Query 039821
Match_columns 555
No_of_seqs 296 out of 2964
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-66 2.9E-71 556.7 26.9 538 1-547 279-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-50 2.6E-55 457.4 35.3 491 9-532 321-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 8.2E-27 1.8E-31 226.6 4.3 165 2-168 120-285 (287)
4 PLN03210 Resistant to P. syrin 99.8 2.7E-19 5.8E-24 203.2 14.2 271 237-530 529-836 (1153)
5 PLN00113 leucine-rich repeat r 99.8 3.2E-19 7E-24 202.2 13.3 274 238-529 116-414 (968)
6 PLN00113 leucine-rich repeat r 99.8 2.1E-18 4.5E-23 195.6 14.6 274 238-529 138-438 (968)
7 KOG0444 Cytoskeletal regulator 99.7 2.7E-19 5.8E-24 175.9 -1.6 287 221-529 35-372 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 8.9E-18 1.9E-22 165.3 -0.1 272 235-527 98-394 (1255)
9 KOG4194 Membrane glycoprotein 99.6 1.2E-16 2.7E-21 156.3 3.0 292 226-527 110-447 (873)
10 KOG0472 Leucine-rich repeat pr 99.6 2.2E-17 4.8E-22 154.7 -4.0 279 229-530 194-539 (565)
11 PRK15387 E3 ubiquitin-protein 99.5 6.7E-14 1.5E-18 148.5 14.0 251 220-529 203-455 (788)
12 KOG0472 Leucine-rich repeat pr 99.5 2.9E-16 6.3E-21 147.2 -4.2 254 242-530 47-308 (565)
13 KOG0618 Serine/threonine phosp 99.4 1.4E-14 3.1E-19 149.4 0.6 256 240-530 219-487 (1081)
14 KOG4194 Membrane glycoprotein 99.4 2.5E-13 5.5E-18 133.4 7.1 265 241-528 53-350 (873)
15 PRK15370 E3 ubiquitin-protein 99.4 6.3E-12 1.4E-16 134.4 14.0 118 224-357 184-301 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 2E-12 4.3E-17 138.2 9.5 240 241-529 179-425 (754)
17 KOG0617 Ras suppressor protein 99.3 3.5E-14 7.6E-19 118.1 -5.9 117 232-356 25-144 (264)
18 PRK15387 E3 ubiquitin-protein 99.3 2.5E-11 5.5E-16 129.1 13.1 229 223-507 227-456 (788)
19 KOG0617 Ras suppressor protein 99.3 1.7E-13 3.7E-18 114.0 -4.1 156 255-446 26-183 (264)
20 KOG0618 Serine/threonine phosp 99.2 6E-12 1.3E-16 130.4 1.0 251 241-514 46-327 (1081)
21 KOG4658 Apoptotic ATPase [Sign 99.1 1.1E-10 2.3E-15 127.1 9.7 277 222-516 527-867 (889)
22 KOG4237 Extracellular matrix p 98.9 2.8E-10 6E-15 107.4 0.8 138 221-365 49-190 (498)
23 KOG4237 Extracellular matrix p 98.9 6.9E-10 1.5E-14 104.8 2.4 118 263-387 68-196 (498)
24 cd00116 LRR_RI Leucine-rich re 98.9 9.1E-10 2E-14 108.7 3.2 104 241-349 24-148 (319)
25 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.8E-14 104.3 1.1 195 259-489 118-317 (505)
26 cd00116 LRR_RI Leucine-rich re 98.8 3.4E-09 7.3E-14 104.7 3.3 235 241-505 52-316 (319)
27 PF14580 LRR_9: Leucine-rich r 98.7 3.8E-08 8.3E-13 85.9 6.5 108 235-350 14-125 (175)
28 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.3E-14 97.5 -3.5 63 282-348 205-270 (419)
29 KOG4341 F-box protein containi 98.6 9.3E-09 2E-13 98.1 -0.8 268 240-532 138-439 (483)
30 KOG0532 Leucine-rich repeat (L 98.5 3.4E-09 7.5E-14 104.7 -4.1 113 243-365 78-191 (722)
31 KOG1259 Nischarin, modulator o 98.5 1.9E-08 4.1E-13 91.8 0.7 131 310-483 280-410 (490)
32 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.5E-12 96.7 5.7 90 259-356 113-203 (394)
33 PF14580 LRR_9: Leucine-rich r 98.5 2.6E-07 5.6E-12 80.8 7.0 122 222-347 23-149 (175)
34 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3E-12 96.1 5.7 69 283-357 112-181 (394)
35 PRK15386 type III secretion pr 98.4 1.1E-06 2.3E-11 86.4 8.6 32 413-446 156-187 (426)
36 KOG3207 Beta-tubulin folding c 98.4 5.8E-08 1.3E-12 93.3 -0.3 181 284-506 118-311 (505)
37 KOG2120 SCF ubiquitin ligase, 98.3 5.5E-08 1.2E-12 88.8 -2.9 185 287-508 185-375 (419)
38 KOG0532 Leucine-rich repeat (L 98.3 4.6E-08 1E-12 96.9 -3.7 189 266-506 79-270 (722)
39 PF13855 LRR_8: Leucine rich r 98.2 7.6E-07 1.6E-11 63.6 2.9 56 288-348 2-59 (61)
40 KOG1259 Nischarin, modulator o 98.2 6.8E-07 1.5E-11 81.9 1.6 101 240-348 307-409 (490)
41 PF13855 LRR_8: Leucine rich r 98.1 2.1E-06 4.6E-11 61.3 3.6 60 262-327 1-61 (61)
42 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.3E-11 55.5 3.5 40 316-356 2-41 (44)
43 PLN03150 hypothetical protein; 98.1 1.4E-05 2.9E-10 85.7 9.1 90 263-357 419-509 (623)
44 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 77.1 9.4 135 316-506 53-187 (426)
45 PLN03150 hypothetical protein; 98.0 1.5E-05 3.2E-10 85.4 7.9 64 289-356 420-484 (623)
46 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 7E-10 50.6 3.4 41 287-332 1-41 (44)
47 KOG4341 F-box protein containi 97.7 4.8E-06 1E-10 80.0 -1.5 147 337-513 293-443 (483)
48 KOG1909 Ran GTPase-activating 97.6 4.9E-05 1.1E-09 71.6 4.0 37 411-447 211-252 (382)
49 KOG1909 Ran GTPase-activating 97.5 2.8E-05 6.1E-10 73.2 0.8 223 240-482 30-308 (382)
50 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 80.9 3.0 30 316-346 174-203 (699)
51 KOG1859 Leucine-rich repeat pr 97.5 3.3E-06 7.2E-11 86.4 -5.9 115 235-356 104-226 (1096)
52 KOG2982 Uncharacterized conser 97.4 9.4E-05 2E-09 68.2 2.4 85 259-348 68-156 (418)
53 KOG0531 Protein phosphatase 1, 97.4 6.2E-05 1.3E-09 76.9 1.1 102 238-348 93-196 (414)
54 KOG0531 Protein phosphatase 1, 97.3 7.5E-05 1.6E-09 76.3 1.4 105 242-356 74-179 (414)
55 KOG3665 ZYG-1-like serine/thre 97.1 0.00038 8.1E-09 74.7 3.9 104 241-350 123-232 (699)
56 KOG1644 U2-associated snRNP A' 97.1 0.00071 1.5E-08 59.1 4.7 62 411-481 86-149 (233)
57 KOG2982 Uncharacterized conser 97.1 0.00015 3.2E-09 66.9 0.3 205 240-478 71-285 (418)
58 KOG1947 Leucine rich repeat pr 97.1 0.00011 2.4E-09 77.0 -0.7 87 260-349 186-280 (482)
59 KOG4579 Leucine-rich repeat (L 96.9 0.00043 9.3E-09 56.5 1.2 90 260-356 51-140 (177)
60 KOG4579 Leucine-rich repeat (L 96.8 0.0005 1.1E-08 56.1 0.8 95 264-365 29-125 (177)
61 KOG1859 Leucine-rich repeat pr 96.7 0.0001 2.2E-09 75.9 -4.4 100 241-348 188-289 (1096)
62 KOG1644 U2-associated snRNP A' 96.6 0.0027 5.8E-08 55.6 4.2 102 241-348 43-150 (233)
63 KOG1947 Leucine rich repeat pr 96.5 0.00054 1.2E-08 71.7 -1.0 89 259-351 211-308 (482)
64 PRK04841 transcriptional regul 96.2 0.07 1.5E-06 60.8 14.3 171 11-212 151-332 (903)
65 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.6E-08 34.9 0.9 21 316-336 1-21 (22)
66 KOG2123 Uncharacterized conser 95.6 0.0015 3.2E-08 60.0 -2.1 85 262-355 19-105 (388)
67 KOG2739 Leucine-rich acidic nu 95.6 0.0075 1.6E-07 55.1 2.2 63 283-349 61-127 (260)
68 KOG2739 Leucine-rich acidic nu 95.5 0.011 2.4E-07 54.0 3.1 106 239-348 42-153 (260)
69 PF13504 LRR_7: Leucine rich r 95.1 0.013 2.7E-07 29.4 1.3 16 316-331 2-17 (17)
70 PF13504 LRR_7: Leucine rich r 94.2 0.037 8E-07 27.7 1.6 17 496-513 1-17 (17)
71 KOG3864 Uncharacterized conser 93.8 0.0061 1.3E-07 53.4 -2.7 65 375-447 121-187 (221)
72 PRK00080 ruvB Holliday junctio 93.5 0.29 6.2E-06 48.3 7.9 156 12-193 151-310 (328)
73 KOG2123 Uncharacterized conser 92.3 0.02 4.4E-07 52.8 -1.9 61 236-297 37-98 (388)
74 PF00560 LRR_1: Leucine Rich R 92.2 0.059 1.3E-06 29.1 0.6 21 288-312 1-21 (22)
75 KOG3864 Uncharacterized conser 92.0 0.048 1E-06 48.0 0.2 90 414-513 102-193 (221)
76 PF13306 LRR_5: Leucine rich r 91.9 0.52 1.1E-05 39.0 6.4 104 241-357 13-120 (129)
77 TIGR00635 ruvB Holliday juncti 91.9 2.9 6.3E-05 40.7 12.6 158 11-194 129-290 (305)
78 PF13306 LRR_5: Leucine rich r 91.8 0.34 7.4E-06 40.1 5.2 89 258-357 8-98 (129)
79 COG5238 RNA1 Ran GTPase-activa 90.6 0.28 6.1E-06 45.4 3.6 43 283-328 88-133 (388)
80 PRK06893 DNA replication initi 90.4 0.99 2.1E-05 41.9 7.3 69 11-82 123-201 (229)
81 COG5238 RNA1 Ran GTPase-activa 89.8 0.7 1.5E-05 42.8 5.4 90 255-348 85-195 (388)
82 smart00369 LRR_TYP Leucine-ric 87.6 0.44 9.6E-06 26.8 1.8 18 316-333 3-20 (26)
83 smart00370 LRR Leucine-rich re 87.6 0.44 9.6E-06 26.8 1.8 18 316-333 3-20 (26)
84 smart00370 LRR Leucine-rich re 87.3 0.51 1.1E-05 26.5 1.9 21 337-358 1-21 (26)
85 smart00369 LRR_TYP Leucine-ric 87.3 0.51 1.1E-05 26.5 1.9 21 337-358 1-21 (26)
86 KOG0473 Leucine-rich repeat pr 86.6 0.054 1.2E-06 48.7 -3.6 86 257-349 37-122 (326)
87 COG2909 MalT ATP-dependent tra 86.5 2.7 6E-05 45.5 8.1 170 9-211 157-337 (894)
88 KOG0473 Leucine-rich repeat pr 83.8 0.11 2.4E-06 46.8 -3.0 74 278-357 33-106 (326)
89 PF01637 Arch_ATPase: Archaeal 80.8 4.6 9.9E-05 37.2 6.5 50 32-83 184-233 (234)
90 smart00367 LRR_CC Leucine-rich 78.6 1.3 2.7E-05 24.9 1.2 16 496-511 2-17 (26)
91 smart00364 LRR_BAC Leucine-ric 76.6 1.6 3.5E-05 24.5 1.2 18 315-332 2-19 (26)
92 PRK09087 hypothetical protein; 73.6 14 0.00029 34.2 7.3 70 11-83 116-194 (226)
93 TIGR03015 pepcterm_ATPase puta 72.6 17 0.00038 34.4 8.1 57 32-88 185-242 (269)
94 TIGR03420 DnaA_homol_Hda DnaA 63.9 28 0.00062 31.9 7.4 71 12-85 123-202 (226)
95 PF13516 LRR_6: Leucine Rich r 58.6 4.9 0.00011 21.9 0.7 13 316-328 3-15 (24)
96 smart00365 LRR_SD22 Leucine-ri 58.0 7.4 0.00016 21.9 1.4 15 316-330 3-17 (26)
97 COG3903 Predicted ATPase [Gene 54.6 14 0.00031 36.7 3.7 169 11-191 116-290 (414)
98 PRK08727 hypothetical protein; 52.2 56 0.0012 30.3 7.2 65 11-78 125-198 (233)
99 smart00368 LRR_RI Leucine rich 49.4 13 0.00027 21.3 1.5 13 316-328 3-15 (28)
100 PRK08084 DNA replication initi 47.9 78 0.0017 29.3 7.4 65 14-81 133-206 (235)
101 PRK05642 DNA replication initi 45.0 83 0.0018 29.2 7.1 69 11-82 129-206 (234)
102 PF00308 Bac_DnaA: Bacterial d 44.3 67 0.0015 29.4 6.3 66 11-79 129-203 (219)
103 PRK06620 hypothetical protein; 39.7 1.3E+02 0.0028 27.5 7.4 65 10-77 111-182 (214)
104 PRK07471 DNA polymerase III su 35.1 1.5E+02 0.0033 29.7 7.6 68 11-85 170-239 (365)
105 PRK05564 DNA polymerase III su 32.0 1.9E+02 0.0041 28.2 7.7 68 10-84 121-190 (313)
106 TIGR01242 26Sp45 26S proteasom 30.8 96 0.0021 31.0 5.5 64 11-78 260-328 (364)
107 PRK14087 dnaA chromosomal repl 30.2 1.5E+02 0.0031 30.8 6.7 77 11-88 238-323 (450)
108 COG3899 Predicted ATPase [Gene 28.4 1.5E+02 0.0032 33.7 6.8 109 30-148 210-324 (849)
109 PF03861 ANTAR: ANTAR domain; 27.9 71 0.0015 21.8 2.8 32 36-71 25-56 (56)
110 PRK08903 DnaA regulatory inact 27.2 2.4E+02 0.0053 25.7 7.2 55 31-88 149-203 (227)
111 PF02284 COX5A: Cytochrome c o 23.8 3.7E+02 0.0081 21.3 7.0 69 41-109 23-94 (108)
112 PF14516 AAA_35: AAA-like doma 23.1 2.1E+02 0.0046 28.1 6.2 53 31-90 193-245 (331)
113 PF07725 LRR_3: Leucine Rich R 22.9 51 0.0011 17.3 0.9 16 317-332 2-17 (20)
114 PF10236 DAP3: Mitochondrial r 22.6 1.5E+02 0.0033 28.8 5.0 47 33-79 258-304 (309)
115 PRK00411 cdc6 cell division co 22.3 4E+02 0.0086 26.8 8.3 72 15-86 176-257 (394)
116 PF05496 RuvB_N: Holliday junc 21.9 1.4E+02 0.0031 27.4 4.3 67 12-81 150-218 (233)
117 COG0593 DnaA ATPase involved i 21.0 8.9E+02 0.019 24.7 10.2 71 12-82 208-288 (408)
118 PRK09112 DNA polymerase III su 20.6 3.3E+02 0.0071 27.1 7.0 66 15-85 175-241 (351)
119 PRK14086 dnaA chromosomal repl 20.3 6.4E+02 0.014 27.3 9.3 63 12-77 410-481 (617)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-66 Score=556.68 Aligned_cols=538 Identities=42% Similarity=0.707 Sum_probs=432.2
Q ss_pred CCCCCCCCCCCCcEEEEEeCchhhhcc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCch
Q 039821 1 VGIPLPSPQNTTSKVVFTTRFIDVCGS-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPL 79 (555)
Q Consensus 1 ~~~p~~~~~~~gsrIivTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 79 (555)
||+||| ....||||++|||++.||.. +++...++++.|+.+|||.||.+.||.......+.+.++|++|+++|+|+||
T Consensus 279 I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPL 357 (889)
T KOG4658|consen 279 IGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPL 357 (889)
T ss_pred cCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHH
Confidence 789999 88889999999999999998 8888999999999999999999999988656666699999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhh-hhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHH
Q 039821 80 ALITIGRAMAYRKKAEQWRRAIEELRRS-ASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDC 158 (555)
Q Consensus 80 ai~~~~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~ 158 (555)
|++++|+.|+.+.+.++|+++.+.+... ..+++...+.+++++++||+.||. ++|.||+|||.||+||.|++++|+..
T Consensus 358 Al~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~y 436 (889)
T KOG4658|consen 358 ALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEY 436 (889)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHH
Confidence 9999999999999999999999999876 555555567899999999999996 99999999999999999999999999
Q ss_pred HHHhCCCCC-CcccChHHhHHHHHHHHHHhccccccC----CCeEEechhhHHHHHHHHhhhhcccccEEEEcCCCCCCC
Q 039821 159 WIGEGFLGE-SDRFGAENQGYDILDTLVRACLLEEVE----DDKVKMHDVIRDMALWITGEIEKEKRNFLVCAGAGLNEA 233 (555)
Q Consensus 159 w~aeg~~~~-~~~~~~~~~~~~~l~~Lv~~sli~~~~----~~~~~mhdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
|+||||+.+ .++..+++.|++|+++|+.++++...+ ..+|+|||+|||+|.+++.+.+...++.++..+.+....
T Consensus 437 WiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~ 516 (889)
T KOG4658|consen 437 WIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEI 516 (889)
T ss_pred HHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccc
Confidence 999999988 568899999999999999999998753 478999999999999999987777788888777777888
Q ss_pred CCccCccceeEeeccccccccccCCCCCCcceEEEcccCcc-hhccchhHhccCCcccEEEecCCCCCccccccChhHhh
Q 039821 234 PDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNED-VEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSE 312 (555)
Q Consensus 234 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~ 312 (555)
+....+..+|++++.++.+..++....+++|++|.+.++.. +..++..+|..|+.|++||+++|.. ..++|.+|++
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~ 593 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGE 593 (889)
T ss_pred ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc---cCcCChHHhh
Confidence 89999999999999999999998888899999999997763 7788888899999999999999966 9999999999
Q ss_pred hhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCcc---------ccCCCcccc
Q 039821 313 LGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDAT---------AFADLNHLN 382 (555)
Q Consensus 313 l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~~---------~l~~l~~L~ 382 (555)
+. +||||+++++.+..+|.++++|++|.+||+..+..+..+|. ++..|.+| +|.+.... ++..+.+|+
T Consensus 594 Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 594 LV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99 99999999999999999999999999999999977777754 36668887 55444322 334444555
Q ss_pred ccccccccc--cc-------------eeeecccccccccccccccccccEEEEeecCC----------------------
Q 039821 383 ELWIDRAKE--LE-------------LLKIDYTEIVRKRREPFVFRSLHCVTIHICQK---------------------- 425 (555)
Q Consensus 383 ~L~l~~~~~--l~-------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------- 425 (555)
.+.+..... ++ .+.+..............+.+|+.|.+.+|..
