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998655443
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.05 E-value=1.5e-07 Score=91.35 Aligned_cols=236 Identities=15% Similarity=0.083 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHhh-hcCCCCHHHHHHHHcChhHHHH
Q 039811 22 WVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLT-DVSVEILMRYTH-AGETSTYAGVMRESFGRAGSVA 99 (360)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~-~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~g~~~ 99 (360)
|.++++...+++++|+|+...| ...+.|.. .++..++.+.+. ........|.++ .++.....+..++.+||+..++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 6788999999999999999999 77677765 555555555554 466666677655 5678888899999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH----H
Q 039811 100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFV----A 175 (360)
Q Consensus 100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~----~ 175 (360)
...............+.....+.+...+......+. .....+.++..++...+.+...|....+..+....-+ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~ 157 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSP--WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLL 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSH--HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccccccccc--chheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhh
Confidence 998888888877777777777766555432111110 1122222222222333333323333333332222122 1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCCchHHHHHHHHHHHHHHHHH
Q 039811 176 ICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPSDMITAVRISLVLCTAIYFS 251 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~~~~~~~~~a~~~~~~~y~~ 251 (360)
+.++..+....++..+..+...+...++.+...+.+++...++|.+-.. .+|+|| ++.+|++..+..++.++|.+
T Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~y~l 236 (426)
T PF13520_consen 158 VLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAIIYIL 236 (426)
T ss_dssp HHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHHHhh
Confidence 1111111111111111000000001112333467788889999998877 667777 68999999999999999999
Q ss_pred HHHHHHhhcCC
Q 039811 252 VGLFGYLLFGE 262 (360)
Q Consensus 252 ~g~~gy~~fG~ 262 (360)
.........++
T Consensus 237 ~~~~~~~~~~~ 247 (426)
T PF13520_consen 237 FSIALLGALPD 247 (426)
T ss_dssp HHHHHHTTSTH
T ss_pred hhheeeecccc
Confidence 87776666554
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.05 E-value=4.7e-07 Score=88.97 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=134.5
Q ss_pred CCCCCCchHHHHHHHHHHHHhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcC
Q 039811 16 KTEKRPWVSGAVFNVATSIIGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFG 93 (360)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (360)
+.+|+.+.++.....+++++|+|++..|. +++++|. ..+...++.+++.......+.|.... ....++.+.+++.+|
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 35788999999999999999999998765 7778887 35666667777777777777776443 445567789999999
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVL---LA 170 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~---~~ 170 (360)
|...+++.-...+.......+.....+..+... .+ +. ..+.+..+ ...+..-+.+...|....+..+ .-
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~----~p-~~--~~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~~~~k 167 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFW----FP-DL--SDWVASLA-VVLLLLSLNLATVKMFGEMEFWFAMIK 167 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-CC--cHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998888877665444444444444433222 22 11 12222211 1111111222223333332221 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-----CCcccCc----cccccccccchhhhhhhhccccc----cccccCCC-chHH
Q 039811 171 VMFVAICSVMAIYAVGEGKSKSPK-----LLPQLDN----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMIT 236 (360)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~ 236 (360)
+..++..++..+.....+ .+.++ ..+...+ ++++.++..++....|+|.+-.. -+|+|||+ +.+|
T Consensus 168 l~~l~~~ii~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr 246 (469)
T PRK11049 168 IVAIVALIVVGLVMVAMH-FQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR 246 (469)
T ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH
Confidence 111111111111111111 11000 1010000 12334577888889999998777 78899998 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039811 237 AVRISLVLCTAIYFSVGLFGY 257 (360)
Q Consensus 237 ~~~~a~~~~~~~y~~~g~~gy 257 (360)
++..+.....+.|.+......
T Consensus 247 ai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 247 AINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHe
Confidence 998777777888886665544
No 32
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.04 E-value=4.2e-07 Score=88.70 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=125.1
Q ss_pred CCCCCCchHHHHHHHHHHHHhHhHhHHHHHHH-HhC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHc
Q 039811 16 KTEKRPWVSGAVFNVATSIIGAGIMSIAATVK-VLG-VIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESF 92 (360)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G-~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~ 92 (360)
+-+|+.+.++.+...++.++|+|++..|.... +.| ....++..++.+++.........|.... ++........++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 34678899999999999999999999998743 455 3334555667777777777778886543 33334444566889
Q ss_pred ChhHHHHHHHHHHH-HhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-
Q 039811 93 GRAGSVAAQLCVMI-TNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLA- 170 (360)
Q Consensus 93 G~~g~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~- 170 (360)
||...++..-.... ........+....++.+.. ..+.+.. .......+ ...+..-+.....+..+.+..++.
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~----~~~~~~~-~~~~~~~~-~~~~~~~ln~~gv~~~~~v~~~~~~ 158 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF----LTPIDPL-LGKFIAAG-LIIAFMLLHLRSVEGGAAFQTLITI 158 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCchH-HHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99877766654332 2222233333444443322 1211111 11111111 111111111111333333322211
Q ss_pred --HHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHH
Q 039811 171 --VMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLV 243 (360)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~ 243 (360)
+.-+++.++..+.....++.+.+...+ ......+.++..++....|+|.+-.. -+|+|||+ +.+|++..+..
T Consensus 159 ~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~ 237 (445)
T PRK11357 159 AKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCL 237 (445)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHH
Confidence 111111111111111111111111111 00111134556677778898887666 88999998 78999999999
Q ss_pred HHHHHHHHHHHHHH
Q 039811 244 LCTAIYFSVGLFGY 257 (360)
Q Consensus 244 ~~~~~y~~~g~~gy 257 (360)
++.++|.+......
T Consensus 238 i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 238 LVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766543
No 33
>PRK10249 phenylalanine transporter; Provisional
Probab=99.04 E-value=7.6e-07 Score=87.21 Aligned_cols=232 Identities=10% Similarity=0.007 Sum_probs=136.5
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVK-VLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (360)
-+|+.+.++..+..++.++|+|++..|-... ++|- ..++..++.+++.......+.|... .++.....+.+++.+|+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 3577899999999999999999998776554 5576 3677778888888888888888755 45677888899999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLL---AV 171 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~---~~ 171 (360)
...+++.-..++.......+.....+..++.. .+ +. ....+. +....+..-+.+...|..+.+.... -+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~----~~-~~--~~~~~~-~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv 169 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYW----FP-DV--PTWIWA-AAFFIIINAVNLVNVRLYGETEFWFALIKV 169 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-cC--cHHHHH-HHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 99988888776655444444444344333322 21 11 111111 1111112222222233333222111 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCC---C-CCCccc-Cccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHH
Q 039811 172 MFVAICSVMAIYAVGEGKSKS---P-KLLPQL-DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRIS 241 (360)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a 241 (360)
..++..++..+.....+..+. . +.+++. ...+++.++..++....|+|.+-.. -+|+|||+ +.+|++..+
T Consensus 170 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~ 249 (458)
T PRK10249 170 LAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQV 249 (458)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHH
Confidence 111111111112112211100 0 111100 0113344567788888999988776 88899998 689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 039811 242 LVLCTAIYFSVGLFGY 257 (360)
Q Consensus 242 ~~~~~~~y~~~g~~gy 257 (360)
.....++|........
T Consensus 250 ~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 250 VYRILLFYIGSLVVLL 265 (458)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999987544433
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.02 E-value=8.4e-07 Score=87.63 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=129.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHc
Q 039811 15 SKTEKRPWVSGAVFNVATSIIGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESF 92 (360)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (360)
++.+|+.+.++.....+++++|+|++..|- +.+++|-...++..++.+++.......+.|.+. .++.....+.+++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 445678999999999999999999999996 666778654677788888888888888998754 567777888888999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---H
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVL---L 169 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~---~ 169 (360)
|+...+++.-..+.. +..+.+......+. .+..+.+.. ....+. .+..++..-+.+...|.......+ .
T Consensus 91 g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~---~~~~~~~~~---~~~~~~-~~~~~~~~~lN~~gv~~~~~~~~~~~~~ 162 (489)
T PRK10836 91 EEGFGFALGWNYWYN-WAVTIAVDLVAAQL---VMSWWFPDT---PGWIWS-ALFLGVIFLLNYISVRGFGEAEYWFSLI 162 (489)
T ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HhhhcCCCC---chHHHH-HHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 988777766554443 22222222222221 112221110 111111 111111111222112222221111 0
Q ss_pred HHHHHHHHHHHHHHHH---hcCCCC-CCCCCcc--cCccccccccccchhhhhhhhccccc----cccccCCC-chHHHH
Q 039811 170 AVMFVAICSVMAIYAV---GEGKSK-SPKLLPQ--LDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAV 238 (360)
Q Consensus 170 ~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~ 238 (360)
-+..++..++..+... .+++.+ ..+.+.+ .....++..++.+.....|+|.+-.. -+|.|||+ +.+|++
T Consensus 163 ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 242 (489)
T PRK10836 163 KVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAV 242 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHH
Confidence 1111111010111111 111100 0011110 00011222333344455688887776 88999998 789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039811 239 RISLVLCTAIYFSVGLFGYLL 259 (360)
Q Consensus 239 ~~a~~~~~~~y~~~g~~gy~~ 259 (360)
..++..+.++|.+........
T Consensus 243 ~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 243 RQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999999876554433
No 35
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.02 E-value=8.2e-07 Score=86.59 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=137.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 15 SKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
++-+|+.|.++.....++.++|......+.+++++|+..-++..++.+++.......+.|.+. .++.......+++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 344678899999999999999855556688889999864455556666666666777888654 4566777888999999
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMF 173 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~ 173 (360)
|...++.....+.........+....++.+...++.. ..+....+ ...+..-+.+...|..+.+..+....-
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~-~~~~~~~ln~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALV-FYIVFIGINILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999888888777776667777777777665543321 11111111 111111122212444444433322221
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcc-cCc-----cccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHH
Q 039811 174 VAICSVMAIYAVGEGKSKSPKLLPQ-LDN-----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISL 242 (360)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~ 242 (360)
++...+ ....... +.+..+..+. ..+ ...+.+++.++....++|.+... -+|+|||+ +.+|++..+.
T Consensus 155 ~~~l~i-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~ 232 (442)
T TIGR00908 155 IIALGV-FIGAMVP-HFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAI 232 (442)
T ss_pred HHHHHH-HHHHHhc-cCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHH
Confidence 111111 1111111 1111111110 000 11223456677777889988777 77899998 7899999999
Q ss_pred HHHHHHHHHHHH
Q 039811 243 VLCTAIYFSVGL 254 (360)
Q Consensus 243 ~~~~~~y~~~g~ 254 (360)
.++.++|...-.
T Consensus 233 ~~~~~~~~~~~~ 244 (442)
T TIGR00908 233 LTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHH
Confidence 988888876644
No 36
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.02 E-value=9.9e-09 Score=85.89 Aligned_cols=149 Identities=12% Similarity=0.218 Sum_probs=112.8
Q ss_pred CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh---------h---cC-------
Q 039811 20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH---------A---GE------- 80 (360)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~---------~---~~------- 80 (360)
..|...+...+.|-++|+|.|+||.+|+.+||.+++.++++.+++++.+....+++.. + .+
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 3455667788999999999999999999999999999999999999999999887632 0 00
Q ss_pred --------------------------------------CCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhc
Q 039811 81 --------------------------------------TSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSV 122 (360)
Q Consensus 81 --------------------------------------~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~ 122 (360)
....+|++...|.|+|..+..+++++++||....|...+-..
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 114667999999999999999999999999999999888766
Q ss_pred hhhhhHhhhc--------------cc--c------ccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHH
Q 039811 123 HLGVLQEWCG--------------FH--W------WNTRVIALLFVMVFVMLPLALFG---LVGYSAISVL 168 (360)
Q Consensus 123 l~~~~~~~~~--------------~~--~------~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~ 168 (360)
..++.....+ ++ | ....++.+.++.+++-+|+.+.. -|++..+..+
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltsl 241 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSL 241 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHH
Confidence 6655433221 00 1 11234555566666777888766 6666666553
No 37
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.00 E-value=8.4e-07 Score=86.86 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=135.4
Q ss_pred CCCCCCchHHHHHHHHHHHHhHhHhHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 16 KTEKRPWVSGAVFNVATSIIGAGIMSIAATVK-VLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
+.+|+.+.++..+..+++++|+|++..|-... ++|- ..++..++.+++.......+.|.+. .+...++.+.+++.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 35688899999999999999999988877665 5565 4566667777777777778888644 5567788888999999
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhh--h-hhhHHHHHHHHH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALF--G-LVGYSAISVLLA 170 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~--~-l~~~s~~s~~~~ 170 (360)
|...+++.-..++.....+.......++.++...+ . . .+..+..+ ...+..-+.+. | ...++.+...+-
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~-~--~~~~~~~i-~~~~~~~lN~~gv~~~~~~~~~~~~ik 159 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----E-I--PTWVSAAV-FFVVINAINLTNVKVFGEMEFWFAIIK 159 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c-C--cHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999998888877777776666666665543322 1 1 22222211 11111122221 2 333333222111
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCC---CCCCcccC-ccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHH
Q 039811 171 VMFVAICSVMAIYAVGEGK-SKS---PKLLPQLD-NHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRI 240 (360)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~ 240 (360)
+..+++.++..+.....+. .+. .+..++.. .++.+.++..++....|+|.+-.. .+|+|||+ +.+|++..
T Consensus 160 i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~ 239 (456)
T PRK10238 160 VIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ 239 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH
Confidence 1111111111111112211 110 01111000 012233455667778898888776 88999998 68999988
Q ss_pred HHHHHHHHHHHH
Q 039811 241 SLVLCTAIYFSV 252 (360)
Q Consensus 241 a~~~~~~~y~~~ 252 (360)
+.....+.|...
