Query 039822
Match_columns 711
No_of_seqs 255 out of 3463
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-70 3E-75 613.3 29.3 635 1-684 189-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-56 4.2E-61 528.4 43.1 619 1-690 217-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.8E-38 1.9E-42 317.8 10.1 251 1-254 29-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 9.9E-22 2.2E-26 233.8 15.5 237 327-595 119-367 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.2E-21 9E-26 228.5 16.7 331 326-686 69-416 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.1E-23 2.5E-28 213.8 -8.1 311 326-688 55-376 (1255)
7 PLN03210 Resistant to P. syrin 99.8 9.2E-20 2E-24 216.9 16.0 303 326-688 589-944 (1153)
8 KOG4194 Membrane glycoprotein 99.8 3.1E-20 6.8E-25 187.8 2.9 329 326-686 78-428 (873)
9 KOG4194 Membrane glycoprotein 99.7 2.1E-19 4.5E-24 182.0 1.1 307 326-682 125-447 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 7.1E-20 1.5E-24 177.4 -5.8 211 327-570 69-306 (565)
11 KOG0444 Cytoskeletal regulator 99.7 7.7E-20 1.7E-24 186.2 -6.1 309 326-688 32-353 (1255)
12 KOG0618 Serine/threonine phosp 99.6 2.2E-17 4.7E-22 176.5 -5.4 115 327-447 22-145 (1081)
13 KOG0618 Serine/threonine phosp 99.6 9.9E-17 2.1E-21 171.5 -5.2 237 415-686 241-488 (1081)
14 KOG0472 Leucine-rich repeat pr 99.5 8.3E-17 1.8E-21 156.3 -9.5 265 326-686 45-309 (565)
15 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.6E-17 143.9 12.3 115 535-685 342-456 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.4 1.1E-12 2.4E-17 148.6 8.1 308 327-669 546-866 (889)
17 KOG0617 Ras suppressor protein 99.3 1.3E-13 2.8E-18 118.7 -4.1 160 348-579 31-190 (264)
18 PRK15387 E3 ubiquitin-protein 99.3 4.2E-11 9.2E-16 132.9 13.9 92 326-433 222-319 (788)
19 PRK15370 E3 ubiquitin-protein 99.2 1.6E-11 3.4E-16 137.1 7.6 81 328-435 180-260 (754)
20 KOG0617 Ras suppressor protein 99.2 8.5E-13 1.8E-17 113.7 -4.7 140 326-475 33-182 (264)
21 KOG4237 Extracellular matrix p 99.1 2.9E-11 6.3E-16 118.1 4.3 233 326-569 67-354 (498)
22 PRK04841 transcriptional regul 99.1 6.1E-09 1.3E-13 123.9 23.0 264 1-303 42-332 (903)
23 PRK15370 E3 ubiquitin-protein 99.1 3.7E-10 8.1E-15 126.3 10.5 92 326-446 199-290 (754)
24 KOG4341 F-box protein containi 99.0 1.5E-11 3.2E-16 121.2 -2.0 263 389-710 188-456 (483)
25 cd00116 LRR_RI Leucine-rich re 99.0 3E-11 6.5E-16 125.0 -1.0 37 388-425 20-61 (319)
26 KOG4237 Extracellular matrix p 99.0 2.2E-11 4.7E-16 119.0 -3.5 140 337-504 57-198 (498)
27 cd00116 LRR_RI Leucine-rich re 99.0 7.8E-11 1.7E-15 122.0 -1.0 270 395-690 2-294 (319)
28 KOG4341 F-box protein containi 98.8 2.2E-10 4.8E-15 113.1 -4.1 195 464-691 214-418 (483)
29 TIGR03015 pepcterm_ATPase puta 98.7 3.2E-07 7E-12 92.2 16.8 172 1-177 53-242 (269)
30 PRK00411 cdc6 cell division co 98.7 6.8E-06 1.5E-10 87.6 24.5 277 1-293 65-375 (394)
31 COG2909 MalT ATP-dependent tra 98.6 1.7E-06 3.8E-11 94.0 19.4 269 1-305 47-340 (894)
32 PF05729 NACHT: NACHT domain 98.6 4.3E-07 9.3E-12 83.8 11.6 135 1-140 10-163 (166)
33 KOG3207 Beta-tubulin folding c 98.5 5.2E-08 1.1E-12 97.2 1.6 236 389-686 119-366 (505)
34 PF14580 LRR_9: Leucine-rich r 98.4 8.6E-08 1.9E-12 87.2 2.5 136 531-689 15-155 (175)
35 KOG2120 SCF ubiquitin ligase, 98.4 1.3E-08 2.7E-13 96.3 -3.7 184 392-631 186-374 (419)
36 KOG0532 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 103.0 -3.7 166 327-510 76-250 (722)
37 TIGR02928 orc1/cdc6 family rep 98.3 0.00022 4.8E-09 75.1 26.0 263 1-279 50-351 (365)
38 PF14580 LRR_9: Leucine-rich r 98.3 2.1E-07 4.6E-12 84.7 2.0 107 559-688 17-127 (175)
39 COG3903 Predicted ATPase [Gene 98.3 2.8E-06 6E-11 85.4 8.1 281 1-303 24-314 (414)
40 KOG1909 Ran GTPase-activating 98.2 4.3E-07 9.2E-12 88.3 2.0 41 385-425 86-130 (382)
41 PRK06893 DNA replication initi 98.2 1E-05 2.3E-10 78.4 11.8 144 1-175 49-205 (229)
42 KOG1259 Nischarin, modulator o 98.2 2.5E-07 5.4E-12 87.7 0.0 132 494-668 284-416 (490)
43 KOG2120 SCF ubiquitin ligase, 98.2 7.4E-08 1.6E-12 91.2 -3.5 93 460-572 204-297 (419)
44 KOG1259 Nischarin, modulator o 98.2 3.1E-07 6.8E-12 87.0 -0.7 230 348-631 180-410 (490)
45 PF01637 Arch_ATPase: Archaeal 98.1 8.2E-06 1.8E-10 80.0 8.1 167 1-172 30-233 (234)
46 PRK00080 ruvB Holliday junctio 98.1 4.2E-05 9.1E-10 78.9 12.8 240 1-277 61-309 (328)
47 TIGR00635 ruvB Holliday juncti 98.1 4.5E-05 9.8E-10 78.1 12.7 239 1-277 40-288 (305)
48 PF13401 AAA_22: AAA domain; P 98.0 5.6E-06 1.2E-10 72.9 5.0 105 1-109 14-125 (131)
49 KOG3207 Beta-tubulin folding c 98.0 6.4E-07 1.4E-11 89.6 -1.2 204 326-549 121-340 (505)
50 PF13173 AAA_14: AAA domain 98.0 2.1E-05 4.7E-10 68.6 7.8 110 1-132 12-127 (128)
51 KOG0532 Leucine-rich repeat (L 98.0 4.7E-07 1E-11 93.4 -3.2 204 330-571 54-270 (722)
52 KOG1909 Ran GTPase-activating 98.0 7E-07 1.5E-11 86.9 -2.3 149 490-660 153-308 (382)
53 TIGR03420 DnaA_homol_Hda DnaA 98.0 6.4E-05 1.4E-09 73.2 11.4 145 1-176 48-204 (226)
54 COG4886 Leucine-rich repeat (L 97.9 4.9E-06 1.1E-10 88.7 3.2 94 348-447 114-217 (394)
55 COG4886 Leucine-rich repeat (L 97.9 5.9E-06 1.3E-10 88.1 3.5 62 530-595 227-288 (394)
56 PRK15386 type III secretion pr 97.8 6.5E-05 1.4E-09 77.1 9.1 142 526-684 43-187 (426)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 53.8 2.9 40 391-432 1-40 (44)
58 PF13855 LRR_8: Leucine rich r 97.7 2.7E-05 5.8E-10 57.8 3.3 56 536-594 2-59 (61)
59 PF13855 LRR_8: Leucine rich r 97.7 3.5E-05 7.6E-10 57.2 3.9 59 620-685 1-60 (61)
60 PRK15386 type III secretion pr 97.7 5.9E-05 1.3E-09 77.4 6.1 100 559-687 50-169 (426)
61 TIGR00678 holB DNA polymerase 97.7 0.00084 1.8E-08 63.1 13.0 90 69-168 95-186 (188)
62 PTZ00112 origin recognition co 97.6 0.0042 9E-08 69.2 19.1 176 1-177 791-986 (1164)
63 COG2256 MGS1 ATPase related to 97.6 0.0011 2.5E-08 66.6 12.8 140 1-167 58-206 (436)
64 PRK13342 recombination factor 97.5 0.0017 3.8E-08 69.1 14.6 103 68-174 90-197 (413)
65 cd01128 rho_factor Transcripti 97.5 0.00017 3.7E-09 70.2 6.2 78 1-79 26-112 (249)
66 PRK05564 DNA polymerase III su 97.5 0.0011 2.4E-08 67.9 12.4 148 1-173 36-190 (313)
67 PRK14961 DNA polymerase III su 97.5 0.0021 4.4E-08 67.2 14.4 97 69-169 118-216 (363)
68 KOG1947 Leucine rich repeat pr 97.5 1.9E-05 4.1E-10 86.9 -1.0 43 648-690 399-443 (482)
69 PRK08727 hypothetical protein; 97.5 0.0013 2.7E-08 64.1 11.8 139 1-170 51-201 (233)
70 KOG3665 ZYG-1-like serine/thre 97.4 4.1E-05 8.8E-10 85.5 1.0 82 390-476 147-230 (699)
71 PRK14949 DNA polymerase III su 97.4 0.0014 3.1E-08 73.6 12.6 100 68-171 117-218 (944)
72 PLN03150 hypothetical protein; 97.4 0.00013 2.8E-09 81.8 4.5 83 352-437 420-512 (623)
73 PRK14963 DNA polymerase III su 97.4 0.0026 5.6E-08 68.8 14.0 98 69-170 115-214 (504)
74 PRK06645 DNA polymerase III su 97.4 0.0024 5.2E-08 68.8 13.6 97 68-168 126-224 (507)
75 PRK09087 hypothetical protein; 97.4 0.0023 4.9E-08 61.8 12.2 95 73-173 90-195 (226)
76 COG1474 CDC6 Cdc6-related prot 97.4 0.02 4.2E-07 59.4 19.7 171 1-173 52-238 (366)
77 PRK07003 DNA polymerase III su 97.4 0.0024 5.2E-08 70.5 13.4 103 69-175 118-223 (830)
78 PRK14960 DNA polymerase III su 97.3 0.0025 5.3E-08 69.5 12.9 97 69-169 117-215 (702)
79 PRK08084 DNA replication initi 97.3 0.0036 7.9E-08 61.0 12.8 142 1-173 55-209 (235)
80 PRK12323 DNA polymerase III su 97.3 0.002 4.2E-08 70.1 11.6 104 68-175 122-228 (700)
81 PRK08903 DnaA regulatory inact 97.3 0.0024 5.2E-08 62.1 11.3 142 1-177 52-203 (227)
82 PRK12402 replication factor C 97.3 0.0034 7.4E-08 65.3 13.2 100 69-172 124-225 (337)
83 PRK09376 rho transcription ter 97.3 0.00048 1E-08 70.1 6.3 78 1-79 179-265 (416)
84 PRK05642 DNA replication initi 97.3 0.0037 7.9E-08 60.9 12.3 144 1-175 55-210 (234)
85 PLN03150 hypothetical protein; 97.2 0.00037 8.1E-09 78.2 5.9 102 327-432 419-532 (623)
86 PRK14957 DNA polymerase III su 97.2 0.0037 8E-08 67.8 13.1 104 68-175 117-223 (546)
87 cd00009 AAA The AAA+ (ATPases 97.2 0.0011 2.4E-08 59.4 7.5 97 1-111 29-131 (151)
88 PRK07940 DNA polymerase III su 97.2 0.0046 9.9E-08 64.7 12.9 95 69-172 116-212 (394)
89 PRK14087 dnaA chromosomal repl 97.2 0.0045 9.8E-08 66.3 13.0 159 1-177 151-323 (450)
90 PRK14964 DNA polymerase III su 97.1 0.0063 1.4E-07 65.1 13.4 96 69-168 115-212 (491)
91 COG3899 Predicted ATPase [Gene 97.1 0.008 1.7E-07 69.6 14.7 216 68-302 152-385 (849)
92 PRK07994 DNA polymerase III su 97.1 0.0049 1.1E-07 68.0 12.4 99 68-170 117-217 (647)
93 KOG1947 Leucine rich repeat pr 97.1 7.3E-05 1.6E-09 82.2 -2.0 36 390-425 187-224 (482)
94 TIGR02397 dnaX_nterm DNA polym 97.0 0.015 3.3E-07 60.9 14.9 102 69-174 116-219 (355)
95 PRK08691 DNA polymerase III su 97.0 0.0063 1.4E-07 67.1 11.8 101 69-173 118-221 (709)
96 PRK07471 DNA polymerase III su 97.0 0.001 2.2E-08 69.0 5.5 98 69-174 140-239 (365)
97 PRK14951 DNA polymerase III su 97.0 0.0093 2E-07 65.8 13.2 98 69-170 123-222 (618)
98 PRK14962 DNA polymerase III su 97.0 0.011 2.3E-07 63.6 13.2 105 69-177 116-223 (472)
99 PRK05707 DNA polymerase III su 97.0 0.012 2.6E-07 60.1 13.0 97 69-173 105-203 (328)
100 COG0593 DnaA ATPase involved i 97.0 0.0048 1E-07 63.8 10.0 154 1-173 123-290 (408)
101 PRK04195 replication factor C 96.9 0.071 1.5E-06 58.2 19.8 151 1-177 49-206 (482)
102 PLN03025 replication factor C 96.9 0.0074 1.6E-07 62.0 11.5 96 69-168 98-195 (319)
103 PRK14958 DNA polymerase III su 96.9 0.0084 1.8E-07 65.1 12.3 97 69-169 118-216 (509)
104 PRK14955 DNA polymerase III su 96.9 0.0068 1.5E-07 64.1 11.3 98 69-170 126-225 (397)
105 KOG0531 Protein phosphatase 1, 96.9 0.00017 3.7E-09 77.1 -1.2 83 385-475 89-171 (414)
106 PF14516 AAA_35: AAA-like doma 96.9 0.063 1.4E-06 55.3 17.4 170 1-180 41-246 (331)
107 PRK14969 DNA polymerase III su 96.8 0.0099 2.2E-07 65.0 12.0 105 68-176 117-224 (527)
108 PRK09112 DNA polymerase III su 96.8 0.016 3.4E-07 59.8 12.8 99 69-173 140-240 (351)
109 KOG3665 ZYG-1-like serine/thre 96.8 0.00055 1.2E-08 76.6 2.4 161 466-662 122-287 (699)
110 PRK14956 DNA polymerase III su 96.8 0.0065 1.4E-07 64.3 10.1 97 68-168 119-217 (484)
111 PF00308 Bac_DnaA: Bacterial d 96.8 0.0097 2.1E-07 57.2 10.6 151 1-173 44-208 (219)
112 PRK14959 DNA polymerase III su 96.8 0.014 3E-07 64.1 12.8 106 68-177 117-225 (624)
113 PRK12422 chromosomal replicati 96.8 0.014 3.1E-07 62.2 12.5 126 1-144 151-288 (445)
114 KOG1859 Leucine-rich repeat pr 96.8 0.00014 2.9E-09 77.9 -2.9 103 367-475 177-288 (1096)
115 TIGR00767 rho transcription te 96.8 0.003 6.4E-08 64.9 6.6 78 1-79 178-264 (415)
116 PRK05896 DNA polymerase III su 96.7 0.018 4E-07 62.7 12.9 102 70-175 119-223 (605)
117 PF05621 TniB: Bacterial TniB 96.7 0.018 4E-07 56.7 11.7 165 1-168 71-256 (302)
118 PRK00440 rfc replication facto 96.7 0.022 4.8E-07 58.7 13.2 97 70-170 102-200 (319)
119 KOG0531 Protein phosphatase 1, 96.7 0.00029 6.2E-09 75.4 -1.0 204 348-593 70-286 (414)
120 PRK13341 recombination factor 96.7 0.0096 2.1E-07 67.2 11.0 93 69-167 108-211 (725)
121 TIGR00362 DnaA chromosomal rep 96.7 0.022 4.7E-07 60.8 13.0 149 1-171 146-308 (405)
122 PRK09111 DNA polymerase III su 96.7 0.021 4.6E-07 63.1 13.0 100 69-172 131-232 (598)
123 TIGR02903 spore_lon_C ATP-depe 96.6 0.029 6.4E-07 62.6 14.1 84 58-141 280-367 (615)
124 PRK08116 hypothetical protein; 96.6 0.0089 1.9E-07 59.3 8.7 95 1-110 124-221 (268)
125 KOG1859 Leucine-rich repeat pr 96.6 5.6E-05 1.2E-09 80.7 -7.1 18 408-425 102-119 (1096)
126 COG3267 ExeA Type II secretory 96.6 0.053 1.1E-06 51.6 13.0 167 1-174 61-246 (269)
127 PRK14088 dnaA chromosomal repl 96.6 0.03 6.5E-07 59.9 13.0 149 1-170 140-302 (440)
128 KOG2028 ATPase related to the 96.5 0.017 3.6E-07 57.3 9.8 118 1-140 172-294 (554)
129 PRK14953 DNA polymerase III su 96.5 0.055 1.2E-06 58.5 14.7 102 68-173 117-220 (486)
130 PRK14954 DNA polymerase III su 96.5 0.032 7E-07 61.8 13.1 97 68-168 125-223 (620)
131 CHL00181 cbbX CbbX; Provisiona 96.5 0.046 1E-06 54.9 13.2 71 72-142 124-211 (287)
132 COG1373 Predicted ATPase (AAA+ 96.5 0.022 4.7E-07 60.1 11.3 64 70-136 94-163 (398)
133 PRK06620 hypothetical protein; 96.5 0.022 4.8E-07 54.4 10.4 90 72-167 87-183 (214)
134 PRK07764 DNA polymerase III su 96.5 0.035 7.5E-07 63.7 13.5 97 68-168 118-216 (824)
135 PF12799 LRR_4: Leucine Rich r 96.4 0.0031 6.7E-08 42.8 3.0 33 536-571 2-34 (44)
136 PRK14970 DNA polymerase III su 96.4 0.055 1.2E-06 56.9 13.8 96 69-168 107-204 (367)
137 TIGR02880 cbbX_cfxQ probable R 96.4 0.045 9.8E-07 54.9 12.4 71 71-141 122-209 (284)
138 PRK14950 DNA polymerase III su 96.4 0.047 1E-06 60.9 13.6 101 69-173 119-221 (585)
139 PRK14952 DNA polymerase III su 96.3 0.058 1.3E-06 59.4 13.5 105 69-177 117-224 (584)
140 PRK08451 DNA polymerase III su 96.3 0.073 1.6E-06 57.7 13.8 101 69-173 116-218 (535)
141 PRK14948 DNA polymerase III su 96.2 0.077 1.7E-06 59.2 14.2 101 69-173 120-222 (620)
142 KOG1644 U2-associated snRNP A' 96.2 0.0086 1.9E-07 54.5 5.5 111 559-688 40-154 (233)
143 PRK06305 DNA polymerase III su 96.2 0.048 1E-06 58.5 12.1 96 69-168 120-217 (451)
144 COG5238 RNA1 Ran GTPase-activa 96.2 0.0039 8.5E-08 59.2 3.4 41 385-425 86-130 (388)
145 PRK14086 dnaA chromosomal repl 96.2 0.095 2.1E-06 57.4 14.3 145 1-167 324-482 (617)
146 KOG2982 Uncharacterized conser 96.2 0.0017 3.6E-08 62.4 0.9 18 558-575 246-263 (418)
147 PRK00149 dnaA chromosomal repl 96.2 0.025 5.4E-07 61.2 10.0 149 1-171 158-320 (450)
148 KOG1644 U2-associated snRNP A' 96.2 0.0095 2.1E-07 54.2 5.5 89 529-629 58-149 (233)
149 KOG2123 Uncharacterized conser 96.2 0.00022 4.8E-09 67.6 -5.1 108 533-657 17-124 (388)
150 smart00382 AAA ATPases associa 96.1 0.018 3.9E-07 50.9 7.3 79 1-83 12-91 (148)
151 PRK07133 DNA polymerase III su 96.1 0.084 1.8E-06 59.0 13.5 102 69-174 117-221 (725)
152 PRK04132 replication factor C 96.1 0.14 3E-06 58.6 15.3 149 1-170 576-728 (846)
153 PRK08769 DNA polymerase III su 96.1 0.073 1.6E-06 53.9 11.8 96 69-174 112-209 (319)
154 PF00004 AAA: ATPase family as 96.0 0.017 3.8E-07 50.4 6.3 13 1-13 8-20 (132)
155 PRK14971 DNA polymerase III su 95.9 0.12 2.6E-06 57.6 13.9 97 69-169 120-218 (614)
156 PF05496 RuvB_N: Holliday junc 95.9 0.045 9.7E-07 51.5 8.7 72 102-177 152-225 (233)
157 PF04665 Pox_A32: Poxvirus A32 95.8 0.016 3.4E-07 55.7 5.5 27 1-29 23-49 (241)
158 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.063 1.4E-06 48.1 8.9 108 1-111 12-139 (159)
159 KOG2982 Uncharacterized conser 95.8 0.0037 8E-08 60.1 1.1 86 491-594 68-156 (418)
160 PRK06871 DNA polymerase III su 95.7 0.21 4.5E-06 50.8 13.5 91 69-168 106-198 (325)
161 KOG2543 Origin recognition com 95.6 0.29 6.4E-06 49.4 13.6 132 1-139 40-192 (438)
162 PRK06647 DNA polymerase III su 95.6 0.18 4E-06 55.5 13.6 99 68-170 117-217 (563)
163 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 34.7 0.6 21 392-413 1-21 (22)
164 TIGR01242 26Sp45 26S proteasom 95.5 0.072 1.6E-06 55.8 9.8 64 99-167 260-328 (364)
165 KOG0741 AAA+-type ATPase [Post 95.4 0.25 5.5E-06 51.8 12.8 118 1-139 548-685 (744)
166 PRK07399 DNA polymerase III su 95.4 0.23 4.9E-06 50.5 12.7 98 68-173 122-221 (314)
167 PRK06090 DNA polymerase III su 95.4 0.25 5.5E-06 50.0 12.9 93 69-173 107-201 (319)
168 PRK14965 DNA polymerase III su 95.4 0.2 4.4E-06 55.6 13.2 102 69-174 118-222 (576)
169 KOG2739 Leucine-rich acidic nu 95.4 0.008 1.7E-07 57.1 1.8 58 385-444 59-118 (260)
170 PRK08058 DNA polymerase III su 95.4 0.11 2.5E-06 53.4 10.4 71 69-139 109-181 (329)
171 TIGR02881 spore_V_K stage V sp 95.3 0.1 2.3E-06 51.8 9.7 71 72-142 107-193 (261)
172 PRK06964 DNA polymerase III su 95.3 0.39 8.5E-06 49.2 13.7 93 69-173 131-225 (342)
173 PHA02544 44 clamp loader, smal 95.2 0.12 2.5E-06 53.2 10.1 70 69-138 99-171 (316)
174 PRK07993 DNA polymerase III su 95.1 0.28 6.1E-06 50.4 12.2 93 68-169 106-200 (334)
175 PRK08181 transposase; Validate 95.1 0.044 9.6E-07 54.1 6.1 92 1-110 116-209 (269)
176 PRK06921 hypothetical protein; 95.1 0.079 1.7E-06 52.5 7.9 27 1-29 127-154 (266)
177 PF13177 DNA_pol3_delta2: DNA 95.1 0.1 2.2E-06 47.5 8.0 60 69-128 101-162 (162)
178 TIGR03689 pup_AAA proteasome A 95.0 0.29 6.2E-06 52.9 12.3 128 1-140 226-378 (512)
179 PF05673 DUF815: Protein of un 94.9 0.3 6.4E-06 46.8 10.9 46 68-113 104-154 (249)
180 KOG2227 Pre-initiation complex 94.9 0.59 1.3E-05 48.6 13.6 173 1-177 185-376 (529)
181 PRK07952 DNA replication prote 94.9 0.057 1.2E-06 52.5 6.2 93 1-109 109-204 (244)
182 PRK12608 transcription termina 94.8 0.13 2.7E-06 52.8 8.6 77 1-79 143-229 (380)
183 PRK12377 putative replication 94.8 0.039 8.5E-07 53.8 4.8 92 1-109 111-205 (248)
184 PRK05563 DNA polymerase III su 94.7 0.48 1E-05 52.5 13.7 97 68-168 117-215 (559)
185 KOG3864 Uncharacterized conser 94.7 0.0022 4.7E-08 58.3 -3.7 16 649-664 150-165 (221)
186 PRK08939 primosomal protein Dn 94.7 0.085 1.8E-06 53.4 7.2 91 1-109 166-260 (306)
187 PF13191 AAA_16: AAA ATPase do 94.7 0.048 1E-06 50.9 5.1 18 1-20 34-51 (185)
188 PF08423 Rad51: Rad51; InterP 94.6 0.12 2.7E-06 50.8 7.9 45 1-46 48-96 (256)
189 cd01133 F1-ATPase_beta F1 ATP 94.6 0.15 3.3E-06 50.1 8.2 77 1-79 79-172 (274)
190 KOG4579 Leucine-rich repeat (L 94.5 0.0016 3.6E-08 55.1 -4.7 110 535-668 27-140 (177)
191 PF00560 LRR_1: Leucine Rich R 94.4 0.02 4.3E-07 32.1 1.0 22 416-438 1-22 (22)
192 PRK04296 thymidine kinase; Pro 94.2 0.051 1.1E-06 50.9 4.0 105 1-112 12-118 (190)
193 KOG2739 Leucine-rich acidic nu 94.0 0.024 5.3E-07 53.9 1.4 108 389-501 41-150 (260)
194 KOG3864 Uncharacterized conser 94.0 0.0073 1.6E-07 55.0 -2.1 89 562-665 102-191 (221)
195 PF07693 KAP_NTPase: KAP famil 93.9 1.2 2.7E-05 45.8 14.1 79 61-139 161-262 (325)
196 TIGR02237 recomb_radB DNA repa 93.9 0.18 4E-06 48.1 7.3 37 1-40 22-58 (209)
197 COG5238 RNA1 Ran GTPase-activa 93.8 0.028 6.1E-07 53.6 1.4 210 458-686 22-254 (388)
198 PRK09361 radB DNA repair and r 93.7 0.2 4.4E-06 48.5 7.2 35 1-38 33-67 (225)
199 KOG2123 Uncharacterized conser 93.7 0.0045 9.8E-08 58.9 -4.0 60 386-448 36-97 (388)
200 PF01695 IstB_IS21: IstB-like 93.7 0.031 6.7E-07 51.7 1.4 92 1-110 57-150 (178)
201 PRK09183 transposase/IS protei 93.7 0.14 3.1E-06 50.5 6.2 92 1-110 112-206 (259)
202 KOG4579 Leucine-rich repeat (L 93.6 0.012 2.5E-07 50.1 -1.3 81 326-425 53-133 (177)
203 KOG0989 Replication factor C, 93.6 0.19 4E-06 49.2 6.5 91 72-166 131-223 (346)
204 PRK03992 proteasome-activating 93.5 0.36 7.8E-06 50.9 9.3 43 100-142 270-317 (389)
205 PRK11331 5-methylcytosine-spec 93.5 0.088 1.9E-06 55.3 4.5 80 1-84 204-286 (459)
206 PTZ00361 26 proteosome regulat 93.5 0.23 4.9E-06 52.8 7.6 43 99-141 321-368 (438)
207 PF13504 LRR_7: Leucine rich r 93.2 0.055 1.2E-06 28.1 1.3 16 392-408 2-17 (17)
208 TIGR02640 gas_vesic_GvpN gas v 93.2 0.86 1.9E-05 45.2 10.8 33 1-38 31-63 (262)
209 PRK10536 hypothetical protein; 93.1 0.2 4.3E-06 48.5 6.0 42 66-110 169-213 (262)
210 PF02562 PhoH: PhoH-like prote 93.1 0.068 1.5E-06 50.1 2.7 106 1-110 29-156 (205)
211 PRK08699 DNA polymerase III su 92.9 1.3 2.8E-05 45.3 11.9 70 70-139 113-184 (325)
212 PRK10865 protein disaggregatio 92.9 0.3 6.5E-06 57.0 8.1 101 1-109 608-720 (857)
213 cd01394 radB RadB. The archaea 92.9 0.32 6.9E-06 46.8 7.2 32 1-34 29-60 (218)
214 PTZ00202 tuzin; Provisional 92.7 0.46 1E-05 49.5 8.1 127 1-138 296-432 (550)
215 PRK06526 transposase; Provisio 92.7 0.19 4.1E-06 49.4 5.3 13 1-13 108-120 (254)
216 TIGR02238 recomb_DMC1 meiotic 92.7 0.3 6.4E-06 49.6 6.8 46 1-47 106-155 (313)
217 cd01120 RecA-like_NTPases RecA 92.5 0.47 1E-05 42.9 7.6 32 1-34 9-40 (165)
218 cd01393 recA_like RecA is a b 92.4 0.35 7.6E-06 46.8 6.8 37 1-39 29-71 (226)
219 PRK05541 adenylylsulfate kinas 92.4 0.23 5E-06 46.0 5.2 26 1-28 17-42 (176)
220 COG0470 HolB ATPase involved i 92.3 0.35 7.7E-06 49.8 7.2 108 1-126 34-167 (325)
221 PTZ00454 26S protease regulato 92.2 0.72 1.6E-05 48.6 9.3 43 99-141 283-330 (398)
222 PRK06835 DNA replication prote 92.2 0.27 5.9E-06 50.2 5.9 93 1-109 193-288 (329)
223 TIGR03346 chaperone_ClpB ATP-d 92.2 0.26 5.7E-06 57.7 6.6 101 1-109 605-717 (852)
224 TIGR02639 ClpA ATP-dependent C 92.1 0.57 1.2E-05 54.0 9.1 84 1-95 494-578 (731)
225 COG0542 clpA ATP-binding subun 91.9 0.17 3.7E-06 56.8 4.3 89 1-97 531-620 (786)
226 PLN03187 meiotic recombination 91.9 0.49 1.1E-05 48.6 7.3 46 1-47 136-185 (344)
227 TIGR03345 VI_ClpV1 type VI sec 91.9 1.6 3.4E-05 51.0 12.3 121 1-139 218-362 (852)
228 PRK08118 topology modulation p 91.8 0.057 1.2E-06 49.4 0.5 26 1-26 11-37 (167)
229 PF13504 LRR_7: Leucine rich r 91.6 0.12 2.6E-06 26.8 1.4 17 650-667 1-17 (17)
230 TIGR00708 cobA cob(I)alamin ad 91.6 1.1 2.4E-05 40.7 8.5 107 1-110 15-140 (173)
231 cd00544 CobU Adenosylcobinamid 91.6 0.32 6.9E-06 44.4 5.1 142 1-168 9-167 (169)
232 cd01123 Rad51_DMC1_radA Rad51_ 91.5 0.78 1.7E-05 44.7 8.2 40 1-40 29-72 (235)
233 KOG1514 Origin recognition com 91.5 2.5 5.4E-05 46.5 12.2 136 1-142 432-591 (767)
234 CHL00095 clpC Clp protease ATP 91.4 0.28 6E-06 57.3 5.7 101 1-109 549-661 (821)
235 COG0468 RecA RecA/RadA recombi 91.4 0.83 1.8E-05 45.2 8.0 76 1-79 70-150 (279)
236 TIGR03345 VI_ClpV1 type VI sec 91.0 0.26 5.7E-06 57.4 4.9 101 1-109 606-718 (852)
237 TIGR00602 rad24 checkpoint pro 90.8 0.82 1.8E-05 51.0 8.2 21 120-140 267-287 (637)
238 PLN03186 DNA repair protein RA 90.6 0.73 1.6E-05 47.3 7.1 46 1-47 133-182 (342)
239 cd03214 ABC_Iron-Siderophores_ 90.6 1.5 3.3E-05 40.6 8.8 110 1-113 35-161 (180)
240 cd01122 GP4d_helicase GP4d_hel 90.6 1.4 3.1E-05 44.0 9.2 42 1-46 40-82 (271)
241 cd00983 recA RecA is a bacter 90.5 0.31 6.6E-06 49.4 4.2 70 1-79 65-142 (325)
242 PF07724 AAA_2: AAA domain (Cd 90.4 0.14 3.1E-06 46.8 1.7 80 1-95 13-104 (171)
243 PRK07132 DNA polymerase III su 90.4 3.3 7.1E-05 41.8 11.4 95 69-173 89-185 (299)
244 cd01135 V_A-ATPase_B V/A-type 89.8 1.4 3.1E-05 43.3 8.0 79 1-79 79-175 (276)
245 cd03228 ABCC_MRP_Like The MRP 89.7 1.3 2.7E-05 40.8 7.4 54 62-115 106-160 (171)
246 TIGR02639 ClpA ATP-dependent C 89.7 3 6.6E-05 48.2 11.9 123 1-140 213-358 (731)
247 TIGR02239 recomb_RAD51 DNA rep 89.4 1.2 2.5E-05 45.5 7.5 46 1-47 106-155 (316)
248 KOG0735 AAA+-type ATPase [Post 89.4 0.51 1.1E-05 51.5 4.9 61 1-79 441-503 (952)
249 COG2812 DnaX DNA polymerase II 89.3 1.3 2.8E-05 47.8 7.9 94 69-166 118-213 (515)
250 COG2255 RuvB Holliday junction 89.1 12 0.00025 36.8 13.2 64 102-169 154-219 (332)
251 PF13306 LRR_5: Leucine rich r 89.1 1.7 3.8E-05 37.4 7.5 81 530-628 7-89 (129)
252 cd03247 ABCC_cytochrome_bd The 89.0 1.6 3.4E-05 40.5 7.5 56 59-114 105-161 (178)
253 PRK04301 radA DNA repair and r 88.8 1.8 4E-05 44.3 8.5 45 1-46 112-160 (317)
254 CHL00176 ftsH cell division pr 88.8 2.1 4.6E-05 48.1 9.5 98 63-165 268-386 (638)
255 PF00448 SRP54: SRP54-type pro 88.7 4.4 9.4E-05 38.1 10.3 45 1-47 11-56 (196)
256 KOG1051 Chaperone HSP104 and r 88.7 0.64 1.4E-05 53.2 5.4 84 1-95 601-685 (898)
257 TIGR02012 tigrfam_recA protein 88.7 0.65 1.4E-05 47.1 4.9 72 1-79 65-142 (321)
258 CHL00095 clpC Clp protease ATP 88.5 2.3 4.9E-05 49.9 10.0 123 1-139 210-353 (821)
259 PRK09354 recA recombinase A; P 88.4 0.74 1.6E-05 47.1 5.2 72 1-79 70-147 (349)
260 PF07728 AAA_5: AAA domain (dy 88.3 0.14 3E-06 45.3 -0.1 81 1-94 9-89 (139)
261 COG2607 Predicted ATPase (AAA+ 88.3 2.9 6.3E-05 39.7 8.4 83 1-110 95-183 (287)
262 PRK07261 topology modulation p 88.2 0.86 1.9E-05 41.8 5.1 13 1-13 10-22 (171)
263 PRK05986 cob(I)alamin adenolsy 88.2 2.7 5.8E-05 38.9 8.2 52 59-110 103-158 (191)
264 cd03223 ABCD_peroxisomal_ALDP 87.8 2.8 6.1E-05 38.2 8.3 106 1-114 37-152 (166)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.7 2.4 5.2E-05 37.6 7.5 95 1-114 36-131 (144)
266 smart00370 LRR Leucine-rich re 87.7 0.4 8.7E-06 28.0 1.7 19 391-410 2-20 (26)
267 smart00369 LRR_TYP Leucine-ric 87.7 0.4 8.7E-06 28.0 1.7 19 391-410 2-20 (26)
268 PRK05800 cobU adenosylcobinami 87.5 0.59 1.3E-05 42.8 3.5 144 1-170 11-169 (170)
269 TIGR02236 recomb_radA DNA repa 87.5 2.1 4.6E-05 43.7 8.0 45 1-46 105-153 (310)
270 KOG0744 AAA+-type ATPase [Post 87.4 5.8 0.00012 39.5 10.1 69 1-79 187-259 (423)
271 COG1066 Sms Predicted ATP-depe 87.3 1.1 2.3E-05 46.1 5.4 70 1-79 103-177 (456)
272 COG1222 RPT1 ATP-dependent 26S 87.3 2.3 5.1E-05 42.8 7.6 151 1-177 195-371 (406)
273 PRK06067 flagellar accessory p 87.2 2 4.4E-05 41.8 7.4 75 1-80 35-130 (234)
274 PF10443 RNA12: RNA12 protein; 86.8 22 0.00047 37.4 14.6 112 71-184 149-289 (431)
275 PRK07276 DNA polymerase III su 86.8 7.2 0.00016 39.0 10.9 69 68-137 102-172 (290)
276 TIGR03346 chaperone_ClpB ATP-d 86.7 3.6 7.7E-05 48.4 10.2 123 1-140 204-349 (852)
277 PRK12597 F0F1 ATP synthase sub 86.5 2.2 4.8E-05 45.5 7.6 78 1-79 153-246 (461)
278 PTZ00035 Rad51 protein; Provis 86.4 2.8 6E-05 43.2 8.1 46 1-47 128-177 (337)
279 PHA00729 NTP-binding motif con 86.3 1.6 3.4E-05 41.7 5.7 13 1-13 27-39 (226)
280 COG1484 DnaC DNA replication p 86.3 1.9 4E-05 42.5 6.5 71 1-88 115-185 (254)
281 cd03216 ABC_Carb_Monos_I This 86.3 1.4 3.1E-05 40.0 5.4 107 1-114 36-146 (163)
282 CHL00195 ycf46 Ycf46; Provisio 86.0 5 0.00011 43.6 10.1 95 69-167 317-429 (489)
283 PF00154 RecA: recA bacterial 86.0 1.7 3.6E-05 44.1 6.0 72 1-79 63-140 (322)
284 COG0396 sufC Cysteine desulfur 86.0 5.9 0.00013 37.5 9.0 60 62-123 154-217 (251)
285 smart00367 LRR_CC Leucine-rich 85.8 0.41 8.8E-06 28.1 1.0 18 673-690 1-18 (26)
286 TIGR01243 CDC48 AAA family ATP 85.7 5.1 0.00011 46.4 10.7 141 1-167 497-657 (733)
287 PRK11034 clpA ATP-dependent Cl 85.6 3 6.6E-05 47.8 8.6 124 1-140 217-362 (758)
288 cd03222 ABC_RNaseL_inhibitor T 85.5 2.6 5.6E-05 38.9 6.7 100 1-115 35-137 (177)
289 TIGR01241 FtsH_fam ATP-depende 85.4 8.6 0.00019 42.2 11.9 68 100-172 193-266 (495)
290 cd03246 ABCC_Protease_Secretio 84.9 2 4.3E-05 39.5 5.7 56 59-114 103-160 (173)
291 cd01131 PilT Pilus retraction 84.7 1.2 2.6E-05 42.0 4.2 100 1-112 11-111 (198)
292 COG4608 AppF ABC-type oligopep 84.5 2.9 6.4E-05 40.7 6.7 113 1-116 49-176 (268)
293 COG0125 Tmk Thymidylate kinase 84.4 3.6 7.7E-05 38.9 7.2 42 1-44 13-54 (208)
294 TIGR00763 lon ATP-dependent pr 84.4 5.6 0.00012 46.3 10.2 22 119-140 484-505 (775)
295 KOG2228 Origin recognition com 84.2 5.2 0.00011 40.1 8.2 137 1-140 59-219 (408)
296 TIGR01040 V-ATPase_V1_B V-type 83.9 3.1 6.8E-05 44.0 7.1 79 1-79 151-256 (466)
297 smart00370 LRR Leucine-rich re 83.8 0.68 1.5E-05 27.0 1.3 21 414-435 1-21 (26)
298 smart00369 LRR_TYP Leucine-ric 83.8 0.68 1.5E-05 27.0 1.3 21 414-435 1-21 (26)
299 TIGR03305 alt_F1F0_F1_bet alte 83.7 3.7 8E-05 43.6 7.6 78 1-79 148-241 (449)
300 TIGR01243 CDC48 AAA family ATP 83.5 4.4 9.5E-05 47.0 8.9 43 120-167 339-381 (733)
301 TIGR03499 FlhF flagellar biosy 83.3 2.9 6.3E-05 41.9 6.5 75 1-79 204-281 (282)
302 cd01121 Sms Sms (bacterial rad 83.2 2.8 6E-05 43.8 6.5 30 1-32 92-121 (372)
303 cd03115 SRP The signal recogni 83.1 2.6 5.6E-05 38.7 5.7 28 1-30 10-37 (173)
304 PF13207 AAA_17: AAA domain; P 83.0 0.62 1.4E-05 39.8 1.4 13 1-13 9-21 (121)
305 PF07726 AAA_3: ATPase family 82.9 0.42 9E-06 40.8 0.2 20 1-22 9-28 (131)
306 PRK11034 clpA ATP-dependent Cl 82.7 1.7 3.7E-05 49.8 5.0 84 1-95 498-582 (758)
307 PF08303 tRNA_lig_kinase: tRNA 82.6 5.7 0.00012 35.6 7.1 37 1-46 9-50 (168)
308 PRK08233 hypothetical protein; 82.5 2.7 5.7E-05 38.9 5.6 13 1-13 13-25 (182)
309 cd03282 ABC_MSH4_euk MutS4 hom 82.5 1.7 3.7E-05 41.2 4.3 47 69-117 107-158 (204)
310 PRK13695 putative NTPase; Prov 82.3 1.4 3E-05 40.7 3.5 14 1-14 10-23 (174)
311 cd01125 repA Hexameric Replica 82.3 6.1 0.00013 38.6 8.2 133 1-135 11-199 (239)
312 PRK14722 flhF flagellar biosyn 82.3 2.8 6E-05 43.6 5.9 77 1-81 147-226 (374)
313 PF13306 LRR_5: Leucine rich r 82.2 1.8 3.8E-05 37.4 4.0 81 529-628 29-111 (129)
314 TIGR02858 spore_III_AA stage I 81.9 2.3 4.9E-05 42.2 5.0 106 1-115 121-234 (270)
315 PF13481 AAA_25: AAA domain; P 81.9 3.7 8E-05 38.4 6.4 32 1-32 42-81 (193)
316 CHL00060 atpB ATP synthase CF1 81.9 3.1 6.7E-05 44.6 6.2 42 1-44 171-214 (494)
317 PRK12723 flagellar biosynthesi 81.7 6.3 0.00014 41.3 8.4 80 1-82 184-266 (388)
318 PRK08972 fliI flagellum-specif 81.6 4 8.8E-05 43.1 6.9 75 1-79 172-261 (444)
319 TIGR03878 thermo_KaiC_2 KaiC d 81.4 3.7 8E-05 40.6 6.3 31 1-33 46-76 (259)
320 PRK09280 F0F1 ATP synthase sub 81.4 5.3 0.00011 42.6 7.7 77 1-79 154-247 (463)
321 TIGR03877 thermo_KaiC_1 KaiC d 81.2 4.9 0.00011 39.2 7.1 37 1-41 31-67 (237)
322 PF03969 AFG1_ATPase: AFG1-lik 81.1 2.1 4.6E-05 44.4 4.7 97 1-115 72-172 (362)
323 PRK09519 recA DNA recombinatio 81.1 2.6 5.7E-05 48.0 5.7 73 1-80 70-148 (790)
324 PTZ00185 ATPase alpha subunit; 80.8 6.9 0.00015 42.1 8.2 79 1-79 199-298 (574)
325 PF02223 Thymidylate_kin: Thym 80.8 4.2 9.2E-05 37.8 6.3 41 1-44 6-47 (186)
326 COG1875 NYN ribonuclease and A 80.7 2.3 4.9E-05 43.0 4.4 39 71-112 352-390 (436)
327 PF00006 ATP-synt_ab: ATP synt 80.6 5.5 0.00012 38.0 6.9 74 1-79 25-114 (215)
328 COG2842 Uncharacterized ATPase 80.6 16 0.00035 36.1 10.1 86 1-94 104-189 (297)
329 TIGR01039 atpD ATP synthase, F 80.6 7.3 0.00016 41.5 8.4 77 1-79 153-246 (461)
330 cd02027 APSK Adenosine 5'-phos 80.1 5 0.00011 35.8 6.2 13 1-13 9-21 (149)
331 PRK12678 transcription termina 80.1 2.1 4.6E-05 46.4 4.3 77 1-79 426-512 (672)
332 PRK05917 DNA polymerase III su 80.0 20 0.00042 35.9 10.8 59 69-127 94-154 (290)
333 cd03238 ABC_UvrA The excision 80.0 4.7 0.0001 37.1 6.1 64 59-124 94-161 (176)
334 cd03230 ABC_DR_subfamily_A Thi 79.9 6.3 0.00014 36.2 7.0 56 60-115 103-160 (173)
335 PRK12724 flagellar biosynthesi 79.8 5.9 0.00013 41.7 7.3 13 1-13 233-245 (432)
336 COG4088 Predicted nucleotide k 79.7 2.3 5.1E-05 39.3 3.8 13 1-13 11-23 (261)
337 PLN02924 thymidylate kinase 79.4 5.3 0.00011 38.3 6.5 41 1-44 26-68 (220)
338 PF03796 DnaB_C: DnaB-like hel 79.4 6.1 0.00013 39.1 7.3 43 1-46 29-71 (259)
339 PRK06002 fliI flagellum-specif 79.3 5.7 0.00012 42.2 7.1 76 1-79 175-263 (450)
340 PF13238 AAA_18: AAA domain; P 79.3 1 2.2E-05 38.8 1.4 13 1-13 8-20 (129)
341 PRK12726 flagellar biosynthesi 79.0 5.6 0.00012 41.2 6.7 79 1-81 216-296 (407)
342 cd03369 ABCC_NFT1 Domain 2 of 78.9 15 0.00033 34.8 9.6 55 61-115 134-189 (207)
343 PF01583 APS_kinase: Adenylyls 78.8 1.8 3.9E-05 38.7 2.9 26 1-28 12-37 (156)
344 TIGR01041 ATP_syn_B_arch ATP s 78.8 9 0.0002 41.0 8.5 79 1-79 151-247 (458)
345 PHA02244 ATPase-like protein 78.5 3.9 8.5E-05 42.1 5.4 13 1-13 129-141 (383)
346 cd02025 PanK Pantothenate kina 78.4 7.4 0.00016 37.4 7.2 31 1-33 9-41 (220)
347 cd00267 ABC_ATPase ABC (ATP-bi 78.3 3.2 7E-05 37.4 4.5 109 1-115 35-145 (157)
348 PRK13976 thymidylate kinase; P 78.0 5.9 0.00013 37.7 6.3 18 1-20 10-27 (209)
349 COG5635 Predicted NTPase (NACH 77.9 4.9 0.00011 47.2 6.9 129 64-192 299-446 (824)
350 KOG1969 DNA replication checkp 77.8 4.2 9E-05 45.0 5.7 65 1-83 336-400 (877)
351 PRK00771 signal recognition pa 77.8 7.8 0.00017 41.4 7.7 45 1-47 105-150 (437)
352 PRK11889 flhF flagellar biosyn 77.4 10 0.00023 39.5 8.1 79 1-81 251-331 (436)
353 TIGR03574 selen_PSTK L-seryl-t 77.2 3.8 8.2E-05 40.3 5.0 13 1-13 9-21 (249)
354 PRK10867 signal recognition pa 76.9 5 0.00011 42.7 6.0 13 1-13 110-122 (433)
355 PRK10787 DNA-binding ATP-depen 76.8 12 0.00026 43.5 9.4 128 1-140 359-506 (784)
356 cd03244 ABCC_MRP_domain2 Domai 76.8 13 0.00029 35.6 8.6 54 62-115 149-203 (221)
357 cd03215 ABC_Carb_Monos_II This 76.8 12 0.00026 34.6 8.0 53 62-114 114-168 (182)
358 cd01132 F1_ATPase_alpha F1 ATP 76.7 6.7 0.00014 38.7 6.3 74 1-79 79-170 (274)
359 TIGR03498 FliI_clade3 flagella 76.5 5.2 0.00011 42.3 5.9 76 1-79 150-239 (418)
360 COG1157 FliI Flagellar biosynt 76.4 12 0.00026 38.9 8.1 75 1-79 173-262 (441)
361 COG2884 FtsE Predicted ATPase 76.3 16 0.00035 33.6 8.0 60 57-117 142-204 (223)
362 PRK12727 flagellar biosynthesi 76.2 5.8 0.00013 43.0 6.2 28 1-30 360-389 (559)
363 smart00534 MUTSac ATPase domai 76.2 17 0.00037 33.8 8.8 54 62-116 68-128 (185)
364 PRK04328 hypothetical protein; 76.1 5.7 0.00012 39.0 5.8 31 1-33 33-63 (249)
365 COG0378 HypB Ni2+-binding GTPa 75.9 4.5 9.7E-05 37.2 4.5 38 1-40 23-61 (202)
366 TIGR02902 spore_lonB ATP-depen 75.9 5 0.00011 44.3 5.9 72 69-140 174-276 (531)
367 PF12775 AAA_7: P-loop contain 75.8 1.1 2.4E-05 44.6 0.7 77 1-89 43-119 (272)
368 PRK10865 protein disaggregatio 75.7 15 0.00033 43.3 10.0 123 1-140 209-354 (857)
369 TIGR01069 mutS2 MutS2 family p 75.6 1.2 2.6E-05 51.3 1.0 103 69-180 401-508 (771)
370 PRK11823 DNA repair protein Ra 75.2 6.5 0.00014 42.3 6.4 31 1-33 90-120 (446)
371 PF13604 AAA_30: AAA domain; P 75.0 1.4 2.9E-05 41.6 1.1 38 71-110 94-131 (196)
372 PRK08927 fliI flagellum-specif 75.0 11 0.00025 40.0 7.9 75 1-79 168-257 (442)
373 PRK10875 recD exonuclease V su 74.9 6.9 0.00015 43.8 6.6 103 1-108 177-300 (615)
374 PRK00889 adenylylsulfate kinas 74.4 5.9 0.00013 36.4 5.2 13 1-13 14-26 (175)
375 cd02037 MRP-like MRP (Multiple 74.4 6.6 0.00014 35.8 5.5 30 1-32 10-39 (169)
376 cd02019 NK Nucleoside/nucleoti 74.3 1.8 3.9E-05 32.6 1.4 13 1-13 9-21 (69)
377 COG4133 CcmA ABC-type transpor 74.3 24 0.00051 32.5 8.5 53 58-110 136-190 (209)
378 PRK02118 V-type ATP synthase s 74.2 11 0.00025 39.8 7.7 75 1-79 150-240 (436)
379 TIGR00959 ffh signal recogniti 74.2 5.6 0.00012 42.3 5.5 13 1-13 109-121 (428)
380 COG1121 ZnuC ABC-type Mn/Zn tr 74.0 14 0.00031 35.9 7.7 55 58-114 145-203 (254)
381 cd01134 V_A-ATPase_A V/A-type 74.0 5.8 0.00013 40.5 5.2 39 1-43 167-206 (369)
382 smart00487 DEXDc DEAD-like hel 74.0 6.9 0.00015 36.3 5.8 13 1-13 34-46 (201)
383 PRK04196 V-type ATP synthase s 73.9 9.6 0.00021 40.9 7.2 78 1-79 153-249 (460)
384 PRK06793 fliI flagellum-specif 73.8 7.6 0.00017 41.2 6.3 77 1-80 166-256 (432)
385 PF08433 KTI12: Chromatin asso 73.8 4.5 9.8E-05 40.1 4.4 13 1-13 11-23 (270)
386 COG0563 Adk Adenylate kinase a 73.8 6.1 0.00013 36.4 5.0 14 1-14 10-23 (178)
387 TIGR01425 SRP54_euk signal rec 73.7 28 0.00061 37.0 10.4 13 1-13 110-122 (429)
388 cd03233 ABC_PDR_domain1 The pl 73.5 14 0.00031 34.8 7.7 14 1-14 43-56 (202)
389 PRK14974 cell division protein 73.5 11 0.00025 38.6 7.3 79 1-81 150-233 (336)
390 TIGR00041 DTMP_kinase thymidyl 73.4 9.9 0.00021 35.6 6.6 13 1-13 13-25 (195)
391 PRK10733 hflB ATP-dependent me 73.3 13 0.00028 42.2 8.5 42 100-141 290-336 (644)
392 TIGR03881 KaiC_arch_4 KaiC dom 73.3 9.6 0.00021 36.8 6.6 31 1-33 30-60 (229)
393 PRK07414 cob(I)yrinic acid a,c 73.2 13 0.00029 33.9 6.9 52 59-110 103-158 (178)
394 TIGR01313 therm_gnt_kin carboh 73.1 6.8 0.00015 35.5 5.2 13 1-13 8-20 (163)
395 COG1618 Predicted nucleotide k 73.0 2.8 6E-05 37.2 2.4 21 1-23 15-36 (179)
396 COG3265 GntK Gluconate kinase 72.9 8.3 0.00018 33.8 5.1 38 1-46 5-42 (161)
397 PF02367 UPF0079: Uncharacteri 72.8 2 4.3E-05 36.7 1.4 14 1-14 25-38 (123)
398 PRK06731 flhF flagellar biosyn 72.6 12 0.00026 37.1 7.0 80 1-82 85-166 (270)
399 PRK06936 type III secretion sy 72.5 12 0.00025 39.8 7.3 75 1-79 172-261 (439)
400 PF00485 PRK: Phosphoribulokin 72.4 9 0.00019 35.9 6.0 71 1-74 9-87 (194)
401 PRK08533 flagellar accessory p 72.2 16 0.00034 35.4 7.7 38 1-42 34-71 (230)
402 KOG0730 AAA+-type ATPase [Post 72.2 14 0.00029 40.8 7.7 24 119-142 594-617 (693)
403 PRK14721 flhF flagellar biosyn 72.2 12 0.00025 39.7 7.2 13 1-13 201-213 (420)
404 TIGR00064 ftsY signal recognit 72.0 17 0.00037 36.2 8.0 79 1-81 82-165 (272)
405 cd02028 UMPK_like Uridine mono 72.0 5.9 0.00013 36.6 4.5 28 1-30 9-36 (179)
406 PRK08149 ATP synthase SpaL; Va 71.7 12 0.00027 39.6 7.3 75 1-79 161-250 (428)
407 cd03217 ABC_FeS_Assembly ABC-t 71.6 11 0.00023 35.6 6.4 57 58-114 110-168 (200)
408 cd03281 ABC_MSH5_euk MutS5 hom 71.5 4 8.6E-05 39.0 3.3 49 68-116 106-160 (213)
409 PRK05703 flhF flagellar biosyn 71.4 10 0.00022 40.5 6.7 77 1-81 231-310 (424)
410 TIGR03600 phage_DnaB phage rep 71.3 22 0.00047 38.2 9.3 43 1-46 204-246 (421)
411 COG0467 RAD55 RecA-superfamily 71.1 3.5 7.6E-05 40.9 3.0 31 1-33 33-63 (260)
412 TIGR00962 atpA proton transloc 70.9 14 0.00031 40.0 7.7 75 1-79 171-262 (501)
413 cd01136 ATPase_flagellum-secre 70.7 13 0.00027 38.0 6.9 75 1-79 79-168 (326)
414 COG0572 Udk Uridine kinase [Nu 70.7 5.1 0.00011 37.8 3.7 66 1-71 18-85 (218)
415 PF00910 RNA_helicase: RNA hel 70.6 2.2 4.8E-05 35.5 1.3 13 1-13 8-20 (107)
416 PRK13973 thymidylate kinase; P 70.4 18 0.00039 34.5 7.7 13 1-13 13-25 (213)
417 CHL00059 atpA ATP synthase CF1 70.4 17 0.00036 39.1 7.9 75 1-79 151-242 (485)
418 TIGR00416 sms DNA repair prote 70.4 12 0.00025 40.4 6.9 30 1-32 104-133 (454)
419 PLN00020 ribulose bisphosphate 70.4 6.1 0.00013 40.6 4.4 13 1-13 158-170 (413)
420 cd03213 ABCG_EPDR ABCG transpo 70.3 15 0.00032 34.5 6.9 52 60-111 119-172 (194)
421 PRK08006 replicative DNA helic 70.1 18 0.0004 39.2 8.4 43 1-46 234-276 (471)
422 COG1428 Deoxynucleoside kinase 70.0 2.2 4.8E-05 39.8 1.1 13 1-13 14-26 (216)
423 PRK06217 hypothetical protein; 69.8 5.8 0.00012 36.8 4.0 14 1-14 11-24 (183)
424 TIGR00150 HI0065_YjeE ATPase, 69.7 2.5 5.4E-05 36.7 1.4 14 1-14 32-45 (133)
425 PRK05818 DNA polymerase III su 69.3 42 0.00091 32.9 9.7 59 69-127 87-147 (261)
426 PF02572 CobA_CobO_BtuR: ATP:c 68.9 7.6 0.00017 35.4 4.4 55 57-111 82-140 (172)
427 PRK05922 type III secretion sy 68.9 19 0.0004 38.3 7.8 75 1-79 167-256 (434)
428 PRK07933 thymidylate kinase; V 68.9 14 0.00031 35.2 6.5 13 1-13 10-22 (213)
429 cd01672 TMPK Thymidine monopho 68.6 7.6 0.00016 36.4 4.7 13 1-13 10-22 (200)
430 PTZ00088 adenylate kinase 1; P 68.5 6.1 0.00013 38.1 3.9 13 1-13 16-28 (229)
431 PRK07594 type III secretion sy 68.5 16 0.00035 38.8 7.3 39 1-43 165-204 (433)
432 PF00693 Herpes_TK: Thymidine 68.4 4 8.6E-05 40.1 2.6 14 1-14 4-17 (281)
433 TIGR03496 FliI_clade1 flagella 68.4 14 0.0003 39.2 6.8 75 1-79 147-236 (411)
434 cd03232 ABC_PDR_domain2 The pl 68.3 22 0.00048 33.2 7.7 53 59-111 115-169 (192)
435 KOG0726 26S proteasome regulat 68.3 8.7 0.00019 37.6 4.7 13 1-13 229-241 (440)
436 PF14532 Sigma54_activ_2: Sigm 68.0 3.1 6.7E-05 36.5 1.7 41 70-110 69-110 (138)
437 PRK00409 recombination and DNA 67.9 2.5 5.4E-05 48.9 1.3 103 69-180 406-513 (782)
438 PRK13849 putative crown gall t 67.9 17 0.00037 35.2 6.9 36 1-38 12-47 (231)
439 COG0542 clpA ATP-binding subun 67.8 14 0.0003 42.2 6.9 125 1-139 201-345 (786)
440 cd03283 ABC_MutS-like MutS-lik 67.7 30 0.00064 32.6 8.4 46 69-116 104-154 (199)
441 TIGR03324 alt_F1F0_F1_al alter 67.7 22 0.00049 38.3 8.2 75 1-79 172-263 (497)
442 TIGR01447 recD exodeoxyribonuc 67.6 9.6 0.00021 42.5 5.7 33 73-108 262-294 (586)
443 PRK05973 replicative DNA helic 67.6 9 0.0002 37.1 4.9 30 1-32 74-103 (237)
444 TIGR01420 pilT_fam pilus retra 67.4 7.2 0.00016 40.4 4.5 75 1-81 132-206 (343)
445 cd03287 ABC_MSH3_euk MutS3 hom 67.1 28 0.0006 33.5 8.1 47 69-116 109-160 (222)
446 PRK09099 type III secretion sy 67.0 13 0.00029 39.5 6.4 76 1-79 173-262 (441)
447 COG1192 Soj ATPases involved i 67.0 5.2 0.00011 39.6 3.3 31 1-33 13-44 (259)
448 PRK03846 adenylylsulfate kinas 66.9 11 0.00024 35.5 5.3 26 1-28 34-59 (198)
449 TIGR03522 GldA_ABC_ATP gliding 66.8 30 0.00066 35.1 8.8 52 63-114 144-196 (301)
450 KOG1564 DNA repair protein RHP 66.6 28 0.0006 34.1 7.7 45 1-46 112-160 (351)
451 PRK06995 flhF flagellar biosyn 66.6 16 0.00035 39.5 6.9 78 1-80 266-344 (484)
452 PRK10646 ADP-binding protein; 66.5 3.1 6.8E-05 37.0 1.4 14 1-14 38-51 (153)
453 cd00984 DnaB_C DnaB helicase C 66.1 28 0.00062 33.8 8.3 41 1-45 23-64 (242)
454 PF01202 SKI: Shikimate kinase 65.9 3.1 6.6E-05 37.6 1.2 18 1-20 2-19 (158)
455 PF13671 AAA_33: AAA domain; P 65.8 3.6 7.8E-05 36.2 1.7 13 1-13 9-21 (143)
456 PRK08506 replicative DNA helic 65.8 36 0.00078 37.0 9.6 42 1-46 202-243 (472)
457 PF03266 NTPase_1: NTPase; In 65.2 3.4 7.4E-05 37.7 1.4 13 1-13 9-21 (168)
458 PRK09281 F0F1 ATP synthase sub 65.2 22 0.00047 38.7 7.6 40 1-44 172-214 (502)