T Consensus 672 ~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 672 NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred hheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 444432221 00 00000011111222333566666666666644
Q ss_pred --------CCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCccccee-ecCcccccccccccccCCC
Q 039821 426 --------LKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLL-RLSHLPNLKSIYWKPLPFT 496 (555)
Q Consensus 426 --------l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~~ 496 (555)
...+.|....|+|+.|.+..|..++++++.... ...+......|.+++.+ .+.+...++.+.+....++
T Consensus 752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~--~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA--LLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred HHhhccccccccchhhccCcccEEEEecccccccCCCHHHH--hhhcccEEecccccccceeeecCCCCceeEecccCcc
Confidence 333334445799999999999999988663211 11111123345566666 4666666776666666778
Q ss_pred CcceEEEcCCCCCCccCCCCCccc--c-cceEEechhhhhhccccCchhhhhhc
Q 039821 497 HLKEMVVRGCDQLEKLPLDSNSAK--E-RKFVIRGEEDWWNLLQWEDESTQIAF 547 (555)
Q Consensus 497 ~L~~L~l~~C~~L~~lp~~~~~~~--L-~~l~i~~~~~~~~~~~~~~~~~~~~~ 547 (555)
+|+.+.+..||++.++|....... . ..+....+.++.++++|+++++...+
T Consensus 830 ~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 830 KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred chhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 899999999999999998765432 2 23444466778999999999988765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-50 Score=457.39 Aligned_cols=491 Identities=20% Similarity=0.260 Sum_probs=309.0
Q ss_pred CCCCcEEEEEeCchhhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 9 QNTTSKVVFTTRFIDVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 9 ~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
.++|||||||||+++++..++...+|+|+.|+++|||+||+++||+.. ..++++.+++++|+++|+|+|||++++|++|
T Consensus 321 ~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 321 FGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred CCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 367999999999999998877888999999999999999999999876 4456789999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHHHhCCCCCC
Q 039821 89 AYRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLGES 168 (555)
Q Consensus 89 ~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~aeg~~~~~ 168 (555)
++ ++.++|+.+++++..... .++.++|++||++|+++..|.||+++|+||.+..++ .+..|++++.....
T Consensus 400 ~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~ 469 (1153)
T PLN03210 400 RG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN 469 (1153)
T ss_pred cC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch
Confidence 98 578999999999877543 379999999999998745899999999999987654 37778887655432
Q ss_pred cccChHHhHHHHHHHHHHhccccccCCCeEEechhhHHHHHHHHhhhh--cccccEEEEcCC---------CCCC-----
Q 039821 169 DRFGAENQGYDILDTLVRACLLEEVEDDKVKMHDVIRDMALWITGEIE--KEKRNFLVCAGA---------GLNE----- 232 (555)
Q Consensus 169 ~~~~~~~~~~~~l~~Lv~~sli~~~~~~~~~mhdl~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~----- 232 (555)
. -++.|++++|++.. .+++.|||+++++|+.+++++. +.++.+++...+ +...
T Consensus 470 ~----------~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 470 I----------GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred h----------ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 1 28899999999875 4689999999999999987642 223333322100 0000
Q ss_pred -----C-------CCccC-------------------------------ccceeEeeccccccccccCCCCCCcceEEEc
Q 039821 233 -----A-------PDVKG-------------------------------WENVRRLSLMQNQIETLSEVPTCPHLLTLFL 269 (555)
Q Consensus 233 -----~-------~~~~~-------------------------------~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l 269 (555)
. ....+ ..++|.|.+.++....+|......+|+.|++
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L 618 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQM 618 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEEC
Confidence 0 00011 1235555555555555655555677777777
Q ss_pred ccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCC-CCcccchhhhCCCCCcEEccCCC
Q 039821 270 DFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHT-SIRELPEELKKLVNLKCLNLRRT 348 (555)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~ 348 (555)
.++. +..++.. +..+++|++|+++++.. +..+|. ++.+. +|++|++++| .+..+|.+++.+++|+.|++++|
T Consensus 619 ~~s~-l~~L~~~-~~~l~~Lk~L~Ls~~~~---l~~ip~-ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 619 QGSK-LEKLWDG-VHSLTGLRNIDLRGSKN---LKEIPD-LSMAT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cCcc-ccccccc-cccCCCCCEEECCCCCC---cCcCCc-cccCC-cccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 7543 5555544 45677777777776644 555553 55555 7777777776 56667777777777777777777
Q ss_pred ccccccchHHHhccccc-cccccCccccCC----Cccccccccccccccceeeecc------------ccc-------cc
Q 039821 349 ELLNKIPRQLISNSSRD-TTSVIDATAFAD----LNHLNELWIDRAKELELLKIDY------------TEI-------VR 404 (555)
Q Consensus 349 ~~l~~lp~~~i~~l~~L-~L~~~~~~~l~~----l~~L~~L~l~~~~~l~~l~~~~------------~~~-------~~ 404 (555)
..+..+|.. + ++++| .|.+.++..+.. .++|+.|++.++. ++.+|... ... ..
T Consensus 692 ~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 692 ENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccc
Confidence 667777764 2 45555 444444432222 1244444444332 11111100 000 00
Q ss_pred c-cccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccC----CC----CCCccc
Q 039821 405 K-RREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMG----HI----SPFENL 474 (555)
Q Consensus 405 ~-~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~----~~----~~~~~L 474 (555)
. +.....+++|+.|++++|..+..+| .++.+++|+.|++++|..++.+|....+..+..+.- .+ ...++|
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccccc
Confidence 0 0000013455555555554444433 445555555555555555544433111000000000 00 011234
Q ss_pred ceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEechhhh
Q 039821 475 RLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGEEDW 532 (555)
Q Consensus 475 ~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~~~~ 532 (555)
+.|++++ +.++.+|..+..+++|+.|++.+|++|+.+|.....++ |+.+.+.+|...
T Consensus 849 ~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 849 SDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 4444444 23444454555667777777777777777777666655 777777777543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=8.2e-27 Score=226.59 Aligned_cols=165 Identities=38% Similarity=0.696 Sum_probs=131.6
Q ss_pred CCCCCCCCCCCcEEEEEeCchhhhcccCC-cceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchH
Q 039821 2 GIPLPSPQNTTSKVVFTTRFIDVCGSMES-HRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLA 80 (555)
Q Consensus 2 ~~p~~~~~~~gsrIivTTR~~~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 80 (555)
..++| ..+.||+||||||++.|+..+.. ...|+|++|+.+||++||.+.++.........+++.+++|+++|+|+|||
T Consensus 120 ~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 120 REPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp ----H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566 66779999999999999887654 67999999999999999999997655233445567899999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHH
Q 039821 81 LITIGRAMAYRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWI 160 (555)
Q Consensus 81 i~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~ 160 (555)
|+++|++|+.+.+..+|+++++.+.....+.......+..++.+||+.|++ ++|.||.|||+||+++.|+++.++++|+
T Consensus 199 l~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~ 277 (287)
T PF00931_consen 199 LKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWV 277 (287)
T ss_dssp HHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHH
Confidence 999999997666778999999888876644333456899999999999999 9999999999999999999999999999
Q ss_pred HhCCCCCC
Q 039821 161 GEGFLGES 168 (555)
Q Consensus 161 aeg~~~~~ 168 (555)
+|||+...
T Consensus 278 ~e~~i~~~ 285 (287)
T PF00931_consen 278 AEGFISSK 285 (287)
T ss_dssp T-HHTC--
T ss_pred HCCCCccc
Confidence 99999764
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.7e-19 Score=203.24 Aligned_cols=271 Identities=23% Similarity=0.341 Sum_probs=164.2
Q ss_pred cCccceeEeeccccccccc----cCCCCCCcceEEEcccCc-----ch-hccchhHhccC-CcccEEEecCCCCCccccc
Q 039821 237 KGWENVRRLSLMQNQIETL----SEVPTCPHLLTLFLDFNE-----DV-EMIADGFFQFM-PSLKVLKMSNCGKSWSNFQ 305 (555)
Q Consensus 237 ~~~~~l~~L~l~~~~~~~l----~~~~~~~~L~~L~l~~~~-----~~-~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~ 305 (555)
.+..+++.+++....+..+ ..+.++++|+.|.+..+. .. ..+|.. +..+ .+||.|++.++ . ...
T Consensus 529 ~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~---l~~ 603 (1153)
T PLN03210 529 TGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-P---LRC 603 (1153)
T ss_pred cccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-C---CCC
Confidence 4455677776665444332 124678888888876431 01 123443 3333 46888888887 5 777
Q ss_pred cChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCcc-------ccCC
Q 039821 306 LPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDAT-------AFAD 377 (555)
Q Consensus 306 lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~~-------~l~~ 377 (555)
+|..+ ... +|+.|+++++.+..+|.++..+++|+.|++++|..+..+|. ++.+.+| .|.+.++. .++.
T Consensus 604 lP~~f-~~~-~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 604 MPSNF-RPE-NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCcC-Ccc-CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhc
Confidence 77766 344 88888888888888888888888888888888877777875 6666666 55554433 3456
Q ss_pred CccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCc
Q 039821 378 LNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGK 457 (555)
Q Consensus 378 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (555)
+++|+.|++++|..++.++... .+++|+.|++++|..+..+|.+ .++|++|+++++. ++.+|....
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-----------~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~~ 745 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-----------NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNLR 745 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-----------CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-ccccccccc
Confidence 6777777777777766665432 4566667777666655554422 3455666665553 233322111
Q ss_pred cccccccc------------------CCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCcc
Q 039821 458 FAEVPEMM------------------GHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSA 519 (555)
Q Consensus 458 ~~~l~~~~------------------~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~ 519 (555)
+..+..+. .....+++|+.|++++|+.+..+|....++++|+.|++++|++|+.+|...+-.
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~ 825 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE 825 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence 11111000 001123566777777766666666666667777777777777777777655322
Q ss_pred cccceEEechh
Q 039821 520 KERKFVIRGEE 530 (555)
Q Consensus 520 ~L~~l~i~~~~ 530 (555)
.|+.+++++|.
T Consensus 826 sL~~L~Ls~c~ 836 (1153)
T PLN03210 826 SLESLDLSGCS 836 (1153)
T ss_pred ccCEEECCCCC
Confidence 36666666663
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=3.2e-19 Score=202.23 Aligned_cols=274 Identities=20% Similarity=0.214 Sum_probs=140.4
Q ss_pred CccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 238 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
...++++|++.++.+........+++|++|++++|.....+|. .+..+++|++|++++|.. ...+|..++++. +|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~-~L 190 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVL---VGKIPNSLTNLT-SL 190 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcc---cccCChhhhhCc-CC
Confidence 3456666666666554332334556666666664442222333 356666666666666633 345566666665 66
Q ss_pred cEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCc-------cccCCCcccccccccc
Q 039821 318 ELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDA-------TAFADLNHLNELWIDR 388 (555)
Q Consensus 318 ~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~-------~~l~~l~~L~~L~l~~ 388 (555)
++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++.+| +|++... ..++++++|+.|.+++
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 66666666554 35666666666666666666443455554 5565555 3333221 1345566666666555
Q ss_pred cccc-------------ceeeecccccc-cccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhh
Q 039821 389 AKEL-------------ELLKIDYTEIV-RKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEII 453 (555)
Q Consensus 389 ~~~l-------------~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 453 (555)
+.-. +.+.++.+... ..+.....+++|+.|++++|.....++ .++.+++|+.|++++|...+.++
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 4221 11112111111 111222244455555555543322222 34455555555555554333222
Q ss_pred ccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 454 SVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
. .++.+++|+.|+++++.-...+|.....+++|+.|++.+++-...+|.....+. |+.+++.+|
T Consensus 350 ~------------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 350 K------------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred h------------HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 2 345556666666666543344554455566666666666655555555444444 666666654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2.1e-18 Score=195.61 Aligned_cols=274 Identities=19% Similarity=0.149 Sum_probs=191.4
Q ss_pred CccceeEeecccccccc-cc-CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhc
Q 039821 238 GWENVRRLSLMQNQIET-LS-EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGS 315 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~ 315 (555)
...++++|++.++.+.. ++ ....+++|++|+++++.....+|. .+.++++|++|++++|.. ...+|..++.+.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~- 212 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQL---VGQIPRELGQMK- 212 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCC---cCcCChHHcCcC-
Confidence 45678888888777653 33 246778888888876653334444 367788888888887744 456777777777
Q ss_pred cccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCc-------cccCCCcccccccc
Q 039821 316 SLELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDA-------TAFADLNHLNELWI 386 (555)
Q Consensus 316 ~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~-------~~l~~l~~L~~L~l 386 (555)
+|++|++++|.+. .+|..++.+++|++|++++|.....+|.. ++++.+| .|.+... ..+.++++|++|++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 8888888888776 56777788888888888887544456655 7777766 4433321 13456677777777
Q ss_pred cccc-------------ccceeeeccccccc-ccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchh
Q 039821 387 DRAK-------------ELELLKIDYTEIVR-KRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEE 451 (555)
Q Consensus 387 ~~~~-------------~l~~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~ 451 (555)
++|. .++.+.+..+.... .+.....+++|+.|++++|.....+| .++.+++|+.|++++|.....
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 6553 23333333332221 33344578999999999996554444 788999999999999976554
Q ss_pred hhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 452 IISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 452 ~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
++. .+..+++|+.|+++++.-...+|.....+++|+.|++++|.--..+|.....++ |+.++++++
T Consensus 372 ~p~------------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 372 IPE------------GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CCh------------hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 443 566778999999999765566777777899999999999976667787666666 888888865
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=2.7e-19 Score=175.92 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=131.3
Q ss_pred cEEEEcCCCCCCCCC-ccCccceeEeeccccccccc-cCCCCCCcceEEEcccCcc-hhccchhHhccCCcccEEEecCC
Q 039821 221 NFLVCAGAGLNEAPD-VKGWENVRRLSLMQNQIETL-SEVPTCPHLLTLFLDFNED-VEMIADGFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 297 (555)
.|+..+...+..+|. .....++.+|++.+|.+..+ ..+..++.||.+.+..++. -..+|++ +-++..|.+|+|+.|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 344444444443332 12234455555555544332 2234444455544443321 1223433 223444555555544
Q ss_pred CCCccccccChhHhhhhccccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccc-cccccC----
Q 039821 298 GKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID---- 371 (555)
Q Consensus 298 ~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~---- 371 (555)
. +...|..+..-. ++-.|+||+|+|..+|.. +-+|+.|-.||+++| .+..+|+. +..|..| +|.+.+
T Consensus 114 -q---L~EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 114 -Q---LREVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred -h---hhhcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 3 444454444444 444555555555555442 234444445555544 34444444 4444444 222221
Q ss_pred ---ccccCCCccccccccccc--------------cccceeeecccccccccccccccccccEEEEeecCCCCcc-----
Q 039821 372 ---ATAFADLNHLNELWIDRA--------------KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT----- 429 (555)
Q Consensus 372 ---~~~l~~l~~L~~L~l~~~--------------~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----- 429 (555)
...++.+++|+.|++++. .+|..++++.++....|.-...+++|+.|+++++ .++.+
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~ 265 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEG 265 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHH
Confidence 113334444444443322 1222233333333333444444555555555554 22222
Q ss_pred -------------------cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccc
Q 039821 430 -------------------TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYW 490 (555)
Q Consensus 430 -------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 490 (555)
..+..++.|+.|.+.+|..- +..+++.++.+.+|+.+...+ ++|+-.|.
T Consensus 266 ~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-----------FeGiPSGIGKL~~Levf~aan-N~LElVPE 333 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-----------FEGIPSGIGKLIQLEVFHAAN-NKLELVPE 333 (1255)
T ss_pred HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc-----------ccCCccchhhhhhhHHHHhhc-cccccCch
Confidence 23444445555544443221 122333556666666666665 45666666
Q ss_pred cccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 491 KPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 491 ~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
+.+.++.|+.|.+ +|..|-.||....-++ |+.+++..+
T Consensus 334 glcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCC
Confidence 6666666666666 4566666666666655 666666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=8.9e-18 Score=165.34 Aligned_cols=272 Identities=19% Similarity=0.239 Sum_probs=209.4
Q ss_pred CccCccceeEeeccccccccccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhh
Q 039821 235 DVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSEL 313 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l 313 (555)
++..+..+..|++++|.+.+.|.. ...+++-+|+++++ .++.+|...|-++..|-+|+|++| . +..+|+.+..+
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-r---Le~LPPQ~RRL 172 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-R---LEMLPPQIRRL 172 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-h---hhhcCHHHHHH
Confidence 456677889999999998887654 77889999999955 589999988899999999999999 7 89999999999
Q ss_pred hccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCcc-ccccchHHHhccccc---cccccCcc----ccCCCcccccc
Q 039821 314 GSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTEL-LNKIPRQLISNSSRD---TTSVIDAT----AFADLNHLNEL 384 (555)
Q Consensus 314 ~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~l~~L---~L~~~~~~----~l~~l~~L~~L 384 (555)
. +|++|+|++|.+...-- .+..+++|++|.++++.. +..+|.+ +..|.+| .|+....+ .+.++++|+.|
T Consensus 173 ~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 S-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred h-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcchHHHhhhhhhhee
Confidence 8 99999999996542211 122377888888888643 4578876 7777777 44444433 34578899999
Q ss_pred cccccc------------ccceeeecccccccccccccccccccEEEEeecCC-CCcc-cccccCCCCceEEeecCCcch
Q 039821 385 WIDRAK------------ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQK-LKDT-TFLVFAPNLKSLSLFHCGAME 450 (555)
Q Consensus 385 ~l~~~~------------~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~-~~l~~l~~L~~L~l~~~~~~~ 450 (555)
+++++. +++.+.++.+....+|...+.+++|+.|.+.++.. ...+ +.++.+.+|+.+..++| +++
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LE 329 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLE 329 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccc
Confidence 998874 35556666666667788888999999999988842 2334 47899999999999876 455
Q ss_pred hhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEe
Q 039821 451 EIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIR 527 (555)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~ 527 (555)
-+|. .++.|+.|+.|.++. +.|..+|..+.-++.|+.|+++..|+|.--|......+ ++.-+|.
T Consensus 330 lVPE------------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 330 LVPE------------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred cCch------------hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 5555 789999999999986 78999999999999999999999999966554433322 5554443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-16 Score=156.29 Aligned_cols=292 Identities=20% Similarity=0.237 Sum_probs=146.9
Q ss_pred cCCCCCCCCCccCc-cceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcc
Q 039821 226 AGAGLNEAPDVKGW-ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWS 302 (555)
Q Consensus 226 ~~~~~~~~~~~~~~-~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 302 (555)
....+..+|...+. .++..|++.+|.+..+.+ +..++.||+|+++.+ .+..++...|..-.++++|+|++| .
T Consensus 110 ~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-~--- 184 (873)
T KOG4194|consen 110 NKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-R--- 184 (873)
T ss_pred ccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-c---
Confidence 33444555554433 457777777777766543 366777777777744 366666655666677778888777 4
Q ss_pred cccc-ChhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc---cccccCcc----
Q 039821 303 NFQL-PVGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD---TTSVIDAT---- 373 (555)
Q Consensus 303 ~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L---~L~~~~~~---- 373 (555)
+..+ -..|..+. +|..|.|++|+++.+|. .+.+|++|+.|+|..| .++.+---.+..|.+| .|.-.++.
