Query 039821
Match_columns 555
No_of_seqs 296 out of 2964
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 23:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-28 6.2E-33 257.8 14.1 190 11-215 264-471 (549)
2 4fcg_A Uncharacterized protein 99.9 2.3E-22 7.7E-27 197.7 14.8 229 261-527 80-309 (328)
3 3sfz_A APAF-1, apoptotic pepti 99.9 5.7E-22 2E-26 230.0 15.3 187 10-214 255-451 (1249)
4 3o6n_A APL1; leucine-rich repe 99.9 1.7E-21 5.8E-26 196.8 16.0 265 240-529 45-349 (390)
5 4fmz_A Internalin; leucine ric 99.9 1.1E-20 3.7E-25 187.8 19.6 276 224-529 50-343 (347)
6 3v47_A TOLL-like receptor 5B a 99.9 1.3E-20 4.5E-25 194.4 19.5 288 220-529 12-405 (455)
7 1vt4_I APAF-1 related killer D 99.9 7.6E-22 2.6E-26 211.0 10.1 164 11-208 264-436 (1221)
8 3oja_B Anopheles plasmodium-re 99.9 4.3E-21 1.5E-25 204.6 16.0 267 238-529 73-355 (597)
9 4fmz_A Internalin; leucine ric 99.8 1.9E-20 6.5E-25 186.0 16.3 265 235-529 39-321 (347)
10 2id5_A Lingo-1, leucine rich r 99.8 4.5E-20 1.5E-24 191.6 18.6 274 223-529 16-330 (477)
11 4fcg_A Uncharacterized protein 99.8 7.6E-21 2.6E-25 186.8 11.9 218 240-505 81-310 (328)
12 4ecn_A Leucine-rich repeat pro 99.8 1.4E-19 4.8E-24 197.8 17.9 279 236-528 444-785 (876)
13 1ogq_A PGIP-2, polygalacturona 99.8 3.4E-20 1.1E-24 181.1 11.5 244 240-530 50-302 (313)
14 3vq2_A TLR4, TOLL-like recepto 99.8 4.2E-19 1.4E-23 190.1 20.1 134 223-365 16-155 (606)
15 1o6v_A Internalin A; bacterial 99.8 5.7E-19 2E-23 182.5 19.8 93 229-330 57-149 (466)
16 1o6v_A Internalin A; bacterial 99.8 4.4E-19 1.5E-23 183.4 17.9 271 238-529 44-341 (466)
17 2id5_A Lingo-1, leucine rich r 99.8 5.5E-19 1.9E-23 183.4 17.8 267 243-529 14-306 (477)
18 3zyi_A Leucine-rich repeat-con 99.8 5.6E-19 1.9E-23 181.8 17.2 110 241-356 76-189 (452)
19 4eco_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 190.9 16.3 277 236-527 202-544 (636)
20 2z81_A CD282 antigen, TOLL-lik 99.8 9.2E-19 3.1E-23 185.1 18.8 154 226-386 13-179 (549)
21 3t6q_A CD180 antigen; protein- 99.8 9.4E-19 3.2E-23 187.3 18.8 297 222-529 16-410 (606)
22 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-18 4.1E-23 182.9 18.9 119 222-349 4-126 (520)
23 3o6n_A APL1; leucine-rich repe 99.8 5.2E-19 1.8E-23 178.5 15.2 247 259-529 42-328 (390)
24 1z6t_A APAF-1, apoptotic prote 99.8 4.8E-19 1.6E-23 188.8 15.7 182 11-211 256-448 (591)
25 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 179.0 17.7 111 240-356 64-178 (440)
26 3rgz_A Protein brassinosteroid 99.8 3.5E-19 1.2E-23 195.4 14.4 278 235-529 218-548 (768)
27 2z63_A TOLL-like receptor 4, v 99.8 6.3E-19 2.1E-23 187.3 15.9 111 238-355 50-165 (570)
28 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-18 4.2E-23 178.8 16.8 190 226-447 50-244 (457)
29 3rgz_A Protein brassinosteroid 99.8 1.1E-18 3.6E-23 191.6 16.8 274 239-530 393-738 (768)
30 2z80_A TOLL-like receptor 2, v 99.8 7.6E-19 2.6E-23 174.8 14.2 263 223-529 36-311 (353)
31 2ft3_A Biglycan; proteoglycan, 99.8 2E-18 7E-23 170.1 17.1 119 222-349 37-158 (332)
32 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-18 7.8E-23 186.9 19.1 221 221-449 7-285 (680)
33 3j0a_A TOLL-like receptor 5; m 99.8 6.2E-18 2.1E-22 187.4 22.9 137 221-365 7-150 (844)
34 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-18 3.7E-23 186.9 15.5 259 236-529 281-555 (606)
35 3zyi_A Leucine-rich repeat-con 99.8 3.1E-18 1.1E-22 176.3 17.9 239 243-529 57-300 (452)
36 2z66_A Variable lymphocyte rec 99.8 1.4E-18 5E-23 169.1 14.0 87 262-355 28-117 (306)
37 3zyj_A Leucine-rich repeat-con 99.8 4.4E-18 1.5E-22 174.5 18.0 239 243-529 46-289 (440)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.4E-18 3.2E-22 177.7 21.1 120 221-349 34-157 (562)
39 4ecn_A Leucine-rich repeat pro 99.8 1.9E-18 6.5E-23 188.9 15.9 268 238-530 489-838 (876)
40 4eco_A Uncharacterized protein 99.8 3E-18 1E-22 183.7 17.1 267 238-529 247-597 (636)
41 3t6q_A CD180 antigen; protein- 99.8 3E-18 1E-22 183.4 17.1 264 236-529 274-557 (606)
42 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-18 4.6E-23 169.7 13.0 222 262-529 50-278 (313)
43 1xku_A Decorin; proteoglycan, 99.8 5E-18 1.7E-22 167.2 16.7 251 242-530 33-304 (330)
44 2z66_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 166.2 15.4 241 221-507 10-259 (306)
45 3oja_B Anopheles plasmodium-re 99.8 3.3E-18 1.1E-22 182.3 15.2 268 238-529 49-334 (597)
46 2z63_A TOLL-like receptor 4, v 99.8 5E-18 1.7E-22 180.4 16.5 140 221-369 10-156 (570)
47 2z80_A TOLL-like receptor 2, v 99.8 3E-18 1E-22 170.5 13.2 216 245-506 36-259 (353)
48 1xku_A Decorin; proteoglycan, 99.8 6.2E-17 2.1E-21 159.3 22.0 274 222-529 35-329 (330)
49 3v47_A TOLL-like receptor 5B a 99.7 1.3E-17 4.5E-22 171.9 16.7 264 244-529 14-381 (455)
50 3g06_A SSPH2 (leucine-rich rep 99.7 3E-17 1E-21 173.6 18.8 250 221-529 43-294 (622)
51 2z7x_B TOLL-like receptor 1, v 99.7 5.1E-17 1.7E-21 170.5 18.4 103 236-349 41-149 (520)
52 2ft3_A Biglycan; proteoglycan, 99.7 7.8E-17 2.7E-21 158.8 18.5 265 241-530 34-331 (332)
53 3bz5_A Internalin-J, INLJ; leu 99.7 2.8E-17 9.6E-22 168.7 15.8 269 236-543 38-330 (457)
54 2z81_A CD282 antigen, TOLL-lik 99.7 1.2E-17 4.2E-22 176.5 13.3 123 236-365 46-174 (549)
55 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-18 4.3E-23 170.3 4.6 134 375-532 140-275 (317)
56 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-17 1.4E-21 157.0 14.7 214 245-506 16-235 (285)
57 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-16 3.7E-21 172.2 18.3 117 225-348 38-158 (635)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-16 4.1E-21 169.2 18.2 139 241-389 32-179 (562)
59 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-16 5.4E-21 153.0 15.1 216 223-483 16-236 (285)
60 1ziw_A TOLL-like receptor 3; i 99.7 2.5E-16 8.5E-21 170.9 17.5 139 243-389 7-155 (680)
61 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5E-21 154.8 12.8 195 238-489 39-233 (308)
62 3j0a_A TOLL-like receptor 5; m 99.7 3.4E-16 1.2E-20 173.5 16.8 267 243-530 7-373 (844)
63 3oja_A Leucine-rich immune mol 99.7 4.3E-17 1.5E-21 168.8 9.0 214 240-508 34-249 (487)
64 1h6u_A Internalin H; cell adhe 99.7 1.8E-16 6.3E-21 154.1 12.5 204 252-514 31-234 (308)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-16 4.5E-21 155.9 11.1 214 259-529 31-247 (317)
66 1jl5_A Outer protein YOPM; leu 99.7 1.8E-15 6.3E-20 155.0 19.5 134 240-389 111-247 (454)
67 2xwt_C Thyrotropin receptor; s 99.7 2.4E-16 8.3E-21 147.4 11.8 199 263-509 32-239 (239)
68 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.8E-21 148.5 10.4 110 241-356 32-148 (239)
69 1jl5_A Outer protein YOPM; leu 99.7 2E-15 6.8E-20 154.7 18.2 70 413-506 297-367 (454)
70 3rfs_A Internalin B, repeat mo 99.7 2.3E-16 7.7E-21 150.7 9.9 175 237-446 38-215 (272)
71 3rfs_A Internalin B, repeat mo 99.7 5.1E-16 1.7E-20 148.2 12.1 221 244-520 23-246 (272)
72 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 145.0 14.5 195 241-482 17-215 (270)
73 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.6E-20 146.5 14.2 195 239-482 9-205 (290)
74 3g06_A SSPH2 (leucine-rich rep 99.6 4.3E-15 1.5E-19 157.2 19.1 231 221-507 64-295 (622)
75 1wwl_A Monocyte differentiatio 99.6 2.9E-16 9.8E-21 153.2 9.0 202 260-505 93-305 (312)
76 1wwl_A Monocyte differentiatio 99.6 2.8E-16 9.6E-21 153.2 6.3 240 240-529 43-306 (312)
77 2z62_A TOLL-like receptor 4, v 99.6 4.9E-15 1.7E-19 141.8 14.7 102 241-348 29-134 (276)
78 2z62_A TOLL-like receptor 4, v 99.6 4.8E-15 1.6E-19 141.8 14.4 197 262-505 28-233 (276)
79 4ay9_X Follicle-stimulating ho 99.6 2.9E-15 9.8E-20 148.5 13.0 235 222-505 13-255 (350)
80 4ay9_X Follicle-stimulating ho 99.6 2.4E-15 8.1E-20 149.1 11.5 238 244-527 13-254 (350)
81 1p9a_G Platelet glycoprotein I 99.6 5.2E-15 1.8E-19 142.4 13.3 196 259-506 7-205 (290)
82 3oja_A Leucine-rich immune mol 99.6 2.1E-15 7.3E-20 156.0 11.1 214 259-529 31-247 (487)
83 2o6q_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 137.9 15.8 192 221-447 19-216 (270)
84 2ast_B S-phase kinase-associat 99.6 9.7E-16 3.3E-20 151.2 5.6 228 240-513 70-309 (336)
85 2ast_B S-phase kinase-associat 99.6 1.2E-15 4.1E-20 150.5 5.9 239 241-529 48-303 (336)
86 1h6t_A Internalin B; cell adhe 99.6 1.4E-14 4.7E-19 139.5 12.1 168 238-447 44-211 (291)
87 1h6t_A Internalin B; cell adhe 99.5 1.6E-14 5.5E-19 139.1 10.1 180 247-482 31-210 (291)
88 1m9s_A Internalin B; cell inva 99.5 1.4E-14 4.7E-19 153.1 8.5 173 235-449 38-210 (605)
89 1m9s_A Internalin B; cell inva 99.5 3.5E-14 1.2E-18 150.0 11.5 183 245-483 26-208 (605)
90 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 130.0 13.5 171 242-447 16-190 (251)
91 4glp_A Monocyte differentiatio 99.5 2.4E-14 8E-19 139.4 7.1 33 316-348 146-179 (310)
92 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 141.0 4.8 201 285-529 89-304 (310)
93 2ca6_A RAN GTPase-activating p 99.5 4.6E-15 1.6E-19 149.3 0.7 119 375-507 183-314 (386)
94 3m19_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 126.9 13.4 146 264-446 16-165 (251)
95 4ezg_A Putative uncharacterize 99.5 2.1E-13 7.3E-18 123.2 11.4 148 261-447 43-192 (197)
96 2ca6_A RAN GTPase-activating p 99.5 3.7E-14 1.3E-18 142.6 6.9 220 240-482 32-313 (386)
97 1z7x_W Ribonuclease inhibitor; 99.4 8.7E-15 3E-19 151.0 -0.4 108 239-348 27-152 (461)
98 1xeu_A Internalin C; cellular 99.4 1E-13 3.5E-18 131.3 6.5 162 242-446 21-182 (263)
99 4ezg_A Putative uncharacterize 99.4 2.4E-13 8.2E-18 122.8 8.2 127 285-446 42-169 (197)
100 1z7x_W Ribonuclease inhibitor; 99.4 1.2E-14 4.1E-19 150.0 -1.2 147 238-389 54-237 (461)
101 1xeu_A Internalin C; cellular 99.4 1E-13 3.5E-18 131.2 5.2 168 259-483 16-183 (263)
102 3goz_A Leucine-rich repeat-con 99.4 3.1E-13 1.1E-17 134.5 7.8 102 241-348 23-148 (362)
103 2o6s_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 121.1 9.3 89 261-356 27-117 (208)
104 3cvr_A Invasion plasmid antige 99.4 3.1E-12 1E-16 133.7 15.2 181 241-489 60-247 (571)
105 3ogk_B Coronatine-insensitive 99.4 2.4E-13 8.2E-18 144.9 5.0 86 260-348 218-303 (592)
106 3e6j_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 116.1 12.4 143 223-389 24-169 (229)
107 4g8a_A TOLL-like receptor 4; l 99.3 8E-12 2.8E-16 134.1 14.7 254 239-528 305-576 (635)
108 2o6s_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 114.9 11.5 175 222-437 11-190 (208)
109 2p1m_B Transport inhibitor res 99.3 7.4E-13 2.5E-17 141.1 5.6 78 240-323 156-243 (594)
110 2p1m_B Transport inhibitor res 99.3 9.4E-13 3.2E-17 140.3 6.3 124 240-365 105-237 (594)
111 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 113.6 12.2 145 221-389 14-162 (220)
112 2xot_A Amphoterin-induced prot 99.3 4.5E-12 1.5E-16 126.0 9.2 171 245-447 23-200 (361)
113 1dce_A Protein (RAB geranylger 99.3 1.3E-13 4.3E-18 144.8 -3.5 189 284-516 346-552 (567)
114 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 126.2 14.4 184 223-454 64-248 (571)
115 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 3.9E-16 113.7 9.8 105 244-356 15-121 (220)
116 3goz_A Leucine-rich repeat-con 99.3 9.2E-12 3.2E-16 123.8 9.9 227 259-507 19-295 (362)
117 3ogk_B Coronatine-insensitive 99.3 7.8E-13 2.7E-17 140.9 1.3 259 240-529 112-413 (592)
118 3e6j_A Variable lymphocyte rec 99.2 2.5E-11 8.7E-16 112.2 11.1 145 265-447 22-170 (229)
119 2v70_A SLIT-2, SLIT homolog 2 99.2 3.1E-11 1E-15 110.9 11.4 143 223-389 16-163 (220)
120 2v70_A SLIT-2, SLIT homolog 2 99.2 2.8E-11 9.5E-16 111.2 10.4 103 244-354 15-120 (220)
121 2ell_A Acidic leucine-rich nuc 99.2 2.6E-11 8.7E-16 106.3 9.5 126 240-390 24-158 (168)
122 1dce_A Protein (RAB geranylger 99.2 4.1E-13 1.4E-17 141.0 -2.8 197 259-502 346-566 (567)
123 2xot_A Amphoterin-induced prot 99.2 4.5E-11 1.5E-15 118.8 10.4 173 221-424 21-200 (361)
124 4b8c_D Glucose-repressible alc 99.2 4.8E-12 1.7E-16 137.0 3.6 150 240-424 173-327 (727)
125 2je0_A Acidic leucine-rich nuc 99.2 9.8E-11 3.4E-15 100.3 10.3 108 240-356 17-130 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.2 3.4E-11 1.2E-15 106.4 7.4 132 237-390 16-151 (176)
127 4b8c_D Glucose-repressible alc 99.1 3.3E-11 1.1E-15 130.5 3.5 107 259-390 221-327 (727)
128 2ell_A Acidic leucine-rich nuc 99.0 6.1E-10 2.1E-14 97.4 9.8 128 222-356 28-164 (168)
129 2wfh_A SLIT homolog 2 protein 99.0 5.2E-10 1.8E-14 100.2 9.5 64 287-356 31-95 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.0 5.7E-10 1.9E-14 98.5 9.2 122 222-349 23-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.7E-14 97.5 10.7 122 243-389 13-136 (193)
132 2o6r_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 96.5 10.1 106 244-357 11-118 (177)
133 1w8a_A SLIT protein; signaling 99.0 8.8E-10 3E-14 98.7 9.3 123 243-389 11-136 (192)
134 1ds9_A Outer arm dynein; leuci 99.0 2.5E-11 8.6E-16 109.5 -1.1 116 303-451 37-155 (198)
135 2je0_A Acidic leucine-rich nuc 98.9 3.4E-09 1.2E-13 90.5 10.1 120 222-347 21-149 (149)
136 1w8a_A SLIT protein; signaling 98.9 3.2E-09 1.1E-13 95.0 10.0 126 221-353 11-141 (192)
137 2o6r_A Variable lymphocyte rec 98.9 7.4E-09 2.5E-13 91.3 10.8 126 223-355 12-141 (177)
138 1ds9_A Outer arm dynein; leuci 98.9 4.9E-11 1.7E-15 107.6 -3.7 66 283-355 44-109 (198)
139 2r9u_A Variable lymphocyte rec 98.8 8.4E-09 2.9E-13 90.6 9.0 106 243-356 15-122 (174)
140 3sb4_A Hypothetical leucine ri 98.8 1.2E-08 4.1E-13 99.8 9.3 183 313-515 100-315 (329)
141 3g39_A Variable lymphocyte rec 98.8 1.8E-08 6.2E-13 88.1 8.7 101 242-349 11-113 (170)
142 3sb4_A Hypothetical leucine ri 98.7 2.7E-08 9.1E-13 97.3 9.0 170 261-479 100-328 (329)
143 2r9u_A Variable lymphocyte rec 98.7 2.2E-08 7.7E-13 87.8 7.4 99 265-389 15-115 (174)
144 3g39_A Variable lymphocyte rec 98.7 2.9E-08 9.9E-13 86.8 7.3 100 264-389 11-112 (170)
145 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.1E-11 87.0 18.6 225 263-527 136-378 (401)
146 4fdw_A Leucine rich hypothetic 98.6 5.2E-07 1.8E-11 90.3 14.9 228 260-528 111-354 (401)
147 2ifg_A High affinity nerve gro 98.5 2.8E-07 9.7E-12 90.7 8.3 100 245-349 13-114 (347)
148 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.6E-11 89.2 7.0 86 266-359 12-100 (347)
149 3un9_A NLR family member X1; l 98.3 2.4E-07 8.3E-12 91.8 2.6 35 412-447 210-250 (372)
150 3e4g_A ATP synthase subunit S, 98.2 8.3E-07 2.8E-11 76.6 4.3 90 411-512 59-155 (176)
151 3un9_A NLR family member X1; l 98.1 5.5E-07 1.9E-11 89.2 2.1 161 240-424 72-250 (372)
152 2ra8_A Uncharacterized protein 98.1 2.4E-06 8E-11 84.0 6.1 63 434-506 250-317 (362)
153 2ra8_A Uncharacterized protein 98.0 5.2E-06 1.8E-10 81.5 6.3 64 411-482 250-317 (362)
154 3e4g_A ATP synthase subunit S, 98.0 2E-06 6.9E-11 74.2 2.8 39 413-451 114-154 (176)
155 4fs7_A Uncharacterized protein 97.8 0.0003 1E-08 70.2 14.7 58 467-528 315-375 (394)
156 3rw6_A Nuclear RNA export fact 97.4 0.00028 9.7E-09 65.5 7.6 69 284-355 167-237 (267)
157 4gt6_A Cell surface protein; l 97.3 0.0031 1.1E-07 62.7 13.9 104 412-534 264-372 (394)
158 4fs7_A Uncharacterized protein 97.2 0.001 3.5E-08 66.3 9.6 77 411-504 295-374 (394)
159 1io0_A Tropomodulin; LRR prote 97.1 0.00043 1.5E-08 60.9 5.0 89 259-348 33-133 (185)
160 4h09_A Hypothetical leucine ri 97.0 0.017 5.7E-07 57.0 16.1 13 468-480 282-294 (379)
161 2fna_A Conserved hypothetical 96.9 0.016 5.5E-07 56.4 14.5 169 11-207 169-355 (357)
162 2qen_A Walker-type ATPase; unk 96.8 0.026 8.9E-07 54.7 15.6 172 11-208 163-348 (350)
163 1io0_A Tropomodulin; LRR prote 96.8 0.00083 2.8E-08 59.0 4.1 108 240-349 36-162 (185)
164 4gt6_A Cell surface protein; l 96.5 0.019 6.4E-07 57.0 12.2 78 411-505 286-366 (394)
165 4h09_A Hypothetical leucine ri 96.5 0.064 2.2E-06 52.7 16.0 75 240-324 46-122 (379)
166 3rw6_A Nuclear RNA export fact 96.5 0.0039 1.3E-07 57.9 6.5 81 259-345 167-258 (267)
167 1w5s_A Origin recognition comp 94.9 0.1 3.4E-06 51.9 10.1 161 13-193 180-371 (412)
168 3rfe_A Platelet glycoprotein I 94.8 0.032 1.1E-06 45.4 4.8 52 291-349 12-66 (130)
169 3rfe_A Platelet glycoprotein I 92.4 0.11 3.6E-06 42.3 3.9 53 318-389 11-65 (130)
170 1njg_A DNA polymerase III subu 91.3 0.51 1.8E-05 42.4 7.9 75 11-88 155-231 (250)
171 1hqc_A RUVB; extended AAA-ATPa 90.9 0.46 1.6E-05 45.2 7.3 74 12-88 138-214 (324)
172 2gkw_B Tumor necrosis factor r 85.9 0.58 2E-05 24.4 2.2 20 2-22 1-20 (26)
173 1pgv_A TMD-1, tropomodulin TMD 81.5 2.6 8.8E-05 36.7 6.0 89 259-348 38-136 (197)
174 2v1u_A Cell division control p 81.3 17 0.00059 34.9 12.9 160 11-193 166-351 (387)
175 2chg_A Replication factor C sm 78.2 5.7 0.00019 34.6 7.6 73 11-86 131-205 (226)
176 1pgv_A TMD-1, tropomodulin TMD 77.5 2.5 8.5E-05 36.8 4.7 70 281-352 35-111 (197)
177 2qby_B CDC6 homolog 3, cell di 76.8 53 0.0018 31.3 16.9 158 11-193 163-339 (384)
178 2qby_A CDC6 homolog 1, cell di 66.9 26 0.0009 33.5 9.9 67 12-82 163-242 (386)
179 1fnn_A CDC6P, cell division co 66.1 45 0.0015 31.9 11.5 160 11-193 158-351 (389)
180 1sxj_B Activator 1 37 kDa subu 60.3 20 0.00069 33.4 7.5 73 11-86 136-211 (323)
181 3bos_A Putative DNA replicatio 49.8 27 0.00094 30.6 6.2 50 32-84 167-216 (242)
182 1iqp_A RFCS; clamp loader, ext 46.8 51 0.0017 30.5 7.9 75 11-88 139-215 (327)
183 2z4s_A Chromosomal replication 40.7 36 0.0012 33.7 5.8 70 11-83 226-304 (440)
184 1jr3_A DNA polymerase III subu 31.7 1E+02 0.0036 29.1 7.5 73 11-86 148-222 (373)
185 2chq_A Replication factor C sm 26.1 1.6E+02 0.0056 26.8 7.6 72 11-85 131-204 (319)
186 3h4m_A Proteasome-activating n 23.8 2.7E+02 0.0092 24.9 8.5 69 11-83 155-229 (285)
187 1sxj_E Activator 1 40 kDa subu 23.1 1.4E+02 0.0046 28.0 6.5 72 11-85 163-237 (354)
188 2vda_B Maltoporin; sugar trans 21.9 46 0.0016 17.5 1.4 16 75-90 9-24 (28)
189 1sxj_A Activator 1 95 kDa subu 21.2 2.9E+02 0.0099 27.6 8.7 72 13-87 180-255 (516)
190 1d2n_A N-ethylmaleimide-sensit 20.4 4.4E+02 0.015 23.2 9.2 86 12-106 167-263 (272)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1.8e-28 Score=257.77 Aligned_cols=190 Identities=13% Similarity=0.179 Sum_probs=154.5
Q ss_pred CCcEEEEEeCchhhhcccC-CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 039821 11 TTSKVVFTTRFIDVCGSME-SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAMA 89 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 89 (555)
+||+||||||++.|+..++ ...+|+|++|+++|||+||.++||... .++++.+++++|+++|+|+||||+++|+.|+
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~ 341 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 7999999999999998876 446899999999999999999998754 2467889999999999999999999999997
Q ss_pred cCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHh-----------HhcCCCCCcccchHHHHHH
Q 039821 90 YRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFL-----------YCCLYPEDYDILKWDLIDC 158 (555)
Q Consensus 90 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~s~Fp~~~~i~~~~li~~ 158 (555)
.+ + |..+ +.+....+... ..++..++.+||++||. ++|.||+ |||+||+++.|+ +++
T Consensus 342 ~~-~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~ 409 (549)
T 2a5y_B 342 PK-T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKL 409 (549)
T ss_dssp SS-S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHH
T ss_pred cc-h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eee
Confidence 63 3 4433 34444333221 24789999999999998 9999999 999999999999 889
Q ss_pred HHHh--CCCCCCc-ccChHHhHHHHHHHHHHhcccccc---CCCeEEechhhHHHHHHHHhhh
Q 039821 159 WIGE--GFLGESD-RFGAENQGYDILDTLVRACLLEEV---EDDKVKMHDVIRDMALWITGEI 215 (555)
Q Consensus 159 w~ae--g~~~~~~-~~~~~~~~~~~l~~Lv~~sli~~~---~~~~~~mhdl~~~~~~~~~~~~ 215 (555)
|+|+ ||+...+ ....++++. ++++|++++|++.. ....|+|||++|++|+.++.+.
T Consensus 410 w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 410 WSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred eeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 9999 9998755 667788887 99999999999876 3457999999999999887653
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.3e-22 Score=197.72 Aligned_cols=229 Identities=20% Similarity=0.284 Sum_probs=186.4
Q ss_pred CCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCC
Q 039821 261 CPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNL 340 (555)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L 340 (555)
..+++.|++.++. +..+|.. +..+++|++|++++| . +..+|..++.+. +|++|++++|.+..+|..++.+++|
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~n-~---l~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQ-AFRLSHLQHMTIDAA-G---LMELPDTMQQFA-GLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSC-GGGGTTCSEEEEESS-C---CCCCCSCGGGGT-TCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCC-chhcChh-hhhCCCCCEEECCCC-C---ccchhHHHhccC-CCCEEECCCCccccCcHHHhcCcCC
Confidence 4667778887544 6677766 566999999999999 5 668999999998 9999999999999999999999999
Q ss_pred cEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEE
Q 039821 341 KCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTI 420 (555)
Q Consensus 341 ~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l 420 (555)
++|++++|..+..+|.. ++... ....++++++|++|+++++ .++.++.. ...+++|+.|++
T Consensus 153 ~~L~L~~n~~~~~~p~~-~~~~~-------~~~~~~~l~~L~~L~L~~n-~l~~lp~~----------l~~l~~L~~L~L 213 (328)
T 4fcg_A 153 RELSIRACPELTELPEP-LASTD-------ASGEHQGLVNLQSLRLEWT-GIRSLPAS----------IANLQNLKSLKI 213 (328)
T ss_dssp CEEEEEEETTCCCCCSC-SEEEC--------CCCEEESTTCCEEEEEEE-CCCCCCGG----------GGGCTTCCEEEE
T ss_pred CEEECCCCCCccccChh-Hhhcc-------chhhhccCCCCCEEECcCC-CcCcchHh----------hcCCCCCCEEEc
Confidence 99999998788888874 22110 0113456888999988887 34444332 337899999999
Q ss_pred eecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcce
Q 039821 421 HICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKE 500 (555)
Q Consensus 421 ~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~ 500 (555)
++|.....++.++.+++|++|++++|...+.++. .++.+++|+.|++++|..+..+|.....+++|+.
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred cCCCCCcCchhhccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 9995544455788999999999999987776654 6788999999999999999999988889999999
Q ss_pred EEEcCCCCCCccCCCCCccc-ccceEEe
Q 039821 501 MVVRGCDQLEKLPLDSNSAK-ERKFVIR 527 (555)
Q Consensus 501 L~l~~C~~L~~lp~~~~~~~-L~~l~i~ 527 (555)
|++++|+.++.+|.....++ ++.+.+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999999999999888877 7777766
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=5.7e-22 Score=230.04 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=155.8
Q ss_pred CCCcEEEEEeCchhhhcc-cCCcceEEcCC-CCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHH
Q 039821 10 NTTSKVVFTTRFIDVCGS-MESHRKFEVAC-LSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRA 87 (555)
Q Consensus 10 ~~gsrIivTTR~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 87 (555)
.+|||||||||++.|+.. +.....+.+++ |+++||++||...++... +++.+++++|+++|+|+||||+++|++
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~ 330 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGAL 330 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHH
Confidence 479999999999999854 55667899996 999999999999986543 333456899999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHhhhhhhcc-----CCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHHHh
Q 039821 88 MAYRKKAEQWRRAIEELRRSASEFA-----GLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWIGE 162 (555)
Q Consensus 88 L~~~~~~~~w~~~l~~l~~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~ae 162 (555)
|+.+. ..|..+++.+.......- .....+..++.+||+.|++ +.|.||+|||+||+++.|+++.++.+|.++
T Consensus 331 l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 331 LRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 98754 469999988876543211 1113689999999999999 899999999999999999999999999544
Q ss_pred CCCCCCcccChHHhHHHHHHHHHHhccccccCCC---eEEechhhHHHHHHHHhh
Q 039821 163 GFLGESDRFGAENQGYDILDTLVRACLLEEVEDD---KVKMHDVIRDMALWITGE 214 (555)
Q Consensus 163 g~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~~~~---~~~mhdl~~~~~~~~~~~ 214 (555)
++.+++++++|++++|++....+ .|+||+++|++++..+.+
T Consensus 408 -----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 408 -----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp -----------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred -----------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 46778899999999999876333 599999999999987654
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.7e-21 Score=196.79 Aligned_cols=265 Identities=17% Similarity=0.180 Sum_probs=124.7
Q ss_pred cceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhcc
Q 039821 240 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSS 316 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~ 316 (555)
.+++++++.++.+..++. ...+++|++|++.++. +..+++..|..+++|++|++++| . +..+| ..++.+. +
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-A---IRYLPPHVFQNVP-L 118 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-C---CCCCCTTTTTTCT-T
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-C---CCcCCHHHhcCCC-C
Confidence 345555555554444443 2344555555555332 34444434455555555555555 2 33332 2244444 5
Q ss_pred ccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccc------------------------cccccC
Q 039821 317 LELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRD------------------------TTSVID 371 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L------------------------~L~~~~ 371 (555)
|++|++++|.+..+|.. ++.+++|++|++++| .+..+++..++.+.+| .++...
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc
Confidence 55555555555555543 244555555555555 3334433334444444 222222
Q ss_pred ccccCCCcccccccccccc----------ccceeeecccccccccccccccccccEEEEeecCCCCc-ccccccCCCCce
Q 039821 372 ATAFADLNHLNELWIDRAK----------ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD-TTFLVFAPNLKS 440 (555)
Q Consensus 372 ~~~l~~l~~L~~L~l~~~~----------~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~l~~l~~L~~ 440 (555)
...+...++|++|+++++. .++.+.++.+..... .....+++|+.|++++|..... +..+..+++|++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 2233333344444444331 122222222222111 1122344455555554422111 123444555555
Q ss_pred EEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc
Q 039821 441 LSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK 520 (555)
Q Consensus 441 L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~ 520 (555)
|++++|.. . .++.....+++|+.|+++++ .+..++.....+++|+.|++++|+ ++.+|. ...+
T Consensus 277 L~L~~n~l-~------------~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~--~~~~ 339 (390)
T 3o6n_A 277 LYISNNRL-V------------ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL--STHH 339 (390)
T ss_dssp EECCSSCC-C------------EEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC--CTTC
T ss_pred EECCCCcC-c------------ccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCc--hhhc
Confidence 55554421 1 11223456777888888775 566666666667888888887764 666663 2233
Q ss_pred -ccceEEech
Q 039821 521 -ERKFVIRGE 529 (555)
Q Consensus 521 -L~~l~i~~~ 529 (555)
|+.++++++
T Consensus 340 ~L~~L~l~~N 349 (390)
T 3o6n_A 340 TLKNLTLSHN 349 (390)
T ss_dssp CCSEEECCSS
T ss_pred cCCEEEcCCC
Confidence 788888754
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.1e-20 Score=187.77 Aligned_cols=276 Identities=17% Similarity=0.152 Sum_probs=133.8
Q ss_pred EEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccc
Q 039821 224 VCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSN 303 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 303 (555)
...+.....++......++++|++.++.+..++....+++|++|++.++. +..++. +..+++|++|++++| . +
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n-~---i 122 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNED-N---I 122 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTS-C---C
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCC-c---c
Confidence 33344444444455556666666666666665556666666666666442 444432 566666666666666 3 4
Q ss_pred cccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--cc---ccCC
Q 039821 304 FQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT---AFAD 377 (555)
Q Consensus 304 ~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~---~l~~ 377 (555)
..+|. +..+. +|++|++++|.....+..+..+++|++|++++| .+..++. ++.+.+| .|+..+ +. .+..
T Consensus 123 ~~~~~-~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (347)
T 4fmz_A 123 SDISP-LANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLAS 197 (347)
T ss_dssp CCCGG-GTTCT-TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGG
T ss_pred cCchh-hccCC-ceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccccC
Confidence 44443 55554 666666666633333333555666666666665 3444443 4444444 222221 11 2334
Q ss_pred Cccccccccccc-----------cccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecC
Q 039821 378 LNHLNELWIDRA-----------KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHC 446 (555)
Q Consensus 378 l~~L~~L~l~~~-----------~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~ 446 (555)
+++|+.|.++++ ..++.+.++.+.....+. ...+++|+.|++++| .++.++.+..+++|++|++++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC
Confidence 444444444332 122222222222222222 224555555555554 3334444555555555555555
Q ss_pred CcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceE
Q 039821 447 GAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFV 525 (555)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~ 525 (555)
.. ..+ ..+..+++|+.|++++|.--...+.....+++|+.|++++|+ ++.++. ...++ |+.++
T Consensus 276 ~l-~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 276 QI-SDI-------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CC-CCC-------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEES
T ss_pred cc-CCC-------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceee
Confidence 21 111 123455666666666653222222334456666666666664 444443 22233 66666
Q ss_pred Eech
Q 039821 526 IRGE 529 (555)
Q Consensus 526 i~~~ 529 (555)
+++|
T Consensus 340 l~~N 343 (347)
T 4fmz_A 340 FANQ 343 (347)
T ss_dssp SSCC
T ss_pred hhhh
Confidence 5554
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.3e-20 Score=194.43 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=188.0
Q ss_pred ccEEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCC
Q 039821 220 RNFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 297 (555)
...+.+.+.++..+|. -..++++|+++++.+..+. .+..+++|++|+++++.....+++..|.++++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3445566667777776 3478999999999887753 35889999999999776444666677888999999999998
Q ss_pred CCCccccc-cChhHhhhhccccEEEcCCCCCcc-cchh--hhCCCCCcEEccCCCcccccc-chHHHhccccc-cccccC
Q 039821 298 GKSWSNFQ-LPVGMSELGSSLELLDISHTSIRE-LPEE--LKKLVNLKCLNLRRTELLNKI-PRQLISNSSRD-TTSVID 371 (555)
Q Consensus 298 ~~~~~~~~-lp~~~~~l~~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L-~L~~~~ 371 (555)
. +.. .|..++.+. +|++|++++|.+.. .|.. ++.+++|++|++++|. +..+ |...++.+.+| .|++..
T Consensus 90 -~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 90 -Q---FLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp -T---TCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTT
T ss_pred -c---cCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCC
Confidence 4 444 477788887 99999999998875 3443 7888899999998884 5554 54446666666 333322
Q ss_pred --cc-----cc----------------------------------CCCcccccccccccc----------------ccce
Q 039821 372 --AT-----AF----------------------------------ADLNHLNELWIDRAK----------------ELEL 394 (555)
Q Consensus 372 --~~-----~l----------------------------------~~l~~L~~L~l~~~~----------------~l~~ 394 (555)
+. .+ ..+++|++|+++++. .++.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 11 11 123567777776652 2222
Q ss_pred ------------------------------------eeeccccccc-ccccccccccccEEEEeecCCCCccc-ccccCC
Q 039821 395 ------------------------------------LKIDYTEIVR-KRREPFVFRSLHCVTIHICQKLKDTT-FLVFAP 436 (555)
Q Consensus 395 ------------------------------------l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~ 436 (555)
+.++.+.... .+.....+++|+.|++++|.....++ .+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 2222221111 12223345666666666663222222 555666
Q ss_pred CCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc-cccccCCCCcceEEEcCCCCCCccCCC
Q 039821 437 NLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI-YWKPLPFTHLKEMVVRGCDQLEKLPLD 515 (555)
Q Consensus 437 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~~~~L~~L~l~~C~~L~~lp~~ 515 (555)
+|++|++++|...+..+ ..++.+++|++|+++++ .+..+ +.....+++|+.|+++++ +++.+|..
T Consensus 324 ~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHh
Confidence 66666666664322111 24677889999999986 45555 556677899999999985 78888875
Q ss_pred C-Cccc-ccceEEech
Q 039821 516 S-NSAK-ERKFVIRGE 529 (555)
Q Consensus 516 ~-~~~~-L~~l~i~~~ 529 (555)
. ..++ |+.++++++
T Consensus 390 ~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhccCCcccEEEccCC
Confidence 4 4555 899999864
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=7.6e-22 Score=210.99 Aligned_cols=164 Identities=15% Similarity=0.262 Sum_probs=135.9
Q ss_pred CCcEEEEEeCchhhhcccCCcceEEcC------CCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHH
Q 039821 11 TTSKVVFTTRFIDVCGSMESHRKFEVA------CLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITI 84 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 84 (555)
+|||||||||++.++..+.....|.|+ +|+++|||+||.+...... .++..+| |+|+||||+++
T Consensus 264 pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLa 333 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSII 333 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHH
T ss_pred CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHH
Confidence 699999999999998754444467777 9999999999999853321 2234444 99999999999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhH-hHHHhHhcCCCCCcccchHHHHHHHHHh
Q 039821 85 GRAMAYR-KKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTI-RSCFLYCCLYPEDYDILKWDLIDCWIGE 162 (555)
Q Consensus 85 ~~~L~~~-~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~s~Fp~~~~i~~~~li~~w~ae 162 (555)
|+.|+.+ .+.++|+.. ....+..++.+||+.|++ +. |.||+|||+||+++.|+++.++.+|+++
T Consensus 334 Gs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 334 AESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp HHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred HHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCC
Confidence 9999986 367888752 124799999999999999 77 9999999999999999999999999888
Q ss_pred CCCCCCcccChHHhHHHHHHHHHHhcccccc-CCCeEEechhhHHHH
Q 039821 163 GFLGESDRFGAENQGYDILDTLVRACLLEEV-EDDKVKMHDVIRDMA 208 (555)
Q Consensus 163 g~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~-~~~~~~mhdl~~~~~ 208 (555)
| ++.+..++++|+++||++.. ....|+|||++++++
T Consensus 400 G----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 400 I----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp C----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred C----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 7 23577899999999999875 457899999998865
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.3e-21 Score=204.57 Aligned_cols=267 Identities=19% Similarity=0.246 Sum_probs=160.0
Q ss_pred CccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH-hhhh
Q 039821 238 GWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM-SELG 314 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~-~~l~ 314 (555)
.+.+++.|++.++.+..++ .+..+++|++|+++++. +..+++..|..+++|++|++++| . +..+|..+ +.+.
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~---l~~l~~~~~~~l~ 147 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-D---LSSLPRGIFHNTP 147 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C---CCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-C---CCCCCHHHhccCC
Confidence 3456777777777666654 34667777777777544 55666666677777777777777 4 55666553 5665
Q ss_pred ccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccccccccccc---
Q 039821 315 SSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAK--- 390 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~--- 390 (555)
+|++|++++|.+..++. .++.+++|++|++++| .+..+|.+.+.+|..|.++......++..++|+.|+++++.