459 PRK15429 formate hydrogenlyase 65.2 11 0.00024 43.3 5.9 40 70-109 470-520 (686)
460 PRK14723 flhF flagellar biosyn 65.1 19 0.00042 41.1 7.5 78 1-80 195-273 (767)
461 PTZ00301 uridine kinase; Provi 65.1 6 0.00013 37.6 3.1 19 1-21 13-31 (210)
462 cd01124 KaiC KaiC is a circadi 65.0 6.2 0.00014 36.6 3.2 30 1-32 9-38 (187)
463 smart00364 LRR_BAC Leucine-ric 64.7 4.6 9.9E-05 23.6 1.3 17 392-409 3-19 (26)
464 KOG0073 GTP-binding ADP-ribosy 64.5 13 0.00029 33.0 4.7 14 1-14 26-39 (185)
465 PRK00698 tmk thymidylate kinas 64.2 26 0.00056 33.0 7.4 13 1-13 13-25 (205)
466 PRK06762 hypothetical protein; 64.0 3.6 7.9E-05 37.4 1.4 13 1-13 12-24 (166)
467 COG0003 ArsA Predicted ATPase 63.9 8.1 0.00018 39.3 3.9 39 1-41 12-50 (322)
468 PF00025 Arf: ADP-ribosylation 63.8 43 0.00094 30.6 8.6 14 1-14 24-37 (175)
469 KOG0733 Nuclear AAA ATPase (VC 63.8 12 0.00027 40.7 5.3 61 1-81 233-293 (802)
470 PF01656 CbiA: CobQ/CobB/MinD/ 63.6 8.1 0.00018 36.1 3.8 34 1-36 9-42 (195)
471 PRK09302 circadian clock prote 63.6 16 0.00035 40.3 6.6 30 1-32 283-312 (509)
472 COG2274 SunT ABC-type bacterio 63.6 36 0.00078 39.0 9.3 55 60-114 617-673 (709)
473 PRK05688 fliI flagellum-specif 63.4 16 0.00035 39.0 6.1 75 1-79 178-267 (451)
474 TIGR02868 CydC thiol reductant 63.1 36 0.00078 37.8 9.3 13 1-13 371-383 (529)
475 COG0464 SpoVK ATPases of the A 62.9 54 0.0012 36.0 10.5 121 1-142 286-425 (494)
476 cd02021 GntK Gluconate kinase 62.9 4.2 9.1E-05 36.2 1.5 13 1-13 9-21 (150)
477 TIGR03497 FliI_clade2 flagella 62.7 22 0.00048 37.7 7.0 75 1-79 147-236 (413)
478 COG0055 AtpD F0F1-type ATP syn 62.6 12 0.00027 38.0 4.8 80 1-82 157-253 (468)
479 cd02024 NRK1 Nicotinamide ribo 62.4 4.1 8.9E-05 37.9 1.4 13 1-13 9-21 (187)
480 COG4240 Predicted kinase [Gene 62.2 20 0.00044 33.9 5.7 68 1-70 60-133 (300)
481 PRK07196 fliI flagellum-specif 62.2 15 0.00032 39.1 5.6 13 1-13 165-177 (434)
482 PRK07721 fliI flagellum-specif 62.1 17 0.00037 38.9 6.1 37 1-40 168-204 (438)
483 PRK03839 putative kinase; Prov 62.0 4 8.6E-05 37.8 1.3 13 1-13 10-22 (180)
484 PRK13657 cyclic beta-1,2-gluca 62.0 39 0.00084 38.1 9.4 61 62-124 481-542 (588)
485 PRK08840 replicative DNA helic 61.8 34 0.00073 37.1 8.4 43 1-46 227-269 (464)
486 PRK13343 F0F1 ATP synthase sub 61.7 25 0.00055 38.1 7.3 75 1-79 172-263 (502)
487 TIGR03375 type_I_sec_LssB type 61.6 38 0.00081 39.2 9.4 49 62-110 611-661 (694)
488 PRK06547 hypothetical protein; 61.6 4.3 9.4E-05 37.2 1.4 13 1-13 25-37 (172)
489 COG1136 SalX ABC-type antimicr 61.5 52 0.0011 31.5 8.6 62 56-117 146-210 (226)
490 PF08477 Miro: Miro-like prote 61.4 4.5 9.7E-05 34.2 1.4 14 1-14 9-22 (119)
491 PRK09270 nucleoside triphospha 61.3 17 0.00036 35.2 5.5 13 1-13 43-55 (229)
492 PRK06820 type III secretion sy 61.3 42 0.0009 35.9 8.7 28 1-32 173-200 (440)
493 TIGR00455 apsK adenylylsulfate 61.0 34 0.00073 31.7 7.4 13 1-13 28-40 (184)
494 PRK07667 uridine kinase; Provi 60.9 7.9 0.00017 36.3 3.1 29 1-31 27-55 (193)
495 TIGR01026 fliI_yscN ATPase Fli 60.9 19 0.00042 38.5 6.3 13 1-13 173-185 (440)
496 PRK06761 hypothetical protein; 60.8 8.3 0.00018 38.4 3.3 13 1-13 13-25 (282)
497 COG0529 CysC Adenylylsulfate k 60.6 7 0.00015 35.4 2.4 25 1-27 33-57 (197)
498 KOG0743 AAA+-type ATPase [Post 60.6 52 0.0011 34.7 9.0 54 120-180 363-417 (457)
499 PRK13765 ATP-dependent proteas 60.5 7.1 0.00015 43.8 3.1 44 1-47 60-104 (637)
500 PRK06696 uridine kinase; Valid 60.4 9.8 0.00021 36.6 3.7 13 1-13 32-44 (223)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-70 Score=613.28 Aligned_cols=635 Identities=30% Similarity=0.435 Sum_probs=476.6
Q ss_pred CccHHHHHHHHhcChh-hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDD-VKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVA--EFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||||++++++.. +..+|+.++||.+|+.++...++..|++.++....... ..++....+.+.|+++||+||+|
T Consensus 189 GvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLD 268 (889)
T KOG4658|consen 189 GVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLD 268 (889)
T ss_pred cccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEe
Confidence 8999999999999977 99999999999999999999999999999976544322 23688889999999999999999
Q ss_pred CCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHH
Q 039822 78 DVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIG 156 (711)
Q Consensus 78 dv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 156 (711)
|||+.. +|+.+..++|....||||++|||++.|+.. +++...++++.|+.+|||.||.+.+|.... ..++.+.++|
T Consensus 269 DIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~la 345 (889)
T KOG4658|consen 269 DIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELA 345 (889)
T ss_pred cccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHH
Confidence 999975 699999999988889999999999999988 788899999999999999999999987644 3345589999
Q ss_pred HHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhh----hhhhcccchhhHHhhhhcCChhhhhHhhhhcCCCCC
Q 039822 157 REIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWE----LEEVEKGLLAPLMLSYYELPSKVKQCFAYCAVFPKD 232 (711)
Q Consensus 157 ~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~~f~~~ 232 (711)
++++++|+|+|||+.++|+.|+.+.+..+|+++.+...+. ..+..+.++.+++.||+.|+++.|.||+|||.||+|
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED 425 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPED 425 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999999865444 233457899999999999998899999999999999
Q ss_pred cccCHHHHHHHHHHcCCccc-CCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHHHHHHhhc-----cc
Q 039822 233 HEILKYDLIELWMAQGYFSE-KGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHDFARYISS-----NE 306 (711)
Q Consensus 233 ~~i~~~~l~~~w~~~g~~~~-~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~~~~~~~~-----~~ 306 (711)
+.|+++.|+.+|+||||+.+ ..+..+++.++.++.+|++++|++..... ++...|+|||++|++|.+++. ++
T Consensus 426 ~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e 503 (889)
T KOG4658|consen 426 YEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEE 503 (889)
T ss_pred cccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhcccccccc
Confidence 99999999999999999999 44678999999999999999999865443 566789999999999999998 56
Q ss_pred ceeeecc-CCccccCCCCCCCcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc
Q 039822 307 CSTIEIH-GGEESAMSPFGEKKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL 384 (711)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l 384 (711)
++++..+ +....+....| ..+|++++.++.+..++... .+++|++|.+..|.. .+..+ +..|..|+.|++|||
T Consensus 504 ~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 504 NQIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred ceEEECCcCccccccccch-hheeEEEEeccchhhccCCC--CCCccceEEEeecch--hhhhcCHHHHhhCcceEEEEC
Confidence 6555543 33334433444 58999999999999888776 678999999998742 12233 445778888888888
Q ss_pred ----------cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCC
Q 039822 385 ----------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGND 454 (711)
Q Consensus 385 ----------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~ 454 (711)
++|++|.+|+||+++++. +..+|.++++|.+|.+|++.++..+..+|..+..|++|++|.++... ...
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~ 656 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSN 656 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-ccc
Confidence 457778888888888765 88888888888888888888877666665555668888888776554 222
Q ss_pred CCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCC
Q 039822 455 RACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPP 534 (711)
Q Consensus 455 ~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (711)
....+.++..+.+|+.+.+..... .....+..+..|..+...... ...........+..+
T Consensus 657 ~~~~l~el~~Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~--------------~~~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSI--------------EGCSKRTLISSLGSL 716 (889)
T ss_pred chhhHHhhhcccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhh--------------cccccceeecccccc
Confidence 345566666677676666643211 111122222222221111000 000112234566778
Q ss_pred CCccEEEEeccCCCCCCcCcchhh-----c-CcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCC
Q 039822 535 PNLKNLAIRKYRGRRNVVPRNWVM-----S-LTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVE 608 (711)
Q Consensus 535 ~~L~~L~L~~~~~~~~~~~~~~~~-----~-l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 608 (711)
.+|+.|.+.+|...+.. ..|.. . ++++.++.+.+|.....+.+.-..|+|+.|.+..|..++.+-...-...
T Consensus 717 ~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred cCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 89999999998886521 22321 2 6677777888887777777777788999999999887766543221111
Q ss_pred CCCCCCcccCCCcccee-ecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecC
Q 039822 609 SDTDGSSVIAFPKLKHL-KFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGC 684 (711)
Q Consensus 609 ~~~~~~~~~~~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c 684 (711)
.+.. .+..|.++..+ -+.+.++++++... -..+++|+.+.+..||++..+| .+.++.+.+|
T Consensus 795 ~l~~--~i~~f~~~~~l~~~~~l~~l~~i~~~------~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 795 ELKE--LILPFNKLEGLRMLCSLGGLPQLYWL------PLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred hccc--EEecccccccceeeecCCCCceeEec------ccCccchhheehhcCcccccCc-------cccccceecc
Confidence 1000 12345556666 35554555444322 1245568888888888887766 3445555665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-56 Score=528.44 Aligned_cols=619 Identities=19% Similarity=0.262 Sum_probs=410.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEe---CCCC-----------C-HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCV---SDPF-----------D-EFRIARSIIEALTGSAPD-VAEFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~ 64 (711)
|+||||||+++|+ ++..+|++.+|+.. .... + ...+++.++.++...... ... ...++
T Consensus 217 GiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~ 290 (1153)
T PLN03210 217 GIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAME 290 (1153)
T ss_pred CCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHH
Confidence 8999999999999 88999999888752 1110 0 234555555555433211 111 24567
Q ss_pred HHcCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCC
Q 039822 65 EFVEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFESLAFFGN 144 (711)
Q Consensus 65 ~~l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 144 (711)
+.++++|+||||||||+. ..|+.+.....+.++||+||||||+++++..+++.++|+|+.++.+|||+||.+.||+..
T Consensus 291 ~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~ 368 (1153)
T PLN03210 291 ERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN 368 (1153)
T ss_pred HHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence 789999999999999774 468888776667788999999999999998877788999999999999999999999765
Q ss_pred CcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhhhhcccchhhHHhhhhcCCh-hhhhHh
Q 039822 145 SMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELEEVEKGLLAPLMLSYYELPS-KVKQCF 223 (711)
Q Consensus 145 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~~~~~ 223 (711)
.+ .+++.+++.+|+++|+|+||||+++|++|+++ +..+|+.++++.... .+..+..+|++||+.|+. ..|.||
T Consensus 369 ~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 369 SP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred CC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhh
Confidence 43 35688999999999999999999999999986 578999999875543 235799999999999987 589999
Q ss_pred hhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHHHHHHhh
Q 039822 224 AYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHDFARYIS 303 (711)
Q Consensus 224 ~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~~~~~~~ 303 (711)
+++|+||.+..++ .+..|.+.+.... +..++.|+++|||+... + .+.||+++++++++++
T Consensus 443 l~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~ 502 (1153)
T PLN03210 443 RHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIV 502 (1153)
T ss_pred heehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHH
Confidence 9999999887543 3555666543332 22388899999997532 2 3799999999999997
Q ss_pred cccc-------eeeeccCCccccCCCCCCCcEEEEEEEecCCCc--ccccccccCCcccEEEeccCCCC-----------
Q 039822 304 SNEC-------STIEIHGGEESAMSPFGEKKILHLMLTLYSGAL--VPISIWDNVKGLRSLLVDCDEYS----------- 363 (711)
Q Consensus 304 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~----------- 363 (711)
.++. +.+...+..........+.+++.+++....+.. +....|..|++|+.|.+..+...
T Consensus 503 ~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~ 582 (1153)
T PLN03210 503 RAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE 582 (1153)
T ss_pred HhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCc
Confidence 6542 222111111111122233567777766554433 34455667777777777543210
Q ss_pred ----------------ccccccchhhhccCccCCcCc---------cccccccCCcEEecCCCCCCccCCccccCCccCc
Q 039822 364 ----------------WSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLM 418 (711)
Q Consensus 364 ----------------~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 418 (711)
..+..+|..+ ...+|+.|++ ..+..+.+|++|+|++|..+..+|. ++.+++|+
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 0122233333 2344555555 2334556666666666555556654 55666666
Q ss_pred eeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCce
Q 039822 419 YLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFY 498 (711)
Q Consensus 419 ~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~ 498 (711)
+|++++|..+..+|..++++++|+.|++..+.... ..+.. ..+++|+.|.++++....... ....+|+.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~---~Lp~~-i~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~ 729 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE---ILPTG-INLKSLYRLNLSGCSRLKSFP-------DISTNISW 729 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcC---ccCCc-CCCCCCCEEeCCCCCCccccc-------cccCCcCe
Confidence 66666666666666666666666666554332221 11111 145555555555543322111 11235555
Q ss_pred EEEEeecCCCCCccc----ccCCCCchhhHHHH--------hhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEE
Q 039822 499 LRLRFDDLRDGDEEQ----AGRRENEEDEDERL--------LDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRAL 566 (711)
Q Consensus 499 L~l~~~~l~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 566 (711)
|++..+.+...+... +............+ +.....+++|+.|+|++|..... + |.++..+++|+.|
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L 807 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHL 807 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEE
Confidence 555555443332110 00000000000000 01112346888888888866553 4 7778888999999
Q ss_pred eEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcccccc
Q 039822 567 VLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEI 646 (711)
Q Consensus 567 ~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 646 (711)
++++|..++.+|....+++|+.|++++|..++.++. ..++|++|++++ +.++.+|.. +
T Consensus 808 ~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------------~~~nL~~L~Ls~-n~i~~iP~s------i 865 (1153)
T PLN03210 808 EIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------------ISTNISDLNLSR-TGIEEVPWW------I 865 (1153)
T ss_pred ECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------------cccccCEeECCC-CCCccChHH------H
Confidence 999998888888766788999999998887765543 235688888877 456665543 7
Q ss_pred ccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchhhh
Q 039822 647 IIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 647 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~~~ 690 (711)
..+++|+.|++.+|++++.+|..+..+++|+.+++++|+.|++.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 78999999999999999999887778899999999999888753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.8e-38 Score=317.76 Aligned_cols=251 Identities=39% Similarity=0.633 Sum_probs=200.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP---DVAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||||.+++++..+..+|+.++||.++...+...+++.|+.++..... ...+.++....+.+.++++++|||||
T Consensus 29 G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlD 108 (287)
T PF00931_consen 29 GIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLD 108 (287)
T ss_dssp TSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEE
T ss_pred cCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccceeeee
Confidence 999999999999976699999999999999999999999999999987633 34556678899999999999999999
Q ss_pred CCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhCC-cCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHH
Q 039822 78 DVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMGS-TDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIG 156 (711)
Q Consensus 78 dv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 156 (711)
|||+.. .|+.+...++....|++||||||+..++..++. ...+++++|+.+||++||.+.++... ....+...+.+
T Consensus 109 dv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~ 185 (287)
T PF00931_consen 109 DVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLA 185 (287)
T ss_dssp EE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHH
T ss_pred eecccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 997754 788888777777789999999999998877654 67999999999999999999987655 12234556778
Q ss_pred HHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhhh---hcccchhhHHhhhhcCChhhhhHhhhhcCCCCCc
Q 039822 157 REIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELEE---VEKGLLAPLMLSYYELPSKVKQCFAYCAVFPKDH 233 (711)
Q Consensus 157 ~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~---~~~~i~~~l~~sy~~L~~~~~~~~~~~~~f~~~~ 233 (711)
++|++.|+|+||||.++|++|+.+.+...|+..++.......+ ....+..++..||+.|+++.|.||.+|++||+++
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~ 265 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGV 265 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCc
Confidence 9999999999999999999996655667899988765554432 3477899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHcCCcccCC
Q 039822 234 EILKYDLIELWMAQGYFSEKG 254 (711)
Q Consensus 234 ~i~~~~l~~~w~~~g~~~~~~ 254 (711)
.|+++.++.+|+++|++.+.+
T Consensus 266 ~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 266 PIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp -EEHHHHHHHHTT-HHTC---
T ss_pred eECHHHHHHHHHHCCCCcccC
Confidence 999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.9e-22 Score=233.77 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=138.5
Q ss_pred cEEEEEEEecCCCc-ccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 327 KILHLMLTLYSGAL-VPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 327 ~~~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
.++.|+++++.... +|. ..+++|++|++++|.. ...+|..++++++|++|++ ..++++.+|++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNML---SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCEEECcCCccccccCc---cccCCCCEEECcCCcc---cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 45555555544432 221 1345555555555432 1245666777777777777 24566777777
Q ss_pred EecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecC
Q 039822 396 LDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYG 475 (711)
Q Consensus 396 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 475 (711)
|++++|.....+|..++++++|++|++++|.....+|..++.+++|+.|++..+... ...+..+..+++|+.|.+++
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT---GPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec---cccChhHhCCCCCCEEECcC
Confidence 777776644456777777777777777777544566666777777777665443322 23455666667777776665
Q ss_pred cCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcc
Q 039822 476 LGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRN 555 (711)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 555 (711)
.. .....+..+..+++|+.|+++.|.+... ++..+..+++|+.|++++|.... ..|.
T Consensus 270 n~----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~~l~~L~~L~l~~n~~~~--~~~~ 326 (968)
T PLN00113 270 NK----LSGPIPPSIFSLQKLISLDLSDNSLSGE-----------------IPELVIQLQNLEILHLFSNNFTG--KIPV 326 (968)
T ss_pred Ce----eeccCchhHhhccCcCEEECcCCeeccC-----------------CChhHcCCCCCcEEECCCCccCC--cCCh
Confidence 32 1122334555667777777766644322 23345556667777776666554 2255
Q ss_pred hhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccc
Q 039822 556 WVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRME 595 (711)
Q Consensus 556 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~ 595 (711)
++..+++|+.|++++|.-...+|. ++.+++|+.|++++|.
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 666677777777776643334443 5566666777666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.2e-21 Score=228.46 Aligned_cols=331 Identities=16% Similarity=0.081 Sum_probs=196.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhh-hccCccCCcCcc--------ccccccCCcEE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLF-DKLTCLRALKLK--------TLCELYNLQRL 396 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~-~~l~~L~~L~l~--------~i~~L~~L~~L 396 (711)
.+++.|++.++.+.......+..+++|++|++++|... ..+|..+ .++++|++|+|+ ..+.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 36888888887766544445558889999999887432 2456554 488889998882 22467888888
Q ss_pred ecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCc
Q 039822 397 DVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGL 476 (711)
Q Consensus 397 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 476 (711)
+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+... ...+..+.++++|+.|.+.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV---GQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc---CcCChHHcCcCCccEEECcCC
Confidence 88888744478888888888888888888655678888888888888877554322 345677778888888887763
Q ss_pred CCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCC------Cch-hhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 477 GGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRE------NEE-DEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
. .....+..+..+++|+.|+++.|.+....+..+.... ... .....++..+..+++|+.|++++|....
T Consensus 223 ~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 223 N----LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred c----cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 2 1223445567788888888877754432111000000 000 0001122233334444444444444333
Q ss_pred CCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecc
Q 039822 550 NVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
..|.++..+++|+.|++++|.....+|. +..+++|+.|++++|.-...++. .+..+++|+.|+++
T Consensus 299 --~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~l~~~~~L~~L~Ls 364 (968)
T PLN00113 299 --EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------NLGKHNNLTVLDLS 364 (968)
T ss_pred --CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh------------HHhCCCCCcEEECC
Confidence 1144444444555555544432222332 44445555555544431112221 13455667777776
Q ss_pred cCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 629 DMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 629 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
++.--..+ +..+..+++|+.|++++|+....+|..+..+++|+.|++++|..
T Consensus 365 ~n~l~~~~------p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 365 TNNLTGEI------PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CCeeEeeC------ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 64321122 23355677888888888665556777777788899999888853
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.1e-23 Score=213.76 Aligned_cols=311 Identities=21% Similarity=0.202 Sum_probs=247.7
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRL 396 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L 396 (711)
+++.+|++.++....+..... .++.||++++.+|+. ....+|..+-.|..|..||| ..+..-.++-.|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~L--KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNL--KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhcccc--ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 578889998888887776665 889999999998854 33457888888999999999 446667889999
Q ss_pred ecCCCCCCccCCcc-ccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecC
Q 039822 397 DVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYG 475 (711)
Q Consensus 397 ~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 475 (711)
+|++|. |+++|.. +-+|+-|-+||+++| .+..+|+-+..|.+||+|.+.++.-. -..+..|+.++.|..|.+++
T Consensus 132 NLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 132 NLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred EcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhccc
Confidence 999976 9999976 479999999999998 89999999999999999988655433 23456666666676777765
Q ss_pred cCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcc
Q 039822 476 LGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRN 555 (711)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 555 (711)
. +......+.++..+.+|+.++++.|++.. ++..+..+++|+.|+|++|.+.+ + ..
T Consensus 207 T---qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------------------vPecly~l~~LrrLNLS~N~ite--L-~~ 262 (1255)
T KOG0444|consen 207 T---QRTLDNIPTSLDDLHNLRDVDLSENNLPI------------------VPECLYKLRNLRRLNLSGNKITE--L-NM 262 (1255)
T ss_pred c---cchhhcCCCchhhhhhhhhccccccCCCc------------------chHHHhhhhhhheeccCcCceee--e-ec
Confidence 3 33345566788889999999999885433 45677788999999999999888 5 55
Q ss_pred hhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccc
Q 039822 556 WVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELE 634 (711)
Q Consensus 556 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 634 (711)
......+|+.|+++.+ .++.+|. +..+++|+.|.+.++. +..- +. +++++.+-+|+.+...+ ++|+
T Consensus 263 ~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----Gi-----PSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFE-----GI-----PSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-cccc-----CC-----ccchhhhhhhHHHHhhc-cccc
Confidence 6667889999999998 7889997 8899999999987765 3211 11 23466777888888877 6677
Q ss_pred cccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 635 EWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 635 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
-+|.+ +..|++|+.|.+.. +.|-++|+.+.-++.|+.||++.+|+|-
T Consensus 330 lVPEg------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 330 LVPEG------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cCchh------hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 67655 88899999999986 7899999999999999999999998753
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=9.2e-20 Score=216.88 Aligned_cols=303 Identities=20% Similarity=0.210 Sum_probs=222.8
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRL 396 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L 396 (711)
.++|.|.+.++....+|..+ ...+|+.|++.++ .+..+|..+..+++|++|+| +.++.+++|++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGS----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC--CccCCcEEECcCc----cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEE
Confidence 46899999999888888776 5789999999976 45567888899999999999 456778999999
Q ss_pred ecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCc
Q 039822 397 DVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGL 476 (711)
Q Consensus 397 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 476 (711)
+|++|..+..+|..+++|++|++|++++|..++.+|..+ ++++|+.|++.++.... ..+. ...+|+.|.+.+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~---~~p~---~~~nL~~L~L~~n 735 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK---SFPD---ISTNISWLDLDET 735 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc---cccc---ccCCcCeeecCCC
Confidence 999999999999999999999999999999999999877 67888888765543221 1111 1234555555442
Q ss_pred CCCCChhhhhHhhhcCCC-------------------------------CCceEEEEeecCCCCCcccccCCCCchhhHH
Q 039822 477 GGVSDGGKAAKAELEKKK-------------------------------YLFYLRLRFDDLRDGDEEQAGRRENEEDEDE 525 (711)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~-------------------------------~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 525 (711)
.- .. .+.. ..++ +|+.|+++.|. ...
T Consensus 736 ~i-~~----lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------------~l~ 792 (1153)
T PLN03210 736 AI-EE----FPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------------SLV 792 (1153)
T ss_pred cc-cc----cccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------------Ccc
Confidence 21 00 0000 1233 34444443331 122
Q ss_pred HHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccc
Q 039822 526 RLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFL 605 (711)
Q Consensus 526 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 605 (711)
.++..++.+++|+.|+|++|..... + |..+ .+++|+.|++++|..+..+|.+ .++|+.|+++++. ++.+|..
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s-- 864 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW-- 864 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH--
Confidence 3466788899999999999876663 4 5544 7899999999999988888764 3689999998865 6666543
Q ss_pred cCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCC-------------CC
Q 039822 606 GVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHL-------------LQ 672 (711)
Q Consensus 606 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------------~~ 672 (711)
+..+++|+.|++++|++|+.++.. +..+++|+.|++.+|.+|+.++..- ..
T Consensus 865 ----------i~~l~~L~~L~L~~C~~L~~l~~~------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~ 928 (1153)
T PLN03210 865 ----------IEKFSNLSFLDMNGCNNLQRVSLN------ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSK 928 (1153)
T ss_pred ----------HhcCCCCCEEECCCCCCcCccCcc------cccccCCCeeecCCCcccccccCCCCchhhhhhccccccc
Confidence 457899999999999999988765 6689999999999999998664210 11
Q ss_pred CCCccEEEEecCcchh
Q 039822 673 KTTLQRLDIHGCPIFE 688 (711)
Q Consensus 673 ~~~L~~l~l~~c~~l~ 688 (711)
+++...+.+.+|.++.
T Consensus 929 ~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 929 LPSTVCINFINCFNLD 944 (1153)
T ss_pred CCchhccccccccCCC
Confidence 2334555677887765
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-20 Score=187.83 Aligned_cols=329 Identities=18% Similarity=0.200 Sum_probs=167.8
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
...+.|+++++.+..+....|.++++|+.+.+..| .+..+|.......||+.|+| +++..++.|++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N----~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN----ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc----hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 56788999999888887777778899999888876 45566776666667777777 44556677777
Q ss_pred EecCCCCCCccCCcc-ccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeee
Q 039822 396 LDVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSI 473 (711)
Q Consensus 396 L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 473 (711)
|||+.|. +.++|.. +..=.++++|++++| .++.+-.+ +..+.+|.+|.+..+... .-....+++|++|+.|.+
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrit---tLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRIT---TLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccc---ccCHHHhhhcchhhhhhc
Confidence 7777654 6666532 333456677777666 55554432 455555555554433332 223344455555555544
Q ss_pred cCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCC------CchhhHH-HHhhccCCCCCccEEEEeccC
Q 039822 474 YGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRE------NEEDEDE-RLLDALGPPPNLKNLAIRKYR 546 (711)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~L~~L~L~~~~ 546 (711)
.. +.+.......|.++++|+.|.+..|+++..+-..+.... ...+... ..-.++.+++.|+.|+|+.|.
T Consensus 229 nr----N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 229 NR----NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred cc----cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 42 111111123344444444444444443332211000000 0000000 111234445555555555555
Q ss_pred CCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccce
Q 039822 547 GRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKH 624 (711)
Q Consensus 547 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 624 (711)
+.+... ..| ...++|+.|+|+++ .++.++. +..+..|++|+|+.+. +.++.+.. +.++.+|+.
T Consensus 305 I~rih~-d~W-sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~~lssL~~ 369 (873)
T KOG4194|consen 305 IQRIHI-DSW-SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FVGLSSLHK 369 (873)
T ss_pred hheeec-chh-hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HHHhhhhhh
Confidence 544221 222 34455555555555 4444443 4444555555555443 44443322 224555666
Q ss_pred eecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 625 LKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 625 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
|+++. +.+. |..+. ....+..||+|+.|.+.| +++++||. .+..+..|++|++.+++-
T Consensus 370 LdLr~-N~ls-~~IED-aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 370 LDLRS-NELS-WCIED-AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hcCcC-CeEE-EEEec-chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence 66654 2232 22211 112233466666666666 56666664 444466666666665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.1e-19 Score=181.98 Aligned_cols=307 Identities=18% Similarity=0.191 Sum_probs=219.7
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccc-hhhhccCccCCcCc----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLP-QLFDKLTCLRALKL----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~L~~L~l----------~~i~~L~~L~ 394 (711)
.++..|++.++.+..+.....+-.+.||+|+|+.|.+ ..+| .+|..=.++++|+| ..+..|.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i----s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI----SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh----hcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 5788888888888877777666788888888887633 2232 33555567888887 4566777888
Q ss_pred EEecCCCCCCccCCcc-ccCCccCceeccCCCCccccc-cccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 395 RLDVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFL-SVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 395 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
+|.|+.|. +..+|.- +.+|++|+.|++..| .+..+ -..+..|..|+.|.+-.+.......+.+- .+.+++.|+
T Consensus 201 tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy---~l~kme~l~ 275 (873)
T KOG4194|consen 201 TLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY---GLEKMEHLN 275 (873)
T ss_pred eeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCccee---eecccceee
Confidence 88888876 8888764 455888888888887 55554 34567777777776654443332222222 344444555
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV 552 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 552 (711)
+.. +.........+.+++.|+.|++++|.+.... .+++..+++|+.|+|+.|...+ +
T Consensus 276 L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-----------------~d~WsftqkL~~LdLs~N~i~~--l 332 (873)
T KOG4194|consen 276 LET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-----------------IDSWSFTQKLKELDLSSNRITR--L 332 (873)
T ss_pred ccc----chhhhhhcccccccchhhhhccchhhhheee-----------------cchhhhcccceeEecccccccc--C
Confidence 543 2233344456778888888999888655443 4577778999999999999999 8
Q ss_pred CcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 553 PRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 553 ~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
++..+..+..|+.|.|+.+ .+..+.. +..+.+|+.|+|..+.--..+.+.. ....++++|+.|++.+
T Consensus 333 ~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa---------~~f~gl~~LrkL~l~g- 401 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA---------VAFNGLPSLRKLRLTG- 401 (873)
T ss_pred ChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch---------hhhccchhhhheeecC-
Confidence 7888999999999999998 5666654 7778999999999887333333211 1245799999999998
Q ss_pred cccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEe
Q 039822 631 EELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIH 682 (711)
Q Consensus 631 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~ 682 (711)
++++.++.. .+..++.|++|++.+ +-+.+|.. .+..+ .|++|.+.
T Consensus 402 Nqlk~I~kr-----Afsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 402 NQLKSIPKR-----AFSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ceeeecchh-----hhccCcccceecCCC-Ccceeecccccccc-hhhhhhhc
Confidence 789888744 577899999999999 56776644 55555 88888775
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=7.1e-20 Score=177.38 Aligned_cols=211 Identities=21% Similarity=0.173 Sum_probs=121.3
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEEe
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLD 397 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~ 397 (711)
.+..+.++++....+|..+. +...+..|++++| .+..+|..++++..|+.|+. ++++.+..|+.|+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig-~l~~l~~l~vs~n----~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIG-ELEALKSLNVSHN----KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred ceeEEEeccchhhhCCHHHH-HHHHHHHhhcccc----hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 56677777777777776665 6677777777765 34456777777777777776 5666677777777
Q ss_pred cCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcC
Q 039822 398 VTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLG 477 (711)
Q Consensus 398 l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 477 (711)
..+|+ +.++|..++++.+|..|++.+| .++.+|+..-+++.|++|+.-..- ....+.+++.+..|..|++....
T Consensus 144 ~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~----L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 144 ATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL----LETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred ccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh----hhcCChhhcchhhhHHHHhhhcc
Confidence 66654 6777777777777766666666 555566555446666666532221 12244555555555444443210
Q ss_pred C------------------CCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccE
Q 039822 478 G------------------VSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKN 539 (711)
Q Consensus 478 ~------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 539 (711)
- .+.+.....+....++++..|++..|.+ ..+|..++.+.+|++
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl------------------ke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL------------------KEVPDEICLLRSLER 279 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc------------------ccCchHHHHhhhhhh
Confidence 0 0111111222333555566666655532 233445555666666
Q ss_pred EEEeccCCCCCCcCcchhhcCcCccEEeEeC
Q 039822 540 LAIRKYRGRRNVVPRNWVMSLTNLRALVLKN 570 (711)
Q Consensus 540 L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 570 (711)
|+++++.... + |..++++ +|+.|.+.|
T Consensus 280 LDlSNN~is~--L-p~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 280 LDLSNNDISS--L-PYSLGNL-HLKFLALEG 306 (565)
T ss_pred hcccCCcccc--C-Ccccccc-eeeehhhcC
Confidence 6666666666 5 5555665 666666544
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=7.7e-20 Score=186.18 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=236.4
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~~L~~L~ 394 (711)
..++.|.+.......+|.... .+.+|..|.+.+|+ +..+-.-++.++.||.+.+ .+|-+|..|.
