Query 039811
Match_columns 360
No_of_seqs 121 out of 1195
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 23:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2.2E-12 7.5E-17 124.2 30.8 239 17-262 6-252 (445)
2 3gia_A Uncharacterized protein 99.3 3.9E-09 1.3E-13 101.3 27.8 236 17-261 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.1 1.3E-07 4.4E-12 92.4 31.1 239 16-262 8-262 (511)
4 2jln_A MHP1; hydantoin, transp 98.5 0.00014 4.9E-09 70.6 27.2 152 11-167 17-172 (501)
5 3dh4_A Sodium/glucose cotransp 96.1 1.1 3.7E-05 43.5 27.9 88 17-105 18-106 (530)
6 2xq2_A Sodium/glucose cotransp 88.5 20 0.00067 35.1 26.8 87 18-105 48-135 (593)
7 4ain_A Glycine betaine transpo 60.1 25 0.00084 33.9 7.8 119 13-132 88-230 (539)
8 2wsw_A BCCT family betaine/car 55.0 1.5E+02 0.005 28.3 12.4 156 17-174 87-275 (509)
9 2ks1_B Epidermal growth factor 14.6 2E+02 0.0067 17.3 3.3 26 297-323 15-40 (44)
10 2l2t_A Receptor tyrosine-prote 11.5 2.8E+02 0.0096 16.6 3.9 27 295-322 12-38 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.59 E-value=2.2e-12 Score=124.18 Aligned_cols=239 Identities=10% Similarity=0.054 Sum_probs=154.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 95 (360)
++|+.+.++.....+++++|+|++.+|....+.|.. +++..++.++........+.|...+ ++.....+..++.+||+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 84 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF 84 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence 457789999999999999999999999999889974 7788888888888888888887665 45568889999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 039811 96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVA 175 (360)
Q Consensus 96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~ 175 (360)
..++......+........+....++.+...++... .++ ....+. +...++..-+.+...|....+..+.....++
T Consensus 85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (445)
T 3l1l_A 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPW--VLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-SHH--HHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-ccH--HHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 999998888887777777777777776655544321 111 111111 1111111122222255555554432222222
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccc--Cccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHHH
Q 039811 176 ICSVMAIYAVGEGKSKSPKLLPQL--DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTAI 248 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~~ 248 (360)
..++..+...... +.....+.. ....++.++..++....++|.+... .+|+|||+ +.+|++..+..++.++
T Consensus 161 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~ 238 (445)
T 3l1l_A 161 PIVGIAVFGWFWF--RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_dssp HHHHHHHTTSTTC--CCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 2221111111111 111111111 1112345677888899999998887 88999997 7899999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 039811 249 YFSVGLFGYLLFGE 262 (360)
Q Consensus 249 y~~~g~~gy~~fG~ 262 (360)
|...........+.
T Consensus 239 y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 239 YVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcCCH
Confidence 99988877776654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.26 E-value=3.9e-09 Score=101.32 Aligned_cols=236 Identities=12% Similarity=0.131 Sum_probs=141.6
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcCh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSIAA-TVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGR 94 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 94 (360)
++|+.+.++.....+++++|+|++..|. +..++|- ..++..++.+++.......+.|.+.+ ++.....+..++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 4678899999999999999999998764 4556676 57777888888888888888887664 4556788999999998
Q ss_pred h--HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 039811 95 A--GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVM 172 (360)
Q Consensus 95 ~--g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~ 172 (360)
+ +..+ .....+........+....++.+.+.++.. +.++ ... ...+...++..-+.+...|....+..++...
T Consensus 83 ~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~ 157 (444)
T 3gia_A 83 NIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAP-INTF--NIA-ITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157 (444)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCHH--HHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchH--HHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6 3333 344444444455566666666555443221 1111 111 1111111111112221244444443322221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHH
Q 039811 173 FVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTA 247 (360)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~ 247 (360)
-++..++..+......+. .+..|.. .+.++.+++.++....++|.+... .+|+|||+ +.+|++..+..++.+
T Consensus 158 ~i~~~~~~ii~~~~~~~~--~~~~~~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~ 234 (444)
T 3gia_A 158 KLLILGLFIFAGLITIHP--SYVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMF 234 (444)
T ss_dssp HHHHHHHHHHHHHHHCCG--GGTSCCC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCh--hhcCCCC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHH
Confidence 122111111111211111 1122211 123445677788888899998776 88999998 589999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 039811 248 IYFSVGLFGYLLFG 261 (360)
Q Consensus 248 ~y~~~g~~gy~~fG 261 (360)
+|...........+
T Consensus 235 ~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 235 VYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCC
Confidence 99988776655544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.12 E-value=1.3e-07 Score=92.40 Aligned_cols=239 Identities=10% Similarity=0.022 Sum_probs=128.8
Q ss_pred CCCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHhh---hcCCCCHHHHHHHH
Q 039811 16 KTEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLT-DVSVEILMRYTH---AGETSTYAGVMRES 91 (360)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~-~~s~~~l~~~~~---~~~~~~y~~l~~~~ 91 (360)
+.+|+.+.++.+...++.++| +..+|. ..+.|.. .++..++.+.+. ......+.|.+. .+ .....+.+++.