T Consensus 240 ~~~~i~~~y~~~ 251 (456)
T PRK10238 240 VIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHH
Confidence 887777777654
No 38
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.99 E-value=1.2e-07 Score=92.64 Aligned_cols=232 Identities=11% Similarity=0.092 Sum_probs=141.5
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIA-ATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (360)
.+|+.+.++..+..+++++|+|++.+| .+.+++|-. +++..++.+++.......+.|.+. .++.....+.+++.+||
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~ 88 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGR 88 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 578889999999999999999999999 677788864 677778888888888888888754 45667888999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVL---LAV 171 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~---~~~ 171 (360)
...++.....+......+.......++.++...++ . ....+..+ ..++..-+.+...|..+.+... .-+
T Consensus 89 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~--~~~~~~~~-~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 89 WAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-----I--PLWLFSLI-LTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----C--cHHHHHHH-HHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 99998888777766666666555555544433221 1 12211111 1111111111113333222221 111
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCCCCcccCc-----cccccccccchhhhhhhhccccc----cccccCCC-chHHHHHH
Q 039811 172 MFVAICSVMAIYAVGEGK-SKSPKLLPQLDN-----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRI 240 (360)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~ 240 (360)
..++..++..+.....+. .++.....+..+ ++++.++..++....++|.+... -+|+|||+ +.+|++..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 111111111111111111 111110111111 12333577788888999998777 88999998 78999988
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039811 241 SLVLCTAIYFSVGLFGY 257 (360)
Q Consensus 241 a~~~~~~~y~~~g~~gy 257 (360)
+.....++|+.......
T Consensus 241 ~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHHHHe
Confidence 88888888887655433
No 39
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.98 E-value=1.4e-08 Score=96.96 Aligned_cols=305 Identities=14% Similarity=0.158 Sum_probs=177.3
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHh-C-HHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVL-G-VIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~-G-~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
.+|+.+.+.++..++++++|+|++..|.+..+- | ...+++.-+++++++......-.|... .+++.-+..-..++||
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg 89 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFG 89 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhc
Confidence 468899999999999999999999999998854 3 446677778889999998888888755 2344444455567788
Q ss_pred hhHHHHHHHHHHHHhhhhH-HHHHHHhhhc-hhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHH
Q 039811 94 RAGSVAAQLCVMITNLGCL-IIFFIIIGSV-HLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVL 168 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~ 168 (360)
+.......-.-.+...... ..+-+..++. +++..+. .+.+.. .+++ +..+++..+.+.+ .|+...+-.+
T Consensus 90 ~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~p~~-~~~l----la~~~l~~lt~~n~~~V~~a~~vq~~ 163 (479)
T KOG1287|consen 90 PFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDVPRV-ASKL----LAAALLVLLTLINSFSVKWATRVQIV 163 (479)
T ss_pred cchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCCchH-HHHH----HHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 7665544433333333333 4555555554 4444441 122211 2222 2233444555544 4554444433
Q ss_pred HHHHHHHHHH---HHHHHHHhcCCCCCCCCCcccCc-cccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 169 LAVMFVAICS---VMAIYAVGEGKSKSPKLLPQLDN-HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
++..=+++.. +..++....++.+..++.+ ..+ ..+..++..++-...|+|.+=.+ .+|+|||+ .++++..
T Consensus 164 ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~ 242 (479)
T KOG1287|consen 164 FTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAIL 242 (479)
T ss_pred HHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHH
Confidence 2221111111 1112333333333222111 111 12223455667777778876555 88999999 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--Cchhh-----H-----------------hhCCCCCCchH----------------
Q 039811 240 ISLVLCTAIYFSVGLFGYLLFGE--SIMSD-----I-----------------LVNFDQSSGSA---------------- 279 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~gy~~fG~--~~~~~-----i-----------------l~n~~~~~~~~---------------- 279 (360)
+++.+++++|+++=+..+.+.-. ..+++ . ++++..-+...
T Consensus 243 isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~L 322 (479)
T KOG1287|consen 243 ISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHL 322 (479)
T ss_pred HhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCc
Confidence 99999999999987665543221 11110 0 01111100000
Q ss_pred -----------------HHHH---HHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchh
Q 039811 280 -----------------IIFS---YTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTG 328 (360)
Q Consensus 280 -----------------i~~~---~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~ 328 (360)
+.+. .++..+.+|+..+++..+=.-.....+.+=+++++|.+++...|.
T Consensus 323 P~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 323 PAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred cHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 3333 334457778999998888777777788888999999776655444
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.94 E-value=2.7e-06 Score=83.81 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=134.7
Q ss_pred CCCchHHHHHHHHHHHHhHhHhHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-CCCCHHHHHHHHcChh
Q 039811 19 KRPWVSGAVFNVATSIIGAGIMSIA-ATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-G-ETSTYAGVMRESFGRA 95 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~lP-~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~-~~~~y~~l~~~~~G~~ 95 (360)
|+.+.++.....++.++|+|++..| .+.+++|-...++..++.+++.......+.|.+.. + ....|.+.+++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 6789999999999999999999765 55667775434566777778888888888887654 3 3447989999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---HH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLA---VM 172 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~---~~ 172 (360)
..+++.-..++.....+.......++.+... .+ +. ....+..+ ..++..-+.....|..+.+..+.. +.
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~~~-~~~~~~~in~~gv~~~~~~~~~~~~~ki~ 153 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYW----TD-KV--NPAVWIAI-FYVFIVIINLFGVKGYGEAEFWFSSIKIL 153 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-CC--CHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9988887777766666666665555544322 11 11 11112211 111111111111333333322111 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCC----CCC---cccCcc---ccccccccchhhhhhhhccccc----cccccCCC-chHHH
Q 039811 173 FVAICSVMAIYAVGEGKSKSP----KLL---PQLDNH---VSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITA 237 (360)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~---~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~ 237 (360)
.++..++..+.....+..+.. ... +...+. ..+.++..++....|+|.+-.. -+|.|||+ +.+|+
T Consensus 154 ~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPra 233 (478)
T TIGR00913 154 AIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRA 233 (478)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHH
Confidence 111111111122211111110 000 001111 1234566677778899988776 78999998 78999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039811 238 VRISLVLCTAIYFSVGLF 255 (360)
Q Consensus 238 ~~~a~~~~~~~y~~~g~~ 255 (360)
+..+..++.++|++....
T Consensus 234 i~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 234 AKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999986543
No 41
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.88 E-value=1.4e-06 Score=87.29 Aligned_cols=240 Identities=12% Similarity=0.067 Sum_probs=135.8
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATV--KVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f--~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
-+|+.+.++.....++.++|+|++.+|-.. ..+|-. .++..++.++.+........|.+. .++..+.....++.+|
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 367889999999999999999999999654 346754 455566777777777777788654 3445555666678899
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhc----------cccccc-hHHHHHHHHHHHHhhhhhhhhhhH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCG----------FHWWNT-RVIALLFVMVFVMLPLALFGLVGY 162 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~pl~~~~l~~~ 162 (360)
+...+++.-..++.....+.+.....++.+..++....+ .+.... ......++. ++..-+.....|..
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii-~l~~~ln~~Gik~s 183 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLI-LLLAVLLSFGVKES 183 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHH-HHHHHHHHhchhHH
Confidence 988888877766655555544444445544444332111 010000 111111111 11111111113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CC--cccCccccccccccchhhhhhhhccccc----cccccCCC-c
Q 039811 163 SAISVLLAVMFVAICSVMAIYAVGEGKSKSPK--LL--PQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-D 233 (360)
Q Consensus 163 s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~ 233 (360)
+.+..++..+-+++.++..+....+.+.+... +. +....+.++.+++.+.....|+|.+-.. -+|.|||+ +
T Consensus 184 ~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~ 263 (557)
T TIGR00906 184 AWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRA 263 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcccc
Confidence 33333222111111111111112222111100 00 0000012334567778888899988776 78999999 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 039811 234 MITAVRISLVLCTAIYFSVGLFGYL 258 (360)
Q Consensus 234 ~~~~~~~a~~~~~~~y~~~g~~gy~ 258 (360)
.++++..+..++.++|.++...-..
T Consensus 264 iP~aii~sl~i~~vlY~lv~~~l~~ 288 (557)
T TIGR00906 264 IPIGIVTSLLVCFVAYFLMSAALTL 288 (557)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988765443
No 42
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.87 E-value=4.2e-06 Score=82.01 Aligned_cols=230 Identities=14% Similarity=0.109 Sum_probs=130.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAAT-VKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (360)
.+|+.+.++.....+++++|+|++.+|.. .+.+|- ..++..++.+++.......+.|... .++.....+.+++.+||
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~ 85 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 45678999999999999999999999876 446676 3677778888888888888888755 45567777889999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVL---LAV 171 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~---~~~ 171 (360)
...+++....++.....+.......+..+... .+.. ....+..+ ..++..-+.+...|....+..+ .-+
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~-~~~l~~~ln~~gv~~~~~~~~~~~~~~~ 157 (457)
T PRK10580 86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVW----FPTV---PHWIWVLS-VVLIICAVNLMSVKVFGELEFWFSFFKV 157 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCC---ChHHHHHH-HHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 99888887766655444444333333333222 2111 11112211 1111111222112222222211 111
Q ss_pred HHHHHHHHHHHHH-Hhc-CCCCCC----CCCccc-Cccccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 172 MFVAICSVMAIYA-VGE-GKSKSP----KLLPQL-DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 172 ~~~~~~~~~~~~~-~~~-~~~~~~----~~~~~~-~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
..++..++..+.. ... .+...+ +.+++. ....++.++..++....|+|.+... -+|+|||+ +.+|++.
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 1111111001101 111 000011 111100 0012233566677788899988777 88899999 5899988
Q ss_pred HHHHHHHHHHHHHHHH
Q 039811 240 ISLVLCTAIYFSVGLF 255 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~ 255 (360)
.+...+.++|......
T Consensus 238 ~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 238 SVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877778888766443
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.69 E-value=3.1e-05 Score=75.59 Aligned_cols=215 Identities=12% Similarity=0.117 Sum_probs=125.7
Q ss_pred HHHHHhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChhHHHHHHHHHHHHh
Q 039811 31 ATSIIGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRAGSVAAQLCVMITN 108 (360)
Q Consensus 31 ~~~~iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~ 108 (360)
+++++|+|++..|- +.+++|- ..++..++.+++.........|.+. .++.....+.+++.+||...+++.-..+...
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 56899999998887 7778896 4778888888888888888888754 4567789999999999999988887777655
Q ss_pred hhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHH
Q 039811 109 LGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLA---VMFVAICSVMAIYAV 185 (360)
Q Consensus 109 ~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~---~~~~~~~~~~~~~~~ 185 (360)
...+.......+..+.. +.+ +. ....+. +...++..-+.+...|..+.+..+.+ +..++..++..+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~----~~~-~~--~~~~~~-~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~-~ 153 (446)
T PRK10197 83 VLVIPLEANIAAMILHS----WVP-GI--PIWLFS-LVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAV-A 153 (446)
T ss_pred HHHHHHHHHHHHHHHHh----ccc-cC--cHHHHH-HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 55444433333332222 211 11 111111 11111111122222333322222211 1111111111111 1
Q ss_pred hcCCCC--CC-C---CCcc-cCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHHHHHHHH
Q 039811 186 GEGKSK--SP-K---LLPQ-LDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTAIYFSVG 253 (360)
Q Consensus 186 ~~~~~~--~~-~---~~~~-~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~~y~~~g 253 (360)
..+..+ +. + ..+. ...++.+.++..++....|+|.+-.. .+|+|||+ +.+|++..+...+.++|+...
T Consensus 154 ~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~ 233 (446)
T PRK10197 154 ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSI 233 (446)
T ss_pred hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 122111 00 0 0110 00113344677888889999998887 88999998 689999999999999999865
Q ss_pred HH
Q 039811 254 LF 255 (360)
Q Consensus 254 ~~ 255 (360)
..
T Consensus 234 ~~ 235 (446)
T PRK10197 234 FV 235 (446)
T ss_pred HH
Confidence 55
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.67 E-value=4.8e-05 Score=74.50 Aligned_cols=241 Identities=14% Similarity=0.115 Sum_probs=141.0
Q ss_pred CCCCCCCchHH-HHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHc
Q 039811 15 SKTEKRPWVSG-AVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESF 92 (360)
Q Consensus 15 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (360)
++++++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........|.+. .++...+.+..++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 33466777777 8888888999999999999998776 22222234455555555566666654 445667889999999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHH---H
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAI---S 166 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~---s 166 (360)
||...+.......+..............+.+....+... ...... +....+..+++.-+.+.+ .|....+ .
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGP-LLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCc-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 987777777777777777777777777664444433210 000010 111222222233333322 2222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccC-ccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHH
Q 039811 167 VLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLD-NHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRI 240 (360)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~ 240 (360)
.+..+..+++.. +......+....+..+... ....+..+..++....++|.+-.. -+|+|||+ +.+|++..
