BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039814
         (454 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Glutaconyl-Coa
 pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Apoprotein
 pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Crotonyl-Coa
 pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Crotonyl-Coa
 pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Crotonyl-Coa
 pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Crotonyl-Coa
 pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Glutaryl-Coa
 pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
           Symbiosum Co-Crystallized With Glutaryl-Coa
          Length = 588

 Score = 33.5 bits (75), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 107 EQQKELKTQCNAYEADRSRPLDINI---EVLDEQARFEAAQRLKIGIYFATWWALNVVFN 163
           E ++E+K   +       + LD  I   E L+E+ +  A QR+   I   TW  LN +FN
Sbjct: 26  ENEQEIKAVESDIHESIKKALDAGITSEEKLNERGQLSAMQRINALIDPGTWCPLNSLFN 85

Query: 164 IYNKK 168
             N K
Sbjct: 86  PENNK 90


>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
 pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
          Length = 528

 Score = 32.7 bits (73), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 75  LPIIQNSIFNNKFSSEKPLHISSTQNLTFSPKEQQKELKTQCNAYEADRSRPLDINIEV- 133
           L I+    +N K  ++KP+     + ++F P +Q      + N Y A      D  I V 
Sbjct: 159 LGIVSADKYNAKTYAQKPIGAGPYRLVSFQPGQQ---XIVEANPYYAGNKNDFDKLIFVF 215

Query: 134 LDEQARFEAAQRLKIGI 150
           LDE + F AAQ  ++G+
Sbjct: 216 LDEDSAFAAAQSGQLGV 232


>pdb|2D3V|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor A5
           (Lilra5LIR9ILT11)
          Length = 196

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 160 VVFNIYNKKVLNAFPYPWLTS--TLSLACGSLM 190
           VV   YNK  L+A P P +TS   ++L CGS +
Sbjct: 93  VVTGFYNKPTLSALPSPVVTSGENVTLQCGSRL 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,803,413
Number of Sequences: 62578
Number of extensions: 422505
Number of successful extensions: 1057
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 3
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)