Query 039814
Match_columns 454
No_of_seqs 326 out of 1920
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 3.3E-06 1.1E-10 73.4 7.3 59 381-439 47-106 (137)
2 3b5d_A Multidrug transporter E 98.1 1.9E-05 6.4E-10 66.0 10.5 71 214-284 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.0 1.1E-05 3.8E-10 70.0 7.1 69 214-282 34-103 (137)
4 3b5d_A Multidrug transporter E 97.9 7.7E-05 2.6E-09 62.2 10.2 56 383-438 49-105 (110)
5 3l1l_A Arginine/agmatine antip 24.8 1.5E+02 0.005 29.0 7.3 26 418-443 408-433 (445)
6 2l2t_A Receptor tyrosine-prote 18.4 95 0.0032 20.9 2.9 19 423-441 22-40 (44)
7 2b2h_A AMT-1, ammonium transpo 16.2 7.8E+02 0.027 24.3 14.1 85 247-335 231-316 (399)
8 2ks1_B Epidermal growth factor 15.0 1.3E+02 0.0044 20.2 2.9 16 425-440 25-40 (44)
9 1u7g_A Probable ammonium trans 13.7 8.9E+02 0.031 23.7 13.8 87 248-336 243-330 (385)
10 1bku_A Calcitonin; hormone, ca 8.8 56 0.0019 20.6 -0.5 12 24-35 14-25 (33)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=3.3e-06 Score=73.35 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=41.1
Q ss_pred HHHHhhhhchHHHHHH-HHHHHHHHHHHHHHHhCCCCchhhHHhHHHHHHHHHHHHhhhc
Q 039814 381 SYMSLDQISPLTFSIG-NTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFIYSQFLV 439 (454)
Q Consensus 381 ~f~~l~~isp~t~sv~-~~lkpV~~ills~l~fgE~lt~~~ilG~~Lil~Gv~ly~~~k~ 439 (454)
...+++++++..+... ..+.|++++++|+++|||++++.+++|++++++|+++.+..++
T Consensus 47 ~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456899999977666 8999999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.11 E-value=1.9e-05 Score=65.97 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHHhHhhhheeeeecC
Q 039814 214 FPVAVAHTIGHVAATVSMSKVAVSFTHII-KSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTE 284 (454)
Q Consensus 214 l~~gll~~l~~~~~~~al~~vs~s~a~ii-~s~~Pifv~lls~l~l~er~s~~~~lsl~li~~Gv~l~~~~~ 284 (454)
+...+++.++.++...++++.+.+.+..+ .++.|+++++++++++||++++.+++|++++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44444567778888899999999999888 899999999999999999999999999999999998775443
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.99 E-value=1.1e-05 Score=70.01 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHHhHhhhheeeee
Q 039814 214 FPVAVAHTIGHVAATVSMSKVAVSFTHII-KSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAV 282 (454)
Q Consensus 214 l~~gll~~l~~~~~~~al~~vs~s~a~ii-~s~~Pifv~lls~l~l~er~s~~~~lsl~li~~Gv~l~~~ 282 (454)
+...+++.++.++.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|+.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33344567788889999999999999888 8999999999999999999999999999999999987754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.89 E-value=7.7e-05 Score=62.21 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=49.9
Q ss_pred HHhhhhchHHHHHH-HHHHHHHHHHHHHHHhCCCCchhhHHhHHHHHHHHHHHHhhh
Q 039814 383 MSLDQISPLTFSIG-NTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFIYSQFL 438 (454)
Q Consensus 383 ~~l~~isp~t~sv~-~~lkpV~~ills~l~fgE~lt~~~ilG~~Lil~Gv~ly~~~k 438 (454)
.++++.+...+... ..+.|+.+.++|+++|||++++.+++|++++++|+++.+..+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46788888877555 899999999999999999999999999999999999987653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.77 E-value=1.5e+02 Score=29.03 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=18.3
Q ss_pred hhhHHhHHHHHHHHHHHHhhhccccc
Q 039814 418 PVNALGAAIAILGTFIYSQFLVQDLG 443 (454)
Q Consensus 418 ~~~ilG~~Lil~Gv~ly~~~k~~~~~ 443 (454)
...+.|.++++.|+.+|-..++++++
T Consensus 408 ~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 408 KEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34566888889999888776654443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.40 E-value=95 Score=20.90 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHhhhccc
Q 039814 423 GAAIAILGTFIYSQFLVQD 441 (454)
Q Consensus 423 G~~Lil~Gv~ly~~~k~~~ 441 (454)
+.+++..++++|-+.++++
T Consensus 22 ~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 3345555556666655443
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.21 E-value=7.8e+02 Score=24.27 Aligned_cols=85 Identities=7% Similarity=-0.049 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcccCChhhHHHHHhHhhhheeeeecCCcchHHHHHHHHHHH-HHHHHHHHHHHhccCCCCCchHHHHH
Q 039814 247 PAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISN-LAFVFRNIFSKKGMKGKSVGGMNYYA 325 (454)
Q Consensus 247 Pifv~lls~l~l~er~s~~~~lsl~li~~Gv~l~~~~~~~~~~~G~ll~lls~-l~~A~~~Vl~kk~~~~~~~~~l~~~~ 325 (454)
-+..++++++. +|++......-.+ .++|++....+.-..+..++..+++. +|+... .+.+|+--+++++....=.