T Consensus 185 It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 185 ITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred ccccccccccccc-hheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccC
Confidence 4443 23445555 77777888888888877 4555788888877777 3333311113333333 22212221
Q ss_pred -ccCCCccccccccc-------------cccccceeeeccccccccccc-ccccccccEEEEeecCCCCccc--ccccCC
Q 039821 374 -AFADLNHLNELWID-------------RAKELELLKIDYTEIVRKRRE-PFVFRSLHCVTIHICQKLKDTT--FLVFAP 436 (555)
Q Consensus 374 -~l~~l~~L~~L~l~-------------~~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~--~l~~l~ 436 (555)
.|..+.++++|++. +...|+.+.++.+.+..+-.. -...++|+.|+++++ .++.++ .+..+.
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLS 341 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHH
Confidence 22223333333222 111222222322222221100 013455666666655 333332 333444
Q ss_pred CCceEEeecCCcchhhhccCc--c--------------cccccccCCCCCCcccceeecCccccccccccc-ccCCCCcc
Q 039821 437 NLKSLSLFHCGAMEEIISVGK--F--------------AEVPEMMGHISPFENLRLLRLSHLPNLKSIYWK-PLPFTHLK 499 (555)
Q Consensus 437 ~L~~L~l~~~~~~~~~~~~~~--~--------------~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~~~~L~ 499 (555)
.|++|+|+.|. ++.+.+..+ . ..++.-...+.++++|+.|++.+ ++++.++.. +..++.|+
T Consensus 342 ~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 342 QLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALE 419 (873)
T ss_pred Hhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccc
Confidence 44444444442 111111000 0 00011112345677788888877 577777653 34477777
Q ss_pred eEEEcCCCCCCccCCCCCcccccceEEe
Q 039821 500 EMVVRGCDQLEKLPLDSNSAKERKFVIR 527 (555)
Q Consensus 500 ~L~l~~C~~L~~lp~~~~~~~L~~l~i~ 527 (555)
.|++.+-+--.-=|.....+.|+++.+.
T Consensus 420 ~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 420 HLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecCCCCcceeecccccccchhhhhhhc
Confidence 7777764433333444444556666554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=2.2e-17 Score=154.65 Aligned_cols=279 Identities=21% Similarity=0.258 Sum_probs=180.4
Q ss_pred CCCCCC-CccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC
Q 039821 229 GLNEAP-DVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP 307 (555)
Q Consensus 229 ~~~~~~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp 307 (555)
.+..+| ...++.++..|.++.|.+..+|.+.+|..|..+.+. .+.++.+|.+....+.+|.+||++.| . ++++|
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~~lpae~~~~L~~l~vLDLRdN-k---lke~P 268 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIEMLPAEHLKHLNSLLVLDLRDN-K---LKEVP 268 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHHhhHHHHhcccccceeeecccc-c---cccCc
Confidence 344444 456678888999999999999999999999999998 55699999998889999999999999 7 99999
Q ss_pred hhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhcccc--c-cccc----cCcc-------
Q 039821 308 VGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSR--D-TTSV----IDAT------- 373 (555)
Q Consensus 308 ~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~--L-~L~~----~~~~------- 373 (555)
..++.+. +|.+||+++|.|+.+|.++++| .|+.|-+.||+ ++.+-.+++++-+. | +|.. .+.+
T Consensus 269 de~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 269 DEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred hHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 9999999 9999999999999999999999 99999999994 66666664433221 1 1111 0100
Q ss_pred -----------ccCCCcccccccccccc---------------ccceeeeccccccc-----------------------
Q 039821 374 -----------AFADLNHLNELWIDRAK---------------ELELLKIDYTEIVR----------------------- 404 (555)
Q Consensus 374 -----------~l~~l~~L~~L~l~~~~---------------~l~~l~~~~~~~~~----------------------- 404 (555)
+...+.+.+.|.+++-. ..+.+..+.+....
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 11223444455444321 01111111111111
Q ss_pred -ccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccc
Q 039821 405 -KRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLP 483 (555)
Q Consensus 405 -~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 483 (555)
.+..++.+++|+.|+++++.--..|..++.+..|+.|+++.|. ...+|. .+-.+..|+.+-.++ .
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~------------~~y~lq~lEtllas~-n 491 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPE------------CLYELQTLETLLASN-N 491 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchH------------HHhhHHHHHHHHhcc-c
Confidence 2334456777888888777333333367777778888887762 222222 111222233333332 3
Q ss_pred cccccccc-ccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEechh
Q 039821 484 NLKSIYWK-PLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGEE 530 (555)
Q Consensus 484 ~L~~l~~~-~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~~ 530 (555)
.+.+++.+ ...+.+|..|++.+ ..++++|.....++ ++.+.+.|++
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 45554443 45566666666655 56666776666666 7777776653
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6.7e-14 Score=148.46 Aligned_cols=251 Identities=22% Similarity=0.176 Sum_probs=153.2
Q ss_pred ccEEEEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 220 RNFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
...+......+..+|... ..+++.|.+.+|.+..++.. .++|++|++++| .+..+|.. .++|+.|++++| .
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN-P 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc----ccccceeeccCC-c
Confidence 445666666777777633 35789999999999888754 588999999965 57777642 468999999988 5
Q ss_pred CccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCc
Q 039821 300 SWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLN 379 (555)
Q Consensus 300 ~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~ 379 (555)
+..+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ...+..|.++...+..++.++
T Consensus 274 ---L~~Lp~lp----~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 274 ---LTHLPALP----SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred ---hhhhhhch----hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-cccccccccccCccccccccc
Confidence 66666532 3888999999999999863 578999999998 67778763 556666655555554555443
Q ss_pred -cccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcc
Q 039821 380 -HLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKF 458 (555)
Q Consensus 380 -~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 458 (555)
+|+.|+++++ .+..+|. ...+|+.|++++| .++.+|.+ .++|+.|++++|. +..++.
T Consensus 342 ~~Lq~LdLS~N-~Ls~LP~-------------lp~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~---- 399 (788)
T PRK15387 342 SGLQELSVSDN-QLASLPT-------------LPSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV---- 399 (788)
T ss_pred cccceEecCCC-ccCCCCC-------------CCcccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC----
Confidence 6778877765 3333321 1234555555554 33334322 2456666665552 222211
Q ss_pred cccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 459 AEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 459 ~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
..++|+.|+++++ .+..+|.. +.+|+.|++++ .+++.||.....+. |+.++++++
T Consensus 400 -----------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 -----------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred -----------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 1234555555553 34444422 23445555544 34555554444333 555555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=2.9e-16 Score=147.21 Aligned_cols=254 Identities=21% Similarity=0.273 Sum_probs=175.7
Q ss_pred eeEeeccccccccccC-CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEE
Q 039821 242 VRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELL 320 (555)
Q Consensus 242 l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L 320 (555)
+..+.+.+|.+..+.. ...+..|.++.++.+. +...|+. ++.+..++.|+.+.| . +..+|+.++.+. .|+.|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~a-ig~l~~l~~l~vs~n-~---ls~lp~~i~s~~-~l~~l 119 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAA-IGELEALKSLNVSHN-K---LSELPEQIGSLI-SLVKL 119 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHH-HHHHHHHHHhhcccc-h---HhhccHHHhhhh-hhhhh
Confidence 3445566666655433 3666777777777544 5555554 566777777777777 5 777777777777 77777
Q ss_pred EcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-ccccc--Cccc----cCCCccccccccccccccc
Q 039821 321 DISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVI--DATA----FADLNHLNELWIDRAKELE 393 (555)
Q Consensus 321 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~--~~~~----l~~l~~L~~L~l~~~~~l~ 393 (555)
+.+++.+.++|.+|+.+-.|+.++..+| ++..+|.+ ++.+.++ .+... .... .-+++.|++|+...+ .++
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~ 196 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLE 196 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhh
Confidence 7777777777777777777777777777 56777766 5555544 22222 1111 112455555543222 234
Q ss_pred eeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcc
Q 039821 394 LLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFEN 473 (555)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 473 (555)
.+|.+ .+.+.+|..|++..+ ++..+|.+.++..|++|.++.| .++-++. .....+++
T Consensus 197 tlP~~----------lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N-~i~~lpa-----------e~~~~L~~ 253 (565)
T KOG0472|consen 197 TLPPE----------LGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGEN-QIEMLPA-----------EHLKHLNS 253 (565)
T ss_pred cCChh----------hcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhccc-HHHhhHH-----------HHhccccc
Confidence 44433 336778888888877 6677778888888888888766 3443333 13347899
Q ss_pred cceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEechh
Q 039821 474 LRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIRGEE 530 (555)
Q Consensus 474 L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~~~~ 530 (555)
|..|++++ +++++.|.++.-+.+|++|++++ ..+..+|....+++|+.+.+.|++
T Consensus 254 l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 254 LLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred ceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCc
Confidence 99999999 69999999999999999999988 689999999999999999988863
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1.4e-14 Score=149.43 Aligned_cols=256 Identities=19% Similarity=0.248 Sum_probs=188.7
Q ss_pred cceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccE
Q 039821 240 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLEL 319 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~ 319 (555)
.++++|...++.+..+.....-.+|++++++.+. +..+| +++..+.+|..++...| . +..+|..+.... +|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp-~wi~~~~nle~l~~n~N-~---l~~lp~ri~~~~-~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLP-EWIGACANLEALNANHN-R---LVALPLRISRIT-SLVS 291 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhh-hhcch-HHHHhcccceEecccch-h---HHhhHHHHhhhh-hHHH
Confidence 4778888888888766556777889999999554 77888 78999999999999999 6 899999999998 9999
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhcccc-c-c-------ccccCccccCCCcccccccccccc
Q 039821 320 LDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSR-D-T-------TSVIDATAFADLNHLNELWIDRAK 390 (555)
Q Consensus 320 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L-~-------L~~~~~~~l~~l~~L~~L~l~~~~ 390 (555)
|++.+|.++.+|.....+++|++|+|..| ++..+|..++..+-. | . +....+.+=..++.|+.|.+.++
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN- 369 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN- 369 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-
Confidence 99999999999999999999999999999 789999864333222 1 1 11111111123455555655554
Q ss_pred ccceeeecccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCC
Q 039821 391 ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHI 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~ 468 (555)
.|+.-. + +.+..+++|+.|++++| .+..+| .+.+++.|++|+|+|| .++.++. .+
T Consensus 370 ~Ltd~c--------~-p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~------------tv 426 (1081)
T KOG0618|consen 370 HLTDSC--------F-PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPD------------TV 426 (1081)
T ss_pred cccccc--------h-hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhH------------HH
Confidence 222111 1 11227899999999988 666666 6778999999999998 4555554 67
Q ss_pred CCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCcc--CCCCCcccccceEEechh
Q 039821 469 SPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKL--PLDSNSAKERKFVIRGEE 530 (555)
Q Consensus 469 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~l--p~~~~~~~L~~l~i~~~~ 530 (555)
..++.|++|...+ +.+..+| ....++.|+.+++ +|.+|+.+ |.....-.|++++++|+.
T Consensus 427 a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCc
Confidence 7888888888876 5777777 5677888898888 56777764 433333348888888874
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-13 Score=133.45 Aligned_cols=265 Identities=22% Similarity=0.232 Sum_probs=130.5
Q ss_pred ceeEeeccccccccccC--C--CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcc
Q 039821 241 NVRRLSLMQNQIETLSE--V--PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSS 316 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~--~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~ 316 (555)
+.+.|+.++..+..+.. + .-.+..++|+++ ++.+..+...+|..+++|+.+++.+| . +..+|....... |
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldls-nNkl~~id~~~f~nl~nLq~v~l~~N-~---Lt~IP~f~~~sg-h 126 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLS-NNKLSHIDFEFFYNLPNLQEVNLNKN-E---LTRIPRFGHESG-H 126 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecc-ccccccCcHHHHhcCCcceeeeeccc-h---hhhccccccccc-c
Confidence 34445555554443311 1 122334556666 33466666666667777777777766 4 666665555554 6
Q ss_pred ccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHh---ccccccccccCcc-----ccCCCccccccccc
Q 039821 317 LELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLIS---NSSRDTTSVIDAT-----AFADLNHLNELWID 387 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~---~l~~L~L~~~~~~-----~l~~l~~L~~L~l~ 387 (555)
|+.|+|.+|.|.++.. ++..++.|+.|||+.| .+..+|...+. ++..|.|....++ .|.++.+|-.|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 7777777666666644 5666666666666666 45555433221 1222222222221 23334444444443
Q ss_pred cccccceeeecccc--------------cccc-cccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcch
Q 039821 388 RAKELELLKIDYTE--------------IVRK-RREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAME 450 (555)
Q Consensus 388 ~~~~l~~l~~~~~~--------------~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~ 450 (555)
.+ .++.+|..... +.-. ......+++|+.|.+..+ ++..+. .+-.+.++++|+|+.|.. .
T Consensus 206 rN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l-~ 282 (873)
T KOG4194|consen 206 RN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRL-Q 282 (873)
T ss_pred cC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchh-h
Confidence 32 12222221110 0000 000003444444444443 222111 223455556666555532 2
Q ss_pred hhhccCcccccccccCCCCCCcccceeecCcccccccccc-cccCCCCcceEEEcCCCCCCccCCCCCc-cc-ccceEEe
Q 039821 451 EIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYW-KPLPFTHLKEMVVRGCDQLEKLPLDSNS-AK-ERKFVIR 527 (555)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~~~~L~~L~l~~C~~L~~lp~~~~~-~~-L~~l~i~ 527 (555)
.+-. +.+-++.+|+.|++++. .+..+.. .-...++|+.|+++. .++++|+.+.-. ++ |+++.++
T Consensus 283 ~vn~-----------g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 283 AVNE-----------GWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred hhhc-----------ccccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhccc
Confidence 2211 23456778888888873 4444422 223467888888876 677887775543 33 7777776
Q ss_pred c
Q 039821 528 G 528 (555)
Q Consensus 528 ~ 528 (555)
.
T Consensus 350 ~ 350 (873)
T KOG4194|consen 350 H 350 (873)
T ss_pred c
Confidence 4
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=6.3e-12 Score=134.38 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=86.2
Q ss_pred EEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccc
Q 039821 224 VCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSN 303 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 303 (555)
.....++..+|.. -..+++.|.+.+|.+..++... ..+|++|++++|. +..+|... ..+|+.|++++| . +
T Consensus 184 ~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N-~---L 253 (754)
T PRK15370 184 RLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ-LTSIPATL---PDTIQEMELSIN-R---I 253 (754)
T ss_pred EeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc-cccCChhh---hccccEEECcCC-c---c
Confidence 3344455555542 2357888999998888776542 3689999998654 77777653 247899999988 5 7
Q ss_pred cccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchH
Q 039821 304 FQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 304 ~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
..+|..+. .+|++|++++|++..+|..+. .+|++|++++| .+..+|..
T Consensus 254 ~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~ 301 (754)
T PRK15370 254 TELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH 301 (754)
T ss_pred CcCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc
Confidence 78887664 389999999999998887664 58999999998 67778764
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2e-12 Score=138.21 Aligned_cols=240 Identities=17% Similarity=0.204 Sum_probs=161.6
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELL 320 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L 320 (555)
+...|.+.+..+..+|.. -.++|+.|++.+| .+..+|...+ .+|++|++++| . +..+|..+. ++|+.|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~---LtsLP~~l~---~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-Q---LTSIPATLP---DTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-c---cccCChhhh---ccccEE
Confidence 456778887777776653 1357999999965 5778887643 58999999999 6 778887654 489999
Q ss_pred EcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCC--Cccccccccccccccceeeec
Q 039821 321 DISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFAD--LNHLNELWIDRAKELELLKID 398 (555)
Q Consensus 321 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~--l~~L~~L~l~~~~~l~~l~~~ 398 (555)
++++|.+..+|..+. .+|+.|++++| .+..+|..+...|..|.++......+.. .++|+.|+++++ .++.++.
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N-~Lt~LP~- 321 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSN-SLTALPE- 321 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCC-ccccCCc-
Confidence 999999999998764 68999999988 6788887633344444444433333221 134666666654 2332221
Q ss_pred ccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceee
Q 039821 399 YTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLR 478 (555)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 478 (555)
. ..++|+.|++.+| .++.+|. ...++|+.|++++|. +..+|. .+ .++|+.|+
T Consensus 322 ---------~--l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~------------~l--p~~L~~Ld 373 (754)
T PRK15370 322 ---------T--LPPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKNQ-ITVLPE------------TL--PPTITTLD 373 (754)
T ss_pred ---------c--ccccceeccccCC-ccccCCh-hhcCcccEEECCCCC-CCcCCh------------hh--cCCcCEEE
Confidence 1 2468888998888 4555542 123789999999884 333322 22 35889999
Q ss_pred cCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCcc----c-ccceEEech
Q 039821 479 LSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSA----K-ERKFVIRGE 529 (555)
Q Consensus 479 l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~----~-L~~l~i~~~ 529 (555)
+++| ++..+|.... ..|+.|+++++ +|..+|...... . +..+.+.++
T Consensus 374 Ls~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 374 VSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 9986 6777775432 46888888884 678887644321 2 566777765
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=3.5e-14 Score=118.11 Aligned_cols=117 Identities=24% Similarity=0.423 Sum_probs=53.5
Q ss_pred CCCCccCccceeEeeccccccccccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH
Q 039821 232 EAPDVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM 310 (555)
Q Consensus 232 ~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~ 310 (555)
.++....++++.+|.++++.+..++.. ..+.+|++|.+. ++.++.+|.+ +..+++||.|++.-| . +..+|.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn-r---l~~lprgf 98 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN-R---LNILPRGF 98 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh-h---hhcCcccc
Confidence 344445555666666666655544332 444444444444 2334444443 344444444444444 3 34444444
Q ss_pred hhhhccccEEEcCCCCCc--ccchhhhCCCCCcEEccCCCccccccch
Q 039821 311 SELGSSLELLDISHTSIR--ELPEELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 311 ~~l~~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
|.++ -|+.||+.++++. .+|-.+..++.|+.|.++.| ..+.+|+
T Consensus 99 gs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~ 144 (264)
T KOG0617|consen 99 GSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPP 144 (264)
T ss_pred CCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCCh
Confidence 4444 4444444444332 23444444444444444444 3344444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=2.5e-11 Score=129.10 Aligned_cols=229 Identities=20% Similarity=0.168 Sum_probs=150.9
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcc
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWS 302 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 302 (555)
+......+..+|. ...+++.|++.+|.+..++.. .++|+.|++.+|. +..++.. ..+|+.|++++| .