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~-~lqkLEHLs~~HN~----L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS-RLQKLEHLSMAHNQ----LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred hheeEEEechhhhhhChHHHH-HHhhhhhhhhhhhh----hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 467888888888888888876 88888888888874 2334445667777777777 5677889999
Q ss_pred EEecCCCCCCccCCccccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeee
Q 039822 395 RLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSI 473 (711)
Q Consensus 395 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 473 (711)
+|||++|. +++.|.++..-+++-.|++++| ++.++|.. +-+|+-|-.|+++.+.-.. .+...++|.+|+.|.+
T Consensus 107 ~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~----LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 107 ILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM----LPPQIRRLSMLQTLKL 180 (1255)
T ss_pred eeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh----cCHHHHHHhhhhhhhc
Confidence 99999876 9999999999999999999998 78889865 4677888788776654433 6677788888988888
Q ss_pred cCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcC
Q 039822 474 YGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVP 553 (711)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 553 (711)
++. .........+..+++|+.|.++..+ .....++.++..+.||..++++.|.... +
T Consensus 181 s~N----PL~hfQLrQLPsmtsL~vLhms~Tq----------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~--v- 237 (1255)
T KOG0444|consen 181 SNN----PLNHFQLRQLPSMTSLSVLHMSNTQ----------------RTLDNIPTSLDDLHNLRDVDLSENNLPI--V- 237 (1255)
T ss_pred CCC----hhhHHHHhcCccchhhhhhhccccc----------------chhhcCCCchhhhhhhhhccccccCCCc--c-
Confidence 862 2223344455666677777776542 2334456777788999999999988877 6
Q ss_pred cchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcc
Q 039822 554 RNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEE 632 (711)
Q Consensus 554 ~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 632 (711)
|+.+-++.+|+.|+|+++ .++.+.. .+...+|+.|+++.+. ++.+|.. +..+++|+.|.+.+ ++
T Consensus 238 Pecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a------------vcKL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA------------VCKLTKLTKLYANN-NK 302 (1255)
T ss_pred hHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH------------HhhhHHHHHHHhcc-Cc
Confidence 888889999999999999 6777664 6667789999999887 7777764 34678899888865 44
Q ss_pred cccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 633 LEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 633 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
|+ +.+ +|..++.+..|+.+..++ ++|+-+|+++..|..|+.|.++.+..++
T Consensus 303 L~---FeG-iPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 303 LT---FEG-IPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cc---ccC-CccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceee
Confidence 43 221 233488999999999998 7999999999999999999998876654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=2.2e-17 Score=176.50 Aligned_cols=115 Identities=24% Similarity=0.312 Sum_probs=79.4
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEEe
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLD 397 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~ 397 (711)
.+..|++..+..-..|..+..++-+|++|+++.|. +..+|..+..+.+|+.|++ .+++++.+|++|+
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~----~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ----ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccc----cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhhe
Confidence 35555555555544455554455557888887653 3456777777778887777 5677788888888
Q ss_pred cCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCee
Q 039822 398 VTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRF 447 (711)
Q Consensus 398 l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~ 447 (711)
|.++. +..+|.++..+.+|++|++++| .....|..+..++.+..+...
T Consensus 98 L~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 98 LKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred eccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhh
Confidence 88655 7888888888888888888887 666777777666666655544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=9.9e-17 Score=171.53 Aligned_cols=237 Identities=18% Similarity=0.147 Sum_probs=150.4
Q ss_pred ccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCC
Q 039822 415 RKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKK 494 (711)
Q Consensus 415 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 494 (711)
.+|++++++++ .+..+|+.++.+.+|..|+...+.... .+..+...+.|+.|.+..++- .-.+....+++
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~L~~l~~~~nel-----~yip~~le~~~ 310 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITSLVSLSAAYNEL-----EYIPPFLEGLK 310 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhhHHHHHhhhhhh-----hhCCCcccccc
Confidence 45677777777 677788778888888877765544332 455566666666665554211 22334455677
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHh------hcc--CCCCCccEEEEeccCCCCCCcCcchhhcCcCccEE
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLL------DAL--GPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRAL 566 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 566 (711)
.|++|++..|.+..++..++.............. ... ..++.|+.|.+.+|...... ...+..+++|+.|
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVL 388 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeee
Confidence 8888888888777776543322211111100000 011 12345677777777766643 3445678888888
Q ss_pred eEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcccc
Q 039822 567 VLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKG 644 (711)
Q Consensus 567 ~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 644 (711)
+|+.+ .+..+|. +..++.|++|+|+|++ ++.++.. +..++.|+.|...+ +.+..+| .
T Consensus 389 hLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t------------va~~~~L~tL~ahs-N~l~~fP-e----- 447 (1081)
T KOG0618|consen 389 HLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDT------------VANLGRLHTLRAHS-NQLLSFP-E----- 447 (1081)
T ss_pred eeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHH------------HHhhhhhHHHhhcC-Cceeech-h-----
Confidence 88888 6777776 7778888888888887 8888764 33567788887755 4555554 2
Q ss_pred ccccCCcccEEeecCCCCCcCCCcCCCCC-CCccEEEEecCcc
Q 039822 645 EIIIMPRLSFLEIGGCRKLKALPDHLLQK-TTLQRLDIHGCPI 686 (711)
Q Consensus 645 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~l~l~~c~~ 686 (711)
+..+|.|+.++++. ++|+.+-...... +.|++||++|+++
T Consensus 448 -~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 -LAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 66888888888884 6776543212223 7888888888885
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=8.3e-17 Score=156.35 Aligned_cols=265 Identities=24% Similarity=0.259 Sum_probs=153.0
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..+..+.++++....+-.... ++..+.+|.+.+| .+..+|++ ++++.+++.|+.++++ +.
T Consensus 45 v~l~~lils~N~l~~l~~dl~-nL~~l~vl~~~~n----~l~~lp~a--------------ig~l~~l~~l~vs~n~-ls 104 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK-NLACLTVLNVHDN----KLSQLPAA--------------IGELEALKSLNVSHNK-LS 104 (565)
T ss_pred cchhhhhhccCchhhccHhhh-cccceeEEEeccc----hhhhCCHH--------------HHHHHHHHHhhcccch-Hh
Confidence 356777888888887776666 8888999999876 34456755 5566677777777755 77
Q ss_pred cCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 406 ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
++|+.++++.+|++|+.+++ .+..+|++++.+..|..|+.......+ .+..+..+..|.++.+.+. .....
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~s----lp~~~~~~~~l~~l~~~~n----~l~~l 175 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISS----LPEDMVNLSKLSKLDLEGN----KLKAL 175 (565)
T ss_pred hccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcccccccc----CchHHHHHHHHHHhhcccc----chhhC
Confidence 78887888888888888777 677777777777777777654443333 4444444444444444431 11111
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccE
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRA 565 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 565 (711)
....+. ++.|++++...| .... + |.-++.+.+|+.
T Consensus 176 ~~~~i~-m~~L~~ld~~~N-----------------------------------------~L~t--l-P~~lg~l~~L~~ 210 (565)
T KOG0472|consen 176 PENHIA-MKRLKHLDCNSN-----------------------------------------LLET--L-PPELGGLESLEL 210 (565)
T ss_pred CHHHHH-HHHHHhcccchh-----------------------------------------hhhc--C-ChhhcchhhhHH
Confidence 112222 445555555444 2222 3 333344444444
Q ss_pred EeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccc
Q 039822 566 LVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGE 645 (711)
Q Consensus 566 L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 645 (711)
|++..+ ++..+|.++.+..|++|.++.+. ++.++.+.. ..+++|..|+++. ++++++|-+
T Consensus 211 LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~-----------~~L~~l~vLDLRd-Nklke~Pde------ 270 (565)
T KOG0472|consen 211 LYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHL-----------KHLNSLLVLDLRD-NKLKEVPDE------ 270 (565)
T ss_pred HHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHHh-----------cccccceeeeccc-cccccCchH------
Confidence 555444 44455555555555555555443 444444331 1455556666655 455555433
Q ss_pred cccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 646 IIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 646 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
+.-+.+|++|++++ +.+.++|..++++ +|+.|.+.|+|.
T Consensus 271 ~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 271 ICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 45555666666665 4566666555555 566666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.7e-12 Score=143.93 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCC
Q 039822 535 PNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGS 614 (711)
Q Consensus 535 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 614 (711)
.+|+.|+|++|.... + |.. .++|+.|+++++ .+..+|.+ ..+|+.|+++++. ++.+|.
T Consensus 342 ~~Lq~LdLS~N~Ls~--L-P~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~------------ 399 (788)
T PRK15387 342 SGLQELSVSDNQLAS--L-PTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV------------ 399 (788)
T ss_pred cccceEecCCCccCC--C-CCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC------------
Confidence 356666666665554 4 221 345555666555 34445542 2356666665554 433332
Q ss_pred cccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCc
Q 039822 615 SVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 615 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
..++|+.|+++++ .++.++.. +.+|+.|++++ ++++.+|..+..+++|+.|++++++
T Consensus 400 ---l~s~L~~LdLS~N-~LssIP~l---------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGN-RLTSLPML---------PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---cccCCCEEEccCC-cCCCCCcc---------hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 1245666666663 35444321 23455666666 4566666655556666666666665
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=1.1e-12 Score=148.60 Aligned_cols=308 Identities=25% Similarity=0.228 Sum_probs=195.4
Q ss_pred cEEEEEEEecC--CCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcE
Q 039822 327 KILHLMLTLYS--GALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQR 395 (711)
Q Consensus 327 ~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~ 395 (711)
+++.|.+..+. ...++..+|..++.||+|++++| .....+|..+++|-|||||++ .++++|..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~---~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN---SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC---CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 68899998886 66678888889999999999984 567789999999999999999 56889999999
Q ss_pred EecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecC
Q 039822 396 LDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYG 475 (711)
Q Consensus 396 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 475 (711)
||+..+..+..+|.....|++||+|.+.... ...-...++.+.+|++|..+.+...+ ...+..+..+..|..+...-
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch--hHhHhhhhhhHHHHHHhHhh
Confidence 9999988777777766779999999997652 11112234555666666555554333 12334444444444322211
Q ss_pred cCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcc
Q 039822 476 LGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRN 555 (711)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 555 (711)
... ..........+..+.+|+.|.+..+......... ... ..... .++++..+.+.+|...+ . +.
T Consensus 700 ~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~------~~~--~~~~~---~f~~l~~~~~~~~~~~r--~-l~ 764 (889)
T KOG4658|consen 700 SIE-GCSKRTLISSLGSLGNLEELSILDCGISEIVIEW------EES--LIVLL---CFPNLSKVSILNCHMLR--D-LT 764 (889)
T ss_pred hhc-ccccceeecccccccCcceEEEEcCCCchhhccc------ccc--cchhh---hHHHHHHHHhhcccccc--c-cc
Confidence 100 0112344567788899999999888543221100 000 00000 23456666666666666 3 67
Q ss_pred hhhcCcCccEEeEeCCCCCCCC-CCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccc
Q 039822 556 WVMSLTNLRALVLKNCRNCEHL-PPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELE 634 (711)
Q Consensus 556 ~~~~l~~L~~L~l~~~~~l~~l-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 634 (711)
|....++|+.|.+..|..++.+ |....+..++.+.+..+. +..+. .. .+.++|+++..+.+.+.. +.
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~--~~--------~~l~~l~~i~~~~l~~~~-l~ 832 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR--ML--------CSLGGLPQLYWLPLSFLK-LE 832 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce--ee--------ecCCCCceeEecccCccc-hh
Confidence 8888999999999999877654 335555555543333222 22111 00 013456666666665522 55
Q ss_pred cccccCccccccccCCcccEEeecCC-CCCcCCCcC
Q 039822 635 EWDYGTAIKGEIIIMPRLSFLEIGGC-RKLKALPDH 669 (711)
Q Consensus 635 ~~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~lp~~ 669 (711)
+|.... ....+.+|.+.++.+.+| +++..+|..
T Consensus 833 ~~~ve~--~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 833 ELIVEE--CPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred heehhc--CcccccCccccccceeccccceeecCCc
Confidence 554431 112457899999999997 778888764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-13 Score=118.72 Aligned_cols=160 Identities=26% Similarity=0.315 Sum_probs=117.9
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHS 427 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 427 (711)
+++++.-|.+++| .+...|+ .|..|.+|+.|++++|. ++++|..+++|++|++|+++-| .
T Consensus 31 ~~s~ITrLtLSHN----Kl~~vpp--------------nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-r 90 (264)
T KOG0617|consen 31 NMSNITRLTLSHN----KLTVVPP--------------NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-R 90 (264)
T ss_pred chhhhhhhhcccC----ceeecCC--------------cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-h
Confidence 6777777888876 3334553 46777889999999866 9999999999999999999877 8
Q ss_pred cccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCC
Q 039822 428 LRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLR 507 (711)
Q Consensus 428 l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 507 (711)
+..+|.+++.++.|+.|++.+..-.. ...+..+-.++.|+.|.+.+ |
T Consensus 91 l~~lprgfgs~p~levldltynnl~e--~~lpgnff~m~tlralyl~d----------------------------n--- 137 (264)
T KOG0617|consen 91 LNILPRGFGSFPALEVLDLTYNNLNE--NSLPGNFFYMTTLRALYLGD----------------------------N--- 137 (264)
T ss_pred hhcCccccCCCchhhhhhcccccccc--ccCCcchhHHHHHHHHHhcC----------------------------C---
Confidence 88999999999999999887655443 33444444555555544443 2
Q ss_pred CCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC
Q 039822 508 DGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP 579 (711)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 579 (711)
+.+.++..++.+++|+.|.++++.... + |+-++.+..|+.|.+.++ .++.+|.
T Consensus 138 ---------------dfe~lp~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 138 ---------------DFEILPPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ---------------CcccCChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccc-eeeecCh
Confidence 223345666777888888888888777 6 777888888888888887 5666664
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=4.2e-11 Score=132.89 Aligned_cols=92 Identities=24% Similarity=0.160 Sum_probs=58.3
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCcc--cccc----ccCCcEEecC
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLK--TLCE----LYNLQRLDVT 399 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~--~i~~----L~~L~~L~l~ 399 (711)
..++.|.+.++.+..+|.. .++|++|++.+|.+ ..+|.. ..+|+.|++. .+.. ..+|+.|+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~L----tsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQL----TSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCcc----CcccCc---ccccceeeccCCchhhhhhchhhcCEEECc
Confidence 3678888888888877742 57889999988743 344532 3455666651 1111 2456777777
Q ss_pred CCCCCccCCccccCCccCceeccCCCCccccccc
Q 039822 400 YCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV 433 (711)
Q Consensus 400 ~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~ 433 (711)
+|. +..+|.. +++|++|++++| .+..+|.
T Consensus 291 ~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 291 GNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred CCc-ccccccc---ccccceeECCCC-ccccCCC
Confidence 765 6677652 456777777776 5565654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=1.6e-11 Score=137.13 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=39.8
Q ss_pred EEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccC
Q 039822 328 ILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEEL 407 (711)
Q Consensus 328 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~l 407 (711)
...+.+.+.....+|.... +.|+.|++++|. +..+|..+ ..+|++|++++|. +..+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~----LtsLP~~l----------------~~nL~~L~Ls~N~-LtsL 235 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---EQITTLILDNNE----LKSLPENL----------------QGNIKTLYANSNQ-LTSI 235 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---cCCcEEEecCCC----CCcCChhh----------------ccCCCEEECCCCc-cccC
Confidence 4455565555555554432 456666666552 22344321 1245555555543 5555
Q ss_pred CccccCCccCceeccCCCCccccccccC
Q 039822 408 PPGIGKLRKLMYLDNRWTHSLRFLSVGI 435 (711)
Q Consensus 408 P~~i~~L~~L~~L~l~~~~~l~~lp~~i 435 (711)
|..+. .+|+.|++++| .+..+|..+
T Consensus 236 P~~l~--~~L~~L~Ls~N-~L~~LP~~l 260 (754)
T PRK15370 236 PATLP--DTIQEMELSIN-RITELPERL 260 (754)
T ss_pred Chhhh--ccccEEECcCC-ccCcCChhH
Confidence 54332 24555555555 344555433
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=8.5e-13 Score=113.75 Aligned_cols=140 Identities=26% Similarity=0.251 Sum_probs=117.0
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRL 396 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L 396 (711)
..+.++.++++++..+|..+. ++.+|++|.+++| .+..+|.++++++.||.|++ ..+|.++.|+.|
T Consensus 33 s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nn----qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNN----QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccc----hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 478999999999999998887 9999999999976 56789999999999999998 678899999999
Q ss_pred ecCCCC-CCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecC
Q 039822 397 DVTYCK-NLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYG 475 (711)
Q Consensus 397 ~l~~~~-~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 475 (711)
||..|. +-..+|..+..|+.|+-|++++| ..+.+|+++++|++||.|.+....-. ..+.+++.+..|+.|+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll----~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh----hCcHHHHHHHHHHHHhccc
Confidence 999865 22368988999999999999998 78889999999999998876554333 2667777777787777765
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-11 Score=118.12 Aligned_cols=233 Identities=18% Similarity=0.141 Sum_probs=132.1
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~~L~~L~ 394 (711)
.....+.+..+.+..+|...|+.+++||.|+|++|.++. --|+.|.++..|-.|-+ ..+++|..|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~---I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF---IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhh---cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 467888899999999999999999999999999985432 23777777777766665 3466677777
Q ss_pred EEecCCCCCCccCC-ccccCCccCceeccCCCCccccccc-cCCCccccCccCeeEec---ccC------CCCcCcchhh
Q 039822 395 RLDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLG---GGN------DRACGLESLK 463 (711)
Q Consensus 395 ~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~---~~~------~~~~~~~~L~ 463 (711)
.|.+..|+ +.-++ ..+..|++|..|.+.+| .+..++. .+..+..++.+.+-... .++ +....+.+.+
T Consensus 144 rLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 144 RLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 77777665 55444 34567777777777776 5666665 35555555555432211 010 0000000000
Q ss_pred cCcc----------------------CCC----eeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcc-cccC
Q 039822 464 KLNL----------------------LRA----CSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEE-QAGR 516 (711)
Q Consensus 464 ~l~~----------------------L~~----L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~ 516 (711)
.... ++. +.-.+ ..........|.++++|+.|+++.|.+..-... +.+.
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d----~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED----FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc----CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 0000 000 00000 001122334577888888888888765433211 1111
Q ss_pred CC-----CchhhHHHH-hhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEe
Q 039822 517 RE-----NEEDEDERL-LDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLK 569 (711)
Q Consensus 517 ~~-----~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 569 (711)
.. ...+..+.+ -..+..+.+|+.|+|.+|.+.. +.|..|..+.+|..|.+-
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~--~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT--VAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE--Eecccccccceeeeeehc
Confidence 00 001111111 2245566777788888877776 546677777777777775
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=6.1e-09 Score=123.85 Aligned_cols=264 Identities=17% Similarity=0.183 Sum_probs=159.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCC----h---------hhHHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS-DPFDEFRIARSIIEALTGSAPD----V---------AEFQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~----~---------~~~~~~~~~~~~~ 66 (711)
|.||||++.++.+ + ++.++|+++. ...++..+...++..+....+. . .........+...
T Consensus 42 G~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (903)
T PRK04841 42 GYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIE 115 (903)
T ss_pred CCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHH
Confidence 8999999999885 2 2268999986 4456777777777777421111 0 1112222233333
Q ss_pred cC--CceEEEEEeCCCCCCccCchhhHhh-hccCCCCCEEEEEecchhhh---hhhCCcCeEECC----CCChhhHHHHH
Q 039822 67 VE--GEKFLLVLDDVWNEDYCKWEPFYYC-LKNCLYGSKILITTRKETVA---CIMGSTDVISVN----VLSEMECWSVF 136 (711)
Q Consensus 67 l~--~~r~LlvlDdv~~~~~~~~~~~~~~-l~~~~~~s~iivTtR~~~~~---~~~~~~~~~~l~----~L~~~ea~~Lf 136 (711)
+. +.+++|||||+-..+......+... ++....+.++|||||..... .........++. +|+.+|+.++|
T Consensus 116 l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll 195 (903)
T PRK04841 116 LADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFF 195 (903)
T ss_pred HhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHH
Confidence 32 6789999999954433333333333 33445567899999984221 111113355666 99999999999
Q ss_pred HHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCC-HHHHHHHHHhhhhhhhh-hcccchhhHH-hhhh
Q 039822 137 ESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNT-EKEWKNILESEIWELEE-VEKGLLAPLM-LSYY 213 (711)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~ 213 (711)
....... .. ...+.+|.+.++|.|+++..++..++.... .... . ..+.. ....+...+. ..++
T Consensus 196 ~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~ 261 (903)
T PRK04841 196 DQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLD 261 (903)
T ss_pred HhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHh
Confidence 7654221 11 233678999999999999999988754431 1100 0 11111 1123444443 3478
Q ss_pred cCChhhhhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEech
Q 039822 214 ELPSKVKQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHD 293 (711)
Q Consensus 214 ~L~~~~~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~ 293 (711)
.|++..+..+...++++ . ++........ | .+.....+.+|.+.+++...... .+. .|+.|+
T Consensus 262 ~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~----------~~~~~~~L~~l~~~~l~~~~~~~-~~~--~yr~H~ 322 (903)
T PRK04841 262 NVDLETRHFLLRCSVLR-S--MNDALIVRVT---G----------EENGQMRLEELERQGLFIQRMDD-SGE--WFRYHP 322 (903)
T ss_pred cCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C----------CCcHHHHHHHHHHCCCeeEeecC-CCC--EEehhH
Confidence 99999999999999985 2 3333222111 1 11245678899999996422111 222 467899
Q ss_pred HHHHHHHHhh
Q 039822 294 LVHDFARYIS 303 (711)
Q Consensus 294 li~~~~~~~~ 303 (711)
++++++....
T Consensus 323 L~r~~l~~~l 332 (903)
T PRK04841 323 LFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=3.7e-10 Score=126.30 Aligned_cols=92 Identities=18% Similarity=0.288 Sum_probs=61.3
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..++.|.+.++.+..+|...+ ++|++|++.+|. +..+|..+. .+|+.|+|++|. +.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~----LtsLP~~l~----------------~~L~~L~Ls~N~-L~ 254 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ----LTSIPATLP----------------DTIQEMELSINR-IT 254 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc----cccCChhhh----------------ccccEEECcCCc-cC
Confidence 478999999999999987764 589999999874 334564321 246667777665 66
Q ss_pred cCCccccCCccCceeccCCCCccccccccCCCccccCccCe
Q 039822 406 ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSR 446 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~ 446 (711)
.+|..+. .+|+.|++++| .+..+|..+. ++|+.|++
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSV 290 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEEC
Confidence 6666553 46777777665 5666665543 34555544
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.05 E-value=1.5e-11 Score=121.18 Aligned_cols=263 Identities=18% Similarity=0.216 Sum_probs=154.7
Q ss_pred cccCCcEEecCCCCCCccC--CccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCc
Q 039822 389 ELYNLQRLDVTYCKNLEEL--PPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLN 466 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~ 466 (711)
++++|++|++..|.+++.. -.-...+++|.+|++++|+.+.. .++ + ...+.+.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--~gv------~-----------------~~~rG~~ 242 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--NGV------Q-----------------ALQRGCK 242 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--Ccc------h-----------------HHhccch
Confidence 3567777777777766643 22345788888888888865543 111 0 0111122
Q ss_pred cCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccC
Q 039822 467 LLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYR 546 (711)
Q Consensus 467 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 546 (711)
.++++...+|..... +.+...-..+..+..+++..|. ...+..+...-..+..|+.|..+++.
T Consensus 243 ~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~---------------~lTD~~~~~i~~~c~~lq~l~~s~~t 305 (483)
T KOG4341|consen 243 ELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCN---------------QLTDEDLWLIACGCHALQVLCYSSCT 305 (483)
T ss_pred hhhhhhhcccccccH--HHHHHHhccChHhhccchhhhc---------------cccchHHHHHhhhhhHhhhhcccCCC
Confidence 233332233322111 1222222233334444443331 11223344555567788888888887
Q ss_pred CCCCCcCcchhhcCcCccEEeEeCCCCCCCCC--C-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccc
Q 039822 547 GRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP--P-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLK 623 (711)
Q Consensus 547 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~ 623 (711)
...+...........+|+.|.+++|+..+..- . -.+.+.|+.|++.+|....+- ++.... .++|.|+
T Consensus 306 ~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--------~~C~~lr 375 (483)
T KOG4341|consen 306 DITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--------RNCPRLR 375 (483)
T ss_pred CCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--------cCCchhc
Confidence 75543211223477899999999998655432 2 335678999999887644332 222222 3789999
Q ss_pred eeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCC-cCCCCCCCccEEEEecCcchhhhhhcccCCCCCcC
Q 039822 624 HLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALP-DHLLQKTTLQRLDIHGCPIFEQRCRKETGANWPML 702 (711)
Q Consensus 624 ~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~ 702 (711)
.|.+++|..+++-..-. .......+..|..|++.+||.+++-- .....+++|+.+++.+|..+++.-.+ +..
T Consensus 376 ~lslshce~itD~gi~~-l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~ 448 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRH-LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFA 448 (483)
T ss_pred cCChhhhhhhhhhhhhh-hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHH
Confidence 99999998887652110 01112367789999999999876532 23445889999999999998875322 346
Q ss_pred CCCCCccc
Q 039822 703 RHTPDIFI 710 (711)
Q Consensus 703 ~~~~~~~~ 710 (711)
.|+|+|+|
T Consensus 449 ~~lp~i~v 456 (483)
T KOG4341|consen 449 THLPNIKV 456 (483)
T ss_pred hhCcccee
Confidence 78888876
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=3e-11 Score=125.05 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=22.8
Q ss_pred ccccCCcEEecCCCCCC-----ccCCccccCCccCceeccCCC
Q 039822 388 CELYNLQRLDVTYCKNL-----EELPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 388 ~~L~~L~~L~l~~~~~l-----~~lP~~i~~L~~L~~L~l~~~ 425 (711)
..+.+|+.|++++|. + ..+++.+...++|++|+++++
T Consensus 20 ~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 20 PKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred HHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc
Confidence 344556777777665 4 345555666667777777665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=2.2e-11 Score=119.03 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccC-CccccCCc
Q 039822 337 SGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEEL-PPGIGKLR 415 (711)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~ 415 (711)
....+|...- +.-..+.|..| .++.+|+ ..++.+++|+.|||++|. |+.+ |..+..|+
T Consensus 57 GL~eVP~~LP---~~tveirLdqN----~I~~iP~-------------~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 57 GLTEVPANLP---PETVEIRLDQN----QISSIPP-------------GAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLA 115 (498)
T ss_pred CcccCcccCC---CcceEEEeccC----CcccCCh-------------hhccchhhhceecccccc-hhhcChHhhhhhH
Confidence 3444565554 34466778876 4556665 356677888888888865 6654 77788888
Q ss_pred cCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCC
Q 039822 416 KLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKK 494 (711)
Q Consensus 416 ~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 494 (711)
+|-.|-+.++++++.+|.+ +++|..||-|.+--+... -...+.+..+++|..|++++. .........+..+.
T Consensus 116 ~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn----~~q~i~~~tf~~l~ 188 (498)
T KOG4237|consen 116 SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDN----KIQSICKGTFQGLA 188 (498)
T ss_pred hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccch----hhhhhccccccchh
Confidence 8888888776688888876 678888887754322222 223455666777766776652 22222333556666
Q ss_pred CCceEEEEee
Q 039822 495 YLFYLRLRFD 504 (711)
Q Consensus 495 ~L~~L~l~~~ 504 (711)
.++.+.+.-+
T Consensus 189 ~i~tlhlA~n 198 (498)
T KOG4237|consen 189 AIKTLHLAQN 198 (498)
T ss_pred ccchHhhhcC
Confidence 6666666544
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=7.8e-11 Score=121.96 Aligned_cols=270 Identities=19% Similarity=0.132 Sum_probs=163.4
Q ss_pred EEecCCCCCC--ccCCccccCCccCceeccCCCCc----cccccccCCCccccCccCeeEecccC---CCCcCcchhhcC
Q 039822 395 RLDVTYCKNL--EELPPGIGKLRKLMYLDNRWTHS----LRFLSVGIGELIRLRGVSRFVLGGGN---DRACGLESLKKL 465 (711)
Q Consensus 395 ~L~l~~~~~l--~~lP~~i~~L~~L~~L~l~~~~~----l~~lp~~i~~l~~L~~L~~~~~~~~~---~~~~~~~~L~~l 465 (711)
.|+|.++. + ...+..+..+.+|+.|++++|.. ...++..+...+.|+.|++....... ........+..+
T Consensus 2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCc-ccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 35565544 3 34455567788899999999942 13455566667777777664432220 001123456678
Q ss_pred ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCC-CCccEEEEec
Q 039822 466 NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPP-PNLKNLAIRK 544 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~ 544 (711)
++|+.|++.++................ ++|+.|+++.|.+... ....+...+..+ ++|+.|++++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~-------------~~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDR-------------GLRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchH-------------HHHHHHHHHHhCCCCceEEEcCC
Confidence 899999998754322222222233333 6699999998854321 223344555566 8999999999
Q ss_pred cCCCCCCc--CcchhhcCcCccEEeEeCCCCCCC--CC----CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcc
Q 039822 545 YRGRRNVV--PRNWVMSLTNLRALVLKNCRNCEH--LP----PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSV 616 (711)
Q Consensus 545 ~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~--l~----~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 616 (711)
|....... ....+..+.+|+.|++++|. +.. ++ .+..+++|++|++++|. +.......... .+
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-------~~ 217 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE-------TL 217 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH-------Hh
Confidence 98774211 02344567789999999984 331 11 14456799999999986 44332211111 13
Q ss_pred cCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCc-----CCCcCCCCCCCccEEEEecCcchhhh
Q 039822 617 IAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLK-----ALPDHLLQKTTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 617 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~~~~L~~l~l~~c~~l~~~ 690 (711)
..+++|++|++++|+ +.+.........-....+.|+.|++.+| .++ .+...+..+++|+.+++++|.--.+.
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 467899999999964 5432211000000112489999999997 453 23334445689999999998765443
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=2.2e-10 Score=113.08 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=130.2
Q ss_pred cCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEe
Q 039822 464 KLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIR 543 (711)
Q Consensus 464 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 543 (711)
.+++|..++++++..+.. ........+++.++.+.+.+| .....+.+...-..+..+..+++.
T Consensus 214 gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC---------------~e~~le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGC---------------LELELEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred hhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhccc---------------ccccHHHHHHHhccChHhhccchh
Confidence 355566666666654443 333344555555665555544 111233333444455667778887
Q ss_pred ccCCCCCCcCcchh--hcCcCccEEeEeCCCCCCCCCC---CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccC
Q 039822 544 KYRGRRNVVPRNWV--MSLTNLRALVLKNCRNCEHLPP---LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIA 618 (711)
Q Consensus 544 ~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~---~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 618 (711)
.|....+. ..|. ..+..|+.|+.++|..++..+. ..+.++|+.|.+.+|..+++.+....+. +
T Consensus 277 ~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----------n 344 (483)
T KOG4341|consen 277 HCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----------N 344 (483)
T ss_pred hhccccch--HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----------C
Confidence 88766642 2232 2577899999999987665443 3457899999999999988887766543 6
Q ss_pred CCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC-----CcCCCCCCCccEEEEecCcchhhhh
Q 039822 619 FPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL-----PDHLLQKTTLQRLDIHGCPIFEQRC 691 (711)
Q Consensus 619 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~~~~L~~l~l~~c~~l~~~~ 691 (711)
.+.|+.|++..|-...+-... .--.++|.|+.|.++.|..+++. .........|+.+.+++||.+++.-
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~----sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLA----SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ChhhhhhcccccceehhhhHh----hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 799999999988655543211 11348999999999999888765 2233447789999999999999864
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=3.2e-07 Score=92.16 Aligned_cols=172 Identities=17% Similarity=0.126 Sum_probs=103.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----HH-cCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQ----EF-VEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----~~-l~~~r~Llv 75 (711)
|+||||+++.+++.... ..+ .++|+ .....+..+++..|+..++..... .+.......+. .. ..+++.++|
T Consensus 53 G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vli 128 (269)
T TIGR03015 53 GAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAAGKRALLV 128 (269)
T ss_pred CCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 89999999999984221 111 12233 334457778889999888654332 22222222332 22 267889999
Q ss_pred EeCCCCCCccCchhhHhhhcc---CCCCCEEEEEecchhhhhhhC----------CcCeEECCCCChhhHHHHHHHHhcC
Q 039822 76 LDDVWNEDYCKWEPFYYCLKN---CLYGSKILITTRKETVACIMG----------STDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 76 lDdv~~~~~~~~~~~~~~l~~---~~~~s~iivTtR~~~~~~~~~----------~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
+|+++......++.+...... ......|++|.... ...... ....+.+++++.+|..+++...+..
T Consensus 129 iDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 129 VDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred EECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHH
Confidence 999987655555554432221 11223456665433 211111 1346789999999999999877543
Q ss_pred CCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 143 GNSMEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
.+......--.+....|++.++|.|..|+.++..+
T Consensus 208 ~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 208 AGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred cCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 32111011123568889999999999999998765
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.66 E-value=6.8e-06 Score=87.56 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=152.1
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHHHcC--CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPFDEFRIARSIIEALTGS-AP-DVAEFQSLMQHIQEFVE--GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~~~~~l~--~~r~Ll 74 (711)
|+|||++++.++++ ..... -.+++++.....+...++..|+.++... .+ .....++....+.+.++ +++.+|
T Consensus 65 GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 65 GTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 89999999999984 43332 2456666667778889999999999752 21 22344566666666664 456899
Q ss_pred EEeCCCCCC----ccCchhhHhhhccCCCCCE--EEEEecchhhhhhhCC-------cCeEECCCCChhhHHHHHHHHhc
Q 039822 75 VLDDVWNED----YCKWEPFYYCLKNCLYGSK--ILITTRKETVACIMGS-------TDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 75 vlDdv~~~~----~~~~~~~~~~l~~~~~~s~--iivTtR~~~~~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
|||+++.-. .+.+..+...+. ...+++ +|.++...++...... ...+.+++++.++..+++...+.
T Consensus 143 viDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 143 ALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 999996532 112222222122 222333 6666665544332211 24678999999999999987753
Q ss_pred CC--CCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhc----C-CC--CHHHHHHHHHhhhhhhhhhcccchhhHHhhh
Q 039822 142 FG--NSMEERENLEKIGREIIRKCKGLPLAAKTIASLLR----S-KN--TEKEWKNILESEIWELEEVEKGLLAPLMLSY 212 (711)
Q Consensus 142 ~~--~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~----~-~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy 212 (711)
.. .....+..+..++.......|..+.|+.++-.+.. . .. +.+....++... ......-.+
T Consensus 222 ~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~ 291 (394)
T PRK00411 222 EGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIVHLSEVL 291 (394)
T ss_pred hhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHH
Confidence 21 11122233333334333335667778777654321 1 11 233343333321 012234457
Q ss_pred hcCChhhhhHhhhhcCCCC--CcccCHHHHHH--HHHHcCCcccCCCchHHHHHHHHHHHHHhccccccccc--CCCccE
Q 039822 213 YELPSKVKQCFAYCAVFPK--DHEILKYDLIE--LWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAK--SGDGEI 286 (711)
Q Consensus 213 ~~L~~~~~~~~~~~~~f~~--~~~i~~~~l~~--~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~--~~~~~~ 286 (711)
..|+.+.|..+..++...+ ...+....+.. ..+++.+-. ... .......++..|.+.++|+.... +..|+.
T Consensus 292 ~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~--~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~ 368 (394)
T PRK00411 292 RTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY--EPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRT 368 (394)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--CcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCe
Confidence 7888887766655543321 12234444432 223322211 111 12334568999999999986533 334555
Q ss_pred EEEEech
Q 039822 287 VCCKMHD 293 (711)
Q Consensus 287 ~~~~mh~ 293 (711)
+.++++.
T Consensus 369 ~~~~~~~ 375 (394)
T PRK00411 369 RLISLSY 375 (394)
T ss_pred EEEEecC
Confidence 5555543
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.65 E-value=1.7e-06 Score=93.98 Aligned_cols=269 Identities=17% Similarity=0.225 Sum_probs=165.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCh-------------hhHHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-PFDEFRIARSIIEALTGSAPDV-------------AEFQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-------------~~~~~~~~~~~~~ 66 (711)
|.|||||+.+++. ....=..+.|++.++ ..++..+.+.++..+..-.++. .........+...
T Consensus 47 GfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~E 123 (894)
T COG2909 47 GFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNE 123 (894)
T ss_pred CCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHH
Confidence 8999999999985 233335799999664 5568889998888886433322 2222334444444
Q ss_pred cC--CceEEEEEeCCCCCCccCchhhHhh-hccCCCCCEEEEEecchhhhhhh--C-CcCeEECC----CCChhhHHHHH
Q 039822 67 VE--GEKFLLVLDDVWNEDYCKWEPFYYC-LKNCLYGSKILITTRKETVACIM--G-STDVISVN----VLSEMECWSVF 136 (711)
Q Consensus 67 l~--~~r~LlvlDdv~~~~~~~~~~~~~~-l~~~~~~s~iivTtR~~~~~~~~--~-~~~~~~l~----~L~~~ea~~Lf 136 (711)
+. .++.++||||.=-........-... +....++-..|||||..--...- . .....++. .++.+|+.++|
T Consensus 124 la~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl 203 (894)
T COG2909 124 LASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFL 203 (894)
T ss_pred HHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHH
Confidence 43 4579999999622222233332333 33445688999999987322211 1 12233332 57899999999
Q ss_pred HHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhhhhcccchh-hHHhhhhcC
Q 039822 137 ESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELEEVEKGLLA-PLMLSYYEL 215 (711)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L 215 (711)
.......-+ ..-++.+.+..+|-+-|+..++-..+.+.+.+.--..+ ...++-+.+ ...--++.|
T Consensus 204 ~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L-------sG~~~~l~dYL~eeVld~L 269 (894)
T COG2909 204 NDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL-------SGAASHLSDYLVEEVLDRL 269 (894)
T ss_pred HHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-------cchHHHHHHHHHHHHHhcC
Confidence 776522211 23367899999999999999999998544433221111 111122222 222356889
Q ss_pred ChhhhhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHH
Q 039822 216 PSKVKQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLV 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li 295 (711)
|++.|..+.-+++++.- -.+|.....+ ++.+..++++|.+++|+-.--.+ .++ .|+.|.++
T Consensus 270 p~~l~~FLl~~svl~~f----~~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd-~~~--WfryH~LF 330 (894)
T COG2909 270 PPELRDFLLQTSVLSRF----NDELCNALTG------------EENGQAMLEELERRGLFLQRLDD-EGQ--WFRYHHLF 330 (894)
T ss_pred CHHHHHHHHHHHhHHHh----hHHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecC-CCc--eeehhHHH
Confidence 99999999999997432 2233332211 23466779999999987532222 222 58999999
Q ss_pred HHHHHHhhcc
Q 039822 296 HDFARYISSN 305 (711)
Q Consensus 296 ~~~~~~~~~~ 305 (711)
.+|.+.....
T Consensus 331 aeFL~~r~~~ 340 (894)
T COG2909 331 AEFLRQRLQR 340 (894)
T ss_pred HHHHHhhhcc
Confidence 9998766443
No 32
>PF05729 NACHT: NACHT domain
Probab=98.60 E-value=4.3e-07 Score=83.82 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=80.3
Q ss_pred CccHHHHHHHHhcChhhhcc----CCceEEEEeCCCCCHH---HHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNH----FEKRIWVCVSDPFDEF---RIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~L 73 (711)
|+||||++++++.+-..... +..++|+......... .+...|..+..... ....... .....+.++++
T Consensus 10 G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~l 84 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELL--QELLEKNKRVL 84 (166)
T ss_pred CCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHH--HHHHHcCCceE
Confidence 89999999999984222222 3456677655444332 34444444443222 1111111 11122578999
Q ss_pred EEEeCCCCCCccC-------chhhHh-hhcc-CCCCCEEEEEecchhh---hhhhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 74 LVLDDVWNEDYCK-------WEPFYY-CLKN-CLYGSKILITTRKETV---ACIMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 74 lvlDdv~~~~~~~-------~~~~~~-~l~~-~~~~s~iivTtR~~~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
+|+|++++-.... +..+.. .++. ..++.++|||+|.... .........+++.+|+.++..+++.++.
T Consensus 85 lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 85 LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 9999995543211 122222 2332 3568999999998765 2333445689999999999999997764
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.2e-08 Score=97.17 Aligned_cols=236 Identities=18% Similarity=0.128 Sum_probs=132.3
Q ss_pred cccCCcEEecCCCCCCccCCc--cccCCccCceeccCCCCcccc---ccccCCCccccCccCeeEecccCCCCcCcchhh
Q 039822 389 ELYNLQRLDVTYCKNLEELPP--GIGKLRKLMYLDNRWTHSLRF---LSVGIGELIRLRGVSRFVLGGGNDRACGLESLK 463 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~---lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~ 463 (711)
++.+|+...|.+|. +...+. ....|++++.||++.| -+.. +-.-+..|++|+.|++..+.-.........
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--- 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--- 193 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccch---
Confidence 46777788888765 666653 5677888888888876 2221 112234455555555433322110000000
Q ss_pred cCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEe
Q 039822 464 KLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIR 543 (711)
Q Consensus 464 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 543 (711)
..++.|+.|.++.|+++ -..+...+..+|+|+.|.+.
T Consensus 194 ---------------------------~~l~~lK~L~l~~CGls----------------~k~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 194 ---------------------------LLLSHLKQLVLNSCGLS----------------WKDVQWILLTFPSLEVLYLE 230 (505)
T ss_pred ---------------------------hhhhhhheEEeccCCCC----------------HHHHHHHHHhCCcHHHhhhh
Confidence 03345555666555432 22244455567888888888
Q ss_pred ccCCCCCCcCcchhhcCcCccEEeEeCCCCCC--CCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCc
Q 039822 544 KYRGRRNVVPRNWVMSLTNLRALVLKNCRNCE--HLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPK 621 (711)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 621 (711)
+|.... .......-++.|+.|+|+++..+. ..+..+.+|.|..|+++.|. +..+.. ....++ .-...||+
T Consensus 231 ~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~--~d~~s~---~kt~~f~k 302 (505)
T KOG3207|consen 231 ANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE--PDVESL---DKTHTFPK 302 (505)
T ss_pred cccccc--eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC--CCccch---hhhccccc
Confidence 875322 102223357788888998885332 34558888888888888765 443321 111000 01246999
Q ss_pred cceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-----CCCCCCCccEEEEecCcc
Q 039822 622 LKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-----HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 622 L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-----~~~~~~~L~~l~l~~c~~ 686 (711)
|++|++.. +++.+|..- +.+..+++|+.|.+.. +.+..=.. .++..+.|..|+=.+|..
T Consensus 303 L~~L~i~~-N~I~~w~sl----~~l~~l~nlk~l~~~~-n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 303 LEYLNISE-NNIRDWRSL----NHLRTLENLKHLRITL-NYLNKETDTAKLLVIARISQLVKLNDVDISP 366 (505)
T ss_pred ceeeeccc-Ccccccccc----chhhccchhhhhhccc-ccccccccceeEEeeeehhhhhhhcccccCh
Confidence 99999988 567667643 3466778888888654 44432111 234455666665555533
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=8.6e-08 Score=87.19 Aligned_cols=136 Identities=19% Similarity=0.282 Sum_probs=54.1
Q ss_pred cCCCCCccEEEEeccCCCCCCcCcchhh-cCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCC
Q 039822 531 LGPPPNLKNLAIRKYRGRRNVVPRNWVM-SLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVES 609 (711)
Q Consensus 531 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 609 (711)
+..+.+++.|+|+++.+.. .+.+. .+.+|+.|++++| .++.++.+..++.|++|+++++. ++.++..+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~---- 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST----IENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD---- 84 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH----
T ss_pred ccccccccccccccccccc----ccchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH----
Confidence 3345678999999999877 34555 6889999999999 78888888899999999999887 777754321
Q ss_pred CCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc----CCCCCCCccEEEEecCc
Q 039822 610 DTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD----HLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 610 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~l~~c~ 685 (711)
..+|+|++|.+++ +++.++..- ..+..+|+|+.|++.++| +..-+. .+..+|+|+.||-....
T Consensus 85 -------~~lp~L~~L~L~~-N~I~~l~~l----~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 85 -------KNLPNLQELYLSN-NKISDLNEL----EPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -------HH-TT--EEE-TT-S---SCCCC----GGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred -------HhCCcCCEEECcC-CcCCChHHh----HHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 2589999999987 566655321 225689999999999976 444444 24458899999876665
Q ss_pred chhh
Q 039822 686 IFEQ 689 (711)
Q Consensus 686 ~l~~ 689 (711)
.=++
T Consensus 152 ~~ER 155 (175)
T PF14580_consen 152 EEER 155 (175)
T ss_dssp S-B-
T ss_pred HHHh
Confidence 5443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-08 Score=96.29 Aligned_cols=184 Identities=19% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCcEEecCCCCCCc--cCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 392 NLQRLDVTYCKNLE--ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 392 ~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
.||+|||++.. ++ ++-.-++.|.+|+.|.+.++. +. ......+.+=.+|+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~-Ld--------------------------D~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLR-LD--------------------------DPIVNTIAKNSNLV 237 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccc-cC--------------------------cHHHHHHhccccce
Confidence 36677777533 43 233334566666666666552 11 11223334444555
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
.|+++.++++.. .+....+..++.|..|+++||++.... .......+ -++|+.|+|+|+.-.-
T Consensus 238 ~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~~~-------------Vtv~V~hi--se~l~~LNlsG~rrnl 300 (419)
T KOG2120|consen 238 RLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFTEK-------------VTVAVAHI--SETLTQLNLSGYRRNL 300 (419)
T ss_pred eeccccccccch--hHHHHHHHhhhhHhhcCchHhhccchh-------------hhHHHhhh--chhhhhhhhhhhHhhh
Confidence 566665554432 334455678888999999999543321 11122222 3688999999875432
Q ss_pred CCcC-cchhhcCcCccEEeEeCCCCCCC--CCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceee
Q 039822 550 NVVP-RNWVMSLTNLRALVLKNCRNCEH--LPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLK 626 (711)
Q Consensus 550 ~~~~-~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 626 (711)
-..- ......+++|.+|+|++|..++. +..+..++.|++|.++.|+.+ +|..+.. +...|+|.+|+
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLd 369 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLD 369 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEE
Confidence 1000 11234799999999999987765 223778899999999999854 2333333 34678888888
Q ss_pred cccCc
Q 039822 627 FYDME 631 (711)
Q Consensus 627 l~~~~ 631 (711)
+.+|-
T Consensus 370 v~g~v 374 (419)
T KOG2120|consen 370 VFGCV 374 (419)
T ss_pred ecccc
Confidence 88864
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=2.2e-08 Score=102.97 Aligned_cols=166 Identities=24% Similarity=0.219 Sum_probs=134.0
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEEe
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLD 397 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~ 397 (711)
.....+++.+....+|..+. .|..|..|.+.+| .+..+|.++.++..|.+|+| ..+|.|+ |+.|-
T Consensus 76 dt~~aDlsrNR~~elp~~~~-~f~~Le~liLy~n----~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEAC-AFVSLESLILYHN----CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccccCchHHH-HHHHHHHHHHHhc----cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 44567777788888898877 8889999999987 45568999999999999999 3455554 99999
Q ss_pred cCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcC
Q 039822 398 VTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLG 477 (711)
Q Consensus 398 l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 477 (711)
+++|+ ++.+|.+++-++.|.+||.+.| .+..+|..+++|.+|+.|++...... ..+.++..|+ |..|++++.