T Consensus 148 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 148 -KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp -TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred -CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 77777777777766654 4667777777777777 45555543334444334444444455555666666666553
Q ss_pred -------ccceeeecccccccccccccccccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhhhccCcccccc
Q 039821 391 -------ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVP 462 (555)
Q Consensus 391 -------~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 462 (555)
.++.+.++.+..... ..+..+++|+.|++++|.....+ ..++.+++|+.|+|++|.. ..+
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l---------- 293 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VAL---------- 293 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEE----------
T ss_pred cccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCC----------
Confidence 133333333322221 22335566666666665322222 2455666666666666532 222
Q ss_pred cccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 463 EMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 463 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
+.....+++|+.|+++++ .+..+|.....+++|+.|++++| ++..+|.. .++ |+.++++++
T Consensus 294 --~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~L~~L~l~~N 355 (597)
T 3oja_B 294 --NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLS--THHTLKNLTLSHN 355 (597)
T ss_dssp --ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC--TTCCCSEEECCSS
T ss_pred --CcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcChh--hcCCCCEEEeeCC
Confidence 224456788888888885 56677766677888888888886 46666632 233 888888764
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.9e-20 Score=186.01 Aligned_cols=265 Identities=15% Similarity=0.191 Sum_probs=184.7
Q ss_pred CccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhh
Q 039821 235 DVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELG 314 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~ 314 (555)
....+.++++|++.++.+..++....+++|++|+++++ .+..++. +..+++|++|++++| . +..+| .+..+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~---i~~~~-~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-K---ITDIS-ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-C---CCCCG-GGTTCT
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC-c---ccCch-HHcCCC
Confidence 33456789999999999999988899999999999976 4677766 889999999999999 5 66664 688887
Q ss_pred ccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCcc-----ccCCCcccccccccc
Q 039821 315 SSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDAT-----AFADLNHLNELWIDR 388 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~~-----~l~~l~~L~~L~l~~ 388 (555)
+|++|++++|.+..+|. +..+++|++|++++|..+..++. +..+.+| .|...++. .+..+++|++|++++
T Consensus 111 -~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 111 -NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp -TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred -cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence 99999999999999987 88999999999999977777776 7888887 44443322 366788899998877
Q ss_pred cc-----------ccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCc
Q 039821 389 AK-----------ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGK 457 (555)
Q Consensus 389 ~~-----------~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (555)
+. .++.+....+.....+. ...+++|+.|++++| .++..+.+..+++|++|++++|.. ..+
T Consensus 187 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~----- 258 (347)
T 4fmz_A 187 NQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQI-SDI----- 258 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-----
T ss_pred CcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCcc-CCC-----
Confidence 63 22223333322222222 335666666666666 344444466666777777766632 111
Q ss_pred ccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 458 FAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 458 ~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
..+..+++|+.|++++| .+..++ ....+++|+.|++++|+--...|.....++ |+.+++++|
T Consensus 259 --------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 259 --------NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp --------GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred --------hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 13556777788888775 555554 245677788888877743323333333344 777777765
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=191.56 Aligned_cols=274 Identities=23% Similarity=0.263 Sum_probs=156.3
Q ss_pred EEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+.+.+..+..+|.. -..+++.|++.++.+..++ .+..+++|++|+++++ .+..+.+..|.++++|++|++++| .
T Consensus 16 v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~- 91 (477)
T 2id5_A 16 VLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-R- 91 (477)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C-
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-c-
Confidence 33444444444432 1245666666666665543 2355666666666644 244444444566666666666665 3
Q ss_pred ccccccChh-HhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--cc--
Q 039821 301 WSNFQLPVG-MSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT-- 373 (555)
Q Consensus 301 ~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~-- 373 (555)
+..+|.. +..+. +|++|++++|.+..++. .+..+++|++|++++| .+..+++..++.+.+| .|.+.. +.
T Consensus 92 --l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 92 --LKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp --CCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred --CCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc
Confidence 4445443 34454 66666666665555432 4555555555555555 3333333224444444 222211 11
Q ss_pred ---------------------------ccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCC
Q 039821 374 ---------------------------AFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKL 426 (555)
Q Consensus 374 ---------------------------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 426 (555)
.+..+++|+.|+++++..+..++.. .....+|+.|++++| .+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~L~~L~l~~n-~l 236 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----------CLYGLNLTSLSITHC-NL 236 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT----------TTTTCCCSEEEEESS-CC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc----------cccCccccEEECcCC-cc
Confidence 2334444444444444433333222 224558888888888 45
Q ss_pred Cccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc-cccccCCCCcceEEE
Q 039821 427 KDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI-YWKPLPFTHLKEMVV 503 (555)
Q Consensus 427 ~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~~~~L~~L~l 503 (555)
+.++ .+..+++|++|++++|... .++. ..+..+++|+.|+++++ .+..+ +.....+++|+.|++
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPIS-TIEG-----------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCC-EECT-----------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEEC
T ss_pred cccCHHHhcCccccCeeECCCCcCC-ccCh-----------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEEC
Confidence 5555 5778899999999888533 2222 25678899999999986 55554 445667899999999
Q ss_pred cCCCCCCccCCCC-Cccc-ccceEEech
Q 039821 504 RGCDQLEKLPLDS-NSAK-ERKFVIRGE 529 (555)
Q Consensus 504 ~~C~~L~~lp~~~-~~~~-L~~l~i~~~ 529 (555)
+++ +++.+|... ..+. |+.+++.++
T Consensus 304 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 304 SGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 997 788887643 3444 888888754
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.6e-21 Score=186.81 Aligned_cols=218 Identities=23% Similarity=0.274 Sum_probs=181.3
Q ss_pred cceeEeeccccccccccC-CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcccc
Q 039821 240 ENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLE 318 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~ 318 (555)
.+++.|++.++.+..++. ...+++|++|+++++. +..+|.. +..+++|++|++++| . +..+|..++.+. +|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~-~~~l~~L~~L~Ls~n-~---l~~lp~~l~~l~-~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDT-MQQFAGLETLTLARN-P---LRALPASIASLN-RLR 153 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSC-GGGGTTCSEEEEESC-C---CCCCCGGGGGCT-TCC
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHH-HhccCCCCEEECCCC-c---cccCcHHHhcCc-CCC
Confidence 478999999999888776 4679999999999665 5577765 788999999999999 5 668999999998 999
Q ss_pred EEEcCCC-CCcccchhhhC---------CCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccccccccc
Q 039821 319 LLDISHT-SIRELPEELKK---------LVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDR 388 (555)
Q Consensus 319 ~L~l~~~-~i~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~ 388 (555)
+|++++| .+..+|..++. +++|++|++++| .+..+|.. ++.+++|++|++++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-----------------l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-----------------IANLQNLKSLKIRN 215 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-----------------GGGCTTCCEEEEES
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-----------------hcCCCCCCEEEccC
Confidence 9999997 55678877654 999999999999 67788874 56778889998888
Q ss_pred ccccceeeecccccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccCC
Q 039821 389 AKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGH 467 (555)
Q Consensus 389 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~ 467 (555)
+. +..++.. +..+++|+.|++++|.....++ .++.+++|++|++++|...+.++. .
T Consensus 216 N~-l~~l~~~----------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~------------~ 272 (328)
T 4fcg_A 216 SP-LSALGPA----------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL------------D 272 (328)
T ss_dssp SC-CCCCCGG----------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT------------T
T ss_pred CC-CCcCchh----------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch------------h
Confidence 73 3333322 3378999999999997777665 688999999999999987776655 6
Q ss_pred CCCCcccceeecCcccccccccccccCCCCcceEEEcC
Q 039821 468 ISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRG 505 (555)
Q Consensus 468 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~ 505 (555)
++.+++|+.|++++|+.+..+|.....+++|+.+.+..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 78899999999999999999999999999999998764
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.4e-19 Score=197.81 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=181.5
Q ss_pred ccCccceeEeecccccccc------------------ccCC-C--CCCcceEEEcccCcchhccchhHhccCCcccEEEe
Q 039821 236 VKGWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKM 294 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 294 (555)
...+.+++.|+++++.+.. +|.. . .+++|++|++++|.....+|.. +..+++|++|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 4556789999999988876 5554 4 7899999999977656666644 888999999999
Q ss_pred cCCCCCcccc-ccChhHhhhh------ccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 295 SNCGKSWSNF-QLPVGMSELG------SSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 295 ~~~~~~~~~~-~lp~~~~~l~------~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
++|..- .. .+|..++.+. ++|++|++++|.+..+|. .++.+++|++|++++| .+..+| . ++.+.+|
T Consensus 523 s~N~~l--sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGI--SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKL 597 (876)
T ss_dssp TTCTTS--CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEE
T ss_pred cCCCCc--ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcc
Confidence 988520 22 5788777663 489999999999999998 8999999999999998 466888 3 7777777
Q ss_pred -cccccC--cc----ccCCCcc-ccccccccccc--------------cceeeeccccccccccc----cc--ccccccE
Q 039821 366 -TTSVID--AT----AFADLNH-LNELWIDRAKE--------------LELLKIDYTEIVRKRRE----PF--VFRSLHC 417 (555)
Q Consensus 366 -~L~~~~--~~----~l~~l~~-L~~L~l~~~~~--------------l~~l~~~~~~~~~~~~~----~~--~~~~L~~ 417 (555)
.|.+.. +. .+..+++ |+.|+++++.- |+.+.++.+...+..+. .. ..++|+.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 443332 22 4566777 88888887631 33333333333221111 11 3347888
Q ss_pred EEEeecCCCCccc-cc-ccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccccccc--
Q 039821 418 VTIHICQKLKDTT-FL-VFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPL-- 493 (555)
Q Consensus 418 L~l~~~~~l~~~~-~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-- 493 (555)
|++++|. ++.+| .+ ..+++|+.|++++|.. ..++... +.. ......++++|+.|++++| ++..+|....
T Consensus 678 L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~-~~~---~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~ 750 (876)
T 4ecn_A 678 VTLSYNE-IQKFPTELFATGSPISTIILSNNLM-TSIPENS-LKP---KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRAT 750 (876)
T ss_dssp EECCSSC-CCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTS-SSC---TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTT
T ss_pred EEccCCc-CCccCHHHHccCCCCCEEECCCCcC-CccChHH-hcc---ccccccccCCccEEECCCC-CCccchHHhhhc
Confidence 8888874 44444 33 4678888888888743 3333310 000 0001223447777777765 5556665554
Q ss_pred CCCCcceEEEcCCCCCCccCCCCCccc-ccceEEec
Q 039821 494 PFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRG 528 (555)
Q Consensus 494 ~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~ 528 (555)
.+++|+.|++++| +++.+|.....++ |+.+++++
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCC
T ss_pred cCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCC
Confidence 6677777777665 4555666555555 66666654
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.4e-20 Score=181.08 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=173.1
Q ss_pred cceeEeecccccccc---cc-CCCCCCcceEEEccc-CcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhh
Q 039821 240 ENVRRLSLMQNQIET---LS-EVPTCPHLLTLFLDF-NEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELG 314 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~ 314 (555)
.+++.|++.++.+.. ++ .+..+++|++|++++ +.....+|.. +..+++|++|++++|.. ...+|..+..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV---SGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECC---EEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCee---CCcCCHHHhCCC
Confidence 579999999988763 33 458899999999995 4433345544 88999999999999943 347888899998
Q ss_pred ccccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCc-ccccccccccccc
Q 039821 315 SSLELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLN-HLNELWIDRAKEL 392 (555)
Q Consensus 315 ~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~-~L~~L~l~~~~~l 392 (555)
+|++|++++|.+. .+|..++.+++|++|++++|.....+|.. ++.++ +|+.|+++++.--
T Consensus 126 -~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-----------------l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-----------------YGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-----------------GGCCCTTCCEEECCSSEEE
T ss_pred -CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-----------------HhhhhhcCcEEECcCCeee
Confidence 9999999999998 68889999999999999999544477764 45555 7778877776332
Q ss_pred ceeeecccccccccccccccccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCC
Q 039821 393 ELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPF 471 (555)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 471 (555)
...+... ..++ |+.|++++|.....+ ..+..+++|+.|++++|......+ .+..+
T Consensus 188 ~~~~~~~----------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~l 243 (313)
T 1ogq_A 188 GKIPPTF----------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------KVGLS 243 (313)
T ss_dssp EECCGGG----------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------------GCCCC
T ss_pred ccCChHH----------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-------------ccccc
Confidence 2222222 1344 888888887433233 356778888888888875432221 24567
Q ss_pred cccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEechh
Q 039821 472 ENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGEE 530 (555)
Q Consensus 472 ~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~~ 530 (555)
++|++|+++++.--..+|.....+++|+.|++++++--..+|.. ..+. |+.+++.+++
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888888886433366766777888888888887544467765 3334 7777777654
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4.2e-19 Score=190.09 Aligned_cols=134 Identities=25% Similarity=0.279 Sum_probs=90.1
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+.+.+.++..+|.. -..+++.|+++++.+..++. +.++++|++|+++++. +..+++..|.++++|++|++++| .
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n-~- 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-P- 91 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-C-
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCC-c-
Confidence 44555556666542 23677888888877776654 4677788888887553 66666656777788888888777 4
Q ss_pred cccccc-ChhHhhhhccccEEEcCCCCCcccc-hhhhCCCCCcEEccCCCcccc--ccchHHHhccccc
Q 039821 301 WSNFQL-PVGMSELGSSLELLDISHTSIRELP-EELKKLVNLKCLNLRRTELLN--KIPRQLISNSSRD 365 (555)
Q Consensus 301 ~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L 365 (555)
+..+ |..++.+. +|++|++++|.+..+| ..++.+++|++|++++|. +. .+|.. ++++.+|
T Consensus 92 --l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L 155 (606)
T 3vq2_A 92 --IQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNL 155 (606)
T ss_dssp --CCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTC
T ss_pred --ccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCC
Confidence 4444 66677776 7777777777777766 367777777777777773 33 35554 6666666
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=5.7e-19 Score=182.52 Aligned_cols=93 Identities=17% Similarity=0.352 Sum_probs=46.7
Q ss_pred CCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh
Q 039821 229 GLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV 308 (555)
Q Consensus 229 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~ 308 (555)
....++......+++.|+++++.+..++....+++|++|++.++. +..+++ +..+++|++|++++| . +..+|.
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n-~---l~~~~~ 129 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNN-Q---ITDIDP 129 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-C---CCCCGG
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCC-C---CCCChH
Confidence 334444444455566666665555555445555555555555432 333333 455555555555555 3 333432
Q ss_pred hHhhhhccccEEEcCCCCCccc
Q 039821 309 GMSELGSSLELLDISHTSIREL 330 (555)
Q Consensus 309 ~~~~l~~~L~~L~l~~~~i~~l 330 (555)
+..+. +|++|++++|.+..+
T Consensus 130 -~~~l~-~L~~L~l~~n~l~~~ 149 (466)
T 1o6v_A 130 -LKNLT-NLNRLELSSNTISDI 149 (466)
T ss_dssp -GTTCT-TCSEEEEEEEEECCC
T ss_pred -HcCCC-CCCEEECCCCccCCC
Confidence 44444 555555555544443
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=4.4e-19 Score=183.39 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=183.2
Q ss_pred CccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 238 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
.+.+++.|.+.++.+..++....+++|++|+++++. +..+++ +..+++|++|++++| . +..+++ +..+. +|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n-~---l~~~~~-~~~l~-~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNN-Q---IADITP-LANLT-NL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-C---CCCCGG-GTTCT-TC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCC-c---cccChh-hcCCC-CC
Confidence 346899999999999988888899999999999765 777766 889999999999999 5 667766 88888 99
Q ss_pred cEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-ccccc----CccccCCCccccccccccc---
Q 039821 318 ELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVI----DATAFADLNHLNELWIDRA--- 389 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~----~~~~l~~l~~L~~L~l~~~--- 389 (555)
++|++++|.+..+|. +..+++|++|++++| .+..+|. ++.+.+| .|... ....+.++++|+.|+++++
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence 999999999999987 899999999999999 5777775 7777777 43321 1224667777777777654
Q ss_pred --------cccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccccc
Q 039821 390 --------KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEV 461 (555)
Q Consensus 390 --------~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 461 (555)
..++.+.++.+.....+. ...+++|+.|++++| .++.++.+..+++|++|++++|.... .++...+..+
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~l~~L 267 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKL 267 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTC
T ss_pred CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCcccc-chhhhcCCCC
Confidence 234444444433333222 235667777777766 45555566666777777777664322 1111111111
Q ss_pred ----------ccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 462 ----------PEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 462 ----------~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
.... .+..+++|+.|+++++ .+..++. ...+++|+.|++++| ++..++. ...++ |+.+++++|
T Consensus 268 ~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 268 TELKLGANQISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp SEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred CEEECCCCccCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC
Confidence 1111 1445667777777764 4554443 456778888888777 4555444 23333 777777765
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=183.37 Aligned_cols=267 Identities=17% Similarity=0.191 Sum_probs=171.3
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~ 321 (555)
+.+...+..+..+|.. -.+++++|+++++. +..+++..|..+++|++|++++| . +..+ |..+..+. +|++|+
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~---i~~~~~~~~~~l~-~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-I---VSAVEPGAFNNLF-NLRTLG 86 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-C---CCEECTTTTTTCT-TCCEEE
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCC-c---cCEeChhhhhCCc-cCCEEE
Confidence 3455666666666542 24689999999664 77777777999999999999999 5 5555 77888998 999999
Q ss_pred cCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccc-cccccC-------ccccCCCcccccccccccccc
Q 039821 322 ISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID-------ATAFADLNHLNELWIDRAKEL 392 (555)
Q Consensus 322 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~-------~~~l~~l~~L~~L~l~~~~~l 392 (555)
+++|.+..+|.. +..+++|++|++++| .+..+++..+..+.+| .|.+.. ...|..+++|++|+++++. +
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l 164 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-L 164 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-C
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-C
Confidence 999999999974 789999999999999 4666655557888877 444332 2257788999999988762 2
Q ss_pred ceeeecccccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcc-----------cc
Q 039821 393 ELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKF-----------AE 460 (555)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----------~~ 460 (555)
+.++... ...+++|+.|++.+|......+ .+..+++|++|++++|..++.++..... ..
T Consensus 165 ~~~~~~~---------l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 165 TSIPTEA---------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp SSCCHHH---------HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred cccChhH---------hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 2222111 1134555555555542211111 3444555555555554433333221000 00
Q ss_pred ccccc-CCCCCCcccceeecCcccccccccc-cccCCCCcceEEEcCCCCCCcc-CCCCCccc-ccceEEech
Q 039821 461 VPEMM-GHISPFENLRLLRLSHLPNLKSIYW-KPLPFTHLKEMVVRGCDQLEKL-PLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 461 l~~~~-~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~~~~L~~L~l~~C~~L~~l-p~~~~~~~-L~~l~i~~~ 529 (555)
+...+ ..+..+++|+.|+++++ .+..++. ....+++|+.|+++++ +++.+ |.....+. |+.++++++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred ccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence 11111 13456788888888885 4555543 3556788888888886 45554 44444445 888888765
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.6e-19 Score=181.82 Aligned_cols=110 Identities=27% Similarity=0.370 Sum_probs=48.7
Q ss_pred ceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-Hhhhhccc
Q 039821 241 NVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSL 317 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L 317 (555)
+++.|++.++.+..+. .+..+++|+.|+++++ .+..+++..|.++++|++|++++| . +..+|.. +..+. +|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L 149 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-W---LTVIPSGAFEYLS-KL 149 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-C---CSBCCTTTSSSCT-TC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-c---CCccChhhhcccC-CC
Confidence 4455555544444432 1244444555555433 233444333444445555555444 2 3333332 33343 45
Q ss_pred cEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccch
Q 039821 318 ELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
++|++++|.+..+|. .+..+++|++|++++|..+..+|.
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 555555554444443 344444455555544444444443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=3.6e-19 Score=190.91 Aligned_cols=277 Identities=14% Similarity=0.153 Sum_probs=179.3
Q ss_pred ccCccceeEeecccccccc------------------ccCC-C--CCCcceEEEcccCcchhccchhHhccCCcccEEEe
Q 039821 236 VKGWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKM 294 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 294 (555)
.....+++.|++.++.+.. +|.. . ++++|++|++++|.....+|.. +.++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 4456789999999988877 6554 5 7999999999977756666654 888999999999
Q ss_pred cCCC-CCcccc-ccChhHhhh------hccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCccccccchHHHhcccc
Q 039821 295 SNCG-KSWSNF-QLPVGMSEL------GSSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTELLNKIPRQLISNSSR 364 (555)
Q Consensus 295 ~~~~-~~~~~~-~lp~~~~~l------~~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~ 364 (555)
++|. . .. .+|..++.+ . +|++|++++|.+..+|. .++.+++|++|++++|.....+| . ++.+.+
T Consensus 281 s~n~~l---~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 281 ACNRGI---SGEQLKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp TTCTTS---CHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred cCCCCC---ccccchHHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 9995 3 33 688889887 6 99999999999999998 89999999999999995333888 3 777777
Q ss_pred c-cccccC--cc----ccCCCcc-cccccccccc--------------ccceeeeccccccc-cccccc-------cccc
Q 039821 365 D-TTSVID--AT----AFADLNH-LNELWIDRAK--------------ELELLKIDYTEIVR-KRREPF-------VFRS 414 (555)
Q Consensus 365 L-~L~~~~--~~----~l~~l~~-L~~L~l~~~~--------------~l~~l~~~~~~~~~-~~~~~~-------~~~~ 414 (555)
| .|.+.. +. .+..+++ |++|+++++. .++.+.++.+...+ .+..+. .+++
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7 444433 22 4566777 8888887663 23333333333222 112222 4557
Q ss_pred ccEEEEeecCCCCccc-c-cccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccc
Q 039821 415 LHCVTIHICQKLKDTT-F-LVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKP 492 (555)
Q Consensus 415 L~~L~l~~~~~l~~~~-~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 492 (555)
|+.|++++|. ++.++ . +..+++|++|++++|... .++... +.. ....+..+++|+.|+++++ .+..+|...
T Consensus 435 L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~~---~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 507 (636)
T 4eco_A 435 VSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS-LKD---ENENFKNTYLLTSIDLRFN-KLTKLSDDF 507 (636)
T ss_dssp EEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS-SEE---TTEECTTGGGCCEEECCSS-CCCBCCGGG
T ss_pred CCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH-hcc---ccccccccCCccEEECcCC-cCCccChhh
Confidence 8888888874 34444 2 445788888888887543 333210 000 0000122336666666653 444555544
Q ss_pred c--CCCCcceEEEcCCCCCCccCCCCCccc-ccceEEe
Q 039821 493 L--PFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIR 527 (555)
Q Consensus 493 ~--~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~ 527 (555)
. .+++|+.|+++++ +++.+|.....++ |+.++++
T Consensus 508 ~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 508 RATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp STTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECC
T ss_pred hhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECC
Confidence 4 5566666666664 3444555554444 5666553
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=9.2e-19 Score=185.13 Aligned_cols=154 Identities=19% Similarity=0.291 Sum_probs=112.7
Q ss_pred cCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccc
Q 039821 226 AGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSN 303 (555)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 303 (555)
.+..+..+|... ..++++|+++++.+..+. .+..+++|++|+++++. +..+++..|..+++|++|++++| . +
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~---l 86 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-H---L 86 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-C---C
T ss_pred CCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-c---c
Confidence 344566666532 368999999999887764 35889999999999664 66777677889999999999999 5 6
Q ss_pred cccChh-HhhhhccccEEEcCCCCCccc--chhhhCCCCCcEEccCCCccccccchHHHhccccc-ccccc--Cc-----
Q 039821 304 FQLPVG-MSELGSSLELLDISHTSIREL--PEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVI--DA----- 372 (555)
Q Consensus 304 ~~lp~~-~~~l~~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~--~~----- 372 (555)
..+|+. ++.+. +|++|++++|.+..+ |..++.+++|++|++++|..+..+|...++.+.+| .|++. ..
T Consensus 87 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 666655 88887 999999999988854 56788999999999999865777775557777777 44332 21
Q ss_pred cccCCCcccccccc
Q 039821 373 TAFADLNHLNELWI 386 (555)
Q Consensus 373 ~~l~~l~~L~~L~l 386 (555)
..++.+++|++|++
T Consensus 166 ~~l~~l~~L~~L~l 179 (549)
T 2z81_A 166 QSLKSIRDIHHLTL 179 (549)
T ss_dssp TTTTTCSEEEEEEE
T ss_pred hhhhccccCceEec
Confidence 23444555555544
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=9.4e-19 Score=187.34 Aligned_cols=297 Identities=19% Similarity=0.177 Sum_probs=165.4
Q ss_pred EEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
.+.+.+.++..+|... ..+++.|+++++.+..++ .+.++++|++|+++++. +..+.+..|.++++|++|++++|..
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcc
Confidence 3445555566665422 346788888888777764 34777888888888554 5556555577788888888887732
Q ss_pred CccccccChhHhhhhccccEEEcCCCCCccc-chhhhCCCCCcEEccCCCcccccc--chHHHhccccc-ccccc--Ccc
Q 039821 300 SWSNFQLPVGMSELGSSLELLDISHTSIREL-PEELKKLVNLKCLNLRRTELLNKI--PRQLISNSSRD-TTSVI--DAT 373 (555)
Q Consensus 300 ~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L-~L~~~--~~~ 373 (555)
....|..++.+. +|++|++++|.+..+ |..++.+++|++|++++| .+..+ |. +..+.+| .|++. .+.
T Consensus 94 ---~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 94 ---IFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp ---SEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCCC
T ss_pred ---cccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCccc
Confidence 223355666776 777777777777776 345677777777777777 34443 32 3334444 22222 111
Q ss_pred -----ccCCCcccc--cccccccc--------------------------------------------------------
Q 039821 374 -----AFADLNHLN--ELWIDRAK-------------------------------------------------------- 390 (555)
Q Consensus 374 -----~l~~l~~L~--~L~l~~~~-------------------------------------------------------- 390 (555)
.++.+++|+ .|+++++.
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 234445554 34333321
Q ss_pred --------ccceeeeccccccccccc-ccccccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhhhc-cCccc
Q 039821 391 --------ELELLKIDYTEIVRKRRE-PFVFRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEIIS-VGKFA 459 (555)
Q Consensus 391 --------~l~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 459 (555)
.++.+.+..+.....+.. ...+++|+.|++++|. ++.+ ..+..+++|++|++++|...+..+. ...+.
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 111222222222222221 3356777777777773 3333 3566777777777777753332221 00011
Q ss_pred ccc-----------cc-cCCCCCCcccceeecCcccccccc---cccccCCCCcceEEEcCCCCCCccCCCCCccc-ccc
Q 039821 460 EVP-----------EM-MGHISPFENLRLLRLSHLPNLKSI---YWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERK 523 (555)
Q Consensus 460 ~l~-----------~~-~~~~~~~~~L~~L~l~~~~~L~~l---~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~ 523 (555)
.+. .. ...++.+++|++|+++++ .+..+ +.....+++|+.|++++|.--...|.....++ |+.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 100 11 123566777777777775 34433 34456678888888887643333344444445 777
Q ss_pred eEEech
Q 039821 524 FVIRGE 529 (555)
Q Consensus 524 l~i~~~ 529 (555)
++++++
T Consensus 405 L~l~~n 410 (606)
T 3t6q_A 405 LDLAFT 410 (606)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 777654
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=182.94 Aligned_cols=119 Identities=23% Similarity=0.334 Sum_probs=96.4
Q ss_pred EEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
.+...+..+..+|.... .++++|+++++.+..++ .+..+++|++|+++++. +..+++..|.++++|++|++++| .
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-c
Confidence 44555556666665333 78999999999988765 35889999999999665 77776667899999999999999 6
Q ss_pred CccccccChhHhhhhccccEEEcCCCCCcc--cchhhhCCCCCcEEccCCCc
Q 039821 300 SWSNFQLPVGMSELGSSLELLDISHTSIRE--LPEELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 300 ~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~ 349 (555)
+..+|.. .+. +|++|++++|.+.. +|..++.+++|++|++++|.
T Consensus 81 ---l~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 81 ---LVKISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ---CCEEECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ---eeecCcc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 7788877 676 99999999999986 56789999999999999884
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=5.2e-19 Score=178.53 Aligned_cols=247 Identities=16% Similarity=0.205 Sum_probs=188.1
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEcCCCCCcccch-hhhC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISHTSIRELPE-ELKK 336 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp~-~i~~ 336 (555)
..+.+++.|++.++ .+..+|...+..+++|++|++++| . +..++. .+..+. +|++|++++|.+..+|. .++.
T Consensus 42 ~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~---i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-Q---IEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-C---CCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-c---ccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcC
Confidence 45689999999955 588899988999999999999999 5 666654 788887 99999999999999876 5899
Q ss_pred CCCCcEEccCCCccccccchHHHhccccc-cccccC--c-----cccCCCcccccccccccc----------ccceeeec
Q 039821 337 LVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--A-----TAFADLNHLNELWIDRAK----------ELELLKID 398 (555)
Q Consensus 337 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~-----~~l~~l~~L~~L~l~~~~----------~l~~l~~~ 398 (555)
+++|++|++++| .+..+|..+++.+.+| +|++.+ + ..++.+++|++|+++++. .++.+.++
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecc
Confidence 999999999999 6889998766778777 444332 2 246778899999887753 12222222
Q ss_pred -------------------ccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccc
Q 039821 399 -------------------YTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFA 459 (555)
Q Consensus 399 -------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 459 (555)
.+.....+.. .+++|+.|++++| .++.++++..+++|++|++++|...+..+.
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----- 266 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYH----- 266 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEESG-----
T ss_pred cccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCcCCCcChh-----
Confidence 1111111111 3467888888887 566677888999999999999854433222
Q ss_pred ccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 460 EVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 460 ~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
.+..+++|+.|+++++ .++.++.....+++|+.|++++| +++.+|.....++ |+.+++++|
T Consensus 267 -------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 267 -------PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp -------GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred -------HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 5678899999999995 78888877778999999999998 7888887665555 899998876
No 24
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=188.77 Aligned_cols=182 Identities=21% Similarity=0.272 Sum_probs=146.2
Q ss_pred CCcEEEEEeCchhhhcccCCcceEEc---CCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVCGSMESHRKFEV---ACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRA 87 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 87 (555)
+||+||||||++.++..+. ...+++ ++|+.+||++||...++... ....+.+.+|+++|+|+||||+.+|.+
T Consensus 256 ~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 256 SQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp SSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 6899999999999887654 345555 58999999999999987532 122346899999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHhhhhhhc-----cCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHHHHHHh
Q 039821 88 MAYRKKAEQWRRAIEELRRSASEF-----AGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLIDCWIGE 162 (555)
Q Consensus 88 L~~~~~~~~w~~~l~~l~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~~w~ae 162 (555)
++.+. ..|..+++.+....... ......+..++..||+.|++ +.|.||.++|+||+++.|+...+...|.++
T Consensus 331 l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 331 LRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 98743 46998888887643211 11123688999999999999 899999999999999999999999999533
Q ss_pred CCCCCCcccChHHhHHHHHHHHHHhcccccc---CCCeEEechhhHHHHHHH
Q 039821 163 GFLGESDRFGAENQGYDILDTLVRACLLEEV---EDDKVKMHDVIRDMALWI 211 (555)
Q Consensus 163 g~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~---~~~~~~mhdl~~~~~~~~ 211 (555)
.+.+..++++|++++++... ....|+||++++++++..
T Consensus 408 -----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 408 -----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp -----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 23467889999999999754 234799999999999876
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=178.96 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=51.0
Q ss_pred cceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhcc
Q 039821 240 ENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSS 316 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~ 316 (555)
.+++.|++.++.+..++ .+..+++|++|+++++. +..++...|.++++|++|++++| . +..+|. .+..+. +
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-R---LTTIPNGAFVYLS-K 137 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-C---CSSCCTTTSCSCS-S
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-c---CCeeCHhHhhccc-c
Confidence 34455555555444432 22444555555555332 34444444445555555555554 3 334433 233443 5
Q ss_pred ccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccch
Q 039821 317 LELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
|++|++++|.+..+|. .+..+++|++|++++|..+..+|.
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 5555555555554443 344455555555554444444443
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=3.5e-19 Score=195.41 Aligned_cols=278 Identities=19% Similarity=0.189 Sum_probs=130.1
Q ss_pred CccCccceeEeecccccccc--ccCCCCCCcceEEEcccCcchh----------------------ccchhHhccCCccc
Q 039821 235 DVKGWENVRRLSLMQNQIET--LSEVPTCPHLLTLFLDFNEDVE----------------------MIADGFFQFMPSLK 290 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~l~~L~ 290 (555)
......+++.|++.++.+.. ...+..+++|++|++++|.... .+|......+++|+
T Consensus 218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence 34555667777777766543 1223555666666665443222 22322112224444
Q ss_pred EEEecCCCCCccccccChhHhhhhccccEEEcCCCCCc-ccchh-hhCCCCCcEEccCCCccccccchHHHhccc-cc-c
Q 039821 291 VLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIR-ELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSS-RD-T 366 (555)
Q Consensus 291 ~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~-~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~-~L-~ 366 (555)
+|++++|.. ...+|..++.+. +|++|++++|.+. .+|.. ++.+++|++|++++|.....+|.. +..+. +| .
T Consensus 298 ~L~Ls~n~l---~~~~p~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~ 372 (768)
T 3rgz_A 298 GLDLSGNHF---YGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLT 372 (768)
T ss_dssp EEECCSSEE---EECCCGGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSE
T ss_pred EEECcCCcC---CCccchHHhcCC-CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcE
Confidence 444444422 223444444444 5555555555444 44443 445555555555555322244443 33332 23 2
Q ss_pred ccccCc-------cccCC--Ccccccccccccc-------------ccceeeecccccc-cccccccccccccEEEEeec
Q 039821 367 TSVIDA-------TAFAD--LNHLNELWIDRAK-------------ELELLKIDYTEIV-RKRREPFVFRSLHCVTIHIC 423 (555)
Q Consensus 367 L~~~~~-------~~l~~--l~~L~~L~l~~~~-------------~l~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 423 (555)
|++... ..+.. +++|++|++++|. .++.+.++.+... ..+.....+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 221111 01111 3445555444332 1222222222221 11222233444444444444
Q ss_pred CCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEE
Q 039821 424 QKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMV 502 (555)
Q Consensus 424 ~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~ 502 (555)
.....+| .++.+++|++|++++|...+.++ ..++.+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIP------------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC------------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCC------------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 3222222 34444455555554443322222 2455667777777777654446666666677777777
Q ss_pred EcCCCCCCccCCCCCccc-ccceEEech
Q 039821 503 VRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 503 l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
+++|.-...+|.....++ |+.+++++|
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 777765556776666555 777777654
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=6.3e-19 Score=187.29 Aligned_cols=111 Identities=28% Similarity=0.396 Sum_probs=59.6
Q ss_pred CccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhh
Q 039821 238 GWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELG 314 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~ 314 (555)
+..++++|++.++.+..++. +.++++|++|+++++. +..+++..|.++++|++|++++| . +..+|. .++.+.
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~---l~~l~~~~~~~l~ 124 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-N---LASLENFPIGHLK 124 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-C---CCCSTTCSCTTCT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc-c---cccCCCccccccc
Confidence 34455555555554444332 3455555555555333 44444444555555555555555 3 444433 355555
Q ss_pred ccccEEEcCCCCCcc--cchhhhCCCCCcEEccCCCccccccc
Q 039821 315 SSLELLDISHTSIRE--LPEELKKLVNLKCLNLRRTELLNKIP 355 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp 355 (555)
+|++|++++|.+.. +|..++++++|++|++++| .+..++
T Consensus 125 -~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~ 165 (570)
T 2z63_A 125 -TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165 (570)
T ss_dssp -TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEEC
T ss_pred -cccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceec
Confidence 66666666666654 4666666666666666666 334433
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.2e-18 Score=178.77 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=110.5
Q ss_pred cCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccc
Q 039821 226 AGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQ 305 (555)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 305 (555)
.+..+..++......++++|++.++.+..++ ...+++|++|+++++. +..++ +..+++|++|++++| . +..
T Consensus 50 s~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N-~---l~~ 120 (457)
T 3bz5_A 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTN-K---LTK 120 (457)
T ss_dssp CSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSS-C---CSC
T ss_pred cCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCC-c---CCe
Confidence 3334444455555667777777777766664 6667777777777544 44443 566777777777777 4 444
Q ss_pred cChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc---cccccCcc--ccCCCcc
Q 039821 306 LPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD---TTSVIDAT--AFADLNH 380 (555)
Q Consensus 306 lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L---~L~~~~~~--~l~~l~~ 380 (555)
+| ++.+. +|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+.+| .++...+. .++.+++
T Consensus 121 l~--~~~l~-~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~ 192 (457)
T 3bz5_A 121 LD--VSQNP-LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKL 192 (457)
T ss_dssp CC--CTTCT-TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTT
T ss_pred ec--CCCCC-cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCC
Confidence 54 56665 7777777777777664 5667777777777775555553 3444444 22222221 1344555
Q ss_pred ccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCC
Q 039821 381 LNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 381 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~ 447 (555)
|+.|+++++. ++. . ....+++|+.|++++| .++.+| ++.+++|++|++++|.
T Consensus 193 L~~L~l~~N~-l~~----------~--~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 193 LNRLNCDTNN-ITK----------L--DLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCEEECCSSC-CSC----------C--CCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred CCEEECcCCc-CCe----------e--ccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence 5555554431 111 1 1225667777777766 344444 5666777777776664
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=1.1e-18 Score=191.57 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=188.3
Q ss_pred ccceeEeecccccccc-cc-CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcc
Q 039821 239 WENVRRLSLMQNQIET-LS-EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSS 316 (555)
Q Consensus 239 ~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~ 316 (555)
..+++.|.+.++.+.. ++ .+..+++|++|++++|. +....+..+..+++|++|++++|.. ...+|..++.+. +
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~~~~l~-~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNML---EGEIPQELMYVK-T 467 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCC---CSCCCGGGGGCT-T
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcc---cCcCCHHHcCCC-C
Confidence 3467777777776653 22 34677888888888664 4433334477888888888888844 446788888887 8
Q ss_pred ccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCc-------cccCCCccccccccc
Q 039821 317 LELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDA-------TAFADLNHLNELWID 387 (555)
Q Consensus 317 L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~-------~~l~~l~~L~~L~l~ 387 (555)
|++|++++|.+. .+|..++.+++|++|++++|.....+|.. ++.+.+| .|++.+. ..++.+++|+.|+++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 888888888877 56778888888888888888544467765 7777777 4443332 256778888888888
Q ss_pred cccccceeeeccccc------------------------------------------------------------ccccc
Q 039821 388 RAKELELLKIDYTEI------------------------------------------------------------VRKRR 407 (555)
Q Consensus 388 ~~~~l~~l~~~~~~~------------------------------------------------------------~~~~~ 407 (555)
++.-...+|..+... ...+.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 764333333221110 00122
Q ss_pred cccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccc
Q 039821 408 EPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLK 486 (555)
Q Consensus 408 ~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~ 486 (555)
....+++|+.|++++|.....+| .++.+++|+.|++++|...+.+|. .++.+++|+.|+++++.--.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEE
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccC
Confidence 33456788999999885544444 788899999999999876666655 67888999999999875555
Q ss_pred cccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEechh
Q 039821 487 SIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIRGEE 530 (555)
Q Consensus 487 ~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~~~~ 530 (555)
.+|.....+++|+.|++++++--..+|......++....+.|++
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 78888888999999999998766677766554334444455543
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=174.78 Aligned_cols=263 Identities=22% Similarity=0.258 Sum_probs=175.3
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+...+..+..+|.. -..+++.|++.++.+..++. +..+++|++|+++++ .+..+++..|..+++|++|++++| .
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~- 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-Y- 111 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C-
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-c-
Confidence 33444455666542 23588999999888887765 578889999999866 466776666888899999999988 5
Q ss_pred ccccccChh-HhhhhccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCC
Q 039821 301 WSNFQLPVG-MSELGSSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFAD 377 (555)
Q Consensus 301 ~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~ 377 (555)
+..+|.. +..+. +|++|++++|.+..+|. .+..+++|++|++++|..+..+++. .+++
T Consensus 112 --l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------~~~~ 172 (353)
T 2z80_A 112 --LSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK----------------DFAG 172 (353)
T ss_dssp --CSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----------------TTTT
T ss_pred --CCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----------------HccC
Confidence 6777766 67777 99999999998888887 6788899999999888656666653 4567
Q ss_pred CccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhcc
Q 039821 378 LNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISV 455 (555)
Q Consensus 378 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~ 455 (555)
+++|++|+++++. +.... +.....+++|++|++++|. ++.++ .+..+++|++|++++|......+.
T Consensus 173 l~~L~~L~l~~n~-l~~~~---------~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~- 240 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYE---------PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFS- 240 (353)
T ss_dssp CCEEEEEEEEETT-CCEEC---------TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred CCCCCEEECCCCC-cCccC---------HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCcccccccc-
Confidence 7788888887763 32221 1122267888888888874 44443 344578888888888753321111
Q ss_pred CcccccccccCCCCCCcccceeecCccc----ccccccccccCCCCcceEEEcCCCCCCccCCCC-Cccc-ccceEEech
Q 039821 456 GKFAEVPEMMGHISPFENLRLLRLSHLP----NLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDS-NSAK-ERKFVIRGE 529 (555)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~----~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~-~~~~-L~~l~i~~~ 529 (555)
. .......+.++.++++++. .+..+|.....+++|+.|++++| +++.+|... ..++ |+.++++++
T Consensus 241 ----~----l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 241 ----E----LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp --------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----c----cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 0 0011223445555554431 23344544566788888888776 677777764 4455 777877755
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2e-18 Score=170.11 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=81.1
Q ss_pred EEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
.+.+.+..+..+|... ..+++.|++.++.+..++. +..+++|++|++.++. +..+++..+..+++|++|++++| .
T Consensus 37 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~ 113 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-H 113 (332)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-C
T ss_pred EEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-c
Confidence 3444444555555432 3577778888777766543 5777788888887554 55665555777888888888877 5
Q ss_pred CccccccChhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCc
Q 039821 300 SWSNFQLPVGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 300 ~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 349 (555)
+..+|..+. . +|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 114 ---l~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 114 ---LVEIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ---CCSCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ---CCccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 666776655 3 78888888888877766 46778888888888773
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.3e-18 Score=186.94 Aligned_cols=221 Identities=18% Similarity=0.191 Sum_probs=143.0
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+..+..+|... ..++++|+++++.+..++. +..+++|++|+++++. +..+++..+.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-
Confidence 34555566666666433 3689999999988877664 5788899999998654 66776677888999999999988
Q ss_pred CCccccccCh-hHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--cc
Q 039821 299 KSWSNFQLPV-GMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT 373 (555)
Q Consensus 299 ~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~ 373 (555)
. +..+|. .++.+. +|++|++++|.+..+|. .++.+++|++|++++| .+..++...++++.+| .|.+.. +.