T Consensus 227 L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~-L~~Lp~l----p~~L~~L~Ls~N-~--- 293 (788)
T PRK15387 227 LVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNP-LTHLPAL----PSGLCKLWIFGN-Q--- 293 (788)
T ss_pred EEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc--ccccceeeccCCc-hhhhhhc----hhhcCEEECcCC-c---
Confidence 3444445555554 347899999999999888754 4789999998664 6666542 356888999988 6
Q ss_pred ccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCC-Cccc
Q 039821 303 NFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFAD-LNHL 381 (555)
Q Consensus 303 ~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~-l~~L 381 (555)
+..+|.. . ++|++|++++|.++.+|.. ..+|+.|++++| .+..+|.. ..+|..|.|+...+..++. ..+|
T Consensus 294 Lt~LP~~---p-~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l-p~~Lq~LdLS~N~Ls~LP~lp~~L 364 (788)
T PRK15387 294 LTSLPVL---P-PGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPTL-PSGLQELSVSDNQLASLPTLPSEL 364 (788)
T ss_pred ccccccc---c-cccceeECCCCccccCCCC---cccccccccccC-cccccccc-ccccceEecCCCccCCCCCCCccc
Confidence 7777753 2 4899999999999888763 345777788887 56777752 4455555555554444433 2356
Q ss_pred cccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccccc
Q 039821 382 NELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEV 461 (555)
Q Consensus 382 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 461 (555)
+.|+++++ .+..++ . .+.+|+.|++++| .++.+|.. .++|+.|++++|. +..+|.
T Consensus 365 ~~L~Ls~N-~L~~LP----------~---l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~------- 419 (788)
T PRK15387 365 YKLWAYNN-RLTSLP----------A---LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM------- 419 (788)
T ss_pred ceehhhcc-ccccCc----------c---cccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc-------
Confidence 66666554 233222 1 2356888888887 45555532 4678888888874 333322
Q ss_pred ccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCC
Q 039821 462 PEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCD 507 (555)
Q Consensus 462 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~ 507 (555)
.+.+|+.|++++ ++++.+|..+..+++|+.|++++++
T Consensus 420 --------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 --------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 124577777777 4677777777777888888887754
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-13 Score=114.05 Aligned_cols=156 Identities=21% Similarity=0.324 Sum_probs=78.2
Q ss_pred ccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhh
Q 039821 255 LSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEEL 334 (555)
Q Consensus 255 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i 334 (555)
++.+..+.+...|.++.+ .+..+|+. +..+.+|++|++.+| . +..+|.++..++ +|+.|+++-+++..+|.++
T Consensus 26 ~~gLf~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nn-q---ie~lp~~issl~-klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNN-Q---IEELPTSISSLP-KLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccccchhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccc-h---hhhcChhhhhch-hhhheecchhhhhcCcccc
Confidence 333344445555555533 24444444 455555555555555 4 555555555555 5555555555555555555
Q ss_pred hCCCCCcEEccCCCcccc--ccchHHHhccccccccccCccccCCCccccccccccccccceeeeccccccccccccccc
Q 039821 335 KKLVNLKCLNLRRTELLN--KIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVF 412 (555)
Q Consensus 335 ~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 412 (555)
+.++-|+.||+.+| ++. .+|. .|..++.|+.|+++++ ..+.+|.+.. .+
T Consensus 99 gs~p~levldltyn-nl~e~~lpg-----------------nff~m~tlralyl~dn-dfe~lp~dvg----------~l 149 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPG-----------------NFFYMTTLRALYLGDN-DFEILPPDVG----------KL 149 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCc-----------------chhHHHHHHHHHhcCC-CcccCChhhh----------hh
Confidence 55555555555554 221 2343 2333455555555443 3333333332 45
Q ss_pred ccccEEEEeecCCCCcccccccCCCCceEEeecC
Q 039821 413 RSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHC 446 (555)
Q Consensus 413 ~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~ 446 (555)
.+|+.|.+..+.-++.+..++.+..|++|.+.++
T Consensus 150 t~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 150 TNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 5555555555544444445555555555555544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.17 E-value=6e-12 Score=130.44 Aligned_cols=251 Identities=21% Similarity=0.236 Sum_probs=151.8
Q ss_pred ceeEeeccccccccccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccE
Q 039821 241 NVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLEL 319 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~ 319 (555)
++.+|+++++.+...|.. ..+.+|+.|.++ ++.+...|.+ ...+.+|++|.|.+| . ...+|.++..+. +|++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s-~n~i~~vp~s-~~~~~~l~~lnL~~n-~---l~~lP~~~~~lk-nl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLS-RNYIRSVPSS-CSNMRNLQYLNLKNN-R---LQSLPASISELK-NLQY 118 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccc-hhhHhhCchh-hhhhhcchhheeccc-h---hhcCchhHHhhh-cccc
Confidence 478888888888776654 778888888888 4447677654 678889999999888 6 888899999988 9999
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHH------------------Hhcccc-ccccccCcc--ccCCC
Q 039821 320 LDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQL------------------ISNSSR-DTTSVIDAT--AFADL 378 (555)
Q Consensus 320 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~------------------i~~l~~-L~L~~~~~~--~l~~l 378 (555)
|++++|.+..+|.-+..++.+..++.++|..+..++... +..+.. |.|...... .+..+
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhc
Confidence 999999888888777777777777766664444444321 222222 111111111 22333
Q ss_pred ccccccccccc---------cccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcc
Q 039821 379 NHLNELWIDRA---------KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAM 449 (555)
Q Consensus 379 ~~L~~L~l~~~---------~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~ 449 (555)
++|+.|....+ ..++.+..+.+........+ ...+|++++++.+.....+.|++.+.+|+.|.+..|..
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l- 276 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL- 276 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeecccc-ccccceeeecchhhhhcchHHHHhcccceEecccchhH-
Confidence 34443332211 12222322322222111222 56688888888874444455888899999998887743
Q ss_pred hhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCC
Q 039821 450 EEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPL 514 (555)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~ 514 (555)
..++. .+....+|+.|.+.+| .++.+|.....+++|+.|++.. .+|.++|.
T Consensus 277 ~~lp~------------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 277 VALPL------------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred HhhHH------------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccch
Confidence 33332 3334455555555553 4555555555556666666654 45555554
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=127.07 Aligned_cols=277 Identities=21% Similarity=0.272 Sum_probs=176.7
Q ss_pred EEEEcCCCCCCCCCccCccceeEeeccccc--cccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQ--IETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 297 (555)
.++........++.....++++.|.+..+. ...++. +..++.|++|++++|.....+|.. ++.+-+||||+++++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344444444445555555579999998886 555555 588999999999998888888887 899999999999999
Q ss_pred CCCccccccChhHhhhhccccEEEcCCCC-CcccchhhhCCCCCcEEccCCCc-cccccchHHHhccccc-cccccC---
Q 039821 298 GKSWSNFQLPVGMSELGSSLELLDISHTS-IRELPEELKKLVNLKCLNLRRTE-LLNKIPRQLISNSSRD-TTSVID--- 371 (555)
Q Consensus 298 ~~~~~~~~lp~~~~~l~~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~-~l~~lp~~~i~~l~~L-~L~~~~--- 371 (555)
. +.++|.+++++. .|.+|++..+. +..+|.....|.+|++|.+.... .....--+.+.+|.+| .++...
T Consensus 606 -~---I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 606 -G---ISHLPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred -C---ccccchHHHHHH-hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 6 889999999999 99999999995 44455555569999999987653 1111100012233333 111110
Q ss_pred -----------------------------ccccCCCccccccccccccccceee-------ec------------ccccc
Q 039821 372 -----------------------------ATAFADLNHLNELWIDRAKELELLK-------ID------------YTEIV 403 (555)
Q Consensus 372 -----------------------------~~~l~~l~~L~~L~l~~~~~l~~l~-------~~------------~~~~~ 403 (555)
+..++.+.+|+.|.|.+|...+... .. .....
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 1134567888888888886543110 00 00001
Q ss_pred cccccccccccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcc
Q 039821 404 RKRREPFVFRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHL 482 (555)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 482 (555)
..+......++|+.|.+..|..+.++ +....+..++++.+..+. +.... +....+.|+++..+.+.+.
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~----------~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR----------MLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce----------eeecCCCCceeEecccCcc
Confidence 11222236789999999999888775 455556666654444332 11110 1224455555555555552
Q ss_pred cccccccccc----cCCCCcceEEEcCC-CCCCccCCCC
Q 039821 483 PNLKSIYWKP----LPFTHLKEMVVRGC-DQLEKLPLDS 516 (555)
Q Consensus 483 ~~L~~l~~~~----~~~~~L~~L~l~~C-~~L~~lp~~~ 516 (555)
.++.+.... ..+|.+.++.+.+| +++..+|...
T Consensus 830 -~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 830 -KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred -chhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 254444333 45688888999997 8999999863
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=2.8e-10 Score=107.40 Aligned_cols=138 Identities=26% Similarity=0.311 Sum_probs=85.3
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccCC--CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+.++.++|.. -+.....+.+..|.+..+|.. ..+++||.|+|+ .+.++.|.+.+|.++..|-.|-+.++.
T Consensus 49 ~~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3444555566665532 224556677777777776654 677777777777 334777777777777777666666532
Q ss_pred CCccccccChh-HhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 299 KSWSNFQLPVG-MSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 299 ~~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
. +..+|.. ++.+. .|+.|.+.-+.+.-++. .+..|++|..|.+..| .++.++.+.+..+..+
T Consensus 127 k---I~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 127 K---ITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAI 190 (498)
T ss_pred c---hhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhcc
Confidence 5 6777654 44555 77777777776666655 4666777777777666 4555655434444433
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=6.9e-10 Score=104.79 Aligned_cols=118 Identities=23% Similarity=0.317 Sum_probs=89.2
Q ss_pred cceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcCC-CCCcccch-hhhCCCC
Q 039821 263 HLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDISH-TSIRELPE-ELKKLVN 339 (555)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~~-~~i~~lp~-~i~~L~~ 339 (555)
.-..+.+. .+.+..+|+.+|+.+++||.|+|+.| . +..+ |..|..+. .|-.|-+-+ |+|+.+|. .++.|..
T Consensus 68 ~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N-~---Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKN-N---ISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cceEEEec-cCCcccCChhhccchhhhceeccccc-c---hhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 34567777 44599999999999999999999999 5 5554 77888888 655555544 89999998 6889999
Q ss_pred CcEEccCCCccccccchHHHhccccc-cccccC--cc-----ccCCCccccccccc
Q 039821 340 LKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT-----AFADLNHLNELWID 387 (555)
Q Consensus 340 L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~-----~l~~l~~L~~L~l~ 387 (555)
|+.|.+.-| .+.-++...+..|.+| .|+..+ .. .|..+..++++.+.
T Consensus 142 lqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 999999888 5777887778888877 444433 11 45667777777554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=9.1e-10 Score=108.75 Aligned_cols=104 Identities=23% Similarity=0.193 Sum_probs=56.1
Q ss_pred ceeEeecccccccc-----cc-CCCCCCcceEEEcccCcchhc------cchhHhccCCcccEEEecCCCCCccccccCh
Q 039821 241 NVRRLSLMQNQIET-----LS-EVPTCPHLLTLFLDFNEDVEM------IADGFFQFMPSLKVLKMSNCGKSWSNFQLPV 308 (555)
Q Consensus 241 ~l~~L~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~ 308 (555)
+++.+.+.++.+.. +. .....+.++.+.+.++. +.. .....+..+++|+.|++++|.. ....+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~ 99 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL---GPDGCG 99 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCC---ChhHHH
Confidence 35556665555421 11 12455566677666543 221 1112355567777777777733 223444
Q ss_pred hHhhhhcc---ccEEEcCCCCCcc-----cchhhhCC-CCCcEEccCCCc
Q 039821 309 GMSELGSS---LELLDISHTSIRE-----LPEELKKL-VNLKCLNLRRTE 349 (555)
Q Consensus 309 ~~~~l~~~---L~~L~l~~~~i~~-----lp~~i~~L-~~L~~L~l~~~~ 349 (555)
.+..+. . |++|++++|.+.. +...+..+ ++|+.|++++|.
T Consensus 100 ~~~~l~-~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 100 VLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHh-ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 555554 4 7777777776652 22344555 677777777773
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-09 Score=104.32 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=94.9
Q ss_pred CCCCcceEEEcccCcchhccch-hHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchh--hh
Q 039821 259 PTCPHLLTLFLDFNEDVEMIAD-GFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEE--LK 335 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~--i~ 335 (555)
.++++|+.+.+..+ .+...+. +....+++++.|+|+.| --++...+-..+.+++ +|+.|+++.|.+.....+ -.
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcc-cchhcccccccccCCccccchh
Confidence 44555555555532 2333221 23455666666666666 3222333334444554 666666666655443321 22
Q ss_pred CCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccc
Q 039821 336 KLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSL 415 (555)
Q Consensus 336 ~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 415 (555)
.+..|+.|.+++| .+. ... +..+ +..+|+|+.|.+..++....-..+.. .+..|
T Consensus 195 ~l~~lK~L~l~~C-Gls--~k~-V~~~------------~~~fPsl~~L~L~~N~~~~~~~~~~~----------i~~~L 248 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLS--WKD-VQWI------------LLTFPSLEVLYLEANEIILIKATSTK----------ILQTL 248 (505)
T ss_pred hhhhhheEEeccC-CCC--HHH-HHHH------------HHhCCcHHHhhhhcccccceecchhh----------hhhHH
Confidence 4566666666666 222 111 2111 23456666666665532211111110 45667
Q ss_pred cEEEEeecCCCCcc--cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccc
Q 039821 416 HCVTIHICQKLKDT--TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIY 489 (555)
Q Consensus 416 ~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 489 (555)
+.|+|+++..+... +..+.+|.|+.|+++.|..-.--.+++ +..+....|++|++|++... +...|+
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~------~s~~kt~~f~kL~~L~i~~N-~I~~w~ 317 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV------ESLDKTHTFPKLEYLNISEN-NIRDWR 317 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCc------cchhhhcccccceeeecccC-cccccc
Confidence 77777777555443 456677777777777764322111100 00112346777777777663 444343
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.77 E-value=3.4e-09 Score=104.68 Aligned_cols=235 Identities=20% Similarity=0.157 Sum_probs=126.0
Q ss_pred ceeEeecccccccc--------ccCCCCCCcceEEEcccCcchhccchhHhccCC---cccEEEecCCCCC-ccccccCh
Q 039821 241 NVRRLSLMQNQIET--------LSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMP---SLKVLKMSNCGKS-WSNFQLPV 308 (555)
Q Consensus 241 ~l~~L~l~~~~~~~--------l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~-~~~~~lp~ 308 (555)
.++++.+.++.+.. ......+++|+.|+++++.. .......+..+. +|+.|++++|... .....+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL-GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC-ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 45566665544431 11235578999999986653 322222344444 4999999988431 00112334
Q ss_pred hHhhhhccccEEEcCCCCCc-----ccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccc
Q 039821 309 GMSELGSSLELLDISHTSIR-----ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNE 383 (555)
Q Consensus 309 ~~~~l~~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~ 383 (555)
.+..+.++|+.|++++|.++ .++..+..+.+|++|++++|. +..-....+. ..+..+++|+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~------------~~l~~~~~L~~ 197 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA------------EGLKANCNLEV 197 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH------------HHHHhCCCCCE
Confidence 55555238999999999887 344556777899999999983 4321000010 01344567888
Q ss_pred cccccccccceeeecccccccccccccccccccEEEEeecCCCCc--ccccc-----cCCCCceEEeecCCcchhhhccC
Q 039821 384 LWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD--TTFLV-----FAPNLKSLSLFHCGAMEEIISVG 456 (555)
Q Consensus 384 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~ 456 (555)
|++++|. +..... ..+...+..+++|+.|++++|. ++. +..+. ..+.|++|++++|.......
T Consensus 198 L~L~~n~-i~~~~~-----~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--- 267 (319)
T cd00116 198 LDLNNNG-LTDEGA-----SALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--- 267 (319)
T ss_pred EeccCCc-cChHHH-----HHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH---
Confidence 8887763 211110 0011112256788888888873 332 11111 23788888888875321110
Q ss_pred cccccccccCCCCCCcccceeecCccccccccc-----ccccCC-CCcceEEEcC
Q 039821 457 KFAEVPEMMGHISPFENLRLLRLSHLPNLKSIY-----WKPLPF-THLKEMVVRG 505 (555)
Q Consensus 457 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~-----~~~~~~-~~L~~L~l~~ 505 (555)
..+...+..+++|++++++++ .+...+ .....+ +.|+++++.+
T Consensus 268 -----~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 268 -----KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred -----HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 001113344577888888774 333221 112223 5666666654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=3.8e-08 Score=85.94 Aligned_cols=108 Identities=29% Similarity=0.384 Sum_probs=41.8
Q ss_pred CccCccceeEeeccccccccccCCC-CCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHh-h
Q 039821 235 DVKGWENVRRLSLMQNQIETLSEVP-TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMS-E 312 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~-~ 312 (555)
...+..+.+.|++.++.+..+.... .+.+|+.|++++|. +..+.. +..+++|++|++++| . +..+.+.+. .
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N-~---I~~i~~~l~~~ 86 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNN-R---ISSISEGLDKN 86 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS-------S-CHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCC-C---CCccccchHHh
Confidence 3344457899999999999998886 68999999999554 766654 778999999999999 6 778876664 4
Q ss_pred hhccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCcc
Q 039821 313 LGSSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTEL 350 (555)
Q Consensus 313 l~~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~ 350 (555)
++ +|+.|++++|+|.++.. .+..+++|++|++.+|+.