T Consensus 164 ~~~~i~~~i~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~ 240 (466)
T COG0531 164 TILKIIILLIFI---ILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHH---HHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHH
Confidence 212222222222 2212211111111111111 112233566777778888888766 68999997 77999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 039811 241 SLVLCTAIYFSVGLFGYLLFGE 262 (360)
Q Consensus 241 a~~~~~~~y~~~g~~gy~~fG~ 262 (360)
+...+.++|+..........++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999988877777664
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.62 E-value=6.7e-05 Score=71.15 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=139.8
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVL-IVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~-lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
-+|+.+.++--+.-+...||+|.+ .-..+.+.+| +++++ -.+++++.+.-++.+.|-.. ++...++.+.+++.+|
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 357778888888899999999976 7778888889 55554 45567777777888888644 4678899999999999
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhh--hhhhh----h-hhHHHHH
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLP--LALFG----L-VGYSAIS 166 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--l~~~~----l-~~~s~~s 166 (360)
++..++..=..++.-...+.+-+..++..++..+++. +.| ... +...++..- +.-.| + -+.+.+=
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P~W-----v~a-l~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--PQW-----VFA-LAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888888888888666655443 222 111 111112222 22333 2 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCc-----cccccccccchhhhhhhhccccc----cccccCCC-chHH
Q 039811 167 VLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDN-----HVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMIT 236 (360)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~ 236 (360)
+...+.++++... .+...+.++.+ ....++..+ ++++.+++.++-+.+|||.+... -.|-|||+ ..+|
T Consensus 161 V~aIi~~Iv~G~~-ll~~g~~~~~~-~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk 238 (462)
T COG1113 161 VAAIIAFIVVGIV-LLFGGFGGGGG-AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK 238 (462)
T ss_pred HHHHHHHHHHHHH-HHhhccCCCCC-CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH
Confidence 3211112222221 12222222211 111122111 25566788999999999999887 88889998 5667
Q ss_pred HHHHHHHHHHHHHH
Q 039811 237 AVRISLVLCTAIYF 250 (360)
Q Consensus 237 ~~~~a~~~~~~~y~ 250 (360)
+...-..=..++|.
T Consensus 239 Ain~V~~RI~iFYv 252 (462)
T COG1113 239 AINSVIWRILIFYV 252 (462)
T ss_pred HHhhhhHHHHHHHH
Confidence 76655555555554
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.59 E-value=0.00015 Score=71.51 Aligned_cols=243 Identities=12% Similarity=-0.006 Sum_probs=117.3
Q ss_pred CCCCCchHHHHHHHHHHHHh--HhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNVATSIIG--AGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG--~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (360)
-+|+.+.++.+..-+. .+| .|+. ..+.+..++|-...+...++.+++.......+.|.+. .++.....+-+++++
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 4567788887666665 444 5554 4556777788654566677788888888888888754 456667777788888
Q ss_pred Ch----hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccc-cccchHHHHHHHHHHHHhhhhhhh---hhhHHH
Q 039811 93 GR----AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFH-WWNTRVIALLFVMVFVMLPLALFG---LVGYSA 164 (360)
Q Consensus 93 G~----~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~ 164 (360)
|+ ...+++.-...+.....+.+.....++.+........+.+ +...+.... .+...+..-+...+ .|..+.
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~in~~g~k~~~~ 167 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIF-GIMIGIHLIHALINSLPTKWLPR 167 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhh-hhHHHHHHHHHHHHHhhHhHHHH
Confidence 74 3344443334444444444444444444443322111110 111121111 11111222222222 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCC-CcccCccc-----cccccccchhhhhhhhccccc----cccccCCC
Q 039811 165 ISVLLAVMFVAICSVMAIYAVGEG--KSKSPKL-LPQLDNHV-----SLFDLFPAVPVIVTAFTFYFN----GFELDKPS 232 (360)
Q Consensus 165 ~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~-----~~~~~~~~~~i~~faf~~~~~----~~~m~~~~ 232 (360)
+..+..+.-++..++..+.....+ +.+..+. ..+..+.. +......++....|+|.+-.. -+|+|||+
T Consensus 168 ~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~ 247 (482)
T TIGR00907 168 ITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPE 247 (482)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChh
Confidence 332211111111110111111111 1111110 00111111 112334445556688887776 88999998
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039811 233 -DMITAVRISLVLCTAIYFSVGLFGYLLFG 261 (360)
Q Consensus 233 -~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 261 (360)
+.+|++..+..+..+++.+..+.-....+
T Consensus 248 r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 248 VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999888776654443333333333
No 47
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.39 E-value=0.0016 Score=63.58 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=132.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHhHhHhHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHc
Q 039811 15 SKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKV--LGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~--~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (360)
++++|+.++++-+..-....+...-+........ .++..+++..++-..+...-..+......|. ..++..+.|..|
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-Gl~~~v~sR~~F 86 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-GLPFPVLSRASF 86 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-CCCcchhhhhhh
Confidence 4445555766666665555555555555544443 3455555555555444444444444444443 567788999999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccc-----hHHHHHHHHHHHHhhhhhhh----hhhHH
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNT-----RVIALLFVMVFVMLPLALFG----LVGYS 163 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~----l~~~s 163 (360)
|++|..+..+...+...|=........++.+..+++..++...... ......++..++..++.... .+...
T Consensus 87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~ 166 (442)
T TIGR00800 87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFE 166 (442)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999888888898888877776554211001 22222233333444433322 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCc-ccCccccccccccchhhhhhhhccc----cc-cccccCCCchHH
Q 039811 164 AISVLLAVMFVAICSVMAIYAVGE-GKSKSPKLLP-QLDNHVSLFDLFPAVPVIVTAFTFY----FN-GFELDKPSDMIT 236 (360)
Q Consensus 164 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~----~~-~~~m~~~~~~~~ 236 (360)
..+..... .++. ..++...+ ++..+....+ ..+.......+..+++...-.+... ++ .+.+|+|++-.+
T Consensus 167 ~~a~~~~~-~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~ 242 (442)
T TIGR00800 167 WLAVVPPF-AAFG---MLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIW 242 (442)
T ss_pred HHHHHHHH-HHHH---HHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHH
Confidence 55543111 1111 11222222 1111111111 1111222334444444432222211 12 566777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cCCC
Q 039811 237 AVRISLVLCTAIYFSVGLFGYLL----FGES 263 (360)
Q Consensus 237 ~~~~a~~~~~~~y~~~g~~gy~~----fG~~ 263 (360)
....++....+....+|+.+-.. +|+.
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 243 GQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 67778888888888888887765 7754
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.37 E-value=0.0021 Score=63.41 Aligned_cols=241 Identities=8% Similarity=-0.074 Sum_probs=123.5
Q ss_pred CCCCCCchHHHHHHHHHHH-HhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHc
Q 039811 16 KTEKRPWVSGAVFNVATSI-IGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESF 92 (360)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (360)
+-+|+.|.++.+..-++.+ +++|+.+.+. +..++|- ..+...++.++........+.|.+. .++.....+-+++.+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 3457789998888777764 8889886654 4556676 3556666677777777777888644 456667777889999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhh--h--ccccc--cch-HHHHHHHHHHHHhhhhhhh---hhhH
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEW--C--GFHWW--NTR-VIALLFVMVFVMLPLALFG---LVGY 162 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~--~--~~~~~--~~~-~~~~~~~~~~~~~pl~~~~---l~~~ 162 (360)
||...+++.-...+................+..+.+.. . +.++. ... +..... ..+.....+.+ .|..
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~in~~g~k~~ 166 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLG--SVLLVLTTVINCIGVEWM 166 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHH--HHHHHHHHHHHHhhhhHH
Confidence 99888877766665544433333333333332221110 0 11110 011 111111 11122222222 3333
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccC-cccc-ccccccchhhhhhhhccccc----cccccCCC-
Q 039811 163 SAI---SVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLD-NHVS-LFDLFPAVPVIVTAFTFYFN----GFELDKPS- 232 (360)
Q Consensus 163 s~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~faf~~~~~----~~~m~~~~- 232 (360)
+.+ ..+..+..+++.++ ......+.+.+. ....... +..+ ...+..+.....|+|.+-.. -+|+|||+
T Consensus 167 ~~i~~~~~~~~i~~l~~iii-~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r 244 (475)
T TIGR03428 167 SRVNTIGVTCEIVGVLAVIG-VLFTHAQRGPGV-VFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcce-eeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence 333 22222111111111 111111111000 0000000 0111 12233344456778887766 88999998
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039811 233 DMITAVRISLVLCTAIYFSVGLFGYLLFG 261 (360)
Q Consensus 233 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 261 (360)
+.+|++..+..+..++|.+.-+......+
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78999999999887766665554444333
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.30 E-value=0.0019 Score=63.64 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHHhh-hcCCCCHHHHHHHHcChhHH
Q 039811 20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTD-VSVEILMRYTH-AGETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~-~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~g~ 97 (360)
|.+.+.-++..+.+..+ +-.+|.+ ++.|.. .++..++.+++.. -......|.+. .++.....+.+++++|++..
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 45555555554444444 5555755 577853 3333344443332 34555566544 34556777889999999888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHH---
Q 039811 98 VAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAV--- 171 (360)
Q Consensus 98 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~--- 171 (360)
++.....+.........-+...+..+..........+...........+.+++..-+...+ .|..+.+..+...
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ 157 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGT 157 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 8776655554422111111111111100000000000010111111112222222223333 4444433322111
Q ss_pred HHH-HHHHHHHHHHHhcCCCCCCC-CCcc-cCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHH
Q 039811 172 MFV-AICSVMAIYAVGEGKSKSPK-LLPQ-LDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLV 243 (360)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~ 243 (360)
... ++.++..+.....+..+..+ ...+ .++..++.+...+ ....++|.+-.. -+|+|||+ +.+|++..+..
T Consensus 158 ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~ 236 (474)
T TIGR03813 158 IIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAAL 236 (474)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHH
Confidence 111 11111112222222211110 0011 1111122222222 234678887766 78999998 79999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 039811 244 LCTAIYFSVGLFGYLLFG 261 (360)
Q Consensus 244 ~~~~~y~~~g~~gy~~fG 261 (360)
++.++|.+....-....+
T Consensus 237 ~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 237 GTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999886655444433
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.30 E-value=0.0043 Score=61.52 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=59.3
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-cC-CCCHHHHHHHHcC
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLT-DVSVEILMRYTHA-GE-TSTYAGVMRESFG 93 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~-~~s~~~l~~~~~~-~~-~~~y~~l~~~~~G 93 (360)
++|+.|.++.+...+++++|.+ .+|.++++.|.. +++..++.+.+. ........|.+.. ++ ...-.+-.++++|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 4578999999999999999976 569889888874 555555555443 3344556776443 43 4678888999999
Q ss_pred hhHHHHHH
Q 039811 94 RAGSVAAQ 101 (360)
Q Consensus 94 ~~g~~~~~ 101 (360)
|+.+++..
T Consensus 82 ~~~gf~~~ 89 (496)
T PRK15238 82 PKFAFIGT 89 (496)
T ss_pred chHHHHHH
Confidence 98887654
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.20 E-value=6.1e-05 Score=74.27 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=133.5
Q ss_pred HHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHh
Q 039811 31 ATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRAGSVAAQLCVMITN 108 (360)
Q Consensus 31 ~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~ 108 (360)
+.+++|+|.+ ..+.+..++|.....+..++.+++...+..-+.|.+++ ++...+.+.+++.+|+.....+....+...
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~ 86 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSY 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHH
Confidence 4577888876 67778889998767788888888888888888887664 567788899999999988777777755555
Q ss_pred hhhHHHHHHHhhhchhhh--hHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHH----HHHHHHHHHHHHHHHHH-
Q 039811 109 LGCLIIFFIIIGSVHLGV--LQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSA----ISVLLAVMFVAICSVMA- 181 (360)
Q Consensus 109 ~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~----~s~~~~~~~~~~~~~~~- 181 (360)
...........+..++.. .++.. ..|. ... +...+..++..-+.+...|.... +.. .-+..++..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~-i~~~~li~~ii~~~ 162 (478)
T PF00324_consen 87 IAAIAAEATAAGSFLQFWGYFPGLP-STWV-WGI-LIAIIFILLITLLNLFGVRVSGKIEFILTI-IKLIALIAFIIVGV 162 (478)
T ss_pred HHHHHhhhhhhhhhhcccccccccc-cccc-ccc-hhhhhhhhhhhhhhhhhhhccchHHHHHHH-HhhhHhhhhhhhcc
Confidence 555555555555444333 11111 0111 100 11122222233333323121111 221 1111111111111
Q ss_pred HHHHhcCCCCCC----------CCCccc---Cccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHH
Q 039811 182 IYAVGEGKSKSP----------KLLPQL---DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLV 243 (360)
Q Consensus 182 ~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~ 243 (360)
+.....++.... +..|+. ....++.+++.++....++|.+-.. -+|.|||+ +.+|+...+..
T Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~ 242 (478)
T PF00324_consen 163 IILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVL 242 (478)
T ss_pred cccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhh
Confidence 111111111111 011100 0112356788899999999998776 78899999 78999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 039811 244 LCTAIYFSVGLFGYLLFGES 263 (360)
Q Consensus 244 ~~~~~y~~~g~~gy~~fG~~ 263 (360)
.+.++|.......-...+.+
T Consensus 243 ~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 243 RIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhcccccCcc
Confidence 99999998877666655544
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.12 E-value=0.0058 Score=60.75 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHH--HHHHHHHHhhh-c-CCCCHHHHHHHHcC
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDV--SVEILMRYTHA-G-ETSTYAGVMRESFG 93 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~--s~~~l~~~~~~-~-~~~~y~~l~~~~~G 93 (360)
.+|.|.++.++..+.... ++-.+| .+++.|+ +.+...+++.+.+. ......|.... . +.....+-+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 456788877777766665 456888 5778884 44444555544433 45556665443 2 45667788899999
Q ss_pred hhHHHHHHHHHHHHhh
Q 039811 94 RAGSVAAQLCVMITNL 109 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~ 109 (360)
++.+++.....+....