T Consensus 84 ~---l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 84 E---LSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp C---CCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred c---cCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccc
Confidence 5 677776 477887 99999999998888874 6888889999999888 4555544446666666 433322 22
Q ss_pred c-------cCCCcccccccccccc----------------------------------------ccceeeecccccccc-
Q 039821 374 A-------FADLNHLNELWIDRAK----------------------------------------ELELLKIDYTEIVRK- 405 (555)
Q Consensus 374 ~-------l~~l~~L~~L~l~~~~----------------------------------------~l~~l~~~~~~~~~~- 405 (555)
. +..+++|++|+++++. .++.+.++.+.....
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 1 1234667777666542 122222222211111
Q ss_pred ccccccc--ccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcc
Q 039821 406 RREPFVF--RSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAM 449 (555)
Q Consensus 406 ~~~~~~~--~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~ 449 (555)
+.....+ ++|+.|++++|.....+ ..++.+++|++|++++|...
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 1122223 34888888777432222 25677788888888877543
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=6.2e-18 Score=187.44 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=105.9
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+..+..+|. .+.++++|+++++.+..+. .+..+++|++|+++++.....+++..|.++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 455666777888887 6689999999999887754 45889999999999886677776777899999999999998
Q ss_pred CCcccccc-ChhHhhhhccccEEEcCCCCCcc-cchh--hhCCCCCcEEccCCCcccccc-chHHHhccccc
Q 039821 299 KSWSNFQL-PVGMSELGSSLELLDISHTSIRE-LPEE--LKKLVNLKCLNLRRTELLNKI-PRQLISNSSRD 365 (555)
Q Consensus 299 ~~~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L 365 (555)
. +..+ |..++.+. +|++|++++|.+.. +|.. ++.+++|++|++++|. +..+ |...++++.+|
T Consensus 84 ~---l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 84 K---IYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSL 150 (844)
T ss_dssp C---CCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSC
T ss_pred c---CcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCC
Confidence 4 4444 77888887 99999999998876 4554 7888899999998884 4444 32337777777
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.1e-18 Score=186.88 Aligned_cols=259 Identities=17% Similarity=0.077 Sum_probs=170.5
Q ss_pred ccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhc
Q 039821 236 VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGS 315 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~ 315 (555)
.....+++.+.+.++.+..++....+++|++|++.+|. +..+|. + .+++|++|++++|.. .... .++.+.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~--~-~l~~L~~L~l~~n~~---~~~~--~~~~l~- 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPT--L-DLPFLKSLTLTMNKG---SISF--KKVALP- 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCC-CSSCCC--C-CCSSCCEEEEESCSS---CEEC--CCCCCT-
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEccccc-Cccccc--C-CCCccceeeccCCcC---ccch--hhccCC-
Confidence 44556677777777777666666677777777777554 355552 3 677777777777633 2222 344555
Q ss_pred cccEEEcCCCCCccc---chhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCc--------cccCCCccccc
Q 039821 316 SLELLDISHTSIREL---PEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDA--------TAFADLNHLNE 383 (555)
Q Consensus 316 ~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~--------~~l~~l~~L~~ 383 (555)
+|++|++++|.+..+ |..+..+++|++|++++| .+..+|.. ++.+.+| .|.+.+. ..+..+++|+.
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 777777777766655 556667777777777776 35556533 5555555 3333221 24667888888
Q ss_pred cccccccccceeeecccccccccccccccccccEEEEeecCCCC--cccccccCCCCceEEeecCCcchhhhccCccccc
Q 039821 384 LWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLK--DTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEV 461 (555)
Q Consensus 384 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 461 (555)
|++++|......+ .....+++|+.|++++|.... .+..++.+++|++|++++|...+..+.
T Consensus 429 L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------- 491 (606)
T 3vq2_A 429 LDISYTNTKIDFD----------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG------- 491 (606)
T ss_dssp EECTTSCCEECCT----------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-------
T ss_pred EECcCCCCCccch----------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-------
Confidence 8888875332221 222378899999999885433 233678889999999999854433222
Q ss_pred ccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc--ccceEEech
Q 039821 462 PEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK--ERKFVIRGE 529 (555)
Q Consensus 462 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~--L~~l~i~~~ 529 (555)
.++.+++|+.|+++++.-....|.....+++|+.|++++| +++.+|.....+. |+.+++.++
T Consensus 492 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 492 -----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp -----TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred -----hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 5778899999999987433334666777899999999987 4888888765553 888888764
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.1e-18 Score=176.29 Aligned_cols=239 Identities=19% Similarity=0.212 Sum_probs=174.3
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L~~L~ 321 (555)
+.+...+..+..+|.. -.++++.|+++++. +..+++..|..+++|++|++++| . +..++ ..+..+. +|++|+
T Consensus 57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~---i~~~~~~~~~~l~-~L~~L~ 129 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-S---IRQIEVGAFNGLA-SLNTLE 129 (452)
T ss_dssp CEEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-C---CCEECTTTTTTCT-TCCEEE
T ss_pred cEEEECCCCcCccCCC-CCCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-c---cCCcChhhccCcc-cCCEEE
Confidence 3455555555555542 23689999999664 77777777999999999999999 5 55554 6778887 999999
Q ss_pred cCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccc
Q 039821 322 ISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYT 400 (555)
Q Consensus 322 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 400 (555)
+++|.+..+|.. +..+++|++|++++| .+..+|.. .|..+++|++|+++++..++.++....
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSY----------------AFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTT----------------TTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHh----------------HHhcCCcccEEeCCCCCCccccChhhc
Confidence 999999999874 888999999999999 57788875 356778888888887777766654322
Q ss_pred ccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecC
Q 039821 401 EIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLS 480 (555)
Q Consensus 401 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 480 (555)
..+++|+.|++++| .++.++.+..+++|++|++++|...+..+. .+..+++|+.|+++
T Consensus 193 ---------~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 193 ---------EGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVM 250 (452)
T ss_dssp ---------TTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECT
T ss_pred ---------cCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeC
Confidence 25778888888877 566667777888888888888754332222 46677788888888
Q ss_pred cccccccc-cccccCCCCcceEEEcCCCCCCccCCCC-Cccc-ccceEEech
Q 039821 481 HLPNLKSI-YWKPLPFTHLKEMVVRGCDQLEKLPLDS-NSAK-ERKFVIRGE 529 (555)
Q Consensus 481 ~~~~L~~l-~~~~~~~~~L~~L~l~~C~~L~~lp~~~-~~~~-L~~l~i~~~ 529 (555)
++ .+..+ +.....+++|+.|+++++ +++.+|... ..+. |+.+++.++
T Consensus 251 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 251 NS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 75 44444 334556788888888776 677777543 3344 777777754
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=169.14 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=44.4
Q ss_pred CcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc---ChhHhhhhccccEEEcCCCCCcccchhhhCCC
Q 039821 262 PHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL---PVGMSELGSSLELLDISHTSIRELPEELKKLV 338 (555)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l---p~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~ 338 (555)
++|++|+++++. +..++..+|.++++|++|++++| . +..+ |..+..+. +|++|++++|.+..+|..+..++
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-G---LSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-C---CCEEEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEETCT
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-c---cCcccCccccccccc-ccCEEECCCCccccChhhcCCCC
Confidence 445555555332 44455444555555555555555 2 2222 34444444 55555555555555555555555
Q ss_pred CCcEEccCCCccccccc
Q 039821 339 NLKCLNLRRTELLNKIP 355 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp 355 (555)
+|++|++++| .+..++
T Consensus 102 ~L~~L~l~~n-~l~~~~ 117 (306)
T 2z66_A 102 QLEHLDFQHS-NLKQMS 117 (306)
T ss_dssp TCCEEECTTS-EEESST
T ss_pred CCCEEECCCC-cccccc
Confidence 5555555555 344443
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=174.48 Aligned_cols=239 Identities=18% Similarity=0.233 Sum_probs=175.0
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L~~L~ 321 (555)
+.+...+..+..+|.. -.++++.|+++++. +..++...|..+++|++|++++| . +..++ ..+..+. +|++|+
T Consensus 46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~---i~~i~~~~~~~l~-~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-H---IRTIEIGAFNGLA-NLNTLE 118 (440)
T ss_dssp CEEECCSCCCSSCCSC-CCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-C---CCEECGGGGTTCS-SCCEEE
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-c---CCccChhhccCCc-cCCEEE
Confidence 4555666666666543 23789999999654 77787777999999999999999 5 66655 5677887 999999
Q ss_pred cCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccc
Q 039821 322 ISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYT 400 (555)
Q Consensus 322 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 400 (555)
+++|.++.+|. .+..+++|++|++++| .+..+|.. .|..+++|++|+++++..+..++....
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~----------------~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSY----------------AFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTT----------------TTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHH----------------HhhhCcccCEeCCCCCCCcceeCcchh
Confidence 99999999987 6899999999999999 57778765 356777888888887776666554322
Q ss_pred ccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecC
Q 039821 401 EIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLS 480 (555)
Q Consensus 401 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 480 (555)
..+++|+.|++++| .++.++.+..+++|++|++++|......+ ..+..+++|+.|+++
T Consensus 182 ---------~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 182 ---------EGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRP------------GSFQGLMHLQKLWMI 239 (440)
T ss_dssp ---------TTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECT------------TTTTTCTTCCEEECT
T ss_pred ---------hcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccCh------------hhhccCccCCEEECC
Confidence 26778888888887 56677777788888888888874332222 256677888888888
Q ss_pred ccccccccc-ccccCCCCcceEEEcCCCCCCccCCCC-Cccc-ccceEEech
Q 039821 481 HLPNLKSIY-WKPLPFTHLKEMVVRGCDQLEKLPLDS-NSAK-ERKFVIRGE 529 (555)
Q Consensus 481 ~~~~L~~l~-~~~~~~~~L~~L~l~~C~~L~~lp~~~-~~~~-L~~l~i~~~ 529 (555)
++ .+..++ .....+++|+.|+++++ +++.+|... ..+. |+.+++.++
T Consensus 240 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 240 QS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 74 455543 34556788888888875 677777643 3344 777777654
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=9.4e-18 Score=177.69 Aligned_cols=120 Identities=25% Similarity=0.339 Sum_probs=99.8
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+..+..+|... ..+++.|+++++.+..++ .+..+++|++|+++++. +..+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-
Confidence 45566666677776533 378999999999998876 46899999999999664 77777777999999999999999
Q ss_pred CCccccccChhHhhhhccccEEEcCCCCCcccc--hhhhCCCCCcEEccCCCc
Q 039821 299 KSWSNFQLPVGMSELGSSLELLDISHTSIRELP--EELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 299 ~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~ 349 (555)
. +..+|.. .+. +|++|++++|.+..+| ..++.+++|++|++++|.
T Consensus 111 ~---l~~lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 111 R---LQNISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp C---CCEECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred c---CCccCcc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 6 7788877 677 9999999999999875 689999999999999983
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.9e-18 Score=188.90 Aligned_cols=268 Identities=15% Similarity=0.162 Sum_probs=155.6
Q ss_pred CccceeEeeccccccc-ccc-CCCCCCcceEEEcccCcchh--ccchhHhc-------cCCcccEEEecCCCCCcccccc
Q 039821 238 GWENVRRLSLMQNQIE-TLS-EVPTCPHLLTLFLDFNEDVE--MIADGFFQ-------FMPSLKVLKMSNCGKSWSNFQL 306 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~-~l~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~l 306 (555)
...+++.|++.++.+. .+| .+.++++|++|+++++..+. .+|.. +. .+++|++|++++| . +..+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~---L~~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-N---LEEF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-C---CCBC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-c---CCcc
Confidence 5778888888887643 344 34778888888888665233 24443 33 3447888888887 4 5577
Q ss_pred Ch--hHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhcccc-c-cccc--cCcccc----C
Q 039821 307 PV--GMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSR-D-TTSV--IDATAF----A 376 (555)
Q Consensus 307 p~--~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L-~L~~--~~~~~l----~ 376 (555)
|. .++.+. +|++|++++|.+..+| .++.+++|++|++++| .+..+|.. +..+.+ | .|.+ ..+..+ .
T Consensus 564 p~~~~l~~L~-~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 564 PASASLQKMV-KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp CCHHHHTTCT-TCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred CChhhhhcCC-CCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhh
Confidence 77 777777 8888888888777777 6777777777777777 45577765 666655 5 3322 222211 1
Q ss_pred CC--cccccccccccc------------------ccceeeeccccccccccccc-ccc----------------------
Q 039821 377 DL--NHLNELWIDRAK------------------ELELLKIDYTEIVRKRREPF-VFR---------------------- 413 (555)
Q Consensus 377 ~l--~~L~~L~l~~~~------------------~l~~l~~~~~~~~~~~~~~~-~~~---------------------- 413 (555)
.+ ++|+.|+++++. .++.+.++.+....++.... .++
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 11 224444444331 12222222222222222211 233
Q ss_pred ---------cccEEEEeecCCCCccc-ccc--cCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCc
Q 039821 414 ---------SLHCVTIHICQKLKDTT-FLV--FAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSH 481 (555)
Q Consensus 414 ---------~L~~L~l~~~~~l~~~~-~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 481 (555)
+|+.|++++| .++.+| .+. .+++|+.|+|++|.... + +..+..+++|+.|++++
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-l------------p~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-F------------PTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-C------------CCGGGGCTTCCEEECCC
T ss_pred ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-c------------chhhhcCCCCCEEECCC
Confidence 5555555555 222332 333 45555555555553221 2 22455677888888865
Q ss_pred ------ccccccccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEechh
Q 039821 482 ------LPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIRGEE 530 (555)
Q Consensus 482 ------~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~~~~ 530 (555)
+.-...+|..+..+++|+.|++++|. +..+|..... .|+.+++++|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~-~L~~LdLs~N~ 838 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTP-QLYILDIADNP 838 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCS-SSCEEECCSCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcC-CCCEEECCCCC
Confidence 33345566666778888888888874 4788876442 37888888763
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=3e-18 Score=183.74 Aligned_cols=267 Identities=12% Similarity=0.162 Sum_probs=153.5
Q ss_pred CccceeEeecccccccc-cc-CCCCCCcceEEEcccCcchh--ccchhHhccC------CcccEEEecCCCCCccccccC
Q 039821 238 GWENVRRLSLMQNQIET-LS-EVPTCPHLLTLFLDFNEDVE--MIADGFFQFM------PSLKVLKMSNCGKSWSNFQLP 307 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~lp 307 (555)
...+++.|++.++.+.. ++ .+.++++|++|+++++..+. .+|.. +..+ ++|++|++++| . +..+|
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~---l~~ip 321 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-N---LKTFP 321 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-C---CSSCC
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-c---CCccC
Confidence 57788889888876543 33 34778888888888765243 34544 4443 77888888777 4 55777
Q ss_pred h--hHhhhhccccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccccchHHHhcccc-c-ccccc--Cccc------
Q 039821 308 V--GMSELGSSLELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSR-D-TTSVI--DATA------ 374 (555)
Q Consensus 308 ~--~~~~l~~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L-~L~~~--~~~~------ 374 (555)
. .++.+. +|++|++++|.+. .+| .++.+++|++|++++| .+..+|.. ++.+.. | .|++. .+..
T Consensus 322 ~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 322 VETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp CHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred chhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhh
Confidence 7 777776 7777777777777 667 6666666677776666 45566655 555555 4 22221 1111
Q ss_pred ------------------------cC-------CCccccccccccc-------------cccceeeeccccccccccccc
Q 039821 375 ------------------------FA-------DLNHLNELWIDRA-------------KELELLKIDYTEIVRKRREPF 410 (555)
Q Consensus 375 ------------------------l~-------~l~~L~~L~l~~~-------------~~l~~l~~~~~~~~~~~~~~~ 410 (555)
++ .+++|+.|+++++ ..++.+.++.+....++....
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 12 2334444444332 122223333222222222211
Q ss_pred c--------cccccEEEEeecCCCCccc-ccc--cCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeec
Q 039821 411 V--------FRSLHCVTIHICQKLKDTT-FLV--FAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRL 479 (555)
Q Consensus 411 ~--------~~~L~~L~l~~~~~l~~~~-~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 479 (555)
. +++|+.|++++|. ++.+| .+. .+++|++|++++|...+ + +..+..+++|+.|++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-i------------p~~~~~l~~L~~L~L 543 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-F------------PTQPLNSSTLKGFGI 543 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSS-C------------CCGGGGCSSCCEEEC
T ss_pred ccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCC-c------------ChhhhcCCCCCEEEC
Confidence 1 1155555555552 22332 333 55566666665553222 2 224566778888888
Q ss_pred Cc------ccccccccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEech
Q 039821 480 SH------LPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIRGE 529 (555)
Q Consensus 480 ~~------~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~~~ 529 (555)
++ +.-...+|.....+++|+.|++++|. ++.+|.... -.|+.+++++|
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCC
Confidence 54 33345666667778888888888864 478887644 23888888876
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=3e-18 Score=183.39 Aligned_cols=264 Identities=17% Similarity=0.154 Sum_probs=160.9
Q ss_pred ccCccceeEeeccccccccccC-CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-Hhhh
Q 039821 236 VKGWENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSEL 313 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l 313 (555)
.....+++.|++.++.+..++. ...+++|++|++.++. +..+++..+..+++|++|++++|.. ...+|.. +..+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTK---RLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSS---CCBCCSSTTTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCc---ccccchhhhhcc
Confidence 3445667777777776666543 3566777777777543 4455444466677777777777633 3244433 5566
Q ss_pred hccccEEEcCCCCCccc---chhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--cc------ccCCCccc
Q 039821 314 GSSLELLDISHTSIREL---PEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT------AFADLNHL 381 (555)
Q Consensus 314 ~~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~------~l~~l~~L 381 (555)
. +|++|++++|.+..+ |..++.+++|++|++++| .+..+++..++.+.+| .|++.+ .. .+..+++|
T Consensus 350 ~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 350 E-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp T-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred C-cCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 5 777777777776665 445667777777777777 3444433335555555 333222 11 24556666
Q ss_pred cccccccccccceeeecccccccccccccccccccEEEEeecCCCC----cccccccCCCCceEEeecCCcchhhhccCc
Q 039821 382 NELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLK----DTTFLVFAPNLKSLSLFHCGAMEEIISVGK 457 (555)
Q Consensus 382 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (555)
+.|+++++.-.. .. +.....+++|+.|++++|.... ....+..+++|++|++++|...+..+
T Consensus 428 ~~L~l~~n~l~~-~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 493 (606)
T 3t6q_A 428 KVLNLSHSLLDI-SS---------EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ---- 493 (606)
T ss_dssp CEEECTTCCCBT-TC---------TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT----
T ss_pred CEEECCCCccCC-cC---------HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh----
Confidence 666666653211 11 1222367888888888874322 11356778888888888885433222
Q ss_pred ccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCC-CCccc-ccceEEech
Q 039821 458 FAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLD-SNSAK-ERKFVIRGE 529 (555)
Q Consensus 458 ~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~-~~~~~-L~~l~i~~~ 529 (555)
..++.+++|+.|+++++.-....+.....++.| .|++++| +++.+|.. ...++ |+.++++++
T Consensus 494 --------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 494 --------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp --------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred --------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 267788999999999874334445566778888 8999887 45555543 34444 888888754
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.3e-18 Score=169.71 Aligned_cols=222 Identities=17% Similarity=0.125 Sum_probs=171.4
Q ss_pred CcceEEEcccCcchh--ccchhHhccCCcccEEEecC-CCCCccccccChhHhhhhccccEEEcCCCCCc-ccchhhhCC
Q 039821 262 PHLLTLFLDFNEDVE--MIADGFFQFMPSLKVLKMSN-CGKSWSNFQLPVGMSELGSSLELLDISHTSIR-ELPEELKKL 337 (555)
Q Consensus 262 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~-~lp~~i~~L 337 (555)
.+++.|+++++.... .++. .+..+++|++|++++ |.. ...+|..++.+. +|++|++++|.+. .+|..++.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNL---VGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTE---ESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcc---cccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCC
Confidence 689999999765333 4555 489999999999995 634 457899999998 9999999999998 788899999
Q ss_pred CCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccc-ccc
Q 039821 338 VNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFR-SLH 416 (555)
Q Consensus 338 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~-~L~ 416 (555)
++|++|++++|.....+|.. ++.+++|++|+++++.-...++... ..++ +|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-----------------~~~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~~L~ 177 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-----------------ISSLPNLVGITFDGNRISGAIPDSY----------GSFSKLFT 177 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-----------------GGGCTTCCEEECCSSCCEEECCGGG----------GCCCTTCC
T ss_pred CCCCEEeCCCCccCCcCChH-----------------HhcCCCCCeEECcCCcccCcCCHHH----------hhhhhcCc
Confidence 99999999999543367763 5778899999998875332333332 2666 999
Q ss_pred EEEEeecCCCCc-ccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCC
Q 039821 417 CVTIHICQKLKD-TTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPF 495 (555)
Q Consensus 417 ~L~l~~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~ 495 (555)
.|++++|..... +..+..++ |++|++++|......+. .+..+++|+.|+++++ .+...+.....+
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~l 243 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV------------LFGSDKNTQKIHLAKN-SLAFDLGKVGLS 243 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG------------GCCTTSCCSEEECCSS-EECCBGGGCCCC
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH------------HHhcCCCCCEEECCCC-ceeeecCccccc
Confidence 999999854423 34677776 99999999965444333 5778999999999996 444333346678
Q ss_pred CCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 496 THLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 496 ~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
++|+.|++++|.--..+|.....++ |+.++++++
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 9999999999865447887777766 899998866
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5e-18 Score=167.21 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=148.4
Q ss_pred eeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEE
Q 039821 242 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELL 320 (555)
Q Consensus 242 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L 320 (555)
++.+.+.++.+..++.. -.+++++|+++++. +..++...|..+++|++|++++| . +..+ |..+..+. +|++|
T Consensus 33 l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L~~L 105 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKD-LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-K---ISKISPGAFAPLV-KLERL 105 (330)
T ss_dssp TTEEECTTSCCCSCCCS-CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-C---CCCBCTTTTTTCT-TCCEE
T ss_pred CeEEEecCCCccccCcc-CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-c---CCeeCHHHhcCCC-CCCEE
Confidence 34444444444443321 12445555555332 44444444555555555555555 2 3333 44455554 55555
Q ss_pred EcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC---------ccccCCCcccccccccccc
Q 039821 321 DISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID---------ATAFADLNHLNELWIDRAK 390 (555)
Q Consensus 321 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~---------~~~l~~l~~L~~L~l~~~~ 390 (555)
++++|.++.+|..+. ++|++|++++| .+..++...++.+.+| .|++.. ...+..+++|++|+++++.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 555555555554432 45555555555 3444444434444444 222211 1145677888888887763
Q ss_pred ccceeeecccccccccccccccccccEEEEeecCCCCcc--cccccCCCCceEEeecCCcchhhhccCcccccccccCCC
Q 039821 391 ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT--TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHI 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~ 468 (555)
++.++ .. ..++|+.|++++|. ++.. ..+..+++|++|++++|...+..+ ..+
T Consensus 183 -l~~l~----------~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~ 236 (330)
T 1xku_A 183 -ITTIP----------QG--LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDN------------GSL 236 (330)
T ss_dssp -CCSCC----------SS--CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECT------------TTG
T ss_pred -cccCC----------cc--ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeCh------------hhc
Confidence 33222 12 24899999999985 4433 478899999999999985433221 146
Q ss_pred CCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCC--------cccccceEEechh
Q 039821 469 SPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSN--------SAKERKFVIRGEE 530 (555)
Q Consensus 469 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~--------~~~L~~l~i~~~~ 530 (555)
..+++|+.|+++++ .+..+|.....+++|+.|+++++ +++.+|...- ...+..+++.+++
T Consensus 237 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 237 ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 77899999999996 78888888888999999999986 5788775432 1226777777654
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.7e-18 Score=166.22 Aligned_cols=241 Identities=21% Similarity=0.200 Sum_probs=175.1
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccc--hhHhccCCcccEEEecC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIA--DGFFQFMPSLKVLKMSN 296 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~ 296 (555)
..+.+.+..+..+|.. -..++++|++.++.+..++. +..+++|++|+++++. +..+. +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCC
Confidence 3455566666776652 33689999999999988876 4789999999999664 44331 23366799999999999
Q ss_pred CCCCccccccChhHhhhhccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccc
Q 039821 297 CGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATA 374 (555)
Q Consensus 297 ~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~ 374 (555)
| . +..+|..+..+. +|++|++++|.+..++. .+..+++|++|++++|. +...+.. .
T Consensus 88 n-~---i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------~ 145 (306)
T 2z66_A 88 N-G---VITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG----------------I 145 (306)
T ss_dssp C-S---EEEEEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT----------------T
T ss_pred C-c---cccChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh----------------h
Confidence 9 6 778888888888 99999999999999875 78899999999999994 4544433 3
Q ss_pred cCCCccccccccccccccc-eeeecccccccccccccccccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhh
Q 039821 375 FADLNHLNELWIDRAKELE-LLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEI 452 (555)
Q Consensus 375 l~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~ 452 (555)
+..+++|++|+++++.... ..+ .....+++|+.|++++|.....+ ..+..+++|++|++++|.... +
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 214 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLP----------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-L 214 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-C
T ss_pred cccCcCCCEEECCCCccccccch----------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-c
Confidence 5778888999888874322 122 22237889999999988433332 367788999999998885332 2
Q ss_pred hccCcccccccccCCCCCCcccceeecCcccccccccccccCCC-CcceEEEcCCC
Q 039821 453 ISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFT-HLKEMVVRGCD 507 (555)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~-~L~~L~l~~C~ 507 (555)
+. ..+..+++|+.|+++++.-....+.....++ +|+.|++++++
T Consensus 215 ~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 215 DT-----------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CS-----------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred Ch-----------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 11 1356678899999998643333444455564 78888887754
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.3e-18 Score=182.26 Aligned_cols=268 Identities=16% Similarity=0.167 Sum_probs=211.5
Q ss_pred CccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhh
Q 039821 238 GWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELG 314 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~ 314 (555)
...+++.+++.++.+..++. +..+++|++|+++++. +..+++..|..+++|++|++++| . +..+|+ .++.+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-A---IRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-C---CCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-c---CCCCCHHHHcCCC
Confidence 34678999999998888876 3778999999999665 77777767999999999999999 5 666655 468887
Q ss_pred ccccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--cc--ccCCCcccccccccc
Q 039821 315 SSLELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--AT--AFADLNHLNELWIDR 388 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--~~--~l~~l~~L~~L~l~~ 388 (555)
+|++|++++|.+..+|.. ++.+++|++|++++| .+..+++..++.+.+| .|.+.+ +. .++.+++|+.|++++
T Consensus 124 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 124 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201 (597)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred -CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence 999999999999999986 589999999999999 5677776558888888 444433 22 346688888888876
Q ss_pred cc--------ccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccc
Q 039821 389 AK--------ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAE 460 (555)
Q Consensus 389 ~~--------~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 460 (555)
+. .++.+.++.+.....+.. ..++|+.|++++| .++.+++++.+++|++|++++|......+.
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~------ 272 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYH------ 272 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEESG------
T ss_pred CccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCccCCCCHH------
Confidence 52 345555555544444433 3578999999998 677788999999999999999965443333
Q ss_pred cccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 461 VPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 461 l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
.++.+++|+.|+++++ .+..++.....+++|+.|++++| .+..+|.....++ |+.+++++|
T Consensus 273 ------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 273 ------PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp ------GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred ------HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC
Confidence 5778999999999995 78888887778999999999997 6778887766666 999999876
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=180.35 Aligned_cols=140 Identities=25% Similarity=0.292 Sum_probs=113.8
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+.++..+|.. -..++++|+++++.+..++ .+..+++|++|+++++. +..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCC-
Confidence 3456666677777752 3468999999999998775 45899999999999764 77788777999999999999999
Q ss_pred CCccccccC-hhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccc--cchHHHhccccc-cccc
Q 039821 299 KSWSNFQLP-VGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNK--IPRQLISNSSRD-TTSV 369 (555)
Q Consensus 299 ~~~~~~~lp-~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L-~L~~ 369 (555)
. +..+| ..++.+. +|++|++++|.+..+|. .++.+++|++|++++| .+.. +|.. ++++.+| +|+.
T Consensus 87 ~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l 156 (570)
T 2z63_A 87 P---IQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDL 156 (570)
T ss_dssp C---CCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEEC
T ss_pred c---CCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeC
Confidence 5 65555 6788888 99999999999999987 6999999999999999 4554 6766 8888887 4443
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=170.49 Aligned_cols=216 Identities=18% Similarity=0.179 Sum_probs=162.2
Q ss_pred eeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcC
Q 039821 245 LSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDIS 323 (555)
Q Consensus 245 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~ 323 (555)
.+..++.+..+|.. -.++|++|+++++. +..++...+.++++|++|++++| . +..+ |..+..+. +|++|+++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-G---INTIEEDSFSSLG-SLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-C---CCEECTTTTTTCT-TCCEEECC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-c---cCccCHhhcCCCC-CCCEEECC
Confidence 56667777777653 34689999999665 77888777999999999999999 5 5555 45688887 99999999
Q ss_pred CCCCcccchh-hhCCCCCcEEccCCCccccccch-HHHhccccccccccCccccCCCccccccccccccccceeeecccc
Q 039821 324 HTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPR-QLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTE 401 (555)
Q Consensus 324 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 401 (555)
+|.++.+|.. ++.+++|++|++++| .+..+|. . .+..+++|++|+++++..+..++...
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~----------------~~~~l~~L~~L~l~~n~~~~~~~~~~-- 169 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETS----------------LFSHLTKLQILRVGNMDTFTKIQRKD-- 169 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSC----------------SCTTCTTCCEEEEEESSSCCEECTTT--
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchh----------------hhccCCCCcEEECCCCccccccCHHH--
Confidence 9999999986 899999999999999 5777775 2 36788999999999986666554322
Q ss_pred cccccccccccccccEEEEeecCCCCc-ccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecC
Q 039821 402 IVRKRREPFVFRSLHCVTIHICQKLKD-TTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLS 480 (555)
Q Consensus 402 ~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 480 (555)
...+++|+.|++++|..... +..+..+++|++|++++|.. +.++.. .+..+++|+.|+++
T Consensus 170 -------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~-----------~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 170 -------FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEI-----------FVDVTSSVECLELR 230 (353)
T ss_dssp -------TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHH-----------HHHHTTTEEEEEEE
T ss_pred -------ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhh-----------hhhhcccccEEECC
Confidence 22789999999999954333 34788999999999999863 433320 23357899999999
Q ss_pred ccccccccccc----ccCCCCcceEEEcCC
Q 039821 481 HLPNLKSIYWK----PLPFTHLKEMVVRGC 506 (555)
Q Consensus 481 ~~~~L~~l~~~----~~~~~~L~~L~l~~C 506 (555)
++ .+..++.. ....+.++.++++++
T Consensus 231 ~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 231 DT-DLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp SC-BCTTCCCC------CCCCCCEEEEESC
T ss_pred CC-ccccccccccccccccchhhccccccc
Confidence 85 55554322 123456777777654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=6.2e-17 Score=159.33 Aligned_cols=274 Identities=16% Similarity=0.191 Sum_probs=192.0
Q ss_pred EEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
.+.+.+..+..+|... ..+++.|++.++.+..++. +..+++|++|++.++. +..+.+..+..+++|++|++++| .
T Consensus 35 ~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (330)
T 1xku_A 35 VVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-Q 111 (330)
T ss_dssp EEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-c
Confidence 3444555555555422 3689999999999988765 5889999999999664 67776666899999999999999 6
Q ss_pred CccccccChhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccc--cchHHHhccccc-cccc--cCcc
Q 039821 300 SWSNFQLPVGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNK--IPRQLISNSSRD-TTSV--IDAT 373 (555)
Q Consensus 300 ~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L-~L~~--~~~~ 373 (555)
+..+|..+. . +|++|++++|.+..++. .+..+++|++|++++|. +.. +....+..+.+| .|.. ..+.
T Consensus 112 ---l~~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 112 ---LKELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ---CSBCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ---CCccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 778887765 4 99999999999999887 58899999999999994 432 333337777777 4433 3333
Q ss_pred ccC--CCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcch
Q 039821 374 AFA--DLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAME 450 (555)
Q Consensus 374 ~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~ 450 (555)
.+. -.++|++|+++++. ++.+... ....+++|+.|++++|......+ .+..+++|++|++++|.. .
T Consensus 185 ~l~~~~~~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~ 253 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNK-ITKVDAA---------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-V 253 (330)
T ss_dssp SCCSSCCTTCSEEECTTSC-CCEECTG---------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-S
T ss_pred cCCccccccCCEEECCCCc-CCccCHH---------HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-c
Confidence 332 23788888888774 4333222 12378999999999984333333 688999999999999843 3
Q ss_pred hhhccCcccccccccCCCCCCcccceeecCccccccccccccc-------CCCCcceEEEcCCCCCC-cc-CCCCCccc-
Q 039821 451 EIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPL-------PFTHLKEMVVRGCDQLE-KL-PLDSNSAK- 520 (555)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-------~~~~L~~L~l~~C~~L~-~l-p~~~~~~~- 520 (555)
.++. .+..+++|++|+++++ .++.++.... ..+.|+.|++.+.+--. .+ |.......
T Consensus 254 ~lp~------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 254 KVPG------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp SCCT------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred cCCh------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 3333 6778899999999985 6776654321 24788999998876321 12 22223333
Q ss_pred ccceEEech
Q 039821 521 ERKFVIRGE 529 (555)
Q Consensus 521 L~~l~i~~~ 529 (555)
++.++++++
T Consensus 321 l~~l~L~~N 329 (330)
T 1xku_A 321 RAAVQLGNY 329 (330)
T ss_dssp GGGEEC---
T ss_pred eeEEEeccc
Confidence 777777665
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.3e-17 Score=171.88 Aligned_cols=264 Identities=15% Similarity=0.158 Sum_probs=170.4
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEc
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDI 322 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l 322 (555)
.+...+..+..++. -.++|++|+++++. +..+++..|.++++|++|++++|.. ...+ |..+..+. +|++|++
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~---~~~i~~~~~~~l~-~L~~L~L 86 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLS-SLIILKL 86 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCST---TCEECTTTTTTCT-TCCEEEC
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcc---cceECcccccccc-cCCEEeC
Confidence 45556666777766 33889999999664 6777666799999999999999943 3345 45688887 9999999
Q ss_pred CCCCCccc-chhhhCCCCCcEEccCCCccccc-cch-HHHhccccc-ccccc--Ccc-----c-cCCCcccccccccccc
Q 039821 323 SHTSIREL-PEELKKLVNLKCLNLRRTELLNK-IPR-QLISNSSRD-TTSVI--DAT-----A-FADLNHLNELWIDRAK 390 (555)
Q Consensus 323 ~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp~-~~i~~l~~L-~L~~~--~~~-----~-l~~l~~L~~L~l~~~~ 390 (555)
++|.+..+ |..++.+++|++|++++|. +.. +|. ..++.+.+| .|++. .+. . +.++++|++|+++++.
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 99999987 6689999999999999994 543 232 235666666 44333 222 2 6788999999988763
Q ss_pred cc---------------ceeeecccccccccc---------ccccccc--------------------------------
Q 039821 391 EL---------------ELLKIDYTEIVRKRR---------EPFVFRS-------------------------------- 414 (555)
Q Consensus 391 ~l---------------~~l~~~~~~~~~~~~---------~~~~~~~-------------------------------- 414 (555)
-. +.+.++.+.....+. .+..+++
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 21 111111111111100 0112233
Q ss_pred -------------------------------ccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccc
Q 039821 415 -------------------------------LHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVP 462 (555)
Q Consensus 415 -------------------------------L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 462 (555)
|+.|++++|.....++ .++.+++|++|++++|...+..+
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------- 316 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--------- 316 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT---------
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh---------
Confidence 4444444442222222 45566666666666664332221
Q ss_pred cccCCCCCCcccceeecCcccccccc-cccccCCCCcceEEEcCCCCCCcc-CCCCCccc-ccceEEech
Q 039821 463 EMMGHISPFENLRLLRLSHLPNLKSI-YWKPLPFTHLKEMVVRGCDQLEKL-PLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 463 ~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~~~~L~~L~l~~C~~L~~l-p~~~~~~~-L~~l~i~~~ 529 (555)
..++.+++|++|+++++ .+..+ +.....+++|+.|++++| +++.+ |.....++ |+.++++++
T Consensus 317 ---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 317 ---NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ---hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 25677889999999886 55555 445567899999999887 45555 55555556 888888865
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3e-17 Score=173.57 Aligned_cols=250 Identities=21% Similarity=0.165 Sum_probs=178.4
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
..+.+.+..+..+|.... .+++.|.+.++.+..++. .+++|++|++++|. +..+|. .+++|++|++++| .
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~- 112 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN-P- 112 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC-C-
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC-c-
Confidence 345555666666665333 789999999999988876 68999999999665 667765 5789999999999 6
Q ss_pred ccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCcccc-CCCc
Q 039821 301 WSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAF-ADLN 379 (555)
Q Consensus 301 ~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l-~~l~ 379 (555)
+..+|. .+. +|++|++++|.++.+|.. +++|++|++++| .+..+|.. +.++..|.+....+..+ ..++
T Consensus 113 --l~~l~~---~l~-~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 113 --LTHLPA---LPS-GLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp --CCCCCC---CCT-TCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC-CTTCCEEECCSSCCSCCCCCCT
T ss_pred --CCCCCC---CCC-CcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc-cCCCCEEECCCCCCCCCcccCC
Confidence 777776 344 999999999999999874 589999999999 67788764 56666665554444433 2346
Q ss_pred cccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccc
Q 039821 380 HLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFA 459 (555)
Q Consensus 380 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 459 (555)
+|+.|+++++. ++.++. .+++|+.|++++| .++.++. .+++|++|++++|. +..++
T Consensus 182 ~L~~L~Ls~N~-l~~l~~-------------~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp------ 237 (622)
T 3g06_A 182 GLQELSVSDNQ-LASLPT-------------LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP------ 237 (622)
T ss_dssp TCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC------
T ss_pred CCcEEECCCCC-CCCCCC-------------ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC------
Confidence 77777777652 332221 3567888888877 4555542 35788888888773 22221
Q ss_pred ccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 460 EVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 460 ~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
..+++|+.|+++++ .++.+|. .+++|+.|++++| +++.+|.....++ |+.+++++|
T Consensus 238 ---------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 238 ---------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ---------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred ---------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 34577888888885 6777765 5678888888886 6778877666666 788888765
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=5.1e-17 Score=170.51 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=71.2
Q ss_pred ccCccceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccc--ccChhHh
Q 039821 236 VKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNF--QLPVGMS 311 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~lp~~~~ 311 (555)
.....+++.|++.++.+..+. .+..+++|++|+++++. +..+|.. .+++|++|++++| . +. .+|..++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~L~~N-~---l~~~~~p~~~~ 112 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH---PTVNLKHLDLSFN-A---FDALPICKEFG 112 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC---CCCCCSEEECCSS-C---CSSCCCCGGGG
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc---ccCCccEEeccCC-c---cccccchhhhc
Confidence 345667888888888777652 34777888888888554 5566654 6788888888887 3 33 3567777
Q ss_pred hhhccccEEEcCCCCCcccchhhhCCCCC--cEEccCCCc
Q 039821 312 ELGSSLELLDISHTSIRELPEELKKLVNL--KCLNLRRTE 349 (555)
Q Consensus 312 ~l~~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~ 349 (555)
.+. +|++|++++|.+.. ..+..+++| ++|++++|.
T Consensus 113 ~l~-~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 113 NMS-QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp GCT-TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred cCC-cceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 777 88888888877765 345556666 777766663
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=7.8e-17 Score=158.75 Aligned_cols=265 Identities=19% Similarity=0.197 Sum_probs=193.2
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLEL 319 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~ 319 (555)
+++.+.+.++.+..++... .++|++|+++++. +..+++..|..+++|++|++++| . +..+ |..++.+. +|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-K---ISKIHEKAFSPLR-KLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-C---CCEECGGGSTTCT-TCCE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-c---cCccCHhHhhCcC-CCCE
Confidence 5788888888887776533 4789999999665 77777767899999999999999 4 5555 67788888 9999
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-ccccc--Cc-------cccCCCccccccccccc
Q 039821 320 LDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVI--DA-------TAFADLNHLNELWIDRA 389 (555)
Q Consensus 320 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~--~~-------~~l~~l~~L~~L~l~~~ 389 (555)
|++++|.+..+|..+. ++|++|++++| .+..+|...++.+.+| .|+.. .. ..+..+ +|+.|+++++
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 9999999999998765 89999999999 6788887767888887 44332 22 134445 7888877765
Q ss_pred c----------ccceeeeccccccccc-ccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCc
Q 039821 390 K----------ELELLKIDYTEIVRKR-REPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGK 457 (555)
Q Consensus 390 ~----------~l~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (555)
. .++.+.++.+.....+ .....+++|+.|++++|.....++ .+..+++|++|++++|.. ..++.