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~ 82 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNT 82 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhh
Confidence 456788999999999999986 667775 4667754 333333333332 235666777654 45 77888999999
Q ss_pred cChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhh--HhhhccccccchHHHHHHHHHHHHhhhhhh--h-hhhHHHHH
Q 039811 92 FGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVL--QEWCGFHWWNTRVIALLFVMVFVMLPLALF--G-LVGYSAIS 166 (360)
Q Consensus 92 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~--~-l~~~s~~s 166 (360)
+||+.+++......+.......++....++.+...+ ++..+.+| ....+. +...++..-+.+. | ...++.+.
T Consensus 83 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~ 159 (511)
T 4djk_A 83 LGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPI--TKTIAA-LIILWALALTQFGGTKYTARIAKVG 159 (511)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSS--HHHHHH-HHHHHHHHHHHHTCSSSHHHHTHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcH--HHHHHH-HHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999998888877777776666666666666554331 22211222 122111 1111122222222 2 23333222
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCCC-CCCCcccCccccccccccchhhhhhhhccccc----cccccCCC-chHHHHH
Q 039811 167 VLLAVMF-VAICSVMAIYAVGEGKSKS-PKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVR 239 (360)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~ 239 (360)
.....+. +++.++..+.....++... +...+...+.....+.+.++...+++|.+... .+|+|||+ +.+|++.
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 160 FFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp HHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 1111111 1111111122222221110 00001111111112344567778899998877 88999998 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 039811 240 ISLVLCTAIYFSVGLFGYLLFGE 262 (360)
Q Consensus 240 ~a~~~~~~~y~~~g~~gy~~fG~ 262 (360)
.+..++.++|++..+......++
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 240 LLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHeecCH
Confidence 99999999999988877766654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.46 E-value=0.00014 Score=70.64 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhHhHhHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 039811 11 LLPNSKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKV-LGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMR 89 (360)
Q Consensus 11 l~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~-~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~ 89 (360)
+.+-++++|+.+.++-+..-.+..++.+...+...+.. .++..+++.+++..++...-..+......+.+.. +.++.|
T Consensus 17 i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R 95 (501)
T 2jln_A 17 NAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAAR 95 (501)
T ss_dssp TSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTT
T ss_pred CCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhH
Confidence 33334456667888887777777777777777666554 2456666666666555555555555555565444 999999
Q ss_pred HHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhh---hhhHHHHH
Q 039811 90 ESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFG---LVGYSAIS 166 (360)
Q Consensus 90 ~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---l~~~s~~s 166 (360)
..||++|..+..+...+...|-........++.+..++...++.+ ... +..++..++.++..+.. ++.+..+.
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~---~~~-v~~~i~~~l~~~~~~~G~~~i~~~~~~~ 171 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFT---NLP-LWIVIFGAIQVVTTFYGITFIRWMNVFA 171 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHH-HHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999999999999888888888888887766544321 122 23333444666666655 55555555
Q ss_pred H
Q 039811 167 V 167 (360)
Q Consensus 167 ~ 167 (360)
.
T Consensus 172 ~ 172 (501)
T 2jln_A 172 S 172 (501)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.12 E-value=1.1 Score=43.48 Aligned_cols=88 Identities=9% Similarity=-0.023 Sum_probs=58.4
Q ss_pred CCCCCchHHHHHHHHHHHHhHh-HhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChh
Q 039811 17 TEKRPWVSGAVFNVATSIIGAG-IMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRA 95 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (360)
..|+.+++...+.+..+.+++. .+++|-...+.|+....... ..+.........+..-.++.+..|.+|.-++-||++
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-MSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKK 96 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHH-HHHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcH
Confidence 3678889999999888887765 45888888788864221111 111111122333444456778999999999999998
Q ss_pred HHHHHHHHHH
Q 039811 96 GSVAAQLCVM 105 (360)
Q Consensus 96 g~~~~~i~~~ 105 (360)
.+.+..+...
T Consensus 97 ~~~~~a~~~l 106 (530)
T 3dh4_A 97 LKTILAVFWI 106 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776544
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=88.47 E-value=20 Score=35.09 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=53.2
Q ss_pred CCCCchHHHHHHHHHHHHhHhH-hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhH
Q 039811 18 EKRPWVSGAVFNVATSIIGAGI-MSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAG 96 (360)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g 96 (360)
.|+.+++...+.+..+.+++.. +++|-...+.|+....... ..+.........+..-.++.+..|.+|.-++=|||+.
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~ 126 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-MSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKL 126 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHH-HHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCch
Confidence 5677888888888776666554 5888777777864221111 0111111122334444467789999999999999988
Q ss_pred HHHHHHHHH
Q 039811 97 SVAAQLCVM 105 (360)
Q Consensus 97 ~~~~~i~~~ 105 (360)
+.+..+...