T Consensus 78 ~~~Gf~~~~~~W~~~~ 93 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIA 93 (507)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9888876555555443
No 53
>PRK11375 allantoin permease; Provisional
Probab=98.07 E-value=0.011 Score=58.33 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHHHHHH-HHhhhhHHHHHHHhhhchhhhhH
Q 039811 50 GVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVM-ITNLGCLIIFFIIIGSVHLGVLQ 128 (360)
Q Consensus 50 G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~-~~~~g~~~~y~i~~~~~l~~~~~ 128 (360)
++..+++..++-..+...-+.+..+...+ ...++.-+.|..||++|.++..+... +...+=-.......++.+..++.
T Consensus 58 s~~~ai~ai~lG~~i~~~~~~l~g~~G~~-~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~ 136 (484)
T PRK11375 58 STFSIMLAIILSAFFIAAVMVLNGAAGSK-YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIG 136 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333333 46789999999999999888888874 45566555666666777666655
Q ss_pred hhhcc------c----cccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-C
Q 039811 129 EWCGF------H----WWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSP-K 194 (360)
Q Consensus 129 ~~~~~------~----~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (360)
..++. + ..........++..++..|+.+.+ ++++..++........+...+.++... + ..+. +
T Consensus 137 ~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g-~~~~~~ 213 (484)
T PRK11375 137 KIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--G-IGPIFD 213 (484)
T ss_pred HhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C-Cchhhc
Confidence 44321 0 011222333334445667777644 666666555432222222222222221 1 1111 1
Q ss_pred CCcc--cCccccccccccchhhhhhhhc----cccc-cccccCCCchHHHHHHHHHHHHHHHHHHHHHH----HhhcCCC
Q 039811 195 LLPQ--LDNHVSLFDLFPAVPVIVTAFT----FYFN-GFELDKPSDMITAVRISLVLCTAIYFSVGLFG----YLLFGES 263 (360)
Q Consensus 195 ~~~~--~~~~~~~~~~~~~~~i~~faf~----~~~~-~~~m~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~ 263 (360)
..|. .........+..++....-++. ..++ .+..|++++-.+....++.+...+...+|+.. ...+|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~ 293 (484)
T PRK11375 214 YIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD 293 (484)
T ss_pred cCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111 1111122334444444344444 2223 44456766555555556666655554444433 3455543
No 54
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00065 Score=65.91 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=143.9
Q ss_pred CCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChh
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRA 95 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 95 (360)
+|+...+.-.+.-+...+|+|.+ +...+++++|-...++...+++.+.+..+..+.|.+.. +...++...+.+...+-
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa 122 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPA 122 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCch
Confidence 36667788888899999999987 89999999999988899999999999999999997664 45556999999999988
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhh--hh-----hhhHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLAL--FG-----LVGYSAISVL 168 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~-----l~~~s~~s~~ 168 (360)
..+.+.-..++.-...+..-+...+..++ .|.+... ....|.. +..++++-+-+ .| --++|.+=++
T Consensus 123 ~GFa~gWnYw~~w~v~~~~El~aa~~vi~----yW~p~~v--~~~~w~~-iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 123 FGFALGWNYWLNWAVTLPLELTAASLVIQ----YWFPDTV--PPWIWIA-IFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhh----hhcCCCC--ChHHHHH-HHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 88777766666666666665655555433 3321110 2222332 33334444333 33 2233443333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC---CCCcc-cCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 169 LAVMFVAICSVMAIYAVGEGKSKSP---KLLPQ-LDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
..+.|++..++. ++....+ +.+ +++.+ -.-.+++.++...+-...|+|.+... -.|-+||+ ..+|+..
T Consensus 196 ~ii~Fii~gii~-~~Gg~~~--~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik 272 (541)
T COG0833 196 TIIGFIILGIII-ICGGGPT--HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIK 272 (541)
T ss_pred HHHHHHHHHHHH-hcCCCCC--CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHH
Confidence 223344333221 1211111 111 11110 01113455677777788899998877 77889988 6788888
Q ss_pred HHHHHHHHHHHHH
Q 039811 240 ISLVLCTAIYFSV 252 (360)
Q Consensus 240 ~a~~~~~~~y~~~ 252 (360)
-.+-=+.++|+..
T Consensus 273 ~vfwRIl~FYi~s 285 (541)
T COG0833 273 QVFWRILLFYILS 285 (541)
T ss_pred HHHHHHHHHHHHH
Confidence 8888788888763
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.99 E-value=0.0022 Score=58.43 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhHhHhHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHH
Q 039811 25 GAVFNVATSIIGAGIMSIA---ATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQ 101 (360)
Q Consensus 25 ~~~~~l~~~~iG~GiL~lP---~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~ 101 (360)
+-.+..+.+.+|+|.=+== .=|..=|+. |..-.++++++-..++..+.+.+++-+..+|+|.-++.+||+..++.+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHH
Confidence 4456666789998864311 112233554 777778888888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 102 LCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 102 i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
+.+.++.++.++.-+.-.++.+++.
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~ 110 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHH
Confidence 9999999999999888888755444
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.79 E-value=0.016 Score=56.43 Aligned_cols=228 Identities=13% Similarity=0.025 Sum_probs=104.5
Q ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCC-HHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHH
Q 039811 40 MSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETST-YAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFI 117 (360)
Q Consensus 40 L~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~-y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i 117 (360)
-+|++....+|-..-+-..++.+.+...+..-|.|.+. .++... |--.+..+=-|+++.+..+.-.....|-....-.
T Consensus 71 tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aS 150 (550)
T KOG1289|consen 71 TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVAS 150 (550)
T ss_pred hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchh
Confidence 36667776566554444456666777777778888543 333333 3333333322333333333333333332222221
Q ss_pred HhhhchhhhhH--hhhccccccchHHHHHHHHHHHHhhhhh----h-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039811 118 IIGSVHLGVLQ--EWCGFHWWNTRVIALLFVMVFVMLPLAL----F-G-LVGYSAISVLLAVMFVAICSVMAIYAVGEGK 189 (360)
Q Consensus 118 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pl~~----~-~-l~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~ 189 (360)
.....-+.++. ...++++..++..+ ..+..++.+-.++ + | +++++.+++.......++..+.... ..+++
T Consensus 151 i~~S~A~~i~~~v~l~np~y~~~~~~~-~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla-~~~~k 228 (550)
T KOG1289|consen 151 ITYSLAQLILGAVSLTNPNYEPTNYHQ-FGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLA-ASSKK 228 (550)
T ss_pred hhHHHHHHHHHHHhhcCCCCcccceEe-ehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCC
Confidence 11111111111 12233333333211 1222223333332 3 3 8888888876554444433322211 11222
Q ss_pred --CCCCCC-CcccCccccccc----cccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHHHHHHHHHHHH
Q 039811 190 --SKSPKL-LPQLDNHVSLFD----LFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTAIYFSVGLFGY 257 (360)
Q Consensus 190 --~~~~~~-~~~~~~~~~~~~----~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~~y~~~g~~gy 257 (360)
+++.+. +.+..+.++|.+ +.-++-.....+.+... -+|-||++ +-++.+..+..+.+++=+.+-+.-.
T Consensus 229 ~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~ 308 (550)
T KOG1289|consen 229 TGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIA 308 (550)
T ss_pred CCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 223334444432 11111111111111111 55678887 7789999999998888888777777
Q ss_pred hhcCCCchhhHh
Q 039811 258 LLFGESIMSDIL 269 (360)
Q Consensus 258 ~~fG~~~~~~il 269 (360)
+.-+++.+....
T Consensus 309 ~~i~~D~~~v~n 320 (550)
T KOG1289|consen 309 YTIPDDLDAVLN 320 (550)
T ss_pred HhccchHHHHhc
Confidence 777764444333
No 57
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.76 E-value=0.0023 Score=59.49 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=101.2
Q ss_pred CCCCCCCCCCCCCCC--CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Q 039811 3 PAPGLQAPLLPNSKT--EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMR-YTHAG 79 (360)
Q Consensus 3 ~~~~~~~~l~~~~~~--~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~-~~~~~ 79 (360)
.||++++|-...++. --.++.+..+-|-..++-|+|...=|-.-.+-||+++.+++++-+++.---.-+..- ++-|+
T Consensus 32 ~d~~~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~ 111 (376)
T PF02554_consen 32 LDDSRPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH 111 (376)
T ss_pred CCCCCCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC
Confidence 577777876555553 345677888999999999999999999999999999999988877765555545444 46789
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhh
Q 039811 80 ETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLG 125 (360)
Q Consensus 80 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 125 (360)
+.+|.+|++++..||+++.+..+..++.+.....++....++.+..
T Consensus 112 ~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 112 KGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999888888888776644
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.044 Score=52.78 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhh
Q 039811 85 AGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVG 161 (360)
Q Consensus 85 ~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~ 161 (360)
-.+.|..||++|.++..+.+.+.+.|=...-.+..++... ...+ ....+..++..+++.-.++.. ++.
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~----~~~~-----~~~~~~ili~g~l~~l~~ifG~r~l~~ 154 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIG----SGTG-----LPVWAGILIIGVLMTLVTIFGYRALHK 154 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccc----cCCC-----CcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999988888888777511 1111 111122223333344444433 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcccCccccccccccchhhhhhhhccccc-----cccccCCC--c
Q 039811 162 YSAISVLLAVMFVAICSVMAIYAVGE-GKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN-----GFELDKPS--D 233 (360)
Q Consensus 162 ~s~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~-----~~~m~~~~--~ 233 (360)
++..+.... ........+...+ .+..+..+.+ ...++.++..+++...-.+..-.. .+.+|+|+ |
T Consensus 155 l~~~a~~~~----~~lf~~l~~~~~~~~~~~~~~~~~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~ 227 (442)
T COG1457 155 LERIAVPLL----LLLFLYLLALLFRSKGGLDALWVK---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSK 227 (442)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhcccccceeecc---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHH
Confidence 555554321 1111122333333 1122111111 123344444444432222221111 45567776 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhHhhCC
Q 039811 234 MITAVRISLVLCTAIYFSVGLFGYLLFGESI-MSDILVNF 272 (360)
Q Consensus 234 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il~n~ 272 (360)
.-.....+......+-+.+|.+...+-|+.. ..+....+
T Consensus 228 ~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~ 267 (442)
T COG1457 228 AFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL 267 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc
Confidence 6667777777778888888888888888766 33333333
No 59
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00018 Score=71.35 Aligned_cols=237 Identities=12% Similarity=0.038 Sum_probs=145.7
Q ss_pred CCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-CCCHHHHHHHHcCh
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GE-TSTYAGVMRESFGR 94 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~-~~~y~~l~~~~~G~ 94 (360)
.|+.+.+.-.+.-+.+++|+|++ ....+.++.|=..-++-.++.+...+.+...+.|-+.+ +. ..++...+.+..|+
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 46678888888889999999998 67888888887767777777888888888889987554 44 36788888889999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhh-Hhhhc-c-ccccchHHHHHHHHHHHHhhhhhhh----hhhHHHHHH
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVL-QEWCG-F-HWWNTRVIALLFVMVFVMLPLALFG----LVGYSAISV 167 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~ 167 (360)
-..+++.--.++.-...+.+-....+..++... .+... . +..+..-.....+..++.+-+.-.+ .++...+.-
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~k 188 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNK 188 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHH
Confidence 888888877777777777777777776655543 00000 0 0000010011111222223333333 333322222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC--CCC-------cccCccccccccccchhhhhhhhccccc----cccccCCC-c
Q 039811 168 LLAVMFVAICSVMAIYAVGEGKSKSP--KLL-------PQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-D 233 (360)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~ 233 (360)
++..+-.++..+ . +.-|..+.+ ++. |....+..+.+++.++....|+|.+-.. -+|-|||+ .
T Consensus 189 vl~~v~~~Il~i---V-i~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~ 264 (554)
T KOG1286|consen 189 ILTAVGFIILAI---V-IIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKA 264 (554)
T ss_pred HHHHHHHHHhhe---e-eecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCccc
Confidence 222111111111 1 111222221 111 1111122366788889999999998777 78889998 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 039811 234 MITAVRISLVLCTAIYFSVGLFGYL 258 (360)
Q Consensus 234 ~~~~~~~a~~~~~~~y~~~g~~gy~ 258 (360)
.+++...++..+.++|+...+.--+
T Consensus 265 IP~ai~~s~~ri~~~Yi~~~~~l~l 289 (554)
T KOG1286|consen 265 IPKAIKQSLLRILLFYILSSIVLGL 289 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHheE
Confidence 8999999999999999988775443
No 60
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.58 E-value=0.078 Score=50.79 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=110.6
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhH
Q 039811 49 LGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQ 128 (360)
Q Consensus 49 ~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~ 128 (360)
.++..+++..++-..+...-.-+......| ...++.-+.|..||++|.++..+...+...|=-.......++.+..+.+
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~-~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGAD-TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444333333333333333 3667899999999999999999999999988888888888888888876
Q ss_pred hhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCccccc
Q 039811 129 EWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSL 205 (360)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (360)
..++.+ ...... .+..++..+.+... ++++..++..+.....+... .....+.+.++ ...+ +. +
T Consensus 105 ~~~~~~---~~~~~~-~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~-~~~~--~~--~- 171 (386)
T TIGR02358 105 RLFGEE---SPMLWI-LIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLL---VVVFSKADLSE-LWNR--AG--D- 171 (386)
T ss_pred HhcCCC---chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccchhh-hcCC--CC--C-
Confidence 544322 111122 23333455555544 66666666542221111111 11111211111 1111 11 1
Q ss_pred cccccchhhhh---hhhc-cccc-cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039811 206 FDLFPAVPVIV---TAFT-FYFN-GFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGES 263 (360)
Q Consensus 206 ~~~~~~~~i~~---faf~-~~~~-~~~m~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 263 (360)
..+..+++... -++. ..++ .+..|+|+|..+....+..+...+...+|.....+.++.