T Consensus 87 lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 87 LP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 66 99999999999887654 577899999999999953
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-09 Score=97.45 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=35.6
Q ss_pred HhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCC-CCcccch--hhhCCCCCcEEccCCC
Q 039821 282 FFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHT-SIRELPE--ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 282 ~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~-~i~~lp~--~i~~L~~L~~L~l~~~ 348 (555)
.+..+.+|+.|++.|+.- ...+...|.+-. +|+.|+++.| ++++... -+.+++.|..|+++.|
T Consensus 205 iLs~C~kLk~lSlEg~~L---dD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL---DDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHHHhhhhcccccccc---CcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 345566666666666643 334444555554 6666666666 4444322 2455666666666666
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=9.3e-09 Score=98.10 Aligned_cols=268 Identities=16% Similarity=0.191 Sum_probs=167.9
Q ss_pred cceeEeeccccccccccCC----CCCCcceEEEcccCcchhccchh-HhccCCcccEEEecCCCCCccccc--cChhHhh
Q 039821 240 ENVRRLSLMQNQIETLSEV----PTCPHLLTLFLDFNEDVEMIADG-FFQFMPSLKVLKMSNCGKSWSNFQ--LPVGMSE 312 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--lp~~~~~ 312 (555)
..++.|++.+........+ ..+++++.|.+.+|..+++..-. .-..+++|++|++..|.. ++. +-.-...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~---iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS---ITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch---hHHHHHHHHHHh
Confidence 3567777776554433332 67899999999988866554332 224578999999998843 332 2212233
Q ss_pred hhccccEEEcCCC-CCcc--cchhhhCCCCCcEEccCCCccccccchHHHhcccc----c-cccccCcccc---------
Q 039821 313 LGSSLELLDISHT-SIRE--LPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSR----D-TTSVIDATAF--------- 375 (555)
Q Consensus 313 l~~~L~~L~l~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~----L-~L~~~~~~~l--------- 375 (555)
.+ +|+||++++| .|++ +-.-.....+|+.+.++||. +++.+.+..+.. + .++...+..+
T Consensus 215 C~-kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 215 CR-KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hh-hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 44 9999999998 5554 22334456667888788884 334333322221 1 2222222211
Q ss_pred CCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc--cc-ccCCCCceEEeecCCcchhh
Q 039821 376 ADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FL-VFAPNLKSLSLFHCGAMEEI 452 (555)
Q Consensus 376 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l-~~l~~L~~L~l~~~~~~~~~ 452 (555)
.....|+.|..++|.......+..-.. ...+|+.|-+++|..+++.- .+ .+.+.|+.+++.+|....+.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~--------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQ--------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhc--------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 235667777777776655443332211 56889999999887766532 23 36788889988888654442
Q ss_pred hccCcccccccccCCCCCCcccceeecCcccccccc-----cccccCCCCcceEEEcCCCCCCccCCCCCccc--ccceE
Q 039821 453 ISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI-----YWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK--ERKFV 525 (555)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-----~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~--L~~l~ 525 (555)
.+..-..+++.|+.|.+++|...+.- ......+..|+.+.+.+||.++.--++..... |+.++
T Consensus 363 ----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 363 ----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 12223457899999999988766543 23345678899999999999877555444332 88999
Q ss_pred Eechhhh
Q 039821 526 IRGEEDW 532 (555)
Q Consensus 526 i~~~~~~ 532 (555)
+.+|..+
T Consensus 433 l~~~q~v 439 (483)
T KOG4341|consen 433 LIDCQDV 439 (483)
T ss_pred eechhhh
Confidence 9888554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=3.4e-09 Score=104.70 Aligned_cols=113 Identities=25% Similarity=0.360 Sum_probs=78.1
Q ss_pred eEeeccccccccccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~ 321 (555)
...+++.|....++.- ..|..|..+.+..+. +..+|.. ++.+..|.+|+++.| . +..+|..++.+ -|+.|-
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~-i~~L~~lt~l~ls~N-q---lS~lp~~lC~l--pLkvli 149 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEA-ICNLEALTFLDLSSN-Q---LSHLPDGLCDL--PLKVLI 149 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchh-hhhhhHHHHhhhccc-h---hhcCChhhhcC--cceeEE
Confidence 3445555666555543 455666666666443 5555554 677788888888887 5 77788888877 588888
Q ss_pred cCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 322 ISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 322 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
+++|+++.+|..|+-+..|.+||.+.| .+..+|.. ++.+..|
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~sl 191 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSL 191 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHH
Confidence 888888888888887778888888887 67777775 4444433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.9e-08 Score=91.83 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=91.8
Q ss_pred HhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 310 MSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 310 ~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
+.... .|+.+||++|.|+.+..++.-+++++.|++++| .+..+.. +..+++|+.|+++++
T Consensus 280 ~dTWq-~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n------------------La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 280 ADTWQ-ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN------------------LAELPQLQLLDLSGN 339 (490)
T ss_pred cchHh-hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh------------------hhhcccceEeecccc
Confidence 33444 899999999999999999988999999999998 4444432 356677777777765
Q ss_pred cccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCC
Q 039821 390 KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHIS 469 (555)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 469 (555)
.+..+.- |. ..+-|.++|.+.++ .+.++..++.+-+|..|++++|+ ++.+.. ...++
T Consensus 340 -~Ls~~~G-wh---------~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~lde----------V~~IG 396 (490)
T KOG1259|consen 340 -LLAECVG-WH---------LKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDE----------VNHIG 396 (490)
T ss_pred -hhHhhhh-hH---------hhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHH----------hcccc
Confidence 2322211 11 16778888888887 66777777788888888888874 333211 23577
Q ss_pred CCcccceeecCccc
Q 039821 470 PFENLRLLRLSHLP 483 (555)
Q Consensus 470 ~~~~L~~L~l~~~~ 483 (555)
++|.|+.+.+.+.|
T Consensus 397 ~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 397 NLPCLETLRLTGNP 410 (490)
T ss_pred cccHHHHHhhcCCC
Confidence 88888888887743
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=1.1e-07 Score=96.68 Aligned_cols=90 Identities=30% Similarity=0.418 Sum_probs=48.0
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCC-cccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMP-SLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKL 337 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L 337 (555)
.....+..|.+..+ .+..+++. ...+. +|+.|+++.+ . +..+|..++.++ +|+.|++++|++.++|...+.+
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~---i~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-K---IESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hcccceeEEecCCc-ccccCccc-cccchhhccccccccc-c---hhhhhhhhhccc-cccccccCCchhhhhhhhhhhh
Confidence 34455555555522 34444442 22332 5666666655 4 555555555555 6666666666666666555455
Q ss_pred CCCcEEccCCCccccccch
Q 039821 338 VNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 338 ~~L~~L~l~~~~~l~~lp~ 356 (555)
.+|+.|+++++ .+..+|.
T Consensus 186 ~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred hhhhheeccCC-ccccCch
Confidence 66666666665 4555555
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=2.6e-07 Score=80.80 Aligned_cols=122 Identities=28% Similarity=0.340 Sum_probs=56.0
Q ss_pred EEEEcCCCCCCCCCcc-CccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 222 FLVCAGAGLNEAPDVK-GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
.+...+.....+.... ...+++.|++++|.+..+..+..+++|++|+++++. +..+.......+++|+.|++++| ..
T Consensus 23 ~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N-~I 100 (175)
T PF14580_consen 23 ELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN-KI 100 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred cccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC-cC
Confidence 3444555555554444 356899999999999999999999999999999554 77776553456899999999999 51
Q ss_pred ccccccChhHhhhhccccEEEcCCCCCcccch----hhhCCCCCcEEccCC
Q 039821 301 WSNFQLPVGMSELGSSLELLDISHTSIRELPE----ELKKLVNLKCLNLRR 347 (555)
Q Consensus 301 ~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~ 347 (555)
.++..+ ..+..++ +|++|++.+|.+.+.+. -+..+++|+.||-..
T Consensus 101 ~~l~~l-~~L~~l~-~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 101 SDLNEL-EPLSSLP-KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -SCCCC-GGGGG-T-T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CChHHh-HHHHcCC-CcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 122222 4566776 99999999999988765 377899999999644
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=1.4e-07 Score=96.10 Aligned_cols=69 Identities=30% Similarity=0.444 Sum_probs=60.4
Q ss_pred hccCCcccEEEecCCCCCccccccChhHhhh-hccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchH
Q 039821 283 FQFMPSLKVLKMSNCGKSWSNFQLPVGMSEL-GSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 283 ~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l-~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
...+..+..|++.++ . +..+|...+.+ . +|+.|+++++.+..+|..++.+++|+.|+++.| .+..+|..
T Consensus 112 ~~~~~~l~~L~l~~n-~---i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~ 181 (394)
T COG4886 112 LLELTNLTSLDLDNN-N---ITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL 181 (394)
T ss_pred hhcccceeEEecCCc-c---cccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh
Confidence 455678999999999 6 88888877776 4 899999999999999988999999999999999 68888874
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.1e-06 Score=86.40 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=18.9
Q ss_pred ccccEEEEeecCCCCcccccccCCCCceEEeecC
Q 039821 413 RSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHC 446 (555)
Q Consensus 413 ~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~ 446 (555)
++|+.|.+.+|.....++.+ ..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 56777777777654433222 257777777654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.8e-08 Score=93.29 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=123.0
Q ss_pred ccCCcccEEEecCCCCCccccccC--hhHhhhhccccEEEcCCCCCccc---chhhhCCCCCcEEccCCCccccccchHH
Q 039821 284 QFMPSLKVLKMSNCGKSWSNFQLP--VGMSELGSSLELLDISHTSIREL---PEELKKLVNLKCLNLRRTELLNKIPRQL 358 (555)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~lp--~~~~~l~~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~ 358 (555)
.++++|+...|+++ . +...+ .-...++ +++.|||++|-+.+. -+-+..|++|+.|+++.|. +.....+
T Consensus 118 sn~kkL~~IsLdn~-~---V~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-R---VEDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISS- 190 (505)
T ss_pred hhHHhhhheeecCc-c---ccccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccc-
Confidence 56889999999998 4 44444 2455666 999999999966543 3346789999999999994 3332221
Q ss_pred HhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCc-ccccccCCC
Q 039821 359 ISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD-TTFLVFAPN 437 (555)
Q Consensus 359 i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~l~~l~~ 437 (555)
. .-..+++|+.|.++.| .+..-++.+... .+|+|+.|++..|..... -.....+..
T Consensus 191 ---~-----------~~~~l~~lK~L~l~~C-Gls~k~V~~~~~--------~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 191 ---N-----------TTLLLSHLKQLVLNSC-GLSWKDVQWILL--------TFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred ---c-----------chhhhhhhheEEeccC-CCCHHHHHHHHH--------hCCcHHHhhhhcccccceecchhhhhhH
Confidence 0 1134678888888888 333333333322 799999999999853222 224456889
Q ss_pred CceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccc--c-----ccCCCCcceEEEcCC
Q 039821 438 LKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYW--K-----PLPFTHLKEMVVRGC 506 (555)
Q Consensus 438 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~--~-----~~~~~~L~~L~l~~C 506 (555)
|++|+|++|+.+..-.. ...+.||.|+.|.++.| .+.++-. . ...|++|+.|++..-
T Consensus 248 L~~LdLs~N~li~~~~~-----------~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQG-----------YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred HhhccccCCcccccccc-----------cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC
Confidence 99999999976653211 24678999999999875 4443321 1 345899999998763
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.5e-08 Score=88.85 Aligned_cols=185 Identities=18% Similarity=0.141 Sum_probs=119.3
Q ss_pred CcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcc-cchhhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 287 PSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRE-LPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
..|++|||++... ....+-.-+..+. +|+.|.+.+..+.+ +-..|.+=.+|+.|+++.|..+.......
T Consensus 185 sRlq~lDLS~s~i--t~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l------- 254 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI--TVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL------- 254 (419)
T ss_pred hhhHHhhcchhhe--eHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH-------
Confidence 3478888887632 1233444456666 89999999988764 44577888899999999996555443221
Q ss_pred cccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCC---ccc-ccccCCCCceE
Q 039821 366 TTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLK---DTT-FLVFAPNLKSL 441 (555)
Q Consensus 366 ~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~~~-~l~~l~~L~~L 441 (555)
-+.+++.|..|+|++|...+..-.... . .--++|+.|+++||...- .+. -...+|+|.+|
T Consensus 255 --------l~~scs~L~~LNlsWc~l~~~~Vtv~V------~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 255 --------LLSSCSRLDELNLSWCFLFTEKVTVAV------A--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred --------HHHhhhhHhhcCchHhhccchhhhHHH------h--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 245677777777777744332210000 0 024678889999885321 122 23468999999
Q ss_pred EeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc-cccccCCCCcceEEEcCCCC
Q 039821 442 SLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI-YWKPLPFTHLKEMVVRGCDQ 508 (555)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~~~~L~~L~l~~C~~ 508 (555)
+|++|..+.... ...+..|+.|++|.++.|..+.-- -......|+|.+|++.||-.
T Consensus 319 DLSD~v~l~~~~-----------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDC-----------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchH-----------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 999987666421 124567889999999988655311 11345679999999988743
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=4.6e-08 Score=96.91 Aligned_cols=189 Identities=20% Similarity=0.210 Sum_probs=107.2
Q ss_pred EEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEcc
Q 039821 266 TLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNL 345 (555)
Q Consensus 266 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 345 (555)
..+++.+. +..+|.. ++.+-.|..+.+..| . +..+|..++++. .|.+|+++.|++..+|..++.|+ |+.|-+
T Consensus 79 ~aDlsrNR-~~elp~~-~~~f~~Le~liLy~n-~---~r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEE-ACAFVSLESLILYHN-C---IRTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhccccc-cccCchH-HHHHHHHHHHHHHhc-c---ceecchhhhhhh-HHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 34444332 4444444 455556666666655 4 666777777776 77777777777777777666554 667777
Q ss_pred CCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCC
Q 039821 346 RRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQK 425 (555)
Q Consensus 346 ~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 425 (555)
++| ++..+|.. ++.++.|..|+.+.| .+..++.... .+.+|+.|.+..+.-
T Consensus 151 sNN-kl~~lp~~-----------------ig~~~tl~~ld~s~n-ei~slpsql~----------~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 151 SNN-KLTSLPEE-----------------IGLLPTLAHLDVSKN-EIQSLPSQLG----------YLTSLRDLNVRRNHL 201 (722)
T ss_pred ecC-ccccCCcc-----------------cccchhHHHhhhhhh-hhhhchHHhh----------hHHHHHHHHHhhhhh
Confidence 666 56666664 344555555655554 3333333332 566777777776654
Q ss_pred CCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccccccc---CCCCcceEE
Q 039821 426 LKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPL---PFTHLKEMV 502 (555)
Q Consensus 426 l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~---~~~~L~~L~ 502 (555)
+..++.+.. =.|..|++++| ++..+|- .+..+.+|++|.|.+ +-|.+-|..++ ..--.++|+
T Consensus 202 ~~lp~El~~-LpLi~lDfScN-kis~iPv------------~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 202 EDLPEELCS-LPLIRLDFSCN-KISYLPV------------DFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred hhCCHHHhC-CceeeeecccC-ceeecch------------hhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeec
Confidence 444555553 34666676644 3333332 566667777777765 34555443322 223345666
Q ss_pred EcCC
Q 039821 503 VRGC 506 (555)
Q Consensus 503 l~~C 506 (555)
+.-|
T Consensus 267 ~qA~ 270 (722)
T KOG0532|consen 267 TQAC 270 (722)
T ss_pred chhc
Confidence 6666
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=7.6e-07 Score=63.63 Aligned_cols=56 Identities=34% Similarity=0.563 Sum_probs=33.4
Q ss_pred cccEEEecCCCCCccccccCh-hHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCC
Q 039821 288 SLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 348 (555)
+|++|++++| . +..+|+ .+..+. +|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~---l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-K---LTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-T---ESEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-C---CCccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666666666 4 555554 334444 66666666666666654 4566666666666665
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=6.8e-07 Score=81.88 Aligned_cols=101 Identities=34% Similarity=0.405 Sum_probs=55.9
Q ss_pred cceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccE
Q 039821 240 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLEL 319 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~ 319 (555)
+++|+|.+++|.+..+..+..+++|+.|+++++. +..+. ++-.++.|++.|.+.+| . +..+ .+++++. .|.+
T Consensus 307 Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~-Gwh~KLGNIKtL~La~N-~---iE~L-SGL~KLY-SLvn 378 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAECV-GWHLKLGNIKTLKLAQN-K---IETL-SGLRKLY-SLVN 378 (490)
T ss_pred cceeEEeccccceeeehhhhhcccceEeecccch-hHhhh-hhHhhhcCEeeeehhhh-h---Hhhh-hhhHhhh-hhee
Confidence 4556666666665555555566666666666443 22221 11234555666666655 3 3333 4556666 6666
Q ss_pred EEcCCCCCcccch--hhhCCCCCcEEccCCC
Q 039821 320 LDISHTSIRELPE--ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 320 L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~ 348 (555)
||+++|+|+.+.. +||+|+.|+++.+.+|
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 6666666666544 5666666666666666
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.1e-06 Score=61.27 Aligned_cols=60 Identities=32% Similarity=0.478 Sum_probs=47.8
Q ss_pred CcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEcCCCCC
Q 039821 262 PHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISHTSI 327 (555)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i 327 (555)
++|++|++.+| .+..+++.+|..+++|++|++++| . +..+|+ .+..++ +|++|++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~---l~~i~~~~f~~l~-~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-N---LTSIPPDAFSNLP-NLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-S---ESEEETTTTTTST-TESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-c---cCccCHHHHcCCC-CCCEEeCcCCcC
Confidence 46888888865 588888888888999999999988 5 667754 556776 999999988864
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.9e-06 Score=55.50 Aligned_cols=40 Identities=43% Similarity=0.633 Sum_probs=31.3
Q ss_pred cccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccch
Q 039821 316 SLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
+|++|++++|+|+++|..+++|++|++|++++| .+..+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 788888888888888888888888888888888 5666664
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=1.4e-05 Score=85.69 Aligned_cols=90 Identities=27% Similarity=0.376 Sum_probs=74.5
Q ss_pred cceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCc-ccchhhhCCCCCc
Q 039821 263 HLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIR-ELPEELKKLVNLK 341 (555)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~-~lp~~i~~L~~L~ 341 (555)
.++.|++.++.....+|. .+..+++|+.|+|++|.. ...+|..++.+. +|+.|+|++|.+. .+|..++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSI---RGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcc---cCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 477888886553334454 488999999999999944 458899999998 9999999999987 6788999999999
Q ss_pred EEccCCCccccccchH
Q 039821 342 CLNLRRTELLNKIPRQ 357 (555)
Q Consensus 342 ~L~l~~~~~l~~lp~~ 357 (555)
+|++++|.....+|..
T Consensus 494 ~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 494 ILNLNGNSLSGRVPAA 509 (623)
T ss_pred EEECcCCcccccCChH
Confidence 9999999766688875
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.4e-05 Score=77.11 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=79.2
Q ss_pred cccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccccccccccccccee
Q 039821 316 SLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELL 395 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l 395 (555)
++++|++++|.++.+|. -..+|++|.+++|..+..+|.. + .++|++|.+++|..+..+
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-----------------L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-----------------I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-----------------h--hhhhhheEccCccccccc
Confidence 77777777777777772 2346777777777777666652 1 246677777777655432
Q ss_pred eecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccc
Q 039821 396 KIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLR 475 (555)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~ 475 (555)
.++|+.|++.++ ....++. -.++|+.|.+.++...... .. ...-.++|+
T Consensus 111 ----------------P~sLe~L~L~~n-~~~~L~~--LPssLk~L~I~~~n~~~~~----------~l--p~~LPsSLk 159 (426)
T PRK15386 111 ----------------PESVRSLEIKGS-ATDSIKN--VPNGLTSLSINSYNPENQA----------RI--DNLISPSLK 159 (426)
T ss_pred ----------------ccccceEEeCCC-CCccccc--CcchHhheecccccccccc----------cc--ccccCCccc
Confidence 234666666543 2222221 1257888887543211000 00 001126899
Q ss_pred eeecCcccccccccccccCCCCcceEEEcCC
Q 039821 476 LLRLSHLPNLKSIYWKPLPFTHLKEMVVRGC 506 (555)
Q Consensus 476 ~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C 506 (555)
+|.+++|..+. +|... ..+|+.|.++.+
T Consensus 160 ~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 160 TLSLTGCSNII-LPEKL--PESLQSITLHIE 187 (426)
T ss_pred EEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence 99999997664 44322 268999999775
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=1.5e-05 Score=85.41 Aligned_cols=64 Identities=28% Similarity=0.462 Sum_probs=36.5
Q ss_pred ccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccch
Q 039821 289 LKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 289 L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
++.|+|++|.. ...+|..++.+. +|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|.
T Consensus 420 v~~L~L~~n~L---~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQGL---RGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEECCCCCc---cccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 45556665533 345566666665 6666666666654 4555666666666666666643334554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.2e-05 Score=50.56 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=33.4
Q ss_pred CcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccch
Q 039821 287 PSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE 332 (555)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~ 332 (555)
++|++|++++| . +..+|+.++++. +|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N-~---i~~l~~~l~~l~-~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-Q---ITDLPPELSNLP-NLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S----SSHGGHGTTCT-TSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-C---CcccCchHhCCC-CCCEEEecCCCCCCCcC
Confidence 47899999999 6 788888888998 99999999999888764
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.70 E-value=4.8e-06 Score=79.97 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccccccccccccccccccc
Q 039821 337 LVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLH 416 (555)
Q Consensus 337 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 416 (555)
...|+.|+.++|..+...+ +..|. .+..+|+.|-+..|..+.......... +.+.|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~---l~aLg------------~~~~~L~~l~l~~c~~fsd~~ft~l~r--------n~~~Le 349 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEV---LWALG------------QHCHNLQVLELSGCQQFSDRGFTMLGR--------NCPHLE 349 (483)
T ss_pred hhHhhhhcccCCCCCchHH---HHHHh------------cCCCceEEEeccccchhhhhhhhhhhc--------CChhhh
Confidence 4567777777775533333 22221 346888888888888766544333222 688899
Q ss_pred EEEEeecCCCCccc---ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccc-cc
Q 039821 417 CVTIHICQKLKDTT---FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYW-KP 492 (555)
Q Consensus 417 ~L~l~~~~~l~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~ 492 (555)
.+++.+|....+-. .-.+++.|+.|.++.|..+.+- ++..+.........|+.+.+++|+.+..-.. ..
