Query 039814
Match_columns 454
No_of_seqs 326 out of 1920
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 23:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisa1 d.129.1.1 (A:1-92) TAT 10.5 39 0.0029 24.4 1.0 26 13-38 1-26 (92)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 9.9 1.1E+02 0.0084 16.4 2.5 19 290-308 3-21 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.8 5.2E+02 0.038 21.5 6.6 54 213-270 5-58 (248)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 5.6 8.5E+02 0.062 21.3 18.5 85 248-334 240-326 (383)
5 d2foka2 a.4.5.12 (A:144-286) R 4.1 71 0.0051 24.7 -0.6 11 30-40 14-24 (143)
6 d1gska3 b.6.1.3 (A:357-510) Sp 3.5 92 0.0067 24.3 -0.5 19 1-19 57-75 (154)
7 d1kkea1 b.83.1.2 (A:250-312) R 2.4 3.3E+02 0.024 17.3 1.4 18 17-34 34-51 (63)
8 d2p9ba1 b.92.1.10 (A:9-70,A:39 2.0 2.7E+02 0.019 20.5 0.6 9 7-15 66-74 (118)
9 d1oala_ b.1.8.1 (A:) Cu,Zn sup 2.0 2.2E+02 0.016 22.1 -0.0 15 1-15 36-50 (151)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 2.0 5.7E+02 0.042 14.4 1.9 11 426-436 16-26 (34)
No 1
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=10.45 E-value=39 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=19.9
Q ss_pred eeccccceeeecccccCCCCCchhhh
Q 039814 13 VYNFSSLRLRVQNLSNSLNYPPTIRI 38 (454)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (454)
+.|.+.+++||||.--+.+++-.|++
T Consensus 1 ~~d~~~~~~~I~NiVas~~l~~~idL 26 (92)
T d1aisa1 1 MVDMSKVKLRIENIVASVDLFAQLDL 26 (92)
T ss_dssp CCCCTTCEEEEEEEEEEEECCSCCCH
T ss_pred CCCcCcCcEEEEEEEEEEECCCCccH
Confidence 35788999999999877766666554
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.86 E-value=1.1e+02 Score=16.36 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039814 290 IGFMGAMISNLAFVFRNIF 308 (454)
Q Consensus 290 ~G~ll~lls~l~~A~~~Vl 308 (454)
.|.+.+-++.+.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5788888888888888654
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.78 E-value=5.2e+02 Score=21.47 Aligned_cols=54 Identities=6% Similarity=-0.134 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHH
Q 039814 213 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSL 270 (454)
Q Consensus 213 ll~~gll~~l~~~~~~~al~~vs~s~a~ii~s~~Pifv~lls~l~l~er~s~~~~lsl 270 (454)
++.+|++..+..++....+..-+..++. ..-+.++++.++++.+|.-+.+|+-=
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~P 58 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYP 58 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhh
Confidence 4566666655555444444444444333 33445667778888887777776543
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.55 E-value=8.5e+02 Score=21.27 Aligned_cols=85 Identities=4% Similarity=-0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcccCChhhHHHHHhHhhhhe-eeeecCCcchHHHHHHH-HHHHHHHHHHHHHHHhccCCCCCchHHHHH
Q 039814 248 AFSVLVSRFLFGETLPMPVYMSLLPIIGGCA-LAAVTELNFNMIGFMGA-MISNLAFVFRNIFSKKGMKGKSVGGMNYYA 325 (454)
Q Consensus 248 ifv~lls~l~l~er~s~~~~lsl~li~~Gv~-l~~~~~~~~~~~G~ll~-lls~l~~A~~~Vl~kk~~~~~~~~~l~~~~ 325 (454)
.++.++...+.++|++......-. ++|.+ +....+.-..+...+.. +.+.+++-.+..+.+|..-+++.+....=.
T Consensus 240 ~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehh
Confidence 333334444556677665444322 22332 22222322222233333 334455555555555543344455555444
Q ss_pred HHHHHHHHH
Q 039814 326 CLSMMSLLI 334 (454)
Q Consensus 326 ~~~~~~~ll 334 (454)
...+.+.+.
T Consensus 318 ~~Gi~G~l~ 326 (383)
T d1u7ga_ 318 VCGIVGCIM 326 (383)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 445555443
No 5
>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=4.10 E-value=71 Score=24.65 Aligned_cols=11 Identities=64% Similarity=1.174 Sum_probs=9.3
Q ss_pred CCCCchhhhhc
Q 039814 30 LNYPPTIRILH 40 (454)
Q Consensus 30 ~~~~~~~~~~~ 40 (454)
|.|||.+|||.
T Consensus 14 lsYPpa~~ils 24 (143)
T d2foka2 14 SSYPPAIRILT 24 (143)
T ss_dssp HTCHHHHHHHH
T ss_pred hcCChHHHHHH
Confidence 67999999974
No 6
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=3.50 E-value=92 Score=24.31 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=14.6
Q ss_pred Cccccccccccceeccccc
Q 039814 1 NLEQHKHNAHTHVYNFSSL 19 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (454)
|.....|..|.|.+.|.-+
T Consensus 57 N~~~~~HP~HiHg~~F~Vl 75 (154)
T d1gska3 57 NPTRGTHPIHLHLVSFRVL 75 (154)
T ss_dssp ECSSSCEEEEESSCCEEEE
T ss_pred eCCCCCCCEEECCceEEEE
Confidence 3456679999999999654
No 7
>d1kkea1 b.83.1.2 (A:250-312) Reovirus attachment protein sigma 1 {Reovirus [TaxId: 10891]}
Probab=2.37 E-value=3.3e+02 Score=17.30 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=14.1
Q ss_pred ccceeeecccccCCCCCc
Q 039814 17 SSLRLRVQNLSNSLNYPP 34 (454)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (454)
|+=.|.|..++.+|.||-
T Consensus 34 ssgql~vks~sp~lrypi 51 (63)
T d1kkea1 34 SSGQLTVRSTSPNLRYPI 51 (63)
T ss_dssp TTSCEEECCCCCCBCTTE
T ss_pred cCCcEEEeecCcccccee
Confidence 455778888888999983
No 8
>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}
Probab=2.03 E-value=2.7e+02 Score=20.54 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=6.7
Q ss_pred cccccceec
Q 039814 7 HNAHTHVYN 15 (454)
Q Consensus 7 ~~~~~~~~~ 15 (454)
-|+|+|++.
T Consensus 66 id~H~Hl~~ 74 (118)
T d2p9ba1 66 GKSADLLVL 74 (118)
T ss_dssp TSBCCEEEE
T ss_pred cceeEEEEe
Confidence 488999754
No 9
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]}
Probab=1.96 E-value=2.2e+02 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=11.7
Q ss_pred Cccccccccccceec
Q 039814 1 NLEQHKHNAHTHVYN 15 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (454)
+|..-+|..|.|-|-
T Consensus 36 GL~pG~Hg~HIHe~G 50 (151)
T d1oala_ 36 DLTPGEHGFHIHQNG 50 (151)
T ss_dssp SCCSEEECEEEESSS
T ss_pred CCCCCceeEEEecCC
Confidence 466778999999764
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.95 E-value=5.7e+02 Score=14.41 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=7.8
Q ss_pred HHHHHHHHHHh
Q 039814 426 IAILGTFIYSQ 436 (454)
Q Consensus 426 Lil~Gv~ly~~ 436 (454)
+.+.|+++|.-
T Consensus 16 i~~vG~FfYGs 26 (34)
T d2axtj1 16 IVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHT
T ss_pred Hhheeeeeeee
Confidence 56678888764
Done!