T Consensus 172 ~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 172 MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22222222211 1122 1333 444577777777888888888888888998887777764
No 61
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.18 E-value=0.035 Score=53.40 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCCCH-----HHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYT----HAGETSTY-----AGV 87 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~----~~~~~~~y-----~~l 87 (360)
+++.|.+|+......+.+|+| ++.+|.+.+.+| -.+++++-+.+++..-+.+...-.. ++.+..+| .++
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 345899999999999999998 999999988887 4466666666666555544433332 23333337 788
Q ss_pred HHHHcChhHHHHHHHH
Q 039811 88 MRESFGRAGSVAAQLC 103 (360)
Q Consensus 88 ~~~~~G~~g~~~~~i~ 103 (360)
-+...|||...+..++
T Consensus 123 ~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHhCccHHHHHHHHH
Confidence 8888888877776666
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.12 E-value=0.28 Score=47.24 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhH
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAG 96 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g 96 (360)
.|+.+++...+.+..+.+|++ .++.|-...+.|+. +....+............+.+-.++.+..|.+|.-++-+|++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence 466788888889988888775 55778887788874 3333333333334445556666668899999999999999988
Q ss_pred --HHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 97 --SVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 97 --~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
+.+..+..+..........+...+..++.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~ 115 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVL 115 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhc
Confidence 666666666666666667666666655444
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.03 E-value=0.4 Score=47.50 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=82.8
Q ss_pred CCCCCchHHHHHHHHHHHHh-HhHhHHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNVATSIIG-AGIMSIAATVKVLGVIPAFVLIV---IIAWLTDVSVEILMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~~f~~~G~~~gii~lv---~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (360)
..|+.+.+...+....+.++ --.+++|-...+.|+....+..- .....-.+-...+.+-+++.+..|.+|.-++-|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 35666777788888888877 77889999999998764433333 222333334444555556678999999999999
Q ss_pred C-hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 93 G-RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 93 G-~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
| |+.+.+..+...+.....+...+...+..++..
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~ 150 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLL 150 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9 899999999999999999999999999866444
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.99 E-value=0.43 Score=47.17 Aligned_cols=110 Identities=8% Similarity=0.001 Sum_probs=68.0
Q ss_pred CCCCCchHHHHHHHHHHHHhH-hHhHHHHHHHHhCHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNVATSIIGA-GIMSIAATVKVLGVIPAFVL---IVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~f~~~G~~~gii~---lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (360)
..|+.+++...+.+..+.+|+ ..++.|-...+.|+...... .........+-...+.+-.++.+..|.+|..++-|
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARY 118 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHh
Confidence 367778888888888887766 45577766666675311111 11111111122333445567889999999999999
Q ss_pred Chh-HHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 93 GRA-GSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 93 G~~-g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
|++ .+.+..+......+......+...+..++.+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~ 153 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETA 153 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 4556666666666666666666667655554
No 65
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.97 E-value=0.016 Score=56.52 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=71.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHhHhHhHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHc
Q 039811 15 SKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKV--LGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~--~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (360)
++++|+.+.++-+..-....+....+.+...... .++..+++.+++-.++...-..+......|+ ..+...+.|..|
T Consensus 3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~F 81 (440)
T PF02133_consen 3 PESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASF 81 (440)
T ss_dssp --GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS
T ss_pred chhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhcc
Confidence 3455566677766666666666666555555432 3455666666555555444444444444443 567888999999
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhh
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWC 131 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 131 (360)
|++|..+..+...+...|-...-....++.+..+.+..+
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999998888888888888888766543
No 66
>PRK15015 carbon starvation protein A; Provisional
Probab=96.89 E-value=0.027 Score=56.11 Aligned_cols=122 Identities=12% Similarity=0.169 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCCCCCC--CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 039811 2 SPAPGLQAPLLPNSKT--EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMR-YTHA 78 (360)
Q Consensus 2 ~~~~~~~~~l~~~~~~--~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~-~~~~ 78 (360)
..||++++|--..++. --.++.+..+-|=..++-|+|.+-=|.--.|-||.++.+++++-.++.---.-+..- ++.|
T Consensus 62 ~lD~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R 141 (701)
T PRK15015 62 AVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR 141 (701)
T ss_pred cCCCCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec
Confidence 4577778876555552 233455566778999999999999999999999999999988766654433333333 4668
Q ss_pred cCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhch
Q 039811 79 GETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVH 123 (360)
Q Consensus 79 ~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l 123 (360)
++.+|..|++++..||+++.+..+..++.+.....++...+.+.+
T Consensus 142 ~~GrSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 142 RDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred CCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988888887777777777654
No 67
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.89 E-value=0.46 Score=45.80 Aligned_cols=108 Identities=8% Similarity=-0.034 Sum_probs=75.6
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcCh-h
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGR-A 95 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 95 (360)
.|+.+++...+.+..+.+|++ .++.|-...+-|+. +...............++..+..++.+..|.+|..++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 366778888888888777665 44777777777853 33222223333344555666666777899999999999998 5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
.+.+..+...+..+......+...+..++.+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~ 111 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELI 111 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888888888888777766555
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=96.75 E-value=0.59 Score=45.09 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=47.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchh
Q 039811 49 LGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHL 124 (360)
Q Consensus 49 ~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~ 124 (360)
.++..+++..++-..+...-..+......| ...++..+.|..||++|.++..+...+...+=........++.++
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k-~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~ 113 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAK-TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVV 113 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555555554444433333333333333 367899999999999999999888887777655555555554433
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.63 E-value=0.8 Score=45.08 Aligned_cols=110 Identities=6% Similarity=0.007 Sum_probs=71.1
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHH--HHHHH-HHHHHHHHHHHhhhcCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIV--IIAWL-TDVSVEILMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv--~~~~~-~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (360)
..|+.+++...+.+..+.+|++.+ +.|--..+.|+........ ..+.+ ...-...+.+..++.+..|.+|.-++-|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARY 117 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence 367889999999999998887665 6676666677631111000 01111 1111223344456788999999999999
Q ss_pred Chh-HHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 93 GRA-GSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 93 G~~-g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
|++ .+.+..+......++...+.+...+..++.+
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~ 152 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESL 152 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 955 4677788777777777776666666655444
No 70
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.62 E-value=0.016 Score=56.45 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCCCCCCCCCCCCCCC--CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 039811 2 SPAPGLQAPLLPNSKT--EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMR-YTHA 78 (360)
Q Consensus 2 ~~~~~~~~~l~~~~~~--~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~-~~~~ 78 (360)
.-||++++|--..++. --.++.+..+-|-..++-|+|.+.=|---+|-||.++.+++++-+++.---.-+++- .+.|
T Consensus 31 ~~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR 110 (575)
T COG1966 31 RLDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR 110 (575)
T ss_pred ecCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec
Confidence 4578888886666653 235577888889999999999999999999999999999988877665444444443 4668
Q ss_pred cCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhch
Q 039811 79 GETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVH 123 (360)
Q Consensus 79 ~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l 123 (360)
++.+|.+|++++.+|++.+.+..+...+.......++...+.+.+
T Consensus 111 ~~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 111 HGGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred cCCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998888877777777766666443
No 71
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.095 Score=51.56 Aligned_cols=222 Identities=13% Similarity=0.150 Sum_probs=124.1
Q ss_pred CCchHHHH-----HHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCHHHHHHHHc
Q 039811 20 RPWVSGAV-----FNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAG--ETSTYAGVMRESF 92 (360)
Q Consensus 20 ~~s~~~~~-----~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~--~~~~y~~l~~~~~ 92 (360)
+-++++++ .|+.+-++ .|=++|-..|+|...+++++.+...++..|..-..-..++. +..--.-+..+.+
T Consensus 29 ~fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 34555554 45555544 56889999999999999988887777666654433333322 1111122334455
Q ss_pred ChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 039811 93 GRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVM 172 (360)
Q Consensus 93 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~ 172 (360)
|+-..--+.+...+.+--+|..|.+-.+|.+.++++... .+.-.. +..++.++.+.++..+.++.+.+-+++-.+
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--~~~i~g---i~~vt~~ill~i~~ag~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--KEMIDG---IGSVTVLILLAINVAGVEWEAKLQIVLLLI 180 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--HHHhcc---hhHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 655555566666777888889999999999988887642 111111 223444455556665566666665532111
Q ss_pred HHHHHHHHHHHHHh-cCCCC-------C----CCCCcccCccccccccccchhhhhhhhc---cccc-cccccCCC-chH
Q 039811 173 FVAICSVMAIYAVG-EGKSK-------S----PKLLPQLDNHVSLFDLFPAVPVIVTAFT---FYFN-GFELDKPS-DMI 235 (360)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~i~~faf~---~~~~-~~~m~~~~-~~~ 235 (360)
.++...-..+-.++ .++.+ . .+..|+..+. ..++.-++++.=+.. +..| ..++|+|+ ..+
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP 257 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGDLKDPQKAIP 257 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCCCCCchhhcc
Confidence 11111000011111 11010 0 0111222211 234555566655553 3334 88999998 788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039811 236 TAVRISLVLCTAIYFSV 252 (360)
Q Consensus 236 ~~~~~a~~~~~~~y~~~ 252 (360)
+....+......+|..+
T Consensus 258 ~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 258 LGALLAIGVSTLLYLIF 274 (643)
T ss_pred cchhhhhhhhhhhhhhh
Confidence 89999999999988554
No 72
>PRK12488 acetate permease; Provisional
Probab=94.86 E-value=4.9 Score=40.46 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=72.1
Q ss_pred CCCCchHHHHHHHHHHHHhHhH-hHHHHHHHHhCHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCHHHHHHHHcC-h
Q 039811 18 EKRPWVSGAVFNVATSIIGAGI-MSIAATVKVLGVIPAFVLIVIIAWLTDV-SVEILMRYTHAGETSTYAGVMRESFG-R 94 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~f~~~G~~~gii~lv~~~~~~~~-s~~~l~~~~~~~~~~~y~~l~~~~~G-~ 94 (360)
.|+.+++...+.+..+.++++. ++.|-...+.|+- +....+. ..+.+. ...++.+--++.+..|.+|.-++=|| |
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~ 143 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQG 143 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCC
Confidence 6778888888999988777665 6899877788874 3222211 111211 12334444556778999999988887 6
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
..+.+..+.............+...+..++.+
T Consensus 144 ~~r~laai~~i~~~~~yl~~q~~g~g~il~~l 175 (549)
T PRK12488 144 PVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL 175 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888777777777777777777655544
No 73
>PRK10484 putative transporter; Provisional
Probab=94.82 E-value=4.9 Score=40.21 Aligned_cols=90 Identities=8% Similarity=0.016 Sum_probs=57.0
Q ss_pred CCCCCchHHHHHHHHHHHHhHhH-hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGI-MSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (360)
..|+.+++...+.+..+.++++. ++.|-...+.|+... ................+.+-.+|.+..|.+|.-++-||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCch
Confidence 46788888888888888766654 477776667786431 1111111111123333444445678899999999999988
Q ss_pred HHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMIT 107 (360)
Q Consensus 96 g~~~~~i~~~~~ 107 (360)
.+.+......+.
T Consensus 115 ~~~~~~~~~~i~ 126 (523)
T PRK10484 115 TRRIVSILFLIG 126 (523)
T ss_pred hHHHHHHHHHHH
Confidence 777766654443
No 74
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.33 E-value=1.3 Score=42.27 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=54.6
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhh
Q 039811 49 LGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVL 127 (360)
Q Consensus 49 ~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~ 127 (360)
+|.+.++.+..+...+.+....-..+..+. ++..-..+++++.+|+.|+.+..+...+.|+.+++......+|..++..