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~----~lp~El~~Lp-Li~lDfScN- 221 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE----DLPEELCSLP-LIRLDFSCN- 221 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh----hCCHHHhCCc-eeeeecccC-
Confidence 99876 9999999999999999999999 89999999999999999986544333 3677777666 667887752
Q ss_pred CCCChhhhhHhhhcCCCCCceEEEEeecCCCCC
Q 039822 478 GVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGD 510 (711)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 510 (711)
++ ..++..|.+|+.|+.|.|..|-+...+
T Consensus 222 ki----s~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 222 KI----SYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ce----eecchhhhhhhhheeeeeccCCCCCCh
Confidence 22 446678999999999999998665544
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.35 E-value=0.00022 Score=75.09 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=141.8
Q ss_pred CccHHHHHHHHhcChhhhccCC------ceEEEEeCCCCCHHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHHHcC--
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE------KRIWVCVSDPFDEFRIARSIIEALT---GSAP-DVAEFQSLMQHIQEFVE-- 68 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~-~~~~~~~~~~~~~~~l~-- 68 (711)
|+|||++++.++++ ...... .++|+......+...++..|+.++. ...+ .....++....+.+.+.
T Consensus 50 GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 50 GTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999983 322211 3567777777788899999999984 2221 12233444555555553
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhc-c----CC--CCCEEEEEecchhhhhhhC-----C--cCeEECCCCChhhHHH
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLK-N----CL--YGSKILITTRKETVACIMG-----S--TDVISVNVLSEMECWS 134 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~-~----~~--~~s~iivTtR~~~~~~~~~-----~--~~~~~l~~L~~~ea~~ 134 (711)
+++++||||+++.-. .....+...+. . .. ....+|.+|...+....+. . ...+.+++++.++..+
T Consensus 128 ~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~ 206 (365)
T TIGR02928 128 GDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRD 206 (365)
T ss_pred CCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHH
Confidence 568899999995542 11112221111 1 11 2334555555443322111 1 2468899999999999
Q ss_pred HHHHHhcC-CCCcchhhhHHHHHHHHHHhcCCChH-HHHHHHHHh----cC-C--CCHHHHHHHHHhhhhhhhhhcccch
Q 039822 135 VFESLAFF-GNSMEERENLEKIGREIIRKCKGLPL-AAKTIASLL----RS-K--NTEKEWKNILESEIWELEEVEKGLL 205 (711)
Q Consensus 135 Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a~~l----~~-~--~~~~~w~~~l~~~~~~~~~~~~~i~ 205 (711)
++..++.. .......++..+++.+++....|.|- |+.++-.+. .. . -+.+..+.+.... -.
T Consensus 207 il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~----------~~ 276 (365)
T TIGR02928 207 ILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI----------EK 276 (365)
T ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------HH
Confidence 99887631 11112234445566677888888884 333332211 11 1 1222222222221 01
Q ss_pred hhHHhhhhcCChhhhhHhhhhcCCC--CCcccCHHHHHHHH--HHcCCcccCCCchHHHHHHHHHHHHHhcccccccc
Q 039822 206 APLMLSYYELPSKVKQCFAYCAVFP--KDHEILKYDLIELW--MAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFA 279 (711)
Q Consensus 206 ~~l~~sy~~L~~~~~~~~~~~~~f~--~~~~i~~~~l~~~w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~ 279 (711)
....-.+..|+.+.+..+..++..- ++..+....+...+ +.+.+. .. ...+.....++..|...|+|....
T Consensus 277 ~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~~-~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 277 DRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG--VD-PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC--CC-CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2233456678777776555444221 23334455444422 222211 11 122355667889999999998653
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=2.1e-07 Score=84.68 Aligned_cols=107 Identities=24% Similarity=0.424 Sum_probs=41.0
Q ss_pred cCcCccEEeEeCCCCCCCCCCCC-CCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCccccccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPPLG-KLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWD 637 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 637 (711)
+..+++.|+|.++ .++.+..++ .+.+|+.|++++|. ++.+.. +..++.|+.|++++ +.++++.
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~-------------l~~L~~L~~L~L~~-N~I~~i~ 80 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQ-ITKLEG-------------LPGLPRLKTLDLSN-NRISSIS 80 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-----------------TT--EEE--S-S---S-C
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCCC-CccccC-------------ccChhhhhhcccCC-CCCCccc
Confidence 4557899999999 677777777 58899999999987 766643 45789999999988 6777664
Q ss_pred ccCcccccc-ccCCcccEEeecCCCCCcCCCc--CCCCCCCccEEEEecCcchh
Q 039822 638 YGTAIKGEI-IIMPRLSFLEIGGCRKLKALPD--HLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 638 ~~~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~--~~~~~~~L~~l~l~~c~~l~ 688 (711)
.+ + ..+|+|+.|.+++ +++.++.. .+..+++|+.|++.++|--+
T Consensus 81 ~~------l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EG------LDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HH------HHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cc------hHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 22 2 3699999999998 68887764 45568999999999999643
No 39
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=2.8e-06 Score=85.37 Aligned_cols=281 Identities=21% Similarity=0.157 Sum_probs=175.5
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
||||||++-.+.. ++..|. ++.++......+...+...++..+.....+. +.....+.+....+|.++|+||.
T Consensus 24 gvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~~rr~llvldnc 97 (414)
T COG3903 24 GVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIGDRRALLVLDNC 97 (414)
T ss_pred ccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHhhhhHHHHhcCc
Confidence 8999999999986 677775 6777777777778877777777776544322 23444556667789999999998
Q ss_pred CCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChh-hHHHHHHHHhcCCCCc-chhhhHHHHHH
Q 039822 80 WNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEM-ECWSVFESLAFFGNSM-EERENLEKIGR 157 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~~~-~~~~~~~~~~~ 157 (711)
.+-. ..-......+-...+.-.|+.|+|+.-.. .++....+++|+.- ++.++|...+...... -....-.....
T Consensus 98 ehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~ 173 (414)
T COG3903 98 EHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVA 173 (414)
T ss_pred HHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHH
Confidence 3321 12222333344444556788888876433 34567788888855 7899987765433222 11123345678
Q ss_pred HHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhh-------hhcccchhhHHhhhhcCChhhhhHhhhhcCCC
Q 039822 158 EIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELE-------EVEKGLLAPLMLSYYELPSKVKQCFAYCAVFP 230 (711)
Q Consensus 158 ~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~~~~~~~~~~~f~ 230 (711)
+|++..+|.|++|..+++..+.-.. ..--..+...-..+. -..+.....+.+||.-|+...+..|..++.|.
T Consensus 174 ~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~ 252 (414)
T COG3903 174 EICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFV 252 (414)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhh
Confidence 8999999999999999988866432 111111111111111 12256778999999999999999999999998
Q ss_pred CCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHHHHHHhh
Q 039822 231 KDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHDFARYIS 303 (711)
Q Consensus 231 ~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~~~~~~~ 303 (711)
..+.... ..|.+-|-.... ........+..+++++++........ ..|+.-+..+.|+..+.
T Consensus 253 g~f~~~l----~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~~~---a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 253 GGFDLGL----ALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLLGR---ARYRLLETGRRYALAEL 314 (414)
T ss_pred hhhcccH----HHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhhhH---HHHHHHHHHHHHHHHHH
Confidence 8877542 334443322211 11222333567788888754332211 12455566666665544
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=4.3e-07 Score=88.35 Aligned_cols=41 Identities=20% Similarity=-0.036 Sum_probs=25.5
Q ss_pred cccccccCCcEEecCCCCCCccCC----ccccCCccCceeccCCC
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELP----PGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP----~~i~~L~~L~~L~l~~~ 425 (711)
+.+-..++|++||||+|---...+ ..+.++..|++|.|.+|
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 344455678888888764222222 23466778888888877
No 41
>PRK06893 DNA replication initiation factor; Validated
Probab=98.24 E-value=1e-05 Score=78.43 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=86.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+|+..+++ ........+.|+++...... ...+.+.++ +.-+||+||+|
T Consensus 49 G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~~~------------------------~~~~~~~~~-~~dlLilDDi~ 101 (229)
T PRK06893 49 SSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQYF------------------------SPAVLENLE-QQDLVCLDDLQ 101 (229)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhhhh------------------------hHHHHhhcc-cCCEEEEeChh
Confidence 8999999999998 45444556778876421000 001111222 23489999997
Q ss_pred CCC-ccCchh-hHhhhccC-CCCCEEEEE-ecc---------hhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 81 NED-YCKWEP-FYYCLKNC-LYGSKILIT-TRK---------ETVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 81 ~~~-~~~~~~-~~~~l~~~-~~~s~iivT-tR~---------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
... ..+|.. +...+... ..+..+||+ ++. .++...+.....+++++++.++.++++.+.++..+-..
T Consensus 102 ~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l 181 (229)
T PRK06893 102 AVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL 181 (229)
T ss_pred hhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 642 234443 22223221 135566554 443 35555556677999999999999999999886544322
Q ss_pred hhhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039822 148 ERENLEKIGREIIRKCKGLPLAAKTIAS 175 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Plai~~~a~ 175 (711)
. .+...-|++.+.|..-++..+-.
T Consensus 182 ~----~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 182 S----DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred C----HHHHHHHHHhccCCHHHHHHHHH
Confidence 1 34456677887776655544433
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=2.5e-07 Score=87.70 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=79.7
Q ss_pred CCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCC
Q 039822 494 KYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRN 573 (711)
Q Consensus 494 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 573 (711)
+.|+.+++++|. ...+-.++.-.|.++.|+++.|.... ...+..+++|+.|+++++ .
T Consensus 284 q~LtelDLS~N~------------------I~~iDESvKL~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~N-~ 340 (490)
T KOG1259|consen 284 QELTELDLSGNL------------------ITQIDESVKLAPKLRRLILSQNRIRT----VQNLAELPQLQLLDLSGN-L 340 (490)
T ss_pred hhhhhccccccc------------------hhhhhhhhhhccceeEEeccccceee----ehhhhhcccceEeecccc-h
Confidence 356667777663 33333455556777777777777665 233667777777777776 3
Q ss_pred CCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcc
Q 039822 574 CEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRL 652 (711)
Q Consensus 574 l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 652 (711)
+..+.. -..+.+.+.|.|+++. ++++.. ++.+-+|.+|++++ ++++++..- ..++++|+|
T Consensus 341 Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG-------------L~KLYSLvnLDl~~-N~Ie~ldeV----~~IG~LPCL 401 (490)
T KOG1259|consen 341 LAECVGWHLKLGNIKTLKLAQNK-IETLSG-------------LRKLYSLVNLDLSS-NQIEELDEV----NHIGNLPCL 401 (490)
T ss_pred hHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-------------hHhhhhheeccccc-cchhhHHHh----cccccccHH
Confidence 333332 3345566777776654 443322 44566777777776 445544321 236788888
Q ss_pred cEEeecCCCCCcCCCc
Q 039822 653 SFLEIGGCRKLKALPD 668 (711)
Q Consensus 653 ~~L~l~~c~~l~~lp~ 668 (711)
++|.+.++| +..+|+
T Consensus 402 E~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 402 ETLRLTGNP-LAGSVD 416 (490)
T ss_pred HHHhhcCCC-ccccch
Confidence 888888854 555554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.4e-08 Score=91.20 Aligned_cols=93 Identities=20% Similarity=0.107 Sum_probs=46.5
Q ss_pred chhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccE
Q 039822 460 ESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKN 539 (711)
Q Consensus 460 ~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 539 (711)
.-|..+++|+.|++.+.. ..+.+...+.+-.+|+.+++++++ +-......-.+..++.|..
T Consensus 204 ~iLs~C~kLk~lSlEg~~----LdD~I~~~iAkN~~L~~lnlsm~s---------------G~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLR----LDDPIVNTIAKNSNLVRLNLSMCS---------------GFTENALQLLLSSCSRLDE 264 (419)
T ss_pred HHHHHHHhhhhccccccc----cCcHHHHHHhccccceeecccccc---------------ccchhHHHHHHHhhhhHhh
Confidence 445566667777766532 234455556666666666666652 1122222333445556666
Q ss_pred EEEeccCCCCCCcCcchhh-cCcCccEEeEeCCC
Q 039822 540 LAIRKYRGRRNVVPRNWVM-SLTNLRALVLKNCR 572 (711)
Q Consensus 540 L~L~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 572 (711)
|+|+.|....+.+ ...+. --++|+.|+++||.
T Consensus 265 LNlsWc~l~~~~V-tv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKV-TVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhh-hHHHhhhchhhhhhhhhhhH
Confidence 6666665554322 11111 23455555555553
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=3.1e-07 Score=87.02 Aligned_cols=230 Identities=18% Similarity=0.131 Sum_probs=142.7
Q ss_pred cCCcccEEEeccCCCCccccccchhhhc-cCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCC
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDK-LTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTH 426 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 426 (711)
-+.+|.+|.+..... |-.-++ .+++--.+ +.-+.+|+.+.++.|. -+.+-.-...=+.|+.+.+.+.
T Consensus 180 f~~~l~~l~vs~~~~-------p~~~sni~~~~l~f~---l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s- 247 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKD-------PIDRSNIIPNRLSFN---LNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT- 247 (490)
T ss_pred hhhheeEEEecCCCC-------CCccccccccccccc---hHHhhhhheeeeeccc-hhheeceeecCchhheeeeecc-
Confidence 467888888876421 100000 11111222 2334566777777765 3333332334466777777664
Q ss_pred ccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecC
Q 039822 427 SLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDL 506 (711)
Q Consensus 427 ~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 506 (711)
.+...|. +--.+.+..+.. -......+.....+...+-|..++++... -..+..++.-.+.++.|+++.|.+
T Consensus 248 ~~~~~~~-l~pe~~~~D~~~--~E~~t~~G~~~~~~dTWq~LtelDLS~N~-----I~~iDESvKL~Pkir~L~lS~N~i 319 (490)
T KOG1259|consen 248 TIQDVPS-LLPETILADPSG--SEPSTSNGSALVSADTWQELTELDLSGNL-----ITQIDESVKLAPKLRRLILSQNRI 319 (490)
T ss_pred ccccccc-ccchhhhcCccC--CCCCccCCceEEecchHhhhhhccccccc-----hhhhhhhhhhccceeEEeccccce
Confidence 2332222 111222222111 11111123344555556667777777522 133445666778999999999854
Q ss_pred CCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCC
Q 039822 507 RDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSL 586 (711)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L 586 (711)
..- ..+..+++|+.|+|++|.... . ..|-..+.|.+.|.++++ .++++..++.+=+|
T Consensus 320 ~~v-------------------~nLa~L~~L~~LDLS~N~Ls~--~-~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSL 376 (490)
T KOG1259|consen 320 RTV-------------------QNLAELPQLQLLDLSGNLLAE--C-VGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSL 376 (490)
T ss_pred eee-------------------hhhhhcccceEeecccchhHh--h-hhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhh
Confidence 332 235567899999999999887 6 788889999999999999 78899999999999
Q ss_pred CeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCc
Q 039822 587 EDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDME 631 (711)
Q Consensus 587 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 631 (711)
..|++.++. ++.+... .+++.+|.|+.|.+.+.|
T Consensus 377 vnLDl~~N~-Ie~ldeV----------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 377 VNLDLSSNQ-IEELDEV----------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeccccccc-hhhHHHh----------cccccccHHHHHhhcCCC
Confidence 999999876 5555432 237789999999998865
No 45
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.10 E-value=8.2e-06 Score=80.02 Aligned_cols=167 Identities=20% Similarity=0.159 Sum_probs=78.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHH---------HHHHhcCC----C------CChhhHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARS---------IIEALTGS----A------PDVAEFQSLMQ 61 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~---------i~~~l~~~----~------~~~~~~~~~~~ 61 (711)
|+|||+|++++.+ .....-..++|+.............. +...+... . ...........
T Consensus 30 g~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (234)
T PF01637_consen 30 GSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALE 107 (234)
T ss_dssp TSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HH
T ss_pred cCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHH
Confidence 8999999999998 34222124555554444332221111 11222111 0 01122233333
Q ss_pred HHHHHcC--CceEEEEEeCCCCCC-c-cCchhhHh----hhcc--CCCCCEEEEEecchhhhhh--------hCCcCeEE
Q 039822 62 HIQEFVE--GEKFLLVLDDVWNED-Y-CKWEPFYY----CLKN--CLYGSKILITTRKETVACI--------MGSTDVIS 123 (711)
Q Consensus 62 ~~~~~l~--~~r~LlvlDdv~~~~-~-~~~~~~~~----~l~~--~~~~s~iivTtR~~~~~~~--------~~~~~~~~ 123 (711)
.+.+.+. +++++||+|++..-. . .....+.. .+.. ......+|++.....+... .+....+.
T Consensus 108 ~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~ 187 (234)
T PF01637_consen 108 RLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIE 187 (234)
T ss_dssp HHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEE
T ss_pred HHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEE
Confidence 4444443 345999999994433 0 01122222 2222 1223344445444433322 12234699
Q ss_pred CCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHH
Q 039822 124 VNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKT 172 (711)
Q Consensus 124 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 172 (711)
+++++.+++++++....-.. . .. +.-....++|.+.+||+|..|..
T Consensus 188 l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 188 LKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999999999998865333 1 11 11234468899999999988864
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.07 E-value=4.2e-05 Score=78.90 Aligned_cols=240 Identities=17% Similarity=0.118 Sum_probs=119.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-ChhhH----HHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-DVAEF----QSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~----~~~~~~~~~~l~~~r~Llv 75 (711)
|+|||++|+.+++ .....+ .++.. ........+..++..+..... -.++. ......+...+.+.+..++
T Consensus 61 G~GKT~la~~ia~--~l~~~~---~~~~~-~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~ 134 (328)
T PRK00080 61 GLGKTTLANIIAN--EMGVNI---RITSG-PALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIM 134 (328)
T ss_pred CccHHHHHHHHHH--HhCCCe---EEEec-ccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeee
Confidence 8999999999998 443322 12221 112222223333333321110 00111 1122223444455566666
Q ss_pred EeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhC--CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHH
Q 039822 76 LDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMG--STDVISVNVLSEMECWSVFESLAFFGNSMEERENLE 153 (711)
Q Consensus 76 lDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 153 (711)
+|+..+... +...++ +.+-|..|+|...+..... ....+++++++.++..+++.+.+...+.... .
T Consensus 135 l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~ 202 (328)
T PRK00080 135 IGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID----E 202 (328)
T ss_pred eccCccccc-----eeecCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----H
Confidence 666532211 111111 2345666666544333221 1357899999999999999988755433221 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhhhhcccchhhHHhhhhcCChhhhhHhh-hhcCCCCC
Q 039822 154 KIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELEEVEKGLLAPLMLSYYELPSKVKQCFA-YCAVFPKD 232 (711)
Q Consensus 154 ~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~-~~~~f~~~ 232 (711)
+.+..|++.|+|.|-.+..+...+. .|.... .........-......+...+..|++..+..+. ....|..+
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR------DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 4578899999999965554444321 111110 000000111122233455667788887777775 55556544
Q ss_pred cccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHH-HHHhcccccc
Q 039822 233 HEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFN-ILASRSFFQD 277 (711)
Q Consensus 233 ~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~-~L~~~sLl~~ 277 (711)
.+..+.+-..+ -.+ .+.++..++ .|++.+||+.
T Consensus 276 -~~~~~~~a~~l-----g~~------~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 276 -PVGLDTLAAAL-----GEE------RDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred -ceeHHHHHHHH-----CCC------cchHHHHhhHHHHHcCCccc
Confidence 34444442222 111 123344455 8999999963
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.05 E-value=4.5e-05 Score=78.07 Aligned_cols=239 Identities=16% Similarity=0.098 Sum_probs=118.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-ChhhH----HHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-DVAEF----QSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~----~~~~~~~~~~l~~~r~Llv 75 (711)
|+|||++|+.+++ +....| ..+......... .....+..+..... -.++. ......+...+.+.+..+|
T Consensus 40 G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~~-~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v 113 (305)
T TIGR00635 40 GLGKTTLAHIIAN--EMGVNL---KITSGPALEKPG-DLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIV 113 (305)
T ss_pred CCCHHHHHHHHHH--HhCCCE---EEeccchhcCch-hHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeee
Confidence 8999999999998 343322 122211111111 22222333321110 00111 1223334555566666777
Q ss_pred EeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhh-C-CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHH
Q 039822 76 LDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIM-G-STDVISVNVLSEMECWSVFESLAFFGNSMEERENLE 153 (711)
Q Consensus 76 lDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 153 (711)
+|+..... .+. ..++ +.+-|..||+...+.... . ....+.+++++.++..+++.+.+...+... + .
T Consensus 114 ~~~~~~~~--~~~---~~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~---~ 181 (305)
T TIGR00635 114 IGKGPSAR--SVR---LDLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI-E---P 181 (305)
T ss_pred eccCcccc--cee---ecCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc-C---H
Confidence 77763322 121 1111 245566677765443321 1 134678999999999999988875433322 1 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhh-hhhhhcccchhhHHhhhhcCChhhhhHhh-hhcCCCC
Q 039822 154 KIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIW-ELEEVEKGLLAPLMLSYYELPSKVKQCFA-YCAVFPK 231 (711)
Q Consensus 154 ~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~-~~~~~~~~i~~~l~~sy~~L~~~~~~~~~-~~~~f~~ 231 (711)
+.+..|++.|+|.|-.+..++..+ |..+...... ...+.-......+...|..++...+..+. ..+.+..
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~ 253 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQG 253 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 346789999999997665555432 1111000000 00000011122245567778887777666 3355543
Q ss_pred CcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHH-HHHhcccccc
Q 039822 232 DHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFN-ILASRSFFQD 277 (711)
Q Consensus 232 ~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~-~L~~~sLl~~ 277 (711)
+ .+....+-... |. + ...+...++ .|++++||..
T Consensus 254 ~-~~~~~~ia~~l---g~--~------~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 254 G-PVGLKTLAAAL---GE--D------ADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred C-cccHHHHHHHh---CC--C------cchHHHhhhHHHHHcCCccc
Confidence 3 33343333221 11 1 123455567 6999999963
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=5.6e-06 Score=72.87 Aligned_cols=105 Identities=21% Similarity=0.167 Sum_probs=72.3
Q ss_pred CccHHHHHHHHhcChhhhcc-----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCc-eEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-----FEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGE-KFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-r~Ll 74 (711)
|+|||+++++++++ .... -..++|+......+...+.+.|+.++..........++..+.+.+.+... ..+|
T Consensus 14 G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~l 91 (131)
T PF13401_consen 14 GSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLL 91 (131)
T ss_dssp TSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEE
T ss_pred CCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 89999999999983 3322 34678999888889999999999999877655445566667777777644 4699
Q ss_pred EEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecc
Q 039822 75 VLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRK 109 (711)
Q Consensus 75 vlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~ 109 (711)
|+|++..- +...++.+.. +.+ ..+.++|+..+.
T Consensus 92 viDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 92 VIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred EEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 99999553 3223333322 222 456778777665
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6.4e-07 Score=89.59 Aligned_cols=204 Identities=18% Similarity=0.114 Sum_probs=117.5
Q ss_pred CcEEEEEEEecCCCcccc-cccccCCcccEEEeccCCCCccccccchhhhccCccCCcCcc-----------ccccccCC
Q 039822 326 KKILHLMLTLYSGALVPI-SIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLK-----------TLCELYNL 393 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~-----------~i~~L~~L 393 (711)
++++.+++.++..+..+. ...+.|++++.|+|+.|=+ .....+-+....+++|+.|+|+ .-..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhH-HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 578888888887776553 3344789999999988632 1223345666788888888881 12346788
Q ss_pred cEEecCCCCCCc--cCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCe
Q 039822 394 QRLDVTYCKNLE--ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRAC 471 (711)
Q Consensus 394 ~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L 471 (711)
+.|.|+.|. +. .+-..+..+|+|..|++.+|..+..-.....-+..|+.|++..+.... .........++.|..|
T Consensus 200 K~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQL 276 (505)
T ss_pred heEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccchhhh
Confidence 888888886 43 233334567888888888874332222223345666666665443332 2223444556666665
Q ss_pred eecCcC--CCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 472 SIYGLG--GVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 472 ~i~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
++..++ .+..+..........+++|+.|++..|.++... ....+..+++|+.|.+.++....
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~----------------sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR----------------SLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccc----------------ccchhhccchhhhhhcccccccc
Confidence 555432 112222222223345667777777777554332 12344445666666666655544
No 50
>PF13173 AAA_14: AAA domain
Probab=98.00 E-value=2.1e-05 Score=68.64 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=71.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||++++++++ .. .-..++|++.......... +.+ ..+.+.+....++.+++||++
T Consensus 12 ~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~i~iDEi- 70 (128)
T PF13173_consen 12 GVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGKKYIFIDEI- 70 (128)
T ss_pred CCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCCcEEEEehh-
Confidence 79999999999973 22 3356778876653331100 000 222333333347889999999
Q ss_pred CCCccCchhhHhhhccCCCCCEEEEEecchhhhhh------hCCcCeEECCCCChhhH
Q 039822 81 NEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI------MGSTDVISVNVLSEMEC 132 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~------~~~~~~~~l~~L~~~ea 132 (711)
....+|......+-+..+..+||+|+........ .+....+++.||+..|.
T Consensus 71 -q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 -QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4445787777777766667899999998765532 12234788999998774
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.99 E-value=4.7e-07 Score=93.36 Aligned_cols=204 Identities=19% Similarity=0.117 Sum_probs=140.4
Q ss_pred EEEEEecCCCccccccc-ccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEEecC
Q 039822 330 HLMLTLYSGALVPISIW-DNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLDVT 399 (711)
Q Consensus 330 ~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~l~ 399 (711)
++.+++.....+|...+ ..+..-...+++.|. ...+|..++.+-.|..|.| ..+++|..|.+|||+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR----~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR----FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc----cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence 44555555555554433 234445666777653 4467888888888887777 678899999999999
Q ss_pred CCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCC
Q 039822 400 YCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGV 479 (711)
Q Consensus 400 ~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 479 (711)
.|. +..+|..+..|+ |+.|-+++| +++.+|++++.+.+|..|+.+.+...+ .+..+..+..|+.|.+....-
T Consensus 130 ~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr~l~vrRn~l- 201 (722)
T KOG0532|consen 130 SNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLRDLNVRRNHL- 201 (722)
T ss_pred cch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh----chHHhhhHHHHHHHHHhhhhh-
Confidence 876 999999888776 788888887 899999999988888888877665544 667777888888777764211
Q ss_pred CChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhh-
Q 039822 480 SDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVM- 558 (711)
Q Consensus 480 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~- 558 (711)
...+..+..+ .|..|+++.|.+... +-.+..+.+|+.|.|.+|+... . |.-+.
T Consensus 202 ----~~lp~El~~L-pLi~lDfScNkis~i------------------Pv~fr~m~~Lq~l~LenNPLqS--P-PAqIC~ 255 (722)
T KOG0532|consen 202 ----EDLPEELCSL-PLIRLDFSCNKISYL------------------PVDFRKMRHLQVLQLENNPLQS--P-PAQICE 255 (722)
T ss_pred ----hhCCHHHhCC-ceeeeecccCceeec------------------chhhhhhhhheeeeeccCCCCC--C-hHHHHh
Confidence 2233344433 577888888854443 4567778899999999888776 2 33322
Q ss_pred --cCcCccEEeEeCC
Q 039822 559 --SLTNLRALVLKNC 571 (711)
Q Consensus 559 --~l~~L~~L~l~~~ 571 (711)
..-=.++|...-|
T Consensus 256 kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQAC 270 (722)
T ss_pred ccceeeeeeecchhc
Confidence 2223455666666
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=7e-07 Score=86.89 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred hcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc--CcchhhcCcCccEEe
Q 039822 490 LEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV--PRNWVMSLTNLRALV 567 (711)
Q Consensus 490 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~l~~L~~L~ 567 (711)
....+.|+.+....|.+.+.+ ...+-..+...++|+.+.+..+.+..... .-..+..+++|+.|+
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~g-------------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd 219 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGG-------------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD 219 (382)
T ss_pred cCCCcceEEEEeecccccccc-------------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee
Confidence 345567777777777554443 23333445555777777777666544110 011234677777777
Q ss_pred EeCCCCCCC----CC-CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcc
Q 039822 568 LKNCRNCEH----LP-PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAI 642 (711)
Q Consensus 568 l~~~~~l~~----l~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 642 (711)
|.++.--.. +. .+..+++|++|+++.|. ++.-+...+... .-..+|+|+.|.+.++. ++.-.. ...
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a------l~~~~p~L~vl~l~gNe-It~da~-~~l 290 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA------LKESAPSLEVLELAGNE-ITRDAA-LAL 290 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH------HhccCCCCceeccCcch-hHHHHH-HHH
Confidence 776631110 11 25556677777777775 444332211110 01235677777776632 221000 001
Q ss_pred ccccccCCcccEEeecCC
Q 039822 643 KGEIIIMPRLSFLEIGGC 660 (711)
Q Consensus 643 ~~~~~~l~~L~~L~l~~c 660 (711)
...+...|.|..|++++|
T Consensus 291 a~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHhcchhhHHhcCCcc
Confidence 111335667777777774
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.97 E-value=6.4e-05 Score=73.25 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=82.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ +........+++++..-.+.. ..+...+.+. -+||+||++
T Consensus 48 G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~~~~-~lLvIDdi~ 100 (226)
T TIGR03420 48 GSGKSHLLQAACA--AAEERGKSAIYLPLAELAQAD------------------------PEVLEGLEQA-DLVCLDDVE 100 (226)
T ss_pred CCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHHhH------------------------HHHHhhcccC-CEEEEeChh
Confidence 9999999999998 333344456677654322100 0111122232 389999995
Q ss_pred CCCcc-C-chhhHhhhcc-CCCCCEEEEEecchh---------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcch
Q 039822 81 NEDYC-K-WEPFYYCLKN-CLYGSKILITTRKET---------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSMEE 148 (711)
Q Consensus 81 ~~~~~-~-~~~~~~~l~~-~~~~s~iivTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 148 (711)
.-... . ...+...+.. ...+.++|+||+... +...+.....+++++++.++-..++...+...+....
T Consensus 101 ~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~ 180 (226)
T TIGR03420 101 AIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP 180 (226)
T ss_pred hhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 53322 2 2233333322 123458999987532 1222223468999999999999998776533222111
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 039822 149 RENLEKIGREIIRKCKGLPLAAKTIASL 176 (711)
Q Consensus 149 ~~~~~~~~~~i~~~~~g~Plai~~~a~~ 176 (711)
.+..+.+++.+.|.|..+..+...
T Consensus 181 ----~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 181 ----DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 234566777788888777666443
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.94 E-value=4.9e-06 Score=88.73 Aligned_cols=94 Identities=29% Similarity=0.354 Sum_probs=60.1
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccC-ccCCcCc---------cccccccCCcEEecCCCCCCccCCccccCCccC
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLT-CLRALKL---------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKL 417 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~-~L~~L~l---------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L 417 (711)
..+.+..|.+..+ .+..+|.....+. +|+.|++ ..++.+++|+.|++++|. +..+|...+.+++|
T Consensus 114 ~~~~l~~L~l~~n----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 114 ELTNLTSLDLDNN----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred cccceeEEecCCc----ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 4466677777654 3334555444453 6666666 245677777777777766 77777766677777
Q ss_pred ceeccCCCCccccccccCCCccccCccCee
Q 039822 418 MYLDNRWTHSLRFLSVGIGELIRLRGVSRF 447 (711)
Q Consensus 418 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~ 447 (711)
+.|++++| .+..+|..++.+..|+.|.+.
T Consensus 189 ~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 189 NNLDLSGN-KISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hheeccCC-ccccCchhhhhhhhhhhhhhc
Confidence 77777777 667777665555556665543
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.92 E-value=5.9e-06 Score=88.10 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=40.0
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccc
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRME 595 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~ 595 (711)
.+..+.++..|.+.++.... . +..+..+++++.|+++++ .+..++.++.+.+|+.|++++..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~--~-~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLED--L-PESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred hhhhcccccccccCCceeee--c-cchhccccccceeccccc-cccccccccccCccCEEeccCcc
Confidence 34445555555555555444 3 556667777777777777 56666667777777777777765
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=6.5e-05 Score=77.11 Aligned_cols=142 Identities=20% Similarity=0.310 Sum_probs=82.5
Q ss_pred HHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccc
Q 039822 526 RLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFL 605 (711)
Q Consensus 526 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 605 (711)
.....+..+.+++.|++++|.... + |. -.++|+.|.+++|..++.+|..- .++|+.|++++|.++..+|..+.
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c~L~s--L-P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDCDIES--L-PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCcc--c-CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccccc
Confidence 344445667899999999997666 6 42 34579999999999988888622 35899999999977776654321
Q ss_pred cCCC-CCCCCcccCC-CccceeecccCcccccccccCccccccccC-CcccEEeecCCCCCcCCCcCCCCCCCccEEEEe
Q 039822 606 GVES-DTDGSSVIAF-PKLKHLKFYDMEELEEWDYGTAIKGEIIIM-PRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIH 682 (711)
Q Consensus 606 ~~~~-~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~ 682 (711)
...- ......+..+ ++|+.|.+.++......... ..+ ++|++|.+.+|..+. +|..+ ..+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp-------~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID-------NLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccc-------cccCCcccEEEecCCCccc-Ccccc--cccCcEEEec
Confidence 1100 0000011222 24555555332211111000 012 478888888876543 44333 3567777776
Q ss_pred cC
Q 039822 683 GC 684 (711)
Q Consensus 683 ~c 684 (711)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.7e-05 Score=53.84 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=33.4
Q ss_pred cCCcEEecCCCCCCccCCccccCCccCceeccCCCCcccccc
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLS 432 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp 432 (711)
++|++|++++|. +..+|..+++|++|+.|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 479999999986 9999998999999999999999 566554
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=2.7e-05 Score=57.81 Aligned_cols=56 Identities=30% Similarity=0.516 Sum_probs=26.5
Q ss_pred CccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeeccc
Q 039822 536 NLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRM 594 (711)
Q Consensus 536 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~ 594 (711)
+|+.|++++|.... +++.++..+++|+.|++++| .++.++. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESE--ECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555554444 43444555555555555544 3333332 444444444444443
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.73 E-value=3.5e-05 Score=57.17 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=40.7
Q ss_pred CccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCc
Q 039822 620 PKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 620 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~ 685 (711)
|+|++|+++++ +++.++.. .+..+++|++|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-----~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-----SFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT-----TTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH-----HHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45777777774 56666532 456778888888886 46777765 55677888888887775
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=5.9e-05 Score=77.42 Aligned_cols=100 Identities=21% Similarity=0.349 Sum_probs=70.4
Q ss_pred cCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDY 638 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 638 (711)
.+.+++.|++++| .++.+|. ..++|+.|.+.+|.+++.++.. -.++|++|.+++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~--------------LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGS--------------IPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCch--------------hhhhhhheEccCccccccccc
Confidence 5789999999999 8888883 2347999999999988777652 135799999999987765542
Q ss_pred cCccccccccCCcccEEeecC--CCCCcCCCcCCC------------------CCCCccEEEEecCcch
Q 039822 639 GTAIKGEIIIMPRLSFLEIGG--CRKLKALPDHLL------------------QKTTLQRLDIHGCPIF 687 (711)
Q Consensus 639 ~~~~~~~~~~l~~L~~L~l~~--c~~l~~lp~~~~------------------~~~~L~~l~l~~c~~l 687 (711)
+|+.|.+.+ |..+..+|..+. -+++|+.|++++|..+
T Consensus 113 ------------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 113 ------------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ------------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 344444432 333444544221 1358999999999865
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.65 E-value=0.00084 Score=63.13 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=63.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+.+-++|+|++...+....+.+...+......+.+|++|++. .+.... .....+.+.+++.++..+.+.+. +.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----gi- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----GI- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----CC-
Confidence 556789999996655556677777777655667777777653 332222 23468999999999998888776 11
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
. .+.+..|++.++|.|.
T Consensus 170 ~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred C-----HHHHHHHHHHcCCCcc
Confidence 1 2457889999999885
No 62
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.62 E-value=0.0042 Score=69.20 Aligned_cols=176 Identities=7% Similarity=0.030 Sum_probs=98.3
Q ss_pred CccHHHHHHHHhcChhh---hccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHHcC---Cce
Q 039822 1 GIGKTTLAQLAYNNDDV---KNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPD-VAEFQSLMQHIQEFVE---GEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~---~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~---~~r 71 (711)
|.|||+.++.|.+.-+. ....+ .+++|......+...+++.|++++....+. .....+....+.+.+. +..
T Consensus 791 GTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v 870 (1164)
T PTZ00112 791 GTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNV 870 (1164)
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccc
Confidence 89999999999874211 11222 356677777778999999999999654432 2233344555555442 234
Q ss_pred EEEEEeCCCCCCccCchhhHhhhcc-CCCCCEEEE--Eecchhhh--------hhhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKN-CLYGSKILI--TTRKETVA--------CIMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~-~~~~s~iiv--TtR~~~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
.+||||++..-....-+.+...+.+ ...+++|+| +|...+.. ..++ ...+..+|++.++-.+++..++
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RA 949 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERL 949 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHH
Confidence 6899999843221111112211221 123555555 33322221 1112 2235669999999999999887
Q ss_pred cCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 141 FFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
........+..+.-+|..+++..|-.=.||.++-.+.
T Consensus 950 e~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 950 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 5433323334444455545544455566666665444
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0011 Score=66.59 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=79.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+||||||+.++. .....| ..++...+-. .+..+..+.-++ ...++|.+|++|.|
T Consensus 58 G~GKTTlA~liA~--~~~~~f-----~~~sAv~~gv-----------------kdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 58 GTGKTTLARLIAG--TTNAAF-----EALSAVTSGV-----------------KDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred CCCHHHHHHHHHH--hhCCce-----EEeccccccH-----------------HHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 8999999999998 444444 3333333222 222222323222 23488999999999
Q ss_pred CCCCccCchhhHhhhccCCCCCEEEEEecchhhhh-----hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcch--hhhH
Q 039822 80 WNEDYCKWEPFYYCLKNCLYGSKILITTRKETVAC-----IMGSTDVISVNVLSEMECWSVFESLAFFGNSMEE--RENL 152 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~--~~~~ 152 (711)
-.-+..+-+.+++... .|.-|+|-+..+...- ......++++++|+.+|-.+++.+.+-....... ...+
T Consensus 114 HRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 114 HRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred hhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 5544444455544443 4777777544432221 1133579999999999999999884322111111 0001
Q ss_pred -HHHHHHHHHhcCCCh
Q 039822 153 -EKIGREIIRKCKGLP 167 (711)
Q Consensus 153 -~~~~~~i~~~~~g~P 167 (711)
.+.-.-++..+.|--
T Consensus 191 ~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 191 DEEALDYLVRLSNGDA 206 (436)
T ss_pred CHHHHHHHHHhcCchH
Confidence 234456777777754
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.52 E-value=0.0017 Score=69.14 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEE--ecchh--hh-hhhCCcCeEECCCCChhhHHHHHHHHhcC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILIT--TRKET--VA-CIMGSTDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivT--tR~~~--~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
.+++.+|++|+++.-.....+.+...+.. +..++|. |.+.. +. ........+.+++++.++...++.+....
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 45788999999977655455555554443 4455553 33321 11 11122468899999999999999876532
Q ss_pred CCCcchhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 143 GNSMEERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
..... ..--.+....|++.++|.+..+..+.
T Consensus 167 ~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11100 01113456778899999987664443
No 65
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.51 E-value=0.00017 Score=70.16 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=51.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC--CCHHHHHHHHHH-----HhcCCCCC-hhhHHHHHHHHHHH-cCCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP--FDEFRIARSIIE-----ALTGSAPD-VAEFQSLMQHIQEF-VEGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~-----~l~~~~~~-~~~~~~~~~~~~~~-l~~~r 71 (711)
|+|||||+++++++.... +|+.++|+.+... .+..++++.+.. .++..... ..-..........+ -.+++
T Consensus 26 G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 104 (249)
T cd01128 26 KAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKD 104 (249)
T ss_pred CCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 899999999999964333 8999999986555 789999999833 33321100 01111222223322 24789
Q ss_pred EEEEEeCC
Q 039822 72 FLLVLDDV 79 (711)
Q Consensus 72 ~LlvlDdv 79 (711)
+++++|++
T Consensus 105 vll~iDei 112 (249)
T cd01128 105 VVILLDSI 112 (249)
T ss_pred EEEEEECH
Confidence 99999998
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0011 Score=67.90 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=90.2
Q ss_pred CccHHHHHHHHhcC----hhhhccCCceEEEE-eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNN----DDVKNHFEKRIWVC-VSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~----~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~Llv 75 (711)
|+||||+|+.++.. .....|.|...|.. .+......+ .+++...+.... ..+++-++|
T Consensus 36 G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p----------------~~~~~kv~i 98 (313)
T PRK05564 36 GIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP----------------YEGDKKVII 98 (313)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc----------------ccCCceEEE
Confidence 89999999998872 11223444444443 222222222 222223222111 224566778
Q ss_pred EeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhh-hh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHH
Q 039822 76 LDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVA-CI-MGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLE 153 (711)
Q Consensus 76 lDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 153 (711)
+|+++..+...++.+...+.....++.+|++|.+.+-. .. ......+++.+++.++....+.+...+ .. .
T Consensus 99 I~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-~~-------~ 170 (313)
T PRK05564 99 IYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND-IK-------E 170 (313)
T ss_pred EechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-CC-------H
Confidence 88886667677888988888777788999888765322 21 223568999999999998877654311 11 1
Q ss_pred HHHHHHHHhcCCChHHHHHH
Q 039822 154 KIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 154 ~~~~~i~~~~~g~Plai~~~ 173 (711)
+.+..++..++|.|..+...
T Consensus 171 ~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 171 EEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 22567888999988655433
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0021 Score=67.23 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=64.2
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+...++.+...+.......++|++|.+. .+... ......+++++++.++..+.+...+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456699999996655445666766666555566777777553 33322 2234689999999999998887765443321
Q ss_pred chhhhHHHHHHHHHHhcCCChHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
.. .+.+..|++.++|.|-.
T Consensus 198 i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 TD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred CC----HHHHHHHHHHcCCCHHH
Confidence 11 23467788899998853
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.48 E-value=1.9e-05 Score=86.93 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=27.8
Q ss_pred cCCcccEEeecCCCCCcCCCcC-CCC-CCCccEEEEecCcchhhh
Q 039822 648 IMPRLSFLEIGGCRKLKALPDH-LLQ-KTTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 648 ~l~~L~~L~l~~c~~l~~lp~~-~~~-~~~L~~l~l~~c~~l~~~ 690 (711)
...+++.|.+..|...+.-.-. ... +..+..+++.+|+.++..
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3344888888888766543211 111 567888888888887764
No 69
>PRK08727 hypothetical protein; Validated
Probab=97.47 E-value=0.0013 Score=64.08 Aligned_cols=139 Identities=17% Similarity=0.092 Sum_probs=79.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+|+..+++ +.......++|++..+ ....+. . ..+.+. +.-+||+||+.
T Consensus 51 G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~~--------------~----~~~~l~-~~dlLiIDDi~ 103 (233)
T PRK08727 51 GTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRLR--------------D----ALEALE-GRSLVALDGLE 103 (233)
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhHH--------------H----HHHHHh-cCCEEEEeCcc
Confidence 8999999999998 4444445667776432 111100 0 111121 23489999984
Q ss_pred CCCc-cCchh-hHhhhcc-CCCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcch
Q 039822 81 NEDY-CKWEP-FYYCLKN-CLYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSMEE 148 (711)
Q Consensus 81 ~~~~-~~~~~-~~~~l~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 148 (711)
.... ..|.. +...+.. ...+..||+|++.. ++...+.....+++++++.++-.+++.+.+...+-..+
T Consensus 104 ~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~ 183 (233)
T PRK08727 104 SIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD 183 (233)
T ss_pred cccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3221 12222 2222211 12366799999853 22223334568999999999999999987654332221
Q ss_pred hhhHHHHHHHHHHhcCCChHHH
Q 039822 149 RENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 149 ~~~~~~~~~~i~~~~~g~Plai 170 (711)
.+...-|++.+.|-.-++
T Consensus 184 ----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 184 ----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred ----HHHHHHHHHhCCCCHHHH
Confidence 234566777777655443
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=4.1e-05 Score=85.53 Aligned_cols=82 Identities=24% Similarity=0.164 Sum_probs=49.8
Q ss_pred ccCCcEEecCCCCCC--ccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCcc
Q 039822 390 LYNLQRLDVTYCKNL--EELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNL 467 (711)
Q Consensus 390 L~~L~~L~l~~~~~l--~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~ 467 (711)
|+.|++|.++|-. + .++-.-..++++|+.||++++ ++..+ .+++.|++||.|.+.+....+ ...+..|-.|++
T Consensus 147 LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFES--YQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCc--hhhHHHHhcccC
Confidence 6677777776622 2 122233456777777777777 55555 567777777777665554443 345566666777
Q ss_pred CCCeeecCc
Q 039822 468 LRACSIYGL 476 (711)
Q Consensus 468 L~~L~i~~~ 476 (711)
|+.|+++.-
T Consensus 222 L~vLDIS~~ 230 (699)
T KOG3665|consen 222 LRVLDISRD 230 (699)
T ss_pred CCeeecccc
Confidence 777777653
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0014 Score=73.58 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|||++...+....+.++..+.......++|++|.+. .+... ...-..+++++++.++..+.+.+.+...+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677899999997766667777777666555566677666553 33322 223468999999999999988776533222
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAAK 171 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai~ 171 (711)
.. -.+.+..|++.++|.|-.+.