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-------hhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 99998885443322 2347899999999999776654 1111222345667889999999987764322 22
Q ss_pred cCCCCcceEEEcCCCCCCccC
Q 039821 493 LPFTHLKEMVVRGCDQLEKLP 513 (555)
Q Consensus 493 ~~~~~L~~L~l~~C~~L~~lp 513 (555)
...++|+.+++.+|....+=|
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhCcccceeeeechhhhhhhh
Confidence 346788999988887765543
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.62 E-value=4.9e-05 Score=71.59 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=18.2
Q ss_pred ccccccEEEEeecCCCCc----c-cccccCCCCceEEeecCC
Q 039821 411 VFRSLHCVTIHICQKLKD----T-TFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~----~-~~l~~l~~L~~L~l~~~~ 447 (555)
.+++|+.|++.+|..-.. + ..++.+++|++|++++|.
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 455666666665532111 0 133445566666666664
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.51 E-value=2.8e-05 Score=73.17 Aligned_cols=223 Identities=16% Similarity=0.094 Sum_probs=126.2
Q ss_pred cceeEeecccccccc-----c-cCCCCCCcceEEEcccCc---chhccch------hHhccCCcccEEEecCCCCCcccc
Q 039821 240 ENVRRLSLMQNQIET-----L-SEVPTCPHLLTLFLDFNE---DVEMIAD------GFFQFMPSLKVLKMSNCGKSWSNF 304 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~---~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~ 304 (555)
..+..+.+++|.+.. + +.+.+.++|+..+++.-- ....+|+ .++.+.++|++|+|+.|-. -.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~---G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF---GP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc---Cc
Confidence 467788888887643 1 122555677777766421 1112221 2245567888999888854 33
Q ss_pred ccChh----HhhhhccccEEEcCCCCCcccch--------------hhhCCCCCcEEccCCCccccccchHH----Hhcc
Q 039821 305 QLPVG----MSELGSSLELLDISHTSIRELPE--------------ELKKLVNLKCLNLRRTELLNKIPRQL----ISNS 362 (555)
Q Consensus 305 ~lp~~----~~~l~~~L~~L~l~~~~i~~lp~--------------~i~~L~~L~~L~l~~~~~l~~lp~~~----i~~l 362 (555)
..++. +.... .|++|.|.+|++...-- -+.+-++|+++...+| .+..-+... +...
T Consensus 107 ~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 107 KGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred cchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 33333 33444 78888888887653221 2345567888888887 555544332 2222
Q ss_pred ccc---cccccCcc---------ccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc
Q 039821 363 SRD---TTSVIDAT---------AFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT 430 (555)
Q Consensus 363 ~~L---~L~~~~~~---------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 430 (555)
..| .+....+. .|..+++|+.|++.++.--..- ...+....+.+++|+.|++.+| .++.-.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~LakaL~s~~~L~El~l~dc-ll~~~G 257 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALAKALSSWPHLRELNLGDC-LLENEG 257 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHHHHhcccchheeeccccc-cccccc
Confidence 233 22222222 4567788888888776211100 0011222337889999999999 444311
Q ss_pred -------ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcc
Q 039821 431 -------FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHL 482 (555)
Q Consensus 431 -------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 482 (555)
.-...|+|+.|.+.+|..-.+... .+.......|.|+.|++++|
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCCcc
Confidence 123589999999999864333211 01113445788888888875
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=5.6e-05 Score=80.93 Aligned_cols=30 Identities=43% Similarity=0.643 Sum_probs=14.8
Q ss_pred cccEEEcCCCCCcccchhhhCCCCCcEEccC
Q 039821 316 SLELLDISHTSIRELPEELKKLVNLKCLNLR 346 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 346 (555)
+|+.||+|+|+++.+ .+|+.|++|+.|.++
T Consensus 174 NL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred ccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 555555555555444 344455555544444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=3.3e-06 Score=86.41 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=68.0
Q ss_pred CccCccceeEeeccccccccccCCCCC-CcceEEEcccCcc-hhccchhH---hcc---CCcccEEEecCCCCCcccccc
Q 039821 235 DVKGWENVRRLSLMQNQIETLSEVPTC-PHLLTLFLDFNED-VEMIADGF---FQF---MPSLKVLKMSNCGKSWSNFQL 306 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~-~~~~~~~~---~~~---l~~L~~L~l~~~~~~~~~~~l 306 (555)
++..+..+|+|-+.+..+.....+..+ ..|++|..+..-. ++.+.... +++ -..|.+.+.++| . +..+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~---L~~m 179 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-R---LVLM 179 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-h---HHhH
Confidence 455567888888887766553333211 2234443332110 11100000 000 134666677777 4 5555
Q ss_pred ChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccch
Q 039821 307 PVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 307 p~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
-.++.-++ .|+.|+|++|++.+.. .+..+++|+||||+.| .+..+|.
T Consensus 180 D~SLqll~-ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~ 226 (1096)
T KOG1859|consen 180 DESLQLLP-ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQ 226 (1096)
T ss_pred HHHHHHHH-HhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccc
Confidence 55665565 8999999999888877 6788889999999888 5777775
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=9.4e-05 Score=68.16 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCCCcceEEEcccCcchhccch--hHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCC--cccchhh
Q 039821 259 PTCPHLLTLFLDFNEDVEMIAD--GFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSI--RELPEEL 334 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i--~~lp~~i 334 (555)
..+.+++.+++.++. +.++.+ ..+.+|+.|++|+++.|.-...+.++| -.+. +|+.|-|.++.+ +......
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~-nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK-NLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc-ceEEEEEcCCCCChhhhhhhh
Confidence 556777777777553 444332 235678888888888775433455555 1233 788888887754 3445556
Q ss_pred hCCCCCcEEccCCC
Q 039821 335 KKLVNLKCLNLRRT 348 (555)
Q Consensus 335 ~~L~~L~~L~l~~~ 348 (555)
..++.++.|.++.|
T Consensus 143 ~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 143 DDLPKVTELHMSDN 156 (418)
T ss_pred hcchhhhhhhhccc
Confidence 66777777776666
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.36 E-value=6.2e-05 Score=76.91 Aligned_cols=102 Identities=27% Similarity=0.439 Sum_probs=57.0
Q ss_pred CccceeEeeccccccccccC-CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcc
Q 039821 238 GWENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSS 316 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~ 316 (555)
...++..+++.++.+..+.. ...+.+|++|+++++. +..+.. +..+..|+.|++.+| . +..+. .+..+. .
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N-~---i~~~~-~~~~l~-~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGN-L---ISDIS-GLESLK-S 163 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhheeccC-c---chhcc-CCccch-h
Confidence 34556666666666666666 5666666666666443 444433 444555666666666 3 33332 222244 6
Q ss_pred ccEEEcCCCCCcccchh-hhCCCCCcEEccCCC
Q 039821 317 LELLDISHTSIRELPEE-LKKLVNLKCLNLRRT 348 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 348 (555)
|+.++++++.+..++.. ...+.+|+.+.+.+|
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666666666665543 355666666666665
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.33 E-value=7.5e-05 Score=76.30 Aligned_cols=105 Identities=30% Similarity=0.352 Sum_probs=72.4
Q ss_pred eeEeecccccccc-ccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEE
Q 039821 242 VRRLSLMQNQIET-LSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELL 320 (555)
Q Consensus 242 l~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L 320 (555)
+..+++..+.+.. ...+..+.+|..|++.++. +..+... +..+.+|++|++++| . +..+ .++..+. .|+.|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~-l~~~~~L~~L~ls~N-~---I~~i-~~l~~l~-~L~~L 145 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENL-LSSLVNLQVLDLSFN-K---ITKL-EGLSTLT-LLKEL 145 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccc-hhhhhcchheecccc-c---cccc-cchhhcc-chhhh
Confidence 3444455555555 3336778888888888544 5555442 466888888888888 5 6665 3566676 78888
Q ss_pred EcCCCCCcccchhhhCCCCCcEEccCCCccccccch
Q 039821 321 DISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 321 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
++++|.|..++. +..+.+|+.+++++| .+..+..
T Consensus 146 ~l~~N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~ 179 (414)
T KOG0531|consen 146 NLSGNLISDISG-LESLKSLKLLDLSYN-RIVDIEN 179 (414)
T ss_pred eeccCcchhccC-CccchhhhcccCCcc-hhhhhhh
Confidence 888888888775 455888888888888 4555554
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00038 Score=74.70 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=73.9
Q ss_pred ceeEeecccccccc--c--cCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcc
Q 039821 241 NVRRLSLMQNQIET--L--SEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSS 316 (555)
Q Consensus 241 ~l~~L~l~~~~~~~--l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~ 316 (555)
++++|++.+...-. . .-..-+|.|++|.+.+-....+--......+++|+.||++++ . +..+ .+++.+. +
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-n---I~nl-~GIS~Lk-n 196 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-N---ISNL-SGISRLK-N 196 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-C---ccCc-HHHhccc-c
Confidence 67778777644321 1 112678899999988543222211223567899999999999 5 6666 7899998 9
Q ss_pred ccEEEcCCCCCcccch--hhhCCCCCcEEccCCCcc
Q 039821 317 LELLDISHTSIRELPE--ELKKLVNLKCLNLRRTEL 350 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~ 350 (555)
|+.|.+.+-.+..-+. .+..|++|++||++..+.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 9999998888776553 678899999999988744
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.10 E-value=0.00071 Score=59.09 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=38.1
Q ss_pred ccccccEEEEeecC--CCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCc
Q 039821 411 VFRSLHCVTIHICQ--KLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSH 481 (555)
Q Consensus 411 ~~~~L~~L~l~~~~--~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 481 (555)
.+++|+.|.+.+++ .+.++..+..+|.|++|.+-+|+.-+.--. . .-.+..+|+|+.|++..
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y-------R--~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY-------R--LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCc-------e--eEEEEecCcceEeehhh
Confidence 46677777777763 334455667778888888877754332110 0 01245678888888875
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00015 Score=66.90 Aligned_cols=205 Identities=19% Similarity=0.209 Sum_probs=110.6
Q ss_pred cceeEeeccccccccccCC----CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhc
Q 039821 240 ENVRRLSLMQNQIETLSEV----PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGS 315 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~ 315 (555)
.+++.+++.+|.+.+.... .+++.|++|+++.+. +..........+.+|++|-|.|+.-. ....-.....++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP- 146 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLP- 146 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcch-
Confidence 4677788888877765443 789999999999554 33222221135789999999988553 333444555665
Q ss_pred cccEEEcCCCCCccc--ch-hhhCC-CCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccc
Q 039821 316 SLELLDISHTSIREL--PE-ELKKL-VNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKE 391 (555)
Q Consensus 316 ~L~~L~l~~~~i~~l--p~-~i~~L-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~ 391 (555)
.++.|.++.|+...+ .. .+..- +.+++|..-+|. .....+ +.++. .-++++..+-+..|+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~--~~~w~~-~~~l~------------r~Fpnv~sv~v~e~P- 210 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL--EQLWLN-KNKLS------------RIFPNVNSVFVCEGP- 210 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcH--HHHHHH-HHhHH------------hhcccchheeeecCc-
Confidence 888888888854432 11 12111 245566666662 222222 22222 224555544444432
Q ss_pred cceeeecccccccccccccccccccEEEEeecC--CCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCC
Q 039821 392 LELLKIDYTEIVRKRREPFVFRSLHCVTIHICQ--KLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHIS 469 (555)
Q Consensus 392 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 469 (555)
+......-. ...++.+.-|.+..+. .+-.+..+.+++.|..|.+++++.++.+-.. +...--++
T Consensus 211 lK~~s~ek~--------se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~------err~llIa 276 (418)
T KOG2982|consen 211 LKTESSEKG--------SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG------ERRFLLIA 276 (418)
T ss_pred ccchhhccc--------CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC------cceEEEEe
Confidence 111111000 0155666666665542 1222345667888888888888766654321 11111345
Q ss_pred CCcccceee
Q 039821 470 PFENLRLLR 478 (555)
Q Consensus 470 ~~~~L~~L~ 478 (555)
.+++++.|+
T Consensus 277 RL~~v~vLN 285 (418)
T KOG2982|consen 277 RLTKVQVLN 285 (418)
T ss_pred eccceEEec
Confidence 666666664
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=0.00011 Score=76.97 Aligned_cols=87 Identities=24% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCCcceEEEcccCcchhccc-hhHhccCCcccEEEecCCCCCcccccc----ChhHhhhhccccEEEcCCCC-Ccccch-
Q 039821 260 TCPHLLTLFLDFNEDVEMIA-DGFFQFMPSLKVLKMSNCGKSWSNFQL----PVGMSELGSSLELLDISHTS-IRELPE- 332 (555)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~l----p~~~~~l~~~L~~L~l~~~~-i~~lp~- 332 (555)
.+++|+.+.+.++..+.... .......++|+.|+++++... .... +.....+. +|+.|+++++. +++.--
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~-~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL--ITLSPLLLLLLLSICR-KLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc--cccchhHhhhhhhhcC-CcCccchhhhhccCchhHH
Confidence 35666666666554444321 122445666666666652010 1111 11122222 56666666664 332211
Q ss_pred hhh-CCCCCcEEccCCCc
Q 039821 333 ELK-KLVNLKCLNLRRTE 349 (555)
Q Consensus 333 ~i~-~L~~L~~L~l~~~~ 349 (555)
.+. .+++|++|.+.+|.
T Consensus 263 ~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCS 280 (482)
T ss_pred HHHhhCCCcceEccCCCC
Confidence 111 24566666655553
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.85 E-value=0.00043 Score=56.50 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCC
Q 039821 260 TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVN 339 (555)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~ 339 (555)
...+|...+++++ .++++|+.+-.+++.+..|++++| . +..+|..+..++ .|+.|+++.|.+...|.-|..|.+
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-e---isdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-E---ISDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-h---hhhchHHHhhhH-HhhhcccccCccccchHHHHHHHh
Confidence 3344555566633 366666665555566777777777 5 667777766666 777777777777777776666777
Q ss_pred CcEEccCCCccccccch
Q 039821 340 LKCLNLRRTELLNKIPR 356 (555)
Q Consensus 340 L~~L~l~~~~~l~~lp~ 356 (555)
|-.|+..++ ....+|-
T Consensus 125 l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 125 LDMLDSPEN-ARAEIDV 140 (177)
T ss_pred HHHhcCCCC-ccccCcH
Confidence 777777666 3455554
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.75 E-value=0.0005 Score=56.14 Aligned_cols=95 Identities=26% Similarity=0.273 Sum_probs=72.1
Q ss_pred ceEEEcccCcchhccch--hHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCc
Q 039821 264 LLTLFLDFNEDVEMIAD--GFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLK 341 (555)
Q Consensus 264 L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~ 341 (555)
+..++++.|. +..+++ ..+.+..+|...++++| . ...+|+.+....+.++.|++++|.|.++|.++..++.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-G---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-h---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 3345555343 333332 23566788899999999 6 889999988777799999999999999999999999999
Q ss_pred EEccCCCccccccchHHHhccccc
Q 039821 342 CLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 342 ~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
.|+++.| .+...|.- |..|.++
T Consensus 104 ~lNl~~N-~l~~~p~v-i~~L~~l 125 (177)
T KOG4579|consen 104 SLNLRFN-PLNAEPRV-IAPLIKL 125 (177)
T ss_pred hcccccC-ccccchHH-HHHHHhH
Confidence 9999999 46677765 4444444
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.68 E-value=0.0001 Score=75.95 Aligned_cols=100 Identities=26% Similarity=0.281 Sum_probs=47.6
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELL 320 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L 320 (555)
.+++|++++|.+..+..+..+++|++|+|++|. +..+|.-...++. |..|.+++| . +..+ .++.++. +|+.|
T Consensus 188 ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~---l~tL-~gie~Lk-sL~~L 259 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-A---LTTL-RGIENLK-SLYGL 259 (1096)
T ss_pred HhhhhccchhhhhhhHHHHhcccccccccccch-hccccccchhhhh-heeeeeccc-H---HHhh-hhHHhhh-hhhcc
Confidence 455555555555555555555555555555443 3333332122222 555555555 3 3333 3455555 55555
Q ss_pred EcCCCCCcccch--hhhCCCCCcEEccCCC
Q 039821 321 DISHTSIRELPE--ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 321 ~l~~~~i~~lp~--~i~~L~~L~~L~l~~~ 348 (555)
|+++|-+.+... -++.|..|+.|.|.||
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 555553332221 1334445555555555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0027 Score=55.60 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=74.5
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc--ChhHhhhhcccc
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL--PVGMSELGSSLE 318 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l--p~~~~~l~~~L~ 318 (555)
....+++.+|.+..+..++.++.|.+|.+.. +.+..+.+..-..+++|..|.+.+| . +..+ -.....++ .|+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-s---i~~l~dl~pLa~~p-~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-S---IQELGDLDPLASCP-KLE 116 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecC-CcceeeccchhhhccccceEEecCc-c---hhhhhhcchhccCC-ccc
Confidence 4556778888888888888899999999984 4477776664556788999999888 4 3332 12233454 889
Q ss_pred EEEcCCCCCcccch----hhhCCCCCcEEccCCC
Q 039821 319 LLDISHTSIRELPE----ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 319 ~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 348 (555)
+|.+-+|.++.... -+.++++|++||+.+=
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998888877665 3677888999988654
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.46 E-value=0.00054 Score=71.75 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCCcceEEEcccC-cchhccc---hhHhccCCcccEEEecCCCCCcccc-ccChhHhh-hhccccEEEcCCCC-Cccc-
Q 039821 259 PTCPHLLTLFLDFN-EDVEMIA---DGFFQFMPSLKVLKMSNCGKSWSNF-QLPVGMSE-LGSSLELLDISHTS-IREL- 330 (555)
Q Consensus 259 ~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~-~lp~~~~~-l~~~L~~L~l~~~~-i~~l- 330 (555)
..+++|+.|++.++ ......+ ......+++|+.|+++++.. +. ..-..+.. ++ +|++|.+.+|. ++..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---isd~~l~~l~~~c~-~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL---VTDIGLSALASRCP-NLETLSLSNCSNLTDEG 286 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc---cCchhHHHHHhhCC-CcceEccCCCCccchhH
Confidence 66777777777652 2111111 11234457777777777632 11 11122222 33 77777766664 4332
Q ss_pred -chhhhCCCCCcEEccCCCccc
Q 039821 331 -PEELKKLVNLKCLNLRRTELL 351 (555)
Q Consensus 331 -p~~i~~L~~L~~L~l~~~~~l 351 (555)
-.-...+++|++|++++|..+
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHHhcCcccEEeeecCccc
Confidence 223345667777777777544
No 64
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.22 E-value=0.07 Score=60.83 Aligned_cols=171 Identities=15% Similarity=0.228 Sum_probs=105.2
Q ss_pred CCcEEEEEeCchhhhc--cc-CCcceEEcC----CCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHH
Q 039821 11 TTSKVVFTTRFIDVCG--SM-ESHRKFEVA----CLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALIT 83 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 83 (555)
++-++|||||...-.. .. ......++. +|+.+|+.++|....+..- + .+...++.+.|+|+|+++..