T Consensus 183 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~--- 258 (332)
T 2ft3_A 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPA--- 258 (332)
T ss_dssp BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCT---
T ss_pred CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecCh---
Confidence 3 5666777666555544 345578999999999984333333 688999999999999843 33333
Q ss_pred ccccccccCCCCCCcccceeecCccccccccccccc-------CCCCcceEEEcCCCCC--CccCCCCCccc-ccceEEe
Q 039821 458 FAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPL-------PFTHLKEMVVRGCDQL--EKLPLDSNSAK-ERKFVIR 527 (555)
Q Consensus 458 ~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-------~~~~L~~L~l~~C~~L--~~lp~~~~~~~-L~~l~i~ 527 (555)
.+..+++|+.|+++++ .++.++.... .++.|+.|++.+++-. ...|.....+. |+.+++.
T Consensus 259 ---------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 259 ---------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp ---------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ---------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 5778899999999985 6776654211 1577999999998744 23343344455 8888888
Q ss_pred chh
Q 039821 528 GEE 530 (555)
Q Consensus 528 ~~~ 530 (555)
+++
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=2.8e-17 Score=168.65 Aligned_cols=269 Identities=16% Similarity=0.119 Sum_probs=183.2
Q ss_pred ccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhc
Q 039821 236 VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGS 315 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~ 315 (555)
.....+++.|++.++.+..++....+++|++|+++++. +..++ +..+++|++|++++| . +..+| ++.+.
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N-~---l~~~~--~~~l~- 106 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSN-K---LTNLD--VTPLT- 106 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS-C---CSCCC--CTTCT-
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCC-C---Cceee--cCCCC-
Confidence 34457899999999999988888899999999999765 66664 788999999999999 5 66665 78887
Q ss_pred cccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCcc-----ccCCCccccccccccc
Q 039821 316 SLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDAT-----AFADLNHLNELWIDRA 389 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~~-----~l~~l~~L~~L~l~~~ 389 (555)
+|++|++++|.+..+| ++.+++|++|++++| .+..+| ++.+..| .|+..... .++.+++|+.|+++++
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 9999999999999987 889999999999999 577775 5666666 44433321 4567778888887776
Q ss_pred cccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccccccccc----
Q 039821 390 KELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMM---- 465 (555)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~---- 465 (555)
.++.++ ...+++|+.|++++| .++.+ .++.+++|++|++++|...+ ++ ...+..+..+.
T Consensus 181 -~l~~l~------------l~~l~~L~~L~l~~N-~l~~~-~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 181 -KITELD------------VSQNKLLNRLNCDTN-NITKL-DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -CCCCCC------------CTTCTTCCEEECCSS-CCSCC-CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred -ccceec------------cccCCCCCEEECcCC-cCCee-ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 333332 227899999999998 45555 47889999999999985433 32 22221111110
Q ss_pred ----CCCCCCcccc----------eeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEechhh
Q 039821 466 ----GHISPFENLR----------LLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIRGEED 531 (555)
Q Consensus 466 ----~~~~~~~~L~----------~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~~~~~ 531 (555)
...+.+++|+ .|++++|..+..+| ...+++|+.|++++|+.++.+|..... ++.+++++++.
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~--L~~L~l~~~~~ 319 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG--ITELDLSQNPK 319 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC--CSCCCCTTCTT
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc--ceEechhhccc
Confidence 0122333333 33444444444444 235678888888888877777754333 45555555432
Q ss_pred hhhccccCchhh
Q 039821 532 WWNLLQWEDEST 543 (555)
Q Consensus 532 ~~~~~~~~~~~~ 543 (555)
.+.+....+.+
T Consensus 320 -L~~L~L~~N~l 330 (457)
T 3bz5_A 320 -LVYLYLNNTEL 330 (457)
T ss_dssp -CCEEECTTCCC
T ss_pred -CCEEECCCCcc
Confidence 23344444433
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=1.2e-17 Score=176.46 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=92.7
Q ss_pred ccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccc--ccChhHh
Q 039821 236 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNF--QLPVGMS 311 (555)
Q Consensus 236 ~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~lp~~~~ 311 (555)
.....++++|++.++.+..++. +..+++|++|+++++. +..+++..+..+++|++|++++| . +. ..|..++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~---l~~~~~~~~~~ 120 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-P---YQTLGVTSLFP 120 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-C---CSSSCSSCSCT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-c---ccccchhhhhh
Confidence 4566789999999998877653 5888999999999664 77777777889999999999998 4 44 3466778
Q ss_pred hhhccccEEEcCCCC-Ccccch-hhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 312 ELGSSLELLDISHTS-IRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 312 ~l~~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
.+. +|++|++++|. +..+|. .++.+++|++|++++|......|.. ++.+.+|
T Consensus 121 ~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L 174 (549)
T 2z81_A 121 NLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDI 174 (549)
T ss_dssp TCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEE
T ss_pred ccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccC
Confidence 887 89999998886 677764 6888888888888887433334433 5555544
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.3e-18 Score=170.32 Aligned_cols=134 Identities=12% Similarity=0.001 Sum_probs=67.9
Q ss_pred cCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhc
Q 039821 375 FADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIIS 454 (555)
Q Consensus 375 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 454 (555)
++.+++|+.|+++++ .+......... ..+++|+.|++++| .++.++....+++|++|++++|.. ..++.
T Consensus 140 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~l~~ 208 (317)
T 3o53_A 140 EGCRSRVQYLDLKLN-EIDTVNFAELA--------ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMGP 208 (317)
T ss_dssp TGGGSSEEEEECTTS-CCCEEEGGGGG--------GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEECG
T ss_pred hhccCCCCEEECCCC-CCCcccHHHHh--------hccCcCCEEECCCC-cCcccccccccccCCEEECCCCcC-Ccchh
Confidence 344566666666555 22222221110 13566666666666 344444444566666666666632 22222
Q ss_pred cCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCC-CccCCCCCccc-ccceEEechhhh
Q 039821 455 VGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQL-EKLPLDSNSAK-ERKFVIRGEEDW 532 (555)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L-~~lp~~~~~~~-L~~l~i~~~~~~ 532 (555)
.+..+++|+.|+++++ .++.+|.....+++|+.|++++++-- ..+|.....+. |+.+.+.++..+
T Consensus 209 ------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 209 ------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 2445566666666664 55556555555666666666665433 23443333333 555555544333
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=4.1e-17 Score=157.05 Aligned_cols=214 Identities=19% Similarity=0.199 Sum_probs=104.6
Q ss_pred eeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcC
Q 039821 245 LSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDIS 323 (555)
Q Consensus 245 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~ 323 (555)
++..++.+..+|. .-.++|++|+++++. +..++...|..+++|++|++++| . +..+ |..+..+. +|++|+++
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~---l~~~~~~~~~~l~-~L~~L~l~ 88 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-V---LARIDAAAFTGLA-LLEQLDLS 88 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-C---CCEECTTTTTTCT-TCCEEECC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-c---cceeCHhhcCCcc-CCCEEeCC
Confidence 3344444444332 123455666665332 44455444555666666666655 3 3333 44455554 66666666
Q ss_pred CCC-Cccc-chhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccc
Q 039821 324 HTS-IREL-PEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTE 401 (555)
Q Consensus 324 ~~~-i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 401 (555)
+|. +..+ |..+..+++|++|++++| .+..+++. .+..+++|++|+++++. ++.++...
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----------------~~~~l~~L~~L~l~~n~-l~~~~~~~-- 148 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPG----------------LFRGLAALQYLYLQDNA-LQALPDDT-- 148 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT----------------TTTTCTTCCEEECCSSC-CCCCCTTT--
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHh----------------HhhCCcCCCEEECCCCc-ccccCHhH--
Confidence 664 5555 335555666666666665 34444332 23445555555555442 22221110
Q ss_pred cccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeec
Q 039821 402 IVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRL 479 (555)
Q Consensus 402 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 479 (555)
...+++|+.|++++| .++.++ .+..+++|++|++++|...+..+. .+..+++|+.|++
T Consensus 149 -------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l 208 (285)
T 1ozn_A 149 -------FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPH------------AFRDLGRLMTLYL 208 (285)
T ss_dssp -------TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEEC
T ss_pred -------hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHh------------HccCcccccEeeC
Confidence 114555666666655 333322 255566666666666543222111 4455566666666
Q ss_pred Ccccccccccc-cccCCCCcceEEEcCC
Q 039821 480 SHLPNLKSIYW-KPLPFTHLKEMVVRGC 506 (555)
Q Consensus 480 ~~~~~L~~l~~-~~~~~~~L~~L~l~~C 506 (555)
+++ .+..++. ....+++|+.|+++++
T Consensus 209 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 209 FAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 653 4444432 2344566666666554
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.1e-16 Score=172.21 Aligned_cols=117 Identities=26% Similarity=0.339 Sum_probs=68.8
Q ss_pred EcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcc
Q 039821 225 CAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWS 302 (555)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 302 (555)
+.+.++..+|.. -..++++|++++|.+..++. +..+++|++|++++| .+..+++.+|.++++|++|+|++| .
T Consensus 38 c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~--- 111 (635)
T 4g8a_A 38 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-P--- 111 (635)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C---
T ss_pred CCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-c---
Confidence 344455555532 12456777777776666553 366667777777644 355666666666666677766666 4
Q ss_pred ccccChh-HhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCC
Q 039821 303 NFQLPVG-MSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 303 ~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 348 (555)
+..+|.. +..+. +|++|++++|+++.+|. .++.+++|++|++++|
T Consensus 112 l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 112 IQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 5555543 45555 66666666666666554 3555556666665555
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=1.2e-16 Score=169.18 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=107.5
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLEL 319 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~ 319 (555)
..+++++.++.+..+|... .++|++|+++++. +..+++..|..+++|++|++++| . +..+ |..+..+. +|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~---l~~~~~~~~~~l~-~L~~ 104 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-R---IRSLDFHVFLFNQ-DLEY 104 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-C---CCEECTTTTTTCT-TCCE
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-C---CCcCCHHHhCCCC-CCCE
Confidence 3478999999988877643 3899999999665 77888777999999999999999 5 6666 67788888 9999
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEccCCCccccccch-HHHhccccc-cccccC--cc--ccCCCccc--cccccccc
Q 039821 320 LDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPR-QLISNSSRD-TTSVID--AT--AFADLNHL--NELWIDRA 389 (555)
Q Consensus 320 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L-~L~~~~--~~--~l~~l~~L--~~L~l~~~ 389 (555)
|++++|.++.+|.. .+++|++|++++| .+..+|. ..++++.+| .|++.+ +. .+..+++| +.|+++++
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence 99999999999987 8999999999999 5666652 338888888 443332 22 34445555 77766654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.6e-16 Score=152.99 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=163.7
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+.+.+..+..+|. ....++++|++.++.+..++. +..+++|++|+++++. +..+.+..+..+++|++|++++|..
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~- 92 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQ- 92 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTT-
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCC-
Confidence 4445555666654 235689999999999988764 5889999999999664 7777666789999999999999964
Q ss_pred cccccc-ChhHhhhhccccEEEcCCCCCcccc-hhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCC
Q 039821 301 WSNFQL-PVGMSELGSSLELLDISHTSIRELP-EELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADL 378 (555)
Q Consensus 301 ~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l 378 (555)
+..+ |..+..+. +|++|++++|.+..++ ..+..+++|++|++++| .+..+|.. .++.+
T Consensus 93 --l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----------------~~~~l 152 (285)
T 1ozn_A 93 --LRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD----------------TFRDL 152 (285)
T ss_dssp --CCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------------TTTTC
T ss_pred --ccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHh----------------HhccC
Confidence 5555 66788887 9999999999999885 47889999999999999 57777764 35778
Q ss_pred ccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCc-ccccccCCCCceEEeecCCcchhhhccCc
Q 039821 379 NHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD-TTFLVFAPNLKSLSLFHCGAMEEIISVGK 457 (555)
Q Consensus 379 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (555)
++|++|+++++ .++.++... ...+++|+.|++++|..... +..+..+++|++|++++|...+ ++.
T Consensus 153 ~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~--- 218 (285)
T 1ozn_A 153 GNLTHLFLHGN-RISSVPERA---------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPT--- 218 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCH---
T ss_pred CCccEEECCCC-cccccCHHH---------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCH---
Confidence 88888888887 444443321 12688999999998853333 3467888999999999885432 221
Q ss_pred ccccccccCCCCCCcccceeecCccc
Q 039821 458 FAEVPEMMGHISPFENLRLLRLSHLP 483 (555)
Q Consensus 458 ~~~l~~~~~~~~~~~~L~~L~l~~~~ 483 (555)
..+..+++|+.|++++++
T Consensus 219 --------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 --------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp --------HHHTTCTTCCEEECCSSC
T ss_pred --------HHcccCcccCEEeccCCC
Confidence 135678899999998854
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=2.5e-16 Score=170.87 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=110.9
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~ 321 (555)
+.++.++..+..+|..- .+++++|+++++. +..+++..|.++++|++|++++| . +..+ |..++.+. +|++|+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~---l~~~~~~~~~~l~-~L~~L~ 79 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFN-T---ISKLEPELCQKLP-MLKVLN 79 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSS-C---CCCCCTTHHHHCT-TCCEEE
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCC-c---cCccCHHHHhccc-CcCEEE
Confidence 34666777777776532 3789999999664 77888877999999999999999 4 4444 67788998 999999
Q ss_pred cCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC-------ccccCCCccccccccccc
Q 039821 322 ISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID-------ATAFADLNHLNELWIDRA 389 (555)
Q Consensus 322 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~-------~~~l~~l~~L~~L~l~~~ 389 (555)
+++|.+..+|. .++.+++|++|++++| .+..+|+..++++.+| +|++.. ...++.+++|++|+++++
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 99999999998 5999999999999999 5778876558888888 444433 224678899999988775
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.5e-16 Score=154.77 Aligned_cols=195 Identities=22% Similarity=0.267 Sum_probs=136.5
Q ss_pred CccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 238 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
.+.+++.|++.++.+..++....+++|++|+++++. +..++. +..+++|++|++++| . +..++ .+..+. +|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n-~---l~~~~-~~~~l~-~L 109 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGN-P---LKNVS-AIAGLQ-SI 109 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSC-C---CSCCG-GGTTCT-TC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCC-c---CCCch-hhcCCC-CC
Confidence 456788888888888877777788888888888654 666665 778888888888888 4 55554 577776 88
Q ss_pred cEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeee
Q 039821 318 ELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKI 397 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 397 (555)
++|++++|.+..+|. +..+++|++|++++| .+..++. ++.+++|+.|+++++ .+..++.
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~------------------l~~l~~L~~L~l~~n-~l~~~~~ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP------------------LAGLTNLQYLSIGNA-QVSDLTP 168 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG------------------GGGCTTCCEEECCSS-CCCCCGG
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc------------------ccCCCCccEEEccCC-cCCCChh
Confidence 888888888888775 788888888888888 5666654 355667777777766 2332221
Q ss_pred cccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCccccee
Q 039821 398 DYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLL 477 (555)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L 477 (555)
...+++|+.|++++| .++.++.+..+++|++|++++|... .++ .+..+++|+.|
T Consensus 169 -----------l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~-~~~-------------~l~~l~~L~~L 222 (308)
T 1h6u_A 169 -----------LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQIS-DVS-------------PLANTSNLFIV 222 (308)
T ss_dssp -----------GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCCC-BCG-------------GGTTCTTCCEE
T ss_pred -----------hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCccC-ccc-------------cccCCCCCCEE
Confidence 126777888888877 5555666777888888888777432 111 24567778888
Q ss_pred ecCccccccccc
Q 039821 478 RLSHLPNLKSIY 489 (555)
Q Consensus 478 ~l~~~~~L~~l~ 489 (555)
+++++ .+...|
T Consensus 223 ~l~~N-~i~~~~ 233 (308)
T 1h6u_A 223 TLTNQ-TITNQP 233 (308)
T ss_dssp EEEEE-EEECCC
T ss_pred EccCC-eeecCC
Confidence 88774 344433
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=173.48 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=174.6
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~ 321 (555)
+..+.++..+..+|. -.++|++|+++++. +..+.+..|..+++|++|++++|.. ...+ |..+..+. +|++|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~-~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLP-NLRILD 79 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCT-TCCEEE
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCC-CCCEEE
Confidence 445666677777776 56899999999665 7777666699999999999999955 5666 67888998 999999
Q ss_pred cCCCCCccc-chhhhCCCCCcEEccCCCccccccch-HHHhccccc-cccc--cCc------cccCCCcccccccccccc
Q 039821 322 ISHTSIREL-PEELKKLVNLKCLNLRRTELLNKIPR-QLISNSSRD-TTSV--IDA------TAFADLNHLNELWIDRAK 390 (555)
Q Consensus 322 l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L-~L~~--~~~------~~l~~l~~L~~L~l~~~~ 390 (555)
|++|.+..+ |..++.+++|++|++++|.....+|. ..++++.+| .|++ ... ..|+++++|++|+++++.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 999999988 66899999999999999943333443 236677777 4433 222 246788999999887752
Q ss_pred ---------------ccceeeeccccccc-ccccccc-------------------------------------------
Q 039821 391 ---------------ELELLKIDYTEIVR-KRREPFV------------------------------------------- 411 (555)
Q Consensus 391 ---------------~l~~l~~~~~~~~~-~~~~~~~------------------------------------------- 411 (555)
.++.+.++.+.... .+.....
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 22222222221111 0000001
Q ss_pred -------------------------cccccEEEEeecCCCCcc-cccccCCCCceEEeecCCcchhhhccCccccccccc
Q 039821 412 -------------------------FRSLHCVTIHICQKLKDT-TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMM 465 (555)
Q Consensus 412 -------------------------~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 465 (555)
.++|+.|++++|...... ..+..+++|+.|++++|...+..+
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------ 307 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------------ 307 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------------
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------------
Confidence 133444444444211111 134455666666666653322211
Q ss_pred CCCCCCcccceeecCcccccccc-cccccCCCCcceEEEcCCCCCCccCCC-CCccc-ccceEEechh
Q 039821 466 GHISPFENLRLLRLSHLPNLKSI-YWKPLPFTHLKEMVVRGCDQLEKLPLD-SNSAK-ERKFVIRGEE 530 (555)
Q Consensus 466 ~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~~~~L~~L~l~~C~~L~~lp~~-~~~~~-L~~l~i~~~~ 530 (555)
..+..+++|++|+++++ .+..+ +.....+++|+.|+++++ ++..++.. ...++ |+.++++++.
T Consensus 308 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 25677888888888885 45444 445667888999999887 67777653 34455 8999998763
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.3e-17 Score=168.77 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=127.3
Q ss_pred cceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 240 ENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
++++.|+++++.+..++ .+..+++|++|++++|. +...++ +..+++|++|++++| . +..+|.. . +|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~---l~~l~~~----~-~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN-Y---VQELLVG----P-SI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSS-E---EEEEEEC----T-TC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCC-c---CCCCCCC----C-Cc
Confidence 46777777777776654 34677777777777554 444433 667777777777777 4 5555432 3 77
Q ss_pred cEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeee
Q 039821 318 ELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKI 397 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 397 (555)
++|++++|.+..+|.. .+++|++|++++| .+..+++. .++.+++|+.|+++++. +.....
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDL----------------DEGCRSRVQYLDLKLNE-IDTVNF 161 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGB----------------CGGGGSSEEEEECTTSC-CCEEEG
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCch----------------hhcCCCCCCEEECCCCC-CCCcCh
Confidence 7777777777776653 4577777777777 45555432 24455666666666552 222221
Q ss_pred cccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCccccee
Q 039821 398 DYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLL 477 (555)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L 477 (555)
.... ..+++|+.|++++| .++.++....+++|++|++++|.. ..+++ .+..+++|+.|
T Consensus 162 ~~l~--------~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~------------~~~~l~~L~~L 219 (487)
T 3oja_A 162 AELA--------ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMGP------------EFQSAAGVTWI 219 (487)
T ss_dssp GGGG--------GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEECG------------GGGGGTTCSEE
T ss_pred HHHh--------hhCCcccEEecCCC-ccccccccccCCCCCEEECCCCCC-CCCCH------------hHcCCCCccEE
Confidence 1110 04566667777666 344445455566677777766632 22222 34456666677
Q ss_pred ecCcccccccccccccCCCCcceEEEcCCCC
Q 039821 478 RLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQ 508 (555)
Q Consensus 478 ~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~ 508 (555)
+++++ .+..+|.....+++|+.|++++++-
T Consensus 220 ~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 76663 5555665555666666666666543
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.8e-16 Score=154.07 Aligned_cols=204 Identities=17% Similarity=0.214 Sum_probs=159.4
Q ss_pred cccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccc
Q 039821 252 IETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELP 331 (555)
Q Consensus 252 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp 331 (555)
+........+++|++|++.++. +..++. +..+++|++|++++| . +..++. +..+. +|++|++++|.+..+|
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~-i~~l~~--~~~l~~L~~L~L~~n-~---i~~~~~-~~~l~-~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDN-Q---ITDLAP-LKNLT-KITELELSGNPLKNVS 101 (308)
T ss_dssp TTSEECHHHHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSS-C---CCCCGG-GTTCC-SCCEEECCSCCCSCCG
T ss_pred cCceecHHHcCCcCEEEeeCCC-ccCchh--hhccCCCCEEEccCC-c---CCCChh-HccCC-CCCEEEccCCcCCCch
Confidence 3333344567899999999664 666653 788999999999999 6 777776 88887 9999999999999987
Q ss_pred hhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccc
Q 039821 332 EELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFV 411 (555)
Q Consensus 332 ~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (555)
.+..+++|++|++++| .+..+|. +..+++|++|+++++. +..++. ...
T Consensus 102 -~~~~l~~L~~L~l~~n-~l~~~~~------------------l~~l~~L~~L~l~~n~-l~~~~~-----------l~~ 149 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTST-QITDVTP------------------LAGLSNLQVLYLDLNQ-ITNISP-----------LAG 149 (308)
T ss_dssp -GGTTCTTCCEEECTTS-CCCCCGG------------------GTTCTTCCEEECCSSC-CCCCGG-----------GGG
T ss_pred -hhcCCCCCCEEECCCC-CCCCchh------------------hcCCCCCCEEECCCCc-cCcCcc-----------ccC
Confidence 5889999999999999 5677764 4678889999988873 333321 227
Q ss_pred cccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccccc
Q 039821 412 FRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWK 491 (555)
Q Consensus 412 ~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 491 (555)
+++|+.|++++| .++.++.+..+++|++|++++|.. ..++ .+..+++|+.|+++++ .+..++.
T Consensus 150 l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~-------------~l~~l~~L~~L~L~~N-~l~~~~~- 212 (308)
T 1h6u_A 150 LTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKI-SDIS-------------PLASLPNLIEVHLKNN-QISDVSP- 212 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCCEEECTTS-CCCBCGG-
T ss_pred CCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCcc-CcCh-------------hhcCCCCCCEEEccCC-ccCcccc-
Confidence 899999999999 666777789999999999999853 2221 2567899999999996 6666663
Q ss_pred ccCCCCcceEEEcCCCCCCccCC
Q 039821 492 PLPFTHLKEMVVRGCDQLEKLPL 514 (555)
Q Consensus 492 ~~~~~~L~~L~l~~C~~L~~lp~ 514 (555)
...+++|+.|++++++ ++..|.
T Consensus 213 l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCCCCCCEEEccCCe-eecCCe
Confidence 5778999999999874 555444
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-16 Score=155.91 Aligned_cols=214 Identities=14% Similarity=0.133 Sum_probs=152.4
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLV 338 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~ 338 (555)
..+++|++|+++++. +..+++..+..+++|++|++++| . +...++ +..+. +|++|++++|.++.+|. .+
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~---l~~~~~-~~~l~-~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-V---LYETLD-LESLS-TLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-C---CEEEEE-ETTCT-TCCEEECCSSEEEEEEE----CT
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-c---CCcchh-hhhcC-CCCEEECcCCccccccC----CC
Confidence 456677777777553 66666666777777888888777 4 444443 66666 77888887777776663 37
Q ss_pred CCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEE
Q 039821 339 NLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCV 418 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 418 (555)
+|++|++++| .+..++. ..+++|++|+++++. ++.++.. ....+++|+.|
T Consensus 100 ~L~~L~l~~n-~l~~~~~-------------------~~~~~L~~L~l~~N~-l~~~~~~---------~~~~l~~L~~L 149 (317)
T 3o53_A 100 SIETLHAANN-NISRVSC-------------------SRGQGKKNIYLANNK-ITMLRDL---------DEGCRSRVQYL 149 (317)
T ss_dssp TCCEEECCSS-CCSEEEE-------------------CCCSSCEEEECCSSC-CCSGGGB---------CTGGGSSEEEE
T ss_pred CcCEEECCCC-ccCCcCc-------------------cccCCCCEEECCCCC-CCCccch---------hhhccCCCCEE
Confidence 7777777777 4555554 346778888888773 3222211 12268999999
Q ss_pred EEeecCCCCcc-ccc-ccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCC
Q 039821 419 TIHICQKLKDT-TFL-VFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFT 496 (555)
Q Consensus 419 ~l~~~~~l~~~-~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~ 496 (555)
++++|...... ..+ ..+++|++|++++|.. +.++ ....+++|+.|+++++ .+..++.....++
T Consensus 150 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 214 (317)
T 3o53_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (317)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEE-------------CCCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred ECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cccc-------------cccccccCCEEECCCC-cCCcchhhhcccC
Confidence 99998433322 233 4789999999999853 3222 2335899999999995 7888877778899
Q ss_pred CcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 497 HLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 497 ~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
+|+.|+++++ +++.+|......+ |+.++++++
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred cccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 9999999997 7889998877766 999999865
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=1.8e-15 Score=154.99 Aligned_cols=134 Identities=24% Similarity=0.329 Sum_probs=90.8
Q ss_pred cceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccE
Q 039821 240 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLEL 319 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~ 319 (555)
.+++.|++.++.+..++... ++|++|+++++. +..+|. +..+++|++|++++| . +..+|..+ . +|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L~l~~N-~---l~~lp~~~---~-~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQ-LEKLPE--LQNSSFLKIIDVDNN-S---LKKLPDLP---P-SLEF 177 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSS-C---CSCCCCCC---T-TCCE
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCC-CCCCcc--cCCCCCCCEEECCCC-c---CcccCCCc---c-cccE
Confidence 56777777777666654432 678888888654 556662 778888888888888 4 55566543 2 7888
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccC---ccccCCCccccccccccc
Q 039821 320 LDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVID---ATAFADLNHLNELWIDRA 389 (555)
Q Consensus 320 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~---~~~l~~l~~L~~L~l~~~ 389 (555)
|++++|.+..+| +++.+++|++|++++| .+..+|.. ..+++.|.++... +..++.+++|++|+++++
T Consensus 178 L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~-~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 178 IAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred EECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC-cCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 888888888877 5788888888888888 46666653 4455555333322 224566777777777665
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.4e-16 Score=147.41 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=103.9
Q ss_pred cceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEcCC-CCCcccch-hhhCCCC
Q 039821 263 HLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISH-TSIRELPE-ELKKLVN 339 (555)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~-~~i~~lp~-~i~~L~~ 339 (555)
+|++|++.++. +..++...|..+++|++|++++|.. +..+|. .+..+. +|++|++++ +.++.+|. .+..+++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~---l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVT---LQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSS---CCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCC---cceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 45555555332 4445444455555556665555532 333433 344444 556666655 55555553 3455555
Q ss_pred CcEEccCCCccccccchHHHhccccccccccCccccCCCcccc---ccccccccccceeeeccccccccccccccccccc
Q 039821 340 LKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLN---ELWIDRAKELELLKIDYTEIVRKRREPFVFRSLH 416 (555)
Q Consensus 340 L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 416 (555)
|++|++++| .+..+|. +..+++|+ .|+++++..++.++.... ..+++|+
T Consensus 107 L~~L~l~~n-~l~~lp~------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---------~~l~~L~ 158 (239)
T 2xwt_C 107 LKFLGIFNT-GLKMFPD------------------LTKVYSTDIFFILEITDNPYMTSIPVNAF---------QGLCNET 158 (239)
T ss_dssp CCEEEEEEE-CCCSCCC------------------CTTCCBCCSEEEEEEESCTTCCEECTTTT---------TTTBSSE
T ss_pred CCEEeCCCC-CCccccc------------------cccccccccccEEECCCCcchhhcCcccc---------cchhcce
Confidence 666666555 3444443 22233333 555555434443332211 1455666
Q ss_pred -EEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCC-cccceeecCccccccccccccc
Q 039821 417 -CVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPF-ENLRLLRLSHLPNLKSIYWKPL 493 (555)
Q Consensus 417 -~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~ 493 (555)
.|++++| .++.++ .....++|++|++++|..++.++. ..+..+ ++|+.|++++ ..++.+|..
T Consensus 159 ~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L~l~~-N~l~~l~~~-- 223 (239)
T 2xwt_C 159 LTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLLDVSQ-TSVTALPSK-- 223 (239)
T ss_dssp EEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEEECTT-CCCCCCCCT--
T ss_pred eEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEEECCC-CccccCChh--
Confidence 6666665 333333 222226777777777754444432 145566 7788888877 466666644
Q ss_pred CCCCcceEEEcCCCCC
Q 039821 494 PFTHLKEMVVRGCDQL 509 (555)
Q Consensus 494 ~~~~L~~L~l~~C~~L 509 (555)
.+++|+.|.+.++..|
T Consensus 224 ~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 224 GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCTTCSEEECTTC---
T ss_pred HhccCceeeccCccCC
Confidence 5778888888777654
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.7e-16 Score=148.47 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=55.2
Q ss_pred ceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecC-CCCCccccccCh-hHhhhhcc
Q 039821 241 NVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSN-CGKSWSNFQLPV-GMSELGSS 316 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~lp~-~~~~l~~~ 316 (555)
+++.|++.++.+..++. +..+++|++|+++++..+..+++..|..+++|++|++++ | . +..+|. .+..+. +
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~---l~~i~~~~f~~l~-~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-N---LTYIDPDALKELP-L 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-T---CCEECTTSEECCT-T
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-C---eeEcCHHHhCCCC-C
Confidence 55555555555554443 245555555555544334445444455555555555554 3 3 444432 334444 5
Q ss_pred ccEEEcCCCCCcccchhhhCCCCCc---EEccCCCccccccch
Q 039821 317 LELLDISHTSIRELPEELKKLVNLK---CLNLRRTELLNKIPR 356 (555)
Q Consensus 317 L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~ 356 (555)
|++|++++|.++.+|. ++.+.+|+ +|++++|..+..+|.
T Consensus 107 L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp CCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred CCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc
Confidence 5555555555555554 44445554 555555533444444
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=2e-15 Score=154.75 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=35.9
Q ss_pred ccccEEEEeecCCCCcccccccC-CCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccccc
Q 039821 413 RSLHCVTIHICQKLKDTTFLVFA-PNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWK 491 (555)
Q Consensus 413 ~~L~~L~l~~~~~l~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 491 (555)
++|+.|++++| .++.++ .+ ++|++|++++|.. ..++. .+++|+.|+++++ .++.+|.
T Consensus 297 ~~L~~L~l~~N-~l~~i~---~~~~~L~~L~Ls~N~l-~~lp~---------------~~~~L~~L~L~~N-~l~~lp~- 354 (454)
T 1jl5_A 297 PNLYYLNASSN-EIRSLC---DLPPSLEELNVSNNKL-IELPA---------------LPPRLERLIASFN-HLAEVPE- 354 (454)
T ss_dssp TTCCEEECCSS-CCSEEC---CCCTTCCEEECCSSCC-SCCCC---------------CCTTCCEEECCSS-CCSCCCC-
T ss_pred CcCCEEECcCC-cCCccc---CCcCcCCEEECCCCcc-ccccc---------------cCCcCCEEECCCC-ccccccc-
Confidence 45666666655 222222 22 4666666666532 22211 1356666666664 4555554
Q ss_pred ccCCCCcceEEEcCC
Q 039821 492 PLPFTHLKEMVVRGC 506 (555)
Q Consensus 492 ~~~~~~L~~L~l~~C 506 (555)
.+++|+.|+++++
T Consensus 355 --~l~~L~~L~L~~N 367 (454)
T 1jl5_A 355 --LPQNLKQLHVEYN 367 (454)
T ss_dssp --CCTTCCEEECCSS
T ss_pred --hhhhccEEECCCC
Confidence 3566666666664
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=2.3e-16 Score=150.66 Aligned_cols=175 Identities=21% Similarity=0.271 Sum_probs=91.7
Q ss_pred cCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-Hhhhhc
Q 039821 237 KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGS 315 (555)
Q Consensus 237 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~ 315 (555)
..+.+++.|.+.++.+..++....+++|++|+++++. +..++ .+..+++|++|++++| . +..+|.. +..+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~- 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGN-Q---LQSLPNGVFDKLT- 109 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTS-C---CCCCCTTTTTTCT-
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCC-c---cCccChhHhcCCc-
Confidence 3445666666666666666555666666666666443 33333 2556666666666666 3 4444433 34554
Q ss_pred cccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccce
Q 039821 316 SLELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELEL 394 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~ 394 (555)
+|++|++++|.+..+|.. ++.+++|++|++++| .+..+|.. .++.+++|+.|+++++ .++.
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----------------~~~~l~~L~~L~l~~n-~l~~ 171 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG----------------VFDKLTNLTELDLSYN-QLQS 171 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHH----------------HhccCccCCEEECCCC-CcCc
Confidence 666666666666666553 456666666666666 44555543 2345555555555554 2222
Q ss_pred eeecccccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecC
Q 039821 395 LKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHC 446 (555)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~ 446 (555)
++... ...+++|+.|++++|.....++ .+..+++|++|++++|
T Consensus 172 ~~~~~---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 172 LPEGV---------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCTTT---------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCHHH---------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 22111 1145555555555552222222 2445555555555555
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=5.1e-16 Score=148.22 Aligned_cols=221 Identities=17% Similarity=0.241 Sum_probs=163.8
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcC
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDIS 323 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~ 323 (555)
.+.+....+........+++|+.|.+.++. +..++. +..+++|++|++++| . +..+ +.+..+. +|++|+++
T Consensus 23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~--l~~l~~L~~L~l~~n-~---l~~~-~~l~~l~-~L~~L~L~ 93 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQG--IQYLPNVRYLALGGN-K---LHDI-SALKELT-NLTYLILT 93 (272)
T ss_dssp HHHHTCSCTTSEECHHHHTTCCEEECTTSC-CCCCTT--GGGCTTCCEEECTTS-C---CCCC-GGGTTCT-TCCEEECT
T ss_pred HHHhcCcccccccccccccceeeeeeCCCC-cccccc--cccCCCCcEEECCCC-C---CCCc-hhhcCCC-CCCEEECC
Confidence 344444445555555778899999999654 555554 788999999999999 4 5555 4788887 99999999
Q ss_pred CCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccccc
Q 039821 324 HTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEI 402 (555)
Q Consensus 324 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 402 (555)
+|.+..+|.. ++.+++|++|++++| .+..+|.. .++.+++|++|+++++ .++.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----------------~~~~l~~L~~L~L~~n-~l~~~~~~~--- 152 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDG----------------VFDKLTNLTYLNLAHN-QLQSLPKGV--- 152 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCCCCTTT---
T ss_pred CCccCccChhHhcCCcCCCEEECCCC-cCCccCHH----------------HhccCCCCCEEECCCC-ccCccCHHH---
Confidence 9999998874 688999999999999 57777764 3677889999999887 444443322
Q ss_pred ccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecC
Q 039821 403 VRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLS 480 (555)
Q Consensus 403 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 480 (555)
...+++|+.|++++| .++.++ .++.+++|++|++++|...+ +++ ..++.+++|+.|+++
T Consensus 153 ------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-----------~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 153 ------FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD-----------GVFDRLTSLQYIWLH 213 (272)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT-----------TTTTTCTTCCEEECC
T ss_pred ------hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc-cCH-----------HHHhCCcCCCEEEcc
Confidence 126899999999999 455544 36889999999999985432 322 246788999999999
Q ss_pred cccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc
Q 039821 481 HLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK 520 (555)
Q Consensus 481 ~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~ 520 (555)
+++-. +.++.|+.|++..+.--..+|.....+.
T Consensus 214 ~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 214 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 87422 3467788888877766667777666543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.4e-15 Score=145.02 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=119.3
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH-hhhhccccE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM-SELGSSLEL 319 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~-~~l~~~L~~ 319 (555)
..+.+++.++.+..+|... .++++.|+++++. +..++...|..+++|++|++++| . +..+|..+ ..+. +|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~---l~~i~~~~~~~l~-~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-K---LQTLPAGIFKELK-NLET 89 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-C---CSCCCTTTTSSCT-TCCE
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-c---cCeeChhhhcCCC-CCCE
Confidence 3456666666666655421 2567777777543 66666656777788888888777 4 56666554 4565 7888
Q ss_pred EEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeec
Q 039821 320 LDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKID 398 (555)
Q Consensus 320 L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 398 (555)
|++++|.+..+|. .+..+++|++|++++| .+..+|.. .|+.+++|++|+++++ .++.++..
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----------------~~~~l~~L~~L~Ls~n-~l~~~~~~ 151 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPR----------------VFDSLTKLTYLSLGYN-ELQSLPKG 151 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHH----------------HhCcCcCCCEEECCCC-cCCccCHh
Confidence 8888887777765 3567777888888777 45666653 3456667777776665 23322221
Q ss_pred ccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccce
Q 039821 399 YTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRL 476 (555)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 476 (555)
. ...+++|+.|++++| .++.++ .+..+++|++|++++|. ++.++. ..+..+++|+.
T Consensus 152 ~---------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~ 209 (270)
T 2o6q_A 152 V---------FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE-----------GAFDSLEKLKM 209 (270)
T ss_dssp T---------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCE
T ss_pred H---------ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCH-----------HHhccccCCCE
Confidence 1 125667777777766 333333 35566777777777663 222222 13455666777
Q ss_pred eecCcc
Q 039821 477 LRLSHL 482 (555)
Q Consensus 477 L~l~~~ 482 (555)
|+++++
T Consensus 210 L~l~~N 215 (270)
T 2o6q_A 210 LQLQEN 215 (270)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 777654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.3e-15 Score=146.48 Aligned_cols=195 Identities=20% Similarity=0.152 Sum_probs=130.7
Q ss_pred ccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcccc
Q 039821 239 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLE 318 (555)
Q Consensus 239 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~ 318 (555)
..+++.+++.++.+..++... .++++.|+++++. +..+++..|..+++|++|++++| . +..++.. +.+. +|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~-~~l~-~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-E---LTKLQVD-GTLP-VLG 80 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-C---CCEEECC-SCCT-TCC
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-c---cCcccCC-CCCC-cCC
Confidence 456777788777777765432 3678888888554 66666666788888888888888 5 5556544 5665 888
Q ss_pred EEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeec
Q 039821 319 LLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKID 398 (555)
Q Consensus 319 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 398 (555)
+|++++|.+..+|..+..+++|++|++++| .+..+|++ .|..+++|++|+++++ .++.++..
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~----------------~~~~l~~L~~L~L~~N-~l~~~~~~ 142 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG----------------ALRGLGELQELYLKGN-ELKTLPPG 142 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS----------------TTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHH----------------HHcCCCCCCEEECCCC-CCCccChh
Confidence 888888888888887888888888888888 56777654 3566777777777766 33333222
Q ss_pred ccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccce
Q 039821 399 YTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRL 476 (555)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 476 (555)
. ...+++|+.|++++| .++.++ .+..+++|++|++++|.. +.++. .+..+++|+.
T Consensus 143 ~---------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~------------~~~~~~~L~~ 199 (290)
T 1p9a_G 143 L---------LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL-YTIPK------------GFFGSHLLPF 199 (290)
T ss_dssp T---------TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCC-CCCCT------------TTTTTCCCSE
T ss_pred h---------cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcC-CccCh------------hhcccccCCe
Confidence 1 125677777777777 444444 346677777777777632 23322 4445567777
Q ss_pred eecCcc
Q 039821 477 LRLSHL 482 (555)
Q Consensus 477 L~l~~~ 482 (555)
|+++++
T Consensus 200 l~L~~N 205 (290)
T 1p9a_G 200 AFLHGN 205 (290)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 777753
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=4.3e-15 Score=157.16 Aligned_cols=231 Identities=19% Similarity=0.154 Sum_probs=171.8
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
..+...+..+..++. ...+++.|++++|.+..++. .+++|++|++++|. +..++. .+++|+.|++++| .