T Consensus 197 ~~----edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 197 PF----EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHH
Confidence 11 13456779999999885443
No 72
>PLN03150 hypothetical protein; Provisional
Probab=97.41 E-value=0.00013 Score=81.83 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=48.8
Q ss_pred ccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcEEecCCCCCCccCCccccCCccCceec
Q 039822 352 LRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLD 421 (711)
Q Consensus 352 L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~ 421 (711)
++.|+|.+|... ..+|..++++++|+.|+| ..++.+.+|++|+|++|.-...+|..+++|++|++|+
T Consensus 420 v~~L~L~~n~L~---g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLR---GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCcc---ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 566666665322 234555665655555555 2355666666777776653335666667777777777
Q ss_pred cCCCCccccccccCCC
Q 039822 422 NRWTHSLRFLSVGIGE 437 (711)
Q Consensus 422 l~~~~~l~~lp~~i~~ 437 (711)
+++|.....+|..++.
T Consensus 497 Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 497 LNGNSLSGRVPAALGG 512 (623)
T ss_pred CcCCcccccCChHHhh
Confidence 7766544556655543
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0026 Score=68.85 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++......++.+...+........+|++|.. ..+...+ .....+++.+++.++....+.+.+...+..
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 55678999999766656677777777665555555555543 3433322 234689999999999999998876544332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
. -.+.+..|++.++|.+--+
T Consensus 195 i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 2 1345677999999988544
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0024 Score=68.81 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=66.1
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|+++.-+...++.+...+......+.+|++| +...+.... .....+++++++.++....+.+.+...+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567789999997766667788877777655566666544 444444322 23468899999999999999888754433
Q ss_pred cchhhhHHHHHHHHHHhcCCChH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
... .+....|++.++|.+-
T Consensus 206 ~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 206 KTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred CCC----HHHHHHHHHHcCCCHH
Confidence 221 2345668888988763
No 75
>PRK09087 hypothetical protein; Validated
Probab=97.38 E-value=0.0023 Score=61.76 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=58.8
Q ss_pred EEEEeCCCCC--CccCchhhHhhhccCCCCCEEEEEecc---------hhhhhhhCCcCeEECCCCChhhHHHHHHHHhc
Q 039822 73 LLVLDDVWNE--DYCKWEPFYYCLKNCLYGSKILITTRK---------ETVACIMGSTDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 73 LlvlDdv~~~--~~~~~~~~~~~l~~~~~~s~iivTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
++++||+.-. +++.+..+...+.. .|..||+|++. .+....+.....+++++++.++-.+++.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 7888999432 12222222222222 36789999974 33444455678999999999999999988875
Q ss_pred CCCCcchhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 142 FGNSMEERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
..+-... .+...-|++.+.|..-++..+
T Consensus 168 ~~~~~l~----~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 168 DRQLYVD----PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HcCCCCC----HHHHHHHHHHhhhhHHHHHHH
Confidence 4322221 344566777777766655543
No 76
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.02 Score=59.38 Aligned_cols=171 Identities=12% Similarity=0.165 Sum_probs=105.1
Q ss_pred CccHHHHHHHHhcChhhhccCCc--eEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC--CceEEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEK--RIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE--GEKFLLVL 76 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~--~~r~Llvl 76 (711)
|+|||+.++.+++ ++...... +++|......++.+++..|++++...........+..+.+.+.+. ++.+++||
T Consensus 52 GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvL 129 (366)
T COG1474 52 GTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVIL 129 (366)
T ss_pred CCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEE
Confidence 8999999999999 55555432 689999999999999999999997444445566677777777774 57899999
Q ss_pred eCCCCCCccCchhhHhhhccCCC-CCEEEE--EecchhhhhhhCC-------cCeEECCCCChhhHHHHHHHHhcCC-CC
Q 039822 77 DDVWNEDYCKWEPFYYCLKNCLY-GSKILI--TTRKETVACIMGS-------TDVISVNVLSEMECWSVFESLAFFG-NS 145 (711)
Q Consensus 77 Ddv~~~~~~~~~~~~~~l~~~~~-~s~iiv--TtR~~~~~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~~~~~-~~ 145 (711)
|++..-....-+.+-..+..... .++|++ .+-+......+.+ ...+..+|.+.+|-..++..++-.. .+
T Consensus 130 DEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~ 209 (366)
T COG1474 130 DEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSA 209 (366)
T ss_pred cchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 99843221111222222222221 344333 3333333333221 2347789999999999998876422 22
Q ss_pred cchhhhHHHHHHHHHHhcCC-ChHHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKG-LPLAAKTI 173 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 173 (711)
...++..-+++..++..-+| .=.||...
T Consensus 210 ~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 210 GVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred CCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 22334444555555555554 44454444
No 77
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0024 Score=70.47 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
++.-++|||++...+...++.++..+.......++|++|++.+ +. +....-..+.++.++.++..+.+.+.....+..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4556888999976666667777777766556778888887753 32 222234689999999999999998776433322
Q ss_pred chhhhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLP-LAAKTIAS 175 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~P-lai~~~a~ 175 (711)
.. .+....|++.++|.. -|+..+-.
T Consensus 198 id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 198 FE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 344677888998855 46555433
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0025 Score=69.52 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=65.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+|..-+....+.+...+.....+.++|++|.+.. +. +.......+++++++.++..+.+.+.+...+..
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 5666899999966555566667766665555678888876642 22 222335789999999999999988776443332
Q ss_pred chhhhHHHHHHHHHHhcCCChHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
.. .+....|++.++|.+-.
T Consensus 197 id----~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 197 AD----QDAIWQIAESAQGSLRD 215 (702)
T ss_pred CC----HHHHHHHHHHcCCCHHH
Confidence 21 23456788889887743
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.30 E-value=0.0036 Score=60.96 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=79.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+|+..+++ .....-..+.|+.+..... ...+..+.+. . --++++||+.
T Consensus 55 G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~-~dlliiDdi~ 107 (235)
T PRK08084 55 GAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q-LSLVCIDNIE 107 (235)
T ss_pred CCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-CCEEEEeChh
Confidence 8999999999998 4443334566776643110 0011111111 1 1378999994
Q ss_pred CCCc-cCchhhH-hhhccC-CCC-CEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 81 NEDY-CKWEPFY-YCLKNC-LYG-SKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 81 ~~~~-~~~~~~~-~~l~~~-~~~-s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
.... ..|.... ..+... ..| .++|+||+.. ++...+....+++++++++++-.+++.+++...+- .
T Consensus 108 ~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~-~ 186 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF-E 186 (235)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC-C
Confidence 4221 2333222 222211 123 4799999754 33344455679999999999999998776644322 1
Q ss_pred hhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 148 ERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.+ .+...-|++.+.|..-++..+
T Consensus 187 l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 187 LP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CC---HHHHHHHHHhhcCCHHHHHHH
Confidence 11 344566777776655444433
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.002 Score=70.10 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.++.-++|||++...+...++.++..+..-....++|++|.+ ..+...+ ..-..+.++.++.++..+.+.+.....+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 356678999999777766777777766654455666655554 4443222 22468999999999999988876533222
Q ss_pred cchhhhHHHHHHHHHHhcCCChHH-HHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLA-AKTIAS 175 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pla-i~~~a~ 175 (711)
... .+....|++.++|.|.. +..+-.
T Consensus 202 ~~d----~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 202 AHE----VNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 23457789999998854 443333
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.28 E-value=0.0024 Score=62.12 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||..+++. ....=..+++++...... . + .... ..-++|+||+.
T Consensus 52 G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~~------~----~------------------~~~~-~~~~liiDdi~ 100 (227)
T PRK08903 52 GSGRSHLLQALVAD--ASYGGRNARYLDAASPLL------A----F------------------DFDP-EAELYAVDDVE 100 (227)
T ss_pred CCCHHHHHHHHHHH--HHhCCCcEEEEehHHhHH------H----H------------------hhcc-cCCEEEEeChh
Confidence 89999999999983 222212455665433110 0 0 1122 23468889995
Q ss_pred CCCccCchhhHhhhccC-CCCC-EEEEEecchhhhh--------hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhh
Q 039822 81 NEDYCKWEPFYYCLKNC-LYGS-KILITTRKETVAC--------IMGSTDVISVNVLSEMECWSVFESLAFFGNSMEERE 150 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~-~~~s-~iivTtR~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 150 (711)
..+...-..+...+... ..+. .+|+|++...... .+.....++++++++++-..++.+.+...+... .
T Consensus 101 ~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l-~- 178 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQL-A- 178 (227)
T ss_pred hcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC-C-
Confidence 43322222333333321 1243 3666666432111 222246889999999887777765443322211 1
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 151 NLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 151 ~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
.+....+++...|.+..+..+-..+
T Consensus 179 --~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 179 --DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred --HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2456677788889998877776655
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.28 E-value=0.0034 Score=65.33 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+.+-+||+||+..-.......+...+......+++|+|+... .+.... .....+++.+++.++....+.+.+...+..
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 345589999995443333344554454444567788887543 222222 224578899999999999998876444332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKT 172 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~ 172 (711)
.. .+.+..+++.++|.+-.+..
T Consensus 204 ~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 YD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 33467788888887655443
No 83
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.27 E-value=0.00048 Score=70.09 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=51.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCh---hh---HHHHHHHHHHH-cCCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF--DEFRIARSIIEALTGSAPDV---AE---FQSLMQHIQEF-VEGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~---~~---~~~~~~~~~~~-l~~~r 71 (711)
|+||||||++++++.... +|+.++||.+...+ +..++++.|...+-...-+. .. .........+. -.+++
T Consensus 179 GvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~d 257 (416)
T PRK09376 179 KAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKD 257 (416)
T ss_pred CCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999953333 89999999987776 78888888864332111111 11 11222222222 25789
Q ss_pred EEEEEeCC
Q 039822 72 FLLVLDDV 79 (711)
Q Consensus 72 ~LlvlDdv 79 (711)
++|++|++
T Consensus 258 VlL~iDsI 265 (416)
T PRK09376 258 VVILLDSI 265 (416)
T ss_pred EEEEEECh
Confidence 99999998
No 84
>PRK05642 DNA replication initiation factor; Validated
Probab=97.27 E-value=0.0037 Score=60.87 Aligned_cols=144 Identities=16% Similarity=0.202 Sum_probs=81.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.|+..+++ +....-..++|++..+ +... . ..+.+.+++-. ++|+||+.
T Consensus 55 G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~d-~LiiDDi~ 107 (234)
T PRK05642 55 GVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQYE-LVCLDDLD 107 (234)
T ss_pred CCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhCC-EEEEechh
Confidence 8999999999987 4433334677876542 1110 0 11222333323 67889994
Q ss_pred CCC-ccCchh-hHhhhccC-CCCCEEEEEecchh---------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcch
Q 039822 81 NED-YCKWEP-FYYCLKNC-LYGSKILITTRKET---------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSMEE 148 (711)
Q Consensus 81 ~~~-~~~~~~-~~~~l~~~-~~~s~iivTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 148 (711)
-.. ...|.. +...+... ..|..||+|++... +...+....++++++++.++-.+++.+++...+-..
T Consensus 108 ~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l- 186 (234)
T PRK05642 108 VIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL- 186 (234)
T ss_pred hhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 221 123333 33323221 23678999987532 222233456889999999999999987664432211
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039822 149 RENLEKIGREIIRKCKGLPLAAKTIAS 175 (711)
Q Consensus 149 ~~~~~~~~~~i~~~~~g~Plai~~~a~ 175 (711)
+ .+...-|++.+.|..-++..+-.
T Consensus 187 ~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 187 T---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred C---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 1 34566677777766555444433
No 85
>PLN03150 hypothetical protein; Provisional
Probab=97.25 E-value=0.00037 Score=78.17 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=80.7
Q ss_pred cEEEEEEEecCCCc-ccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 327 KILHLMLTLYSGAL-VPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 327 ~~~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
.+..|.+.++.+.. +|..+ ..+++|+.|+|++|.+. ..+|..++++++|++|+| ..+++|.+|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~---g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIR---GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCccc---CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 47788888887764 55554 48999999999987432 357889999999999999 45889999999
Q ss_pred EecCCCCCCccCCccccCC-ccCceeccCCCCcccccc
Q 039822 396 LDVTYCKNLEELPPGIGKL-RKLMYLDNRWTHSLRFLS 432 (711)
Q Consensus 396 L~l~~~~~l~~lP~~i~~L-~~L~~L~l~~~~~l~~lp 432 (711)
|+|++|.....+|..++.+ .++..+++.+|..+...|
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999988556899988764 577889999886555444
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0037 Score=67.85 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.++..+........+|++|.+ ..+. +.......+++++++.++..+.+.+.+...+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 456779999999766666677777777765556666655544 3333 22233578999999999988888765533222
Q ss_pred cchhhhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLP-LAAKTIAS 175 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~P-lai~~~a~ 175 (711)
.. -......|++.++|.+ .|+..+-.
T Consensus 197 ~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 197 NS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1234567888888866 45555443
No 87
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.0011 Score=59.38 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=51.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+++++ .....-..++++..............+... ............++.++|+||++
T Consensus 29 G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 29 GTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeChh
Confidence 8999999999998 343323456677655433322211111100 01111122334567899999996
Q ss_pred CCCccCchhhHhhhccC------CCCCEEEEEecchh
Q 039822 81 NEDYCKWEPFYYCLKNC------LYGSKILITTRKET 111 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~------~~~s~iivTtR~~~ 111 (711)
.........+...+... ..+.+||+||....
T Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 95 SLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 53222223333333322 35778888887654
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0046 Score=64.70 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+....+.+...+.....+..+|++|.+. .+...+ .....+.+++++.++..+.+.+.. +.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC-
Confidence 455688889997766666666766666555566666666654 333222 335789999999999998886432 11
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKT 172 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~ 172 (711)
. .+.+..+++.++|.|.....
T Consensus 192 --~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 192 --D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred --C---HHHHHHHHHHcCCCHHHHHH
Confidence 1 23367789999999964433
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0045 Score=66.28 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=93.1
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+|+.++++ .+.... ..+++++. .++...+...+.... .....+.+.++. .-+||+||
T Consensus 151 G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~dvLiIDD 214 (450)
T PRK14087 151 GMGKTHLLKAAKN--YIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ-NDVLIIDD 214 (450)
T ss_pred CCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-CCEEEEec
Confidence 8999999999998 444322 24455543 345566665553211 122334444443 34788899
Q ss_pred CCCCCc--cCchhhHhhhcc-CCCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDY--CKWEPFYYCLKN-CLYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~--~~~~~~~~~l~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+..... ...+.+...+.. ...+..||+|+... ++...+...-.+.+++++.++-.+++.+.+...+..
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~ 294 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK 294 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC
Confidence 943221 111223222221 12355788887632 333344456788899999999999999887543210
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
. .--.+...-|++.+.|.|-.+..+...+
T Consensus 295 ~--~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 295 Q--EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred C--CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 0 1114567889999999998777665443
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0063 Score=65.07 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-+....+.+...+..-.+..++|++|.+ ..+... ......+++++++.++..+.+.+.+...+..
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45668999999655555566777777666667777776643 333332 2335788999999999999998876544332
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
.. .+.+..|++.++|.+-
T Consensus 195 i~----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 195 HD----EESLKLIAENSSGSMR 212 (491)
T ss_pred CC----HHHHHHHHHHcCCCHH
Confidence 21 2345678889988774
No 91
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.008 Score=69.58 Aligned_cols=216 Identities=14% Similarity=0.132 Sum_probs=123.3
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCC----CCCEE--EEEecch--hhhhhhCCcCeEECCCCChhhHHHHHHHH
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCL----YGSKI--LITTRKE--TVACIMGSTDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~----~~s~i--ivTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
+.++.++|+||+-..+....+-+........ ....+ +.|.+.. .+...-.....+.+.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3459999999994443333333322221111 01122 2222222 11111122468999999999999999877
Q ss_pred hcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC------CHHHHHHHHHhhhhhhhhhcccchhhHHhhhh
Q 039822 140 AFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKN------TEKEWKNILESEIWELEEVEKGLLAPLMLSYY 213 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~------~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~ 213 (711)
...... ........|+++..|+|+-+..+-..+..+. +...|..-... .... ...+.+...+..-.+
T Consensus 232 l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~-~~~~~vv~~l~~rl~ 304 (849)
T COG3899 232 LGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGIL-ATTDAVVEFLAARLQ 304 (849)
T ss_pred hCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCc-hhhHHHHHHHHHHHh
Confidence 644322 2245678899999999999999988887642 22344322111 1111 222335566888899
Q ss_pred cCChhhhhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCcc-EEEE---
Q 039822 214 ELPSKVKQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGE-IVCC--- 289 (711)
Q Consensus 214 ~L~~~~~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~-~~~~--- 289 (711)
.||...+..+...|++-..+. ...|-..+- ......+...++.|....++...+....+. +...
T Consensus 305 kL~~~t~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 305 KLPGTTREVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred cCCHHHHHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence 999999999999999865554 444443331 133455666677777766664321111111 1111
Q ss_pred EechHHHHHHHHh
Q 039822 290 KMHDLVHDFARYI 302 (711)
Q Consensus 290 ~mh~li~~~~~~~ 302 (711)
-.|+++++.+=..
T Consensus 373 F~H~~vqqaaY~~ 385 (849)
T COG3899 373 FLHDRVQQAAYNL 385 (849)
T ss_pred hhHHHHHHHHhcc
Confidence 3688888766433
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0049 Score=68.05 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.++..+.......++|++|.+ ..+.. .......+.+++++.++....+.+.....+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 466779999999776666777777766655556666666655 33332 2223578999999999999888776533222
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
... ......|++.++|.+-..
T Consensus 197 ~~e----~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 197 PFE----PRALQLLARAADGSMRDA 217 (647)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 111 234567899999987533
No 93
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.08 E-value=7.3e-05 Score=82.25 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=25.7
Q ss_pred ccCCcEEecCCCCCCcc--CCccccCCccCceeccCCC
Q 039822 390 LYNLQRLDVTYCKNLEE--LPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 390 L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~ 425 (711)
+++|+.|.+.+|..+.. +-.....+++|+.|++++|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 57777777777766665 3345677888888888874
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.01 E-value=0.015 Score=60.93 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++........+.+...+......+.+|++|.+.+ +... ......++.++++.++..+.+...+...+..
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566899999855444455666666655445667777765443 2222 2234578889999999988888766443321
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
.. .+.+..+++.++|.|..+....
T Consensus 196 i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 IE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC----HHHHHHHHHHcCCChHHHHHHH
Confidence 11 2456778899999886555443
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0063 Score=67.06 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+......++..+.......++|++|.+. .+. +..+.-..+.+++++.++....+.+.+...+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 566789999996554444555666665544566777777553 222 111223567888999999999888776443332
Q ss_pred chhhhHHHHHHHHHHhcCCChH-HHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPL-AAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 173 (711)
.. .+....|++.++|.+. |+..+
T Consensus 198 id----~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 198 YE----PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 21 2346778899988874 33444
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.001 Score=68.95 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++.++|+|++...+......+...+..-..++.+|++|...+ +...+ .....+.+.+++.++..+.+...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-
Confidence 5567999999988777777777777766555666777776653 33222 23569999999999999999775411 1
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
+ ......++..++|.|.....+.
T Consensus 217 ---~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 ---P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ---C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1112568999999997554443
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0093 Score=65.76 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
++.-++|||+|...+...++.++..+..-....++|++|.+ ..+. +.......+++++++.++..+.+.+.+...+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44568899999777666677777766655456667666544 3333 222335789999999999998888765443332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
.. .+....|++.++|.+-.+
T Consensus 203 ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 203 AE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred CC----HHHHHHHHHHcCCCHHHH
Confidence 21 234567888888876433
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.011 Score=63.64 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+.... .....+++.+++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 56779999998544434455566666554434454444443 3333322 234688999999999988888776443322
Q ss_pred chhhhHHHHHHHHHHhcCC-ChHHHHHHHHHh
Q 039822 147 EERENLEKIGREIIRKCKG-LPLAAKTIASLL 177 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g-~Plai~~~a~~l 177 (711)
.. .+....|++.++| ++.|+..+....
T Consensus 196 i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 ID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22 2345667776654 567777766543
No 99
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.012 Score=60.14 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++..+....+.+...+..-..++.+|++|.+. .+... ...-+.+.+.+++.+++.+.+...... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-SD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-CC-
Confidence 334445679998888777888877776655677778777765 33322 233568999999999999988765311 11
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.+.+..++..++|.|.....+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 122456788999999654433
No 100
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0048 Score=63.76 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=87.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|.|||.|+.++++ ......+....+.++. +.....+...+.. .....+++.. .-=++++||++
T Consensus 123 GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq 185 (408)
T COG0593 123 GLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY--SLDLLLIDDIQ 185 (408)
T ss_pred CCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--ccCeeeechHh
Confidence 8999999999999 6666665333333222 2233333333321 2233445555 34488899984
Q ss_pred CCC-----ccCchhhHhhhccCCCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 81 NED-----YCKWEPFYYCLKNCLYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 81 ~~~-----~~~~~~~~~~l~~~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
--. +++...+...+... |-.||+|++.. ++...++..-.+.+.+.+.+.-..++.+++...+..
T Consensus 186 ~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~ 263 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE 263 (408)
T ss_pred HhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 311 12222222223332 44899999642 344445567799999999999999999877655543
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.+..-..-++..+..-.+-+.-|+..+
T Consensus 264 i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 264 IPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred CCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 433333444444444444444444443
No 101
>PRK04195 replication factor C large subunit; Provisional
Probab=96.95 E-value=0.071 Score=58.16 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=83.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||+|..++++ .. |+ ++-++.+...+.. ..+.++....... .....++-+||+|+++
T Consensus 49 G~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD 108 (482)
T PRK04195 49 GVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVAGEAATSG--------------SLFGARRKLILLDEVD 108 (482)
T ss_pred CCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHHHHhhccC--------------cccCCCCeEEEEecCc
Confidence 89999999999983 31 22 3334444322222 2222222221111 0011367899999995
Q ss_pred CCCc----cCchhhHhhhccCCCCCEEEEEecchh-hhh--hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHH
Q 039822 81 NEDY----CKWEPFYYCLKNCLYGSKILITTRKET-VAC--IMGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLE 153 (711)
Q Consensus 81 ~~~~----~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 153 (711)
.-.. ..+..+...+.. .+..||+|+.+.. ... .-.....+++++++.++....+.+.+...+.... .
T Consensus 109 ~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~ 182 (482)
T PRK04195 109 GIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----D 182 (482)
T ss_pred ccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----H
Confidence 5322 123444444432 2445777775432 111 1123468899999999999888877654433222 3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 039822 154 KIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 154 ~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
+....|++.++|..-++......+
T Consensus 183 eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 183 EALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456788899988776554444433
No 102
>PLN03025 replication factor C subunit; Provisional
Probab=96.95 E-value=0.0074 Score=61.98 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=60.3
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
++.-++|+|++...+......+...+......+++|+++... .+.. .......+++++++.++....+...+...+..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456789999996655444445555454444567777777543 2221 11223578999999999999988776543332
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
.. .+....|++.++|..-
T Consensus 178 i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 178 YV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred CC----HHHHHHHHHHcCCCHH
Confidence 22 2346778888888663
No 103
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0084 Score=65.11 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
++.-++|+|+|..-+....+.+...+......+++|++|.+. .+. +.......+++++++.++....+...+...+..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 556688999997666566667777666655567777766543 332 222224678899999998887776665433322
Q ss_pred chhhhHHHHHHHHHHhcCCChHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
.. .+....|++.++|.+..
T Consensus 198 ~~----~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 198 FE----NAALDLLARAANGSVRD 216 (509)
T ss_pred CC----HHHHHHHHHHcCCcHHH
Confidence 21 23356688888887743
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0068 Score=64.14 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+...++.+...+....+.+.+|++| +...+.... .....+++++++.++..+.+...+...+..
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 556788999996655556777877777665666766655 434443222 223578899999999888887765332221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
. -.+.+..|++.++|.+--+
T Consensus 206 i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 V----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 1345778999999977533
No 105
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=0.00017 Score=77.07 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=57.0
Q ss_pred cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhc
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKK 464 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 464 (711)
..++.+.+|+.|++.++. ++.+...+.+|++|++|++++| .+..+. ++..++.|+.|++..+... .+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~-----~~~~~~~ 160 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLIS-----DISGLES 160 (414)
T ss_pred cccccccceeeeeccccc-hhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcch-----hccCCcc
Confidence 347889999999999976 8888766899999999999998 566553 3556666777766544333 2333333
Q ss_pred CccCCCeeecC
Q 039822 465 LNLLRACSIYG 475 (711)
Q Consensus 465 l~~L~~L~i~~ 475 (711)
+..|+.+++.+
T Consensus 161 l~~L~~l~l~~ 171 (414)
T KOG0531|consen 161 LKSLKLLDLSY 171 (414)
T ss_pred chhhhcccCCc
Confidence 55555555544
No 106
>PF14516 AAA_35: AAA-like domain
Probab=96.85 E-value=0.063 Score=55.29 Aligned_cols=170 Identities=13% Similarity=0.101 Sum_probs=94.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-----CCCHHHHHHHHHHHhc----CCCCCh-------hhHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-----PFDEFRIARSIIEALT----GSAPDV-------AEFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~----~~~~~~-------~~~~~~~~~~~ 64 (711)
.+|||+|..++.+ .....=..+++++... ..+....++.++..+. ....-. .........+.
T Consensus 41 q~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~ 118 (331)
T PF14516_consen 41 QMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFE 118 (331)
T ss_pred cCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHH
Confidence 3799999999987 3332223456777543 1245555655555443 222101 11112223333
Q ss_pred HHc---CCceEEEEEeCCCCCCc--cCchhhHhhhccC----C----CCCEEEEEecch--hhh-hh----hCCcCeEEC
Q 039822 65 EFV---EGEKFLLVLDDVWNEDY--CKWEPFYYCLKNC----L----YGSKILITTRKE--TVA-CI----MGSTDVISV 124 (711)
Q Consensus 65 ~~l---~~~r~LlvlDdv~~~~~--~~~~~~~~~l~~~----~----~~s~iivTtR~~--~~~-~~----~~~~~~~~l 124 (711)
+.+ ..++.+|++|+|+.--. ...+.|...++.. . ...-.+|...+. .+. +. ......+++
T Consensus 119 ~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 119 EYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIEL 198 (331)
T ss_pred HHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeC
Confidence 332 25799999999943221 1122344433211 0 111122222211 111 11 123458999
Q ss_pred CCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 039822 125 NVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSK 180 (711)
Q Consensus 125 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 180 (711)
++++.+|...|..+....-+ + .....|...++|+|.-+..++..+..+
T Consensus 199 ~~Ft~~ev~~L~~~~~~~~~-----~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLEFS-----Q---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCHHHHHHHHHhhhccCC-----H---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999877642211 1 127889999999999999999999664
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0099 Score=65.01 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=65.5
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.+...+........+|++|.+. .+. +.......+++++++.++..+.+.+.+...+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567799999996665555666777776655566677666443 222 11122358889999999998888766543332
Q ss_pred cchhhhHHHHHHHHHHhcCCChH-HHHHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL-AAKTIASL 176 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a~~ 176 (711)
.. -...+..|++.++|.+- |+..+-.+
T Consensus 197 ~~----~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 197 PF----DATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 12345678888999774 44444333
No 108
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.016 Score=59.84 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+....+.+...+........+|++| +...+.... ..-..+++.+++.++..+.+.......+
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--
Confidence 566799999997777666677777766544445544444 443333222 2246999999999999999987432111
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
. . .+.+..+++.++|.|.....+
T Consensus 218 ~-~---~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 S-D---GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 233567899999999755443
No 109
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.84 E-value=0.00055 Score=76.63 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=89.9
Q ss_pred ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEecc
Q 039822 466 NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKY 545 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 545 (711)
++|+.|++.+.... ........-..+|+|++|.+.+-.+.. +++.....++|+|.+|+++++
T Consensus 122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~----------------~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDN----------------DDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecc----------------hhHHHHhhccCccceeecCCC
Confidence 44666666653222 123333444557788888776653222 224555667788888888888
Q ss_pred CCCCCCcCcchhhcCcCccEEeEeCCCCCC---CCCCCCCCCCCCeeeecccccceEe--ccccccCCCCCCCCcccCCC
Q 039822 546 RGRRNVVPRNWVMSLTNLRALVLKNCRNCE---HLPPLGKLPSLEDLEVCRMESVKRV--GHEFLGVESDTDGSSVIAFP 620 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~---~l~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~ 620 (711)
+... -.++..+++|+.|.+.+.. .+ .+-.+..+.+|+.|+++.-...... .....+. -..+|
T Consensus 184 nI~n----l~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec--------~~~Lp 250 (699)
T KOG3665|consen 184 NISN----LSGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC--------GMVLP 250 (699)
T ss_pred CccC----cHHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh--------cccCc
Confidence 7766 3667788888888887763 22 2334667788888888765433222 1111111 22577
Q ss_pred ccceeecccCcccccccccCccccccccCCcccEEeecCCCC
Q 039822 621 KLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRK 662 (711)
Q Consensus 621 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 662 (711)
.|+.|+.++ ..+..-.. ..-+..-|+|+.+.+.+|..
T Consensus 251 eLrfLDcSg-Tdi~~~~l----e~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 251 ELRFLDCSG-TDINEEIL----EELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred cccEEecCC-cchhHHHH----HHHHHhCccHhhhhhhhhhc
Confidence 888888875 22221111 11123456666666555443
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0065 Score=64.26 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=63.8
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++..-+...++.++..+........+|.+|.. ..+...+ ..-+.+.+.+++.++..+.+.+.+...+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999776666777777666554445555555544 3443222 23467999999999998888777544333
Q ss_pred cchhhhHHHHHHHHHHhcCCChH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
... .+....|++.++|.+-
T Consensus 199 ~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 199 QYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred CCC----HHHHHHHHHHcCChHH
Confidence 211 3346778999999883
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.83 E-value=0.0097 Score=57.17 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=79.8
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||.|..++++ +.....+ .++|++. .++...+...+.... ...+.+.+++ -=+|++||
T Consensus 44 G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~---------~~~~~~~~~~-~DlL~iDD 105 (219)
T PF00308_consen 44 GLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFADALRDGE---------IEEFKDRLRS-ADLLIIDD 105 (219)
T ss_dssp TSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHHHHHHTTS---------HHHHHHHHCT-SSEEEEET
T ss_pred CCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHHHHHHccc---------chhhhhhhhc-CCEEEEec
Confidence 8899999999988 4544332 3556643 244444555543311 1223344443 34788999
Q ss_pred CCCCCc-cCchh-hHhhhccC-CCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDY-CKWEP-FYYCLKNC-LYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~-~~~~~-~~~~l~~~-~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+..-.. ..|.. +...+... ..|.+||+|++.. +....+...-.+++++.++++-.+++.+++...+-.
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 944221 11211 11111111 2367899999643 233334456789999999999999999988654443
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.+ .+++.-|++.+.+..-.+..+
T Consensus 186 l~----~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 186 LP----EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp S-----HHHHHHHHHHTTSSHHHHHHH
T ss_pred Cc----HHHHHHHHHhhcCCHHHHHHH
Confidence 21 344555666665555444433
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.014 Score=64.07 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.+...+........+|++|.. ..+... ......+++++++.++....+...+...+.
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356679999999666555667777776554445566665554 344322 223458899999999999888876544332
Q ss_pred cchhhhHHHHHHHHHHhcCCCh-HHHHHHHHHh
Q 039822 146 MEERENLEKIGREIIRKCKGLP-LAAKTIASLL 177 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~P-lai~~~a~~l 177 (711)
... .+.+..|++..+|.. .|+..+...+
T Consensus 197 ~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 234677888888865 6777766544
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.014 Score=62.24 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=70.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+|+..+++ .....-..+++++.. .+...+...+... . ...+++.++. .-++++||+.
T Consensus 151 G~GKTHLl~Ai~~--~l~~~~~~v~yi~~~------~f~~~~~~~l~~~-----~----~~~f~~~~~~-~dvLiIDDiq 212 (445)
T PRK12422 151 GSGKTHLMQAAVH--ALRESGGKILYVRSE------LFTEHLVSAIRSG-----E----MQRFRQFYRN-VDALFIEDIE 212 (445)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCEEEeeHH------HHHHHHHHHHhcc-----h----HHHHHHHccc-CCEEEEcchh
Confidence 8999999999998 444433456666532 3333444444211 1 1223333433 3478889984
Q ss_pred CCCccCc--hhhHhhhccC-CCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCC
Q 039822 81 NEDYCKW--EPFYYCLKNC-LYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGN 144 (711)
Q Consensus 81 ~~~~~~~--~~~~~~l~~~-~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 144 (711)
......+ ..+...+... ..|..||+||... ++...+.....+.+++++.++-.+++.+++...+
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 3221111 1222222111 1356788888542 2222233456889999999999999988875443
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.77 E-value=0.00014 Score=77.85 Aligned_cols=103 Identities=27% Similarity=0.290 Sum_probs=63.7
Q ss_pred cccchhhhccCccCCcCc--------cccccccCCcEEecCCCCCCccCCcc-ccCCccCceeccCCCCccccccccCCC
Q 039822 367 EVLPQLFDKLTCLRALKL--------KTLCELYNLQRLDVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSVGIGE 437 (711)
Q Consensus 367 ~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~ 437 (711)
..+..++.-++.|+.||| ..+-.|++|++|||+.|. ++.+|.- ...+. |+.|.+++| .+..+ .+|.+
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~ 252 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIEN 252 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhh-hhHHh
Confidence 334555666777777777 345567777888888765 7777752 23344 777777776 44444 35677
Q ss_pred ccccCccCeeEecccCCCCcCcchhhcCccCCCeeecC
Q 039822 438 LIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYG 475 (711)
Q Consensus 438 l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 475 (711)
|.+|+.|++.++-... -..+..|..|..|+.|.+.+
T Consensus 253 LksL~~LDlsyNll~~--hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSE--HSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhhhhccchhHhhhhc--chhhhHHHHHHHHHHHhhcC
Confidence 7777777766543332 23445555566666666665
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.75 E-value=0.003 Score=64.86 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=50.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCC---hh--h-HHHHHHHHHHH-cCCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP--FDEFRIARSIIEALTGSAPD---VA--E-FQSLMQHIQEF-VEGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~---~~--~-~~~~~~~~~~~-l~~~r 71 (711)
|+|||||++.+++... .++|+..+||.+... .++.++++.++..+-...-+ .. . .....+...+. -.+++
T Consensus 178 g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gkd 256 (415)
T TIGR00767 178 KAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 256 (415)
T ss_pred CCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999998422 336998899987744 68999999995543222111 11 1 11222222222 25889
Q ss_pred EEEEEeCC
Q 039822 72 FLLVLDDV 79 (711)
Q Consensus 72 ~LlvlDdv 79 (711)
++|++|.+
T Consensus 257 VVLlIDEi 264 (415)
T TIGR00767 257 VVILLDSI 264 (415)
T ss_pred eEEEEECh
Confidence 99999998
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.018 Score=62.72 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=63.9
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
++-++|+|++...+...+..+...+........+|++| ....+.. .......+++.+++.++....+...+...+...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44469999996655556666776666544455565555 4334432 223356899999999999988887664333211
Q ss_pred hhhhHHHHHHHHHHhcCCChH-HHHHHHH
Q 039822 148 ERENLEKIGREIIRKCKGLPL-AAKTIAS 175 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Pl-ai~~~a~ 175 (711)
. .+.+..+++.++|.+- |+..+-.
T Consensus 199 s----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 E----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 2346778889999664 4444443
No 117
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.74 E-value=0.018 Score=56.67 Aligned_cols=165 Identities=17% Similarity=0.110 Sum_probs=98.5
Q ss_pred CccHHHHHHHHhcChhhhccCC------ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCC-ceEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE------KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEG-EKFL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~r~L 73 (711)
|+|||++++++++. ....++ .|+.|.....++...++..|+.+++......+..........+.++. +--+
T Consensus 71 nnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrm 148 (302)
T PF05621_consen 71 NNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRM 148 (302)
T ss_pred CCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 68999999999973 222221 47788888999999999999999986654444445555555555553 3458
Q ss_pred EEEeCCCCC------CccCchhhHhhhccCCCCCEEEEEecchhhhhhh-----CCcCeEECCCCChh-hHHHHHHHHh-
Q 039822 74 LVLDDVWNE------DYCKWEPFYYCLKNCLYGSKILITTRKETVACIM-----GSTDVISVNVLSEM-ECWSVFESLA- 140 (711)
Q Consensus 74 lvlDdv~~~------~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~~- 140 (711)
||+|.+-+. .+.+.-.....+-+...-+-|.+-|++..-+-.. ....++.++....+ |...|+....
T Consensus 149 LIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 149 LIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred EEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHH
Confidence 889998221 1112222222333333456677777654333211 12457777777644 4555554332
Q ss_pred -cCCCCcchhhhHHHHHHHHHHhcCCChH
Q 039822 141 -FFGNSMEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 141 -~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
..-..+. +-...+++..|.+.++|..=
T Consensus 229 ~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 229 ALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred hCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 1111111 12346789999999999863
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.73 E-value=0.022 Score=58.70 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=60.4
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
.+-++++|++..-.......+...+......+++|+++... .+.. .......+++++++.++....+...+...+...
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46689999985443333445555555545567777777432 2221 112234789999999999888887765433322
Q ss_pred hhhhHHHHHHHHHHhcCCChHHH
Q 039822 148 ERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Plai 170 (711)
. .+.+..+++.++|.+--+
T Consensus 182 ~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 T----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred C----HHHHHHHHHHcCCCHHHH
Confidence 1 334677888999987553
No 119
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.72 E-value=0.00029 Score=75.38 Aligned_cols=204 Identities=25% Similarity=0.252 Sum_probs=119.8
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cc-cccccCCcEEecCCCCCCccCCccccCCccCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KT-LCELYNLQRLDVTYCKNLEELPPGIGKLRKLM 418 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 418 (711)
.+..+..+.+..|.. ...-..++.+.+|.+|++ .. +..+++|++|++++|. |+.+.. +..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i----~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI----AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhh----hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchh
Confidence 455666666665422 222334677888999998 45 7779999999999976 888854 88999999
Q ss_pred eeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcch--hhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCC
Q 039822 419 YLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLES--LKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYL 496 (711)
Q Consensus 419 ~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~--L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L 496 (711)
.|++.+| .+..++ ++..++.|+.+++.++.... +.. +..+..++.+.+.+..... ...+..+..+
T Consensus 144 ~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l 210 (414)
T KOG0531|consen 144 ELNLSGN-LISDIS-GLESLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSIRE------IEGLDLLKKL 210 (414)
T ss_pred hheeccC-cchhcc-CCccchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCchhc------ccchHHHHHH
Confidence 9999999 566554 45557777777765554433 223 4666666666666422111 1111122222
Q ss_pred ceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCC--CccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCC
Q 039822 497 FYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPP--NLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNC 574 (711)
Q Consensus 497 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 574 (711)
..+++..+.+... ..+..+. +|+.+++.++.... . +..+..+.++..|++.+. .+
T Consensus 211 ~~~~l~~n~i~~~-------------------~~l~~~~~~~L~~l~l~~n~i~~--~-~~~~~~~~~l~~l~~~~n-~~ 267 (414)
T KOG0531|consen 211 VLLSLLDNKISKL-------------------EGLNELVMLHLRELYLSGNRISR--S-PEGLENLKNLPVLDLSSN-RI 267 (414)
T ss_pred HHhhcccccceec-------------------cCcccchhHHHHHHhcccCcccc--c-cccccccccccccchhhc-cc
Confidence 2223333321111 1111122 37788888877766 3 255667777788887766 34
Q ss_pred CCCCCCCCCCCCCeeeecc
Q 039822 575 EHLPPLGKLPSLEDLEVCR 593 (711)
Q Consensus 575 ~~l~~~~~l~~L~~L~l~~ 593 (711)
..+..+...+.+..+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 268 SNLEGLERLPKLSELWLND 286 (414)
T ss_pred cccccccccchHHHhccCc
Confidence 4444444444444444443
No 120
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.71 E-value=0.0096 Score=67.21 Aligned_cols=93 Identities=13% Similarity=0.236 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh----hhhh-hCCcCeEECCCCChhhHHHHHHHHhcC-
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET----VACI-MGSTDVISVNVLSEMECWSVFESLAFF- 142 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~----~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~- 142 (711)
+++.++|||+++.-+....+.+...+. .++.++|++.... +... ......+++++++.++...++.+....
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 467899999996544444444444333 2555555433221 1111 122457999999999999999876531
Q ss_pred -----CCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 143 -----GNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 143 -----~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
......+ .+....|++.+.|.-
T Consensus 185 ~~~~g~~~v~I~---deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLE---PEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCC---HHHHHHHHHhCCCCH
Confidence 1111111 234566777787764
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.68 E-value=0.022 Score=60.78 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=81.9
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+|+.++++ +...... .++|++.. .+...+...+.... .+ .+.+.+++ .-+|||||
T Consensus 146 G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~-~dlLiiDD 207 (405)
T TIGR00362 146 GLGKTHLLHAIGN--EILENNPNAKVVYVSSE------KFTNDFVNALRNNK-----ME----EFKEKYRS-VDLLLIDD 207 (405)
T ss_pred CCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH------HHHHHHHHHHHcCC-----HH----HHHHHHHh-CCEEEEeh
Confidence 8999999999998 5544442 45566432 33344444443211 11 22233332 33788999
Q ss_pred CCCCCccCc--hhhHhhhccC-CCCCEEEEEecch-h--------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDYCKW--EPFYYCLKNC-LYGSKILITTRKE-T--------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~~~~--~~~~~~l~~~-~~~s~iivTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+......++ ..+...+... ..+..||+|+... . +...+.....+.+++.+.++-..++.+.+...+..
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~ 287 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLE 287 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 953221111 1222222211 1355688888642 1 11222334578999999999999998887554332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAK 171 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~ 171 (711)
.. .+...-|++.+.|..-.+.
T Consensus 288 l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 288 LP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CC----HHHHHHHHHhcCCCHHHHH
Confidence 22 3446667777777665443
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.021 Score=63.07 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec-chhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR-KETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR-~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+....+.+...+..-...+++|++|. ...+...+ .....+++..++.++....+.+.+...+..
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4556799999966555556677777766555677766553 33333222 234688999999999999998776433322
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKT 172 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~ 172 (711)
.. .+.+..|++.++|.+.-+..
T Consensus 211 i~----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 211 VE----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHH
Confidence 21 24467788899998754433
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.64 E-value=0.029 Score=62.63 Aligned_cols=84 Identities=12% Similarity=-0.008 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEE--Eecchhh-hhhh-CCcCeEECCCCChhhHH
Q 039822 58 SLMQHIQEFVEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILI--TTRKETV-ACIM-GSTDVISVNVLSEMECW 133 (711)
Q Consensus 58 ~~~~~~~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iiv--TtR~~~~-~~~~-~~~~~~~l~~L~~~ea~ 133 (711)
..+..+.+.++.+++.++-|+.|..+...|..+...+....+...|++ ||++... .... .....+.+.+++.+|.+
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 346677788888888888777777666677777665555555545555 5664432 1111 12246788999999999
Q ss_pred HHHHHHhc
Q 039822 134 SVFESLAF 141 (711)
Q Consensus 134 ~Lf~~~~~ 141 (711)
.++.+.+.
T Consensus 360 ~Il~~~a~ 367 (615)
T TIGR02903 360 LIVLNAAE 367 (615)
T ss_pred HHHHHHHH
Confidence 99988764
No 124
>PRK08116 hypothetical protein; Validated
Probab=96.60 E-value=0.0089 Score=59.32 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=52.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||.++++ .....-..++|+++ .+++..+......... .....+.+.+.+-. ||||||+.
T Consensus 124 GtGKThLa~aia~--~l~~~~~~v~~~~~------~~ll~~i~~~~~~~~~------~~~~~~~~~l~~~d-lLviDDlg 188 (268)
T PRK08116 124 GTGKTYLAACIAN--ELIEKGVPVIFVNF------PQLLNRIKSTYKSSGK------EDENEIIRSLVNAD-LLILDDLG 188 (268)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEEH------HHHHHHHHHHHhcccc------ccHHHHHHHhcCCC-EEEEeccc
Confidence 8999999999999 55444445677753 3344444444332110 11122334455444 89999995
Q ss_pred CCCccCchh--hHhhhcc-CCCCCEEEEEecch
Q 039822 81 NEDYCKWEP--FYYCLKN-CLYGSKILITTRKE 110 (711)
Q Consensus 81 ~~~~~~~~~--~~~~l~~-~~~~s~iivTtR~~ 110 (711)
.....+|.. +...+.. ...+..+||||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 443444544 2222221 12456799999643
No 125
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=5.6e-05 Score=80.68 Aligned_cols=18 Identities=33% Similarity=0.288 Sum_probs=13.9
Q ss_pred CccccCCccCceeccCCC
Q 039822 408 PPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 408 P~~i~~L~~L~~L~l~~~ 425 (711)
|-.|....+||+|.+++|
T Consensus 102 pi~ifpF~sLr~LElrg~ 119 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGC 119 (1096)
T ss_pred CceeccccceeeEEecCc
Confidence 556777778888888887
No 126
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.58 E-value=0.053 Score=51.61 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=95.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE-eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----Hc-CCce-EE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC-VSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE----FV-EGEK-FL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~----~l-~~~r-~L 73 (711)
|.|||.+++.+.. ...+. .++-|. ..+..+...+...|...+..+. ..........+.+ .. +++| ..
T Consensus 61 GsGKTv~~Ral~~--s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~al~~~g~r~v~ 134 (269)
T COG3267 61 GSGKTVLRRALLA--SLNED--QVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELAALVKKGKRPVV 134 (269)
T ss_pred CCchhHHHHHHHH--hcCCC--ceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHHHHHHhCCCCeE
Confidence 8999999995443 22211 222233 3455677888888888887633 2233333333333 22 4667 99
Q ss_pred EEEeCCCCCCccCchhhHhhhccCC---CCCEEEEEecch-------hhhhhhC-CcCe-EECCCCChhhHHHHHHHHhc
Q 039822 74 LVLDDVWNEDYCKWEPFYYCLKNCL---YGSKILITTRKE-------TVACIMG-STDV-ISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 74 lvlDdv~~~~~~~~~~~~~~l~~~~---~~s~iivTtR~~-------~~~~~~~-~~~~-~~l~~L~~~ea~~Lf~~~~~ 141 (711)
+++|+..+-.....+.++-...... ..-+|+..-.-+ .+....+ ...+ |++.|++.++....++.+..
T Consensus 135 l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le 214 (269)
T COG3267 135 LMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLE 214 (269)
T ss_pred EeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHh
Confidence 9999986655555555544322111 112344433211 1111111 1224 89999999988877777655
Q ss_pred CCCCcchhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 142 FGNSMEERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
+...+.+-.. .+....|.+..+|.|.+|+.++
T Consensus 215 ~a~~~~~l~~-~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 215 GAGLPEPLFS-DDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred ccCCCcccCC-hhHHHHHHHHhccchHHHHHHH
Confidence 4433221111 3456778899999999999887
No 127
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.56 E-value=0.03 Score=59.95 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=82.6
Q ss_pred CccHHHHHHHHhcChhhhccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-E-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+||..+++ ...... . .++|++.. ++...+...+.... . ..+.+..+.+.-+|++||
T Consensus 140 G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~~-----~----~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 140 GLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK-----L----NEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CCcHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHhccc-----H----HHHHHHHHhcCCEEEEec
Confidence 8999999999998 554443 2 46677542 34555555443211 1 122333333455899999
Q ss_pred CCCCCc-cCc-hhhHhhhcc-CCCCCEEEEEec-chh--------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDY-CKW-EPFYYCLKN-CLYGSKILITTR-KET--------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~-~~~-~~~~~~l~~-~~~~s~iivTtR-~~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+..-.. ..+ ..+...+.. ...+..||+||. ... +...+.....+.+++.+.++-.+++.+.+...+..
