Query 039811
Match_columns 360
No_of_seqs 121 out of 1195
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 23:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039811.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039811hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 11.4 4.2E+02 0.031 22.4 27.8 105 19-123 3-112 (509)
2 d1x41a1 a.4.1.1 (A:8-54) Trans 9.1 1.6E+02 0.012 16.1 3.4 27 71-97 11-37 (47)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.9 2.1E+02 0.016 23.0 4.6 54 22-75 378-433 (447)
4 d1ofcx1 a.4.1.3 (X:799-850) SA 5.4 1.1E+02 0.0079 17.7 1.1 26 71-96 9-34 (52)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 5.0 2.3E+02 0.017 13.9 3.1 22 35-58 6-27 (32)
6 d1v54d_ f.23.1.1 (D:) Mitochon 3.7 5.8E+02 0.042 17.7 4.4 47 216-262 56-103 (144)
7 d1i1ga1 a.4.5.32 (A:2-61) LprA 3.1 4.7E+02 0.034 14.6 2.9 21 72-92 8-28 (60)
8 d1guua_ a.4.1.3 (A:) c-Myb, DN 2.6 4.3E+02 0.031 14.2 2.1 27 71-97 11-37 (50)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1.1E+03 0.082 17.5 5.6 36 27-65 7-42 (248)
10 d2cyya1 a.4.5.32 (A:5-64) Puta 2.3 5.9E+02 0.043 14.1 2.9 21 72-92 8-28 (60)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=11.41 E-value=4.2e+02 Score=22.44 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCchHHHHHHHHHHHHhHhHh-HHHHHHH-HhC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcC
Q 039811 19 KRPWVSGAVFNVATSIIGAGIM-SIAATVK-VLG---VIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFG 93 (360)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL-~lP~~f~-~~G---~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G 93 (360)
+=.|..+-++..++..+|.|-+ -.||-.. ++| +++=.+++++++.=..+--..+.+-.++.....+..+.....+
T Consensus 3 ~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~ 82 (509)
T d2a65a1 3 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWR 82 (509)
T ss_dssp CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcc
Confidence 3457888899999999999876 5899875 555 2233334444444444444456666667778889999888876
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhhhch
Q 039811 94 RAGSVAAQLCVMITNLGCLIIFFIIIGSVH 123 (360)
Q Consensus 94 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l 123 (360)
++....+.......++..++-|.+..+-.+
T Consensus 83 ~~~~~giG~~~~~~~~~i~~yy~vi~~w~l 112 (509)
T d2a65a1 83 NRFAKILGVFGLWIPLVVAIYYVYIESWTL 112 (509)
T ss_dssp SHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544445555666666666666766666433
No 2
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=1.6e+02 Score=16.07 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=20.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHcChhHH
Q 039811 71 ILMRYTHAGETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 71 ~l~~~~~~~~~~~y~~l~~~~~G~~g~ 97 (360)
.|.++..+++..++..+++.+-||..+
T Consensus 11 ~L~~~v~~~G~~nW~~Ia~~~~~Rt~~ 37 (47)
T d1x41a1 11 ALLEAVMDCGFGNWQDVANQMCTKTKE 37 (47)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCccHHHHHHHcCCCCHH
Confidence 566777778888999999998777543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.93 E-value=2.1e+02 Score=22.98 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHhH--hHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039811 22 WVSGAVFNVATSIIGA--GIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRY 75 (360)
Q Consensus 22 s~~~~~~~l~~~~iG~--GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~ 75 (360)
+...+..+......|. |.+..++.....|+-.....+..+.++.......+.+-
T Consensus 378 g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445554444332 23334455566787655555555555555444444443
No 4
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.35 E-value=1.1e+02 Score=17.65 Aligned_cols=26 Identities=4% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHcChhH
Q 039811 71 ILMRYTHAGETSTYAGVMRESFGRAG 96 (360)
Q Consensus 71 ~l~~~~~~~~~~~y~~l~~~~~G~~g 96 (360)
.++++..+.+..+|..++...-||.-
T Consensus 9 ~Fi~a~ekyGR~d~~~Ia~e~~~Kt~ 34 (52)
T d1ofcx1 9 QFIKANEKYGRDDIDNIAKDVEGKTP 34 (52)
T ss_dssp HHHHHHHHHCTTCHHHHTTSSTTCCH
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCH
Confidence 46777788888899999988877643
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.95 E-value=2.3e+02 Score=13.86 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=11.7
Q ss_pred HhHhHhHHHHHHHHhCHHHHHHHH
Q 039811 35 IGAGIMSIAATVKVLGVIPAFVLI 58 (360)
Q Consensus 35 iG~GiL~lP~~f~~~G~~~gii~l 58 (360)
.-+.+|+...-| .||..|.+++
T Consensus 6 l~aa~lsfglif--vgwglgalll 27 (32)
T d2e74f1 6 LYAALLSFGLIF--VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHhhHHH--HHhHHHHHHh
Confidence 334455544444 5666666654
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.73 E-value=5.8e+02 Score=17.68 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=26.8
Q ss_pred hhhhccccccccccCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039811 216 VTAFTFYFNGFELDKPS-DMITAVRISLVLCTAIYFSVGLFGYLLFGE 262 (360)
Q Consensus 216 ~faf~~~~~~~~m~~~~-~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 262 (360)
+|-..++..+.||.+|+ ..+.++..++..+.+-..++...-..++++
T Consensus 56 lYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 56 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333344477888888 666666655555555444444544556664
No 7
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.10 E-value=4.7e+02 Score=14.64 Aligned_cols=21 Identities=0% Similarity=0.151 Sum_probs=14.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHc
Q 039811 72 LMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 72 l~~~~~~~~~~~y~~l~~~~~ 92 (360)
++++-......+|.++++++-
T Consensus 8 Il~~L~~n~r~s~~~lA~~~g 28 (60)
T d1i1ga1 8 ILEILEKDARTPFTEIAKKLG 28 (60)
T ss_dssp HHHHHHHCTTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHC
Confidence 344445566778888888764
No 8
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.59 E-value=4.3e+02 Score=14.21 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=18.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHcChhHH
Q 039811 71 ILMRYTHAGETSTYAGVMRESFGRAGS 97 (360)
Q Consensus 71 ~l~~~~~~~~~~~y~~l~~~~~G~~g~ 97 (360)
.|.+...+++..++.++++..=||...
T Consensus 11 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~ 37 (50)
T d1guua_ 11 KLKKLVEQNGTDDWKVIANYLPNRTDV 37 (50)
T ss_dssp HHHHHHHHHCSSCHHHHHHTSTTCCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHH
Confidence 455566666777888888876666443
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.37 E-value=1.1e+03 Score=17.52 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHH
Q 039811 27 VFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLT 65 (360)
Q Consensus 27 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~ 65 (360)
++.+++... ....|..+++.-|..++++++...++.
T Consensus 7 ll~l~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 7 VLGLLGLLV---GYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHHHHHH---HHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 344444443 567788999999988877776666554
No 10
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.33 E-value=5.9e+02 Score=14.05 Aligned_cols=21 Identities=0% Similarity=0.067 Sum_probs=14.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHc
Q 039811 72 LMRYTHAGETSTYAGVMRESF 92 (360)
Q Consensus 72 l~~~~~~~~~~~y~~l~~~~~ 92 (360)
+++.-.+....++.+++++.-
T Consensus 8 Il~~L~~n~r~s~~eiA~~l~ 28 (60)
T d2cyya1 8 IIKILQNDGKAPLREISKITG 28 (60)
T ss_dssp HHHHHHHCTTCCHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHC
Confidence 344444556778888888774
Done!