T Consensus 231 ~l~~~~~~~~~--gk~~~~~~~nG~l-AGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~kl~iDD~l~a~~vHg 306 (399)
T 2b2h_A 231 GFVWMVIGWIK--GKPGSLGIVSGAI-AGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIKKKIDESLDAWAIHG 306 (399)
T ss_dssp HHHHHHHHHHH--SCCCHHHHHHHHH-HHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCCTTCHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHH-HhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCceeccc
Confidence 33444555554 6666543332221 12233322222222222333333333 333333 4445543355666666555
Q ss_pred HHHHHHHHHH
Q 039814 326 CLSMMSLLIL 335 (454)
Q Consensus 326 ~~~~~~~lll 335 (454)
...+.+.+..
T Consensus 307 v~Gi~G~l~~ 316 (399)
T 2b2h_A 307 IGGLWGSVAV 316 (399)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 5555555443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.95 E-value=1.3e+02 Score=20.18 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhhcc
Q 039814 425 AIAILGTFIYSQFLVQ 440 (454)
Q Consensus 425 ~Lil~Gv~ly~~~k~~ 440 (454)
+++.+++++|-+.+++
T Consensus 25 ~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhhhHh
Confidence 3444555556555443
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=13.67 E-value=8.9e+02 Score=23.70 Aligned_cols=87 Identities=2% Similarity=-0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcccCChhhHHHHHhHhhhheeeeecCCcchHHHHHHHHHHH-HHHHHHHHHHHhccCCCCCchHHHHHH
Q 039814 248 AFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISN-LAFVFRNIFSKKGMKGKSVGGMNYYAC 326 (454)
Q Consensus 248 ifv~lls~l~l~er~s~~~~lsl~li~~Gv~l~~~~~~~~~~~G~ll~lls~-l~~A~~~Vl~kk~~~~~~~~~l~~~~~ 326 (454)
+..++++++ .++|++......-.++ ++|++....+.-..+..++..+++. +|+-....+.+|+--+++++....=..
T Consensus 243 l~~~~~~~~-~~gk~~~~~~~nG~lA-GLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv 320 (385)
T 1u7g_A 243 LGWIFGEWA-LRGLPSLLGACSGAIA-GLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGV 320 (385)
T ss_dssp HHHHHHHHH-HHSSCCHHHHHHHHHH-HHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHH-hhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeeccc
Confidence 334444544 4556665433322221 2233322223222233334444443 334344434445433455565555455
Q ss_pred HHHHHHHHHH
Q 039814 327 LSMMSLLILT 336 (454)
Q Consensus 327 ~~~~~~lll~ 336 (454)
..+.+.+...
T Consensus 321 ~Gi~G~l~~g 330 (385)
T 1u7g_A 321 CGIVGCIMTG 330 (385)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 5555555433
No 10
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=8.79 E-value=56 Score=20.63 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=8.7
Q ss_pred cccccCCCCCch
Q 039814 24 QNLSNSLNYPPT 35 (454)
Q Consensus 24 ~~~~~~~~~~~~ 35 (454)
|+|+++-|||||
T Consensus 14 ~~L~rs~~f~pT 25 (33)
T 1bku_A 14 QELHKLQTYPRT 25 (33)
T ss_dssp HHHHHHTTCSSS
T ss_pred HHHHhccccCCC
Confidence 566677788887
Done!