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~ 282 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE 282 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 953210 111 122222211 112457888885 221 11222345688999999999999998887543332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
.+ .+.+.-|++.+.|.--.+
T Consensus 283 l~----~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 283 LP----EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred CC----HHHHHHHHhccccCHHHH
Confidence 21 344666777776654333
No 128
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.54 E-value=0.017 Score=57.30 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=75.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||||+.+....+... ..||..+.......-.+.|.++-.. ...+.++|.+|++|.|-
T Consensus 172 G~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 172 GTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTKRKTILFIDEIH 232 (554)
T ss_pred CCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhcceeEEEeHHhh
Confidence 8999999999998432222 5688887766555555555444321 12356789999999995
Q ss_pred CCCccCchhhHhhhccCCCCCEEEE--Eecchhhh---hhhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 81 NEDYCKWEPFYYCLKNCLYGSKILI--TTRKETVA---CIMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~s~iiv--TtR~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
.-+..+-+.| +|.--+|.-++| ||-+.... .....-.++.++.|+.++-..++.+..
T Consensus 233 RFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 233 RFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 5444444444 444445776666 44443322 122334688999999999999998743
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.055 Score=58.52 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=62.7
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.+...+........+|++| +...+... ......+.+.+++.++....+...+...+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567799999996554445566666665544455555555 43333322 223468899999999988888776544332
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
... .+.+..|++.++|.+..+...
T Consensus 197 ~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 197 EYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 211 234566888888876544433
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.032 Score=61.81 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.+...+..-...+.+|++| +...+.. .......++..+++.++....+.+.+...+.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 3456678999996665556667777776655556655554 4444443 2334678999999999988888766543222
Q ss_pred cchhhhHHHHHHHHHHhcCCChH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
... .+.+..|++.++|..-
T Consensus 205 ~I~----~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QID----ADALQLIARKAQGSMR 223 (620)
T ss_pred CCC----HHHHHHHHHHhCCCHH
Confidence 111 3346778899998554
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=96.51 E-value=0.046 Score=54.85 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=42.7
Q ss_pred EEEEEeCCCCC---------CccCchhhHhhhccCCCCCEEEEEecchhhhhhhC--------CcCeEECCCCChhhHHH
Q 039822 72 FLLVLDDVWNE---------DYCKWEPFYYCLKNCLYGSKILITTRKETVACIMG--------STDVISVNVLSEMECWS 134 (711)
Q Consensus 72 ~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~--------~~~~~~l~~L~~~ea~~ 134 (711)
-+|++|++..- ..+..+.+...+.....+.+||.++....+..... -...+..++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999998431 01112222333444444567777776544432211 13578999999999999
Q ss_pred HHHHHhcC
Q 039822 135 VFESLAFF 142 (711)
Q Consensus 135 Lf~~~~~~ 142 (711)
++...+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 99887644
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.50 E-value=0.022 Score=60.06 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=50.1
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhh-----hhh-CCcCeEECCCCChhhHHHHH
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVA-----CIM-GSTDVISVNVLSEMECWSVF 136 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~-----~~~-~~~~~~~l~~L~~~ea~~Lf 136 (711)
++.+|+||.| .....|......+.+.++. +|++|+.+..+. +.. +....+.+.|||..|...+-
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 7899999999 5567899999988887766 899998876433 222 34678999999999987764
No 133
>PRK06620 hypothetical protein; Validated
Probab=96.49 E-value=0.022 Score=54.40 Aligned_cols=90 Identities=9% Similarity=-0.021 Sum_probs=49.7
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCC
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-------VACIMGSTDVISVNVLSEMECWSVFESLAFFGN 144 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 144 (711)
-++++||+..-+......+...+. ..|..||+|++..- ....+....+++++++++++-.+++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899994221111111111122 23668999998532 223334456899999999998888877654322
Q ss_pred CcchhhhHHHHHHHHHHhcCCCh
Q 039822 145 SMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 145 ~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
- ..+ .+...-|++.+.|--
T Consensus 165 l-~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 165 V-TIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred C-CCC---HHHHHHHHHHccCCH
Confidence 1 111 234455666555543
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.035 Score=63.71 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|||++...+....+.++..+..-...+.+|++|.+ ..+...+ .....|++..++.++..+.+.+.....+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 355667889999777777777788887766666666666644 3344322 33578999999999988888776433222
Q ss_pred cchhhhHHHHHHHHHHhcCCChH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
.. -......|++.++|.+.
T Consensus 198 ~i----d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 198 PV----EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CC----CHHHHHHHHHHcCCCHH
Confidence 11 12345678888999773
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.45 E-value=0.0031 Score=42.76 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=14.5
Q ss_pred CccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCC
Q 039822 536 NLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNC 571 (711)
Q Consensus 536 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 571 (711)
+|+.|+++++.+.. + +..+..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~--l-~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--L-PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--H-GGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--c-CchHhCCCCCCEEEecCC
Confidence 44555555554444 3 333444455555555444
No 136
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.055 Score=56.90 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec-chhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR-KETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++.......+..+...+........+|++|. ...+... ......++.++++.++....+...+...+..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 4556899999855444445566655544334455665553 3333322 2234578999999999988888776543332
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
.. .+.+..+++.++|.+-
T Consensus 187 i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FE----DDALHIIAQKADGALR 204 (367)
T ss_pred CC----HHHHHHHHHhCCCCHH
Confidence 11 2456778888888665
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.40 E-value=0.045 Score=54.93 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCC---------CccCchhhHhhhccCCCCCEEEEEecchhhhhhh--C------CcCeEECCCCChhhHH
Q 039822 71 KFLLVLDDVWNE---------DYCKWEPFYYCLKNCLYGSKILITTRKETVACIM--G------STDVISVNVLSEMECW 133 (711)
Q Consensus 71 r~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~--~------~~~~~~l~~L~~~ea~ 133 (711)
.-+|+||++..- ..+....+...+.....+.+||.++......... . -...+.+++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368899998421 0112233344444444456777776543332211 1 1357899999999999
Q ss_pred HHHHHHhc
Q 039822 134 SVFESLAF 141 (711)
Q Consensus 134 ~Lf~~~~~ 141 (711)
+++...+.
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99987763
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.047 Score=60.88 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-+....+.+...+......+.+|+++.+ ..+.... .....++++.++..+....+.+.+...+..
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999655545566676666655556666666644 3333222 234678899999999888887776443321
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.. .+.+..|++.++|.+..+...
T Consensus 199 i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 LE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 11 245678899999988654443
No 139
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.058 Score=59.37 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec-chhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR-KETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+....+.++..+........+|++|. ...+... ......++..+++.++..+.+.+.+...+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4566889999966666667777777776555666665554 3444422 2335789999999999888887765433321
Q ss_pred chhhhHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 039822 147 EERENLEKIGREIIRKCKGLPL-AAKTIASLL 177 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a~~l 177 (711)
.. .+.+..|++..+|.+- |+..+-..+
T Consensus 197 i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 197 VD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 2345678888888773 555554433
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.073 Score=57.70 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+.+..+.++..+......+++|++|.+. .+.. .......+++.+++.++....+...+...+..
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456788999997666666677777776655667777777653 2222 12235689999999999988887765443332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.. .+.+..|++.++|.+.-+...
T Consensus 196 i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 196 YE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CC----HHHHHHHHHHcCCcHHHHHHH
Confidence 21 345678899999988444333
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.077 Score=59.19 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=63.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++...+...++.+...+..-.....+|++|.+ ..+... ......++...++.++....+.+.+...+..
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45668899999666656677777777654445555555544 333322 2234678888999988888777665432221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.. .+.+..|++.++|.+..+...
T Consensus 200 is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 IE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 11 234678889999987544433
No 142
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0086 Score=54.50 Aligned_cols=111 Identities=22% Similarity=0.333 Sum_probs=77.8
Q ss_pred cCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDY 638 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 638 (711)
...+...++++++ .+..++.+..++.|..|.+.++. +..+...... -+|+|+.|.+.+ ++++++.-
T Consensus 40 ~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~-----------~~p~l~~L~Ltn-Nsi~~l~d 105 (233)
T KOG1644|consen 40 TLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDT-----------FLPNLKTLILTN-NSIQELGD 105 (233)
T ss_pred cccccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhh-----------hccccceEEecC-cchhhhhh
Confidence 3556778888888 66777778888899999998776 7777665432 478899999987 44444321
Q ss_pred cCccccccccCCcccEEeecCCCCCcCCCc----CCCCCCCccEEEEecCcchh
Q 039822 639 GTAIKGEIIIMPRLSFLEIGGCRKLKALPD----HLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 639 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~l~~c~~l~ 688 (711)
- .-+..+|+|+.|.+.+. .++.-.. .+..+++|+.||..+-..=+
T Consensus 106 l----~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 106 L----DPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred c----chhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 1 11458899999999984 4554443 24458899999988776544
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.048 Score=58.54 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++........+.+...+........+|++|.. ..+... ......+++++++.++....+.+.+...+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778999998555444555666666655456667666643 333322 2335689999999999988887765433221
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
. -.+.+..|++.++|.+-
T Consensus 200 i----~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 T----SREALLPIARAAQGSLR 217 (451)
T ss_pred C----CHHHHHHHHHHcCCCHH
Confidence 1 13446778888888664
No 144
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.22 E-value=0.0039 Score=59.15 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=26.8
Q ss_pred cccccccCCcEEecCCCCCCccCCcc----ccCCccCceeccCCC
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPG----IGKLRKLMYLDNRWT 425 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~----i~~L~~L~~L~l~~~ 425 (711)
+.+-++++|+..+||+|---.+.|+. +++-+.|.||.|++|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 45567788888888876533344433 455667778877777
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.095 Score=57.40 Aligned_cols=145 Identities=10% Similarity=0.087 Sum_probs=79.5
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||.|+..+++ .....+ ..++|++.. ++...+...+... ....+++.++. -=+|||||
T Consensus 324 GsGKTHLL~AIa~--~a~~~~~g~~V~Yitae------ef~~el~~al~~~---------~~~~f~~~y~~-~DLLlIDD 385 (617)
T PRK14086 324 GLGKTHLLHAIGH--YARRLYPGTRVRYVSSE------EFTNEFINSIRDG---------KGDSFRRRYRE-MDILLVDD 385 (617)
T ss_pred CCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc---------cHHHHHHHhhc-CCEEEEeh
Confidence 8999999999998 444433 245666543 2333333333211 11123333333 24788899
Q ss_pred CCCCCc-cCch-hhHhhhccC-CCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDY-CKWE-PFYYCLKNC-LYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~-~~~~-~~~~~l~~~-~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+.-... +.|. .+...+... ..+..|||||+.. ++...+.....+.++..+.+.-.+++.+++...+-.
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~ 465 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLN 465 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 943321 1121 222222211 2356799988752 233334456789999999999999999887554332
Q ss_pred chhhhHHHHHHHHHHhcCCCh
Q 039822 147 EERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~P 167 (711)
.. .+++.-|++.+.+..
T Consensus 466 l~----~eVi~yLa~r~~rnv 482 (617)
T PRK14086 466 AP----PEVLEFIASRISRNI 482 (617)
T ss_pred CC----HHHHHHHHHhccCCH
Confidence 22 233444555554443
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.0017 Score=62.38 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=9.8
Q ss_pred hcCcCccEEeEeCCCCCC
Q 039822 558 MSLTNLRALVLKNCRNCE 575 (711)
Q Consensus 558 ~~l~~L~~L~l~~~~~l~ 575 (711)
..|++|..|.+++..-+.
T Consensus 246 n~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cCCchhheeeccCCcccc
Confidence 355666666666554333
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.20 E-value=0.025 Score=61.16 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=83.1
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+|+..+++ +....+. .++|++... +...+...+.... ...+.+.+++ .-+|||||
T Consensus 158 G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-~dlLiiDD 219 (450)
T PRK00149 158 GLGKTHLLHAIGN--YILEKNPNAKVVYVTSEK------FTNDFVNALRNNT---------MEEFKEKYRS-VDVLLIDD 219 (450)
T ss_pred CCCHHHHHHHHHH--HHHHhCCCCeEEEEEHHH------HHHHHHHHHHcCc---------HHHHHHHHhc-CCEEEEeh
Confidence 8999999999999 5655543 355665432 2233333332111 1222333332 44889999
Q ss_pred CCCCCccC--chhhHhhhcc-CCCCCEEEEEecch--h-------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDYCK--WEPFYYCLKN-CLYGSKILITTRKE--T-------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~~~--~~~~~~~l~~-~~~~s~iivTtR~~--~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+..-.... ...+...+.. ...+..||+||... . +...+.....+++++.+.++-.+++.+.+...+..
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~ 299 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID 299 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 94321111 1122222211 11245688888653 1 22233345689999999999999999887543322
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAK 171 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~ 171 (711)
.. .+...-|++.+.|..-.+.
T Consensus 300 l~----~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 300 LP----DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred CC----HHHHHHHHcCcCCCHHHHH
Confidence 21 2446778888887765443
No 148
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.0095 Score=54.24 Aligned_cols=89 Identities=28% Similarity=0.390 Sum_probs=65.3
Q ss_pred hccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCC--CCCCCCCCCCCCCCCeeeecccccceEec-cccc
Q 039822 529 DALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCR--NCEHLPPLGKLPSLEDLEVCRMESVKRVG-HEFL 605 (711)
Q Consensus 529 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~l~~l~~~~~l~~L~~L~l~~~~~l~~l~-~~~~ 605 (711)
..+..++.|.+|.|..|.+.. +.|..-..+++|..|.+.+++ .+.++..+..+|+|++|.+-+++ .+... -..+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~y 134 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLY 134 (233)
T ss_pred ccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeE
Confidence 356678899999999999888 545555678899999999875 55677778889999999998776 22211 1111
Q ss_pred cCCCCCCCCcccCCCccceeeccc
Q 039822 606 GVESDTDGSSVIAFPKLKHLKFYD 629 (711)
Q Consensus 606 ~~~~~~~~~~~~~~~~L~~L~l~~ 629 (711)
. +..+|+|+.|++.+
T Consensus 135 v---------l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 V---------LYKLPSLRTLDFQK 149 (233)
T ss_pred E---------EEecCcceEeehhh
Confidence 1 44688899998875
No 149
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00022 Score=67.55 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCC
Q 039822 533 PPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTD 612 (711)
Q Consensus 533 ~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 612 (711)
.+.+.++|++.||.... ......++.|+.|.|+-+ ++.++..+..+.+|++|.|..+. +.++.+-++
T Consensus 17 dl~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y------- 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEY------- 83 (388)
T ss_pred HHHHhhhhcccCCCccH----HHHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHH-------
Confidence 45678889999988766 456678999999999988 78888889999999999998765 666655443
Q ss_pred CCcccCCCccceeecccCcccccccccCccccccccCCcccEEee
Q 039822 613 GSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEI 657 (711)
Q Consensus 613 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 657 (711)
+.++|+|+.|+|...|--..-+.. +....+..+|+|+.|+=
T Consensus 84 ---LknlpsLr~LWL~ENPCc~~ag~n-YR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 ---LKNLPSLRTLWLDENPCCGEAGQN-YRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ---HhcCchhhhHhhccCCcccccchh-HHHHHHHHcccchhccC
Confidence 457899999999765432211110 11123567888887763
No 150
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.13 E-value=0.018 Score=50.90 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=41.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCc-eEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGE-KFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-r~LlvlDdv 79 (711)
|+||||+|+.++. ........+++++.+........... ......... ............+..+.. ..++++|++
T Consensus 12 G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 12 GSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred CCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999999998 34333345677765554433322222 111111111 111222222334444433 499999999
Q ss_pred CCCC
Q 039822 80 WNED 83 (711)
Q Consensus 80 ~~~~ 83 (711)
+...
T Consensus 88 ~~~~ 91 (148)
T smart00382 88 TSLL 91 (148)
T ss_pred cccC
Confidence 5543
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.084 Score=59.05 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEE-EEecchhhhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKIL-ITTRKETVAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~ii-vTtR~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++.......+..+...+........+| +|++...+.. .......+++.+++.++....+...+...+..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 566788999996655556667766665544455545 4444444443 23335689999999999998887765433321
Q ss_pred chhhhHHHHHHHHHHhcCCChH-HHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPL-AAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a 174 (711)
.. .+.+..|++.++|.+- |+..+.
T Consensus 197 id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 197 YE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 2346778899988764 444433
No 152
>PRK04132 replication factor C small subunit; Provisional
Probab=96.07 E-value=0.14 Score=58.56 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=92.3
Q ss_pred CccHHHHHHHHhcChhh-hccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDV-KNHFE-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+||||+|..+++ +. .+.++ .++-++++.......+ +.+...+....+. -..+.-++|+|+
T Consensus 576 ~lGKTT~A~ala~--~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvIIDE 638 (846)
T PRK04132 576 VLHNTTAALALAR--ELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIFLDE 638 (846)
T ss_pred cccHHHHHHHHHH--hhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEEEEC
Confidence 5899999999998 33 22332 4566667665555433 3333333211110 012457999999
Q ss_pred CCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHH
Q 039822 79 VWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIG 156 (711)
Q Consensus 79 v~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 156 (711)
+...+....+.++..+......+++|.++.+. .+.... .....+++++++.++....+.+.+...+.... .+..
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~L 714 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGL 714 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHHH
Confidence 97776666667776666544566777766654 333222 23578999999999988888766543222111 3356
Q ss_pred HHHHHhcCCChHHH
Q 039822 157 REIIRKCKGLPLAA 170 (711)
Q Consensus 157 ~~i~~~~~g~Plai 170 (711)
..|++.++|.+...
T Consensus 715 ~~Ia~~s~GDlR~A 728 (846)
T PRK04132 715 QAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHcCCCHHHH
Confidence 78999999988443
No 153
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.073 Score=53.95 Aligned_cols=96 Identities=10% Similarity=0.138 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++..+...-+.++.-+..-..++.+|++|... .+...+ ..-..+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 556789999997777666777777676655677777777653 444332 335688999999999998886531 10
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
...+..++..++|.|+....+.
T Consensus 188 ------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225678999999997654443
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.97 E-value=0.017 Score=50.43 Aligned_cols=13 Identities=54% Similarity=0.636 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 8 G~GKT~l~~~la~ 20 (132)
T PF00004_consen 8 GTGKTTLARALAQ 20 (132)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCeeHHHHHHHh
Confidence 8999999999998
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.12 Score=57.62 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-+...++.+...+..-...+.+|++| +...+... -.....++.++++.++....+.+.+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 456688999997666666777887777655566666555 44444433 2335789999999999998888765443321
Q ss_pred chhhhHHHHHHHHHHhcCCChHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
.. .+.+..|++.++|..--
T Consensus 200 i~----~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 200 AE----PEALNVIAQKADGGMRD 218 (614)
T ss_pred CC----HHHHHHHHHHcCCCHHH
Confidence 11 23467788899886643
No 156
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.89 E-value=0.045 Score=51.52 Aligned_cols=72 Identities=24% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEEEEecchhhhhhhCCc--CeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 102 KILITTRKETVACIMGST--DVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 102 ~iivTtR~~~~~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
-|=-|||...+....... -..+++..+.+|-.++..+.+..-+.. -..+.+.+|++.++|-|--..-+-+..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 344566665444333322 245799999999999998876443332 234668999999999995544443333
No 157
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.81 E-value=0.016 Score=55.66 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=22.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCV 29 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~ 29 (711)
|+||||+++.+.. .....|..+++++-
T Consensus 23 GSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 23 GSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 8999999999998 68889987777754
No 158
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.78 E-value=0.063 Score=48.09 Aligned_cols=108 Identities=18% Similarity=0.060 Sum_probs=57.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE---eCCCCCHHHHHHHHHHHh-----cC-----CCCChh---hHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC---VSDPFDEFRIARSIIEAL-----TG-----SAPDVA---EFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l-----~~-----~~~~~~---~~~~~~~~~~ 64 (711)
|.||||.|...+- +-..+=..+.+|- -........+++.+- .+ +. ...... ......+..+
T Consensus 12 G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a~ 88 (159)
T cd00561 12 GKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAAAEGWAFAK 88 (159)
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 8899999988877 4433323444433 222233433333320 00 00 011111 1222333444
Q ss_pred HHcCCc-eEEEEEeCCCC---CCccCchhhHhhhccCCCCCEEEEEecchh
Q 039822 65 EFVEGE-KFLLVLDDVWN---EDYCKWEPFYYCLKNCLYGSKILITTRKET 111 (711)
Q Consensus 65 ~~l~~~-r~LlvlDdv~~---~~~~~~~~~~~~l~~~~~~s~iivTtR~~~ 111 (711)
+.++.. -=|+|||.+-. ....+.+.+...+.....+..+|+|.|+..
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 455444 45999999732 223445566666766677889999999853
No 159
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0037 Score=60.12 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=58.2
Q ss_pred cCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchh-hcCcCccEEeEe
Q 039822 491 EKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWV-MSLTNLRALVLK 569 (711)
Q Consensus 491 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~l~~L~~L~l~ 569 (711)
..++.++.+++.+|.++... .+...+..+|.|+.|+|+.|..... ...+ ....+|+.|-|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWs---------------eI~~ile~lP~l~~LNls~N~L~s~---I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWS---------------EIGAILEQLPALTTLNLSCNSLSSD---IKSLPLPLKNLRVLVLN 129 (418)
T ss_pred HHhhhhhhhhcccchhccHH---------------HHHHHHhcCccceEeeccCCcCCCc---cccCcccccceEEEEEc
Confidence 45567888889888665542 3566777889999999998887652 2223 356788999888
Q ss_pred CCC-CCCCCCC-CCCCCCCCeeeeccc
Q 039822 570 NCR-NCEHLPP-LGKLPSLEDLEVCRM 594 (711)
Q Consensus 570 ~~~-~l~~l~~-~~~l~~L~~L~l~~~ 594 (711)
|.. .++.... +..+|.+++|.++.+
T Consensus 130 gT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 130 GTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCCCChhhhhhhhhcchhhhhhhhccc
Confidence 874 2333332 566777777777654
No 160
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.21 Score=50.83 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++=++|+|+++..+....+.++.-+..-..+..+|++|... .+... ...-..+.+.+++.+++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---A- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---c-
Confidence 566688899998888777888888777666677777777654 44433 23356899999999999988876541 1
Q ss_pred chhhhHHHHHHHHHHhcCCChH
Q 039822 147 EERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
. ...+...+..++|.|.
T Consensus 182 ~-----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 E-----ISEILTALRINYGRPL 198 (325)
T ss_pred C-----hHHHHHHHHHcCCCHH
Confidence 0 1124567788999995
No 161
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.64 E-value=0.29 Score=49.38 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=80.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHH--HcC--C
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVA-------EFQSLMQHIQE--FVE--G 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~~~~--~l~--~ 69 (711)
|.|||.+.+++.+.. =-..+|++.-+.++.+.+...|+.+....+.+.. ...+....+.+ ... +
T Consensus 40 gTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d 114 (438)
T KOG2543|consen 40 GTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRD 114 (438)
T ss_pred CCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccC
Confidence 899999999999832 1246899999999999999999999953222221 12222333333 222 3
Q ss_pred ceEEEEEeCCCCCCccCchhhHhh----hc-cCCCCCEEEEEecchhhhhh---hCCcC--eEECCCCChhhHHHHHHHH
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYC----LK-NCLYGSKILITTRKETVACI---MGSTD--VISVNVLSEMECWSVFESL 139 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~----l~-~~~~~s~iivTtR~~~~~~~---~~~~~--~~~l~~L~~~ea~~Lf~~~ 139 (711)
+.++|||||++ ...+++++.-+ +. --....-.|+++--...... ++... ++..+..+.+|-.+++.+.
T Consensus 115 ~~~~liLDnad--~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 115 QKVFLILDNAD--ALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ceEEEEEcCHH--hhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 58999999994 34455554332 11 11223444555543322221 24333 5556888999999998654
No 162
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.18 Score=55.53 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++..-+...++.+...+........+|++|.+ ..+... ......++.++++.++..+.+.+.+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999666555666777776655556666666644 333322 223457899999999998888776644332
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
... .+.+..|++.++|.+-.+
T Consensus 197 ~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 KYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 211 344667888888877433
No 163
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0047 Score=34.73 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=12.1
Q ss_pred CCcEEecCCCCCCccCCccccC
Q 039822 392 NLQRLDVTYCKNLEELPPGIGK 413 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP~~i~~ 413 (711)
+|++|||++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666663 5566655443
No 164
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.52 E-value=0.072 Score=55.84 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=39.9
Q ss_pred CCCEEEEEecchhhhhh-h----CCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 99 YGSKILITTRKETVACI-M----GSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 99 ~~s~iivTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
.+.+||.||...+..+. + .-...+.++..+.++..++|........... .-. ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 36688888886543321 1 1145789999999999999988764432211 112 345667776654
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.25 Score=51.82 Aligned_cols=118 Identities=22% Similarity=0.187 Sum_probs=73.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||.+++. ...|+.+=-++-....... . ........+......+..=-.||+||+
T Consensus 548 ~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s-------------E--saKc~~i~k~F~DAYkS~lsiivvDdi- 607 (744)
T KOG0741|consen 548 GSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS-------------E--SAKCAHIKKIFEDAYKSPLSIIVVDDI- 607 (744)
T ss_pred CCChHHHHHHHHh----hcCCCeEEEeChHHccCcc-------------H--HHHHHHHHHHHHHhhcCcceEEEEcch-
Confidence 7999999999986 6788876555322211100 0 111222333444556777789999999
Q ss_pred CCCccCchhhHhhh---------------ccCCCCCEEEEEecchhhhhhhCC----cCeEECCCCCh-hhHHHHHHHH
Q 039822 81 NEDYCKWEPFYYCL---------------KNCLYGSKILITTRKETVACIMGS----TDVISVNVLSE-MECWSVFESL 139 (711)
Q Consensus 81 ~~~~~~~~~~~~~l---------------~~~~~~s~iivTtR~~~~~~~~~~----~~~~~l~~L~~-~ea~~Lf~~~ 139 (711)
+..-+|-.+.+.+ |..+..--|+=||....+...|+- ...+.|+.++. ++..+.+...
T Consensus 608 -ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 608 -ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred -hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 5556777765532 222223345557777788877753 45888999887 7777777654
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.23 Score=50.55 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++...+....+.++..+..-. .+.+|++| +...+...+ ...+.+++.+++.++..+.+.+.......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc
Confidence 3567789999997777666777777765544 34455555 444444332 34679999999999999999876421111
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
+ .....++..++|.|.....+
T Consensus 201 -----~--~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 201 -----N--INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred -----h--hHHHHHHHHcCCCHHHHHHH
Confidence 1 01356888999999655443
No 167
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.43 E-value=0.25 Score=50.04 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++..+....+.+..-+..-..++.+|++|.+. .+...+ ..-..+.+.+++.+++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 456688999998877777888887777666677777766654 444333 345789999999999999886532 10
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.+..++..++|.|+....+
T Consensus 183 --------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 --------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --------hHHHHHHHcCCCHHHHHHH
Confidence 1345788999999866544
No 168
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.2 Score=55.62 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec-chhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR-KETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-+....+.+...+........+|++|. ...+... ......++.++++.++....+...+...+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4556789999966555556667776665555666665554 3444422 2334678889999999888877655333321
Q ss_pred chhhhHHHHHHHHHHhcCCCh-HHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLP-LAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~P-lai~~~a 174 (711)
.. .+.+..|++.++|.. .|+..+-
T Consensus 198 i~----~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 198 IS----DAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 234567888888865 4555443
No 169
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.37 E-value=0.008 Score=57.12 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=40.3
Q ss_pred cccccccCCcEEecCCC--CCCccCCccccCCccCceeccCCCCccccccccCCCccccCcc
Q 039822 385 KTLCELYNLQRLDVTYC--KNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGV 444 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~--~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 444 (711)
..+-+|++|++|.++.| .-...++..+.++++|++|++++| .++. +..+..+.+|+.|
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENL 118 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcch
Confidence 56677889999999988 433466666788899999999998 4443 4444444444433
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.11 Score=53.36 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHH
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
+++-++|+|++...+....+.++..+..-..++.+|++|.+. .+...+ .....+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 456679999997766666777777777666677777777653 333322 33578999999999998888653
No 171
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.32 E-value=0.1 Score=51.79 Aligned_cols=71 Identities=7% Similarity=0.020 Sum_probs=38.2
Q ss_pred EEEEEeCCCCCC--------ccCchhhHhhhccCCCCCEEEEEecchhhhh------hh-CC-cCeEECCCCChhhHHHH
Q 039822 72 FLLVLDDVWNED--------YCKWEPFYYCLKNCLYGSKILITTRKETVAC------IM-GS-TDVISVNVLSEMECWSV 135 (711)
Q Consensus 72 ~LlvlDdv~~~~--------~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~------~~-~~-~~~~~l~~L~~~ea~~L 135 (711)
.+|++|++..-. .+..+.+............+|+++....... .. .. ...+.+++++.+|-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 488999984311 1122233333333333335556654433211 11 11 24678899999999999
Q ss_pred HHHHhcC
Q 039822 136 FESLAFF 142 (711)
Q Consensus 136 f~~~~~~ 142 (711)
+.+.+..
T Consensus 187 l~~~~~~ 193 (261)
T TIGR02881 187 AERMVKE 193 (261)
T ss_pred HHHHHHH
Confidence 9877643
No 172
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.39 Score=49.24 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++..+....+.++.-+..-.+++.+|++|.+ ..+... ...-+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45668889999888888888888888766667766666655 444433 2335789999999999999887642 1
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
. + ...++..++|.|.....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123567789999644433
No 173
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.22 E-value=0.12 Score=53.21 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=39.4
Q ss_pred CceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhh-h-hhCCcCeEECCCCChhhHHHHHHH
Q 039822 69 GEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVA-C-IMGSTDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 69 ~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+.+-++|+|++... .....+.+...+.....++++|+||....-. . .......+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 34567899999544 1122233333344445577899998754311 1 112234677777777777766543
No 174
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.28 Score=50.35 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=65.3
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++=++|+|+++..+....+.++.-+..-..++.+|++|.+. .+... ...-+.+.+.+++.+++.+.+.... +.
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~~ 182 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---TM 182 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---CC
Confidence 3567789999998888777888887777666677777777654 44433 3335688999999999998886532 11
Q ss_pred cchhhhHHHHHHHHHHhcCCChHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
+ .+.+..++..++|.|..
T Consensus 183 ---~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 ---S---QDALLAALRLSAGAPGA 200 (334)
T ss_pred ---C---HHHHHHHHHHcCCCHHH
Confidence 0 12256788999999953
No 175
>PRK08181 transposase; Validated
Probab=95.08 E-value=0.044 Score=54.10 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=48.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||..+++ ........++|+++ .++...+..... . ...+.. .+.+. +-=||||||+.
T Consensus 116 GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~--~---~~~~~~----l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 116 GGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARR--E---LQLESA----IAKLD-KFDLLILDDLA 177 (269)
T ss_pred CCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHh--C---CcHHHH----HHHHh-cCCEEEEeccc
Confidence 8999999999998 44444456777764 334444432211 0 111111 12222 23499999995
Q ss_pred CCCccCch--hhHhhhccCCCCCEEEEEecch
Q 039822 81 NEDYCKWE--PFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 81 ~~~~~~~~--~~~~~l~~~~~~s~iivTtR~~ 110 (711)
......+. .+...+........+||||...
T Consensus 178 ~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 178 YVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 44333332 2222222211124689998754
No 176
>PRK06921 hypothetical protein; Provisional
Probab=95.07 E-value=0.079 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=20.6
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCV 29 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~ 29 (711)
|+|||+||.++++ ..... -..++|++.
T Consensus 127 G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 127 GSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 8999999999998 45443 356777775
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.06 E-value=0.1 Score=47.45 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hh-hhhCCcCeEECCCCC
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VA-CIMGSTDVISVNVLS 128 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~-~~~~~~~~~~l~~L~ 128 (711)
+++=++|+|+++..+.+....++..+......+.+|++|++.+ +. +....-..+.+.+++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 4567899999988888888888888887777899999998764 33 222334566666553
No 178
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.98 E-value=0.29 Score=52.91 Aligned_cols=128 Identities=14% Similarity=0.236 Sum_probs=65.6
Q ss_pred CccHHHHHHHHhcChhhhccC-----CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-----EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~Ll 74 (711)
|+|||++|+.+++ .....+ ....|+.+... .++....+.. ...........++.. .+++++|
T Consensus 226 GTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~~--------eLl~kyvGet--e~~ir~iF~~Ar~~a~~g~p~II 293 (512)
T TIGR03689 226 GCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKGP--------ELLNKYVGET--ERQIRLIFQRAREKASDGRPVIV 293 (512)
T ss_pred CCcHHHHHHHHHH--hhccccccccCCceeEEeccch--------hhcccccchH--HHHHHHHHHHHHHHhhcCCCceE
Confidence 8999999999998 443332 23445544331 1111110000 111112222222222 2468999
Q ss_pred EEeCCCCCCc-------cCc-----hhhHhhhccC--CCCCEEEEEecchhhhhh-h-CC---cCeEECCCCChhhHHHH
Q 039822 75 VLDDVWNEDY-------CKW-----EPFYYCLKNC--LYGSKILITTRKETVACI-M-GS---TDVISVNVLSEMECWSV 135 (711)
Q Consensus 75 vlDdv~~~~~-------~~~-----~~~~~~l~~~--~~~s~iivTtR~~~~~~~-~-~~---~~~~~l~~L~~~ea~~L 135 (711)
+||+++..-. .+. ..+...+... ..+..||.||...+..+. + .+ ...++++..+.++..++
T Consensus 294 fIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~I 373 (512)
T TIGR03689 294 FFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADI 373 (512)
T ss_pred EEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHH
Confidence 9999953110 011 1222222211 134456666655543321 1 21 34689999999999999
Q ss_pred HHHHh
Q 039822 136 FESLA 140 (711)
Q Consensus 136 f~~~~ 140 (711)
|..+.
T Consensus 374 l~~~l 378 (512)
T TIGR03689 374 FSKYL 378 (512)
T ss_pred HHHHh
Confidence 98876
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.95 E-value=0.3 Score=46.78 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCceEEEEEeCC-CCCCccCchhhHhhhccC---CCC-CEEEEEecchhhh
Q 039822 68 EGEKFLLVLDDV-WNEDYCKWEPFYYCLKNC---LYG-SKILITTRKETVA 113 (711)
Q Consensus 68 ~~~r~LlvlDdv-~~~~~~~~~~~~~~l~~~---~~~-s~iivTtR~~~~~ 113 (711)
+..||+|.+||. .+.....+..++..+..+ .+. ..|..||-.++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 356999999997 233445566666665432 133 3444555445544
No 180
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.59 Score=48.62 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=97.3
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHHHcCCc--eEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPFDEFRIARSIIEALT--GSAPDVAEFQSLMQHIQEFVEGE--KFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~~~l~~~--r~Ll 74 (711)
|.|||.+...++.+ ..... ..++++....-....+++..|...+. ...+... .+..+.+.+..+.. -+|+
T Consensus 185 Gtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~--~~~~~~~~~h~~q~k~~~ll 260 (529)
T KOG2227|consen 185 GTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTG--MQHLEKFEKHTKQSKFMLLL 260 (529)
T ss_pred CcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHhcccceEEE
Confidence 89999999999984 32222 24567766665667777777777762 1121111 45566666666544 5899
Q ss_pred EEeCCCCCCccCchhhHhhhcc-CCCCCEEEEEecc------hhhhhhhC-----CcCeEECCCCChhhHHHHHHHHhcC
Q 039822 75 VLDDVWNEDYCKWEPFYYCLKN-CLYGSKILITTRK------ETVACIMG-----STDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 75 vlDdv~~~~~~~~~~~~~~l~~-~~~~s~iivTtR~------~~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
|+|.++.-....-+.+...+.+ .-+++|+|+.--- .+...... .-..+.-+|.+.++..++|..+...
T Consensus 261 VlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 261 VLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred EechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 9999843211111122222222 1245555544310 11111111 1347777899999999999888643
Q ss_pred -CCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 143 -GNSMEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 143 -~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
......++.++-.|..++...|.+=.|+.+.-+++
T Consensus 341 ~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 341 ESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred ccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 23333334555566666666666666666665554
No 181
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.91 E-value=0.057 Score=52.49 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=49.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||.++++ .....-..++++++ .++...+-.... .. ... ...+.+.+. +.=+||+||+.
T Consensus 109 GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~-~~--~~~----~~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 109 GTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFS-NS--ETS----EEQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHh-hc--ccc----HHHHHHHhc-cCCEEEEeCCC
Confidence 8999999999998 44443346667743 334444333332 11 111 112333344 34488889996
Q ss_pred CCCccCchh-hHhhhcc--CCCCCEEEEEecc
Q 039822 81 NEDYCKWEP-FYYCLKN--CLYGSKILITTRK 109 (711)
Q Consensus 81 ~~~~~~~~~-~~~~l~~--~~~~s~iivTtR~ 109 (711)
.....+|.. +...+.+ ....-.+||||..
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 655555654 2222221 1224468888864
No 182
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.82 E-value=0.13 Score=52.79 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=48.6
Q ss_pred CccHHHHHHHHhcChhhhccC-Cc-eEEEEeCC-CCCHHHHHHHHHHHhcCCCCChh--h---HHHHHHHHHHHc--CCc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EK-RIWVCVSD-PFDEFRIARSIIEALTGSAPDVA--E---FQSLMQHIQEFV--EGE 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~--~---~~~~~~~~~~~l--~~~ 70 (711)
|+|||||++++++ .+.... +. ++|+.+++ ..++.++++.++..+.....+.. . .......+.+.+ +++
T Consensus 143 GtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~Gk 220 (380)
T PRK12608 143 RAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGK 220 (380)
T ss_pred CCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999988 454433 33 35666664 45688999999887765432211 1 111122222222 488
Q ss_pred eEEEEEeCC
Q 039822 71 KFLLVLDDV 79 (711)
Q Consensus 71 r~LlvlDdv 79 (711)
+++||+|++
T Consensus 221 dVVLvlDsl 229 (380)
T PRK12608 221 DVVILLDSL 229 (380)
T ss_pred CEEEEEeCc
Confidence 999999998
No 183
>PRK12377 putative replication protein; Provisional
Probab=94.82 E-value=0.039 Score=53.77 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=49.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||.++++ ........++++++. ++...|-...... .... .+.+.+ .+-=||||||+.
T Consensus 111 GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~----~~l~~l-~~~dLLiIDDlg 173 (248)
T PRK12377 111 GTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGE----KFLQEL-CKVDLLVLDEIG 173 (248)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHH----HHHHHh-cCCCEEEEcCCC
Confidence 8999999999999 555555567787664 3333333332111 1111 222233 345689999995
Q ss_pred CCCccCchh--hHhhhccC-CCCCEEEEEecc
Q 039822 81 NEDYCKWEP--FYYCLKNC-LYGSKILITTRK 109 (711)
Q Consensus 81 ~~~~~~~~~--~~~~l~~~-~~~s~iivTtR~ 109 (711)
......|.. +...+... ...-.+||||..
T Consensus 174 ~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 174 IQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 444344543 22222211 223457888864
No 184
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=0.48 Score=52.46 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=59.6
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe-cchhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT-RKETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++-++|+|++..-....+..+...+........+|++| ....+... ......++..+++.++....+...+...+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 4566788999996555455666666665444455555555 33333322 223467888999999988888776643332
Q ss_pred cchhhhHHHHHHHHHHhcCCChH
Q 039822 146 MEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
... .+.+..|++.++|.+.
T Consensus 197 ~i~----~~al~~ia~~s~G~~R 215 (559)
T PRK05563 197 EYE----DEALRLIARAAEGGMR 215 (559)
T ss_pred CCC----HHHHHHHHHHcCCCHH
Confidence 111 2346677888888764
No 185
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.0022 Score=58.32 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=6.9
Q ss_pred CCcccEEeecCCCCCc
Q 039822 649 MPRLSFLEIGGCRKLK 664 (711)
Q Consensus 649 l~~L~~L~l~~c~~l~ 664 (711)
.|+|+.|+|++|+.++
T Consensus 150 ~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchheeeccCCCeec
Confidence 3444444444444443
No 186
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.73 E-value=0.085 Score=53.36 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=53.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||.++++ .....=..+.|+++. .+...+....... ... ..+ +.++ +-=||||||+.
T Consensus 166 G~GKThLa~Aia~--~l~~~g~~v~~~~~~------~l~~~lk~~~~~~-----~~~---~~l-~~l~-~~dlLiIDDiG 227 (306)
T PRK08939 166 GVGKSYLLAAIAN--ELAKKGVSSTLLHFP------EFIRELKNSISDG-----SVK---EKI-DAVK-EAPVLMLDDIG 227 (306)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCEEEEEHH------HHHHHHHHHHhcC-----cHH---HHH-HHhc-CCCEEEEecCC
Confidence 8999999999999 444433456777654 3444444443211 111 122 2233 35589999997
Q ss_pred CCCccCchh--hHhhh-ccC-CCCCEEEEEecc
Q 039822 81 NEDYCKWEP--FYYCL-KNC-LYGSKILITTRK 109 (711)
Q Consensus 81 ~~~~~~~~~--~~~~l-~~~-~~~s~iivTtR~ 109 (711)
-.....|.. +...+ ... ..+-.+|+||..
T Consensus 228 ~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 228 AEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 666667764 44443 222 245678888864
No 187
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.71 E-value=0.048 Score=50.95 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.0
Q ss_pred CccHHHHHHHHhcChhhhcc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH 20 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~ 20 (711)
|+|||+++++++. +....
T Consensus 34 G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 34 GSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp TSSHHHHHHHHHH--HHHHH
T ss_pred CCCHHHHHHHHHH--HHHhc
Confidence 9999999999998 45444
No 188
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.63 E-value=0.12 Score=50.84 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.5
Q ss_pred CccHHHHHHHHhcChhhhccC----CceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF----EKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||+||.+++-...+.... ..++||+....++...+. +|+++.
T Consensus 48 gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 48 GSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred ccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 899999999887643333322 258999999989887765 466654
No 189
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.56 E-value=0.15 Score=50.05 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=45.1
Q ss_pred CccHHHHHHHHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCC-h-hh--HHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEALT--------GSAPD-V-AE--FQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~-~-~~--~~~~~~~~~~~ 66 (711)
|+||||||+.+++ .++.+|.. ++++-+++... ..++.+.+...-. ...++ . .. .-...-.+.++
T Consensus 79 G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEy 156 (274)
T cd01133 79 GVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEY 156 (274)
T ss_pred CCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999 67666754 44555665554 5566666554311 11111 0 00 01111223333
Q ss_pred c---CCceEEEEEeCC
Q 039822 67 V---EGEKFLLVLDDV 79 (711)
Q Consensus 67 l---~~~r~LlvlDdv 79 (711)
+ +++.+|+++||+
T Consensus 157 fr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 157 FRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHhcCCeEEEEEeCh
Confidence 3 488999999998
No 190
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.50 E-value=0.0016 Score=55.11 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCccEEEEeccCCCCCCcC--cchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCC
Q 039822 535 PNLKNLAIRKYRGRRNVVP--RNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESD 610 (711)
Q Consensus 535 ~~L~~L~L~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 610 (711)
..+..++|+.|.... .+ +..+.....|+..+|+++ .+.++|. -..+|.++.|++.+++ +.++|.++
T Consensus 27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~------ 96 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL------ 96 (177)
T ss_pred HHhhhcccccchhhH--HHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHH------
Confidence 345567777776654 20 222335566777788888 6667775 3345688888888876 88888773
Q ss_pred CCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc
Q 039822 611 TDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD 668 (711)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 668 (711)
..+|.|+.|+++..+ +.-.+. .+..+.+|-.|+.-+ +....+|-
T Consensus 97 ------Aam~aLr~lNl~~N~-l~~~p~------vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 97 ------AAMPALRSLNLRFNP-LNAEPR------VIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred ------hhhHHhhhcccccCc-cccchH------HHHHHHhHHHhcCCC-CccccCcH
Confidence 367888888888744 322221 233455666666666 45555654
No 191
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.35 E-value=0.02 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.1
Q ss_pred cCceeccCCCCccccccccCCCc
Q 039822 416 KLMYLDNRWTHSLRFLSVGIGEL 438 (711)
Q Consensus 416 ~L~~L~l~~~~~l~~lp~~i~~l 438 (711)
+|++||+++| .++.+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 788999887653
No 192
>PRK04296 thymidine kinase; Provisional
Probab=94.22 E-value=0.051 Score=50.94 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=55.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD--VAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|.||||+|..++. +...+-..++.+. ..++.......++++++..... ....++....+.+ ..++.-+||+|.
T Consensus 12 GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviIDE 86 (190)
T PRK04296 12 NSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLIDE 86 (190)
T ss_pred CCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEEEc
Confidence 8999999999988 4544444445442 1112222233455555432211 1233444444444 233445899999
Q ss_pred CCCCCccCchhhHhhhccCCCCCEEEEEecchhh
Q 039822 79 VWNEDYCKWEPFYYCLKNCLYGSKILITTRKETV 112 (711)
Q Consensus 79 v~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~ 112 (711)
+.--+.++...+...+ ...|..||+|.++.+.
T Consensus 87 aq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 87 AQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred cccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 8322111122222222 2347889999988553
No 193
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.02 E-value=0.024 Score=53.91 Aligned_cols=108 Identities=20% Similarity=0.089 Sum_probs=66.8
Q ss_pred cccCCcEEecCCCCCCccCCccccCCccCceeccCCC--CccccccccCCCccccCccCeeEecccCCCCcCcchhhcCc
Q 039822 389 ELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWT--HSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLN 466 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~--~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~ 466 (711)
.+.+|+.|++.++. ++++ ..+-.|++|+.|.++.| .-...++.-+.++++|++|+++.+...- ...+..++.+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 34666777777654 4443 23556889999999998 3334455555667899988876655443 44566677777
Q ss_pred cCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEE
Q 039822 467 LLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRL 501 (711)
Q Consensus 467 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 501 (711)
+|..|.+..+...+ ........+.-+++|+.|+-
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 77777777664322 22333334444555665544
No 194
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.0073 Score=55.01 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=67.1
Q ss_pred CccEEeEeCCC-CCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccC
Q 039822 562 NLRALVLKNCR-NCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGT 640 (711)
Q Consensus 562 ~L~~L~l~~~~-~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 640 (711)
.++.++-+++. .-+.+..+..+++++.|.+.+|..+.+-..+..+. .+|+|+.|+|++|+.+++-...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----------~~~~L~~L~lsgC~rIT~~GL~- 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----------LAPSLQDLDLSGCPRITDGGLA- 170 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----------cccchheeeccCCCeechhHHH-
Confidence 35667777764 22345668889999999999999887777665542 5799999999999999865432
Q ss_pred ccccccccCCcccEEeecCCCCCcC
Q 039822 641 AIKGEIIIMPRLSFLEIGGCRKLKA 665 (711)
Q Consensus 641 ~~~~~~~~l~~L~~L~l~~c~~l~~ 665 (711)
.+..+++|+.|.|.+.+.+..