T Consensus 221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455544444444444444333222211111 2455577899999999999999999999999999999999998776664
Q ss_pred H
Q 039811 128 Q 128 (360)
Q Consensus 128 ~ 128 (360)
+
T Consensus 301 ~ 301 (378)
T TIGR00796 301 P 301 (378)
T ss_pred C
Confidence 3
No 75
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=93.47 E-value=9.4 Score=38.44 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=67.4
Q ss_pred CCCCchHHHHHHHHHHHHh-HhHhHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHcC-h
Q 039811 18 EKRPWVSGAVFNVATSIIG-AGIMSIAATVKVLGVIPAFVLIVIIAWLTD-VSVEILMRYTHAGETSTYAGVMRESFG-R 94 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG-~GiL~lP~~f~~~G~~~gii~lv~~~~~~~-~s~~~l~~~~~~~~~~~y~~l~~~~~G-~ 94 (360)
.|+.+++...+.+..+.++ ...++.|-...+.|+- +....+. ..+.+ ....++.+--++.+..|.+|..++=|| |
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLGRYTFADVASYRLKQR 143 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCc
Confidence 5677778877777777665 5677888777777864 3322221 11112 233445555567788999999988887 5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 95 AGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 95 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
..+.+..+.............+...+..++.+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~ 175 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELL 175 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56767666666665555566666666644444
No 76
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.44 E-value=7.4 Score=37.13 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=41.6
Q ss_pred HHHHHHHhHhHhHHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHH
Q 039811 29 NVATSIIGAGIMSIAATVK-VLG--VIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQ 101 (360)
Q Consensus 29 ~l~~~~iG~GiL~lP~~f~-~~G--~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~ 101 (360)
.+..-.+|+|.|-.|-... ++| |..+.+..++.++..-..... +..+. ..+|+++.++.- |+...+..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~~~g-~~f~~lf~ 73 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSARIG-KVFGILFT 73 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHHHhC-hHHHHHHH
Confidence 4566789999999888776 344 566666666666654443333 22222 357888887765 44444433
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.34 E-value=7.1 Score=39.68 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=28.1
Q ss_pred cccccCCC-chHHHHHHHHHHHHHHHHHHHHHHH
Q 039811 225 GFELDKPS-DMITAVRISLVLCTAIYFSVGLFGY 257 (360)
Q Consensus 225 ~~~m~~~~-~~~~~~~~a~~~~~~~y~~~g~~gy 257 (360)
-.|+|+|+ ..++-...+.+.++++|.++.++--
T Consensus 317 SgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 317 SGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred CccccCccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 77999999 7899999999999999998766543
No 78
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=93.33 E-value=9.1 Score=37.87 Aligned_cols=108 Identities=9% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----hh-hcCCCCHHHHHHHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRY----TH-AGETSTYAGVMRES 91 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~----~~-~~~~~~y~~l~~~~ 91 (360)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. .................+.+- .+ +++..|.+|.-++=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 677888888888888877655 456886666778743 222121112122223333322 22 56788999999999
Q ss_pred cChhHH---HHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 92 FGRAGS---VAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 92 ~G~~g~---~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
||++.+ .+..+...+.........+...+..++.+
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~ 151 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFEST 151 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996433 33444333333333344444444444333
No 79
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.10 E-value=1.5 Score=42.30 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=57.7
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 039811 43 AATVKVLGVIPAFVLIVIIAWLTDVSVEILMRY-THAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGS 121 (360)
Q Consensus 43 P~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~-~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~ 121 (360)
-....++|.+.++.+.++-..+.+.....-... ...++..=..+++++.+|+.|..+..+...+.|+-+++.-....+|
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~ 300 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAE 300 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566655555554444433332221111 1122333467899999999999999999999999999999999999
Q ss_pred chhhhhH
Q 039811 122 VHLGVLQ 128 (360)
Q Consensus 122 ~l~~~~~ 128 (360)
..++..+
T Consensus 301 yf~~~~~ 307 (427)
T PF05525_consen 301 YFSELFP 307 (427)
T ss_pred HHHHHhc
Confidence 8877755
No 80
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=92.10 E-value=13 Score=36.51 Aligned_cols=195 Identities=18% Similarity=0.161 Sum_probs=89.2
Q ss_pred cCCCCHHHHHHHHcChhHHH---HHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhcc----c------cccchHHHHHH
Q 039811 79 GETSTYAGVMRESFGRAGSV---AAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGF----H------WWNTRVIALLF 145 (360)
Q Consensus 79 ~~~~~y~~l~~~~~G~~g~~---~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~------~~~~~~~~~~~ 145 (360)
....+|+.+.|..||-+|.. +......+.-||.-+ -..+..+.-++...++. + .....+.....
T Consensus 100 ~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ 176 (497)
T COG1953 100 KYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFF 176 (497)
T ss_pred ccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHH
Confidence 35779999999999987764 444445555555322 23333333343333321 0 11223333333
Q ss_pred HHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCc--ccCccccccccccchhhhhhhh
Q 039811 146 VMVFVMLPLALFG---LVGYSAISVLLAVMFVAICSVMAIYAVGEGK-SKSPKLLP--QLDNHVSLFDLFPAVPVIVTAF 219 (360)
Q Consensus 146 ~~~~~~~pl~~~~---l~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~~faf 219 (360)
+.=++.++..+.+ +|++-..+-... .+++...+++...+.+ .....+.| ..+....++.+...+...+--|
T Consensus 177 ifW~l~~l~~~~g~~~Ir~~~~~a~p~~---~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~ 253 (497)
T COG1953 177 IFWVLQLLVLFKGMESIRKFETWAGPLV---YIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFW 253 (497)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhchHH---HHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 3334455555544 555544443222 2222223333333221 11112222 1122222333333332222222
Q ss_pred c----cccc-cccccCCCchH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhHhhCCCCCCchH
Q 039811 220 T----FYFN-GFELDKPSDMI----TAVRISLVLCTAIYFSVGLFGYLLFGESI--MSDILVNFDQSSGSA 279 (360)
Q Consensus 220 ~----~~~~-~~~m~~~~~~~----~~~~~a~~~~~~~y~~~g~~gy~~fG~~~--~~~il~n~~~~~~~~ 279 (360)
. ..+. -+.-|+|+.-. ..+-..+.+..++-...+..++..||+.. ..++..++++.....
T Consensus 254 Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~ 324 (497)
T COG1953 254 ATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAA 324 (497)
T ss_pred HHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHH
Confidence 1 2222 34445544222 23334444455555556667788899985 447888888665543
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=91.89 E-value=13 Score=36.22 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 039811 80 ETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGS 121 (360)
Q Consensus 80 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~ 121 (360)
..++..|+.++-+||+..++..+.....+.+....-+.-.+.
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~ 133 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAI 133 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999888777666655555555554444443
No 82
>PRK09395 actP acetate permease; Provisional
Probab=91.43 E-value=17 Score=36.59 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=68.1
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcC-hh
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFG-RA 95 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G-~~ 95 (360)
.|+.+++...+.+..+.++++ .++.|-...+.|+-. ........+-......++.+-.++.+..|++|..++=|| |.
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~ 146 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGP 146 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCch
Confidence 677788888888888877754 458887777788742 222111111112223344454567788999999999998 55
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
.+.+..+...+.........+...+..++.+
T Consensus 147 ~r~l~av~~iv~~~~yl~~q~~g~g~il~~~ 177 (551)
T PRK09395 147 IRTLSACGSLVVVALYLIAQMVGAGKLIQLL 177 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666655555555555555544443
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=90.33 E-value=18 Score=34.96 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 80 ETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 80 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
...+.+|..++-++|+..++..+........++++-.+..+--++-+
T Consensus 75 TG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll 121 (416)
T COG1914 75 TGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLL 121 (416)
T ss_pred hCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999988888888888777777666544433
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=90.24 E-value=18 Score=34.89 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHH----
Q 039811 15 SKTEKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA----GETSTYA---- 85 (360)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~----~~~~~y~---- 85 (360)
++++++.|.+|++..-+.+.+|+|-. ...-|...+|-. +++++-+.+++..-+-+.=.-.+.+ .++.+|.
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 34566789999999999999999966 889999888864 7888888777766655543332222 2222332
Q ss_pred HHHHHHcCh-hHHHHHHHH
Q 039811 86 GVMRESFGR-AGSVAAQLC 103 (360)
Q Consensus 86 ~l~~~~~G~-~g~~~~~i~ 103 (360)
...++.+|+ +...+..++
T Consensus 92 yyi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHHhccchHHHHHHHH
Confidence 355666664 444444444
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=90.13 E-value=19 Score=34.92 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHhHhHhHHHHHHHH-hC--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCHHHHHHHHcChhH
Q 039811 21 PWVSGAVFNVATSIIGAGIMSIAATVKV-LG--VIPAFVLIVIIAWLTDVSVEILMRY-THAGETSTYAGVMRESFGRAG 96 (360)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~lP~~f~~-~G--~~~gii~lv~~~~~~~~s~~~l~~~-~~~~~~~~y~~l~~~~~G~~g 96 (360)
......-+.+..-..|+|=|-.|-...+ +| |+.+.+.+.+.++.-- ++.-. ..+.+. ++++++++.--+.+
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP----~Lgvia~~~~~~-~~~~l~~~v~~~f~ 77 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP----LLGVIAVAKSGG-GIEDLASRVGPKFA 77 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHhhcCC-CHHHHhcccCcHHH
Confidence 3455567788889999999999988874 34 7777777777666422 22222 222222 88998887764444
Q ss_pred HH
Q 039811 97 SV 98 (360)
Q Consensus 97 ~~ 98 (360)
..
T Consensus 78 ~i 79 (427)
T PF05525_consen 78 LI 79 (427)
T ss_pred HH
Confidence 43
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=87.77 E-value=30 Score=34.20 Aligned_cols=162 Identities=14% Similarity=0.033 Sum_probs=83.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhHhHhHHHH----HHHHh-------C----HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 039811 12 LPNSKTEKRPWVSGAVFNVATSIIGAGIMSIAA----TVKVL-------G----VIPAFVLIVIIAWLTDVSVEILMRY- 75 (360)
Q Consensus 12 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~----~f~~~-------G----~~~gii~lv~~~~~~~~s~~~l~~~- 75 (360)
+.+++++++-|.++-+..+..+.+|+|++.-.. ...+. + .-.+.....+=+.+..|+.+.+.-.
T Consensus 66 LGg~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~ 145 (485)
T PF02028_consen 66 LGGDDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLA 145 (485)
T ss_dssp SSSTSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345556677788999999999999999875431 11111 1 0112222222222333333332221
Q ss_pred -----hhhcC-----CCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHH
Q 039811 76 -----THAGE-----TSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLF 145 (360)
Q Consensus 76 -----~~~~~-----~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 145 (360)
.++.+ ..-|+-++++.-|+. +.++|++.++...+....-+-....++..-+++.++.+.-..-+..+++
T Consensus 146 ~ay~~y~k~~~~~~ss~l~pl~g~~~~g~~-g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~ 224 (485)
T PF02028_consen 146 IAYFFYNKGKPLRISSALYPLLGDRINGPL-GKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIII 224 (485)
T ss_dssp HHHHHHTS---SSGGGGCHHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHH
T ss_pred HheeeeecCCCCchhhhhhhhcCCcccCcc-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 11222 223566666666654 4677888777777777777777777777777777764321111222221
Q ss_pred HHHHHHhhhhh----hh-hhhHHHHHHHHHHHHHH
Q 039811 146 VMVFVMLPLAL----FG-LVGYSAISVLLAVMFVA 175 (360)
Q Consensus 146 ~~~~~~~pl~~----~~-l~~~s~~s~~~~~~~~~ 175 (360)
+. .++.-.+. .| .|++|-+.+.++...++
T Consensus 225 ~~-~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~ 258 (485)
T PF02028_consen 225 VI-TVIFTISAVSGLDKGIKRLSNINVYLAFALLL 258 (485)
T ss_dssp HH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222 33 88888887765444333
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=87.60 E-value=12 Score=36.43 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=62.3
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 48 VLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 48 ~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
++|.+.++.+.++-..+.+....--....+. ++..=.....++.+|++|+.+..+.....|+-++++-....+|..++.
T Consensus 230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 230 WAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555444444332110000000 122224457889999999999999999999999999999999977666
Q ss_pred hHhhhccccccchHHHHHHHHHHHHhhhhhhh
Q 039811 127 LQEWCGFHWWNTRVIALLFVMVFVMLPLALFG 158 (360)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 158 (360)
.+ . +++.+ .++..++..+++...
T Consensus 310 ~~----i----sY~~~-v~i~~l~S~~lSn~G 332 (439)
T PRK15433 310 VP----L----SYRTL-VFILGGFSMVVSNLG 332 (439)
T ss_pred cC----C----cHHHH-HHHHHHHHHHHHHhH
Confidence 32 1 22323 334445667777665
No 88
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=87.21 E-value=33 Score=34.07 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=61.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHH-----HHHhhhcCCCCHHHHHH
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLT-DVSVEIL-----MRYTHAGETSTYAGVMR 89 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~-~~s~~~l-----~~~~~~~~~~~y~~l~~ 89 (360)
..|+.+++...+.+..+.+++..+ +.|-...+.|+-. . ...+...+. .....++ ....++.+..|.+|.-+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 367888888888888888777665 7888777888643 1 111111111 1111221 22233557889999999
Q ss_pred HHcChhH---HHHHHHHHHHHhhhhHHHHHHHhhhchhh
Q 039811 90 ESFGRAG---SVAAQLCVMITNLGCLIIFFIIIGSVHLG 125 (360)
Q Consensus 90 ~~~G~~g---~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 125 (360)
+=||++. +.+..+.........+...+...+..++.
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~ 154 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFES 154 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998643 33444444444444444444444444433
No 89
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=86.05 E-value=41 Score=33.92 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=70.8
Q ss_pred CCCCCchHHHHHHHHHHHHhH-hHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGA-GIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (360)
..|+.+++...+.+..+.+++ ..++.|-...+.|+-.-... ............++.+-.+|.+..|.+|.-++=||++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCC
Confidence 468889999999998887765 46688877667776421111 1111111223455666667888999999999999854
Q ss_pred -HHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 96 -GSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 96 -g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
.+.+..+.............+...+..++.+
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~ 140 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRF 140 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666666666666666666666555444
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=81.86 E-value=51 Score=31.73 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=57.5
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhh
Q 039811 48 VLGVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGV 126 (360)
Q Consensus 48 ~~G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 126 (360)
..|++.++.+..+...+.+....--..... .++.+=..+..++.||+.|..+...+....|.-+++.-...++|..++.