T Consensus 64 ~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~----~l~~L~~L~L~~N-~- 132 (622)
T 3g06_A 64 TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP-LTHLPA----LPSGLCKLWIFGN-Q- 132 (622)
T ss_dssp SEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCC-CCCCCC----CCTTCCEEECCSS-C-
T ss_pred cEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCc-CCCCCC----CCCCcCEEECCCC-C-
Confidence 445555556666665 56899999999999988876 78999999999654 666665 5788999999999 6
Q ss_pred ccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccC-CCc
Q 039821 301 WSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFA-DLN 379 (555)
Q Consensus 301 ~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~-~l~ 379 (555)
+..+|..+ . +|++|++++|.+..+|.. +.+|+.|++++| .+..+|.. ..+|..|.++...+..+. .++
T Consensus 133 --l~~lp~~l---~-~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~-~~~L~~L~Ls~N~l~~l~~~~~ 201 (622)
T 3g06_A 133 --LTSLPVLP---P-GLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPML-PSGLQELSVSDNQLASLPTLPS 201 (622)
T ss_dssp --CSCCCCCC---T-TCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC-CTTCCEEECCSSCCSCCCCCCT
T ss_pred --CCcCCCCC---C-CCCEEECcCCcCCCcCCc---cCCCCEEECCCC-CCCCCccc-CCCCcEEECCCCCCCCCCCccc
Confidence 77787653 4 999999999999998863 578889999988 67788843 555555555555555443 356
Q ss_pred cccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCccc
Q 039821 380 HLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFA 459 (555)
Q Consensus 380 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 459 (555)
+|+.|.++++ .++.++. .+++|+.|++++| .++.++ ..+++|++|++++|. +..++
T Consensus 202 ~L~~L~L~~N-~l~~l~~-------------~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp------ 257 (622)
T 3g06_A 202 ELYKLWAYNN-RLTSLPA-------------LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP------ 257 (622)
T ss_dssp TCCEEECCSS-CCSSCCC-------------CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC------
T ss_pred hhhEEECcCC-cccccCC-------------CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC------
Confidence 7788877766 2332221 3578999999988 566666 567899999999883 33221
Q ss_pred ccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCC
Q 039821 460 EVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCD 507 (555)
Q Consensus 460 ~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~ 507 (555)
. .+++|+.|++++| ++..+|.....+++|+.|++++++
T Consensus 258 ------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 ------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 1 4678999999985 777888878888999999998875
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2.9e-16 Score=153.17 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=99.9
Q ss_pred CCCcceEEEcccCcchhccchhHh-ccCCcccEEEecCCCCCccccccChhHhhh-----hccccEEEcCCCCCcccc-h
Q 039821 260 TCPHLLTLFLDFNEDVEMIADGFF-QFMPSLKVLKMSNCGKSWSNFQLPVGMSEL-----GSSLELLDISHTSIRELP-E 332 (555)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l-----~~~L~~L~l~~~~i~~lp-~ 332 (555)
.+++|++|+++++.....+|..++ ..+++|++|++++| . +...|..++.+ . +|++|++++|.+..++ .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~---l~~~~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-S---WATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-B---CSSSSSHHHHHHTTCCT-TCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-C---CcchhHHHHHHHHhhcC-CCcEEEeeCCCCccchHH
Confidence 456666666665542223444322 56666666666666 3 44446666655 4 6666666666666665 3
Q ss_pred hhhCCCCCcEEccCCCccccc--cchHHHhccccccccccCccccCCCccccccccccccccceeeeccccccccccccc
Q 039821 333 ELKKLVNLKCLNLRRTELLNK--IPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPF 410 (555)
Q Consensus 333 ~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 410 (555)
.++.+++|++|++++|..... +|.. + .++.+++|++|+++++. ++.++.... ....
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~--------------~~~~l~~L~~L~L~~N~-l~~~~~~~~------~~~~ 225 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISA-L--------------CPLKFPTLQVLALRNAG-METPSGVCS------ALAA 225 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHH-S--------------CTTSCTTCCEEECTTSC-CCCHHHHHH------HHHH
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHH-H--------------HhccCCCCCEEECCCCc-CcchHHHHH------HHHh
Confidence 566666666666666642222 1211 0 12455666666665552 221110000 0001
Q ss_pred ccccccEEEEeecCCCCcc--cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc
Q 039821 411 VFRSLHCVTIHICQKLKDT--TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI 488 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l 488 (555)
.+++|+.|++++|.....+ +.+..+++|++|++++|.. +.++. .+. ++|++|+++++ .++.+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~------------~~~--~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPK------------GLP--AKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCS------------SCC--SEEEEEECCSS-CCCSC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhh------------hcc--CCceEEECCCC-CCCCC
Confidence 3456666666655322222 2334455666666665532 12221 222 55666666553 44544
Q ss_pred cccccCCCCcceEEEcC
Q 039821 489 YWKPLPFTHLKEMVVRG 505 (555)
Q Consensus 489 ~~~~~~~~~L~~L~l~~ 505 (555)
|. ...+++|+.|++++
T Consensus 290 p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CC-TTTSCEEEEEECTT
T ss_pred hh-HhhCCCCCEEeccC
Confidence 43 44455555555554
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=2.8e-16 Score=153.23 Aligned_cols=240 Identities=16% Similarity=0.132 Sum_probs=169.6
Q ss_pred cceeEeeccccccccccC-CCCCCcceEEEcccCcchh--ccchhH------hccCCcccEEEecCCCCCccccccChhH
Q 039821 240 ENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNEDVE--MIADGF------FQFMPSLKVLKMSNCGKSWSNFQLPVGM 310 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~--~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~lp~~~ 310 (555)
.+++.+.+.++.+ .++. ... .|+.|++.++. +. .++... +..+++|++|++++|.. ...+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~ 115 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEV---TGTAPPPL 115 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC---BSCCCCCS
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc---cchhHHHH
Confidence 3455666666666 3332 121 27777777554 32 233321 12689999999999943 34677776
Q ss_pred --hhhhccccEEEcCCCCCcccchhhhCC-----CCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccc
Q 039821 311 --SELGSSLELLDISHTSIRELPEELKKL-----VNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNE 383 (555)
Q Consensus 311 --~~l~~~L~~L~l~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~ 383 (555)
..+. +|++|++++|.+..+|..++.+ ++|++|++++| .+..+++. .++.+++|++
T Consensus 116 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~ 177 (312)
T 1wwl_A 116 LEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE----------------QVRVFPALST 177 (312)
T ss_dssp SSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT----------------TCCCCSSCCE
T ss_pred HHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH----------------HhccCCCCCE
Confidence 7777 9999999999999888888877 89999999999 56777753 4788999999
Q ss_pred cccccccccceee--ecccccccccccccccccccEEEEeecCCCCccc-----ccccCCCCceEEeecCCcchhhhccC
Q 039821 384 LWIDRAKELELLK--IDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-----FLVFAPNLKSLSLFHCGAMEEIISVG 456 (555)
Q Consensus 384 L~l~~~~~l~~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~ 456 (555)
|+++++.-....+ .... ...+++|++|++++| .++.++ .+..+++|++|++++|......+.
T Consensus 178 L~Ls~N~l~~~~~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 246 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALC--------PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-- 246 (312)
T ss_dssp EECCSCTTCHHHHHHHHSC--------TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--
T ss_pred EECCCCCcCcchHHHHHHH--------hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--
Confidence 9999886332211 1110 127899999999999 455332 235779999999999964332211
Q ss_pred cccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 457 KFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 457 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
..+..+++|++|+++++ .++.+|.... ++|+.|+++++ +++.+|. ...++ |+.++++++
T Consensus 247 ---------~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 247 ---------PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ---------SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred ---------hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 13456789999999995 6778876554 89999999986 7888887 55555 889888765
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=4.9e-15 Score=141.78 Aligned_cols=102 Identities=26% Similarity=0.330 Sum_probs=45.3
Q ss_pred ceeEeecccccccccc--CCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhccc
Q 039821 241 NVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSL 317 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L 317 (555)
+++.|++.++.+..++ .+..+++|++|+++++ .+..++...|..+++|++|++++| . +..++ ..+..+. +|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-P---IQSLALGAFSGLS-SL 102 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C---CCEECTTTTTTCT-TC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-c---cCccChhhhcCCc-cc
Confidence 4455555554444433 2244444555555433 233343333444444555555444 2 22222 3344443 45
Q ss_pred cEEEcCCCCCcccch-hhhCCCCCcEEccCCC
Q 039821 318 ELLDISHTSIRELPE-ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 348 (555)
++|++++|.+..++. .++.+++|++|++++|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 555554444444433 3444444455554444
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=4.8e-15 Score=141.82 Aligned_cols=197 Identities=20% Similarity=0.162 Sum_probs=137.7
Q ss_pred CcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEcCCCCCcccch-hhhCCCC
Q 039821 262 PHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISHTSIRELPE-ELKKLVN 339 (555)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~ 339 (555)
++|++|+++++. +..++...|.++++|++|++++| . +..++. .+..+. +|++|++++|.+..++. .+..+++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-E---IQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-C---CCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-c---CCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCcc
Confidence 579999998654 77777766888999999999999 5 556654 677777 99999999999988874 6888999
Q ss_pred CcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEE
Q 039821 340 LKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVT 419 (555)
Q Consensus 340 L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 419 (555)
|++|++++| .+..++.. .++.+++|++|+++++. ++.+. .+.....+++|+.|+
T Consensus 102 L~~L~l~~n-~l~~~~~~----------------~~~~l~~L~~L~l~~n~-l~~~~--------l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 102 LQKLVAVET-NLASLENF----------------PIGHLKTLKELNVAHNL-IQSFK--------LPEYFSNLTNLEHLD 155 (276)
T ss_dssp CCEEECTTS-CCCCSTTC----------------CCTTCTTCCEEECCSSC-CCCCC--------CCGGGGGCTTCCEEE
T ss_pred ccEEECCCC-CccccCch----------------hcccCCCCCEEECcCCc-cceec--------CchhhccCCCCCEEE
Confidence 999999998 56666652 35677888888887763 22211 112223678888888
Q ss_pred EeecCCCCccc--ccccCCCCc----eEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccccc-c
Q 039821 420 IHICQKLKDTT--FLVFAPNLK----SLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWK-P 492 (555)
Q Consensus 420 l~~~~~l~~~~--~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~ 492 (555)
+++|. ++.++ .+..+++|+ +|++++|.. ..++. ......+|+.|+++++ .++.++.. .
T Consensus 156 Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~------------~~~~~~~L~~L~L~~n-~l~~~~~~~~ 220 (276)
T 2z62_A 156 LSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP------------GAFKEIRLKELALDTN-QLKSVPDGIF 220 (276)
T ss_dssp CCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECT------------TSSCSCCEEEEECCSS-CCSCCCTTTT
T ss_pred CCCCC-CCcCCHHHhhhhhhccccceeeecCCCcc-cccCc------------cccCCCcccEEECCCC-ceeecCHhHh
Confidence 88884 43332 455555555 788887743 22222 2223447888888885 57776654 3
Q ss_pred cCCCCcceEEEcC
Q 039821 493 LPFTHLKEMVVRG 505 (555)
Q Consensus 493 ~~~~~L~~L~l~~ 505 (555)
..+++|+.|++++
T Consensus 221 ~~l~~L~~L~l~~ 233 (276)
T 2z62_A 221 DRLTSLQKIWLHT 233 (276)
T ss_dssp TTCCSCCEEECCS
T ss_pred cccccccEEEccC
Confidence 5678888888874
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=2.9e-15 Score=148.55 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=144.3
Q ss_pred EEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEE-EecCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVL-KMSNCG 298 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~ 298 (555)
.+.+.+..+..+|... ..+++.|.++++.+..++. +.++++|++|++++|...+.++..+|.++++|+.+ .+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N- 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence 3455555666665422 3567777777777777664 36777777777776654555666667777666543 44444
Q ss_pred CCccccccC-hhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccC
Q 039821 299 KSWSNFQLP-VGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFA 376 (555)
Q Consensus 299 ~~~~~~~lp-~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~ 376 (555)
. +..+| ..+..+. +|++|++++|++..+|. ......++..|++.++..+..+|.. .|.
T Consensus 91 ~---l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~----------------~f~ 150 (350)
T 4ay9_X 91 N---LLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----------------SFV 150 (350)
T ss_dssp T---CCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----------------SST
T ss_pred c---ccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhcccccccccccc----------------chh
Confidence 4 55554 3445565 77777777777777765 3444556667777665566666653 233
Q ss_pred CC-ccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhh
Q 039821 377 DL-NHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEII 453 (555)
Q Consensus 377 ~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~ 453 (555)
.+ ..++.|+++++ .++.++... +...+|+.|.+.++..++.++ .+..+++|++|++++|. ++.++
T Consensus 151 ~~~~~l~~L~L~~N-~i~~i~~~~----------f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 151 GLSFESVILWLNKN-GIQEIHNSA----------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp TSBSSCEEEECCSS-CCCEECTTS----------STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred hcchhhhhhccccc-cccCCChhh----------ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC
Confidence 33 24555666554 333333222 255677777777666676665 35677888888887773 33332
Q ss_pred ccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcC
Q 039821 454 SVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRG 505 (555)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~ 505 (555)
. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 219 ~--------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 S--------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp S--------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred h--------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 2 3456677777777777777773 45677777777643
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.4e-15 Score=149.14 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=176.5
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-Hhhhhcccc-EEE
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSLE-LLD 321 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L~-~L~ 321 (555)
.+...++.+..+|..- .+++++|+++++ .+..++..+|.++++|++|++++|.. ...+|.. +..+. +|+ .+.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~~f~~L~-~l~~~l~ 86 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLP-KLHEIRI 86 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTT---CCEECTTSBCSCT-TCCEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCC---CCccChhHhhcch-hhhhhhc
Confidence 4556666677666432 468999999965 48889988899999999999999944 3556543 45666 665 466
Q ss_pred cCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccc
Q 039821 322 ISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYT 400 (555)
Q Consensus 322 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 400 (555)
+.++++..+|. .+..+++|++|++++| .+..+|.. .+....++..|.+.++..+..++....
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~----------------~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDV----------------HKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCC----------------TTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred ccCCcccccCchhhhhcccccccccccc-ccccCCch----------------hhcccchhhhhhhccccccccccccch
Confidence 67789999965 6789999999999999 57777753 233455666777777666666654322
Q ss_pred ccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeec
Q 039821 401 EIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRL 479 (555)
Q Consensus 401 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 479 (555)
.. ....++.|++++| .++.++ .....++|++|.+.+++.++.++. ..+..+++|+.|++
T Consensus 150 ~~--------~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-----------~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 150 VG--------LSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN-----------DVFHGASGPVILDI 209 (350)
T ss_dssp TT--------SBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT-----------TTTTTEECCSEEEC
T ss_pred hh--------cchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH-----------HHhccCcccchhhc
Confidence 10 2356889999988 555544 445667899999999888887765 25688999999999
Q ss_pred CcccccccccccccCCCCcceEEEcCCCCCCccCCCCCcccccceEEe
Q 039821 480 SHLPNLKSIYWKPLPFTHLKEMVVRGCDQLEKLPLDSNSAKERKFVIR 527 (555)
Q Consensus 480 ~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~L~~l~i~ 527 (555)
+++ .++.+|. ..+.+|+.|.+.+|.+++.+|....-..|+.+++.
T Consensus 210 s~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 210 SRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred CCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 995 7998875 35899999999999999999964333338888886
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=5.2e-15 Score=142.39 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=133.2
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcCCCCCcccchhhhCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDISHTSIRELPEELKKL 337 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L 337 (555)
.++++++++++.++ .+..+|... .+++++|++++| . +..+ |..+..+. +|++|++++|.+..+|.. +.+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~N-~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDL---PKDTTILHLSEN-L---LYTFSLATLMPYT-RLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCC---CTTCCEEECTTS-C---CSEEEGGGGTTCT-TCCEEECTTSCCCEEECC-SCC
T ss_pred cccCCccEEECCCC-CCCcCCCCC---CCCCCEEEcCCC-c---CCccCHHHhhcCC-CCCEEECCCCccCcccCC-CCC
Confidence 55677888888744 466676542 367888888888 4 4444 45677776 888888888888888764 678
Q ss_pred CCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccE
Q 039821 338 VNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHC 417 (555)
Q Consensus 338 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 417 (555)
++|++|++++| .+..+|. .+..+++|+.|+++++ .++.++... ...+++|+.
T Consensus 77 ~~L~~L~Ls~N-~l~~l~~-----------------~~~~l~~L~~L~l~~N-~l~~l~~~~---------~~~l~~L~~ 128 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSLPL-----------------LGQTLPALTVLDVSFN-RLTSLPLGA---------LRGLGELQE 128 (290)
T ss_dssp TTCCEEECCSS-CCSSCCC-----------------CTTTCTTCCEEECCSS-CCCCCCSST---------TTTCTTCCE
T ss_pred CcCCEEECCCC-cCCcCch-----------------hhccCCCCCEEECCCC-cCcccCHHH---------HcCCCCCCE
Confidence 88888888888 5667775 2466777788877776 333333221 226778888
Q ss_pred EEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCC
Q 039821 418 VTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPF 495 (555)
Q Consensus 418 L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~ 495 (555)
|++++| .++.++ .+..+++|+.|++++|. ++.++. ..+..+++|+.|++++ ..++.+|......
T Consensus 129 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-----------~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 129 LYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-----------GLLNGLENLDTLLLQE-NSLYTIPKGFFGS 194 (290)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-----------TTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred EECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCH-----------HHhcCcCCCCEEECCC-CcCCccChhhccc
Confidence 888887 444443 35677888888888774 333322 1346677888888887 4677777776677
Q ss_pred CCcceEEEcCC
Q 039821 496 THLKEMVVRGC 506 (555)
Q Consensus 496 ~~L~~L~l~~C 506 (555)
++|+.|++++.
T Consensus 195 ~~L~~l~L~~N 205 (290)
T 1p9a_G 195 HLLPFAFLHGN 205 (290)
T ss_dssp CCCSEEECCSC
T ss_pred ccCCeEEeCCC
Confidence 77888887754
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.1e-15 Score=156.04 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=161.3
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLV 338 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~ 338 (555)
..+++|++|+++++. +..+++..|..+++|++|++++| . +...++ ++.+. +|++|++++|.+..+|. .+
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~---l~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~----~~ 99 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-V---LYETLD-LESLS-TLRTLDLNNNYVQELLV----GP 99 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-C---CEEEEE-CTTCT-TCCEEECCSSEEEEEEE----CT
T ss_pred ccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-C---CCCCcc-cccCC-CCCEEEecCCcCCCCCC----CC
Confidence 456689999998654 66777666888999999999988 4 544444 77777 99999999998888775 38
Q ss_pred CCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEE
Q 039821 339 NLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCV 418 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 418 (555)
+|++|++++| .+..+|. ..+++|+.|+++++. +..+.. ..+..+++|+.|
T Consensus 100 ~L~~L~L~~N-~l~~~~~-------------------~~l~~L~~L~L~~N~-l~~~~~---------~~~~~l~~L~~L 149 (487)
T 3oja_A 100 SIETLHAANN-NISRVSC-------------------SRGQGKKNIYLANNK-ITMLRD---------LDEGCRSRVQYL 149 (487)
T ss_dssp TCCEEECCSS-CCCCEEE-------------------CCCSSCEEEECCSSC-CCSGGG---------BCGGGGSSEEEE
T ss_pred CcCEEECcCC-cCCCCCc-------------------cccCCCCEEECCCCC-CCCCCc---------hhhcCCCCCCEE
Confidence 8999999988 5666664 346788888888874 222211 122378999999
Q ss_pred EEeecCCCCcc-cccc-cCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCC
Q 039821 419 TIHICQKLKDT-TFLV-FAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFT 496 (555)
Q Consensus 419 ~l~~~~~l~~~-~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~ 496 (555)
++++|.....+ ..+. .+++|++|++++|... .++ ....+++|+.|+++++ .+..++.....++
T Consensus 150 ~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~ 214 (487)
T 3oja_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (487)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE-------------CCCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred ECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccc-------------ccccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence 99998443323 3444 7899999999999632 222 2446899999999995 7888877788899
Q ss_pred CcceEEEcCCCCCCccCCCCCccc-ccceEEech
Q 039821 497 HLKEMVVRGCDQLEKLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 497 ~L~~L~l~~C~~L~~lp~~~~~~~-L~~l~i~~~ 529 (555)
+|+.|+++++ ++..+|.....++ |+.++++++
T Consensus 215 ~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred CccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence 9999999995 6888998877666 999999875
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.5e-14 Score=137.86 Aligned_cols=192 Identities=23% Similarity=0.346 Sum_probs=152.0
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+..+..+|... ..+++.|++.++.+..++. +..+++|++|+++++. +..++...|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n- 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN- 95 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-
Confidence 34555666666666432 3689999999999988764 5889999999999654 77888888899999999999999
Q ss_pred CCccccccChh-HhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccC
Q 039821 299 KSWSNFQLPVG-MSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFA 376 (555)
Q Consensus 299 ~~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~ 376 (555)
. +..+|.. +..+. +|++|++++|.+..+|. .++.+++|++|++++| .+..+|.. .|+
T Consensus 96 ~---l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----------------~~~ 154 (270)
T 2o6q_A 96 K---LQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKG----------------VFD 154 (270)
T ss_dssp C---CCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------------TTT
T ss_pred c---CCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHh----------------Hcc
Confidence 5 6677654 46776 99999999999999987 5789999999999999 67888864 367
Q ss_pred CCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCC
Q 039821 377 DLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 377 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~ 447 (555)
.+++|++|+++++ .++.++... ...+++|+.|++++| .++.++ .+..+++|+.|++++|+
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~~~---------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPEGA---------FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTT---------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCC-cCcEeChhH---------hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 7889999999887 333333221 126899999999998 455544 47789999999999985
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=9.7e-16 Score=151.19 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=150.4
Q ss_pred cceeEeeccccccccc-cCCCCCCcceEEEcccCcchhcc-chhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 240 ENVRRLSLMQNQIETL-SEVPTCPHLLTLFLDFNEDVEMI-ADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
.+++.+.+.++.+... +....+++|++|+++++. +... .+..+..+++|++|++++|.. ....|..++.+. +|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~~l~~~~-~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNS-NL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBC---CHHHHHHHTTCT-TC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCccc---CHHHHHHHhcCC-CC
Confidence 3577777777766553 334678889999998765 4332 334478889999999998843 335677788877 99
Q ss_pred cEEEcCCC-CCcc--cchhhhCCCCCcEEccCCCccccc--cchHHHhccccccccccCccccCCCc-ccccccccccc-
Q 039821 318 ELLDISHT-SIRE--LPEELKKLVNLKCLNLRRTELLNK--IPRQLISNSSRDTTSVIDATAFADLN-HLNELWIDRAK- 390 (555)
Q Consensus 318 ~~L~l~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~L~~~~~~~l~~l~-~L~~L~l~~~~- 390 (555)
++|++++| .++. +|..+..+++|++|++++|..+.. ++.. +..++ +|++|++++|.
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----------------~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-----------------VAHVSETITQLNLSGYRK 207 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-----------------HHHSCTTCCEEECCSCGG
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-----------------HHhcccCCCEEEeCCCcc
Confidence 99999998 6773 677788899999999998844443 3432 35567 88888888874
Q ss_pred ccceeeecccccccccccccccccccEEEEeecCCCCc--ccccccCCCCceEEeecCCcchhhhccCcccccccccCCC
Q 039821 391 ELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD--TTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHI 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~ 468 (555)
.+..-. .+.....+++|+.|++++|..++. ++.+..+++|++|++++|..+... ....+
T Consensus 208 ~~~~~~--------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~l 268 (336)
T 2ast_B 208 NLQKSD--------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-----------TLLEL 268 (336)
T ss_dssp GSCHHH--------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-----------GGGGG
T ss_pred cCCHHH--------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-----------HHHHH
Confidence 232110 111112688999999999865443 557788899999999998632211 01135
Q ss_pred CCCcccceeecCcccccccccccccCC-CCcceEEEcCCCCCCccC
Q 039821 469 SPFENLRLLRLSHLPNLKSIYWKPLPF-THLKEMVVRGCDQLEKLP 513 (555)
Q Consensus 469 ~~~~~L~~L~l~~~~~L~~l~~~~~~~-~~L~~L~l~~C~~L~~lp 513 (555)
+.+++|+.|++++| +..- ....+ ..|+.|+++ |.+++...
T Consensus 269 ~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 269 GEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp GGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEES-CCCSCCTT
T ss_pred hcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEe-cccCcccc
Confidence 66889999999987 2211 11122 235566664 55666543
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=1.2e-15 Score=150.49 Aligned_cols=239 Identities=15% Similarity=0.116 Sum_probs=165.1
Q ss_pred ceeEeeccccccccccCCCCC--CcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccc--ccChhHhhhhcc
Q 039821 241 NVRRLSLMQNQIETLSEVPTC--PHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNF--QLPVGMSELGSS 316 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~lp~~~~~l~~~ 316 (555)
..+++++.++.+.. .....+ ++++.|++.++. +...+.. +..+++|++|++++| . +. .+|..+..++ +
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~-~---l~~~~~~~~~~~~~-~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNS-V---IEVSTLHGILSQCS-K 119 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTC-E---ECHHHHHHHHTTBC-C
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCcc-ccccchh-hccCCCCCEEEccCC-C---cCHHHHHHHHhhCC-C
Confidence 46677777765542 112333 788999998654 4444444 456899999999998 3 33 2777788887 9
Q ss_pred ccEEEcCCCCCc-ccchhhhCCCCCcEEccCCCccccc--cchHHHhccccccccccCccccCCCccccccccccccccc
Q 039821 317 LELLDISHTSIR-ELPEELKKLVNLKCLNLRRTELLNK--IPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELE 393 (555)
Q Consensus 317 L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~ 393 (555)
|++|++++|.+. ..|..++.+++|++|++++|..+.. +|.. +..+++|++|++++|..++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-----------------~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-----------------LSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-----------------HHHCTTCCEEECCCCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-----------------HhcCCCCCEEcCCCCCCcC
Confidence 999999999887 4677888899999999999954552 4432 3567889999999885554
Q ss_pred eeeecccccccccccccccc-cccEEEEeecC-CCCc--c-cccccCCCCceEEeecCCcch-hhhccCcccccccccCC
Q 039821 394 LLKIDYTEIVRKRREPFVFR-SLHCVTIHICQ-KLKD--T-TFLVFAPNLKSLSLFHCGAME-EIISVGKFAEVPEMMGH 467 (555)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~--~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~l~~~~~~ 467 (555)
.... +.....++ +|++|++++|. .++. + ..+..+++|++|++++|..++ ..+. .
T Consensus 183 ~~~~--------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------~ 242 (336)
T 2ast_B 183 EKHV--------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------E 242 (336)
T ss_dssp HHHH--------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------G
T ss_pred hHHH--------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------H
Confidence 3211 11112688 99999999995 3432 2 356789999999999997443 3322 4
Q ss_pred CCCCcccceeecCccccccccc-ccccCCCCcceEEEcCCCCCCccCCCC-Ccc-c-ccceEEech
Q 039821 468 ISPFENLRLLRLSHLPNLKSIY-WKPLPFTHLKEMVVRGCDQLEKLPLDS-NSA-K-ERKFVIRGE 529 (555)
Q Consensus 468 ~~~~~~L~~L~l~~~~~L~~l~-~~~~~~~~L~~L~l~~C~~L~~lp~~~-~~~-~-L~~l~i~~~ 529 (555)
+..+++|+.|++++|..+.... .....+++|+.|++++| ++... ..+ . +..+++.++
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc
Confidence 5678999999999987443221 13456899999999999 44432 222 2 666666543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.4e-14 Score=139.54 Aligned_cols=168 Identities=20% Similarity=0.277 Sum_probs=100.1
Q ss_pred CccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 238 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
...+++.|++.++.+..++....+++|++|+++++. +..+++ +..+++|++|++++| . +..+| .+..+. +|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n-~---l~~~~-~l~~l~-~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDEN-K---VKDLS-SLKDLK-KL 114 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-C---CCCGG-GGTTCT-TC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCC-c---CCCCh-hhccCC-CC
Confidence 345667777777766666666666777777776443 445544 566677777777766 3 44443 366665 77
Q ss_pred cEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeee
Q 039821 318 ELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKI 397 (555)
Q Consensus 318 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 397 (555)
++|++++|.+..++ .+..+++|++|++++| .+..++. +..+++|+.|+++++. +..++.
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~------------------l~~l~~L~~L~L~~N~-l~~~~~ 173 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV------------------LSRLTKLDTLSLEDNQ-ISDIVP 173 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG------------------GGGCTTCSEEECCSSC-CCCCGG
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh------------------hccCCCCCEEEccCCc-cccchh
Confidence 77777777666664 4666677777777766 3444432 3455566666665552 222211
Q ss_pred cccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCC
Q 039821 398 DYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~ 447 (555)
...+++|+.|++++| .++.++.+..+++|+.|++++|+
T Consensus 174 -----------l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 -----------LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----------GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -----------hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 115666666666666 44555556666666666666653
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.6e-14 Score=139.05 Aligned_cols=180 Identities=17% Similarity=0.275 Sum_probs=128.0
Q ss_pred ccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCC
Q 039821 247 LMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTS 326 (555)
Q Consensus 247 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~ 326 (555)
+....+..+.....+++|+.|++.++. +..++. +..+++|++|++++| . +..++. +..+. +|++|++++|.
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~--~~~l~~L~~L~L~~n-~---l~~~~~-l~~l~-~L~~L~l~~n~ 101 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN-K---LTDIKP-LANLK-NLGWLFLDENK 101 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSS-C---CCCCGG-GTTCT-TCCEEECCSSC
T ss_pred hcCCCcccccchhhcCcccEEEccCCC-cccChh--HhcCCCCCEEEccCC-c---cCCCcc-cccCC-CCCEEECCCCc
Confidence 333444444445567888889888654 666643 778889999999988 5 666665 77787 89999999998
Q ss_pred CcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccccccccc
Q 039821 327 IRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKR 406 (555)
Q Consensus 327 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 406 (555)
+..+|. +..+++|++|++++| .+..++. +..+++|+.|+++++. ++.++
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n-~i~~~~~------------------l~~l~~L~~L~l~~n~-l~~~~---------- 150 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHN-GISDING------------------LVHLPQLESLYLGNNK-ITDIT---------- 150 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTS-CCCCCGG------------------GGGCTTCCEEECCSSC-CCCCG----------
T ss_pred CCCChh-hccCCCCCEEECCCC-cCCCChh------------------hcCCCCCCEEEccCCc-CCcch----------
Confidence 888775 888899999999888 5666653 4567778888887763 33221
Q ss_pred ccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcc
Q 039821 407 REPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHL 482 (555)
Q Consensus 407 ~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 482 (555)
....+++|+.|++++| .++.++.+..+++|++|++++|.. +.++ .+..+++|+.|+++++
T Consensus 151 -~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~i-~~l~-------------~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 151 -VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDLR-------------ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBCG-------------GGTTCTTCSEEEEEEE
T ss_pred -hhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCcC-CCCh-------------hhccCCCCCEEECcCC
Confidence 1226788888888888 555555588888888888888742 2221 3566788888888875
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=1.4e-14 Score=153.08 Aligned_cols=173 Identities=19% Similarity=0.273 Sum_probs=121.6
Q ss_pred CccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhh
Q 039821 235 DVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELG 314 (555)
Q Consensus 235 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~ 314 (555)
....+.+++.|.+.++.+..++.+..+++|+.|++++|. +..+++ +..+++|+.|+|++| . +..+| .+..+.
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~---l~~l~-~l~~l~ 109 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDEN-K---IKDLS-SLKDLK 109 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSS-C---CCCCT-TSTTCT
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCC-C---CCCCh-hhccCC
Confidence 344556778888888877777777778888888887554 555555 677888888888887 4 55554 567776
Q ss_pred ccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccce
Q 039821 315 SSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELEL 394 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~ 394 (555)
+|++|+|++|.+..+| .+..+++|+.|+|++| .+..++. +..+++|+.|+|++|. +..
T Consensus 110 -~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~------------------l~~l~~L~~L~Ls~N~-l~~ 167 (605)
T 1m9s_A 110 -KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV------------------LSRLTKLDTLSLEDNQ-ISD 167 (605)
T ss_dssp -TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG------------------GGSCTTCSEEECCSSC-CCC
T ss_pred -CCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh------------------hcccCCCCEEECcCCc-CCC
Confidence 8888888888887765 4777888888888887 4555532 4667777777777763 322
Q ss_pred eeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcc
Q 039821 395 LKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAM 449 (555)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~ 449 (555)
+.. +..+++|+.|+|++| .++.++.+..+++|+.|+|++|+..
T Consensus 168 ~~~-----------l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP-----------LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG-----------GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred chh-----------hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence 211 126788888888887 5666677778888888888887543
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.5e-14 Score=149.97 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=134.3
Q ss_pred eeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCC
Q 039821 245 LSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISH 324 (555)
Q Consensus 245 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~ 324 (555)
+.+....+..+.....+++|+.|++.++. +..++. +..+++|+.|+|++| . +..+|+ +..+. +|++|+|++
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N-~---l~~~~~-l~~l~-~L~~L~Ls~ 96 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN-K---LTDIKP-LTNLK-NLGWLFLDE 96 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTS-C---CCCCGG-GGGCT-TCCEEECCS
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCC-C---CCCChh-hccCC-CCCEEECcC
Confidence 34444444555555677888888888554 666653 788999999999988 5 666665 77887 999999999
Q ss_pred CCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccccccc
Q 039821 325 TSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVR 404 (555)
Q Consensus 325 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 404 (555)
|.+..+| .+..+++|++|+|++| .+..+|. +..+++|+.|+|++|. +..++
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~------------------l~~l~~L~~L~Ls~N~-l~~l~-------- 147 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHN-GISDING------------------LVHLPQLESLYLGNNK-ITDIT-------- 147 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG------------------GGGCTTCSEEECCSSC-CCCCG--------
T ss_pred CCCCCCh-hhccCCCCCEEEecCC-CCCCCcc------------------ccCCCccCEEECCCCc-cCCch--------
Confidence 9998877 5888999999999998 5666653 4667888888888773 33321
Q ss_pred ccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccc
Q 039821 405 KRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLP 483 (555)
Q Consensus 405 ~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 483 (555)
.+..+++|+.|+|++| .+..++.+..+++|+.|+|++|.. ..++ .+..+++|+.|+|++++
T Consensus 148 ---~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i-~~l~-------------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 148 ---VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDLR-------------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---GGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBCG-------------GGTTCTTCSEEECCSEE
T ss_pred ---hhcccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCCC-CCCh-------------HHccCCCCCEEEccCCc
Confidence 1227889999999988 455555588899999999998843 2221 36678899999998864
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.2e-13 Score=129.99 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=111.7
Q ss_pred eeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEE
Q 039821 242 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELL 320 (555)
Q Consensus 242 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L 320 (555)
.+.+++.++.+..++..- .++++.|++.++. +..+++..|.++++|++|++++| . +..+++ .+..+. +|++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~---l~~~~~~~~~~l~-~L~~L 88 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI-PADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-Q---LQTLSAGVFDDLT-ELGTL 88 (251)
T ss_dssp GTEEECTTCCCSSCCSCC-CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-C---CCCCCTTTTTTCT-TCCEE
T ss_pred CeEEecCCCCccccCCCC-CCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-c---CCccCHhHhccCC-cCCEE
Confidence 445666666666655432 2577788887554 66666666777888888888887 4 444443 456676 88888
Q ss_pred EcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecc
Q 039821 321 DISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDY 399 (555)
Q Consensus 321 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 399 (555)
++++|.+..+|. .+..+++|++|++++| .+..+|.. .|..+++|++|+++++ .++.++...
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~ 150 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG----------------VFDRLTKLKELRLNTN-QLQSIPAGA 150 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChh----------------HhccCCcccEEECcCC-cCCccCHHH
Confidence 888888887775 4577888888888887 56667654 2456677777777665 333333211
Q ss_pred cccccccccccccccccEEEEeecCCCCccc--ccccCCCCceEEeecCC
Q 039821 400 TEIVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~ 447 (555)
...+++|+.|++++|. ++.++ .+..+++|++|++++|+
T Consensus 151 ---------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 ---------FDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---------TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---------cCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 1256777777777773 33333 46677778888877774
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=139.44 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=16.3
Q ss_pred cccEEEcCCCCCcccch-hhhCCCCCcEEccCCC
Q 039821 316 SLELLDISHTSIRELPE-ELKKLVNLKCLNLRRT 348 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 348 (555)
+|++|++++|.+..+|. .++.+++|++|++++|
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 55555555555544432 3444555555555554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=141.00 Aligned_cols=201 Identities=15% Similarity=0.089 Sum_probs=140.5
Q ss_pred cCCcccEEEecCCCCCccccccChhH--hhhhccccEEEcCCCCCccc-c----hhhhCCCCCcEEccCCCccccccchH
Q 039821 285 FMPSLKVLKMSNCGKSWSNFQLPVGM--SELGSSLELLDISHTSIREL-P----EELKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~lp~~~--~~l~~~L~~L~l~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
.+++|++|++++|.. ....|..+ ..+. +|++|++++|.+... | ..+..+++|++|++++| .+..+|..
T Consensus 89 ~~~~L~~L~l~~n~l---~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~ 163 (310)
T 4glp_A 89 AYSRLKELTLEDLKI---TGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE 163 (310)
T ss_dssp HHSCCCEEEEESCCC---BSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT
T ss_pred ccCceeEEEeeCCEe---ccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH
Confidence 356799999999954 44566666 7777 999999999988853 2 24567999999999999 56666654
Q ss_pred HHhccccccccccCccccCCCccccccccccccccce--eeecccccccccccccccccccEEEEeecCCCCcccc----
Q 039821 358 LISNSSRDTTSVIDATAFADLNHLNELWIDRAKELEL--LKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTF---- 431 (555)
Q Consensus 358 ~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---- 431 (555)
.++.+++|++|+++++.-... ++... ....+++|++|++++| .++.++.
T Consensus 164 ----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 218 (310)
T 4glp_A 164 ----------------QVRAFPALTSLDLSDNPGLGERGLMAAL--------CPHKFPAIQNLALRNT-GMETPTGVCAA 218 (310)
T ss_dssp ----------------SCCCCTTCCEEECCSCTTCHHHHHHTTS--------CTTSSCCCCSCBCCSS-CCCCHHHHHHH
T ss_pred ----------------HhccCCCCCEEECCCCCCccchhhhHHH--------hhhcCCCCCEEECCCC-CCCchHHHHHH
Confidence 467788899999988853321 11111 1126788999999988 5555443
Q ss_pred -cccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccccccccCCCCcceEEEcCCCCCC
Q 039821 432 -LVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIYWKPLPFTHLKEMVVRGCDQLE 510 (555)
Q Consensus 432 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~l~~C~~L~ 510 (555)
++.+++|++|++++|......|. ....+..+++|++|+++++ .++.+|... +++|+.|+++++ +++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~---------~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~ 285 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNP---------SAPRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLN 285 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCS---------CCSSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCC
T ss_pred HHhcCCCCCEEECCCCCCCccchh---------hHHhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCC
Confidence 36789999999998864333222 1112233479999999885 677777654 388999999886 677
Q ss_pred ccCCCCCccc-ccceEEech
Q 039821 511 KLPLDSNSAK-ERKFVIRGE 529 (555)
Q Consensus 511 ~lp~~~~~~~-L~~l~i~~~ 529 (555)
.+|.. ..++ |+.++++++
T Consensus 286 ~~~~~-~~l~~L~~L~L~~N 304 (310)
T 4glp_A 286 RAPQP-DELPEVDNLTLDGN 304 (310)
T ss_dssp SCCCT-TSCCCCSCEECSST
T ss_pred CCchh-hhCCCccEEECcCC
Confidence 77763 3444 888888765
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=4.6e-15 Score=149.31 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=69.9
Q ss_pred cCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCC----Ccc-cccccCCCCceEEeecCCcc
Q 039821 375 FADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKL----KDT-TFLVFAPNLKSLSLFHCGAM 449 (555)
Q Consensus 375 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~~-~~l~~l~~L~~L~l~~~~~~ 449 (555)
+..+++|++|++++|. +....... -.+..+..+++|+.|++++|..- ..+ ..+..+++|++|+|++|...
T Consensus 183 l~~~~~L~~L~L~~n~-l~~~g~~~----l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNG-IRPEGIEH----LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHCTTCCEEECCSSC-CCHHHHHH----HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHhCCCcCEEECcCCC-CCHhHHHH----HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 4567788888887762 22100000 00112236788888888888431 222 35677888888888888643
Q ss_pred hhhhccCcccccccccCCC--CCCcccceeecCccccccc-----ccccc-cCCCCcceEEEcCCC
Q 039821 450 EEIISVGKFAEVPEMMGHI--SPFENLRLLRLSHLPNLKS-----IYWKP-LPFTHLKEMVVRGCD 507 (555)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~L~~-----l~~~~-~~~~~L~~L~l~~C~ 507 (555)
..... .++..+ +.+++|+.|++++| .+.. ++... .++++|+.|++++|+
T Consensus 258 ~~~~~--------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhhHH--------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 33100 000122 34788888888886 4444 55444 457888888888874
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=3.4e-13 Score=126.87 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=78.8
Q ss_pred ceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhccccEEEcCCCCCcccch-hhhCCCCCc
Q 039821 264 LLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSLELLDISHTSIRELPE-ELKKLVNLK 341 (555)
Q Consensus 264 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~ 341 (555)
.+++++.++ .+..+|... ..+|+.|++++| . +..++ ..+..+. +|++|++++|.+..++. .+..+++|+
T Consensus 16 ~~~l~~~~~-~l~~~p~~~---~~~l~~L~L~~n-~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGI---PADTEKLDLQST-G---LATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GTEEECTTC-CCSSCCSCC---CTTCCEEECTTS-C---CCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CeEEecCCC-CccccCCCC---CCCCCEEEccCC-C---cCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCC
Confidence 455666533 355555431 245667777666 3 33333 3455565 67777777776666654 356666777
Q ss_pred EEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEe
Q 039821 342 CLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIH 421 (555)
Q Consensus 342 ~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 421 (555)
+|++++| .+..+|.. .|..+++|++|+++++ .++.++... ...+++|+.|+++
T Consensus 87 ~L~L~~n-~l~~~~~~----------------~~~~l~~L~~L~L~~N-~l~~~~~~~---------~~~l~~L~~L~Ls 139 (251)
T 3m19_A 87 TLGLANN-QLASLPLG----------------VFDHLTQLDKLYLGGN-QLKSLPSGV---------FDRLTKLKELRLN 139 (251)
T ss_dssp EEECTTS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECC
T ss_pred EEECCCC-cccccChh----------------HhcccCCCCEEEcCCC-cCCCcChhH---------hccCCcccEEECc
Confidence 7777666 45555543 2455566666666554 233222211 1145566666666
Q ss_pred ecCCCCccc--ccccCCCCceEEeecC
Q 039821 422 ICQKLKDTT--FLVFAPNLKSLSLFHC 446 (555)
Q Consensus 422 ~~~~l~~~~--~l~~l~~L~~L~l~~~ 446 (555)
+| .++.++ .++.+++|++|++++|
T Consensus 140 ~N-~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 140 TN-QLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CC-cCCccCHHHcCcCcCCCEEECCCC
Confidence 65 333332 3555666666666655
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=2.1e-13 Score=123.17 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=74.8
Q ss_pred CCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcc-cchhhhCCCC
Q 039821 261 CPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRE-LPEELKKLVN 339 (555)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~-lp~~i~~L~~ 339 (555)
+++|+.|+++++. +..++. +..+++|++|++++| . +..+ +.+..+. +|++|++++|.+.. .|..++.+++
T Consensus 43 l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~l~~n-~---~~~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLTG--IEYAHNIKDLTINNI-H---ATNY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHTCCEEEEESSC-CSCCTT--GGGCTTCSEEEEESC-C---CSCC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred cCCccEEeccCCC-ccChHH--HhcCCCCCEEEccCC-C---CCcc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCC
Confidence 3444445554332 333331 445555555555555 3 3322 2444454 55555555555554 3445555556
Q ss_pred CcEEccCCCccccc-cchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEE
Q 039821 340 LKCLNLRRTELLNK-IPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCV 418 (555)
Q Consensus 340 L~~L~l~~~~~l~~-lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 418 (555)
|++|++++|. +.. .|. .++.+++|++|++++|..+..++ . ...+++|+.|
T Consensus 114 L~~L~Ls~n~-i~~~~~~-----------------~l~~l~~L~~L~L~~n~~i~~~~-~----------l~~l~~L~~L 164 (197)
T 4ezg_A 114 LTLLDISHSA-HDDSILT-----------------KINTLPKVNSIDLSYNGAITDIM-P----------LKTLPELKSL 164 (197)
T ss_dssp CCEEECCSSB-CBGGGHH-----------------HHTTCSSCCEEECCSCTBCCCCG-G----------GGGCSSCCEE
T ss_pred CCEEEecCCc-cCcHhHH-----------------HHhhCCCCCEEEccCCCCccccH-h----------hcCCCCCCEE
Confidence 6666665552 222 222 13344555555555543233221 1 1156666666
Q ss_pred EEeecCCCCcccccccCCCCceEEeecCC
Q 039821 419 TIHICQKLKDTTFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 419 ~l~~~~~l~~~~~l~~l~~L~~L~l~~~~ 447 (555)
++++| .++.++.+..+++|++|++++|.