T Consensus 171 ----~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 171 ----CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ----HHHHhhhhHHHHhcCchhhhc
Confidence 366889999999988665544
No 195
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.93 E-value=1.2 Score=45.83 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=45.2
Q ss_pred HHHHHHcC--CceEEEEEeCCCCCCccCchhhHhhhcc--CCCCCEEEEEecchhhhhhhCC------------------
Q 039822 61 QHIQEFVE--GEKFLLVLDDVWNEDYCKWEPFYYCLKN--CLYGSKILITTRKETVACIMGS------------------ 118 (711)
Q Consensus 61 ~~~~~~l~--~~r~LlvlDdv~~~~~~~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~~~~------------------ 118 (711)
..+.+.+. .+|.++|+||++.-+++....+...+.. ..++...|+..-.+.+......
T Consensus 161 ~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 161 SKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred HHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 34444443 5799999999977666555555444332 2257777777655555443221
Q ss_pred -cCeEECCCCChhhHHHHHHHH
Q 039822 119 -TDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 119 -~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
..++.+++.+..+-...|...
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHH
Confidence 125666666666555555443
No 196
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.87 E-value=0.18 Score=48.14 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIAR 40 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 40 (711)
|+|||++|.+++. .....-..++||+... +++..+.+
T Consensus 22 GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 22 GSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 8999999999987 4444456899999876 66555444
No 197
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.80 E-value=0.028 Score=53.58 Aligned_cols=210 Identities=16% Similarity=0.139 Sum_probs=112.1
Q ss_pred CcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCc
Q 039822 458 GLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNL 537 (711)
Q Consensus 458 ~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 537 (711)
.+..+..+..+..+.+++..--..........+....+|+..+++....+... +.......-+.+.+-+||+|
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~k-------de~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDK-------DELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccH-------HHHHHHHHHHHHHHhcCCcc
Confidence 34555556667777777632212223445566777778887777544221111 01122333456678889999
Q ss_pred cEEEEeccCCCCCCcCc---chhhcCcCccEEeEeCCCCCCCCCC--C-------------CCCCCCCeeeecccccceE
Q 039822 538 KNLAIRKYRGRRNVVPR---NWVMSLTNLRALVLKNCRNCEHLPP--L-------------GKLPSLEDLEVCRMESVKR 599 (711)
Q Consensus 538 ~~L~L~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~l~~--~-------------~~l~~L~~L~l~~~~~l~~ 599 (711)
+..+|++|.+... .|+ ..+.+-..|++|.+++| ++..+.. + ..-|.|+......+. +..
T Consensus 95 ~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-len 171 (388)
T COG5238 95 QKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LEN 171 (388)
T ss_pred eeeeccccccCcc-cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hcc
Confidence 9999999876653 312 24557889999999999 4443321 2 234677776665543 322
Q ss_pred eccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCC-----cCCCCCC
Q 039822 600 VGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALP-----DHLLQKT 674 (711)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-----~~~~~~~ 674 (711)
-+...... .+..-..|+.+.+.. +.++-=......-.....+.+|+.|++.++ -++-.. ..+...+
T Consensus 172 gs~~~~a~-------~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~ 242 (388)
T COG5238 172 GSKELSAA-------LLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWN 242 (388)
T ss_pred CcHHHHHH-------HHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccc
Confidence 22211000 011113677777765 222200000000011346778888888874 333211 1223355
Q ss_pred CccEEEEecCcc
Q 039822 675 TLQRLDIHGCPI 686 (711)
Q Consensus 675 ~L~~l~l~~c~~ 686 (711)
.|++|.+.+|-.
T Consensus 243 ~lrEL~lnDCll 254 (388)
T COG5238 243 LLRELRLNDCLL 254 (388)
T ss_pred hhhhccccchhh
Confidence 678888888854
No 198
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.68 E-value=0.2 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRI 38 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 38 (711)
|+|||++|.+++. .....-..++||+.. .++...+
T Consensus 33 GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 33 GSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHH
Confidence 8999999999998 444445678999887 5555443
No 199
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.0045 Score=58.95 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=34.6
Q ss_pred ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccc--cCCCccccCccCeeE
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV--GIGELIRLRGVSRFV 448 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~~~~ 448 (711)
-+.+++.|+.|.|+=|+ |.++-. +..|++|+.|+|+.| .+.++-+ -+.+|++|++|.+..
T Consensus 36 ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 34566777777777654 666643 667777777777766 4444432 234455555554443
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.68 E-value=0.031 Score=51.69 Aligned_cols=92 Identities=24% Similarity=0.356 Sum_probs=42.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||..+++ +....=..+.|++.. +++.. +.....+ ...+.. + +.+.+ -=||||||+.
T Consensus 57 G~GKThLa~ai~~--~~~~~g~~v~f~~~~------~L~~~----l~~~~~~-~~~~~~---~-~~l~~-~dlLilDDlG 118 (178)
T PF01695_consen 57 GTGKTHLAVAIAN--EAIRKGYSVLFITAS------DLLDE----LKQSRSD-GSYEEL---L-KRLKR-VDLLILDDLG 118 (178)
T ss_dssp TSSHHHHHHHHHH--HHHHTT--EEEEEHH------HHHHH----HHCCHCC-TTHCHH---H-HHHHT-SSCEEEETCT
T ss_pred hHHHHHHHHHHHH--HhccCCcceeEeecC------ceecc----ccccccc-cchhhh---c-Ccccc-ccEecccccc
Confidence 8999999999998 333332356777643 23333 3222111 111122 2 22332 3477899996
Q ss_pred CCCccCchh--hHhhhccCCCCCEEEEEecch
Q 039822 81 NEDYCKWEP--FYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 81 ~~~~~~~~~--~~~~l~~~~~~s~iivTtR~~ 110 (711)
-....+|.. +...+........+||||...
T Consensus 119 ~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred eeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 544333332 111111111123688888753
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=93.65 E-value=0.14 Score=50.53 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=43.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||..++. .....-..+.|++.. ++...+....... .....+.+.+ .+.-++|+||+.
T Consensus 112 GtGKThLa~al~~--~a~~~G~~v~~~~~~------~l~~~l~~a~~~~--------~~~~~~~~~~-~~~dlLiiDdlg 174 (259)
T PRK09183 112 GVGKTHLAIALGY--EAVRAGIKVRFTTAA------DLLLQLSTAQRQG--------RYKTTLQRGV-MAPRLLIIDEIG 174 (259)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEeHH------HHHHHHHHHHHCC--------cHHHHHHHHh-cCCCEEEEcccc
Confidence 8999999999987 322222345555422 2333322221110 0111222222 344699999995
Q ss_pred CCCccCch--hhHhhhccC-CCCCEEEEEecch
Q 039822 81 NEDYCKWE--PFYYCLKNC-LYGSKILITTRKE 110 (711)
Q Consensus 81 ~~~~~~~~--~~~~~l~~~-~~~s~iivTtR~~ 110 (711)
-.....+. .+...+... ..+ .+||||...
T Consensus 175 ~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 175 YLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred cCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 43332232 232222211 124 488888653
No 202
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.61 E-value=0.012 Score=50.14 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=52.7
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..+..++++++.....|..+-..++-+.+|++.+| .+..+|.- +..++.|+.||++.|+ +.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n----eisdvPeE--------------~Aam~aLr~lNl~~N~-l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN----EISDVPEE--------------LAAMPALRSLNLRFNP-LN 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh----hhhhchHH--------------HhhhHHhhhcccccCc-cc
Confidence 36777777777777777776666667777777765 33345543 3445566666666665 66
Q ss_pred cCCccccCCccCceeccCCC
Q 039822 406 ELPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~ 425 (711)
..|..+..|.+|-.|+.-++
T Consensus 114 ~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cchHHHHHHHhHHHhcCCCC
Confidence 66666666777777766665
No 203
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.59 E-value=0.19 Score=49.24 Aligned_cols=91 Identities=8% Similarity=0.049 Sum_probs=63.2
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCcchh
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSMEER 149 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 149 (711)
=.+|||+++....+.|..+..-..+....++.|..+.+- .+.... ..-+-++-++|.+++...-++..+...+....
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d- 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID- 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-
Confidence 478899998888899999988888766666665555443 322221 22357788999999999888888765555433
Q ss_pred hhHHHHHHHHHHhcCCC
Q 039822 150 ENLEKIGREIIRKCKGL 166 (711)
Q Consensus 150 ~~~~~~~~~i~~~~~g~ 166 (711)
.+..+.|++.++|-
T Consensus 210 ---~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 210 ---DDALKLIAKISDGD 223 (346)
T ss_pred ---HHHHHHHHHHcCCc
Confidence 23456688888774
No 204
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.53 E-value=0.36 Score=50.95 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=29.9
Q ss_pred CCEEEEEecchhhhhh-h-C---CcCeEECCCCChhhHHHHHHHHhcC
Q 039822 100 GSKILITTRKETVACI-M-G---STDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 100 ~s~iivTtR~~~~~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
+..||.||...+..+. + . -...+++++.+.++-.++|+.....
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 5678888876543322 1 1 1357899999999999999877643
No 205
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.49 E-value=0.088 Score=55.29 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=46.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHHHcC--CceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQ-SLMQHIQEFVE--GEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~l~--~~r~LlvlD 77 (711)
|+|||++|+++++.......|+.+.||.++...+..+++.-+.- ....-.-.. ...+.+.+..+ ++++++|+|
T Consensus 204 GtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliID 279 (459)
T PRK11331 204 GVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIID 279 (459)
T ss_pred CCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----CCCCeEecCchHHHHHHHHHhcccCCcEEEEe
Confidence 89999999999984333446778889999988877665532210 000000000 11111222221 467999999
Q ss_pred CCCCCCc
Q 039822 78 DVWNEDY 84 (711)
Q Consensus 78 dv~~~~~ 84 (711)
++...+.
T Consensus 280 EINRani 286 (459)
T PRK11331 280 EINRANL 286 (459)
T ss_pred hhhccCH
Confidence 9965553
No 206
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.45 E-value=0.23 Score=52.77 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=30.5
Q ss_pred CCCEEEEEecchhhhhhh--C---CcCeEECCCCChhhHHHHHHHHhc
Q 039822 99 YGSKILITTRKETVACIM--G---STDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 99 ~~s~iivTtR~~~~~~~~--~---~~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
.+.+||.||...+..+.. . -...++++..+.++-.++|.....
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 356888888866544331 1 145888999999999999987653
No 207
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.19 E-value=0.055 Score=28.09 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=7.5
Q ss_pred CCcEEecCCCCCCccCC
Q 039822 392 NLQRLDVTYCKNLEELP 408 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP 408 (711)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 56666666665 55554
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.16 E-value=0.86 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=20.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRI 38 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 38 (711)
|+|||++|+.++. .... ..++++.....+..++
T Consensus 31 GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 31 GTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred CCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 8999999999986 3322 3445555554444433
No 209
>PRK10536 hypothetical protein; Provisional
Probab=93.13 E-value=0.2 Score=48.53 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=28.3
Q ss_pred HcCCceE---EEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 66 FVEGEKF---LLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 66 ~l~~~r~---LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
+++++.+ +||+|.+..-+..+...+ +-..+.+|++|+|--..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~---ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMF---LTRLGENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHH---HhhcCCCCEEEEeCChh
Confidence 5566654 999999966555444444 44456799999986544
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.08 E-value=0.068 Score=50.14 Aligned_cols=106 Identities=25% Similarity=0.239 Sum_probs=51.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE--e--CCCC--CHHH-------HHHHHHHHhcCCCCChhhHHHHHHH-----
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC--V--SDPF--DEFR-------IARSIIEALTGSAPDVAEFQSLMQH----- 62 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~--~--~~~~--~~~~-------~~~~i~~~l~~~~~~~~~~~~~~~~----- 62 (711)
|.|||.||.+.+.+.-..+.|+.++++. + ++.. -+.. ....+...+..-.. ....+...+.
T Consensus 29 GTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~-~~~~~~~~~~~~Ie~ 107 (205)
T PF02562_consen 29 GTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFG-KEKLEELIQNGKIEI 107 (205)
T ss_dssp TSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS--TTCHHHHHHTTSEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhC-hHhHHHHhhcCeEEE
Confidence 8999999999988655568888888775 1 1111 0111 12222222221111 1111111110
Q ss_pred -HHHHcCCc---eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 63 -IQEFVEGE---KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 63 -~~~~l~~~---r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
-..+++++ ..++|+|.+.+-+..++..+.. ..+.+||||++=-..
T Consensus 108 ~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~ 156 (205)
T PF02562_consen 108 EPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPS 156 (205)
T ss_dssp EEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE---
T ss_pred EehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCce
Confidence 11244555 4699999997766656666644 456699999987544
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.92 E-value=1.3 Score=45.30 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhhh-CCcCeEECCCCChhhHHHHHHHH
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACIM-GSTDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
++-++|+|++..-+...-..+...+.....+..+|++|.+.+ +...+ ..-..+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344445688866555555556555554444566777777643 33322 22468889999999998888654
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.86 E-value=0.3 Score=57.04 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=51.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|+|||++|+.+++ .....-...+.++.+.... ......+.+..+.-...++ ...+.+.++ ...-+|+||++
T Consensus 608 G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-----~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 608 GVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-----KHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred CCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-----hhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeeh
Confidence 8999999999987 3322222344454443211 1112233333322111111 111223332 33469999999
Q ss_pred CCCCccCchhhHhhhccC-----------CCCCEEEEEecc
Q 039822 80 WNEDYCKWEPFYYCLKNC-----------LYGSKILITTRK 109 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-----------~~~s~iivTtR~ 109 (711)
.......+..+...+..+ ...+-||+||..
T Consensus 680 eka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 680 EKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred hhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 776766777766655432 112337778765
No 213
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.85 E-value=0.32 Score=46.84 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+||||+|.+++. .....=..++|++....+.
T Consensus 29 GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 29 GTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 8999999999997 4434434678888765554
No 214
>PTZ00202 tuzin; Provisional
Probab=92.70 E-value=0.46 Score=49.47 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=68.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHHHc-C-CceEEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDV--AEFQSLMQHIQEFV-E-GEKFLLVL 76 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l-~-~~r~Llvl 76 (711)
|+||||+++.+... .. ...++.-.. ++.++++.|+.+|+...... +-.+...+.+.+.- . +++.+||+
T Consensus 296 G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 296 GCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred CCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 89999999999973 22 223333223 77999999999999643211 11223333333322 2 56666666
Q ss_pred eCCCCCCccCchhhHh---hhccCCCCCEEEEEecchhhhhhhC--C-cCeEECCCCChhhHHHHHHH
Q 039822 77 DDVWNEDYCKWEPFYY---CLKNCLYGSKILITTRKETVACIMG--S-TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 77 Ddv~~~~~~~~~~~~~---~l~~~~~~s~iivTtR~~~~~~~~~--~-~~~~~l~~L~~~ea~~Lf~~ 138 (711)
-==+- .++..+-. .+--...-|+|++---.+....... + -..|.+++++.++|.+.-..
T Consensus 368 ~lreg---~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 368 KLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred EecCC---CcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 54311 12222211 1211223467776554433222111 1 35788999999888776544
No 215
>PRK06526 transposase; Provisional
Probab=92.67 E-value=0.19 Score=49.41 Aligned_cols=13 Identities=46% Similarity=0.261 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||+||..+..
T Consensus 108 GtGKThLa~al~~ 120 (254)
T PRK06526 108 GTGKTHLAIGLGI 120 (254)
T ss_pred CCchHHHHHHHHH
Confidence 8999999999987
No 216
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.67 E-value=0.3 Score=49.62 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=32.3
Q ss_pred CccHHHHHHHHhcChhhhc---cC-CceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKN---HF-EKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~---~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||+++.+++-..+... .- ..++||+....+++..+.+ +++.++
T Consensus 106 GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 106 RCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 8999999998775322221 11 3689999999888887754 566654
No 217
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.55 E-value=0.47 Score=42.93 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=23.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+||||++..++. .....-..++|++......
T Consensus 9 G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 9 GSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 8999999999988 3443334677888766554
No 218
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.39 E-value=0.35 Score=46.84 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=26.8
Q ss_pred CccHHHHHHHHhcChhhhccC------CceEEEEeCCCCCHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF------EKRIWVCVSDPFDEFRIA 39 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~ 39 (711)
|+|||++|.+++.. ....- ..++|++....++...+.
T Consensus 29 GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 29 GSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 89999999999873 32233 468899988777765443
No 219
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.35 E-value=0.23 Score=45.95 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=21.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC 28 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~ 28 (711)
|+||||+|+.+++ .....+..++++.
T Consensus 17 GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 17 GSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 8999999999998 6666777777774
No 220
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.33 E-value=0.35 Score=49.84 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=64.0
Q ss_pred CccHHHHHHHHhcChhhhcc---------------------CCceEEEEeCCCCC---HHHHHHHHHHHhcCCCCChhhH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH---------------------FEKRIWVCVSDPFD---EFRIARSIIEALTGSAPDVAEF 56 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~---------------------F~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~ 56 (711)
|+||||+|..+++ .+-+. .+.+..+..+.... ..+..+.+.+.......
T Consensus 34 G~Gktt~a~~lA~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----- 106 (325)
T COG0470 34 GVGKTTAALALAK--ELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL----- 106 (325)
T ss_pred CCCHHHHHHHHHH--HHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC-----
Confidence 8999999999988 33322 23455555444443 33344444443322221
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCC
Q 039822 57 QSLMQHIQEFVEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNV 126 (711)
Q Consensus 57 ~~~~~~~~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~ 126 (711)
.++.-++|+|+++..+...-+.+..-+......+.+|++|.+. .+...+ .....+++++
T Consensus 107 -----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 107 -----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred -----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 3567899999997766655566666666656678888888743 333322 2245666666
No 221
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.25 E-value=0.72 Score=48.60 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCCEEEEEecchhhhhh--hCC---cCeEECCCCChhhHHHHHHHHhc
Q 039822 99 YGSKILITTRKETVACI--MGS---TDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 99 ~~s~iivTtR~~~~~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
.+..||.||...+..+. ..+ ...+.++..+.++-..+|.....
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 35678888886654432 121 45788888888888888876643
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.21 E-value=0.27 Score=50.20 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=47.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||.++++ .....-..|+|+++.. +...+...-. .. ..+.... .+.+.+ -=||||||+.
T Consensus 193 GtGKThLa~aIa~--~l~~~g~~V~y~t~~~------l~~~l~~~~~-~~--~~~~~~~----~~~l~~-~DLLIIDDlG 256 (329)
T PRK06835 193 GTGKTFLSNCIAK--ELLDRGKSVIYRTADE------LIEILREIRF-NN--DKELEEV----YDLLIN-CDLLIIDDLG 256 (329)
T ss_pred CCcHHHHHHHHHH--HHHHCCCeEEEEEHHH------HHHHHHHHHh-cc--chhHHHH----HHHhcc-CCEEEEeccC
Confidence 8999999999998 4443334677776543 2222222111 11 0111111 222332 2479999995
Q ss_pred CCCccCchh--hHhhhccC-CCCCEEEEEecc
Q 039822 81 NEDYCKWEP--FYYCLKNC-LYGSKILITTRK 109 (711)
Q Consensus 81 ~~~~~~~~~--~~~~l~~~-~~~s~iivTtR~ 109 (711)
.....+|.. +...+... ..+..+||||..
T Consensus 257 ~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 257 TEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 543333332 22222211 235578998874
No 223
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.19 E-value=0.26 Score=57.70 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=52.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|+|||++|+.++. .....-...+.++.+...+... ...+.+..+.-...++ ...+.+.++ ....+|+||++
T Consensus 605 GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~-----~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 605 GVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHS-----VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred CCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccch-----HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEecc
Confidence 8999999999997 3333223445555554322111 1222222222111111 011222222 33458999999
Q ss_pred CCCCccCchhhHhhhccC-----------CCCCEEEEEecc
Q 039822 80 WNEDYCKWEPFYYCLKNC-----------LYGSKILITTRK 109 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-----------~~~s~iivTtR~ 109 (711)
....+..+..+...+..+ ...+-||+||..
T Consensus 677 eka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 677 EKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred ccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 887777777777666432 123347777764
No 224
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.13 E-value=0.57 Score=54.03 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=44.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|+|||++|+.+++ .. +...+.++.++..+.. .+...+ +..+.-...+ ....+.+.++ ...-+++||++
T Consensus 494 GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~----~~~~li-g~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 494 GVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH----TVSRLI-GAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred CccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----cHHHHh-cCCCCCcccc-hhhHHHHHHHhCCCeEEEEech
Confidence 8999999999997 33 2345566655432211 111112 2221110011 1112233333 34569999999
Q ss_pred CCCCccCchhhHhhhc
Q 039822 80 WNEDYCKWEPFYYCLK 95 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~ 95 (711)
+...++.++.+...+.
T Consensus 563 eka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 563 EKAHPDIYNILLQVMD 578 (731)
T ss_pred hhcCHHHHHHHHHhhc
Confidence 8777766666666554
No 225
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.17 Score=56.75 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=52.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceE-EEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKF-LLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~-LlvlDdv 79 (711)
|||||.||++++. ..-+.=+..+-++.|+..... -.++|-+.++. ....+..-.+-+.+++++| +|.||.+
T Consensus 531 GVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~EkH-----sVSrLIGaPPG-YVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 531 GVGKTELAKALAE--ALFGDEQALIRIDMSEYMEKH-----SVSRLIGAPPG-YVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred cccHHHHHHHHHH--HhcCCCccceeechHHHHHHH-----HHHHHhCCCCC-CceeccccchhHhhhcCCCeEEEechh
Confidence 9999999999997 222211455566555532222 23344444443 1111113344556667766 8889999
Q ss_pred CCCCccCchhhHhhhccC
Q 039822 80 WNEDYCKWEPFYYCLKNC 97 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~ 97 (711)
....++.++-+...+.++
T Consensus 603 EKAHpdV~nilLQVlDdG 620 (786)
T COG0542 603 EKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hhcCHHHHHHHHHHhcCC
Confidence 888877777776666543
No 226
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.91 E-value=0.49 Score=48.55 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=32.8
Q ss_pred CccHHHHHHHHhcChhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKN----HFEKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||+|+.+++-..+... .-..++||+....|++..+.+ +++.++
T Consensus 136 GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 136 RSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 8999999999875323221 124689999999999887655 555554
No 227
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.86 E-value=1.6 Score=51.04 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred CccHHHHHHHHhcChhhhccC------CceE-EEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC--Cce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF------EKRI-WVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE--GEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F------~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~--~~r 71 (711)
|+||||+|..+++ ++.... ...+ .++.+.- ..+... ..+.+...+.+.+.++ +.+
T Consensus 218 GvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l-------------~ag~~~-~ge~e~~lk~ii~e~~~~~~~ 281 (852)
T TIGR03345 218 GVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLL-------------QAGASV-KGEFENRLKSVIDEVKASPQP 281 (852)
T ss_pred CCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhh-------------hccccc-chHHHHHHHHHHHHHHhcCCC
Confidence 9999999999998 443221 1222 2322220 001111 1223333333333332 468
Q ss_pred EEEEEeCCCCC-------CccCch-hhHhhhccCCCCCEEEEEecchhhhhh-------hCCcCeEECCCCChhhHHHHH
Q 039822 72 FLLVLDDVWNE-------DYCKWE-PFYYCLKNCLYGSKILITTRKETVACI-------MGSTDVISVNVLSEMECWSVF 136 (711)
Q Consensus 72 ~LlvlDdv~~~-------~~~~~~-~~~~~l~~~~~~s~iivTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf 136 (711)
.+|++|++-.- ...+.. -+.+.+.. + .-++|-||........ ....+.+.+++++.++..+++
T Consensus 282 ~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL 359 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRML 359 (852)
T ss_pred eEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHH
Confidence 99999997221 111111 13333322 1 3566767665432111 123468999999999999997
Q ss_pred HHH
Q 039822 137 ESL 139 (711)
Q Consensus 137 ~~~ 139 (711)
+..
T Consensus 360 ~~~ 362 (852)
T TIGR03345 360 RGL 362 (852)
T ss_pred HHH
Confidence 544
No 228
>PRK08118 topology modulation protein; Reviewed
Probab=91.81 E-value=0.057 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=19.4
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEE
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIW 26 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~w 26 (711)
|+||||+|+++++...+. -+||..+|
T Consensus 11 GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 11 GSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCHHHHHHHHHHHhCCCceecchhhc
Confidence 899999999999843332 45666666
No 229
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.63 E-value=0.12 Score=26.83 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=7.8
Q ss_pred CcccEEeecCCCCCcCCC
Q 039822 650 PRLSFLEIGGCRKLKALP 667 (711)
Q Consensus 650 ~~L~~L~l~~c~~l~~lp 667 (711)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666653 55554
No 230
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.59 E-value=1.1 Score=40.69 Aligned_cols=107 Identities=21% Similarity=0.155 Sum_probs=56.6
Q ss_pred CccHHHHHHHHhcChhhhccCCc-eE-EEEeCCCCCHHHHHHHHHHHhc----CC------CCCh---hhHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEK-RI-WVCVSDPFDEFRIARSIIEALT----GS------APDV---AEFQSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~-~~-wv~~~~~~~~~~~~~~i~~~l~----~~------~~~~---~~~~~~~~~~~~ 65 (711)
|.||||.|..++.. .....+.. ++ |+.-.........++.. .+. +. .... ....+..+..++
T Consensus 15 GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~~ 91 (173)
T TIGR00708 15 GKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIAKAAWQHAKE 91 (173)
T ss_pred CCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHHHHHHHHHHH
Confidence 88999999888772 22233332 12 33333223333344332 110 00 1111 112333444555
Q ss_pred HcCCce-EEEEEeCCC---CCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 66 FVEGEK-FLLVLDDVW---NEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 66 ~l~~~r-~LlvlDdv~---~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
.+...+ =|+|||.+- +...-+.+.+...+.....+..+|+|-|+.
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 555444 499999972 122234456666676666788999999986
No 231
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.56 E-value=0.32 Score=44.43 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCC--ceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEG--EKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~r~LlvlDd 78 (711)
|+|||++|.+++. . ....++++......+.. ..+.|.+.-.... ......+....+.+.+.. +.-.+++|.
T Consensus 9 ~sGKS~~a~~~~~--~---~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~-~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 9 RSGKSRFAERLAA--E---LGGPVTYIATAEAFDDE-MAERIARHRKRRP-AHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred CCCHHHHHHHHHH--h---cCCCeEEEEccCcCCHH-HHHHHHHHHHhCC-CCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 7999999999986 2 22467788777777653 4444444332222 111111222223333311 233799999
Q ss_pred C--C------CCCc-------cCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCC
Q 039822 79 V--W------NEDY-------CKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFESLAFFG 143 (711)
Q Consensus 79 v--~------~~~~-------~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 143 (711)
+ | +... ..+..+...+.. .+..+|++|..- -.+..+.+...+.|+....
T Consensus 82 lt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsnEv------------G~g~vp~~~~~r~f~d~lG-- 145 (169)
T cd00544 82 LTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSNEV------------GLGVVPENALGRRFRDELG-- 145 (169)
T ss_pred HhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEECCc------------CCCCCCCCHHHHHHHHHHH--
Confidence 6 1 1100 011112222222 355566666421 2334456667777766652
Q ss_pred CCcchhhhHHHHHHHHHHhcCCChH
Q 039822 144 NSMEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
..+..+...|.++.....|+|+
T Consensus 146 ---~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 146 ---RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred ---HHHHHHHHHCCEEEEEECCcce
Confidence 2223444445555555567775
No 232
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.55 E-value=0.78 Score=44.72 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=27.6
Q ss_pred CccHHHHHHHHhcChhhhcc----CCceEEEEeCCCCCHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH----FEKRIWVCVSDPFDEFRIAR 40 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~ 40 (711)
|+|||++|.+++........ -..++|++....++...+.+
T Consensus 29 GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 29 GSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 89999999999853222221 35899999888777554433
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=91.55 E-value=2.5 Score=46.49 Aligned_cols=136 Identities=12% Similarity=0.053 Sum_probs=76.8
Q ss_pred CccHHHHHHHHhcChh---hhccCCceE--EEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-----CCc
Q 039822 1 GIGKTTLAQLAYNNDD---VKNHFEKRI--WVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-----EGE 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~---~~~~F~~~~--wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~ 70 (711)
|+|||..+..|.+.-+ -.+.-+... .|..-.-..+.+++..|+.++.+...... .....+..+. +.+
T Consensus 432 GtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~---~al~~L~~~f~~~k~~~~ 508 (767)
T KOG1514|consen 432 GTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWD---AALEALNFRFTVPKPKRS 508 (767)
T ss_pred CCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHH---HHHHHHHHhhccCCCCCC
Confidence 8999999999998421 122233333 44444556799999999999987764332 2233333333 245
Q ss_pred eEEEEEeCC---CCCCccCchhhHhhhcc-CCCCCEEEEEecc--hhhh-hhhC-------CcCeEECCCCChhhHHHHH
Q 039822 71 KFLLVLDDV---WNEDYCKWEPFYYCLKN-CLYGSKILITTRK--ETVA-CIMG-------STDVISVNVLSEMECWSVF 136 (711)
Q Consensus 71 r~LlvlDdv---~~~~~~~~~~~~~~l~~-~~~~s~iivTtR~--~~~~-~~~~-------~~~~~~l~~L~~~ea~~Lf 136 (711)
..++++|++ |...++.+..| +.| ..++||.+|.+=- .+.. ..+. ....+...|.++++-.++.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii 585 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEII 585 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHH
Confidence 688888886 33333233322 222 2367777776521 1111 1111 1235566777777777777
Q ss_pred HHHhcC
Q 039822 137 ESLAFF 142 (711)
Q Consensus 137 ~~~~~~ 142 (711)
..+..+
T Consensus 586 ~~RL~~ 591 (767)
T KOG1514|consen 586 SARLKG 591 (767)
T ss_pred HHhhcc
Confidence 666533
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.42 E-value=0.28 Score=57.29 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=52.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCc-eEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGE-KFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-r~LlvlDdv 79 (711)
|+|||+||+.+++ ..-+.-...+-++.++..+...+ . .+.+..+.-...++ ...+.+.++.+ ..+++||++
T Consensus 549 GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~----~-~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 549 GVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV----S-KLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred CCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH----H-HhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECCh
Confidence 8999999999987 33222233444554443222111 1 12222211110111 11233444444 468999999
Q ss_pred CCCCccCchhhHhhhccC-----------CCCCEEEEEecc
Q 039822 80 WNEDYCKWEPFYYCLKNC-----------LYGSKILITTRK 109 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-----------~~~s~iivTtR~ 109 (711)
+...+..++.+...+..+ ...+-||+||..
T Consensus 621 eka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 621 EKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred hhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 877777777776665432 134556666654
No 235
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.35 E-value=0.83 Score=45.17 Aligned_cols=76 Identities=21% Similarity=0.132 Sum_probs=47.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHH-hc---C-CCCChhhHHHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEA-LT---G-SAPDVAEFQSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~---~-~~~~~~~~~~~~~~~~~~l~~~r~Llv 75 (711)
|+||||+|.+++-. ....-..++|++..+.+++..+..- +.. +. . +.+...+..+......+....+--|+|
T Consensus 70 gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l-~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvV 146 (279)
T COG0468 70 SSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQL-GVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLV 146 (279)
T ss_pred CcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHH-HHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEE
Confidence 78999999998874 3333338899999999988765443 333 22 1 222233333444444444444467999
Q ss_pred EeCC
Q 039822 76 LDDV 79 (711)
Q Consensus 76 lDdv 79 (711)
+|.|
T Consensus 147 VDSv 150 (279)
T COG0468 147 VDSV 150 (279)
T ss_pred EecC
Confidence 9998
No 236
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.04 E-value=0.26 Score=57.36 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=49.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|+|||.+|+.+++ ..-+.....+-++++...+. ..+ ..+.+..+.-...++. ..+.+.++ ....+|+||++
T Consensus 606 GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~----~~~-~~l~g~~~gyvg~~~~-g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 606 GVGKTETALALAE--LLYGGEQNLITINMSEFQEA----HTV-SRLKGSPPGYVGYGEG-GVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred CCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhh----hhh-ccccCCCCCccccccc-chHHHHHHhCCCcEEEEech
Confidence 8999999999887 33222223333333322111 111 1222222211111110 11222222 45679999999
Q ss_pred CCCCccCchhhHhhhccCC-----------CCCEEEEEecc
Q 039822 80 WNEDYCKWEPFYYCLKNCL-----------YGSKILITTRK 109 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~-----------~~s~iivTtR~ 109 (711)
....+..++.+...+..+. ..+-||+||..
T Consensus 678 eka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 678 EKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred hhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 7777666666665544331 34566667654
No 237
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.84 E-value=0.82 Score=50.95 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=15.2
Q ss_pred CeEECCCCChhhHHHHHHHHh
Q 039822 120 DVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 120 ~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
..++..+++..+-.+.+.+.+
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 357888888888666666554
No 238
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=90.64 E-value=0.73 Score=47.33 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=32.0
Q ss_pred CccHHHHHHHHhcChhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF----EKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||++|..++......... ..++||+....+++.++. +|++.+.
T Consensus 133 g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 133 RTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 899999999888532222111 268999999999887664 5566654
No 239
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.63 E-value=1.5 Score=40.60 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=57.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC--CCCHHHHHH------HHHHHhcCC------CCChhhHHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD--PFDEFRIAR------SIIEALTGS------APDVAEFQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~------~~~~~~~~~~~~~~~~~ 66 (711)
|.|||||++.++. ......+.+++.-.. ..+...... ++++.++.. ....+..+...-.+.+.
T Consensus 35 GsGKStLl~~i~G---~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 111 (180)
T cd03214 35 GAGKSTLLKTLAG---LLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARA 111 (180)
T ss_pred CCCHHHHHHHHhC---CCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 8999999999997 233455666553211 112222111 134443321 11122233344446666
Q ss_pred cCCceEEEEEeCCCCC-CccCchhhHhhhccCC-C-CCEEEEEecchhhh
Q 039822 67 VEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCL-Y-GSKILITTRKETVA 113 (711)
Q Consensus 67 l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~-~-~s~iivTtR~~~~~ 113 (711)
+-.++-++++|+.... +......+...+.... . +..||++|.+.+..
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 7777889999997322 1222333333333221 2 56788888876654
No 240
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.56 E-value=1.4 Score=43.97 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=27.5
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||++.+++. ..... =..++|++...+ ..++.+.+...+
T Consensus 40 G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 40 GVGKTTFLREYAL--DLITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CCCHHHHHHHHHH--HHHHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 8999999999987 33333 246889987663 344455554443
No 241
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.47 E-value=0.31 Score=49.40 Aligned_cols=70 Identities=24% Similarity=0.268 Sum_probs=44.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHHHcC-CceE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTG-------SAPDVAEFQSLMQHIQEFVE-GEKF 72 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~~~~~l~-~~r~ 72 (711)
|+||||||.+++. .....-..++||+..+.+++. .+++++. ..+ ...++....+....+ +.--
T Consensus 65 GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p--~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 65 SSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQP--DTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCC--CCHHHHHHHHHHHHhccCCC
Confidence 8999999999887 333344568899988877754 2333332 122 233445555555554 3466
Q ss_pred EEEEeCC
Q 039822 73 LLVLDDV 79 (711)
Q Consensus 73 LlvlDdv 79 (711)
++|+|-|
T Consensus 136 lIVIDSv 142 (325)
T cd00983 136 LIVVDSV 142 (325)
T ss_pred EEEEcch
Confidence 8999997
No 242
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.42 E-value=0.14 Score=46.85 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=46.4
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+|||.+|+.+++ .+. +.....+-++.+......+ ...+...+.+..+......+ .-+|+||++
T Consensus 13 GvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~-~~~~~~~l~~~~~~~v~~~~------------~gVVllDEi 77 (171)
T PF07724_consen 13 GVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDD-VESSVSKLLGSPPGYVGAEE------------GGVVLLDEI 77 (171)
T ss_dssp TSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHH-CSCHCHHHHHHTTCHHHHHH------------HTEEEEETG
T ss_pred CCCHHHHHHHHHH--HhccCCccchHHHhhhcccccch-HHhhhhhhhhcccceeeccc------------hhhhhhHHH
Confidence 8999999999998 555 5666667777665544221 12222222222221111111 119999999
Q ss_pred CCCCc-----------cCchhhHhhhc
Q 039822 80 WNEDY-----------CKWEPFYYCLK 95 (711)
Q Consensus 80 ~~~~~-----------~~~~~~~~~l~ 95 (711)
+.... ..+..+...+.
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred hhccccccccchhhHHHHHHHHHHHhc
Confidence 77766 66777766553
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=90.39 E-value=3.3 Score=41.76 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=61.2
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++=++|+|++...+......+...+..-+..+.+|++|.+ ..+... ....+.+++.+++.++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~----~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN----K- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC----C-
Confidence 47788899999666655667777777776667777765543 444433 3446799999999999988776531 1
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
. .+.+..++...+|.=-|+..+
T Consensus 164 --~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 --E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred --C---hhHHHHHHHHcCCHHHHHHHH
Confidence 0 122445555666633455443
No 244
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=89.76 E-value=1.4 Score=43.30 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=45.0
Q ss_pred CccHHHHHHHHhcChhh--hccCCceEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCC--h-----hhHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDV--KNHFEKRIWVCVSDPFD-EFRIARSIIEALTG--------SAPD--V-----AEFQSLMQH 62 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~--~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~--~-----~~~~~~~~~ 62 (711)
|+|||+|+..+.+...+ +++-+.++++-+++... ..++...+...-.. +..+ . .-..-...+
T Consensus 79 GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAE 158 (276)
T cd01135 79 GLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAE 158 (276)
T ss_pred CCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 89999999998874221 12246678888876654 56666665553211 0111 0 011112222
Q ss_pred HHHHcCCceEEEEEeCC
Q 039822 63 IQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv 79 (711)
..+.-+++++|+++||+
T Consensus 159 yfrd~~g~~VLl~~D~l 175 (276)
T cd01135 159 YLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHhccCCeEEEEEcCh
Confidence 33333478999999998
No 245
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.73 E-value=1.3 Score=40.75 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=31.3
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhhh
Q 039822 62 HIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVACI 115 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~ 115 (711)
.+.+.+-.+.-++++|+.... +......+...+.....+..||++|.+......
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 355666677789999997432 112223333333322235678888888766543
No 246
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.66 E-value=3 Score=48.16 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred CccHHHHHHHHhcChhhhc-----cC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEE
Q 039822 1 GIGKTTLAQLAYNNDDVKN-----HF-EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~-----~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~L 73 (711)
|+|||++|+.+++ ++.. .+ ...+|. ++ .. .+. .+.. -..+.++..+.+.+.++ .++.+
T Consensus 213 G~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~-~~----~~----~l~---a~~~-~~g~~e~~l~~i~~~~~~~~~~I 277 (731)
T TIGR02639 213 GVGKTAIAEGLAL--RIAEGKVPENLKNAKIYS-LD----MG----SLL---AGTK-YRGDFEERLKAVVSEIEKEPNAI 277 (731)
T ss_pred CCCHHHHHHHHHH--HHHhCCCchhhcCCeEEE-ec----HH----HHh---hhcc-ccchHHHHHHHHHHHHhccCCeE
Confidence 8999999999998 3322 12 223332 11 11 111 1111 11233444444444443 45899
Q ss_pred EEEeCCCCCC---------ccCchhhHhhhccCCCCCEEEEEecchhhhhh------h-CCcCeEECCCCChhhHHHHHH
Q 039822 74 LVLDDVWNED---------YCKWEPFYYCLKNCLYGSKILITTRKETVACI------M-GSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 74 lvlDdv~~~~---------~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~------~-~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
|++|++..-. .+..+.+...+.. + .-++|-+|...+.... . ...+.+++++++.++..+++.
T Consensus 278 LfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred EEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHH
Confidence 9999983110 0111223333322 2 2355555554322111 1 224589999999999999998
Q ss_pred HHh
Q 039822 138 SLA 140 (711)
Q Consensus 138 ~~~ 140 (711)
...
T Consensus 356 ~~~ 358 (731)
T TIGR02639 356 GLK 358 (731)
T ss_pred HHH
Confidence 654
No 247
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=89.44 E-value=1.2 Score=45.49 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=30.2
Q ss_pred CccHHHHHHHHhcChhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF----EKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||+++.+++......... ..++||+....++...+ ..+++.+.
T Consensus 106 g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 106 RTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 899999999987532222112 25799998888777753 44555543
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=0.51 Score=51.54 Aligned_cols=61 Identities=25% Similarity=0.217 Sum_probs=38.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF--DEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+||+++++... +++.-++.+|+.+.-. ..+.+++. ....+.+.+.-.+-+|||||
T Consensus 441 GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~~~PSiIvLDd 502 (952)
T KOG0735|consen 441 GSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALWYAPSIIVLDD 502 (952)
T ss_pred CCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHhhCCcEEEEcc
Confidence 8999999999998432 4444566677655422 12222222 22334556677899999999
Q ss_pred C
Q 039822 79 V 79 (711)
Q Consensus 79 v 79 (711)
+
T Consensus 503 l 503 (952)
T KOG0735|consen 503 L 503 (952)
T ss_pred h
Confidence 8
No 249
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.28 E-value=1.3 Score=47.76 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=57.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
++.=..|+|.|---+...|..++.-+..-...-+.|..|.+.+ +. +.....+.|..+.++.++-...+...+...+..
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 4445788999833344556666555554445667777777643 22 333446788999999998888887776544442
Q ss_pred chhhhHHHHHHHHHHhcCCC
Q 039822 147 EERENLEKIGREIIRKCKGL 166 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~ 166 (711)
.. .+...-|++..+|.
T Consensus 198 ~e----~~aL~~ia~~a~Gs 213 (515)
T COG2812 198 IE----EDALSLIARAAEGS 213 (515)
T ss_pred cC----HHHHHHHHHHcCCC
Confidence 22 23344455555553
No 250
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.10 E-value=12 Score=36.85 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=42.5
Q ss_pred EEEEEecchhhhhhhCC--cCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHH
Q 039822 102 KILITTRKETVACIMGS--TDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 102 ~iivTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 169 (711)
-|=-|||--.+...... .-+.+++..+.+|-.++..+.+..-+... -.+-+.+|+++.+|-|--
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRI 219 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHH
Confidence 34457776544433221 34778899999999999988874322211 134578899999999943
No 251
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.05 E-value=1.7 Score=37.40 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=36.8
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccC
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGV 607 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 607 (711)
.+..+.+|+.+.+.. .... +....+..+.+|+.+.+.+. +..++. +..+++|+.+.+.. .+..++...+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F-- 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF-- 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT--
T ss_pred HHhCCCCCCEEEECC-CeeE--eChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccc--
Confidence 445566777777753 2222 32444556667777777653 444443 55566677777754 3444544322
Q ss_pred CCCCCCCcccCCCccceeecc
Q 039822 608 ESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 608 ~~~~~~~~~~~~~~L~~L~l~ 628 (711)
..+++|+.+.+.
T Consensus 78 ---------~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 ---------SNCTNLKNIDIP 89 (129)
T ss_dssp ---------TT-TTECEEEET
T ss_pred ---------cccccccccccC
Confidence 235566666664
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.97 E-value=1.6 Score=40.46 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCC-ccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 59 LMQHIQEFVEGEKFLLVLDDVWNED-YCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 59 ~~~~~~~~l~~~r~LlvlDdv~~~~-~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
..-.+.+.+-.++=++++|.....- ......+...+.....+..||++|.+.+...
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 3344566666777889999974321 1222233333332223677888888877654
No 253
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.79 E-value=1.8 Score=44.31 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=31.1
Q ss_pred CccHHHHHHHHhcChhhhccC----CceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF----EKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|.+++........+ ..++||+....+++..+.+. ++.+
T Consensus 112 GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 112 GSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred CCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 899999999998742222111 37899999988887766543 4444
No 254
>CHL00176 ftsH cell division protein; Validated
Probab=88.78 E-value=2.1 Score=48.07 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=53.2
Q ss_pred HHHHcCCceEEEEEeCCCCCC----------ccCchhhHhh----hcc--CCCCCEEEEEecchhhhhh--hCC---cCe
Q 039822 63 IQEFVEGEKFLLVLDDVWNED----------YCKWEPFYYC----LKN--CLYGSKILITTRKETVACI--MGS---TDV 121 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv~~~~----------~~~~~~~~~~----l~~--~~~~s~iivTtR~~~~~~~--~~~---~~~ 121 (711)
+.+..+..+++|++|+++.-. .......... +.. ...+-.||.||...+..+. ..+ ...
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 344445678999999994321 0111122222 211 2235567777766544332 111 357
Q ss_pred EECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCC
Q 039822 122 ISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKG 165 (711)
Q Consensus 122 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 165 (711)
+.++..+.++-.++++..+..... . + ......+++.+.|
T Consensus 348 I~v~lPd~~~R~~IL~~~l~~~~~-~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHARNKKL-S--P--DVSLELIARRTPG 386 (638)
T ss_pred EEECCCCHHHHHHHHHHHHhhccc-c--h--hHHHHHHHhcCCC
Confidence 888888888888888877643211 1 1 1224557777776
No 255
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.72 E-value=4.4 Score=38.10 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=26.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~ 47 (711)
|+||||.+.+++. +....=..+..++..... ...+-++..++.++
T Consensus 11 GvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 11 GVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp TSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 9999998888887 344333467788765433 23344444555554
No 256
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.71 E-value=0.64 Score=53.15 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=50.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCce-EEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEK-FLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r-~LlvlDdv 79 (711)
|+|||.||++++. -+-+..+..+-|+.++... ..++.+..+ .....+....+-+.+++++ ..|.||||
T Consensus 601 gvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e--------vskligsp~-gyvG~e~gg~LteavrrrP~sVVLfdeI 669 (898)
T KOG1051|consen 601 GVGKTELAKALAE--YVFGSEENFIRLDMSEFQE--------VSKLIGSPP-GYVGKEEGGQLTEAVKRRPYSVVLFEEI 669 (898)
T ss_pred chhHHHHHHHHHH--HHcCCccceEEechhhhhh--------hhhccCCCc-ccccchhHHHHHHHHhcCCceEEEEech
Confidence 8999999999998 5555555566665554222 233323322 2222344446777777775 57779999
Q ss_pred CCCCccCchhhHhhhc
Q 039822 80 WNEDYCKWEPFYYCLK 95 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~ 95 (711)
+..++.....+...+.