T Consensus 127 ~~~~ai~~l 135 (593)
T 2xq2_A 127 KTILAVFWI 135 (593)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877765544
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=60.12 E-value=25 Score=33.86 Aligned_cols=119 Identities=11% Similarity=-0.049 Sum_probs=67.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhHhHhHH----HHHHHHh---C-----HHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 039811 13 PNSKTEKRPWVSGAVFNVATSIIGAGIMSI----AATVKVL---G-----VIPAFVLIVIIAWLTDVSVEILMRYTH--- 77 (360)
Q Consensus 13 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~l----P~~f~~~---G-----~~~gii~lv~~~~~~~~s~~~l~~~~~--- 77 (360)
.+++++++.|.++-+..+..+-+|.|++.- |....+. | .-.+.....+=+.+.-++.|.+.-.+-
T Consensus 88 G~~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~ 167 (539)
T 4ain_A 88 GRIDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYS 167 (539)
T ss_dssp SCTTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 344556677889999999999999999843 2222111 1 112333333333444455554443221
Q ss_pred ---hcC-----CCCHHHHHHH-HcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhc
Q 039811 78 ---AGE-----TSTYAGVMRE-SFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCG 132 (360)
Q Consensus 78 ---~~~-----~~~y~~l~~~-~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 132 (360)
+.. ..=|+=++++ .-|+.|+ ++|++-++...+....-+=+...++..-+++.++
T Consensus 168 ~yrk~~pl~iss~l~PllG~r~~~G~~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfG 230 (539)
T 4ain_A 168 TFRVGRKQLLSSAFVPLIGEKGAEGWLGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANI 230 (539)
T ss_dssp CCCTCCCSCTTGGGHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCCCcHHHHhHhhcCCCccCCcchh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 111 2236677777 6777655 6777766666666666666666666665566655
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=54.99 E-value=1.5e+02 Score=28.30 Aligned_cols=156 Identities=7% Similarity=-0.056 Sum_probs=78.0
Q ss_pred CCCCCchHHHHHHHHHHHHhHhHhHH----HHHHHHh-------CH----HHHHHHHHHHHHHHHHHHHHHHHH-----h
Q 039811 17 TEKRPWVSGAVFNVATSIIGAGIMSI----AATVKVL-------GV----IPAFVLIVIIAWLTDVSVEILMRY-----T 76 (360)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~~f~~~-------G~----~~gii~lv~~~~~~~~s~~~l~~~-----~ 76 (360)
++++.|.++-+..+..+-+|.|.+.- |-...+. |- -.+.....+=+.+.-++.|.+.-. .
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 45567888888899999999998874 2222211 11 112222222222333333333221 2
Q ss_pred h-hc-C-----CCCHHHHH-HHHcChhHHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHH
Q 039811 77 H-AG-E-----TSTYAGVM-RESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMV 148 (360)
Q Consensus 77 ~-~~-~-----~~~y~~l~-~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (360)
. |. + ..=|+-++ ++.-|+.|+ ++|++-++........-+=+...++..-+++.++.+.-..-+..+ +...
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~~G~-~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~i-i~vi 244 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGLFGT-VVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAII-ISCW 244 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHH-HHHH
Confidence 1 21 1 22467778 788887776 556655555554444445555555555556655533211112222 2222
Q ss_pred HHHhhhhhh----h-hhhHHHHHHHHHHHHH
Q 039811 149 FVMLPLALF----G-LVGYSAISVLLAVMFV 174 (360)
Q Consensus 149 ~~~~pl~~~----~-l~~~s~~s~~~~~~~~ 174 (360)
.++.-.+-. | .|++|-+.+.++...+
T Consensus 245 t~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll 275 (509)
T 2wsw_A 245 ILLNAICVAFGLQKGVKIASDVRTYLSFLML 275 (509)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222223332 3 8888887776554433
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.63 E-value=2e+02 Score=17.27 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=12.6
Q ss_pred HHhhhhhhhhHHHHHhhhHhhhhhcCC
Q 039811 297 FQFLGSTSAVCLAFIFPGVIVLRDVHG 323 (360)
Q Consensus 297 ~~l~Ga~~~~~l~fi~P~~~~l~~~~~ 323 (360)
.+.+|++....+ ..+=..+++|.+++
T Consensus 15 ~gVVgGv~~~~i-i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 15 TGMVGALLLLLV-VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTTC
T ss_pred eehhHHHHHHHH-HHHHHHHHhhhhHh
Confidence 455565555332 22334566664443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.50 E-value=2.8e+02 Score=16.61 Aligned_cols=27 Identities=7% Similarity=0.029 Sum_probs=13.6
Q ss_pred HHHHhhhhhhhhHHHHHhhhHhhhhhcC
Q 039811 295 YFFQFLGSTSAVCLAFIFPGVIVLRDVH 322 (360)
Q Consensus 295 ~i~~l~Ga~~~~~l~fi~P~~~~l~~~~ 322 (360)
...+.+|++....+ ..+-..+++|.++
T Consensus 12 IA~gVVgGv~~v~i-i~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVI-VGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHH-HHHHHHHHhhhhh
Confidence 34566666665333 2233455666443
Done!