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQL 224 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHH
Confidence 4567889999743221 11 112345565 9999999999987764421 1 23467899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhh-ccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHHHh
Q 039821 84 IGRAMAYRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFS-YDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWIGE 162 (555)
Q Consensus 84 ~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~s-y~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~ae 162 (555)
++..+....... ......+... ....+...+.-. |+.||+ +.+..+...|+++ .++.. +. .
T Consensus 225 ~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~-----~ 286 (903)
T PRK04841 225 IALSARQNNSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LI-----V 286 (903)
T ss_pred HHHHHhhCCCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HH-----H
Confidence 988775432100 0111111100 011344444333 789998 8999999999986 33322 22 2
Q ss_pred CCCCCCcccChHHhHHHHHHHHHHhccccc-c--CCCeEEechhhHHHHHHHH
Q 039821 163 GFLGESDRFGAENQGYDILDTLVRACLLEE-V--EDDKVKMHDVIRDMALWIT 212 (555)
Q Consensus 163 g~~~~~~~~~~~~~~~~~l~~Lv~~sli~~-~--~~~~~~mhdl~~~~~~~~~ 212 (555)
.+.+ .+.+...++.+...+++.. . +...|+.|++++++.....
T Consensus 287 ~l~~-------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 287 RVTG-------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHcC-------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1111 1224567899999998643 2 2346889999999987654
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0021 Score=34.85 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=12.9
Q ss_pred cccEEEcCCCCCcccchhhhC
Q 039821 316 SLELLDISHTSIRELPEELKK 336 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~i~~ 336 (555)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0015 Score=59.95 Aligned_cols=85 Identities=25% Similarity=0.182 Sum_probs=56.6
Q ss_pred CcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccch--hhhCCCC
Q 039821 262 PHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE--ELKKLVN 339 (555)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~--~i~~L~~ 339 (555)
.+.+.|++.+|. +.++.- ..+|+.|++|.|+-| . +..+ ..+..+. +|+.|.|+.|.|.++.. -+.++++
T Consensus 19 ~~vkKLNcwg~~-L~DIsi--c~kMp~lEVLsLSvN-k---IssL-~pl~rCt-rLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISI--CEKMPLLEVLSLSVN-K---ISSL-APLQRCT-RLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCC-ccHHHH--HHhcccceeEEeecc-c---cccc-hhHHHHH-HHHHHHHHhcccccHHHHHHHhcCch
Confidence 344555555443 444433 567888888888887 4 5555 3456666 88888888888877765 4677888
Q ss_pred CcEEccCCCccccccc
Q 039821 340 LKCLNLRRTELLNKIP 355 (555)
Q Consensus 340 L~~L~l~~~~~l~~lp 355 (555)
|+.|-|..|+-...-+
T Consensus 90 Lr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhHhhccCCcccccc
Confidence 8888887775544444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.56 E-value=0.0075 Score=55.12 Aligned_cols=63 Identities=33% Similarity=0.438 Sum_probs=39.7
Q ss_pred hccCCcccEEEecCC--CCCccccccChhHhhhhccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCc
Q 039821 283 FQFMPSLKVLKMSNC--GKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 283 ~~~l~~L~~L~l~~~--~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~ 349 (555)
|..+++|++|.++.| +. ...++.....++ +|++|++++|+|+.+.. .+..+.+|..|++..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~---~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV---SGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccc---cccceehhhhCC-ceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 445667777777766 22 334444444554 88888888886664321 35567778888888874
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.50 E-value=0.011 Score=54.04 Aligned_cols=106 Identities=26% Similarity=0.260 Sum_probs=74.7
Q ss_pred ccceeEeeccccccccccCCCCCCcceEEEcccCc--chhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcc
Q 039821 239 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNE--DVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSS 316 (555)
Q Consensus 239 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~ 316 (555)
...+..+++.+.....+...+.+++|+.|.++.+. ....++.- ...+++|++|++++|... .+..+ .....+. +
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~-~lstl-~pl~~l~-n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK-DLSTL-RPLKELE-N 117 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc-ccccc-chhhhhc-c
Confidence 35677788888888888888999999999999662 22233332 345699999999999431 12222 2345666 8
Q ss_pred ccEEEcCCCCCcccch----hhhCCCCCcEEccCCC
Q 039821 317 LELLDISHTSIRELPE----ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 348 (555)
|..|++.+|....+-. -+.-+++|++||-...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 9999999997776643 2455788888887665
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.13 E-value=0.013 Score=29.45 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=8.0
Q ss_pred cccEEEcCCCCCcccc
Q 039821 316 SLELLDISHTSIRELP 331 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp 331 (555)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666655
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.18 E-value=0.037 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=9.0
Q ss_pred CCcceEEEcCCCCCCccC
Q 039821 496 THLKEMVVRGCDQLEKLP 513 (555)
Q Consensus 496 ~~L~~L~l~~C~~L~~lp 513 (555)
++|+.|++++|. |++||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 457777777776 76665
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.0061 Score=53.45 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=43.2
Q ss_pred cCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCc--ccccccCCCCceEEeecCC
Q 039821 375 FADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD--TTFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 375 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~~~ 447 (555)
+.+++.++.|.+.+|+.+....++.... ..++|+.|+|++|+.+++ +.++..+++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4566777777788887776555544322 467777788887777765 3466677777777766543
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.45 E-value=0.29 Score=48.33 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=86.6
Q ss_pred CcEEEEEeCchhhhcccC--CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 039821 12 TSKVVFTTRFIDVCGSME--SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAMA 89 (555)
Q Consensus 12 gsrIivTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 89 (555)
.+-|..|||...+..... ....+++++++.++..+++.+.+...+...++ +....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH
Confidence 566777888654433211 23578999999999999999988665434433 3578999999999965544443321
Q ss_pred cCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHh-HhcCCCCCcccchHHHHHHHHHhCCCCCC
Q 039821 90 YRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFL-YCCLYPEDYDILKWDLIDCWIGEGFLGES 168 (555)
Q Consensus 90 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~Fp~~~~i~~~~li~~w~aeg~~~~~ 168 (555)
.|.... ...... ...-......+...+..|+. ..+..+. ....|+.+ .+..+.+.... ..
T Consensus 228 ------~~a~~~---~~~~I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~- 288 (328)
T PRK00080 228 ------DFAQVK---GDGVIT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE- 288 (328)
T ss_pred ------HHHHHc---CCCCCC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-
Confidence 121110 000000 00001334455667778877 5555554 55566655 34444432221 11
Q ss_pred cccChHHhHHHHHH-HHHHhcccccc
Q 039821 169 DRFGAENQGYDILD-TLVRACLLEEV 193 (555)
Q Consensus 169 ~~~~~~~~~~~~l~-~Lv~~sli~~~ 193 (555)
..+..++.++ .|++.++++..
T Consensus 289 ----~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 289 ----ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred ----CcchHHHHhhHHHHHcCCcccC
Confidence 1123333455 78888888654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=0.02 Score=52.77 Aligned_cols=61 Identities=26% Similarity=0.448 Sum_probs=30.1
Q ss_pred ccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccch-hHhccCCcccEEEecCC
Q 039821 236 VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIAD-GFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 297 (555)
...+..+..|+++-|.+..+..+..|.+|+.|.|..|. +.++.. ..+.++++||+|-|..|
T Consensus 37 c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 34444555555555555555555555555555555333 333321 23445555555555544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.24 E-value=0.059 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=14.6
Q ss_pred cccEEEecCCCCCccccccChhHhh
Q 039821 288 SLKVLKMSNCGKSWSNFQLPVGMSE 312 (555)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~lp~~~~~ 312 (555)
+|++|++++| . +..+|+++++
T Consensus 1 ~L~~Ldls~n-~---l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-N---LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-E---ESEEGTTTTT
T ss_pred CccEEECCCC-c---CEeCChhhcC
Confidence 4778888888 5 6677776543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.048 Score=47.98 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=53.9
Q ss_pred cccEEEEeecCCC-CcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccc-c
Q 039821 414 SLHCVTIHICQKL-KDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYW-K 491 (555)
Q Consensus 414 ~L~~L~l~~~~~l-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~ 491 (555)
.++.++-+++.-. ..+..+..++.++.|.+.+|..+++.- +..+- +..++|+.|+|++|+++++-.. .
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-------L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-------LERLG---GLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-------HHHhc---ccccchheeeccCCCeechhHHHH
Confidence 3445555554221 123456677888888888887766541 11111 2467888888888887775422 2
Q ss_pred ccCCCCcceEEEcCCCCCCccC
Q 039821 492 PLPFTHLKEMVVRGCDQLEKLP 513 (555)
Q Consensus 492 ~~~~~~L~~L~l~~C~~L~~lp 513 (555)
...+++|+.|.+.+.+....+-
T Consensus 172 L~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred HHHhhhhHHHHhcCchhhhchH
Confidence 3457888888887766554443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.91 E-value=0.52 Score=38.99 Aligned_cols=104 Identities=21% Similarity=0.318 Sum_probs=43.1
Q ss_pred ceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhh-hhccc
Q 039821 241 NVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSE-LGSSL 317 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~-l~~~L 317 (555)
+++.+.+.. .+..+.. ...+.+|+.+.+.. .+..++..+|..++.|+.+.+..+ ...++..... .. +|
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~-~l 83 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN-----LKSIGDNAFSNCT-NL 83 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST-----T-EE-TTTTTT-T-TE
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc-----ccccccccccccc-cc
Confidence 455555442 3333332 25556666666653 255666666666666777777543 3344433332 44 67
Q ss_pred cEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchH
Q 039821 318 ELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
+.+.+..+ +..++. .+... +|+.+.+.. .+..++..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~ 120 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEEN 120 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCc
Confidence 77776553 555544 34444 666666554 24445543
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.86 E-value=2.9 Score=40.71 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=85.5
Q ss_pred CCcEEEEEeCchhhhccc--CCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVCGSM--ESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
+.+-|.+|||...+.... .....+++++++.+|..+++.+.+.......++ +....|++.|+|.|-.+..++..+
T Consensus 129 ~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHHHHHH
Confidence 366677788865543321 123568999999999999999988644433333 356789999999997665555433
Q ss_pred hcCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHh-HhcCCCCCcccchHHHHHHHHHhCCCCC
Q 039821 89 AYRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFL-YCCLYPEDYDILKWDLIDCWIGEGFLGE 167 (555)
Q Consensus 89 ~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~Fp~~~~i~~~~li~~w~aeg~~~~ 167 (555)
. .... ........ ...-.+....+..+|..++. +.+..+. ..+.+..+ .+..+++.... |.
T Consensus 206 ~--------~~a~-~~~~~~it-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--- 267 (305)
T TIGR00635 206 R--------DFAQ-VRGQKIIN-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--- 267 (305)
T ss_pred H--------HHHH-HcCCCCcC-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---
Confidence 1 1100 00000000 00001222235566778877 5555554 44555433 33333322221 11
Q ss_pred CcccChHHhHHHHHH-HHHHhccccccC
Q 039821 168 SDRFGAENQGYDILD-TLVRACLLEEVE 194 (555)
Q Consensus 168 ~~~~~~~~~~~~~l~-~Lv~~sli~~~~ 194 (555)
........++ .|++++++....
T Consensus 268 -----~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 268 -----DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred -----CcchHHHhhhHHHHHcCCcccCC
Confidence 1123444466 699999987543
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.80 E-value=0.34 Score=40.12 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=53.7
Q ss_pred CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-HhhhhccccEEEcCCCCCcccch-hhh
Q 039821 258 VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSLELLDISHTSIRELPE-ELK 335 (555)
Q Consensus 258 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~-~i~ 335 (555)
..++.+|+.+.+.. .+..+....|..+.+|+.+.+..+ +..++.. +.... .|+.+.+.. .+..++. .+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-----LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-----TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-----ccccceeeeeccc-ccccccccc-ccccccccccc
Confidence 36777889888863 477788888999989999999876 5555543 34444 899999976 6666666 456
Q ss_pred CCCCCcEEccCCCccccccchH
Q 039821 336 KLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 336 ~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
..++|+.+++..+ +..++..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~ 98 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSS 98 (129)
T ss_dssp T-TTECEEEETTT---BEEHTT
T ss_pred ccccccccccCcc--ccEEchh
Confidence 6889999998654 5666664
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.61 E-value=0.28 Score=45.36 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=21.5
Q ss_pred hccCCcccEEEecCCCCCccccccChhHhhhh---ccccEEEcCCCCCc
Q 039821 283 FQFMPSLKVLKMSNCGKSWSNFQLPVGMSELG---SSLELLDISHTSIR 328 (555)
Q Consensus 283 ~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~---~~L~~L~l~~~~i~ 328 (555)
+-++++|+..+|+.|-+ -...|+.++.+. ..|.+|.+++|++.
T Consensus 88 Llkcp~l~~v~LSDNAf---g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAF---GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeecccccc---CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34556666666666644 333343333221 25666666666543
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=90.45 E-value=0.99 Score=41.88 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCcEEEEEeCc----------hhhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchH
Q 039821 11 TTSKVVFTTRF----------IDVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLA 80 (555)
Q Consensus 11 ~gsrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 80 (555)
.|+.|||||.+ +.+.+.+.....++++++++++.++++.+++.......+++ ...-|++++.|-.-+
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~---v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDE---VANFLLKRLDRDMHT 199 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhccCCHHH
Confidence 46666665554 35666666677999999999999999999997555344433 456677777665544
Q ss_pred HH
Q 039821 81 LI 82 (555)
Q Consensus 81 i~ 82 (555)
+.
T Consensus 200 l~ 201 (229)
T PRK06893 200 LF 201 (229)
T ss_pred HH
Confidence 43
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.76 E-value=0.7 Score=42.84 Aligned_cols=90 Identities=21% Similarity=0.260 Sum_probs=53.4
Q ss_pred ccCCCCCCcceEEEcccCcchhccch---hHhccCCcccEEEecCCCCCccccccC-hhHh----hh--------hcccc
Q 039821 255 LSEVPTCPHLLTLFLDFNEDVEMIAD---GFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMS----EL--------GSSLE 318 (555)
Q Consensus 255 l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~----~l--------~~~L~ 318 (555)
++.+.+|++|+..+++.+..-...++ .++.+...|..|.+++|+. ..+- ..|+ .+ .|.|+
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl----Gp~aG~rigkal~~la~nKKaa~kp~Le 160 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL----GPIAGGRIGKALFHLAYNKKAADKPKLE 160 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC----CccchhHHHHHHHHHHHHhhhccCCCce
Confidence 34457888888888886653222222 3456677888888888832 2221 1122 11 14788
Q ss_pred EEEcCCCCCcccchh-----hhCCCCCcEEccCCC
Q 039821 319 LLDISHTSIRELPEE-----LKKLVNLKCLNLRRT 348 (555)
Q Consensus 319 ~L~l~~~~i~~lp~~-----i~~L~~L~~L~l~~~ 348 (555)
......|++..-|.. +..-.+|+++.+..|
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence 888887777766542 223356777777766
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.64 E-value=0.44 Score=26.75 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=11.1
Q ss_pred cccEEEcCCCCCcccchh
Q 039821 316 SLELLDISHTSIRELPEE 333 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~ 333 (555)
+|++|+|++|.|+.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 566666666666666654
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.64 E-value=0.44 Score=26.75 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=11.1
Q ss_pred cccEEEcCCCCCcccchh
Q 039821 316 SLELLDISHTSIRELPEE 333 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~ 333 (555)
+|++|+|++|.|+.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 566666666666666654
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.31 E-value=0.51 Score=26.52 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.4
Q ss_pred CCCCcEEccCCCccccccchHH
Q 039821 337 LVNLKCLNLRRTELLNKIPRQL 358 (555)
Q Consensus 337 L~~L~~L~l~~~~~l~~lp~~~ 358 (555)
|++|++|++.+| .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999999 789999874
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.31 E-value=0.51 Score=26.52 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.4
Q ss_pred CCCCcEEccCCCccccccchHH
Q 039821 337 LVNLKCLNLRRTELLNKIPRQL 358 (555)
Q Consensus 337 L~~L~~L~l~~~~~l~~lp~~~ 358 (555)
|++|++|++.+| .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999999 789999874
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.63 E-value=0.054 Score=48.70 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=68.7
Q ss_pred CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhC
Q 039821 257 EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKK 336 (555)
Q Consensus 257 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~ 336 (555)
....+...+.|+++.+. +-..... |..+..|.-|+++.+ . +..+|..++++. .++.+++..|..+.+|.+.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n-~s~~t~~~rl~~skn-q---~~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKN-FSILTRLVRLDLSKN-Q---IKFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccc-hHHHHHHHHHhccHh-h---HhhChhhHHHHH-HHHHHHhhccchhhCCccccc
Confidence 34667777888887443 3333332 566677888888888 6 888999999998 999999999999999999999
Q ss_pred CCCCcEEccCCCc
Q 039821 337 LVNLKCLNLRRTE 349 (555)
Q Consensus 337 L~~L~~L~l~~~~ 349 (555)
++.+++++..++.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 9999999999885
No 87
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.50 E-value=2.7 Score=45.48 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCCcEEEEEeCchhhhcc---cCCcceEEcC----CCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 9 QNTTSKVVFTTRFIDVCGS---MESHRKFEVA----CLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 9 ~~~gsrIivTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
...|=..|||||+.--... --.+...+++ .++.+|+-++|....+..- -+.-.+.+.+...|.+-|+
T Consensus 157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al 230 (894)
T COG2909 157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHH
Confidence 3467789999997643221 1112233332 4799999999977652211 1234678999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhhhccCCchhhhhhh-hhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHH
Q 039821 82 ITIGRAMAYRKKAEQWRRAIEELRRSASEFAGLGKEVYPLL-KFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWI 160 (555)
Q Consensus 82 ~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~ 160 (555)
..++=.++.+.+.+.-...+....+ -+.+.| .--++.||+ ++|..++-+|+++.- ...|+..-
T Consensus 231 ~L~aLa~~~~~~~~q~~~~LsG~~~----------~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L- 294 (894)
T COG2909 231 QLIALALRNNTSAEQSLRGLSGAAS----------HLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL- 294 (894)
T ss_pred HHHHHHccCCCcHHHHhhhccchHH----------HHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH-
Confidence 9999888854554433332221111 111111 123577888 899999999887432 12233321
Q ss_pred HhCCCCCCcccChHHhHHHHHHHHHHhcccccc---CCCeEEechhhHHHHHHH
Q 039821 161 GEGFLGESDRFGAENQGYDILDTLVRACLLEEV---EDDKVKMHDVIRDMALWI 211 (555)
Q Consensus 161 aeg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~---~~~~~~mhdl~~~~~~~~ 211 (555)
+-++-+..++++|..++++-.. ...-|+.|.++.|+.+.-
T Consensus 295 -----------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 295 -----------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred -----------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 2234566779999999998543 566799999999998744
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.77 E-value=0.11 Score=46.79 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=61.3
Q ss_pred cchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchH
Q 039821 278 IADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 278 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
+|-.-+..++...+||++.+ . ...+-..+..+. .|..|+++.+.+..+|...+.+..+.++++..| +....|.+
T Consensus 33 ~~v~ei~~~kr~tvld~~s~-r---~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s 106 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSN-R---LVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS 106 (326)
T ss_pred cchhhhhccceeeeehhhhh-H---HHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc
Confidence 33333556778899999988 5 666667777887 999999999999999999999999999999887 78899975
No 89
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=80.75 E-value=4.6 Score=37.18 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=30.5
Q ss_pred ceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHH
Q 039821 32 RKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALIT 83 (555)
Q Consensus 32 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 83 (555)
..+.+++|+.+++++++...+... ... +.-++...+|...+||.|..|.-
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 458999999999999999976333 122 11234458999999999987763
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.64 E-value=1.3 Score=24.91 Aligned_cols=16 Identities=25% Similarity=0.731 Sum_probs=11.3
Q ss_pred CCcceEEEcCCCCCCc
Q 039821 496 THLKEMVVRGCDQLEK 511 (555)
Q Consensus 496 ~~L~~L~l~~C~~L~~ 511 (555)
++|+.|++++|++++.