T Consensus 165 ~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 165 NIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred ECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 76666 45555566777777777777763
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=3.7e-14 Score=142.61 Aligned_cols=220 Identities=16% Similarity=0.128 Sum_probs=109.1
Q ss_pred cceeEeeccccccccc------cCCCCCCcceEEEcccCc--chh-ccchh------HhccCCcccEEEecCCCCCcccc
Q 039821 240 ENVRRLSLMQNQIETL------SEVPTCPHLLTLFLDFNE--DVE-MIADG------FFQFMPSLKVLKMSNCGKSWSNF 304 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l------~~~~~~~~L~~L~l~~~~--~~~-~~~~~------~~~~l~~L~~L~l~~~~~~~~~~ 304 (555)
.+++.|++.++.+... ..+..+++|++|+++++. .+. .+|.. .+..+++|++|++++|.. ..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l---~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF---GP 108 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC---CT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC---CH
Confidence 4566677766655432 123456677777766542 111 12222 135666777777776632 11
Q ss_pred ----ccChhHhhhhccccEEEcCCCCCcc-----cchhhhCC---------CCCcEEccCCCccc-cccch--HHHhccc
Q 039821 305 ----QLPVGMSELGSSLELLDISHTSIRE-----LPEELKKL---------VNLKCLNLRRTELL-NKIPR--QLISNSS 363 (555)
Q Consensus 305 ----~lp~~~~~l~~~L~~L~l~~~~i~~-----lp~~i~~L---------~~L~~L~l~~~~~l-~~lp~--~~i~~l~ 363 (555)
.+|..+..+. +|++|++++|.+.. ++..+..+ ++|++|++++|..- ..+|. ..+..+.
T Consensus 109 ~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 2555666665 77777777776643 22233333 67777777766321 23331 1134444
Q ss_pred cc---cccccCcc----------ccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcc-
Q 039821 364 RD---TTSVIDAT----------AFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDT- 429 (555)
Q Consensus 364 ~L---~L~~~~~~----------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 429 (555)
+| .++...+. .+..+++|+.|++++|. +... ....++..+..+++|+.|++++|. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~-----g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 260 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHL-----GSSALAIALKSWPNLRELGLNDCL-LSARG 260 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHH-----HHHHHHHHGGGCTTCCEEECTTCC-CCHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcH-----HHHHHHHHHccCCCcCEEECCCCC-Cchhh
Confidence 44 22222222 34456666666666553 1100 000011112256667777777663 3321
Q ss_pred -----ccc--ccCCCCceEEeecCCcchh----hhccCcccccccccCCC-CCCcccceeecCcc
Q 039821 430 -----TFL--VFAPNLKSLSLFHCGAMEE----IISVGKFAEVPEMMGHI-SPFENLRLLRLSHL 482 (555)
Q Consensus 430 -----~~l--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~~~~~~-~~~~~L~~L~l~~~ 482 (555)
..+ +.+++|++|+|++|..... ++. .+ ..+++|++|+++++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcCCCceEEEccCC
Confidence 233 2367777777777654431 322 22 34567777777664
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=8.7e-15 Score=151.00 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred ccceeEeecccccccc-----cc-CCCCCCcceEEEcccCcchhcc-chhHhccCC----cccEEEecCCCCCc-ccccc
Q 039821 239 WENVRRLSLMQNQIET-----LS-EVPTCPHLLTLFLDFNEDVEMI-ADGFFQFMP----SLKVLKMSNCGKSW-SNFQL 306 (555)
Q Consensus 239 ~~~l~~L~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~-~~~~l 306 (555)
.++++.|++.++.+.. ++ ....+++|++|+++++. +... +...+..++ +|++|++++|.... ....+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3456666666655542 11 12445666666666543 2221 222223333 46666666662200 00134
Q ss_pred ChhHhhhhccccEEEcCCCCCcccc-hhhh-----CCCCCcEEccCCC
Q 039821 307 PVGMSELGSSLELLDISHTSIRELP-EELK-----KLVNLKCLNLRRT 348 (555)
Q Consensus 307 p~~~~~l~~~L~~L~l~~~~i~~lp-~~i~-----~L~~L~~L~l~~~ 348 (555)
|..+..+. +|++|++++|.+.... ..+. ..++|++|++++|
T Consensus 106 ~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 106 SSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 55555555 6666666666654321 1111 2345666666666
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1e-13 Score=131.27 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=76.3
Q ss_pred eeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEE
Q 039821 242 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLD 321 (555)
Q Consensus 242 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~ 321 (555)
+..+.+..+.+..++....+++|+.|+++++ .+..++ .+..+++|++|++++| . +..+|. +..+. +|++|+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N-~---i~~~~~-l~~l~-~L~~L~ 91 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHN-Q---ISDLSP-LKDLT-KLEELS 91 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-C---CCCCGG-GTTCS-SCCEEE
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCC-c---cCCChh-hccCC-CCCEEE
Confidence 3344444444444444444555555555543 244443 1455555555555555 3 444444 44554 555555
Q ss_pred cCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccc
Q 039821 322 ISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTE 401 (555)
Q Consensus 322 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 401 (555)
+++|.+..+|... . .+|++|++++| .+..+|. +..+++|+.|+++++. ++.++
T Consensus 92 L~~N~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~~------------------l~~l~~L~~L~Ls~N~-i~~~~----- 144 (263)
T 1xeu_A 92 VNRNRLKNLNGIP-S-ACLSRLFLDNN-ELRDTDS------------------LIHLKNLEILSIRNNK-LKSIV----- 144 (263)
T ss_dssp CCSSCCSCCTTCC-C-SSCCEEECCSS-CCSBSGG------------------GTTCTTCCEEECTTSC-CCBCG-----
T ss_pred CCCCccCCcCccc-c-CcccEEEccCC-ccCCChh------------------hcCcccccEEECCCCc-CCCCh-----
Confidence 5555555555422 2 55555555555 3344432 2444455555554442 22211
Q ss_pred cccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecC
Q 039821 402 IVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHC 446 (555)
Q Consensus 402 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~ 446 (555)
....+++|+.|++++| .++.+..+..+++|+.|++++|
T Consensus 145 ------~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 ------MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ------GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEE
T ss_pred ------HHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCC
Confidence 0114455555555554 3333344455555555555555
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=2.4e-13 Score=122.82 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=63.9
Q ss_pred cCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccc-cchHHHhccc
Q 039821 285 FMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNK-IPRQLISNSS 363 (555)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~~i~~l~ 363 (555)
.+++|++|++++| . +..+| .+..+. +|++|++++|.+..++ .+..+++|++|++++|. +.. .|.
T Consensus 42 ~l~~L~~L~l~~n-~---i~~l~-~l~~l~-~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~------- 106 (197)
T 4ezg_A 42 QMNSLTYITLANI-N---VTDLT-GIEYAH-NIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIP------- 106 (197)
T ss_dssp HHHTCCEEEEESS-C---CSCCT-TGGGCT-TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSC-------
T ss_pred hcCCccEEeccCC-C---ccChH-HHhcCC-CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccCh-------
Confidence 3455666666666 3 44555 455555 6666666666555554 45566666666666662 332 222
Q ss_pred cccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCcccccccCCCCceEEe
Q 039821 364 RDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSL 443 (555)
Q Consensus 364 ~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l 443 (555)
.++.+++|+.|+++++.--...+. ....+++|+.|++++|..++.++.+..+++|++|++
T Consensus 107 ----------~l~~l~~L~~L~Ls~n~i~~~~~~----------~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l 166 (197)
T 4ezg_A 107 ----------NLSGLTSLTLLDISHSAHDDSILT----------KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166 (197)
T ss_dssp ----------CCTTCTTCCEEECCSSBCBGGGHH----------HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred ----------hhcCCCCCCEEEecCCccCcHhHH----------HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence 234455555555555421111110 011445555555555533444444555555555555
Q ss_pred ecC
Q 039821 444 FHC 446 (555)
Q Consensus 444 ~~~ 446 (555)
++|
T Consensus 167 ~~n 169 (197)
T 4ezg_A 167 QFD 169 (197)
T ss_dssp TTB
T ss_pred CCC
Confidence 554
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=1.2e-14 Score=149.99 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=92.4
Q ss_pred CccceeEeeccccccccc--cCC-CCCC----cceEEEcccCcchhc----cchhHhccCCcccEEEecCCCCCcccccc
Q 039821 238 GWENVRRLSLMQNQIETL--SEV-PTCP----HLLTLFLDFNEDVEM----IADGFFQFMPSLKVLKMSNCGKSWSNFQL 306 (555)
Q Consensus 238 ~~~~l~~L~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~l 306 (555)
..++++.|+++++.+... ... ..++ +|++|++++|. +.. .....+..+++|++|++++|.. ....
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i---~~~~ 129 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL---GDAG 129 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC---HHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcC---chHH
Confidence 347899999999887552 111 2233 79999999775 442 2244588999999999999943 2222
Q ss_pred ChhHhhh----hccccEEEcCCCCCcc-----cchhhhCCCCCcEEccCCCccccccchHHHh--------ccccccccc
Q 039821 307 PVGMSEL----GSSLELLDISHTSIRE-----LPEELKKLVNLKCLNLRRTELLNKIPRQLIS--------NSSRDTTSV 369 (555)
Q Consensus 307 p~~~~~l----~~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~--------~l~~L~L~~ 369 (555)
+..+... .++|++|++++|.+.. ++..+..+++|++|++++|. +...+...+. +++.|.++.
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 3333321 1269999999998875 45567778899999999884 4433222122 333333333
Q ss_pred cCcc---------ccCCCccccccccccc
Q 039821 370 IDAT---------AFADLNHLNELWIDRA 389 (555)
Q Consensus 370 ~~~~---------~l~~l~~L~~L~l~~~ 389 (555)
..++ .+..+++|++|+++++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 3322 2334677777777665
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1e-13 Score=131.24 Aligned_cols=168 Identities=22% Similarity=0.318 Sum_probs=129.7
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLV 338 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~ 338 (555)
..+.++..+.+..+ .+..++. +..+++|++|++++| . +..+| .+..+. +|++|++++|.+..+|. +..++
T Consensus 16 ~~l~~l~~l~l~~~-~i~~~~~--~~~l~~L~~L~l~~n-~---i~~l~-~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~ 85 (263)
T 1xeu_A 16 PGLANAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNS-N---IQSLA-GMQFFT-NLKELHLSHNQISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHHTCS-CTTSEEC--HHHHTTCSEEECTTS-C---CCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCS
T ss_pred HHHHHHHHHHhcCC-Ccccccc--hhhcCcCcEEECcCC-C---cccch-HHhhCC-CCCEEECCCCccCCChh-hccCC
Confidence 34555666667644 3666663 678899999999999 6 77777 688887 99999999999999988 89999
Q ss_pred CCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEE
Q 039821 339 NLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCV 418 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 418 (555)
+|++|++++| .+..+|. +.. ++|+.|+++++ .++.++ ....+++|+.|
T Consensus 86 ~L~~L~L~~N-~l~~l~~------------------~~~-~~L~~L~L~~N-~l~~~~-----------~l~~l~~L~~L 133 (263)
T 1xeu_A 86 KLEELSVNRN-RLKNLNG------------------IPS-ACLSRLFLDNN-ELRDTD-----------SLIHLKNLEIL 133 (263)
T ss_dssp SCCEEECCSS-CCSCCTT------------------CCC-SSCCEEECCSS-CCSBSG-----------GGTTCTTCCEE
T ss_pred CCCEEECCCC-ccCCcCc------------------ccc-CcccEEEccCC-ccCCCh-----------hhcCcccccEE
Confidence 9999999999 6777775 233 78888888887 333331 12278999999
Q ss_pred EEeecCCCCcccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccc
Q 039821 419 TIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLP 483 (555)
Q Consensus 419 ~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 483 (555)
++++| .++.++.++.+++|++|++++|...+. ..+..+++|+.|++++++
T Consensus 134 ~Ls~N-~i~~~~~l~~l~~L~~L~L~~N~i~~~--------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 134 SIRNN-KLKSIVMLGFLSKLEVLDLHGNEITNT--------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTS-CCCBCGGGGGCTTCCEEECTTSCCCBC--------------TTSTTCCCCCEEEEEEEE
T ss_pred ECCCC-cCCCChHHccCCCCCEEECCCCcCcch--------------HHhccCCCCCEEeCCCCc
Confidence 99998 577778888999999999999853221 257788999999999853
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=3.1e-13 Score=134.50 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=52.3
Q ss_pred ceeEeeccccccccccC------CCCCC-cceEEEcccCcchhccchhHhccC-----CcccEEEecCCCCCccccc-cC
Q 039821 241 NVRRLSLMQNQIETLSE------VPTCP-HLLTLFLDFNEDVEMIADGFFQFM-----PSLKVLKMSNCGKSWSNFQ-LP 307 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~-lp 307 (555)
+++.|+++++.+..... +..++ +|++|++++|. +.......+..+ ++|++|++++| . +.. .+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~---l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-F---LSYKSS 97 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-C---GGGSCH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC-c---CChHHH
Confidence 46666666666554322 24455 66666666443 444333333332 66666666666 3 322 22
Q ss_pred hhHhhh-----hccccEEEcCCCCCcccch-h----hhC-CCCCcEEccCCC
Q 039821 308 VGMSEL-----GSSLELLDISHTSIRELPE-E----LKK-LVNLKCLNLRRT 348 (555)
Q Consensus 308 ~~~~~l-----~~~L~~L~l~~~~i~~lp~-~----i~~-L~~L~~L~l~~~ 348 (555)
..+... . +|++|++++|.+...+. . +.. .++|++|++++|
T Consensus 98 ~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 98 DELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCC-CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 333332 3 66666666666655543 2 222 246666666666
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=6.5e-13 Score=121.12 Aligned_cols=89 Identities=30% Similarity=0.456 Sum_probs=57.7
Q ss_pred CCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-HhhhhccccEEEcCCCCCcccchh-hhCCC
Q 039821 261 CPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSLELLDISHTSIRELPEE-LKKLV 338 (555)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~ 338 (555)
.++|+.|+++++. +..++...+..+++|++|++++| . +..+|.. +..+. +|++|++++|.+..+|.. ++.++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~---l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-K---LQSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-C---CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-c---cCccChhhcCCCC-CcCEEECCCCcCCccCHhHhcCcc
Confidence 3466777777543 55666655667777777777777 4 5555544 35555 777777777777777653 56677
Q ss_pred CCcEEccCCCccccccch
Q 039821 339 NLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~ 356 (555)
+|++|++++| .+..+|.
T Consensus 101 ~L~~L~L~~N-~l~~~~~ 117 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPD 117 (208)
T ss_dssp TCCEEECCSS-CCCCCCT
T ss_pred CCCEEEcCCC-cCcccCH
Confidence 7777777777 4555554
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.1e-12 Score=133.67 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=117.4
Q ss_pred ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEE
Q 039821 241 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELL 320 (555)
Q Consensus 241 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L 320 (555)
+++.|++.++.+..++... +++|++|++++|. +..+| ..+++|++|++++| . +..+|. ++. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N-~---l~~ip~-l~~---~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNA-LISLP----ELPASLEYLDACDN-R---LSTLPE-LPA---SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC-CSCCC----CCCTTCCEEECCSS-C---CSCCCC-CCT---TCCEE
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCC-Ccccc----cccCCCCEEEccCC-C---CCCcch-hhc---CCCEE
Confidence 5777888887777665532 4778888888554 55666 34678888888888 5 666776 432 78888
Q ss_pred EcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeeccc
Q 039821 321 DISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYT 400 (555)
Q Consensus 321 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 400 (555)
++++|.++.+|. .+++|++|++++| .+..+|. .+++|+.|+++++. ++.++.
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--------------------~l~~L~~L~Ls~N~-L~~lp~--- 177 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE--------------------LPTSLEVLSVRNNQ-LTFLPE--- 177 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--------------------CCTTCCEEECCSSC-CSCCCC---
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC--------------------cCCCcCEEECCCCC-CCCcch---
Confidence 888888888877 5788888888888 4565663 24667777777662 333322
Q ss_pred ccccccccccccccccEEEEeecCCCCcccccccCCCC-------ceEEeecCCcchhhhccCcccccccccCCCCCCcc
Q 039821 401 EIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNL-------KSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFEN 473 (555)
Q Consensus 401 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 473 (555)
+ . ++|+.|++++| .++.+|.+.. +| +.|++++|. +..+|. .+..+++
T Consensus 178 --------l-~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~------------~l~~l~~ 231 (571)
T 3cvr_A 178 --------L-P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPE------------NILSLDP 231 (571)
T ss_dssp --------C-C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCG------------GGGGSCT
T ss_pred --------h-h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecCH------------HHhcCCC
Confidence 1 2 77888888877 4555554332 66 888888773 233332 4455778
Q ss_pred cceeecCccccccccc
Q 039821 474 LRLLRLSHLPNLKSIY 489 (555)
Q Consensus 474 L~~L~l~~~~~L~~l~ 489 (555)
|+.|++++++--..+|
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 8888888754333333
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=2.4e-13 Score=144.87 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=35.3
Q ss_pred CCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCC
Q 039821 260 TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVN 339 (555)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~ 339 (555)
.+++|++|++.++. +..++ ..+..+++|+.|+++.+.........+..+..+. +|+.|+++++....+|..+..+++
T Consensus 218 ~~~~L~~L~L~~~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE-ILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HCTTCCEEECSSCB-GGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCCTTTGGGGGGGGGG
T ss_pred hCCCCcEEeccCcc-HHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccchhHHHHHHhhcCC
Confidence 45556666665432 33333 2244555555555543211000011112222222 333333333333344444444555
Q ss_pred CcEEccCCC
Q 039821 340 LKCLNLRRT 348 (555)
Q Consensus 340 L~~L~l~~~ 348 (555)
|++|++++|
T Consensus 295 L~~L~Ls~~ 303 (592)
T 3ogk_B 295 IRKLDLLYA 303 (592)
T ss_dssp CCEEEETTC
T ss_pred CcEEecCCC
Confidence 555555555
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=6.7e-12 Score=116.11 Aligned_cols=143 Identities=26% Similarity=0.365 Sum_probs=105.9
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+.+.+..+..+|.. -..+++.|++.++.+..+.. +..+++|++|+++++. +..++...|..+++|++|++++| .
T Consensus 24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~- 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-Q- 99 (229)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C-
T ss_pred eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-c-
Confidence 44445555555542 23678888888888877643 4778888888888654 67777777788888899998888 5
Q ss_pred ccccccChh-HhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCc
Q 039821 301 WSNFQLPVG-MSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLN 379 (555)
Q Consensus 301 ~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~ 379 (555)
+..+|.. +..+. +|++|++++|.+..+|..+..+++|++|++++| .+..+|.. .+..++
T Consensus 100 --l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~ 159 (229)
T 3e6j_A 100 --LTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHG----------------AFDRLS 159 (229)
T ss_dssp --CCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTT----------------TTTTCT
T ss_pred --CCccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHH----------------HHhCCC
Confidence 6667655 45676 888999988888888888888888899998888 67777754 345666
Q ss_pred cccccccccc
Q 039821 380 HLNELWIDRA 389 (555)
Q Consensus 380 ~L~~L~l~~~ 389 (555)
+|+.|++.++
T Consensus 160 ~L~~L~l~~N 169 (229)
T 3e6j_A 160 SLTHAYLFGN 169 (229)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEEeeCC
Confidence 6777666654
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=8e-12 Score=134.11 Aligned_cols=254 Identities=17% Similarity=0.108 Sum_probs=145.5
Q ss_pred ccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhcccc
Q 039821 239 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLE 318 (555)
Q Consensus 239 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~ 318 (555)
..+++.+.+..+.+..+........++.|.+..+. +..++. ..+..|+.+.+..+ . .... .....++ +|+
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~---~~l~~L~~l~l~~n-~---~~~~-~~~~~l~-~L~ 374 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPT---LKLKSLKRLTFTSN-K---GGNA-FSEVDLP-SLE 374 (635)
T ss_dssp GTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCE-ESSCCC---CBCTTCCEEEEESC-C---SCCB-CCCCBCT-TCC
T ss_pred hcccccccccccccccccccccchhhhhhhccccc-ccCcCc---ccchhhhhcccccc-c---CCCC-ccccccc-ccc
Confidence 34566666666666666566666677777776443 333332 23455666666655 2 2211 1223444 666
Q ss_pred EEEcCCCCCcc---cchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccC--------ccccCCCcccccccc
Q 039821 319 LLDISHTSIRE---LPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVID--------ATAFADLNHLNELWI 386 (555)
Q Consensus 319 ~L~l~~~~i~~---lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~--------~~~l~~l~~L~~L~l 386 (555)
+|+++++.+.. .+.....+.+|++|++..+. ...++.. +..+..| .+.... ...+..+++++.+++
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccc-ccccccc-ccccccccchhhhhccccccccccccccccccccccc
Confidence 66666665542 34455556666666666653 2333332 3444444 222211 123556677777766
Q ss_pred ccccccceeeecccccccccccccccccccEEEEeecCCCCc--ccccccCCCCceEEeecCCcchhhhccCcccccccc
Q 039821 387 DRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD--TTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEM 464 (555)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 464 (555)
+.+. +..... .....+++|+.|++++|..... +..+..+++|++|+|++|.. +.+++
T Consensus 453 s~n~-l~~~~~---------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L-~~l~~---------- 511 (635)
T 4g8a_A 453 SHTH-TRVAFN---------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP---------- 511 (635)
T ss_dssp TTSC-CEECCT---------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECT----------
T ss_pred cccc-cccccc---------cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc-CCcCh----------
Confidence 6553 221111 1112578888888888754443 23577888888888888843 33322
Q ss_pred cCCCCCCcccceeecCcccccccccc-cccCCCCcceEEEcCCCCCCccCC-CCCcc-c-ccceEEec
Q 039821 465 MGHISPFENLRLLRLSHLPNLKSIYW-KPLPFTHLKEMVVRGCDQLEKLPL-DSNSA-K-ERKFVIRG 528 (555)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~~~~L~~L~l~~C~~L~~lp~-~~~~~-~-L~~l~i~~ 528 (555)
..++.+++|++|+++++ ++..++. ....+++|+.|+++++ +++.++. ....+ + |+.+++++
T Consensus 512 -~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 512 -TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred -HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 25777888888888885 6666644 3556788888888885 5555544 33443 3 78888864
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=5.5e-12 Score=114.89 Aligned_cols=175 Identities=22% Similarity=0.323 Sum_probs=131.3
Q ss_pred EEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
.+.+.+.+...++.. ...++++|++.++.+..++. +..+++|++|++.++ .+..++...|..+++|++|++++| .
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-c
Confidence 344455555555532 24689999999999988765 478999999999965 477888887899999999999999 5
Q ss_pred CccccccChh-HhhhhccccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCC
Q 039821 300 SWSNFQLPVG-MSELGSSLELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFAD 377 (555)
Q Consensus 300 ~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~ 377 (555)
+..+|.. +..+. +|++|++++|.+..+|.. +..+++|++|++++| .+..+|.. .+..
T Consensus 88 ---l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~----------------~~~~ 146 (208)
T 2o6s_A 88 ---LQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG----------------VFDR 146 (208)
T ss_dssp ---CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT----------------TTTT
T ss_pred ---CCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHH----------------Hhcc
Confidence 6677665 57787 999999999999999875 788999999999999 67778764 3566
Q ss_pred CccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc-ccccCCC
Q 039821 378 LNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPN 437 (555)
Q Consensus 378 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~ 437 (555)
+++|+.|+++++.-. +.+++|+.|.++.+.....+| +++.++.
T Consensus 147 l~~L~~L~l~~N~~~-----------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD-----------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBC-----------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCee-----------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 777777777776211 146667777776664443333 5555544
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=7.4e-13 Score=141.13 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=38.2
Q ss_pred cceeEeecccccccc-----ccCC-CCCCcceEEEcccCcchhccch----hHhccCCcccEEEecCCCCCccccccChh
Q 039821 240 ENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNEDVEMIAD----GFFQFMPSLKVLKMSNCGKSWSNFQLPVG 309 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~lp~~ 309 (555)
++++.|++.++.+.. +... ..+++|++|++.++. ..+.. .....+++|++|++++|.. +..+|..
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~ 230 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATL 230 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHH
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHH
Confidence 456666666554332 2222 355666666666543 11111 1123356666666666633 3445555
Q ss_pred HhhhhccccEEEcC
Q 039821 310 MSELGSSLELLDIS 323 (555)
Q Consensus 310 ~~~l~~~L~~L~l~ 323 (555)
+..+. +|++|+++
T Consensus 231 ~~~~~-~L~~L~l~ 243 (594)
T 2p1m_B 231 LQRAP-QLEELGTG 243 (594)
T ss_dssp HHHCT-TCSEEECS
T ss_pred HhcCC-cceEcccc
Confidence 55554 55555543
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=9.4e-13 Score=140.34 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=66.4
Q ss_pred cceeEeecccccccc--ccCC-CCCCcceEEEcccCcchhcc-chhHhccCCcccEEEecCCCCC-ccccccChhHhhhh
Q 039821 240 ENVRRLSLMQNQIET--LSEV-PTCPHLLTLFLDFNEDVEMI-ADGFFQFMPSLKVLKMSNCGKS-WSNFQLPVGMSELG 314 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~~lp~~~~~l~ 314 (555)
.++++|++.++.+.. +... ..+++|++|++.+|..+... .......+++|++|++++|... .....++.....+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 467777777665433 1112 24677777777766444332 2223446777777777777310 00111222222444
Q ss_pred ccccEEEcCCCC--Cc--ccchhhhCCCCCcEEccCCCccccccchHHHhccccc
Q 039821 315 SSLELLDISHTS--IR--ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD 365 (555)
Q Consensus 315 ~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 365 (555)
+|++|++++|. +. .++.-+..+++|++|++++|..+..+|.. +..+.+|
T Consensus 185 -~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L 237 (594)
T 2p1m_B 185 -SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQL 237 (594)
T ss_dssp -CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTC
T ss_pred -cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcc
Confidence 77777777775 21 22223345677777877777555555543 5555555
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.2e-11 Score=113.56 Aligned_cols=145 Identities=28% Similarity=0.376 Sum_probs=98.1
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
..+.+.+..+..+|... ..+++.|.+.++.+..++. +..+++|+.|+++++. +..+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-
Confidence 34455555566665422 2577888888887777653 4677788888887554 66665556777888888888887
Q ss_pred CCccccccChhH-hhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccC
Q 039821 299 KSWSNFQLPVGM-SELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFA 376 (555)
Q Consensus 299 ~~~~~~~lp~~~-~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~ 376 (555)
. +..+|..+ ..+. +|++|++++|.+..++. .+..+++|++|++++| .+..+|.. .|.
T Consensus 91 ~---l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~ 149 (220)
T 2v9t_B 91 K---ITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKG----------------TFS 149 (220)
T ss_dssp C---CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT----------------TTT
T ss_pred c---CCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHH----------------HHh
Confidence 5 66676654 5565 88888888888877744 6777888888888887 56666653 245
Q ss_pred CCccccccccccc
Q 039821 377 DLNHLNELWIDRA 389 (555)
Q Consensus 377 ~l~~L~~L~l~~~ 389 (555)
.+++|+.|+++++
T Consensus 150 ~l~~L~~L~L~~N 162 (220)
T 2v9t_B 150 PLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 5666666666554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=4.5e-12 Score=125.99 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=83.4
Q ss_pred eeccccccccccCCCCCCcceEEEcccCcchhccchhHhc-cCCcccEEEecCCCCCccccccC-hhHhhhhccccEEEc
Q 039821 245 LSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQ-FMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSLELLDI 322 (555)
Q Consensus 245 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L~~L~l 322 (555)
+++.++.+..+|.. -...++.|+++++. +..++...+. .+++|++|++++| . +..++ ..+..+. +|++|+|
T Consensus 23 l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~---i~~i~~~~~~~l~-~L~~L~L 95 (361)
T 2xot_A 23 LSCSKQQLPNVPQS-LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-H---LNFISSEAFVPVP-NLRYLDL 95 (361)
T ss_dssp EECCSSCCSSCCSS-CCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-C---CCEECTTTTTTCT-TCCEEEC
T ss_pred EEeCCCCcCccCcc-CCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-c---CCccChhhccCCC-CCCEEEC
Confidence 44444444444321 12335555655432 4445444444 5566666666655 3 44443 2345554 6666666
Q ss_pred CCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccc
Q 039821 323 SHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTE 401 (555)
Q Consensus 323 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 401 (555)
++|.+..+|. .+..+++|++|++++| .+..+++. .|.++++|+.|+++++ .+..++.....
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~----------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 157 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRN----------------AFEDMAQLQKLYLSQN-QISRFPVELIK 157 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT----------------TTTTCTTCCEEECCSS-CCCSCCGGGTC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHH----------------HhCCcccCCEEECCCC-cCCeeCHHHhc
Confidence 6666665554 3555666666666665 34444332 2445555555555554 22222222100
Q ss_pred cccccccccccccccEEEEeecCCCCccc--ccccCCC--CceEEeecCC
Q 039821 402 IVRKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPN--LKSLSLFHCG 447 (555)
Q Consensus 402 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~--L~~L~l~~~~ 447 (555)
....+++|+.|++++| .++.++ .+..++. |+.|++.+|+
T Consensus 158 ------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 158 ------DGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ------CcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 0014566666666666 344433 3445554 3667776654
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.3e-13 Score=144.81 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=115.9
Q ss_pred ccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCC--------------CcccchhhhCCCCCcEEc-cCCC
Q 039821 284 QFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTS--------------IRELPEELKKLVNLKCLN-LRRT 348 (555)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~--------------i~~lp~~i~~L~~L~~L~-l~~~ 348 (555)
...++|+.|++++| . +..+|+.++.+. +|+.|+++++. ....|..++.+++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n-~---L~~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVE-K---STVLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHH-H---HHHHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChh-h---HHhhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 45677888888888 5 778888888887 88888876652 223455677788888887 4444
Q ss_pred ccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCc
Q 039821 349 ELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKD 428 (555)
Q Consensus 349 ~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 428 (555)
.+..++...+ ....+..+. ...|+.|+++++ .++.++ . +..+++|+.|++++|. ++.
T Consensus 421 -~~~~L~~l~l--------~~n~i~~l~-~~~L~~L~Ls~n-~l~~lp----------~-~~~l~~L~~L~Ls~N~-l~~ 477 (567)
T 1dce_A 421 -YLDDLRSKFL--------LENSVLKME-YADVRVLHLAHK-DLTVLC----------H-LEQLLLVTHLDLSHNR-LRA 477 (567)
T ss_dssp -HHHHHHHHHH--------HHHHHHHHH-HTTCSEEECTTS-CCSSCC----------C-GGGGTTCCEEECCSSC-CCC
T ss_pred -ccchhhhhhh--------hcccccccC-ccCceEEEecCC-CCCCCc----------C-ccccccCcEeecCccc-ccc
Confidence 3333332111 000000110 123566666655 333332 1 2367788888888774 334
Q ss_pred c-cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc--cccccCCCCcceEEEcC
Q 039821 429 T-TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI--YWKPLPFTHLKEMVVRG 505 (555)
Q Consensus 429 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l--~~~~~~~~~L~~L~l~~ 505 (555)
+ ..++.+++|+.|+|++|... .++ .++.+++|+.|+++++ .+..+ |..+..+++|+.|++++
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~-~lp-------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALE-NVD-------------GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC-CCG-------------GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cchhhhcCCCCCEEECCCCCCC-CCc-------------ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC
Confidence 4 46777888888888877422 221 3566778888888774 56666 66667778888888877
Q ss_pred CCCCCccCCCC
Q 039821 506 CDQLEKLPLDS 516 (555)
Q Consensus 506 C~~L~~lp~~~ 516 (555)
+ .++.+|...
T Consensus 543 N-~l~~~~~~~ 552 (567)
T 1dce_A 543 N-SLCQEEGIQ 552 (567)
T ss_dssp S-GGGGSSSCT
T ss_pred C-cCCCCccHH
Confidence 5 466665543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3e-11 Score=126.16 Aligned_cols=184 Identities=20% Similarity=0.164 Sum_probs=135.5
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcc
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWS 302 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 302 (555)
+...+..+..+|... ..+++.|++++|.+..++ ..+++|++|++++|. +..+|. +.. +|++|++++| .
T Consensus 64 L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~--l~~--~L~~L~Ls~N-~--- 131 (571)
T 3cvr_A 64 LQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNR-LSTLPE--LPA--SLKHLDVDNN-Q--- 131 (571)
T ss_dssp EECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC-CSCCCC--CCT--TCCEEECCSS-C---
T ss_pred EEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCC-CCCcch--hhc--CCCEEECCCC-c---
Confidence 444444555555432 368999999999999888 678999999999764 667776 444 9999999999 5
Q ss_pred ccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccc
Q 039821 303 NFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLN 382 (555)
Q Consensus 303 ~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~ 382 (555)
+..+|. .+. +|++|++++|.++.+|. .+++|++|++++| .+..+|. +. ++|+
T Consensus 132 l~~lp~---~l~-~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~------------------l~--~~L~ 183 (571)
T 3cvr_A 132 LTMLPE---LPA-LLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE------------------LP--ESLE 183 (571)
T ss_dssp CSCCCC---CCT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC------------------CC--TTCC
T ss_pred CCCCCC---cCc-cccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch------------------hh--CCCC
Confidence 677887 455 99999999999999997 5899999999999 5777775 22 6788
Q ss_pred ccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc-ccccCCCCceEEeecCCcchhhhc
Q 039821 383 ELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT-FLVFAPNLKSLSLFHCGAMEEIIS 454 (555)
Q Consensus 383 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 454 (555)
.|+++++ .++.++. ... ......+.|+.|++++| .++.+| .+..+++|+.|+|++|+..+.++.
T Consensus 184 ~L~Ls~N-~L~~lp~-~~~-----~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 184 ALDVSTN-LLESLPA-VPV-----RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EEECCSS-CCSSCCC-CC-------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred EEECcCC-CCCchhh-HHH-----hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 8888776 4444443 110 00002233499999998 455555 688899999999999987666554
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1.2e-11 Score=113.72 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=69.3
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEc
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDI 322 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l 322 (555)
.+...++.+..+|..- .++|+.|++.++. +..++...|..+++|++|++++| . +..+ |..+..+. +|++|++
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N-~---i~~~~~~~~~~l~-~L~~L~L 87 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNN-Q---ISELAPDAFQGLR-SLNSLVL 87 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSS-C---CCEECTTTTTTCS-SCCEEEC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCC-c---CCCcCHHHhhCCc-CCCEEEC
Confidence 4556666666655432 2567777777543 66666656777777777777777 4 4444 56667776 7777777
Q ss_pred CCCCCcccchh-hhCCCCCcEEccCCCccccccch
Q 039821 323 SHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 323 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
++|.++.+|.. +..+++|++|++++| .+..+++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~ 121 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRV 121 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCH
Confidence 77777777764 466777777777777 4555544
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=9.2e-12 Score=123.84 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=131.6
Q ss_pred CCCCcceEEEcccCcchhccch----hHhccCC-cccEEEecCCCCCccccc-cChhHhhh-----hccccEEEcCCCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIAD----GFFQFMP-SLKVLKMSNCGKSWSNFQ-LPVGMSEL-----GSSLELLDISHTSI 327 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~-lp~~~~~l-----~~~L~~L~l~~~~i 327 (555)
...++|++|+++++. +...+. ..+..++ +|++|++++| . +.. .+..+..+ . +|++|++++|.+
T Consensus 19 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~---l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l 92 (362)
T 3goz_A 19 SIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-S---LGFKNSDELVQILAAIPA-NVTSLNLSGNFL 92 (362)
T ss_dssp TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-C---GGGSCHHHHHHHHHTSCT-TCCEEECCSSCG
T ss_pred hCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-C---CCHHHHHHHHHHHhccCC-CccEEECcCCcC
Confidence 334558888888665 666655 5577777 8888888888 4 433 35556655 5 888888888888
Q ss_pred cccch-h----hhCC-CCCcEEccCCCccccccchHHHh--------ccccccccccCcc---------ccCCCc-cccc
Q 039821 328 RELPE-E----LKKL-VNLKCLNLRRTELLNKIPRQLIS--------NSSRDTTSVIDAT---------AFADLN-HLNE 383 (555)
Q Consensus 328 ~~lp~-~----i~~L-~~L~~L~l~~~~~l~~lp~~~i~--------~l~~L~L~~~~~~---------~l~~l~-~L~~ 383 (555)
...+. . +..+ ++|++|++++| .+...+...+. .|+.|.|+...++ .+..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 76654 2 4444 78888888888 46666554332 2333334333333 122344 7888
Q ss_pred cccccccccceeeeccccccccccccccc-ccccEEEEeecCCCCc-----cc-cccc-CCCCceEEeecCCcchhhhcc
Q 039821 384 LWIDRAKELELLKIDYTEIVRKRREPFVF-RSLHCVTIHICQKLKD-----TT-FLVF-APNLKSLSLFHCGAMEEIISV 455 (555)
Q Consensus 384 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----~~-~l~~-l~~L~~L~l~~~~~~~~~~~~ 455 (555)
|++++|. ++....... ...+... ++|+.|++++|. ++. ++ .+.. .++|++|++++|......+
T Consensus 172 L~Ls~n~-l~~~~~~~l-----~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-- 242 (362)
T 3goz_A 172 LNLRGNN-LASKNCAEL-----AKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL-- 242 (362)
T ss_dssp EECTTSC-GGGSCHHHH-----HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH--
T ss_pred eeecCCC-CchhhHHHH-----HHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH--
Confidence 8887763 222111100 0001123 478888888773 433 22 2333 3578888888875322111
Q ss_pred CcccccccccCCCCCCcccceeecCccc-------ccccccccccCCCCcceEEEcCCC
Q 039821 456 GKFAEVPEMMGHISPFENLRLLRLSHLP-------NLKSIYWKPLPFTHLKEMVVRGCD 507 (555)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~-------~L~~l~~~~~~~~~L~~L~l~~C~ 507 (555)
..+...+..+++|+.|++++|. .+..++.....+++|+.|++++++
T Consensus 243 ------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp ------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ------HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0111134566778888887764 244555555566777777777653
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=7.8e-13 Score=140.90 Aligned_cols=259 Identities=13% Similarity=0.022 Sum_probs=162.2
Q ss_pred cceeEeecccccccc--ccCCCC-CCc-ceEEEcccCcchhcc-chhHhccCCcccEEEecCCCCCccccc----cChhH
Q 039821 240 ENVRRLSLMQNQIET--LSEVPT-CPH-LLTLFLDFNEDVEMI-ADGFFQFMPSLKVLKMSNCGKSWSNFQ----LPVGM 310 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~--l~~~~~-~~~-L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~----lp~~~ 310 (555)
.+++.|++.++.+.. +..... ++. |++|++.+|..+... .......+++|++|++++|.. ... ++...
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~---~~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF---SEKDGKWLHELA 188 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE---ECCCSHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc---cCcchhHHHHHH
Confidence 578888888775543 112222 334 999999877633221 112235789999999998832 111 34445
Q ss_pred hhhhccccEEEcCCCCCc-----ccchhhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCc----------cc
Q 039821 311 SELGSSLELLDISHTSIR-----ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDA----------TA 374 (555)
Q Consensus 311 ~~l~~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~----------~~ 374 (555)
..+. +|++|+++++.+. .++..+..+++|++|++++| .+..+|.. +..+.+| +|..... ..
T Consensus 189 ~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred hcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhcccccccccchHHHHHH
Confidence 5665 9999999998876 44555677899999999998 56677754 7777777 4444211 13
Q ss_pred cCCCccccccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc---ccccCCCCceEEeecCCcchh
Q 039821 375 FADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT---FLVFAPNLKSLSLFHCGAMEE 451 (555)
Q Consensus 375 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~~L~l~~~~~~~~ 451 (555)
+..+++|+.|.+.++ .....+.....+++|++|++++|. ++... .+..+++|++|+++++-....