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~ 307 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKL 307 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777766666555555444110000000 1234447789999999999999999999999999999999999988877
Q ss_pred hH
Q 039811 127 LQ 128 (360)
Q Consensus 127 ~~ 128 (360)
.+
T Consensus 308 ~p 309 (431)
T COG1114 308 VP 309 (431)
T ss_pred cc
Confidence 66
No 91
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=76.10 E-value=42 Score=33.37 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=69.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhHhHhHHH----HHHHHh---CHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039811 13 PNSKTEKRPWVSGAVFNVATSIIGAGIMSIA----ATVKVL---GVI--------PAFVLIVIIAWLTDVSVEILMRYTH 77 (360)
Q Consensus 13 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP----~~f~~~---G~~--------~gii~lv~~~~~~~~s~~~l~~~~~ 77 (360)
.+++++++-|..+-+..+..+-+|.|.+.-+ ....+. |-. .+.....+-+.+..++.+.++-.+-
T Consensus 80 G~~~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalal 159 (537)
T COG1292 80 GKDDEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALAL 159 (537)
T ss_pred CCCCCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 3445555667788888888999999887532 222211 111 3444455555555566665544322
Q ss_pred ------hcC-----CCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccc
Q 039811 78 ------AGE-----TSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFH 134 (360)
Q Consensus 78 ------~~~-----~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 134 (360)
|.+ ..=|+-++++.-|..|+ .++++-++........-+-+...++..-++..++.+
T Consensus 160 aYf~~rk~~pl~lss~l~Pllg~~~~G~~G~-~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip 226 (537)
T COG1292 160 AYFHYRKGLPLLLSSALYPLLGERIKGPIGH-AVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIP 226 (537)
T ss_pred heeeEecCCCchhhhhhhhhhcccccCccch-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 111 22256666665566665 566666665555555556666666766667666644
No 92
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=70.21 E-value=98 Score=29.14 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchh
Q 039811 80 ETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHL 124 (360)
Q Consensus 80 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~ 124 (360)
+.++..|..++-+||+..+...+...+........-+..++.-++
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALN 84 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999888888888777777776666665555443
No 93
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=69.40 E-value=1.2e+02 Score=29.86 Aligned_cols=89 Identities=16% Similarity=0.298 Sum_probs=52.1
Q ss_pred hHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCCCCHHHHHHHHc-ChhHHHHHHHHHHHHhhhhH
Q 039811 36 GAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVE--ILMRYTHAGETSTYAGVMRESF-GRAGSVAAQLCVMITNLGCL 112 (360)
Q Consensus 36 G~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~--~l~~~~~~~~~~~y~~l~~~~~-G~~g~~~~~i~~~~~~~g~~ 112 (360)
-+..|.+|-...-.|+ .|.+-.. +...-|... ++.+--++-+..|++|....=+ -++.|.+..+.-++-.+...
T Consensus 59 aASflGiag~I~~~GY-dG~~Y~i--G~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl 135 (529)
T COG4147 59 AASFLGIAGLIFISGY-DGLIYSI--GWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYL 135 (529)
T ss_pred hHhhhchhHhhhhccc-chHHHHH--HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 3455666655555554 2333322 222223222 3334455678999999655544 56777777777777777777
Q ss_pred HHHHHHhhhchhhhh
Q 039811 113 IIFFIIIGSVHLGVL 127 (360)
Q Consensus 113 ~~y~i~~~~~l~~~~ 127 (360)
++.+.-.+..+..++
T Consensus 136 iaQmvGaG~li~~l~ 150 (529)
T COG4147 136 IAQMVGAGLLISLLL 150 (529)
T ss_pred HHHHHhhHHHHHHHh
Confidence 777777777555543
No 94
>PRK09928 choline transport protein BetT; Provisional
Probab=68.55 E-value=85 Score=32.42 Aligned_cols=161 Identities=16% Similarity=0.048 Sum_probs=83.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhHhHhHHH----HHHHH------hCH----HHHHHHHHHHHHHHHHHHHHHHHHh--
Q 039811 13 PNSKTEKRPWVSGAVFNVATSIIGAGIMSIA----ATVKV------LGV----IPAFVLIVIIAWLTDVSVEILMRYT-- 76 (360)
Q Consensus 13 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP----~~f~~------~G~----~~gii~lv~~~~~~~~s~~~l~~~~-- 76 (360)
.+++++++.|.++-+..+..+-+|+|++.-. ..-.+ .|- -.+.....+=+.+..++.+.++-.+
T Consensus 85 G~~d~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalA 164 (679)
T PRK09928 85 GPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALG 164 (679)
T ss_pred CCCCCCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444556778888888999999999987432 22111 111 1233444444445555555544332
Q ss_pred ----hhcCCCCHHHHHHHHcC-----hhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHH
Q 039811 77 ----HAGETSTYAGVMRESFG-----RAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVM 147 (360)
Q Consensus 77 ----~~~~~~~y~~l~~~~~G-----~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (360)
++....+.++..+-.+| +.| .+++++.++...+....-+=+...++..-+.+.++.+.-..-+..+++ .
T Consensus 165 Yf~yr~~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~-v 242 (679)
T PRK09928 165 YFSYRYNLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIA-L 242 (679)
T ss_pred HHhhcCCCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH-H
Confidence 12333455555555554 444 466666666555555555555555666665666653321112222221 1
Q ss_pred HHHHhhhhh----hh-hhhHHHHHHHHHHHHHH
Q 039811 148 VFVMLPLAL----FG-LVGYSAISVLLAVMFVA 175 (360)
Q Consensus 148 ~~~~~pl~~----~~-l~~~s~~s~~~~~~~~~ 175 (360)
..++.-++. .| .|.+|-+.+.+++..++
T Consensus 243 i~~i~~~S~~sGl~KGIk~LS~lN~~La~~Lll 275 (679)
T PRK09928 243 SVIIATISVTSGVNKGIRVLSELNVLLALGLIL 275 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222332 23 88888888765544443
No 95
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=63.69 E-value=1.6e+02 Score=29.16 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=77.2
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHc
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLG--VIPAFVLIVIIAWLTDVSVEILMRYTHA--GETSTYAGVMRESF 92 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G--~~~gii~lv~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~ 92 (360)
+++.-|+++-+..=....++++.--...+--+.| |..+++...+-- .++...++-.++. +=+.+++-..|..|
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~---~~~~~f~~lns~~G~~yhIsFpv~sR~sF 128 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGY---LFTAIFLVLNSRPGSDYHISFPVLSRSSF 128 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHH---HHHHHHHHHccCCCcccccceeeeeeeeh
Confidence 3555688877777666777777666666666666 444444432221 1222223322221 22456777777777
Q ss_pred ChhHH---HHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhc----------cccccchHHHHHHHHHHHHhhhhhhh-
Q 039811 93 GRAGS---VAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCG----------FHWWNTRVIALLFVMVFVMLPLALFG- 158 (360)
Q Consensus 93 G~~g~---~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~pl~~~~- 158 (360)
|-+|. .+..+.+.+.-||... -+.++.+.-++..+++ .......++...++.=++.+|..+.+
T Consensus 129 GiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p 205 (572)
T KOG2466|consen 129 GIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPP 205 (572)
T ss_pred hhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeeccH
Confidence 76654 4555555555555321 2333433333333222 11223455555566666788888877
Q ss_pred --hhhHHHHHH
Q 039811 159 --LVGYSAISV 167 (360)
Q Consensus 159 --l~~~s~~s~ 167 (360)
+|++=...-
T Consensus 206 ~~ir~lf~~ka 216 (572)
T KOG2466|consen 206 YKIRHLFTWKA 216 (572)
T ss_pred HHhhhHHHHHH
Confidence 777655554
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=55.35 E-value=30 Score=34.88 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=52.8
Q ss_pred CCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh------hhcCCCCHHHHHHH
Q 039811 18 EKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYT------HAGETSTYAGVMRE 90 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~------~~~~~~~y~~l~~~ 90 (360)
.|+..++...+.+..+.+|.+ ++++|.--.+-|.-.... ....+ ... +..+. .+.+..+..|--++
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~--~~~~l---~~~--~~~~~~f~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFF--EWNAL---LSV--LLLGWIFIPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHH--HHHHH---HHH--HhhheEEEEEEEecCeeehhHHHHH
Confidence 567777878888888888765 458887777777542211 11111 111 12222 14567777888888
Q ss_pred HcChhHHHHHHHHHHHHhhhh
Q 039811 91 SFGRAGSVAAQLCVMITNLGC 111 (360)
Q Consensus 91 ~~G~~g~~~~~i~~~~~~~g~ 111 (360)
-||+..+.+..+...++.+--
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~ 137 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLY 137 (585)
T ss_pred HhcccchhhHHHHHHHHHHhh
Confidence 888877777776666655543
No 97
>PHA02764 hypothetical protein; Provisional
Probab=51.26 E-value=2.1e+02 Score=26.74 Aligned_cols=90 Identities=18% Similarity=0.040 Sum_probs=50.2
Q ss_pred CCCCchHHHHH-HHHHHHHhHhHhHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHcC
Q 039811 18 EKRPWVSGAVF-NVATSIIGAGIMSIAATVKVL--GVIPAFVLIVIIAWLTDVSVEILMRYTH-AGETSTYAGVMRESFG 93 (360)
Q Consensus 18 ~~~~s~~~~~~-~l~~~~iG~GiL~lP~~f~~~--G~~~gii~lv~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (360)
-|+.|.+++++ |+.+...|.++ +.|+-+... |.- .+..-++.++++........+.+. .++...-....++++|
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 46778888888 66666666654 555533322 322 222333344444444444444433 2344444556788999
Q ss_pred hhHHHHHHHHHHHHhh
Q 039811 94 RAGSVAAQLCVMITNL 109 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~ 109 (360)
++...+.....+....
T Consensus 89 P~~GFLvG~a~WLtl~ 104 (399)
T PHA02764 89 SKFYTIFGISLWLTYV 104 (399)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9888877766555433
No 98
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=51.01 E-value=2.7e+02 Score=27.93 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhh-hcc-cc---------ccchHHHHHHHHH
Q 039811 80 ETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEW-CGF-HW---------WNTRVIALLFVMV 148 (360)
Q Consensus 80 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~-~~---------~~~~~~~~~~~~~ 148 (360)
......++-..+.||++........++..+..+++-....+......-.+. .+. +| -..+..++..+..
T Consensus 323 ~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s 402 (550)
T KOG1289|consen 323 LGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIIS 402 (550)
T ss_pred CCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHH
Confidence 356788899999999999988988899999988888877776554442221 110 01 1123334433333
Q ss_pred HHHhhhhhhh-hhhHHHHHHH
Q 039811 149 FVMLPLALFG-LVGYSAISVL 168 (360)
Q Consensus 149 ~~~~pl~~~~-l~~~s~~s~~ 168 (360)
.++.-+.+.+ -.+-+.++..
T Consensus 403 ~llgll~L~s~~Af~Alfs~a 423 (550)
T KOG1289|consen 403 ILLGLLILASATAFNALFSAA 423 (550)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 3445555555 6666777753
No 99
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=47.60 E-value=1.7e+02 Score=24.50 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred HHHhHhHhHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHHHHHHHHH
Q 039811 33 SIIGAGIMSIAATVKVL--GVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMI 106 (360)
Q Consensus 33 ~~iG~GiL~lP~~f~~~--G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~ 106 (360)
+-+|.+++..|++...- ++..-.+-.+.++++|.....+ |.-+-++.-|.|...+..+....
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAll------------Y~~~l~k~~g~W~Gi~YG~~~W~ 110 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALL------------YYALLKKFKGPWPGILYGLAWWA 110 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhcccchHHHHHHHHHH
Confidence 34678888888887522 3333333333444444433332 33344445556666555544433
No 100
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=47.31 E-value=1.6e+02 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=14.8
Q ss_pred hhcCCCchhhHhhCCCCCC
Q 039811 258 LLFGESIMSDILVNFDQSS 276 (360)
Q Consensus 258 ~~fG~~~~~~il~n~~~~~ 276 (360)
..||-..++++++|.-++|
T Consensus 38 ~~Ygv~id~~mi~nv~eTn 56 (156)
T PF08019_consen 38 DTYGVVIDYDMIQNVFETN 56 (156)
T ss_pred HHcCCCCCHHHHHHHHHcC
Confidence 3688888888888886666
No 101
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=47.07 E-value=51 Score=28.17 Aligned_cols=65 Identities=8% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCC----------CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039811 293 IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI----------STTGDRIIATVMMVLAVVTSTIAISTNIYGSIS 357 (360)
Q Consensus 293 ~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~----------~~~~~~~~~~~~~~~G~~~~v~g~~~si~~i~~ 357 (360)
+..-.-+.|++.++-+.-++|+...+...++. ..|...+...+...+|++.++.+..-|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444577788888888899999888765541 245567888888899999999988888877654
No 102
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=46.17 E-value=2.9e+02 Score=26.93 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHh-HHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHHHHH-----hhhcCCCCHHHHHH
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIM-SIAATVKVLGVIPAFVLIVIIAWLTDVS-VEILMRY-----THAGETSTYAGVMR 89 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~~~G~~~gii~lv~~~~~~~~s-~~~l~~~-----~~~~~~~~y~~l~~ 89 (360)
|+.-.|...=++..+.+.+|.|-. --||-..+-| .|..+++....+-..+ -.++.|- .+++...+|+.+..
T Consensus 5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nG--GgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~ 82 (439)
T COG0733 5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENG--GGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP 82 (439)
T ss_pred ccchhhHHHHHHHHHHHHhcccccccCCeEeeecC--cchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc
Confidence 344557777788888999998865 6788776554 2333333322222222 2233443 33344556666665
Q ss_pred HHcChhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 039811 90 ESFGRAGSVAAQLCVMITNLGCLIIFFIIIG 120 (360)
Q Consensus 90 ~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~ 120 (360)
+|+++ ..........+..+.-|.+..+
T Consensus 83 ---~~~~~-~~G~~gv~~~~~i~sfYsvI~G 109 (439)
T COG0733 83 ---KKKWE-WIGWFGVLGGFLILSFYSVIGG 109 (439)
T ss_pred ---Cccch-hhhhHHHHHHHHHHHHHHHHHH
Confidence 34333 2233334444555555555555
No 103
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=41.17 E-value=2e+02 Score=27.44 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=39.0
Q ss_pred HHHHHhhcCCCchhhHhhCCCCCCchH----HHHHHHHHHhcCC-----HHHHHHhhhhhhhhHHHHH
Q 039811 253 GLFGYLLFGESIMSDILVNFDQSSGSA----IIFSYTAAIMIPD-----IWYFFQFLGSTSAVCLAFI 311 (360)
Q Consensus 253 g~~gy~~fG~~~~~~il~n~~~~~~~~----i~~~~~ia~~~p~-----~~~i~~l~Ga~~~~~l~fi 311 (360)
-++..+.+|-+.+.+.-...+++.|.. +....+.++++|+ +...++..||.....+..+
T Consensus 90 ~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvqLv 157 (426)
T KOG2592|consen 90 LLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQLV 157 (426)
T ss_pred HHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHHHH
Confidence 345567788888888888888888876 2333455679997 4456666666554444433
No 104
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=35.14 E-value=5.7e+02 Score=27.08 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHhHhH-hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHHcChhHH
Q 039811 22 WVSGAVFNVATSIIGAGI-MSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA---GETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 22 s~~~~~~~l~~~~iG~Gi-L~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~---~~~~~y~~l~~~~~G~~g~ 97 (360)
+...-..-.+-.+.|.=. +=|-|....+|...+.++..+|+..+..|..-+.-.+.. ....+|.-+ .+.+|+-..