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 6677777777777653
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.63 E-value=1.6 Score=24.52 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=14.0
Q ss_pred ccccEEEcCCCCCcccch
Q 039821 315 SSLELLDISHTSIRELPE 332 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~ 332 (555)
++|++|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 377888888888888876
No 92
>PRK09087 hypothetical protein; Validated
Probab=73.55 E-value=14 Score=34.21 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCcEEEEEeCc---------hhhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 11 TTSKVVFTTRF---------IDVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 11 ~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
.|..||+|++. .+..+.+.....++++++++++-.+++.+++-......++ ++..-|++++.|-.-++
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~---ev~~~La~~~~r~~~~l 192 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP---HVVYYLVSRMERSLFAA 192 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhhhHHHH
Confidence 36679998873 3344555667899999999999999999998544433433 34566777776665554
Q ss_pred HH
Q 039821 82 IT 83 (555)
Q Consensus 82 ~~ 83 (555)
..
T Consensus 193 ~~ 194 (226)
T PRK09087 193 QT 194 (226)
T ss_pred HH
Confidence 43
No 93
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.57 E-value=17 Score=34.38 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=42.1
Q ss_pred ceEEcCCCCHHHHHHHHHHHhCCCCcCCc-hhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 32 RKFEVACLSEEDAWELFREKVGQETLESD-HEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 32 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
..+++++++.+|..+++...+........ .-..+....|++.++|.|..|+.++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 46789999999999998877632211111 1123578899999999999999998877
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=63.93 E-value=28 Score=31.85 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred CcEEEEEeCchh---------hhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHH
Q 039821 12 TSKVVFTTRFID---------VCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALI 82 (555)
Q Consensus 12 gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 82 (555)
+.+||+||+... +...+.....++++++++++-..++...+.......++ +....+++.+.|.|..+.
T Consensus 123 ~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~ 199 (226)
T TIGR03420 123 GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLM 199 (226)
T ss_pred CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHH
Confidence 347899888532 12222224578999999999999998765333322332 334666667888776655
Q ss_pred HHH
Q 039821 83 TIG 85 (555)
Q Consensus 83 ~~~ 85 (555)
.+-
T Consensus 200 ~~l 202 (226)
T TIGR03420 200 ALL 202 (226)
T ss_pred HHH
Confidence 543
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.58 E-value=4.9 Score=21.88 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=6.6
Q ss_pred cccEEEcCCCCCc
Q 039821 316 SLELLDISHTSIR 328 (555)
Q Consensus 316 ~L~~L~l~~~~i~ 328 (555)
+|++|++++|.|.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 5666666666554
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.98 E-value=7.4 Score=21.94 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=9.5
Q ss_pred cccEEEcCCCCCccc
Q 039821 316 SLELLDISHTSIREL 330 (555)
Q Consensus 316 ~L~~L~l~~~~i~~l 330 (555)
+|+.|++++|.|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 666666666666544
No 97
>COG3903 Predicted ATPase [General function prediction only]
Probab=54.57 E-value=14 Score=36.73 Aligned_cols=169 Identities=17% Similarity=0.089 Sum_probs=97.7
Q ss_pred CCcEEEEEeCchhhhcccCCcceEEcCCCCHH-HHHHHHHHHhCCC--CcCCchhHHHHHHHHHHHhCCCchHHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVCGSMESHRKFEVACLSEE-DAWELFREKVGQE--TLESDHEIVELAQTVAKECGGLPLALITIGRA 87 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 87 (555)
+.=+|+.|+|... .+..+..+.+..|+.- ++.++|.-.+... .......-...+..|.++.+|+|+||...+..
T Consensus 116 ~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaar 192 (414)
T COG3903 116 PRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAAR 192 (414)
T ss_pred hhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHH
Confidence 3345777777533 2334567778888776 7999987776322 11222334567899999999999999999998
Q ss_pred HhcCCCHHHHHHH---HHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHHHhCC
Q 039821 88 MAYRKKAEQWRRA---IEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWIGEGF 164 (555)
Q Consensus 88 L~~~~~~~~w~~~---l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~aeg~ 164 (555)
.+.-...+.-..+ +..+......-..........+.+||.-|.. ..+--|--++.|...+... ...|++-|-
T Consensus 193 v~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~ 267 (414)
T COG3903 193 VRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WERALFGRLAVFVGGFDLG----LALAVAAGA 267 (414)
T ss_pred HHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHHHHhcchhhhhhhhccc----HHHHHhcCC
Confidence 8763222211111 1122222110001112467788999999988 7777788888887665443 234444432
Q ss_pred CCCCcccChHHhHHHHHHHHHHhcccc
Q 039821 165 LGESDRFGAENQGYDILDTLVRACLLE 191 (555)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~Lv~~sli~ 191 (555)
... ........-+..+++++++.
T Consensus 268 ~~~----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 268 DVD----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred ccc----cchHHHHHHHHHHhhccchh
Confidence 211 11222333355566666654
No 98
>PRK08727 hypothetical protein; Validated
Probab=52.24 E-value=56 Score=30.27 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCcEEEEEeCch---------hhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCc
Q 039821 11 TTSKVVFTTRFI---------DVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLP 78 (555)
Q Consensus 11 ~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 78 (555)
+|..||+|++.. ++.+.+.....++++++++++-.+++.+++.......++ +...-+++.+.|-.
T Consensus 125 ~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~---e~~~~La~~~~rd~ 198 (233)
T PRK08727 125 AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDE---AAIDWLLTHGEREL 198 (233)
T ss_pred cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCH
Confidence 356699999842 223333345688999999999999999877543333333 34556666666544
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.36 E-value=13 Score=21.30 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=7.9
Q ss_pred cccEEEcCCCCCc
Q 039821 316 SLELLDISHTSIR 328 (555)
Q Consensus 316 ~L~~L~l~~~~i~ 328 (555)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 5666666666554
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=47.91 E-value=78 Score=29.34 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=43.5
Q ss_pred EEEEEeCch---------hhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 14 KVVFTTRFI---------DVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 14 rIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
+||+||+.. ++.+.+....+++++++++++-.+++.+++.......++ ++..-+++++.|---++
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~---~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPE---DVGRFLLKRLDREMRTL 206 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhhcCCHHHH
Confidence 689999743 334455566899999999999999998877443333333 34556666666554333
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=45.03 E-value=83 Score=29.15 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCcEEEEEeCchhh---------hcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 11 TTSKVVFTTRFIDV---------CGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 11 ~gsrIivTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
.|.+||+||+...- .+.+....+++++++++++-.+.+.+++.......++ ++..-+++++.|-.-++
T Consensus 129 ~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~---ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 129 SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTD---EVGHFILTRGTRSMSAL 205 (234)
T ss_pred cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHH
Confidence 46678888874321 2223345688999999999999998776443323332 45566666666654443
Q ss_pred H
Q 039821 82 I 82 (555)
Q Consensus 82 ~ 82 (555)
.
T Consensus 206 ~ 206 (234)
T PRK05642 206 F 206 (234)
T ss_pred H
Confidence 3
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=44.35 E-value=67 Score=29.42 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.1
Q ss_pred CCcEEEEEeCch---------hhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCch
Q 039821 11 TTSKVVFTTRFI---------DVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPL 79 (555)
Q Consensus 11 ~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 79 (555)
.|-+||+|++.. +..+.+...-++++++.++++-.+++.+.+...+...++ ++..-+++.+.+-.-
T Consensus 129 ~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~---~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 129 SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPE---EVIEYLARRFRRDVR 203 (219)
T ss_dssp TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-H---HHHHHHHHHTTSSHH
T ss_pred hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHhhcCCHH
Confidence 466899999643 122333456689999999999999999998655534333 345556665554443
No 103
>PRK06620 hypothetical protein; Validated
Probab=39.71 E-value=1.3e+02 Score=27.45 Aligned_cols=65 Identities=6% Similarity=0.001 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCchh-------hhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCC
Q 039821 10 NTTSKVVFTTRFID-------VCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGL 77 (555)
Q Consensus 10 ~~gsrIivTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 77 (555)
..|..||+|++... ..+.+....+++++++++++-.+++.+.+.......++ ++..-|++++.|-
T Consensus 111 e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~---ev~~~L~~~~~~d 182 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISR---QIIDFLLVNLPRE 182 (214)
T ss_pred hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHccCC
Confidence 35678999988433 23334445689999999999888888877433323332 3455566555443
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=35.12 E-value=1.5e+02 Score=29.66 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=44.3
Q ss_pred CCcEEEEEeCchh-hhccc-CCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 039821 11 TTSKVVFTTRFID-VCGSM-ESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIG 85 (555)
Q Consensus 11 ~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 85 (555)
.+..+|++|.+.+ +.... .....+.+.+++.++..+.+........ . +....+++.++|.|+.+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~----~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP----D---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC----H---HHHHHHHHHcCCCHHHHHHHh
Confidence 3456666666553 32222 2245889999999999999987652211 1 112678999999998665543
No 105
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=32.04 E-value=1.9e+02 Score=28.17 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=44.5
Q ss_pred CCCcEEEEEeCchhhh-cc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHH
Q 039821 10 NTTSKVVFTTRFIDVC-GS-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITI 84 (555)
Q Consensus 10 ~~gsrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 84 (555)
.+++.+|++|.+.+.. .. ......+++.++++++....+.+...+-. .+....++..++|.|..+...
T Consensus 121 p~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 121 PKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred CCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 3678888888755432 11 11245889999999999887765542211 123667899999998655433
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=30.83 E-value=96 Score=31.00 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=42.0
Q ss_pred CCcEEEEEeCchhhh-----cccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCc
Q 039821 11 TTSKVVFTTRFIDVC-----GSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLP 78 (555)
Q Consensus 11 ~gsrIivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 78 (555)
.+.+||.||+..... .....+..+.++..+.++..++|..++.+.......+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 356788888854332 2222356789999999999999999885544222223 345666777764
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=30.21 E-value=1.5e+02 Score=30.79 Aligned_cols=77 Identities=5% Similarity=0.069 Sum_probs=52.2
Q ss_pred CCcEEEEEeCc---------hhhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 11 TTSKVVFTTRF---------IDVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 11 ~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
.|..||+|+.. +.+.+.+..+-++.+++++.++-.+++.+++-..+... .--+++..-|++.++|.|-.+
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L 316 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKI 316 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHH
Confidence 34568888653 23344445567889999999999999999884332110 111456788999999999777
Q ss_pred HHHHHHH
Q 039821 82 ITIGRAM 88 (555)
Q Consensus 82 ~~~~~~L 88 (555)
..+-..+
T Consensus 317 ~gaL~~l 323 (450)
T PRK14087 317 KGSVSRL 323 (450)
T ss_pred HHHHHHH
Confidence 7665444
No 108
>COG3899 Predicted ATPase [General function prediction only]
Probab=28.42 E-value=1.5e+02 Score=33.67 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=76.0
Q ss_pred CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHHhcC------CCHHHHHHHHHH
Q 039821 30 SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAMAYR------KKAEQWRRAIEE 103 (555)
Q Consensus 30 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~------~~~~~w~~~l~~ 103 (555)
....+.+.||+..|.-.+.....+... ....+....|.+|-+|.|+.+.-+-..+..+ .+...|..-...
T Consensus 210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~ 285 (849)
T COG3899 210 NITTITLAPLSRADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS 285 (849)
T ss_pred ceeEEecCcCchhhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh
Confidence 346899999999999999988875533 2224467899999999999999998888763 223345432211
Q ss_pred HhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCc
Q 039821 104 LRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDY 148 (555)
Q Consensus 104 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~ 148 (555)
+. ..... +.+...+..-.+.||. ..|..+-..|++...+
T Consensus 286 i~----~~~~~-~~vv~~l~~rl~kL~~-~t~~Vl~~AA~iG~~F 324 (849)
T COG3899 286 LG----ILATT-DAVVEFLAARLQKLPG-TTREVLKAAACIGNRF 324 (849)
T ss_pred cC----Cchhh-HHHHHHHHHHHhcCCH-HHHHHHHHHHHhCccC
Confidence 11 11122 2456668888899998 8898888888886443
No 109
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=27.86 E-value=71 Score=21.82 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHH
Q 039821 36 VACLSEEDAWELFREKVGQETLESDHEIVELAQTVA 71 (555)
Q Consensus 36 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 71 (555)
-.++++++|+.++.+.+-..+ ..+.+++..|+
T Consensus 25 ~~g~~e~~A~~~Lr~~Am~~~----~~l~~vA~~ii 56 (56)
T PF03861_consen 25 RYGLSEDEAYRLLRRQAMRRR----RSLADVAEEII 56 (56)
T ss_dssp HHT--HHHHHHHHHHHHHHCT----S-HHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHcC----CCHHHHHHHHC
Confidence 357899999999999985444 34556666653
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=27.22 E-value=2.4e+02 Score=25.69 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=36.6
Q ss_pred cceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 31 HRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 31 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
...++++++++++-..++.+.+-......++ +....+++.+.|.+..+..+-..+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~---~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLAD---EVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 4688999999988777777654332223332 356667777888887777666554
No 111
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=23.81 E-value=3.7e+02 Score=21.29 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHH--HhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHHhcC-CCHHHHHHHHHHHhhhhh
Q 039821 41 EEDAWELFRE--KVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAMAYR-KKAEQWRRAIEELRRSAS 109 (555)
Q Consensus 41 ~~ea~~Lf~~--~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~~w~~~l~~l~~~~~ 109 (555)
+.|.|++=+. .+|+.+..+.+.....+-+.+++..-.|+|+..+-+.-... ...+.|.-++++++....
T Consensus 23 ~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPtl~ 94 (108)
T PF02284_consen 23 DIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPTLE 94 (108)
T ss_dssp T--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhHHH
Confidence 3456666433 35777766778878888888899999999999887554322 223378877777766543
No 112
>PF14516 AAA_35: AAA-like domain
Probab=23.12 E-value=2.1e+02 Score=28.12 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=42.4
Q ss_pred cceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHHhc
Q 039821 31 HRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAMAY 90 (555)
Q Consensus 31 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~ 90 (555)
...+.|++++.+|...|..++-..-+ +. ...+|....+|+|.-+..++..+..
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~~~----~~---~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLEFS----QE---QLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhccCC----HH---HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35788999999999999987743211 22 2788999999999999999999965
No 113
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=22.90 E-value=51 Score=17.33 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=9.3
Q ss_pred ccEEEcCCCCCcccch
Q 039821 317 LELLDISHTSIRELPE 332 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~ 332 (555)
|..|++.+.+++++..
T Consensus 2 LVeL~m~~S~lekLW~ 17 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWE 17 (20)
T ss_pred cEEEECCCCChHHhcC
Confidence 4556666666665554
No 114
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=22.60 E-value=1.5e+02 Score=28.81 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=30.8
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCch
Q 039821 33 KFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPL 79 (555)
Q Consensus 33 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 79 (555)
+++|++++.+|+..++.-++-..-......-+...+++.-..+|.|-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~ 304 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPR 304 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHH
Confidence 78999999999999998887433211111223345566666688874
No 115
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=22.26 E-value=4e+02 Score=26.79 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred EEEEeCchhhhcccC-------CcceEEcCCCCHHHHHHHHHHHh---CCCCcCCchhHHHHHHHHHHHhCCCchHHHHH
Q 039821 15 VVFTTRFIDVCGSME-------SHRKFEVACLSEEDAWELFREKV---GQETLESDHEIVELAQTVAKECGGLPLALITI 84 (555)
Q Consensus 15 IivTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 84 (555)
||.+++...+..... ....+.+++++.++..+++...+ +......+..++.+++.+....|..+.|+..+
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 566766554433221 12467899999999999998876 22222233334444444444456677887776
Q ss_pred HH
Q 039821 85 GR 86 (555)
Q Consensus 85 ~~ 86 (555)
-.
T Consensus 256 ~~ 257 (394)
T PRK00411 256 RR 257 (394)
T ss_pred HH
Confidence 44
No 116
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.94 E-value=1.4e+02 Score=27.42 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=43.5
Q ss_pred CcEEEEEeCchhhhcccCC--cceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 12 TSKVVFTTRFIDVCGSMES--HRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 12 gsrIivTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
=+-|=.|||...+...+.. ....+++..+.+|-.++..+.+..-+...+ ++.+.+|++++.|-|--+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHH
Confidence 3456679998666554443 345689999999999999988855443332 456899999999999533
No 117
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=21.01 E-value=8.9e+02 Score=24.66 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=45.2
Q ss_pred CcEEEEEeCc---------hhhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchh-HHHHHHHHHHHhCCCchHH
Q 039821 12 TSKVVFTTRF---------IDVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHE-IVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 12 gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~-~~~~~~~i~~~c~glPLai 81 (555)
|-.||+|++. ..+.+.+...-++.+++.+++.....+.+++...+...+++ ..-++..+-+-..-+.-|+
T Consensus 208 ~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 208 GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 3479998862 23445555677999999999999999999886655445444 2334444444333344444
Q ss_pred H
Q 039821 82 I 82 (555)
Q Consensus 82 ~ 82 (555)
.
T Consensus 288 ~ 288 (408)
T COG0593 288 N 288 (408)
T ss_pred H
Confidence 3
No 118
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=20.65 E-value=3.3e+02 Score=27.13 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=41.8
Q ss_pred EEEEeCchhhhcccC-CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 039821 15 VVFTTRFIDVCGSME-SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIG 85 (555)
Q Consensus 15 IivTTR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 85 (555)
|++|++-..+..... ....+++.+++.++..+.+.......+ .+ .+....+++.++|.|..+..+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 455555433432221 235899999999999999987432211 11 2345788999999998665443
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=20.28 E-value=6.4e+02 Score=27.28 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=42.7
Q ss_pred CcEEEEEeCch---------hhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCC
Q 039821 12 TSKVVFTTRFI---------DVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGL 77 (555)
Q Consensus 12 gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 77 (555)
|..|||||+.. .+.+.+...-++.++..+++.-.+++.+++.......++ ++..-|++++.+.
T Consensus 410 gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~---eVi~yLa~r~~rn 481 (617)
T PRK14086 410 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPP---EVLEFIASRISRN 481 (617)
T ss_pred CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHhccCC
Confidence 55688888742 234455567789999999999999999998655544443 3445555555544
Done!