T Consensus 266 l~~~~~L~~L~l~~~-----------~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-----------GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCCCTTCCEEEETTC-----------CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred hhccccccccCcccc-----------chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence 445556666555443 111222333368899999999996 44322 357899999999995422222
Q ss_pred hhccCcccccccccCCCCCCcccceeecCc----------ccccccc--cccccCCCCcceEEEcCCCCCCccCC-CC-C
Q 039821 452 IISVGKFAEVPEMMGHISPFENLRLLRLSH----------LPNLKSI--YWKPLPFTHLKEMVVRGCDQLEKLPL-DS-N 517 (555)
Q Consensus 452 ~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~----------~~~L~~l--~~~~~~~~~L~~L~l~~C~~L~~lp~-~~-~ 517 (555)
+.. ....+++|++|++++ |..+... ......+++|+.|++ +|.+++.-.. .. .
T Consensus 334 l~~------------~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 334 LEV------------LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGT 400 (592)
T ss_dssp HHH------------HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHH
T ss_pred HHH------------HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHh
Confidence 211 234678999999995 7666532 222345799999999 7777764221 11 1
Q ss_pred ccc-ccceEEech
Q 039821 518 SAK-ERKFVIRGE 529 (555)
Q Consensus 518 ~~~-L~~l~i~~~ 529 (555)
..+ |+.+.+.++
T Consensus 401 ~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 401 YLKNLCDFRLVLL 413 (592)
T ss_dssp HCCSCCEEEEEEC
T ss_pred hCCCCcEEEEeec
Confidence 133 888999754
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=2.5e-11 Score=112.19 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred eEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcCCCCCcccchh-hhCCCCCcE
Q 039821 265 LTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDISHTSIRELPEE-LKKLVNLKC 342 (555)
Q Consensus 265 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~~ 342 (555)
++++..+ ..+..+|... .++|++|++++| . +..+ |..+..+. +|++|++++|.+..+|.. +..+++|++
T Consensus 22 ~~v~c~~-~~l~~ip~~~---~~~L~~L~Ls~n-~---i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGI---PTNAQILYLHDN-Q---ITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TEEECTT-SCCSSCCSCC---CTTCSEEECCSS-C---CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEeEccC-CCcCccCCCC---CCCCCEEEcCCC-c---cCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 4566653 3356666542 367888888888 4 4444 55666776 888888888888887763 577888888
Q ss_pred EccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecccccccccccccccccccEEEEee
Q 039821 343 LNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHI 422 (555)
Q Consensus 343 L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 422 (555)
|++++| .+..+|.. .|..+++|+.|+++++ .++.++... ..+++|+.|++++
T Consensus 93 L~Ls~N-~l~~l~~~----------------~~~~l~~L~~L~Ls~N-~l~~lp~~~----------~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 93 LDLGTN-QLTVLPSA----------------VFDRLVHLKELFMCCN-KLTELPRGI----------ERLTHLTHLALDQ 144 (229)
T ss_dssp EECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSS-CCCSCCTTG----------GGCTTCSEEECCS
T ss_pred EECCCC-cCCccChh----------------HhCcchhhCeEeccCC-cccccCccc----------ccCCCCCEEECCC
Confidence 888888 56666654 3456677777777665 233332222 2566777777776
Q ss_pred cCCCCccc--ccccCCCCceEEeecCC
Q 039821 423 CQKLKDTT--FLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 423 ~~~l~~~~--~l~~l~~L~~L~l~~~~ 447 (555)
| .++.++ .+..+++|+.|++++|+
T Consensus 145 N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 145 N-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred C-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6 344433 35566677777776664
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=3.1e-11 Score=110.88 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=86.7
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC---CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGK 299 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (555)
+.+.+..+..+|.. -...++.|.+.++.+..++. +..+++|+.|+++++. +..+++..|..+++|++|++++| .
T Consensus 16 l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-C
T ss_pred eEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-c
Confidence 34444444444432 23455677777777666532 3567777777777443 56666655677777777777777 4
Q ss_pred CccccccChh-HhhhhccccEEEcCCCCCccc-chhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCC
Q 039821 300 SWSNFQLPVG-MSELGSSLELLDISHTSIREL-PEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFAD 377 (555)
Q Consensus 300 ~~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~ 377 (555)
+..+|.. +..+. +|++|++++|.+..+ |..+..+++|++|++++| .+..+++. .|..
T Consensus 93 ---l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~ 151 (220)
T 2v70_A 93 ---LENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG----------------AFDT 151 (220)
T ss_dssp ---CCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT----------------TTTT
T ss_pred ---cCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH----------------HhcC
Confidence 4555443 55665 777777777777766 345667777777777777 45555432 3455
Q ss_pred Cccccccccccc
Q 039821 378 LNHLNELWIDRA 389 (555)
Q Consensus 378 l~~L~~L~l~~~ 389 (555)
+++|+.|+++++
T Consensus 152 l~~L~~L~L~~N 163 (220)
T 2v70_A 152 LHSLSTLNLLAN 163 (220)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEEecCc
Confidence 566666666554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=2.8e-11 Score=111.16 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=51.9
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhcc-chhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEE
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMI-ADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLD 321 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~ 321 (555)
.+++.++.+..+|.. -...++.|+++++. +..+ +...|..+++|++|++++| . +..++. .+..+. +|++|+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~---i~~i~~~~~~~l~-~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-K---ITDIEEGAFEGAS-GVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-C---CCEECTTTTTTCT-TCCEEE
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-c---CCEECHHHhCCCC-CCCEEE
Confidence 455555555554432 12334556655443 3333 2333555556666666555 3 344433 445554 566666
Q ss_pred cCCCCCcccch-hhhCCCCCcEEccCCCcccccc
Q 039821 322 ISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKI 354 (555)
Q Consensus 322 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l 354 (555)
+++|.+..+|. .+..+++|++|++++| .+..+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 120 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSN-RITCV 120 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCB
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCC-cCCeE
Confidence 66665555544 2555555666666555 34444
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.6e-11 Score=106.34 Aligned_cols=126 Identities=25% Similarity=0.255 Sum_probs=103.0
Q ss_pred cceeEeeccccccc--cccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccc-cChhHhhhhc
Q 039821 240 ENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQ-LPVGMSELGS 315 (555)
Q Consensus 240 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-lp~~~~~l~~ 315 (555)
.+++.|++.++.+. .++.. ..+++|++|++.+|. +..+ ..+..+++|++|++++| . +.. +|..+..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N-~---l~~~~~~~~~~l~- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSEN-R---IFGGLDMLAEKLP- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESC-C---CCSCCCHHHHHCT-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCC-c---CchHHHHHHhhCC-
Confidence 57999999999887 67665 788999999999765 6666 44888999999999999 4 555 777777787
Q ss_pred cccEEEcCCCCCcccc--hhhhCCCCCcEEccCCCccccccch---HHHhccccccccccCccccCCCcccccccccccc
Q 039821 316 SLELLDISHTSIRELP--EELKKLVNLKCLNLRRTELLNKIPR---QLISNSSRDTTSVIDATAFADLNHLNELWIDRAK 390 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~ 390 (555)
+|++|++++|.++.+| ..+..+++|++|++++| .+..+|. . .+..+++|++|++.+|.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~----------------~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRES----------------VFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHH----------------HHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHH----------------HHHhCccCcEecCCCCC
Confidence 9999999999999987 67899999999999999 5677775 2 24667788888877764
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=4.1e-13 Score=140.96 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=128.2
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC----------ccccccChhHhhhhccccEEE-cCCCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS----------WSNFQLPVGMSELGSSLELLD-ISHTSI 327 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~lp~~~~~l~~~L~~L~-l~~~~i 327 (555)
..+++|+.|+++++. ++.+|.. +..+++|+.|+++++... ......|..++.+. +|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHH
T ss_pred ccCccceeccCChhh-HHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhccc
Confidence 567788888888554 6777766 777888888887655200 00334566777777 888887 555554
Q ss_pred cccch------hhhC--CCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccceeeecc
Q 039821 328 RELPE------ELKK--LVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELELLKIDY 399 (555)
Q Consensus 328 ~~lp~------~i~~--L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 399 (555)
..++. .+.. ...|++|++++| .+..+|. ++.+++|+.|+++++ .++.+|...
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~------------------~~~l~~L~~L~Ls~N-~l~~lp~~~ 482 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH------------------LEQLLLVTHLDLSHN-RLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC------------------GGGGTTCCEEECCSS-CCCCCCGGG
T ss_pred chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC------------------ccccccCcEeecCcc-cccccchhh
Confidence 44442 1221 135788888888 5666764 355667777777776 333443322
Q ss_pred cccccccccccccccccEEEEeecCCCCcccccccCCCCceEEeecCCcchhh-hccCcccccccccCCCCCCcccceee
Q 039821 400 TEIVRKRREPFVFRSLHCVTIHICQKLKDTTFLVFAPNLKSLSLFHCGAMEEI-ISVGKFAEVPEMMGHISPFENLRLLR 478 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~L~~L~ 478 (555)
..+++|+.|++++| .++.+|.++.+++|++|++++|...... |. .++.+++|+.|+
T Consensus 483 ----------~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~------------~l~~l~~L~~L~ 539 (567)
T 1dce_A 483 ----------AALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRLQQSAAIQ------------PLVSCPRLVLLN 539 (567)
T ss_dssp ----------GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCCSSSTTG------------GGGGCTTCCEEE
T ss_pred ----------hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCCCCCCCcH------------HHhcCCCCCEEE
Confidence 37888888888887 5566778888888888888887432221 22 567788888888
Q ss_pred cCccccccccccccc----CCCCcceEE
Q 039821 479 LSHLPNLKSIYWKPL----PFTHLKEMV 502 (555)
Q Consensus 479 l~~~~~L~~l~~~~~----~~~~L~~L~ 502 (555)
++++ .+..+|.... .+|+|+.|+
T Consensus 540 L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 540 LQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 8885 5666554322 267777775
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=4.5e-11 Score=118.75 Aligned_cols=173 Identities=23% Similarity=0.308 Sum_probs=129.1
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccCC--C-CCCcceEEEcccCcchhccchhHhccCCcccEEEecCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSEV--P-TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 297 (555)
..+.+.+..+..+|.. -...++.|+++++.+..++.. . .+++|++|+++++ .+..+++..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 3455666667777653 235689999999999887654 4 8999999999965 478888777999999999999999
Q ss_pred CCCccccccCh-hHhhhhccccEEEcCCCCCcccc-hhhhCCCCCcEEccCCCccccccchHHHhccccccccccCcccc
Q 039821 298 GKSWSNFQLPV-GMSELGSSLELLDISHTSIRELP-EELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAF 375 (555)
Q Consensus 298 ~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l 375 (555)
. +..+|. .+..+. +|++|+|++|.+..++ ..+..+++|++|++++| .+..+|...+. .+
T Consensus 99 -~---l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-------------~~ 159 (361)
T 2xot_A 99 -H---LHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIK-------------DG 159 (361)
T ss_dssp -C---CCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC---------------
T ss_pred -c---CCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhc-------------Cc
Confidence 5 667765 467787 9999999999999885 57999999999999999 68888875221 11
Q ss_pred CCCccccccccccccccceeeeccccccccccccccccc--ccEEEEeecC
Q 039821 376 ADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRS--LHCVTIHICQ 424 (555)
Q Consensus 376 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~ 424 (555)
..+++|+.|+++++ .++.++..... .++. |+.|++.+|+
T Consensus 160 ~~l~~L~~L~L~~N-~l~~l~~~~~~---------~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 160 NKLPKLMLLDLSSN-KLKKLPLTDLQ---------KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --CTTCCEEECCSS-CCCCCCHHHHH---------HSCHHHHTTEECCSSC
T ss_pred ccCCcCCEEECCCC-CCCccCHHHhh---------hccHhhcceEEecCCC
Confidence 46788888888876 44444432211 3444 4778888764
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=4.8e-12 Score=137.03 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=75.0
Q ss_pred cceeEeeccccccccccCC-CCCCcceEEEccc----CcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhh
Q 039821 240 ENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDF----NEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELG 314 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~ 314 (555)
.++++|.+.++.+...+.. .....|+.+.+.. ++.+ .+++..+..+.+|++|+|++| . +..+|..++.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n-~---l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNL-Q---IFNISANIFKYD 247 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-C---CSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCC-C---CCCCChhhcCCC
Confidence 4577777766655543221 2223333333322 1112 244555777888888888888 5 667888888887
Q ss_pred ccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccccccce
Q 039821 315 SSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAKELEL 394 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~ 394 (555)
+|++|+|++|.+..+|..++.|++|++|+|++| .+..+|.. ++++++|++|+|+++ .+..
T Consensus 248 -~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-----------------~~~l~~L~~L~L~~N-~l~~ 307 (727)
T 4b8c_D 248 -FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-----------------LGSCFQLKYFYFFDN-MVTT 307 (727)
T ss_dssp -SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-----------------GGGGTTCSEEECCSS-CCCC
T ss_pred -CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-----------------hcCCCCCCEEECCCC-CCCc
Confidence 888888888888888888888888888888888 46677763 455566666666655 2333
Q ss_pred eeecccccccccccccccccccEEEEeecC
Q 039821 395 LKIDYTEIVRKRREPFVFRSLHCVTIHICQ 424 (555)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 424 (555)
++... ..+++|+.|+|++|.
T Consensus 308 lp~~~----------~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 308 LPWEF----------GNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSST----------TSCTTCCCEECTTSC
T ss_pred cChhh----------hcCCCccEEeCCCCc
Confidence 33222 256666666666663
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=9.8e-11 Score=100.32 Aligned_cols=108 Identities=26% Similarity=0.265 Sum_probs=92.0
Q ss_pred cceeEeeccccccc--cccCC-CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccc-cChhHhhhhc
Q 039821 240 ENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQ-LPVGMSELGS 315 (555)
Q Consensus 240 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-lp~~~~~l~~ 315 (555)
.+++.|++.++.+. .++.. ..+++|+.|++++|. +..+ ..+..+++|++|++++| . +.. +|..+..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n-~---i~~~~~~~~~~l~- 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDN-R---VSGGLEVLAEKCP- 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSS-C---CCSCTHHHHHHCT-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCC-c---ccchHHHHhhhCC-
Confidence 68999999999887 66655 889999999999764 6666 44889999999999999 5 555 777777787
Q ss_pred cccEEEcCCCCCcccc--hhhhCCCCCcEEccCCCccccccch
Q 039821 316 SLELLDISHTSIRELP--EELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 316 ~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
+|++|++++|.+..+| ..++.+++|++|++++| .+..+|.
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 9999999999999976 68999999999999999 6777775
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=3.4e-11 Score=106.40 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=101.4
Q ss_pred cCccceeEeeccccccccccCCCCCC-cceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH-hhhh
Q 039821 237 KGWENVRRLSLMQNQIETLSEVPTCP-HLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM-SELG 314 (555)
Q Consensus 237 ~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~-~~l~ 314 (555)
....+++.|++.++.+..++....+. +|+.|+++++. +..+ ..+..+++|++|++++| . +..+|+.+ ..++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N-~---l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNN-R---ICRIGEGLDQALP 88 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSS-C---CCEECSCHHHHCT
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCC-c---ccccCcchhhcCC
Confidence 34568899999999988887766555 99999999664 6555 23888999999999999 6 77777665 7787
Q ss_pred ccccEEEcCCCCCcccch--hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccccccccccc
Q 039821 315 SSLELLDISHTSIRELPE--ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAK 390 (555)
Q Consensus 315 ~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~ 390 (555)
+|++|++++|.+..+|. .++.+++|++|++++| .+..+|..... .+..+++|+.|+++++.
T Consensus 89 -~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~-------------~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 -DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLY-------------VIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHH-------------HHHHCTTCSEETTEECC
T ss_pred -CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHH-------------HHHHCCccceeCCCcCC
Confidence 99999999999999987 7889999999999999 46667652000 13456677777766653
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=3.3e-11 Score=130.51 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=77.1
Q ss_pred CCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCC
Q 039821 259 PTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLV 338 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~ 338 (555)
..+..|+.|+++++. +..++... ..+++|++|+|++| . +..+|..++.+. +|++|+|++|.|+.+|..++.|+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N-~---l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNISANI-FKYDFLTRLYLNGN-S---LTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCCGGG-GGCCSCSCCBCTTS-C---CSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGT
T ss_pred ccCCCCcEEECCCCC-CCCCChhh-cCCCCCCEEEeeCC-c---CcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCC
Confidence 567778888887554 55666653 36778888888877 4 557777777777 88888888888888887788888
Q ss_pred CCcEEccCCCccccccchHHHhccccccccccCccccCCCcccccccccccc
Q 039821 339 NLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRAK 390 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~~ 390 (555)
+|++|+|++| .+..+|.. |+.+++|+.|+|+++.
T Consensus 294 ~L~~L~L~~N-~l~~lp~~-----------------~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWE-----------------FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TCSEEECCSS-CCCCCCSS-----------------TTSCTTCCCEECTTSC
T ss_pred CCCEEECCCC-CCCccChh-----------------hhcCCCccEEeCCCCc
Confidence 8888888887 56777763 4566666667666653
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=6.1e-10 Score=97.43 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=103.5
Q ss_pred EEEEcCCCCC--CCCCc-cCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 222 FLVCAGAGLN--EAPDV-KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 222 ~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
.+...+..+. .++.. ....+++.|++.++.+..+.....+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N- 105 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN- 105 (168)
T ss_dssp EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-
T ss_pred EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-
Confidence 3444444444 45544 6678999999999999888777899999999999765 55544555778999999999999
Q ss_pred CCccccccC--hhHhhhhccccEEEcCCCCCcccch----hhhCCCCCcEEccCCCccccccch
Q 039821 299 KSWSNFQLP--VGMSELGSSLELLDISHTSIRELPE----ELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 299 ~~~~~~~lp--~~~~~l~~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
. +..+| ..+..+. +|++|++++|.+..+|. .+..+++|++|++++| ....+|.
T Consensus 106 ~---l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 106 K---LKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp S---CCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred c---cCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 6 77765 6788887 99999999999999987 7899999999999999 5666665
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=5.2e-10 Score=100.24 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=32.1
Q ss_pred CcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccch
Q 039821 287 PSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
++|++|++++| . +..+|..+..+. +|++|++++|.++.++. .+..+++|++|++++| .+..+|+
T Consensus 31 ~~l~~L~L~~n-~---i~~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~ 95 (193)
T 2wfh_A 31 RDVTELYLDGN-Q---FTLVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPP 95 (193)
T ss_dssp TTCCEEECCSS-C---CCSCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred CCCCEEECCCC-c---CchhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCH
Confidence 34555555555 3 444555555554 55555555555555543 3455555555555555 3444443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=5.7e-10 Score=98.49 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=103.4
Q ss_pred EEEEcCCCCCCCCCccCcc-ceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 222 FLVCAGAGLNEAPDVKGWE-NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
.+...+..+..++...... +++.|+++++.+..++.+..+++|++|++++|. +..+++..+..+++|++|++++| .
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~- 99 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-S- 99 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-C-
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-c-
Confidence 3444555566666555555 899999999999998888999999999999665 77888777799999999999999 6
Q ss_pred ccccccCh--hHhhhhccccEEEcCCCCCcccchh----hhCCCCCcEEccCCCc
Q 039821 301 WSNFQLPV--GMSELGSSLELLDISHTSIRELPEE----LKKLVNLKCLNLRRTE 349 (555)
Q Consensus 301 ~~~~~lp~--~~~~l~~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~ 349 (555)
+..+|. .+..+. +|++|++++|.+..+|.. +..+++|++||+++|.
T Consensus 100 --i~~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 100 --LVELGDLDPLASLK-SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --CCCGGGGGGGGGCT-TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --CCcchhhHhhhcCC-CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777876 788887 999999999999999985 8999999999999984
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.4e-09 Score=97.49 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=90.7
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccC-hhHhhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLP-VGMSELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~~L~~L~ 321 (555)
+.+++.++.+..++.. -.++|++|++.++. +..++. .|..+++|++|++++| . +..++ ..+..+. +|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~-i~~ip~-~~~~l~~L~~L~Ls~N-~---i~~i~~~~f~~l~-~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQ-FTLVPK-ELSNYKHLTLIDLSNN-R---ISTLSNQSFSNMT-QLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSC-CCSCCG-GGGGCTTCCEEECCSS-C---CCCCCTTTTTTCT-TCCEEE
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCc-CchhHH-HhhcccCCCEEECCCC-c---CCEeCHhHccCCC-CCCEEE
Confidence 3466666666666543 23678889988554 667774 5888999999999988 5 66665 4577787 999999
Q ss_pred cCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 322 ISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 322 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
+++|.+..+|. .+..+++|++|++++| .+..+|.. .|..+++|+.|+++++
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG----------------AFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT----------------TTTTCTTCCEEECCSS
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChh----------------hhhcCccccEEEeCCC
Confidence 99999998876 6888999999999998 67777764 3456667777766654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.2e-09 Score=96.47 Aligned_cols=106 Identities=23% Similarity=0.372 Sum_probs=69.2
Q ss_pred EeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-HhhhhccccEEEc
Q 039821 244 RLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSLELLDI 322 (555)
Q Consensus 244 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L~~L~l 322 (555)
.+.+.++.+..++. .-.++|++|+++++. +..++...+..+++|++|++++| . +..+|.. +..+. +|++|++
T Consensus 11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~---l~~~~~~~~~~l~-~L~~L~l 83 (177)
T 2o6r_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-Q---IQSLPDGVFDKLT-KLTILYL 83 (177)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-C---CCCCCTTTTTTCT-TCCEEEC
T ss_pred EEEecCCCCccCCC-CCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-c---ceEeChhHccCCC-ccCEEEC
Confidence 44555555555442 223577777777544 55666666677777777777777 4 5566544 45665 7777777
Q ss_pred CCCCCcccchh-hhCCCCCcEEccCCCccccccchH
Q 039821 323 SHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPRQ 357 (555)
Q Consensus 323 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~ 357 (555)
++|.++.+|.. +..+++|++|++++| .+..+|..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 118 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG 118 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHH
Confidence 77777777664 567777777777777 56666654
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=8.8e-10 Score=98.71 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=85.7
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchh-HhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADG-FFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELL 320 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L 320 (555)
+.+++.++.+..++... ..++++|++.++. +..++.. .|..+++|++|++++| . +..+ |..+..+. +|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-~---l~~~~~~~~~~l~-~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-Q---LTGIEPNAFEGAS-HIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-C---CCCBCTTTTTTCT-TCCEE
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-C---CCCcCHhHcCCcc-cCCEE
Confidence 45667777666665532 2378888888554 5666543 4778888888888888 4 5555 66777777 88888
Q ss_pred EcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 321 DISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 321 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
++++|.+..++. .+..+++|++|++++| .+..+++. .+..+++|++|+++++
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPG----------------SFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTT----------------SSTTCTTCCEEECTTC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHH----------------HhhcCCCCCEEEeCCC
Confidence 888888888776 4778888888888888 45555432 3556666777766655
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=2.5e-11 Score=109.53 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=63.2
Q ss_pred ccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCcccc
Q 039821 303 NFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLN 382 (555)
Q Consensus 303 ~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~ 382 (555)
+..+|..+..+. +|++|++++|.+..+| .+..+++|++|++++| .+..+|.. +..+++|+
T Consensus 37 l~~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-----------------~~~~~~L~ 96 (198)
T 1ds9_A 37 IEKMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-----------------DAVADTLE 96 (198)
T ss_dssp CCCCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-----------------HHHHHHCS
T ss_pred HhhhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-----------------hhcCCcCC
Confidence 344444555555 6666666666666665 5556666666666665 34455542 12234455
Q ss_pred ccccccccccceeeecccccccccccccccccccEEEEeecCCCCccc---ccccCCCCceEEeecCCcchh
Q 039821 383 ELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQKLKDTT---FLVFAPNLKSLSLFHCGAMEE 451 (555)
Q Consensus 383 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~~L~l~~~~~~~~ 451 (555)
.|+++++ .++.++ . ...+++|+.|++++| .++.++ .+..+++|++|++++|+....
T Consensus 97 ~L~L~~N-~l~~l~-~----------~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 97 ELWISYN-QIASLS-G----------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEEEE-ECCCHH-H----------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECcCC-cCCcCC-c----------cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 5555444 222221 1 115667777777766 333322 466777888888877754333
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=3.4e-09 Score=90.55 Aligned_cols=120 Identities=23% Similarity=0.243 Sum_probs=95.8
Q ss_pred EEEEcCCCCC--CCCCc-cCccceeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCC
Q 039821 222 FLVCAGAGLN--EAPDV-KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCG 298 (555)
Q Consensus 222 ~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 298 (555)
.+...+.... .++.. ....+++.|++.++.+..+.....+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N- 98 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGN- 98 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTS-
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCC-
Confidence 3444444444 44433 5678999999999999888777899999999999765 55534445778999999999999
Q ss_pred CCccccccC--hhHhhhhccccEEEcCCCCCcccch----hhhCCCCCcEEccCC
Q 039821 299 KSWSNFQLP--VGMSELGSSLELLDISHTSIRELPE----ELKKLVNLKCLNLRR 347 (555)
Q Consensus 299 ~~~~~~~lp--~~~~~l~~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~ 347 (555)
. +..+| ..++.++ +|++|++++|.+..+|. .++.+++|++|++++
T Consensus 99 ~---i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 99 K---IKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp C---CCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred c---CCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 5 66654 7788888 99999999999999986 688999999999863
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=3.2e-09 Score=95.00 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=100.9
Q ss_pred cEEEEcCCCCCCCCCccCccceeEeeccccccccccC---CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCC
Q 039821 221 NFLVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNC 297 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 297 (555)
..+.+.+..+..+|... ..+++.|.+.++.+..++. +..+++|++|+++++. +..+++..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence 34555566666666533 3489999999999988765 5789999999999664 77776667999999999999999
Q ss_pred CCCccccccCh-hHhhhhccccEEEcCCCCCccc-chhhhCCCCCcEEccCCCccccc
Q 039821 298 GKSWSNFQLPV-GMSELGSSLELLDISHTSIREL-PEELKKLVNLKCLNLRRTELLNK 353 (555)
Q Consensus 298 ~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~ 353 (555)
. +..++. .+..+. +|++|++++|.+..+ |..+..+++|++|++++|.....
T Consensus 89 -~---l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 -K---IKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp -C---CCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred -c---CCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 5 666654 477887 999999999999987 55789999999999999954333
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.89 E-value=7.4e-09 Score=91.32 Aligned_cols=126 Identities=24% Similarity=0.420 Sum_probs=100.7
Q ss_pred EEEcCCCCCCCCCccCccceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCC
Q 039821 223 LVCAGAGLNEAPDVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKS 300 (555)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (555)
+.+.+..+..+|. ....+++.|.+.++.+..++. +..+++|++|++.++ .+..+++..+..+++|++|++++| .
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~- 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-K- 87 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C-
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-C-
Confidence 4445555555553 234689999999999888765 478999999999966 477888887899999999999999 5
Q ss_pred ccccccChh-HhhhhccccEEEcCCCCCcccchh-hhCCCCCcEEccCCCccccccc
Q 039821 301 WSNFQLPVG-MSELGSSLELLDISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIP 355 (555)
Q Consensus 301 ~~~~~lp~~-~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 355 (555)
+..+|.. +..+. +|++|++++|.+..+|.. +..+++|++|++++|+.....|
T Consensus 88 --l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 --LQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --CCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6677765 56777 999999999999999986 5789999999999995433333
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=4.9e-11 Score=107.63 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=36.8
Q ss_pred hccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCCCCcEEccCCCccccccc
Q 039821 283 FQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLVNLKCLNLRRTELLNKIP 355 (555)
Q Consensus 283 ~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 355 (555)
+..+++|++|++++| . +..+| .+..+. +|++|++++|.+..+|..+..+++|++|++++| .+..+|
T Consensus 44 ~~~l~~L~~L~ls~n-~---l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-N---IEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp HHHTTTCSEEECSEE-E---ESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred HhcCCCCCEEECCCC-C---Ccccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC
Confidence 455555666666555 3 44455 555555 666666666655555555555555666666555 344444
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=8.4e-09 Score=90.57 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=86.7
Q ss_pred eEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH-hhhhccccEEE
Q 039821 243 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM-SELGSSLELLD 321 (555)
Q Consensus 243 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~-~~l~~~L~~L~ 321 (555)
+.+++.++.+..+|..- .++|+.|+++++. +..+++..|..+++|++|++++| . +..+|..+ ..+. +|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~---l~~i~~~~~~~l~-~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-K---LTAIPTGVFDKLT-QLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C---CCCCCTTTTTTCT-TCCEEE
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-C---CCccChhHhCCcc-hhhEEE
Confidence 46777777777776532 3889999999654 77887777899999999999999 6 78888764 6787 999999
Q ss_pred cCCCCCcccchh-hhCCCCCcEEccCCCccccccch
Q 039821 322 ISHTSIRELPEE-LKKLVNLKCLNLRRTELLNKIPR 356 (555)
Q Consensus 322 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 356 (555)
+++|.+..+|.. +..+++|++|++++|+ +...+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 999999999985 8899999999999994 454443
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.2e-08 Score=99.81 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=103.6
Q ss_pred hhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCccccccchHHHhccccc-cccccCcc-----------ccCCCc
Q 039821 313 LGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTELLNKIPRQLISNSSRD-TTSVIDAT-----------AFADLN 379 (555)
Q Consensus 313 l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L~~~~~~-----------~l~~l~ 379 (555)
+. +|+.|++.+ +++.++. .+..+++|+.+++.++ .+..++..++.....+ .+...... .|.++.
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 45 777887777 7777766 5677778888888777 4556665545444333 22221100 111222
Q ss_pred ccc-cccccccc--------------ccceeeecccccc-cccccccccccccEEEEeecCCCCccc--ccccCCCCceE
Q 039821 380 HLN-ELWIDRAK--------------ELELLKIDYTEIV-RKRREPFVFRSLHCVTIHICQKLKDTT--FLVFAPNLKSL 441 (555)
Q Consensus 380 ~L~-~L~l~~~~--------------~l~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L 441 (555)
.|+ .+.+.... .+..+.....-.. ........+++|+.|++.++ .++.++ .+.++++|++|
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEE
Confidence 222 11111100 1111111000000 00000002688999999887 466555 57889999999
Q ss_pred EeecCCcchhhhccCcccccccccCCCCCCcccc-eeecCcccccccccc-cccCCCCcceEEEcCCCCCCccCCC
Q 039821 442 SLFHCGAMEEIISVGKFAEVPEMMGHISPFENLR-LLRLSHLPNLKSIYW-KPLPFTHLKEMVVRGCDQLEKLPLD 515 (555)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~-~L~l~~~~~L~~l~~-~~~~~~~L~~L~l~~C~~L~~lp~~ 515 (555)
++.++ ++.+.. ..+.++++|+ .+.+.+ +++.++. .+..+++|+.+++.+ .+++.++..
T Consensus 256 ~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 256 KLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDE 315 (329)
T ss_dssp ECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTT
T ss_pred ECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchh
Confidence 99886 555543 2677888999 999987 6777754 345678888888855 467777663
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=1.8e-08 Score=88.11 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=83.9
Q ss_pred eeEeeccccccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhH-hhhhccccEE
Q 039821 242 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGM-SELGSSLELL 320 (555)
Q Consensus 242 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~-~~l~~~L~~L 320 (555)
.+.+++.++.+..++... .++|++|+++++ .+..+++..|..+++|++|++++| . +..+|... ..+. +|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~---l~~l~~~~f~~l~-~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-Q---LTVLPAGVFDKLT-QLTQL 83 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-C---CCCCCTTTTTTCT-TCCEE
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-C---cCccChhhccCCC-CCCEE
Confidence 356778888887776533 488999999965 477887777899999999999999 6 77887764 6777 99999
Q ss_pred EcCCCCCcccch-hhhCCCCCcEEccCCCc
Q 039821 321 DISHTSIRELPE-ELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 321 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 349 (555)
++++|.++.+|. .+..+++|++|++++|+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999999988 48899999999999994
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.7e-08 Score=97.29 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=107.0
Q ss_pred CCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChh-HhhhhccccEEEcCCCC-------------
Q 039821 261 CPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVG-MSELGSSLELLDISHTS------------- 326 (555)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~~L~~L~l~~~~------------- 326 (555)
+++|+.+.+.. .+..++..+|.++.+|+.|++..+ . +..+++. +.... ++.++......
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~---i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-T---APNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-S---CCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-C---ccccchhhhcCCC-ceEEecCcchhhhhcccccccccc
Confidence 78888888874 577788888888888888888877 3 3333322 22332 44444433310
Q ss_pred -----C---------cccch---------------------------hh-hCCCCCcEEccCCCccccccchHHHhcccc
Q 039821 327 -----I---------RELPE---------------------------EL-KKLVNLKCLNLRRTELLNKIPRQLISNSSR 364 (555)
Q Consensus 327 -----i---------~~lp~---------------------------~i-~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~ 364 (555)
+ ..++. .+ ..+++|+.+++++| .+..+|..
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~------- 244 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF------- 244 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-------
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-------
Confidence 0 00111 00 12678999999987 57888876
Q ss_pred ccccccCccccCCCccccccccccccccceeeeccccccccccccccccccc-EEEEeecCCCCccc--ccccCCCCceE
Q 039821 365 DTTSVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRSLH-CVTIHICQKLKDTT--FLVFAPNLKSL 441 (555)
Q Consensus 365 L~L~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~--~l~~l~~L~~L 441 (555)
.|.++++|+.+.+.+. ++.++...- ..+.+|+ .+.+.. .++.++ .+.++++|+.+
T Consensus 245 ---------aF~~~~~L~~l~l~~n--i~~I~~~aF---------~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 245 ---------TFAQKKYLLKIKLPHN--LKTIGQRVF---------SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp ---------TTTTCTTCCEEECCTT--CCEECTTTT---------TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred ---------hhhCCCCCCEEECCcc--cceehHHHh---------hCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 4677788888887664 554443321 1577788 888876 455543 67788999999
Q ss_pred EeecCCcchhhhccCcccccccccCCCCCCcccceeec
Q 039821 442 SLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRL 479 (555)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 479 (555)
++.++. +..+.. ..+.++++|+.+..
T Consensus 303 ~l~~n~-i~~I~~-----------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDK-ITTLGD-----------ELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSC-CCEECT-----------TTTCTTCCCCEEEC
T ss_pred EeCCCc-cCccch-----------hhhcCCcchhhhcc
Confidence 987653 333322 25777888888764
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=2.2e-08 Score=87.83 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=77.4
Q ss_pred eEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcCCCCCcccchh-hhCCCCCcE
Q 039821 265 LTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDISHTSIRELPEE-LKKLVNLKC 342 (555)
Q Consensus 265 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~~ 342 (555)
+.++++++ .+..+|... .++|++|++++| . +..+ |..+..+. +|++|+|++|+++.+|.. +..+++|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N-~---l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNN-Q---ITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSS-C---CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCC-C---ccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhE
Confidence 57777744 467777653 378999999999 5 6666 56678887 999999999999999885 578999999
Q ss_pred EccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 343 LNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 343 L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
|++++| .+..+|.. .|..+++|+.|+++++
T Consensus 86 L~L~~N-~l~~l~~~----------------~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRG----------------AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EECCSS-CCCCCCTT----------------TTTTCTTCSEEECCSS
T ss_pred EECCCC-ccceeCHH----------------HhccccCCCEEEeCCC
Confidence 999999 67888874 2566777777777665
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=2.9e-08 Score=86.79 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=75.9
Q ss_pred ceEEEcccCcchhccchhHhccCCcccEEEecCCCCCcccccc-ChhHhhhhccccEEEcCCCCCcccchh-hhCCCCCc
Q 039821 264 LLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQL-PVGMSELGSSLELLDISHTSIRELPEE-LKKLVNLK 341 (555)
Q Consensus 264 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~~L~~L~l~~~~i~~lp~~-i~~L~~L~ 341 (555)
.++++++++ .+..+|... .++|++|++++| . +..+ |..+..+. +|++|++++|.++.+|.. +..+++|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N-~---i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI---PTTTQVLYLYDN-Q---ITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCSEEECCSS-C---CCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCC-CcCccCccC---CCCCcEEEcCCC-c---CCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCC
Confidence 467888754 467777653 378899999998 5 6666 55677887 999999999999998875 57899999
Q ss_pred EEccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 342 CLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 342 ~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
+|++++| .+..+|.. .|..+++|+.|+++++
T Consensus 82 ~L~L~~N-~l~~~~~~----------------~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 82 QLSLNDN-QLKSIPRG----------------AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSS
T ss_pred EEECCCC-ccCEeCHH----------------HhcCCCCCCEEEeCCC
Confidence 9999998 67778764 3556677777776655
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=1.5e-06 Score=86.97 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=122.0
Q ss_pred cceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEcCCCCCcccchhhhCCCCCc
Q 039821 263 HLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDISHTSIRELPEELKKLVNLK 341 (555)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~~L~ 341 (555)
+|+.+.+..+ +..+...+|.+. +|+.+.+..+ +..++. .+..+. +|+.+++.+++++.+|...-...+|+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~~-----l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPST-----LEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCTT-----CCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCCC-----ccEehHHHhhCcc-cCCeeecCCCcceEechhhEeecccC
Confidence 5666666532 566666666663 5777777653 444443 344454 77777777777777766433356777
Q ss_pred EEccCCCccccccchHHHhccccc-cccc------cCccccCCCccccccccccccccceeeeccccccccccccccccc
Q 039821 342 CLNLRRTELLNKIPRQLISNSSRD-TTSV------IDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFVFRS 414 (555)
Q Consensus 342 ~L~l~~~~~l~~lp~~~i~~l~~L-~L~~------~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (555)
.+.+..+ +..++..++..+.+| .+.+ .+...|.+ .+|+.+.+.+ .++.++... ...+++
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~a---------F~~c~~ 272 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRA---------FYYCPE 272 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTT---------TTTCTT
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhH---------hhCCCC
Confidence 7777643 566665544443333 1111 11113333 4455554422 222222111 125677
Q ss_pred ccEEEEeecCCC----Cccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc
Q 039821 415 LHCVTIHICQKL----KDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI 488 (555)
Q Consensus 415 L~~L~l~~~~~l----~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l 488 (555)
|+.+.+.++... ..++ .+.++++|+.+.+.+. ++.+.. ..+.++.+|+.+.|.. +++.+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I 337 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-----------GLLGGNRKVTQLTIPA--NVTQI 337 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCCSCCEEEECT--TCCEE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-----------hhhcCCCCccEEEECc--cccEE
Confidence 888877665321 1122 4567788888887632 333322 2566778888888854 46666
Q ss_pred ccc-ccCCCCcceEEEcCCCCCCccCCCC-Ccc--cccceEEe
Q 039821 489 YWK-PLPFTHLKEMVVRGCDQLEKLPLDS-NSA--KERKFVIR 527 (555)
Q Consensus 489 ~~~-~~~~~~L~~L~l~~C~~L~~lp~~~-~~~--~L~~l~i~ 527 (555)
... ...+ +|+.+.+.+. .+..++... ..+ .+..+.+-
T Consensus 338 ~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred cHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 543 3345 7888888774 444444332 222 25666665
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=5.2e-07 Score=90.31 Aligned_cols=228 Identities=11% Similarity=0.131 Sum_probs=154.6
Q ss_pred CCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccch-hhhCCC
Q 039821 260 TCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPE-ELKKLV 338 (555)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~ 338 (555)
.+..++.+.+.. .+..++..+|... +|+.+.+..+ +..++.....-. +|+.+.+.. .++.++. .+..+.
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT
T ss_pred ecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc
Confidence 346777777763 3778888888885 7999999876 666766555445 899999986 7888876 688899
Q ss_pred CCcEEccCCCccccccchHHHhccccc-cc------cccCccccCCCccccccccccccccceeeecccccccccccccc
Q 039821 339 NLKCLNLRRTELLNKIPRQLISNSSRD-TT------SVIDATAFADLNHLNELWIDRAKELELLKIDYTEIVRKRREPFV 411 (555)
Q Consensus 339 ~L~~L~l~~~~~l~~lp~~~i~~l~~L-~L------~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (555)
+|+.+++.++ .+..+|...+. ...| .+ ...+...|.++++|+.+.+.. .++.+.... +.