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEFG 194 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEFG 194 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCcccc
Confidence 333334444555555433 467888888999999999999999999888887776653 123344433 334454333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhch
Q 039811 98 VAAQLCVMITNLGCLIIFFIIIGSVH 123 (360)
Q Consensus 98 ~~~~i~~~~~~~g~~~~y~i~~~~~l 123 (360)
-.+.++...-.-.+...|+.-.-+.+
T Consensus 195 gAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 195 GAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred ceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 34555544444444555555544433
No 105
>TIGR00909 2A0306 amino acid transporter.
Probab=34.88 E-value=4.1e+02 Score=25.38 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhh
Q 039811 81 TSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVL 127 (360)
Q Consensus 81 ~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~ 127 (360)
.....++.++..|+++..+..+...+..++...+.....+..+...-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 263 TAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred CcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999998888886665543
No 106
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.79 E-value=1.3e+02 Score=26.62 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=48.9
Q ss_pred hhCCCCCCchHHHHHHHHHHhcCCHHHHHHh---------hhhhhhhHHHHHhhhHhhhh--hcCCCC-c--hhhHHHHH
Q 039811 269 LVNFDQSSGSAIIFSYTAAIMIPDIWYFFQF---------LGSTSAVCLAFIFPGVIVLR--DVHGIS-T--TGDRIIAT 334 (360)
Q Consensus 269 l~n~~~~~~~~i~~~~~ia~~~p~~~~i~~l---------~Ga~~~~~l~fi~P~~~~l~--~~~~~~-~--~~~~~~~~ 334 (360)
.++++-++....+.++++|+..+.++-.+.+ -||.++-.+.++= |.- ...++. . ..++|+.|
T Consensus 152 ~D~L~vGnd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLww 227 (262)
T KOG4812|consen 152 IDGLRVGNDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWW 227 (262)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHH
Confidence 3445444444466777777777766654443 4777776666554 111 111111 1 12589999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039811 335 VMMVLAVVTSTIAISTN 351 (360)
Q Consensus 335 ~~~~~G~~~~v~g~~~s 351 (360)
+++++|.+..+-+++.=
T Consensus 228 i~~vlG~ll~lr~~i~Y 244 (262)
T KOG4812|consen 228 IFLVLGLLLFLRGFINY 244 (262)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999999888653
No 107
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=29.74 E-value=1.5e+02 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 039811 236 TAVRISLVLCTAIYFSVGLFGYLLFGESIM 265 (360)
Q Consensus 236 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~ 265 (360)
.-+.+-..++.++|+..|+.-+..+.++.+
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 345556678999999999988877766554
No 108
>PRK10649 hypothetical protein; Provisional
Probab=29.48 E-value=4.1e+02 Score=27.04 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHhhCCCCCCc
Q 039811 245 CTAIYFSVGLFGYLLFGESIMSDILVNFDQSSG 277 (360)
Q Consensus 245 ~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~ 277 (360)
+.....+.++..+..||...+.+++.|.-..+.
T Consensus 77 vl~~~~l~~~~Y~~~yg~~~~~~mi~~v~eTn~ 109 (577)
T PRK10649 77 VLWAASLAALCYYVIYGQEFSQSVLFVMFETNT 109 (577)
T ss_pred HHHHHHHHHHHHHHHhCCccCHHHHHHHHhCCH
Confidence 333344445555677888878888877765553
No 109
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=27.85 E-value=1.3e+02 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=33.1
Q ss_pred HhhcCCCchhhHhhCCCCCCchH----HHHHHHHHHhcCC-----HHHHHHhhhhhhhhHHHHHh
Q 039811 257 YLLFGESIMSDILVNFDQSSGSA----IIFSYTAAIMIPD-----IWYFFQFLGSTSAVCLAFIF 312 (360)
Q Consensus 257 y~~fG~~~~~~il~n~~~~~~~~----i~~~~~ia~~~p~-----~~~i~~l~Ga~~~~~l~fi~ 312 (360)
-...|-+...+.-..++++.|.. ++...+.++++|+ ....++.+|+.....+..++
T Consensus 92 l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIl 156 (429)
T PF03348_consen 92 LLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLIL 156 (429)
T ss_pred HHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455444444455567777765 4455667889999 33346666666655555543
No 110
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.52 E-value=64 Score=20.48 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 039811 236 TAVRISLVLCTAIYFSVGLFGYLLFGESI 264 (360)
Q Consensus 236 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 264 (360)
.+...++.+..++..+.|..-|-+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 35566667777777777777788899753
No 111
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.48 E-value=3e+02 Score=21.54 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=40.3
Q ss_pred CCCCCCCCC-----CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 039811 9 APLLPNSKT-----EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVI-PAFVLIVIIAWLTDVSVEILMRYTHAGETS 82 (360)
Q Consensus 9 ~~l~~~~~~-----~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~-~gii~lv~~~~~~~~s~~~l~~~~~~~~~~ 82 (360)
-+++|+.-+ -++.|.-...+...-+.+-.-++++|.++- .||+ .+...+++..+++.+-.--++.-.++.+-+
T Consensus 4 i~fLp~RLN~ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~ 82 (121)
T PF11990_consen 4 IEFLPDRLNREPVVFRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPE 82 (121)
T ss_pred cccchhhhcCCCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCch
Confidence 455555421 356666666555555555557789999887 6666 455555555444444444333333333333
Q ss_pred C
Q 039811 83 T 83 (360)
Q Consensus 83 ~ 83 (360)
+
T Consensus 83 ~ 83 (121)
T PF11990_consen 83 G 83 (121)
T ss_pred h
Confidence 3
No 112
>PRK11462 putative transporter; Provisional
Probab=26.88 E-value=4.4e+02 Score=25.65 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=10.5
Q ss_pred CHHHHHHHHcChhHHHHH
Q 039811 83 TYAGVMRESFGRAGSVAA 100 (360)
Q Consensus 83 ~y~~l~~~~~G~~g~~~~ 100 (360)
++.+..+..++++-.+..
T Consensus 216 ~~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 216 SMREDLRDIWQNDQWRIV 233 (460)
T ss_pred CHHHHHHHHhCChHHHHH
Confidence 466666677765544333
No 113
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=26.87 E-value=2.1e+02 Score=28.73 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=31.6
Q ss_pred hcCCCchhhHhhCCCCCCchHHHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHH
Q 039811 259 LFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATV 335 (360)
Q Consensus 259 ~fG~~~~~~il~n~~~~~~~~i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~ 335 (360)
.||-..+.++++|.-+.+... -.+.++ .+.+.-..+..++|+++.++.+-++..+++++...+
T Consensus 94 ~ygv~id~~mi~nv~~T~~~E-------------a~~~~~-~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~ 156 (522)
T PRK09598 94 TYKVFLNKSMMGNVLNTNTAE-------------SSGFLS-VKLFIYIVVLGVLPGYIIYKIPLKNSSKKAPFAAIL 156 (522)
T ss_pred hcCCeecHHHHHHHHhCCHHH-------------HHHhcC-HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 477777888888776555321 111111 111112234467888887665433333334443333
No 114
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.49 E-value=3.2e+02 Score=21.11 Aligned_cols=67 Identities=6% Similarity=-0.078 Sum_probs=40.8
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTY 84 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y 84 (360)
-++.|.-.......-+...--++++|.+...++|......+++..+++..-+--.++-.++.+-++|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 4566666666665555555567789987777788877666666555555554444444444444443
No 115
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=24.66 E-value=2.4e+02 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhHhHhHHHHHHHHhCHHH
Q 039811 23 VSGAVFNVATSIIGAGIMSIAATVKVLGVIP 53 (360)
Q Consensus 23 ~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~ 53 (360)
.++-....+.+.+=.|-+++|..++++|++.
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~ 95 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIG 95 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhh
Confidence 4444455555666688999999999999873
No 116
>PRK09950 putative transporter; Provisional
Probab=24.44 E-value=7.2e+02 Score=24.86 Aligned_cols=155 Identities=13% Similarity=0.050 Sum_probs=87.7
Q ss_pred CCCCchHHHHHHHHHHHHhHhHhHH----HHHHHHh---C--------HHHHHHHHHHHHHHHHHHHHHHHH---H---h
Q 039811 18 EKRPWVSGAVFNVATSIIGAGIMSI----AATVKVL---G--------VIPAFVLIVIIAWLTDVSVEILMR---Y---T 76 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~l----P~~f~~~---G--------~~~gii~lv~~~~~~~~s~~~l~~---~---~ 76 (360)
+++-|.++-+..+..+-+|+|++.- |....+. | .-.+.....+=+.+.-++.+.+.- + .
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566778888889999999998753 2221111 1 112233333333344444444332 2 1
Q ss_pred -hhcCCCCHHHHHHHHcChh----HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHH
Q 039811 77 -HAGETSTYAGVMRESFGRA----GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVM 151 (360)
Q Consensus 77 -~~~~~~~y~~l~~~~~G~~----g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (360)
+|.+..+.++..+-.+|++ .+.++|+..++...+....-+=....++..-+++.++.+.-..-+..+ +....++
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~i-i~vi~~i 239 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFV-ILLSGVI 239 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHH-HHHHHHH
Confidence 3445667888888888743 356888888888887777777777777777777776644211122222 2222223
Q ss_pred hhhhh----hh-hhhHHHHHHHHHHHH
Q 039811 152 LPLAL----FG-LVGYSAISVLLAVMF 173 (360)
Q Consensus 152 ~pl~~----~~-l~~~s~~s~~~~~~~ 173 (360)
.-++. .| .|++|-..+.++...
T Consensus 240 f~~S~~~Gl~kGIk~LS~~N~~la~~l 266 (506)
T PRK09950 240 FCLSSYIGIDNGLQRLSKMVGWGAFLF 266 (506)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333 23 888888877544433
No 117
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=24.35 E-value=2.7e+02 Score=20.80 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=23.1
Q ss_pred hhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039811 303 TSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNI 352 (360)
Q Consensus 303 ~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~v~g~~~si 352 (360)
+++.++.+.+..+......+++..+.++...-.+....++..+++.-.+.
T Consensus 13 ~~~~Pll~Y~~~~~~~~~i~~~~~k~n~~i~~~l~~i~I~~~IlS~~~Sf 62 (95)
T PF06836_consen 13 IFSSPLLFYFSYLSFFSFIKNKPPKFNNKIVKYLAIIAIISFILSFFFSF 62 (95)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 33444444333333233334434444444444455666666666655554
No 118
>CHL00020 psbN photosystem II protein N
Probab=24.19 E-value=54 Score=20.51 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 039811 237 AVRISLVLCTAIYFSVGLFGYLLFGESI 264 (360)
Q Consensus 237 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 264 (360)
+...++.+..++..+.|..-|-+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4455666667777777777778898753
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=23.38 E-value=86 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 039811 238 VRISLVLCTAIYFSVGLFGYLLFGESI 264 (360)
Q Consensus 238 ~~~a~~~~~~~y~~~g~~gy~~fG~~~ 264 (360)
...+..+..++-.+.|..-|-+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345556666667777777788898643
No 120
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.75 E-value=2.5e+02 Score=22.76 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039811 325 STTGDRIIATVMMVLAVVTSTIAISTNIYG 354 (360)
Q Consensus 325 ~~~~~~~~~~~~~~~G~~~~v~g~~~si~~ 354 (360)
.++..+..++.+-.+++++.+.|.+...+.
T Consensus 36 ~k~~~k~~H~~L~~la~~~~~~Gl~av~~~ 65 (143)
T cd08763 36 TKRSTKILHGLLHIMALVISLVGLVAVFDY 65 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999887654
No 121
>CHL00058 petD cytochrome b6/f complex subunit IV
Probab=20.53 E-value=5e+02 Score=21.51 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=23.1
Q ss_pred hcCC-HHHHHHhhhhhhhhHHHHHhhhHhhhhhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 039811 289 MIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTI 346 (360)
Q Consensus 289 ~~p~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~v~ 346 (360)
.+|+ ++.++...++. ...+.+| .++-+ .+. +...+|-.+..+.+++++..+.
T Consensus 90 ~iP~Kl~Gv~~m~~~~---~~L~~lP-~l~~~-~~~-~~~~~rp~a~~~f~~~~~~~~~ 142 (160)
T CHL00058 90 TVPNKLLGVLLMASVP---AGLLTVP-FLENV-NKF-QNPFRRPVATTVFLIGTAVALW 142 (160)
T ss_pred hcccchhHHHHHHHHH---HHHHHHH-HHhcc-ccc-cccccccHHHHHHHHHHHHHHH
Confidence 3554 55555555544 3445666 22221 111 1222233455555665555444
Done!