T Consensus 181 ~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~a----------F~ 246 (401)
T 4fdw_A 181 NLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEA----------FR 246 (401)
T ss_dssp TCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT--TCCEECTTT----------TT
T ss_pred cCCeeecCCC-cceEechhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCC--CccCccccc----------cc
Confidence 9999999988 68888887554 3445 22 222333567777888777764 233333222 13
Q ss_pred cccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcc----hhhhccCcccccccccCCCCCCcccceeecCccccc
Q 039821 412 FRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAM----EEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNL 485 (555)
Q Consensus 412 ~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L 485 (555)
-.+|+.+.+.. .++.++ .+.++++|+.+.+.++... ..+.. ..+.+|++|+.+.+.+ ++
T Consensus 247 ~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----------~aF~~c~~L~~l~l~~--~i 311 (401)
T 4fdw_A 247 ESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----------YCLEGCPKLARFEIPE--SI 311 (401)
T ss_dssp TCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----------TTTTTCTTCCEECCCT--TC
T ss_pred cCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-----------HHhhCCccCCeEEeCC--ce
Confidence 36899999954 455543 6778999999999876432 11211 2677899999999984 57
Q ss_pred cccccc-ccCCCCcceEEEcCCCCCCccCCCCC-cccccceEEec
Q 039821 486 KSIYWK-PLPFTHLKEMVVRGCDQLEKLPLDSN-SAKERKFVIRG 528 (555)
Q Consensus 486 ~~l~~~-~~~~~~L~~L~l~~C~~L~~lp~~~~-~~~L~~l~i~~ 528 (555)
+.++.. ...+++|+.+.+.. +++.++...- ...|+.+.+.+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred EEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence 777653 34468889888843 4666654322 22466776664
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=2.8e-07 Score=90.68 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=81.6
Q ss_pred eecccc-ccccccCCCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccCh-hHhhhhccccEEEc
Q 039821 245 LSLMQN-QIETLSEVPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPV-GMSELGSSLELLDI 322 (555)
Q Consensus 245 L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~~L~~L~l 322 (555)
++..++ .+..+|.+..+.+|+.|+|++++.+..+++..|..+++|++|+|++| . +..+|+ .+..+. +|++|+|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~---l~~~~~~~~~~l~-~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-G---LRFVAPDAFHFTP-RLSRLNL 87 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-C---CCEECTTGGGSCS-CCCEEEC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-c---cceeCHHHhcCCc-CCCEEeC
Confidence 455555 67777777788899999999645688888888999999999999999 5 666654 568887 9999999
Q ss_pred CCCCCcccchhhhCCCCCcEEccCCCc
Q 039821 323 SHTSIRELPEELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 323 ~~~~i~~lp~~i~~L~~L~~L~l~~~~ 349 (555)
++|.+..+|..+....+|+.|++.+|.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCC
Confidence 999999999865544459999999984
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=4.5e-07 Score=89.20 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=71.7
Q ss_pred EEEcccCcchhccchhHhccCCcccEEEecC-CCCCccccccC-hhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcE
Q 039821 266 TLFLDFNEDVEMIADGFFQFMPSLKVLKMSN-CGKSWSNFQLP-VGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKC 342 (555)
Q Consensus 266 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~lp-~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~ 342 (555)
.+++.+++.+..+|. +..+.+|++|+|++ | . +..+| ..++.+. +|++|+|++|.+..+|. .++.|++|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~---l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-H---LQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-S---CCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-C---CCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 456665435778887 88899999999996 7 6 77777 4577887 99999999999999976 6799999999
Q ss_pred EccCCCccccccchHHH
Q 039821 343 LNLRRTELLNKIPRQLI 359 (555)
Q Consensus 343 L~l~~~~~l~~lp~~~i 359 (555)
|+|++| .+..+|...+
T Consensus 85 L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 85 LNLSFN-ALESLSWKTV 100 (347)
T ss_dssp EECCSS-CCSCCCSTTT
T ss_pred EeCCCC-ccceeCHHHc
Confidence 999999 6888987633
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=2.4e-07 Score=91.76 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=17.8
Q ss_pred cccccEEEEeecCCCCcc------cccccCCCCceEEeecCC
Q 039821 412 FRSLHCVTIHICQKLKDT------TFLVFAPNLKSLSLFHCG 447 (555)
Q Consensus 412 ~~~L~~L~l~~~~~l~~~------~~l~~l~~L~~L~l~~~~ 447 (555)
.++|+.|++++| .++.. ..+...++|++|+|++|.
T Consensus 210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 345666666655 23221 122344666666666664
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.3e-07 Score=76.62 Aligned_cols=90 Identities=9% Similarity=0.059 Sum_probs=66.3
Q ss_pred ccccccEEEEeecCCCCc--ccccccCCCCceEEeecCCcchhhhccCcccccccccCCCCC----CcccceeecCcccc
Q 039821 411 VFRSLHCVTIHICQKLKD--TTFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISP----FENLRLLRLSHLPN 484 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~L~~L~l~~~~~ 484 (555)
.-.+|+.|++++|. +++ +..+..+++|++|+|++|..+++--- . .++. +++|++|+|++|++
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~----~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------E----RLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------H----HHHTCHHHHHHCCEEEEESCTT
T ss_pred CCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------H----HHHhcccccCCCCEEEcCCCCc
Confidence 34579999999996 554 45678899999999999987665310 0 2222 35899999999998
Q ss_pred cccccc-cccCCCCcceEEEcCCCCCCcc
Q 039821 485 LKSIYW-KPLPFTHLKEMVVRGCDQLEKL 512 (555)
Q Consensus 485 L~~l~~-~~~~~~~L~~L~l~~C~~L~~l 512 (555)
++.-.. ....+++|+.|++++|++++..
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 875322 2345899999999999998753
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=5.5e-07 Score=89.18 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=99.6
Q ss_pred cceeEeecccccccccc-----CC--CCCCcceEEEcccCcchhcc-chhHhccCCcccEEEecCCCCCccccc-cChhH
Q 039821 240 ENVRRLSLMQNQIETLS-----EV--PTCPHLLTLFLDFNEDVEMI-ADGFFQFMPSLKVLKMSNCGKSWSNFQ-LPVGM 310 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~-lp~~~ 310 (555)
.+++.|++.++.+.... .. ...++|++|++++|. +... .......+++|+.|++++| . +.. -...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~---l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-S---LGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-C---CCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-C---CCHHHHHHH
Confidence 36788888888765421 11 244799999999775 3322 2222344678999999999 4 322 12223
Q ss_pred hhh----hccccEEEcCCCCCcc-----cchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccc
Q 039821 311 SEL----GSSLELLDISHTSIRE-----LPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHL 381 (555)
Q Consensus 311 ~~l----~~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L 381 (555)
... .++|++|+|++|.+.. ++..+...++|++|++++|. +.......+.. .+...++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~------------~L~~~~~L 213 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAA------------QLDRNRQL 213 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHH------------HGGGCSCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHH------------HHhcCCCc
Confidence 221 1389999999998865 45566788999999999994 44432211111 24556788
Q ss_pred cccccccccccceeeecccccccccccccccccccEEEEeecC
Q 039821 382 NELWIDRAKELELLKIDYTEIVRKRREPFVFRSLHCVTIHICQ 424 (555)
Q Consensus 382 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 424 (555)
++|++++|. ++..... .+...+...++|++|++++|.
T Consensus 214 ~~L~Ls~N~-i~~~g~~-----~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 214 QELNVAYNG-AGDTAAL-----ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CEEECCSSC-CCHHHHH-----HHHHHHHHCSSCCEEECTTSS
T ss_pred CeEECCCCC-CCHHHHH-----HHHHHHHhCCCCCEEeccCCC
Confidence 999988873 2211110 011111246889999999984
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=2.4e-06 Score=83.98 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=33.5
Q ss_pred cCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccc-----ccccccCCCCcceEEEcCC
Q 039821 434 FAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKS-----IYWKPLPFTHLKEMVVRGC 506 (555)
Q Consensus 434 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~-----l~~~~~~~~~L~~L~l~~C 506 (555)
.+|+|++|.+.+|........ .+ .....+++|++|+|+.+ .+.. +.....++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~--------~l-a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVE--------MF-LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHH--------HH-HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHH--------HH-HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 466777777776654332211 00 01134677777777653 4443 2223235677777777766
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=5.2e-06 Score=81.54 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=31.5
Q ss_pred ccccccEEEEeecCCCCcc----cccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcc
Q 039821 411 VFRSLHCVTIHICQKLKDT----TFLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHL 482 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 482 (555)
.+++|+.|.+.+|...... .....+++|++|+|+.|..-+.... .+...+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--------~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--------LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--------HHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH--------HHHhhcccCCcceEEECCCC
Confidence 4666777777666322111 1112466777777766542221110 01112345667777777665
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2e-06 Score=74.22 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=22.9
Q ss_pred ccccEEEEeecCCCCc--ccccccCCCCceEEeecCCcchh
Q 039821 413 RSLHCVTIHICQKLKD--TTFLVFAPNLKSLSLFHCGAMEE 451 (555)
Q Consensus 413 ~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~ 451 (555)
++|++|+|++|..+++ +..+..+++|++|+|++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 3566666666655554 33455566666666666665543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.79 E-value=0.0003 Score=70.15 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=29.2
Q ss_pred CCCCCcccceeecCccccccccccc-ccCCCCcceEEEcCCCCCCccCCCC-Cccc-ccceEEec
Q 039821 467 HISPFENLRLLRLSHLPNLKSIYWK-PLPFTHLKEMVVRGCDQLEKLPLDS-NSAK-ERKFVIRG 528 (555)
Q Consensus 467 ~~~~~~~L~~L~l~~~~~L~~l~~~-~~~~~~L~~L~l~~C~~L~~lp~~~-~~~~-L~~l~i~~ 528 (555)
.+.++.+|+.++|.+ +++.+... ...+.+|+.+.+.. +++.++... .... |+.+.+..
T Consensus 315 aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 355666677776643 34544332 22345666666542 355554432 2222 66666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=0.00028 Score=65.54 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=53.2
Q ss_pred ccCCcccEEEecCCCCCccccccChhHhhhhccccEEEcCCCCCcccchhhhCCC--CCcEEccCCCccccccc
Q 039821 284 QFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSLELLDISHTSIRELPEELKKLV--NLKCLNLRRTELLNKIP 355 (555)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp 355 (555)
..+++|+.|+|++| .-..+..+|..+..++ +|++|+|++|.|..+. .+..+. +|++|++.+|+....+|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 56899999999999 5122234557777887 9999999999999884 355555 99999999997555555
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0031 Score=62.69 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=53.0
Q ss_pred cccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCccccccccc
Q 039821 412 FRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSIY 489 (555)
Q Consensus 412 ~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 489 (555)
+.+|+.+.+... +..+. .+.++++|+.+.+.. .+..+.. ..+.++.+|+.+.|.. +++.+.
T Consensus 264 c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 264 CAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE-----------SVFAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp CSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT-----------TTTTTCTTCCEEECCT--TCCEEC
T ss_pred cccccEEecccc--cceecCcccccccccccccCCC--cccccCc-----------eeecCCCCcCEEEeCC--cccEeh
Confidence 455666555332 22221 345677777777743 2333322 2456677777777753 455554
Q ss_pred cc-ccCCCCcceEEEcCCCCCCccCCCC-Cccc-ccceEEechhhhhh
Q 039821 490 WK-PLPFTHLKEMVVRGCDQLEKLPLDS-NSAK-ERKFVIRGEEDWWN 534 (555)
Q Consensus 490 ~~-~~~~~~L~~L~l~~C~~L~~lp~~~-~~~~-L~~l~i~~~~~~~~ 534 (555)
.. ...+.+|+.+.+.. +++.++... .... |+.+.+.+....+.
T Consensus 327 ~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~ 372 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWN 372 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHH
T ss_pred HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehh
Confidence 32 33456677776642 455554322 2222 66666665544443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.21 E-value=0.001 Score=66.29 Aligned_cols=77 Identities=19% Similarity=0.073 Sum_probs=42.2
Q ss_pred ccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc
Q 039821 411 VFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI 488 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l 488 (555)
.+.+|+.+.+.. .++.+. .+.++++|+.+.+... ++.+.. ..+.+|.+|+.+.+.. +++.+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCTTCCEECCCT--TCCEE
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCCCCCEEEECc--cccEe
Confidence 466777777654 344433 4556777887777532 333322 2456677777777753 35555
Q ss_pred ccc-ccCCCCcceEEEc
Q 039821 489 YWK-PLPFTHLKEMVVR 504 (555)
Q Consensus 489 ~~~-~~~~~~L~~L~l~ 504 (555)
... ...+++|+.+.+.
T Consensus 358 ~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTTBTTCTTCCEEEEE
T ss_pred hHHHhhCCCCCCEEEEC
Confidence 432 2234555555553
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.10 E-value=0.00043 Score=60.86 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=49.2
Q ss_pred CCCCcceEEEcccCcchhcc----chhHhccCCcccEEEecCCCCCc-cccccChhHhhhhccccEEEcCCCCCcc----
Q 039821 259 PTCPHLLTLFLDFNEDVEMI----ADGFFQFMPSLKVLKMSNCGKSW-SNFQLPVGMSELGSSLELLDISHTSIRE---- 329 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-~~~~lp~~~~~l~~~L~~L~l~~~~i~~---- 329 (555)
...+.|++|+++++..+... ....+...++|++|+|++|.... ....+...+.... +|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHH
Confidence 45666777777755123221 11224556777777777773210 0012333344444 77777777777654
Q ss_pred -cchhhhCCCCCcEEcc--CCC
Q 039821 330 -LPEELKKLVNLKCLNL--RRT 348 (555)
Q Consensus 330 -lp~~i~~L~~L~~L~l--~~~ 348 (555)
+...+...++|++|++ ++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC
Confidence 3445666677777777 556
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.017 Score=57.01 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=7.2
Q ss_pred CCCCcccceeecC
Q 039821 468 ISPFENLRLLRLS 480 (555)
Q Consensus 468 ~~~~~~L~~L~l~ 480 (555)
+..+.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~ 294 (379)
T 4h09_A 282 CSGCSNLTKVVMD 294 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred ccccccccccccc
Confidence 4455566666554
No 161
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.86 E-value=0.016 Score=56.36 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=96.7
Q ss_pred CCcEEEEEeCchhhhcc----------cC-C-cceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCc
Q 039821 11 TTSKVVFTTRFIDVCGS----------ME-S-HRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLP 78 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~----------~~-~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 78 (555)
++.++|+|+|....... .. . ...+++.+|+.+|+.+++...+...+.... . ..+|++.|+|.|
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~----~~~i~~~t~G~P 243 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D----YEVVYEKIGGIP 243 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C----HHHHHHHHCSCH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c----HHHHHHHhCCCH
Confidence 36789999997653211 11 1 257899999999999999876521111111 1 178999999999
Q ss_pred hHHHHHHHHHhcCCCHHHHHH-HHHHHhhhhhhccCCchhhhhhhh-hhc--cCCChhhHhHHHhHhcCCCCCcccchHH
Q 039821 79 LALITIGRAMAYRKKAEQWRR-AIEELRRSASEFAGLGKEVYPLLK-FSY--DSLQNDTIRSCFLYCCLYPEDYDILKWD 154 (555)
Q Consensus 79 Lai~~~~~~L~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cfl~~s~Fp~~~~i~~~~ 154 (555)
+++..++..+....+...|.. +.+.... .+...+. +.+ ..+++ ..+..+..+|. +. +...
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~ 307 (357)
T 2fna_A 244 GWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSD 307 (357)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHH
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHH
Confidence 999999987653333333322 1111100 1111111 111 14666 78888888887 22 3333
Q ss_pred HHHHHH-HhCCCCCCcccChHHhHHHHHHHHHHhccccccCCCeEEe-chhhHHH
Q 039821 155 LIDCWI-GEGFLGESDRFGAENQGYDILDTLVRACLLEEVEDDKVKM-HDVIRDM 207 (555)
Q Consensus 155 li~~w~-aeg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~~~~~~~m-hdl~~~~ 207 (555)
+..... ..|. .........+++.|.+.+++.... ..|++ |.++++.
T Consensus 308 l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 308 VKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred HHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 332110 1121 011234567799999999997654 45664 6677654
No 162
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.82 E-value=0.026 Score=54.74 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=96.6
Q ss_pred CCcEEEEEeCchhhhcc----------c-C-CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCc
Q 039821 11 TTSKVVFTTRFIDVCGS----------M-E-SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLP 78 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 78 (555)
++.++|+|++...+... . + ....+++.+|+.+|+.+++...+...+...+ .+...+|+..++|.|
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIP 239 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCH
Confidence 46789999987643211 1 1 1247899999999999999876532221222 235788999999999
Q ss_pred hHHHHHHHHHhcCCCHHHHH-HHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccchHHHHH
Q 039821 79 LALITIGRAMAYRKKAEQWR-RAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILKWDLID 157 (555)
Q Consensus 79 Lai~~~~~~L~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~~~li~ 157 (555)
+++..++..+....+...+. .+.+...... ...+. .+.+ . ++ ..+..+..+|. + ..+...+..
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGELE---ELRR-R-SP-RYVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHH---HHHH-H-CH-HHHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CCCHHHHHH
Confidence 99999987653212222221 1111111000 00111 1111 1 45 77888888887 2 134444443
Q ss_pred HHHHhCCCCCCcccChHHhHHHHHHHHHHhccccccCCCeEEe-chhhHHHH
Q 039821 158 CWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEVEDDKVKM-HDVIRDMA 208 (555)
Q Consensus 158 ~w~aeg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~~~~~~~m-hdl~~~~~ 208 (555)
..... .- + ........+++.|.+.+++... .+.+.+ |.+++++.
T Consensus 304 ~~~~~-~~----~-~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 304 YLAVK-GT----K-IPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHT-TC----C-CCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHHHH-hC----C-CCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 32221 10 1 1123456789999999999765 355665 55666543
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=0.00083 Score=58.99 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=75.8
Q ss_pred cceeEeecccc-cccc-----c-cCCCCCCcceEEEcccCcchhccc----hhHhccCCcccEEEecCCCCCc-cccccC
Q 039821 240 ENVRRLSLMQN-QIET-----L-SEVPTCPHLLTLFLDFNEDVEMIA----DGFFQFMPSLKVLKMSNCGKSW-SNFQLP 307 (555)
Q Consensus 240 ~~l~~L~l~~~-~~~~-----l-~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-~~~~lp 307 (555)
..++.|++.++ .+.. + ..+...++|++|++++|. +.+.. ...+...++|++|+|++|.... ....+.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 57899999988 6643 1 223667899999999775 33221 2235667899999999994310 011244
Q ss_pred hhHhhhhccccEEEc--CCCCCcc-----cchhhhCCCCCcEEccCCCc
Q 039821 308 VGMSELGSSLELLDI--SHTSIRE-----LPEELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 308 ~~~~~l~~~L~~L~l--~~~~i~~-----lp~~i~~L~~L~~L~l~~~~ 349 (555)
..+.... +|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 115 ~~L~~n~-~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNT-SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCS-SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCC-CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5555665 8999999 8898865 44566777999999999993
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.51 E-value=0.019 Score=56.99 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccccccEEEEeecCCCCccc--ccccCCCCceEEeecCCcchhhhccCcccccccccCCCCCCcccceeecCcccccccc
Q 039821 411 VFRSLHCVTIHICQKLKDTT--FLVFAPNLKSLSLFHCGAMEEIISVGKFAEVPEMMGHISPFENLRLLRLSHLPNLKSI 488 (555)
Q Consensus 411 ~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l 488 (555)
.+.+|+.+.+.. .++.++ .+.++.+|+.+.|... ++.+.. ..+.+|.+|+.+.|.. +++.+
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILD-----------DAFAGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEECT--TCCBC
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehH-----------hHhhCCCCCCEEEECc--ccCEE
Confidence 567788887753 455544 5667899999998643 333322 2577888999998853 46666
Q ss_pred ccc-ccCCCCcceEEEcC
Q 039821 489 YWK-PLPFTHLKEMVVRG 505 (555)
Q Consensus 489 ~~~-~~~~~~L~~L~l~~ 505 (555)
... ...+++|+.+.+.+
T Consensus 349 ~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CGGGGTTCTTCCEEEESS
T ss_pred hHhHhhCCCCCCEEEECC
Confidence 432 34567788887754
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.51 E-value=0.064 Score=52.70 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=40.9
Q ss_pred cceeEeeccccccccccC--CCCCCcceEEEcccCcchhccchhHhccCCcccEEEecCCCCCccccccChhHhhhhccc
Q 039821 240 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNEDVEMIADGFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGSSL 317 (555)
Q Consensus 240 ~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~~L 317 (555)
.+++.+.+.. .+..+.. ..+|.+|+.+.+.. .+..+...+|..+ +|..+.+..+ +..+........ +|
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~-----l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER-----VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT-----CCEECTTTTTTC-CC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce-----eeEeccceeccC-Cc
Confidence 4455555542 2333332 36677777777752 2566666667665 4555555433 444444444443 66
Q ss_pred cEEEcCC
Q 039821 318 ELLDISH 324 (555)
Q Consensus 318 ~~L~l~~ 324 (555)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6666654
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.50 E-value=0.0039 Score=57.87 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCCCcceEEEcccCcchhccch--hHhccCCcccEEEecCCCCCccccccChhHhhhhc-cccEEEcCCCCCcc-cc---
Q 039821 259 PTCPHLLTLFLDFNEDVEMIAD--GFFQFMPSLKVLKMSNCGKSWSNFQLPVGMSELGS-SLELLDISHTSIRE-LP--- 331 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~lp~~~~~l~~-~L~~L~l~~~~i~~-lp--- 331 (555)
..+++|++|++++|. +..++. ..+..+++|++|+|++| . +..+ ..+..+.. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~---i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-E---LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-C---CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-c---cCCc-hhhhhcccCCcceEEccCCcCccccCcch
Confidence 457889999999665 555432 34678999999999999 5 4444 33443321 89999999999864 44
Q ss_pred ----hhhhCCCCCcEEcc
Q 039821 332 ----EELKKLVNLKCLNL 345 (555)
Q Consensus 332 ----~~i~~L~~L~~L~l 345 (555)
..+..+++|+.||=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 23677899999884
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.93 E-value=0.1 Score=51.88 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=88.2
Q ss_pred cEEEEEeCchhhhcccC---------CcceEEcCCCCHHHHHHHHHHHh---CCCCcCCchhHHHHHHHHHHHhC-----
Q 039821 13 SKVVFTTRFIDVCGSME---------SHRKFEVACLSEEDAWELFREKV---GQETLESDHEIVELAQTVAKECG----- 75 (555)
Q Consensus 13 srIivTTR~~~v~~~~~---------~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~----- 75 (555)
-.||+|||...+...+. ....+.+++++.++++++|...+ +... ..+ .+....|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccC
Confidence 34788888655321111 12239999999999999997654 3322 122 245778889999
Q ss_pred -CCchHHHHHHHHHh------cC--CCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCC-
Q 039821 76 -GLPLALITIGRAMA------YR--KKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYP- 145 (555)
Q Consensus 76 -glPLai~~~~~~L~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp- 145 (555)
|.|..+..+..... .. -+.+.+..++.... . ...+.-.+..|+. +.+.++..++.+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~ 322 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEATL 322 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHh
Confidence 99976655543221 11 12223332221100 0 2234456778888 7888888777653
Q ss_pred -CCcccchHHHHHHHH--H-hCCCCCCcccChHHhHHHHHHHHHHhcccccc
Q 039821 146 -EDYDILKWDLIDCWI--G-EGFLGESDRFGAENQGYDILDTLVRACLLEEV 193 (555)
Q Consensus 146 -~~~~i~~~~li~~w~--a-eg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~ 193 (555)
.+..+...++...+. + +- .... .........+++.|...+++...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 323 GGMEWINAGLLRQRYEDASLTM-YNVK--PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp TTCSSBCHHHHHHHHHHHHHHH-SCCC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCccHHHHHHHHHHHHHhh-cCCC--CCCHHHHHHHHHHHHhCCCEEee
Confidence 233455555544442 2 11 1100 01123455779999999999654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.77 E-value=0.032 Score=45.45 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=39.5
Q ss_pred EEEecCCCCCcccc--ccChhHhhhhccccEEEcCCCCCcccch-hhhCCCCCcEEccCCCc
Q 039821 291 VLKMSNCGKSWSNF--QLPVGMSELGSSLELLDISHTSIRELPE-ELKKLVNLKCLNLRRTE 349 (555)
Q Consensus 291 ~L~l~~~~~~~~~~--~lp~~~~~l~~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 349 (555)
.++.++. . +. .+|..+ +.+|++|+|++|.|+.+|. .+..+++|++|+|.+|+
T Consensus 12 ~v~Cs~~-~---L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-G---LTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-C---CCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-C---CccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5555555 3 55 677553 3489999999999999987 46778999999999884
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.35 E-value=0.11 Score=42.26 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=40.4
Q ss_pred cEEEcCCCCCc--ccchhhhCCCCCcEEccCCCccccccchHHHhccccccccccCccccCCCccccccccccc
Q 039821 318 ELLDISHTSIR--ELPEELKKLVNLKCLNLRRTELLNKIPRQLISNSSRDTTSVIDATAFADLNHLNELWIDRA 389 (555)
Q Consensus 318 ~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~L~~~~~~~l~~l~~L~~L~l~~~ 389 (555)
..++.++.+++ .+|..+ ..+|++|+|++| .+..+|.+ .|..+++|+.|.|.++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~----------------~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPG----------------LLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTT----------------TGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChh----------------hhhhccccCEEEecCC
Confidence 47888888998 999754 368999999999 78999986 3455666666666654
No 170
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.35 E-value=0.51 Score=42.40 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCcEEEEEeCchhhhcc--cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVCGS--MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
.+.++|+||+....... ......+++++++.+|..+++...+.......++ +....|++.|+|.|..+..+....
T Consensus 155 ~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 155 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56788999876542211 1123578999999999999999887543322222 346789999999999888776544
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.86 E-value=0.46 Score=45.22 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=49.8
Q ss_pred CcEEEEEeCchhhh-cccC--CcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 12 TSKVVFTTRFIDVC-GSME--SHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 12 gsrIivTTR~~~v~-~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
+.++|.||...... ..+. ....+.+.+++.+|..+++.+.+...+...++ +....++++++|.|-.+..+....
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITE---EAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHccCCHHHHHHHHHHH
Confidence 45677777643321 1111 23578999999999999998887544323333 356788999999998887766554
No 172
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=85.93 E-value=0.58 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCcEEEEEeCch
Q 039821 2 GIPLPSPQNTTSKVVFTTRFI 22 (555)
Q Consensus 2 ~~p~~~~~~~gsrIivTTR~~ 22 (555)
+.||| ....|+-|+|||...
T Consensus 1 sfPlP-a~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 1 SVPVP-ATELGSTELVTTKTA 20 (26)
T ss_pred CCccc-ccccCceEEEEeccC
Confidence 47999 888999999999853
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.48 E-value=2.6 Score=36.66 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=51.9
Q ss_pred CCCCcceEEEcccCcchhcc----chhHhccCCcccEEEecCCCCC-ccccccChhHhhhhccccEEEcCCCCCcc----
Q 039821 259 PTCPHLLTLFLDFNEDVEMI----ADGFFQFMPSLKVLKMSNCGKS-WSNFQLPVGMSELGSSLELLDISHTSIRE---- 329 (555)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-~~~~~lp~~~~~l~~~L~~L~l~~~~i~~---- 329 (555)
..-+.|+.|+++++..+.+- ...++..-..|+.|+|++|... .....+-+.+..-. .|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHH
Confidence 34566777777754223221 1223556678888888888331 00112333344444 78888888887764
Q ss_pred -cchhhhCCCCCcEEccCCC
Q 039821 330 -LPEELKKLVNLKCLNLRRT 348 (555)
Q Consensus 330 -lp~~i~~L~~L~~L~l~~~ 348 (555)
+-..+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 3334555567888888765
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.28 E-value=17 Score=34.87 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=85.8
Q ss_pred CCcEEEEEeCchhhhcccC------Cc-ceEEcCCCCHHHHHHHHHHHhC---CCCcCCchhHHHHHHHHHHHhC---CC
Q 039821 11 TTSKVVFTTRFIDVCGSME------SH-RKFEVACLSEEDAWELFREKVG---QETLESDHEIVELAQTVAKECG---GL 77 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~------~~-~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---gl 77 (555)
.+..+|+||+.......+. .. ..+.+++++.++..+++...+. ... ..+++ ....++++++ |.
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDPD---VVPLCAALAAREHGD 241 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCSS---HHHHHHHHHHSSSCC
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCHH---HHHHHHHHHHHhccC
Confidence 4567888887653222111 11 4788999999999999988752 222 22222 3566777777 99
Q ss_pred ch-HHHHHHHHHh-----c--CCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhc-CCCCCc
Q 039821 78 PL-ALITIGRAMA-----Y--RKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCC-LYPEDY 148 (555)
Q Consensus 78 PL-ai~~~~~~L~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~Fp~~~ 148 (555)
|- |+..+..... + .-+.+.+..++..... ..+.-++..++. +.+..+...+ .+-...
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~ 307 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGR 307 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCC
Confidence 93 3333332221 1 1244555555544322 123445677877 5555554444 332222
Q ss_pred ccchHHHHHHHH----HhCCCCCCcccChHHhHHHHHHHHHHhcccccc
Q 039821 149 DILKWDLIDCWI----GEGFLGESDRFGAENQGYDILDTLVRACLLEEV 193 (555)
Q Consensus 149 ~i~~~~li~~w~----aeg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~ 193 (555)
.+...++.+... ..| ... ........+++.|...+++...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 308 PASTGEIYERYKELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CEEHHHHHHHHHHHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcHHHHHHHHHHHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEE
Confidence 344443333321 123 111 2235566788999999998763
No 175
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=78.21 E-value=5.7 Score=34.65 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=47.9
Q ss_pred CCcEEEEEeCchhhhc-c-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVCG-S-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGR 86 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 86 (555)
.+.++|+||+...... . ......+.+.+++.++..+++.+.+...+...++ +....+++.++|.|..+..+..
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899988654211 1 1112378999999999999998877432212222 3467788999999986554433
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.53 E-value=2.5 Score=36.77 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=46.0
Q ss_pred hHhccCCcccEEEecCC-CCC-ccccccChhHhhhhccccEEEcCCCCCcc-----cchhhhCCCCCcEEccCCCcccc
Q 039821 281 GFFQFMPSLKVLKMSNC-GKS-WSNFQLPVGMSELGSSLELLDISHTSIRE-----LPEELKKLVNLKCLNLRRTELLN 352 (555)
Q Consensus 281 ~~~~~l~~L~~L~l~~~-~~~-~~~~~lp~~~~~l~~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~ 352 (555)
..+..-+.|+.|+|+++ ... .....+-+.+..-. .|+.|+|++|.|.. +-..+..=+.|++|+|++| .+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 34556688999999875 220 00112334444444 89999999998864 3344555678999999999 444
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.76 E-value=53 Score=31.33 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=86.4
Q ss_pred CCcEEEEEeCchhhhccc------CCcceEEcCCCCHHHHHHHHHHHhC---CCCcCCchhHHHHHHHHHHHhC---CCc
Q 039821 11 TTSKVVFTTRFIDVCGSM------ESHRKFEVACLSEEDAWELFREKVG---QETLESDHEIVELAQTVAKECG---GLP 78 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---glP 78 (555)
.+.+||+||+.......+ .....+.+++++.++..++|...+. ... ..+++ ....+++.++ |.|
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~~---~~~~i~~~~~~~~G~~ 238 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG-TYDDE---ILSYIAAISAKEHGDA 238 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-SCCSH---HHHHHHHHHHTTCCCH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC-CcCHH---HHHHHHHHHHhccCCH
Confidence 467899999875321111 1123899999999999999998752 222 22332 3566777777 887
Q ss_pred h-HHHHHHHHH--h---cCCCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcCCCCCcccch
Q 039821 79 L-ALITIGRAM--A---YRKKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYDILK 152 (555)
Q Consensus 79 L-ai~~~~~~L--~---~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~Fp~~~~i~~ 152 (555)
. |+..+.... . ..-+.+.+..+++.... ..+.-++..|+. +.+..+..++....+..+.
T Consensus 239 r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~- 303 (384)
T 2qby_B 239 RKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH- 303 (384)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-
Confidence 6 444443332 1 12345666665554322 234455677776 5565555555411101111
Q ss_pred HHHHHHHHHhCC-CCCCcccChHHhHHHHHHHHHHhcccccc
Q 039821 153 WDLIDCWIGEGF-LGESDRFGAENQGYDILDTLVRACLLEEV 193 (555)
Q Consensus 153 ~~li~~w~aeg~-~~~~~~~~~~~~~~~~l~~Lv~~sli~~~ 193 (555)
+.. .-+++.+ ... ........+++.|...+++...
T Consensus 304 ~~~--~~~~~~~g~~~----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 304 KMY--TDLCNKFKQKP----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHH--HHHHHHTTCCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHH--HHHHHHcCCCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 111 1222211 111 1234566778999999998753
No 178
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.93 E-value=26 Score=33.48 Aligned_cols=67 Identities=6% Similarity=0.057 Sum_probs=42.4
Q ss_pred CcEEEEEeCchhhhcccCC-------cceEEcCCCCHHHHHHHHHHHhC---CCCcCCchhHHHHHHHHHHHhC---CCc
Q 039821 12 TSKVVFTTRFIDVCGSMES-------HRKFEVACLSEEDAWELFREKVG---QETLESDHEIVELAQTVAKECG---GLP 78 (555)
Q Consensus 12 gsrIivTTR~~~v~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---glP 78 (555)
+..+|+||+.......+.. ...+.+++++.++..+++...+. ... ..++ +....+++.++ |.|
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPG-VLPD---NVIKLCAALAAREHGDA 238 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS-CSCH---HHHHHHHHHHHHTTCCH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhcCCH
Confidence 4567888887654332221 24799999999999999988652 212 2223 34556666776 998
Q ss_pred hHHH
Q 039821 79 LALI 82 (555)
Q Consensus 79 Lai~ 82 (555)
..+.
T Consensus 239 r~~~ 242 (386)
T 2qby_A 239 RRAL 242 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7443
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=66.13 E-value=45 Score=31.88 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=86.1
Q ss_pred CCcEEEEEeCchhhhcccC-------CcceEEcCCCCHHHHHHHHHHHhCC---CCcCCchhHHHHHHHHHHHh------
Q 039821 11 TTSKVVFTTRFIDVCGSME-------SHRKFEVACLSEEDAWELFREKVGQ---ETLESDHEIVELAQTVAKEC------ 74 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c------ 74 (555)
.+..||+||++......+. ....+.+++++.++..+++...+.. .. ..+ .+....+++.+
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYS---EDILQMIADITGAQTPL 233 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSC---HHHHHHHHHHHSBSSTT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCC---HHHHHHHHHHHhhcccC
Confidence 3567888888765433322 1236999999999999999887632 22 222 24567788888
Q ss_pred ---CCCchHHHHHHHH-Hh-----cC--CCHHHHHHHHHHHhhhhhhccCCchhhhhhhhhhccCCChhhHhHHHhHhcC
Q 039821 75 ---GGLPLALITIGRA-MA-----YR--KKAEQWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCL 143 (555)
Q Consensus 75 ---~glPLai~~~~~~-L~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~ 143 (555)
+|.|-.+..+... .. +. -+.+....+..... ...+.-.+..|+. +.+..+..++.
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~ 299 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVR 299 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHH
Confidence 7887544433322 21 11 12222222222111 1122233455666 66666665554
Q ss_pred CC---CCcccchHHHHHHHHH----hCCCCCCcccChHHhHHHHHHHHHHhcccccc
Q 039821 144 YP---EDYDILKWDLIDCWIG----EGFLGESDRFGAENQGYDILDTLVRACLLEEV 193 (555)
Q Consensus 144 Fp---~~~~i~~~~li~~w~a----eg~~~~~~~~~~~~~~~~~l~~Lv~~sli~~~ 193 (555)
+. .+..+....+...+.. .|... -.......+++.|...+++...
T Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 300 SLKISHTPYITFGDAEESYKIVCEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHhhccCCCccHHHHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 43 2224455555444432 22111 1124566789999999999764
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.33 E-value=20 Score=33.36 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=47.3
Q ss_pred CCcEEEEEeCchhhh-cc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchH-HHHHHH
Q 039821 11 TTSKVVFTTRFIDVC-GS-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLA-LITIGR 86 (555)
Q Consensus 11 ~gsrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~ 86 (555)
.+.++|+||+...-. .. ......+++.+++.++..+++...+...+...++ +....+++.++|.|.. +..+..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTN---DGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHH
Confidence 467888888764321 11 1123489999999999999998876432212222 3467899999999954 444443
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=49.85 E-value=27 Score=30.60 Aligned_cols=50 Identities=4% Similarity=0.163 Sum_probs=35.5
Q ss_pred ceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHH
Q 039821 32 RKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITI 84 (555)
Q Consensus 32 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 84 (555)
..+.+++++.++..+++...+...+...++ +....+++.++|.+-.+..+
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQLPE---DVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCCCCH---HHHHHHHHHTTTCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHccCCHHHHHHH
Confidence 688999999999999998877433322332 34567888888887655543
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=46.82 E-value=51 Score=30.55 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCcEEEEEeCchhhh-ccc-CCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHHHH
Q 039821 11 TTSKVVFTTRFIDVC-GSM-ESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGRAM 88 (555)
Q Consensus 11 ~gsrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 88 (555)
.+.++|+||+...-. ..+ .....+.+.+++.++..+++...+...+...++ +....+++.++|.|..+..+....
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTE---EGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888764321 110 112378999999999999998887544322222 346778889999998665544443
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=40.73 E-value=36 Score=33.67 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=45.6
Q ss_pred CCcEEEEEeCch---------hhhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHH
Q 039821 11 TTSKVVFTTRFI---------DVCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLAL 81 (555)
Q Consensus 11 ~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 81 (555)
.|..||+||... .+.+.+.....+.+++++.++-.+++.+.+...+...+++ ....|++.++|.+-.+
T Consensus 226 ~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 226 SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRL 302 (440)
T ss_dssp TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHH
Confidence 467899998852 2223333346789999999999999988874322223332 3566778888877544
Q ss_pred HH
Q 039821 82 IT 83 (555)
Q Consensus 82 ~~ 83 (555)
..
T Consensus 303 ~~ 304 (440)
T 2z4s_A 303 RG 304 (440)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.71 E-value=1e+02 Score=29.06 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=46.6
Q ss_pred CCcEEEEEeCchh-hhcc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHHH
Q 039821 11 TTSKVVFTTRFID-VCGS-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIGR 86 (555)
Q Consensus 11 ~gsrIivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 86 (555)
.+..+|+||.... +... ......+++.+++.++..+++.+.+...+...++ +....+++.++|.|..+..+..
T Consensus 148 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~---~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH---HHHHHHHHHSSSCHHHHHHHHH
T ss_pred CceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHCCCCHHHHHHHHH
Confidence 3566777776433 1111 1123578999999999999998776332212222 3467789999999987766543
No 185
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=26.12 E-value=1.6e+02 Score=26.76 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=46.4
Q ss_pred CCcEEEEEeCchhh-hcc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 039821 11 TTSKVVFTTRFIDV-CGS-MESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGGLPLALITIG 85 (555)
Q Consensus 11 ~gsrIivTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 85 (555)
.+.++|+||....- ... ......+++.+++.++..+++...+...+...++ +....+++.++|.+..+..+.
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCH---HHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 46778888875441 111 1122478999999999999998887544322222 345678888899887554433
No 186
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=23.76 E-value=2.7e+02 Score=24.87 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=43.1
Q ss_pred CCcEEEEEeCchhhhc-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCC-CchHHHH
Q 039821 11 TTSKVVFTTRFIDVCG-----SMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGG-LPLALIT 83 (555)
Q Consensus 11 ~gsrIivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~ 83 (555)
.+..||.||....... .......+.++..+.++-.+++...+.........+ ...++....| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567888888554322 112345789999999999999998875544233333 3456666666 3434443
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.09 E-value=1.4e+02 Score=28.03 Aligned_cols=72 Identities=7% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCcEEEEEeCchh-hhccc-CCcceEEcCCCCHHHHHHHHHHHhCCCCcCCc-hhHHHHHHHHHHHhCCCchHHHHHH
Q 039821 11 TTSKVVFTTRFID-VCGSM-ESHRKFEVACLSEEDAWELFREKVGQETLESD-HEIVELAQTVAKECGGLPLALITIG 85 (555)
Q Consensus 11 ~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~~ 85 (555)
++.+||+||.+.. +...+ .....+++++++.++..+.+.+.+...+...+ + +....|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHHH
Confidence 3567887776532 21111 12257899999999999999887743322222 2 245778888999886554433
No 188
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=21.90 E-value=46 Score=17.46 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.1
Q ss_pred CCCchHHHHHHHHHhc
Q 039821 75 GGLPLALITIGRAMAY 90 (555)
Q Consensus 75 ~glPLai~~~~~~L~~ 90 (555)
..+|||+.++|+.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4689999999987753
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.19 E-value=2.9e+02 Score=27.63 Aligned_cols=72 Identities=4% Similarity=0.001 Sum_probs=44.0
Q ss_pred cEEEEEeCchh---hhcccCCcceEEcCCCCHHHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCC-CchHHHHHHHH
Q 039821 13 SKVVFTTRFID---VCGSMESHRKFEVACLSEEDAWELFREKVGQETLESDHEIVELAQTVAKECGG-LPLALITIGRA 87 (555)
Q Consensus 13 srIivTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 87 (555)
..||++|.+.. +.........+.+++++.++..+.+...+...+...+++ ....|++.++| ++-|+..+...
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN---VIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHHHH
Confidence 34666665432 211112235789999999999999988764433223332 35678888999 55566655433
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=20.43 E-value=4.4e+02 Score=23.24 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=46.7
Q ss_pred CcEEEEEeCchhhhcc--c--CCcceEEcCCCCH-HHHHHHHHHHhCCCCcCCchhHHHHHHHHHHHhCC------CchH
Q 039821 12 TSKVVFTTRFIDVCGS--M--ESHRKFEVACLSE-EDAWELFREKVGQETLESDHEIVELAQTVAKECGG------LPLA 80 (555)
Q Consensus 12 gsrIivTTR~~~v~~~--~--~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLa 80 (555)
...||.||........ . .....+.++++++ ++-.+++.... . .+ .+....+++.+.| ++-+
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~----~~---~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N----FK---DKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C----SC---HHHHHHHHHHHTTSEEEECHHHH
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C----CC---HHHHHHHHHHhcCCCccccHHHH
Confidence 3457778887654332 1 1245788999998 66666665432 1 11 2235677888877 3444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhh
Q 039821 81 LITIGRAMAYRKKAEQWRRAIEELRR 106 (555)
Q Consensus 81 i~~~~~~L~~~~~~~~w~~~l~~l~~ 106 (555)
+..+-..-. ......+..++..+..
T Consensus 239 ~~~l~~a~~-~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 239 LMLIEMSLQ-MDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHTT-SCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhh-hchHHHHHHHHHHHHH
Confidence 444433322 2334556665555443
Done!