T Consensus 670 EkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 670 EKAHPDVLNILLQLLD 685 (898)
T ss_pred hhcCHHHHHHHHHHHh
Confidence 7776655554544443
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.66 E-value=0.65 Score=47.05 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=44.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++. .....=..++||+..+.++.. .+++++.... +....++....+....+ +.--++
T Consensus 65 GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lI 137 (321)
T TIGR02012 65 SSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDII 137 (321)
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEE
Confidence 8999999999887 333333467899888766653 2344432210 11233445555555554 446689
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|-|
T Consensus 138 VIDSv 142 (321)
T TIGR02012 138 VVDSV 142 (321)
T ss_pred EEcch
Confidence 99998
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.50 E-value=2.3 Score=49.86 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=62.2
Q ss_pred CccHHHHHHHHhcChhhhc-----cC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEE
Q 039822 1 GIGKTTLAQLAYNNDDVKN-----HF-EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~-----~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~L 73 (711)
|+|||++|..++. ++.. .. ...+|. ++ .. ..+.+... ..+.++..+.+.+.+ ..++.+
T Consensus 210 GvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l~----~~-------~l~ag~~~-~ge~e~rl~~i~~~~~~~~~~I 274 (821)
T CHL00095 210 GVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-LD----IG-------LLLAGTKY-RGEFEERLKRIFDEIQENNNII 274 (821)
T ss_pred CCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-ee----HH-------HHhccCCC-ccHHHHHHHHHHHHHHhcCCeE
Confidence 8999999999988 3321 11 233442 11 11 11112222 123444444444433 356899
Q ss_pred EEEeCCCC----C---CccCchhhHhhhccCCCCCEEEEEecchhhhh------hh-CCcCeEECCCCChhhHHHHHHHH
Q 039822 74 LVLDDVWN----E---DYCKWEPFYYCLKNCLYGSKILITTRKETVAC------IM-GSTDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 74 lvlDdv~~----~---~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~------~~-~~~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
|++|++.. . ...+...+..+....+ .-++|-+|....... .+ .....+.++..+.++...+++..
T Consensus 275 LfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 99999821 0 0011222322222222 245555555443321 11 22457889999999988888643
No 259
>PRK09354 recA recombinase A; Provisional
Probab=88.39 E-value=0.74 Score=47.10 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=45.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSA-----PDVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++.. ....=..++||+..+.+++. .+++++... .+....++....+...++ +.--+|
T Consensus 70 GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lI 142 (349)
T PRK09354 70 SSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLI 142 (349)
T ss_pred CCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEE
Confidence 79999999998873 33333578899988877763 334443221 011234445555555554 345689
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|-|
T Consensus 143 VIDSv 147 (349)
T PRK09354 143 VVDSV 147 (349)
T ss_pred EEeCh
Confidence 99998
No 260
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.29 E-value=0.14 Score=45.25 Aligned_cols=81 Identities=23% Similarity=0.207 Sum_probs=41.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ .... ...-+.++...+..++....--. .... ...+ ......+ .+..++|||++.
T Consensus 9 G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~~~-~~l~~a~-----~~~~il~lDEin 75 (139)
T PF07728_consen 9 GTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF-EFKD-GPLVRAM-----RKGGILVLDEIN 75 (139)
T ss_dssp SSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTT-CEEE--CCCTTH-----HEEEEEEESSCG
T ss_pred CCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccc-cccc-ccccccc-----cceeEEEECCcc
Confidence 8999999999997 4411 23345666767766554332211 0000 0000 0000000 178999999996
Q ss_pred CCCccCchhhHhhh
Q 039822 81 NEDYCKWEPFYYCL 94 (711)
Q Consensus 81 ~~~~~~~~~~~~~l 94 (711)
....+.+..+...+
T Consensus 76 ~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 76 RAPPEVLESLLSLL 89 (139)
T ss_dssp G--HHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55554455554443
No 261
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.27 E-value=2.9 Score=39.72 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=47.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc--CCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV--EGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~r~LlvlDd 78 (711)
|.|||+|++++.+ ++....-.. |.+.. .+... ...+.+.| +..||+|..||
T Consensus 95 GtGKSSLVKA~~~--e~~~~glrL--VEV~k----------------------~dl~~-Lp~l~~~Lr~~~~kFIlFcDD 147 (287)
T COG2607 95 GTGKSSLVKALLN--EYADEGLRL--VEVDK----------------------EDLAT-LPDLVELLRARPEKFILFCDD 147 (287)
T ss_pred CCChHHHHHHHHH--HHHhcCCeE--EEEcH----------------------HHHhh-HHHHHHHHhcCCceEEEEecC
Confidence 7899999999888 555554332 21111 11111 12233333 35799999999
Q ss_pred C-CCCCccCchhhHhhhccCC---CCCEEEEEecch
Q 039822 79 V-WNEDYCKWEPFYYCLKNCL---YGSKILITTRKE 110 (711)
Q Consensus 79 v-~~~~~~~~~~~~~~l~~~~---~~s~iivTtR~~ 110 (711)
. .+.....+..++..+..+- +..-++..|.++
T Consensus 148 LSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 148 LSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 7 2334456777777665432 444666666554
No 262
>PRK07261 topology modulation protein; Provisional
Probab=88.19 E-value=0.86 Score=41.84 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||||+++..
T Consensus 10 GsGKSTla~~l~~ 22 (171)
T PRK07261 10 GSGKSTLARKLSQ 22 (171)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 263
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.17 E-value=2.7 Score=38.92 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCc-eEEEEEeCCC---CCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 59 LMQHIQEFVEGE-KFLLVLDDVW---NEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 59 ~~~~~~~~l~~~-r~LlvlDdv~---~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
.....++.+... -=|+|||.+- +...-+.+.+...+.....+..||+|=|+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 344455555544 4599999972 222344556666676666788999999986
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=87.82 E-value=2.8 Score=38.21 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceE---------EEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRI---------WVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~---------wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r 71 (711)
|.|||||++.++... ....+.+ ++.-........+...+... .....+..+...-.+.+.+-.++
T Consensus 37 GsGKSTLl~~l~G~~---~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 37 GTGKSSLFRALAGLW---PWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred CCCHHHHHHHHhcCC---CCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999842 1122222 22211111111223332210 11222333444445666666777
Q ss_pred EEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 72 FLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 72 ~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
=++++|..... +......+...+... +..||++|.+.....
T Consensus 111 ~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 111 KFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 88899986322 112222333333332 456888887766543
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.74 E-value=2.4 Score=37.60 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=50.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|.|||||++.++.. .....+.+|+.-.. .+.- ..+.+..+...-.+.+.+-.+.=++++|+..
T Consensus 36 GsGKStLl~~l~G~---~~~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 36 GAGKSTLLKLIAGE---LEPDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCCHHHHHHHHcCC---CCCCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 89999999999973 22334555553110 0000 0002222333334566666677788999973
Q ss_pred CC-CccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 81 NE-DYCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 81 ~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
.. +......+...+... +..||++|.+.+...
T Consensus 99 ~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 99 NHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 22 222333344444333 346888887765553
No 266
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.67 E-value=0.4 Score=28.01 Aligned_cols=19 Identities=47% Similarity=0.826 Sum_probs=11.2
Q ss_pred cCCcEEecCCCCCCccCCcc
Q 039822 391 YNLQRLDVTYCKNLEELPPG 410 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~ 410 (711)
.+|++|+|++|. ++.+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666654 6666554
No 267
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.67 E-value=0.4 Score=28.01 Aligned_cols=19 Identities=47% Similarity=0.826 Sum_probs=11.2
Q ss_pred cCCcEEecCCCCCCccCCcc
Q 039822 391 YNLQRLDVTYCKNLEELPPG 410 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~ 410 (711)
.+|++|+|++|. ++.+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666654 6666554
No 268
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.52 E-value=0.59 Score=42.79 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=68.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD---VAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+|||++|.+++. +... .++++......+. +..+.|.......... .....+....+.....+.. ++++|
T Consensus 11 ~sGKS~~a~~l~~--~~~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~-~VlID 83 (170)
T PRK05800 11 RSGKSRFAERLAA--QSGL---QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGR-CVLVD 83 (170)
T ss_pred CccHHHHHHHHHH--HcCC---CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCC-EEEeh
Confidence 7999999999986 2211 3456655554443 4555554444322211 1112233333444333333 68889
Q ss_pred CC--CCC-----Cc-cCchh----hHhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 78 DV--WNE-----DY-CKWEP----FYYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 78 dv--~~~-----~~-~~~~~----~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+ |-. +. +.|.. +...+.. .+..+|+|+-.. -.+..+.++..+.|+....
T Consensus 84 ~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~--~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~d~lG---- 145 (170)
T PRK05800 84 CLTTWVTNLLFEEGEEAIAAEIDALLAALQQ--LPAKIILVTNEV------------GMGIVPEYRLGRHFRDIAG---- 145 (170)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHc--CCCCEEEEEcCC------------cccccCCCHHHHHHHHHHH----
Confidence 86 210 10 11222 2222222 355566666322 1233345566667766542
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHH
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
..+..+...|.++.....|+|+-+
T Consensus 146 -~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 146 -RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred -HHHHHHHHHCCEEEEEeCCCcEec
Confidence 122344444444445556777643
No 269
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=87.49 E-value=2.1 Score=43.69 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=31.0
Q ss_pred CccHHHHHHHHhcChhhhccC----CceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF----EKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||+++.+++......... ..++||+....+++..+.+. ++.+
T Consensus 105 g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~ 153 (310)
T TIGR02236 105 GSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEAR 153 (310)
T ss_pred CCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHc
Confidence 899999999998742221111 27899999988887765543 4444
No 270
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=5.8 Score=39.51 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=41.0
Q ss_pred CccHHHHHHHHhcCh--hhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCce--EEEEE
Q 039822 1 GIGKTTLAQLAYNND--DVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEK--FLLVL 76 (711)
Q Consensus 1 GiGKTtla~~~~~~~--~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r--~Llvl 76 (711)
|.|||+|++++++.- +....|....-+.++.. ++.++-..+. ..-+....++|.+.++.+. +.+.+
T Consensus 187 GTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsES--gKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 187 GTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSES--GKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred CCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhhh--hhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 899999999999963 44555655555554431 1222211111 2344566667777776554 45568
Q ss_pred eCC
Q 039822 77 DDV 79 (711)
Q Consensus 77 Ddv 79 (711)
|.|
T Consensus 257 DEV 259 (423)
T KOG0744|consen 257 DEV 259 (423)
T ss_pred HHH
Confidence 888
No 271
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=1.1 Score=46.14 Aligned_cols=70 Identities=17% Similarity=0.355 Sum_probs=45.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD-----VAEFQSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~r~Llv 75 (711)
|||||||..+++. +.+..- .++||+-.+.....++. +.+++..... +.+.++..+.+.+ .+.-++|
T Consensus 103 GIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~QiklR---A~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~p~lvV 173 (456)
T COG1066 103 GIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQIKLR---ADRLGLPTNNLYLLAETNLEDIIAELEQ---EKPDLVV 173 (456)
T ss_pred CCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHHHHH---HHHhCCCccceEEehhcCHHHHHHHHHh---cCCCEEE
Confidence 8999999999998 666665 88999876655444333 4445432222 2334444443333 6788999
Q ss_pred EeCC
Q 039822 76 LDDV 79 (711)
Q Consensus 76 lDdv 79 (711)
+|-+
T Consensus 174 IDSI 177 (456)
T COG1066 174 IDSI 177 (456)
T ss_pred Eecc
Confidence 9998
No 272
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=2.3 Score=42.84 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=79.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|.|||-||++|++ +....| +.+.. .++.++.-+.. ....+.+.+.-+ .....|++|.+
T Consensus 195 GTGKTLLAkAVA~--~T~AtF-----Irvvg--------SElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 195 GTGKTLLAKAVAN--QTDATF-----IRVVG--------SELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred CCcHHHHHHHHHh--ccCceE-----EEecc--------HHHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEech
Confidence 8999999999999 555444 32221 12223322222 234455555555 45899999998
Q ss_pred CCCCc--------------cCchhhHhhhccCC--CCCEEEEEecchhhhhhh--CC---cCeEECCCCChhhHHHHHHH
Q 039822 80 WNEDY--------------CKWEPFYYCLKNCL--YGSKILITTRKETVACIM--GS---TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~~~--------------~~~~~~~~~l~~~~--~~s~iivTtR~~~~~~~~--~~---~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+.... ..+-+++..+..+. ..-|||..|...++.+.. .+ ...++++.-+.+-=.++|.-
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 32111 11222233333332 346999999888776532 23 45777774444444555654
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh----HHHHHHHHHh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP----LAAKTIASLL 177 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~a~~l 177 (711)
+.-.-.- ...-++ ..+++.+.|.. .|+.+=|+.+
T Consensus 334 HtrkM~l-~~dvd~----e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 334 HTRKMNL-ADDVDL----ELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred HhhhccC-ccCcCH----HHHHHhcCCCchHHHHHHHHHHhHH
Confidence 4422111 111222 44666676664 4455555554
No 273
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.15 E-value=2 Score=41.76 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=43.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC--------------------CChhhHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSA--------------------PDVAEFQSLM 60 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------------~~~~~~~~~~ 60 (711)
|+|||++|.++... ....=..++|++..+. +.++.+.+.+ ++... ......+...
T Consensus 35 GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~~~-~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll 109 (234)
T PRK06067 35 GTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQMES-VKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLL 109 (234)
T ss_pred CCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHHHH-CCCChhHHHhCCCceEEeccccccccCcchHHHHH
Confidence 89999999999763 2222246889988654 3444444322 22110 0012234555
Q ss_pred HHHHHHcCC-ceEEEEEeCCC
Q 039822 61 QHIQEFVEG-EKFLLVLDDVW 80 (711)
Q Consensus 61 ~~~~~~l~~-~r~LlvlDdv~ 80 (711)
..+.+.++. +.-++|+|.+.
T Consensus 110 ~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 110 ELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHhcCCCEEEEecHH
Confidence 666666653 45589999974
No 274
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=86.84 E-value=22 Score=37.37 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCCCccCchhhHh-h------hccCCCCCEEEEEecchhhhhhh------CCcCeEECCCCChhhHHHHHH
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYY-C------LKNCLYGSKILITTRKETVACIM------GSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~-~------l~~~~~~s~iivTtR~~~~~~~~------~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
|=+||+||.-..... ..+.. . -.-.++--+||+.|-+....... .+...+.+...+.+-|.+...
T Consensus 149 ~PVVVIdnF~~k~~~--~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE--NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred CCEEEEcchhccCcc--cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 458999998554321 22211 1 01123456899999876544332 234678889999999999998
Q ss_pred HHhcCCCCcc------------hh----hhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHH
Q 039822 138 SLAFFGNSME------------ER----ENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEK 184 (711)
Q Consensus 138 ~~~~~~~~~~------------~~----~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~ 184 (711)
.+.....+.. .. .....-....++..||-=.-|..+++.++...+++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8875431110 00 11233356688899999999999999999887654
No 275
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=86.75 E-value=7.2 Score=39.01 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCCChhhHHHHHH
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
.+++-++|+|+++..+....+.++..+..-..++.+|++|.+. .+...+ ..-+.+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3566789999998888778888888877666667777777554 444433 2346777766 5555555554
No 276
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.69 E-value=3.6 Score=48.45 Aligned_cols=123 Identities=13% Similarity=0.096 Sum_probs=60.5
Q ss_pred CccHHHHHHHHhcChhhhccC------Cc-eEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC--Cce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF------EK-RIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE--GEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F------~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~--~~r 71 (711)
|+|||++|..+++ ++...+ .. +++++++. +. .+... ..+.+.....+.+.+. +++
T Consensus 204 GvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~~------l~-------a~~~~-~g~~e~~l~~~l~~~~~~~~~ 267 (852)
T TIGR03346 204 GVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMGA------LI-------AGAKY-RGEFEERLKAVLNEVTKSEGQ 267 (852)
T ss_pred CCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHHH------Hh-------hcchh-hhhHHHHHHHHHHHHHhcCCC
Confidence 8999999999988 443321 22 22332211 10 01111 1233333333333332 468
Q ss_pred EEEEEeCCCCCC-----c--cCchhhHhhhccCCCCCEEEEEecchhhhh-------hhCCcCeEECCCCChhhHHHHHH
Q 039822 72 FLLVLDDVWNED-----Y--CKWEPFYYCLKNCLYGSKILITTRKETVAC-------IMGSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 72 ~LlvlDdv~~~~-----~--~~~~~~~~~l~~~~~~s~iivTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
.+|++|++..-. . .+...+..+....+ .-++|-+|.....-. .....+.+.++..+.++...++.
T Consensus 268 ~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~ 346 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILR 346 (852)
T ss_pred eEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHH
Confidence 999999983211 0 01111211111222 235555555443211 11224578899999999999887
Q ss_pred HHh
Q 039822 138 SLA 140 (711)
Q Consensus 138 ~~~ 140 (711)
...
T Consensus 347 ~~~ 349 (852)
T TIGR03346 347 GLK 349 (852)
T ss_pred HHH
Confidence 553
No 277
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=86.47 E-value=2.2 Score=45.53 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=44.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCCh--h--hHHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTG--------SAPDV--A--EFQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~--~--~~~~~~~~~~~~l 67 (711)
|+|||||+.++++... +.+-+.++++-+++.. ...++...+...-.. ..++. . ......-.+.+++
T Consensus 153 G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyf 231 (461)
T PRK12597 153 GVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYL 231 (461)
T ss_pred CCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999888422 2245667777777554 455666665543211 11110 0 0011122233443
Q ss_pred ---CCceEEEEEeCC
Q 039822 68 ---EGEKFLLVLDDV 79 (711)
Q Consensus 68 ---~~~r~LlvlDdv 79 (711)
+++++|+++|++
T Consensus 232 rd~~G~~VLl~~Dsl 246 (461)
T PRK12597 232 RDEEKEDVLLFIDNI 246 (461)
T ss_pred HHhcCCceEEEeccc
Confidence 489999999998
No 278
>PTZ00035 Rad51 protein; Provisional
Probab=86.38 E-value=2.8 Score=43.18 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=29.8
Q ss_pred CccHHHHHHHHhcChhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKN----HFEKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||+++..++...+... .=..++||+....+++..+ .++++.++
T Consensus 128 GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 128 RTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 8999999999875322211 1125679998887777764 44455543
No 279
>PHA00729 NTP-binding motif containing protein
Probab=86.32 E-value=1.6 Score=41.69 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||||..+++
T Consensus 27 GvGKT~LA~aLa~ 39 (226)
T PHA00729 27 GSGKTTYALKVAR 39 (226)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999998
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.30 E-value=1.9 Score=42.48 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=40.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||.++.+ +...+=-.++|+++. ++.+.+....... ....++.+.++ +-=||||||+.
T Consensus 115 G~GKThLa~Ai~~--~l~~~g~sv~f~~~~------el~~~Lk~~~~~~--------~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 115 GVGKTHLAIAIGN--ELLKAGISVLFITAP------DLLSKLKAAFDEG--------RLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred CCcHHHHHHHHHH--HHHHcCCeEEEEEHH------HHHHHHHHHHhcC--------chHHHHHHHhh-cCCEEEEeccc
Confidence 8999999999999 555333456677544 4555554444321 11112222222 23388999996
Q ss_pred CCCccCch
Q 039822 81 NEDYCKWE 88 (711)
Q Consensus 81 ~~~~~~~~ 88 (711)
-.....|.
T Consensus 178 ~~~~~~~~ 185 (254)
T COG1484 178 YEPFSQEE 185 (254)
T ss_pred CccCCHHH
Confidence 55444444
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.28 E-value=1.4 Score=39.99 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=55.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP--FDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|.|||||.+.++. ......+.+++.-... .+.....+ +.+.. ..+.+..+...-.+.+.+-.++-++++|+
T Consensus 36 GsGKSTLl~~i~G---~~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 36 GAGKSTLMKILSG---LYKPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred CCCHHHHHHHHhC---CCCCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 8999999999997 3334556666642211 11111111 11111 01122333444456666767788889999
Q ss_pred CCCC-CccCchhhHhhhccC-CCCCEEEEEecchhhhh
Q 039822 79 VWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVAC 114 (711)
Q Consensus 79 v~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~ 114 (711)
.... +......+...+... ..+..||++|.+.....
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7332 122233333333322 23667888888876443
No 282
>CHL00195 ycf46 Ycf46; Provisional
Probab=86.01 E-value=5 Score=43.55 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCCCCc--c---C---c----hhhHhhhccCCCCCEEEEEecchhhhh-hh---CC-cCeEECCCCChhh
Q 039822 69 GEKFLLVLDDVWNEDY--C---K---W----EPFYYCLKNCLYGSKILITTRKETVAC-IM---GS-TDVISVNVLSEME 131 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~--~---~---~----~~~~~~l~~~~~~s~iivTtR~~~~~~-~~---~~-~~~~~l~~L~~~e 131 (711)
..+++|++|+++..-. . + . ..+...+.....+--||.||...+..+ .+ +. ...+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 4689999999853110 0 0 0 111222222233445666776554322 21 11 4578888888899
Q ss_pred HHHHHHHHhcCCCCcc-hhhhHHHHHHHHHHhcCCCh
Q 039822 132 CWSVFESLAFFGNSME-ERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 132 a~~Lf~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 167 (711)
-.++|.....+..... ...+ ...+++.+.|..
T Consensus 397 R~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 8889987764432211 1112 345666666654
No 283
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=85.96 E-value=1.7 Score=44.06 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=41.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHHcCC-ceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD-----VAEFQSLMQHIQEFVEG-EKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~l~~-~r~Ll 74 (711)
|+||||||.++.. .....-..++||+..+..++. .+..++.+... .+..++....+.+.++. .--++
T Consensus 63 ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lV 135 (322)
T PF00154_consen 63 SSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLV 135 (322)
T ss_dssp TSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEE
T ss_pred CCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEE
Confidence 6899999999987 444444468899998877764 33444332111 12334555556666654 34588
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|-|
T Consensus 136 VvDSv 140 (322)
T PF00154_consen 136 VVDSV 140 (322)
T ss_dssp EEE-C
T ss_pred EEecC
Confidence 99998
No 284
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.95 E-value=5.9 Score=37.54 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHcCCceEEEEEeCCCCCCccCchhhHh---hhcc-CCCCCEEEEEecchhhhhhhCCcCeEE
Q 039822 62 HIQEFVEGEKFLLVLDDVWNEDYCKWEPFYY---CLKN-CLYGSKILITTRKETVACIMGSTDVIS 123 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~~~~~~~~~~~---~l~~-~~~~s~iivTtR~~~~~~~~~~~~~~~ 123 (711)
++.+.+-=++-+.|||..++. -+.+++.. .+.. ..+++-++|.|-.++++....+..++-
T Consensus 154 EilQ~~~lePkl~ILDE~DSG--LDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSG--LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcC--ccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 344444445679999998443 34444332 1211 124777888888898988876654443
No 285
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.81 E-value=0.41 Score=28.06 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=13.9
Q ss_pred CCCccEEEEecCcchhhh
Q 039822 673 KTTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 673 ~~~L~~l~l~~c~~l~~~ 690 (711)
+++|+.|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888888774
No 286
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.65 E-value=5.1 Score=46.40 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=70.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||++|+++++ .....| +.+... .++...-+ +.+.....+.+ .-+..+.+|++|++
T Consensus 497 GtGKT~lakalA~--e~~~~f-----i~v~~~--------~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 497 GTGKTLLAKAVAT--ESGANF-----IAVRGP--------EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred CCCHHHHHHHHHH--hcCCCE-----EEEehH--------HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 8999999999998 333222 222210 11111111 11222233333 22456799999998
Q ss_pred CCCC--------cc----CchhhHhhhcc--CCCCCEEEEEecchhhhhhh--C---CcCeEECCCCChhhHHHHHHHHh
Q 039822 80 WNED--------YC----KWEPFYYCLKN--CLYGSKILITTRKETVACIM--G---STDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 80 ~~~~--------~~----~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~~--~---~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
+.-- .. ....+...+.. ...+.-||.||...+..+.. . -...+.++..+.++-.++|+...
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 4210 00 01112222221 12344566677665544321 1 14578888888888888887654
Q ss_pred cCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 141 FFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
.+... ....+ ...+++.+.|.-
T Consensus 636 ~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 636 RSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred cCCCC-CccCC----HHHHHHHcCCCC
Confidence 32211 11112 344666777654
No 287
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.64 E-value=3 Score=47.82 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=63.0
Q ss_pred CccHHHHHHHHhcChhhh-cc----C-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEE
Q 039822 1 GIGKTTLAQLAYNNDDVK-NH----F-EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFL 73 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~----F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~L 73 (711)
|+|||++|+.++. ++. .. + +..+|.. +.. .+ +.+... ..+.+...+.+.+.+ +.++.+
T Consensus 217 GvGKT~lae~la~--~i~~~~vP~~l~~~~~~~l-----~~~----~l---laG~~~-~Ge~e~rl~~l~~~l~~~~~~I 281 (758)
T PRK11034 217 GVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSL-----DIG----SL---LAGTKY-RGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_pred CCCHHHHHHHHHH--HHHhcCCCchhcCCeEEec-----cHH----HH---hcccch-hhhHHHHHHHHHHHHHhcCCCE
Confidence 8999999999987 331 11 1 2333321 111 11 111111 123333433333333 345789
Q ss_pred EEEeCCCCC--------CccCchhhHhhhccCCCCCEEEEEecchhhhhh-------hCCcCeEECCCCChhhHHHHHHH
Q 039822 74 LVLDDVWNE--------DYCKWEPFYYCLKNCLYGSKILITTRKETVACI-------MGSTDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 74 lvlDdv~~~--------~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 138 (711)
|++|++..- ...+...+..++...+ .-++|-+|........ ....+.+.+++.+.++..+++..
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~ 360 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING 360 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 999998321 1112222233322222 3455555554432211 12246899999999999999975
Q ss_pred Hh
Q 039822 139 LA 140 (711)
Q Consensus 139 ~~ 140 (711)
..
T Consensus 361 ~~ 362 (758)
T PRK11034 361 LK 362 (758)
T ss_pred HH
Confidence 53
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=85.52 E-value=2.6 Score=38.86 Aligned_cols=100 Identities=10% Similarity=-0.128 Sum_probs=49.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||||++.++.- .....+.+++.-.. ... ..+....+..+...-.+.+.+-.+.=++++|...
T Consensus 35 GsGKSTLl~~l~Gl---~~p~~G~i~~~g~~-i~~-----------~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 35 GTGKTTAVKILAGQ---LIPNGDNDEWDGIT-PVY-----------KPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CChHHHHHHHHHcC---CCCCCcEEEECCEE-EEE-----------EcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 89999999999872 22334444432100 000 0000002222334444566666777888999973
Q ss_pred CCC-ccCchhhHhhhccC-CC-CCEEEEEecchhhhhh
Q 039822 81 NED-YCKWEPFYYCLKNC-LY-GSKILITTRKETVACI 115 (711)
Q Consensus 81 ~~~-~~~~~~~~~~l~~~-~~-~s~iivTtR~~~~~~~ 115 (711)
..- ......+...+... .. +..||++|-+......
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 321 12222233333221 12 3567788877655543
No 289
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.38 E-value=8.6 Score=42.21 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=37.3
Q ss_pred CCEEEEEecchhhhh-hh-C---CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCC-hHHHHH
Q 039822 100 GSKILITTRKETVAC-IM-G---STDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGL-PLAAKT 172 (711)
Q Consensus 100 ~s~iivTtR~~~~~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~ 172 (711)
+..||.||...+..+ .+ . -...+.++..+.++-.++|.......... ...+ ...+++.+.|. +-.|..
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~----l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD----LKAVARRTPGFSGADLAN 266 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh----HHHHHHhCCCCCHHHHHH
Confidence 445666776543222 11 1 24578888888888888887765332211 1111 34677777764 333433
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=84.94 E-value=2 Score=39.51 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchhhhh
Q 039822 59 LMQHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVAC 114 (711)
Q Consensus 59 ~~~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~ 114 (711)
..-.+.+.+-.+.=++++|+.... +......+...+... ..|..||++|.+.+...
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333455666667778899997432 112222233333221 23667888888876654
No 291
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.70 E-value=1.2 Score=42.04 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=49.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH-HHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF-RIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+||||++..+.. .+.......+++-.. +.... .-...+..+-.. ..+.....+.+++.++...=.+++|.+
T Consensus 11 GSGKTTll~~ll~--~~~~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 11 GSGKSTTLAAMID--YINKNKTHHILTIED-PIEFVHESKRSLINQREV----GLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred CCCHHHHHHHHHH--HhhhcCCcEEEEEcC-CccccccCccceeeeccc----CCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8999999998877 444444444444222 11110 000011111000 111223445567777767779999999
Q ss_pred CCCCccCchhhHhhhccCCCCCEEEEEecchhh
Q 039822 80 WNEDYCKWEPFYYCLKNCLYGSKILITTRKETV 112 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~ 112 (711)
.+ .+.+...... ...|..++.|+-..++
T Consensus 84 rd--~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 84 RD--LETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CC--HHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 43 3333333222 2235556666654443
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.53 E-value=2.9 Score=40.66 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=62.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-----CCCHHHHHHHHHHHhcCCC------CC-hhhHHHHHHHHHHHcC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-----PFDEFRIARSIIEALTGSA------PD-VAEFQSLMQHIQEFVE 68 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~-~~~~~~~~~~~~~~l~ 68 (711)
|+||||+++.+.. .-+.-.+.+++.-.. .....+...+++...+... +. .+..+...-.|.+.+.
T Consensus 49 G~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 49 GCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred CCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 8999999999996 444455666665222 1223344555666554321 11 1222333345778888
Q ss_pred CceEEEEEeCCCCCCcc-CchhhHhhhcc--CCCCCEEEEEecchhhhhhh
Q 039822 69 GEKFLLVLDDVWNEDYC-KWEPFYYCLKN--CLYGSKILITTRKETVACIM 116 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~-~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~~ 116 (711)
-+.-++|.|..-+.-.. .-+++...+.+ .-.|-..+..|-+-.++..+
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 89999999996332211 11223222221 12355677777776666554
No 293
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=84.43 E-value=3.6 Score=38.94 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=30.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 44 (711)
|+||||.++.+++ ........++|..-.......+..++++.
T Consensus 13 GaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~ll 54 (208)
T COG0125 13 GAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELLL 54 (208)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHHc
Confidence 8999999999998 66666657777766665555555555544
No 294
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.38 E-value=5.6 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=17.1
Q ss_pred cCeEECCCCChhhHHHHHHHHh
Q 039822 119 TDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 119 ~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
...+++.+++.++-.+++.+..
T Consensus 484 ~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 484 MEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eeEEecCCCCHHHHHHHHHHHH
Confidence 3578899999888888886654
No 295
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.24 E-value=5.2 Score=40.12 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=72.9
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCCCH-HHHHHHHHHHh----cCCCCChhhHHHHHHHHHHHcCC-----
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPFDE-FRIARSIIEAL----TGSAPDVAEFQSLMQHIQEFVEG----- 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~-~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~~~l~~----- 69 (711)
|+|||++......+ ...|. ..+-|.....-.. .-.++.|.+|+ ........+..+....+-+.|+.
T Consensus 59 gsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t 135 (408)
T KOG2228|consen 59 GSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETT 135 (408)
T ss_pred CCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCC
Confidence 89999988777764 23332 3445554433322 22344444444 32222234445555666666643
Q ss_pred -ceEEEEEeCCCCCCccCchhhHhhh-----ccCCCCCEEEEEecchhhh-------hhhCCcCeEECCCCChhhHHHHH
Q 039822 70 -EKFLLVLDDVWNEDYCKWEPFYYCL-----KNCLYGSKILITTRKETVA-------CIMGSTDVISVNVLSEMECWSVF 136 (711)
Q Consensus 70 -~r~LlvlDdv~~~~~~~~~~~~~~l-----~~~~~~s~iivTtR~~~~~-------~~~~~~~~~~l~~L~~~ea~~Lf 136 (711)
.++..|+|.++-.-+..-..+...+ ....|-|-|-+|||-.... ....-..++-.++++..+...++
T Consensus 136 ~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~ 215 (408)
T KOG2228|consen 136 SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLY 215 (408)
T ss_pred CceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHH
Confidence 3688888876321111111111111 1234677888999964222 22222336667888888888888
Q ss_pred HHHh
Q 039822 137 ESLA 140 (711)
Q Consensus 137 ~~~~ 140 (711)
+...
T Consensus 216 r~ll 219 (408)
T KOG2228|consen 216 RKLL 219 (408)
T ss_pred HHHh
Confidence 8775
No 296
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=83.86 E-value=3.1 Score=44.04 Aligned_cols=79 Identities=11% Similarity=0.182 Sum_probs=44.5
Q ss_pred CccHHHHHHHHhcChhhhc--cCC---------ceEEEEeCCCCCHHHHHHHHHHHhc-CC--------CCC--h-----
Q 039822 1 GIGKTTLAQLAYNNDDVKN--HFE---------KRIWVCVSDPFDEFRIARSIIEALT-GS--------APD--V----- 53 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~--------~~~--~----- 53 (711)
|+|||+|+.++++..+... ..| .+++.-+++.....+.+...+..-+ .. .++ .
T Consensus 151 GvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a 230 (466)
T TIGR01040 151 GLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIIT 230 (466)
T ss_pred CCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 8999999999887432100 012 4567778877666665555555443 11 111 0
Q ss_pred hhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 54 AEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 54 ~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
........+..+.-+++++|+++||+
T Consensus 231 ~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 231 PRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred HhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 11111223333333578999999998
No 297
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.77 E-value=0.68 Score=27.04 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=18.0
Q ss_pred CccCceeccCCCCccccccccC
Q 039822 414 LRKLMYLDNRWTHSLRFLSVGI 435 (711)
Q Consensus 414 L~~L~~L~l~~~~~l~~lp~~i 435 (711)
|++|++|++++| .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999999 889888764
No 298
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.77 E-value=0.68 Score=27.04 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=18.0
Q ss_pred CccCceeccCCCCccccccccC
Q 039822 414 LRKLMYLDNRWTHSLRFLSVGI 435 (711)
Q Consensus 414 L~~L~~L~l~~~~~l~~lp~~i 435 (711)
|++|++|++++| .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999999 889888764
No 299
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=83.66 E-value=3.7 Score=43.65 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=45.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCC--hh-----hHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTG--------SAPD--VA-----EFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~--~~-----~~~~~~~~~~ 64 (711)
|+|||+|+.++..... +.+-+.++|+-+++... ..++.+.+...-.. ...+ .. ...-...+..
T Consensus 148 G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyf 226 (449)
T TIGR03305 148 GVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYF 226 (449)
T ss_pred CCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999887422 22336778888876554 55666665543211 1111 00 1111122233
Q ss_pred HHcCCceEEEEEeCC
Q 039822 65 EFVEGEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l~~~r~LlvlDdv 79 (711)
+.-+++++|+++||+
T Consensus 227 rd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 227 RDDEKQDVLLLIDNI 241 (449)
T ss_pred HHhcCCceEEEecCh
Confidence 333578999999998
No 300
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.55 E-value=4.4 Score=46.97 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 120 DVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 120 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
..+.++..+.++-.+++......... ..+ .....+++.+.|.-
T Consensus 339 ~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 339 REIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCC
Confidence 46777877888888888754321111 101 12456777777764
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.27 E-value=2.9 Score=41.94 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=37.0
Q ss_pred CccHHHHHHHHhcChhhhcc--CCceEEEEeCCCCC-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNH--FEKRIWVCVSDPFD-EFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~--F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||++.+++. ..... -..+..|+...... ....+....+.++.......+..+..+.+.+ +.+ .=+|++|
T Consensus 204 GvGKTTt~~kLa~--~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~~-~d~vliD 279 (282)
T TIGR03499 204 GVGKTTTLAKLAA--RFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LRD-KDLILID 279 (282)
T ss_pred CCCHHHHHHHHHH--HHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-ccC-CCEEEEe
Confidence 8999999999987 33322 23567777554322 2222222233333222112233333333333 333 4577777
Q ss_pred CC
Q 039822 78 DV 79 (711)
Q Consensus 78 dv 79 (711)
..
T Consensus 280 t~ 281 (282)
T TIGR03499 280 TA 281 (282)
T ss_pred CC
Confidence 54
No 302
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.21 E-value=2.8 Score=43.76 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||||+.+++. .....-..++||+..+.
T Consensus 92 G~GKStLllq~a~--~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 92 GIGKSTLLLQVAA--RLAKRGGKVLYVSGEES 121 (372)
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEECCcC
Confidence 8999999999997 44444456888876543
No 303
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.09 E-value=2.6 Score=38.74 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=18.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+||||++..++. .....=..++.++..
T Consensus 10 G~GKTt~~~~la~--~~~~~g~~v~~i~~D 37 (173)
T cd03115 10 GVGKTTTAAKLAL--YLKKKGKKVLLVAAD 37 (173)
T ss_pred CCCHHHHHHHHHH--HHHHCCCcEEEEEcC
Confidence 8999999999987 444332245555544
No 304
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.04 E-value=0.62 Score=39.79 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 9 gsGKST~a~~La~ 21 (121)
T PF13207_consen 9 GSGKSTLAKELAE 21 (121)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 305
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=82.91 E-value=0.42 Score=40.80 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=15.0
Q ss_pred CccHHHHHHHHhcChhhhccCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE 22 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~ 22 (711)
|+|||++|+.++. .+...|.
T Consensus 9 G~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 9 GVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp -HHHHHHHHHHHH--HTT--EE
T ss_pred ccHHHHHHHHHHH--HcCCcee
Confidence 8999999999998 6777774
No 306
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.67 E-value=1.7 Score=49.80 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=43.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDdv 79 (711)
|+|||++|+.++. ... ...+.++.+...... . ...+.+..+.-... +....+.+.++ ....+++||++
T Consensus 498 GvGKT~lAk~LA~--~l~---~~~i~id~se~~~~~----~-~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 498 GVGKTEVTVQLSK--ALG---IELLRFDMSEYMERH----T-VSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CCCHHHHHHHHHH--HhC---CCcEEeechhhcccc----c-HHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccH
Confidence 8999999999987 332 223444444322211 1 23332322211100 11112223333 34579999999
Q ss_pred CCCCccCchhhHhhhc
Q 039822 80 WNEDYCKWEPFYYCLK 95 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~ 95 (711)
.....+.++.+...+.
T Consensus 567 eka~~~v~~~LLq~ld 582 (758)
T PRK11034 567 EKAHPDVFNLLLQVMD 582 (758)
T ss_pred hhhhHHHHHHHHHHHh
Confidence 8777766776666554
No 307
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=82.65 E-value=5.7 Score=35.56 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=25.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC-----CCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS-----DPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~-----~~~~~~~~~~~i~~~l 46 (711)
|+||||+|.++.+ -|.. |-.++ .. ....+.+.+++.+
T Consensus 9 GCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 9 GCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 8999999999876 3433 44332 23 5667777777777
No 308
>PRK08233 hypothetical protein; Provisional
Probab=82.54 E-value=2.7 Score=38.94 Aligned_cols=13 Identities=46% Similarity=0.491 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 13 GsGKtTla~~L~~ 25 (182)
T PRK08233 13 GGGKTTLTERLTH 25 (182)
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 309
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=82.52 E-value=1.7 Score=41.15 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.7
Q ss_pred CceEEEEEeCCCCCCc-cC----chhhHhhhccCCCCCEEEEEecchhhhhhhC
Q 039822 69 GEKFLLVLDDVWNEDY-CK----WEPFYYCLKNCLYGSKILITTRKETVACIMG 117 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~-~~----~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~ 117 (711)
.++-|+++|....... .+ ...+...+... +..+|++|-+.+++....
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhh
Confidence 5678999999844321 11 11223333332 789999999988877654
No 310
>PRK13695 putative NTPase; Provisional
Probab=82.33 E-value=1.4 Score=40.66 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+||||+++.+++.
T Consensus 10 G~GKTTll~~i~~~ 23 (174)
T PRK13695 10 GVGKTTLVLKIAEL 23 (174)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998873
No 311
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.29 E-value=6.1 Score=38.56 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred CccHHHHHHHHhcChhhhc--c------C---C-ceEEEEeCCCCC-HHHHHHHHHHHhcCCC------------CCh--
Q 039822 1 GIGKTTLAQLAYNNDDVKN--H------F---E-KRIWVCVSDPFD-EFRIARSIIEALTGSA------------PDV-- 53 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~--~------F---~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------------~~~-- 53 (711)
|+|||+||..++. .+.. . . . .+++++...+.+ ...-+..+...+.... ...
T Consensus 11 G~GKS~lal~la~--~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~~~~l~~ 88 (239)
T cd01125 11 GTGKSSLLLVLAL--AMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGRIQPISI 88 (239)
T ss_pred CCCHHHHHHHHHH--HHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccCCCceec
Confidence 8999999999987 3321 1 1 1 356666555443 3444444544332100 000
Q ss_pred -----hhHHHHHHHHHHHc-CCceEEEEEeCCCC------CCccCchhhHhhhcc--CCCCCEEEEEecchhhhh-----
Q 039822 54 -----AEFQSLMQHIQEFV-EGEKFLLVLDDVWN------EDYCKWEPFYYCLKN--CLYGSKILITTRKETVAC----- 114 (711)
Q Consensus 54 -----~~~~~~~~~~~~~l-~~~r~LlvlDdv~~------~~~~~~~~~~~~l~~--~~~~s~iivTtR~~~~~~----- 114 (711)
.........+.+.+ ..+.-++|+|-+-. .+......+...+.. ...|+.||+++-...-..
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~ 168 (239)
T cd01125 89 AREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDT 168 (239)
T ss_pred ccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCccc
Confidence 01122333333333 34567999997521 112223333333322 123677888776432111
Q ss_pred ---h------hC-CcCeEECCCCChhhHHHH
Q 039822 115 ---I------MG-STDVISVNVLSEMECWSV 135 (711)
Q Consensus 115 ---~------~~-~~~~~~l~~L~~~ea~~L 135 (711)
. .+ +...+.+.+++.+|+.++
T Consensus 169 ~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 169 QEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 0 01 234677778888887773
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.28 E-value=2.8 Score=43.56 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=40.4
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCC-CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPF-DEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||++.+++. +....+ ..+.+|+..... ...+-++...+.++..........+....+ ..+.++ =++++|
T Consensus 147 GvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~~-DlVLID 222 (374)
T PRK14722 147 GVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRNK-HMVLID 222 (374)
T ss_pred CCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcCC-CEEEEc
Confidence 8999999999998 333333 356677644432 333444444555543322122222222223 334444 456699
Q ss_pred CCCC
Q 039822 78 DVWN 81 (711)
Q Consensus 78 dv~~ 81 (711)
....
T Consensus 223 TaG~ 226 (374)
T PRK14722 223 TIGM 226 (374)
T ss_pred CCCC
Confidence 9843
No 313
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.17 E-value=1.8 Score=37.36 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=45.9
Q ss_pred hccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC--CCCCCCCCCeeeecccccceEecccccc
Q 039822 529 DALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP--PLGKLPSLEDLEVCRMESVKRVGHEFLG 606 (711)
Q Consensus 529 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 606 (711)
..+..+++|+.+.+... ... +....+..+++|+.+.+.+ .+..++ .+...++|+.+.+.. ++..++...+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~ 101 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFS 101 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTT
T ss_pred hhccccccccccccccc-ccc--cceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhc
Confidence 35667788999999774 333 4355677888899999975 344444 366788999999864 36666665432
Q ss_pred CCCCCCCCcccCCCccceeecc
Q 039822 607 VESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 607 ~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
.. .|+.+.+.
T Consensus 102 -----------~~-~l~~i~~~ 111 (129)
T PF13306_consen 102 -----------NC-NLKEINIP 111 (129)
T ss_dssp -----------T--T--EEE-T
T ss_pred -----------CC-CceEEEEC
Confidence 33 57777664
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.94 E-value=2.3 Score=42.20 Aligned_cols=106 Identities=16% Similarity=0.073 Sum_probs=52.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-C------ChhhHHHHHHHHHHHcC-CceE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSA-P------DVAEFQSLMQHIQEFVE-GEKF 72 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~------~~~~~~~~~~~~~~~l~-~~r~ 72 (711)
|+||||+.+.++. .+. ...+.+++.-..-. ..+...++......-. . +.-+.......+...+. ..+=
T Consensus 121 g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~ 196 (270)
T TIGR02858 121 QCGKTTLLRDLAR--ILS-TGISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMSPD 196 (270)
T ss_pred CCCHHHHHHHHhC--ccC-CCCceEEECCEEee-cchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCCCC
Confidence 8999999999997 332 33455555311111 0011123332221110 0 01111111222333333 4678
Q ss_pred EEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhh
Q 039822 73 LLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI 115 (711)
Q Consensus 73 LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~ 115 (711)
++++|.+. ..+.+..+...+. .|..+|+||-+.++...
T Consensus 197 villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 197 VIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred EEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 99999983 3334555544442 47789999987665443
No 315
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.93 E-value=3.7 Score=38.44 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=19.9
Q ss_pred CccHHHHHHHHhcChhhhccC--------CceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--------EKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--------~~~~wv~~~~~ 32 (711)
|+|||+++.+++..-.....| ..++|++....
T Consensus 42 g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 42 GSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 899999999988843222222 26888887665
No 316
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=81.92 E-value=3.1 Score=44.58 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=28.9
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeCCCCC-HHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVSDPFD-EFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~~~-~~~~~~~i~~ 44 (711)
|+|||+|+.++... +... =+.++++-+++... ..+++..++.
T Consensus 171 GvGKs~L~~~~~~~--~~~~~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 171 GVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred CCChhHHHHHHHHH--HHHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence 89999999988873 2211 15677888876554 5667766665
No 317
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.68 E-value=6.3 Score=41.31 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=41.8
Q ss_pred CccHHHHHHHHhcChhhh--ccCCceEEEEeCCCCC-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVK--NHFEKRIWVCVSDPFD-EFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~--~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||.+.+++..-... .+=..+..++...... ...-++..++.++.........++....+.+. .+.-++++|
T Consensus 184 GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLID 261 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVD 261 (388)
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEc
Confidence 999999999988732211 1123566676664322 22224444444443222222333444434432 446689999
Q ss_pred CCCCC
Q 039822 78 DVWNE 82 (711)
Q Consensus 78 dv~~~ 82 (711)
-+...
T Consensus 262 TaGr~ 266 (388)
T PRK12723 262 TIGKS 266 (388)
T ss_pred CCCCC
Confidence 98543
No 318
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=81.64 E-value=4 Score=43.12 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=41.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCChhhH-----HHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTGS-------APDVAEF-----QSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~~~l 67 (711)
|+|||||++.++.. . ..+.++++-+++... ..++.+.++..-... ..+.... ....-.+.+++
T Consensus 172 G~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyf 247 (444)
T PRK08972 172 GVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYF 247 (444)
T ss_pred CCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999872 2 224566666766554 455666654432110 1111000 11111233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++||+
T Consensus 248 rd~G~~VLl~~Dsl 261 (444)
T PRK08972 248 RDQGLNVLLLMDSL 261 (444)
T ss_pred HHcCCCEEEEEcCh
Confidence 589999999998
No 319
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.40 E-value=3.7 Score=40.64 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=22.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+|||++|.+++.. -...=..++|++...+.
T Consensus 46 GtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 46 DTGKSLMVEQFAVT--QASRGNPVLFVTVESPA 76 (259)
T ss_pred CCCHHHHHHHHHHH--HHhCCCcEEEEEecCCc
Confidence 89999999998773 32333478899887533
No 320
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=81.36 E-value=5.3 Score=42.64 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=43.7
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCC--hhh--HHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPF-DEFRIARSIIEALTG--------SAPD--VAE--FQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~--~~~--~~~~~~~~~~~ 66 (711)
|+|||||+.+++.. ...+. +.++++-+++.. ...++++.++..-.. ..+. ... .-...-.+.++
T Consensus 154 GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEy 231 (463)
T PRK09280 154 GVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEY 231 (463)
T ss_pred CCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999988763 32222 346677776554 466666666653211 1111 000 01112223343
Q ss_pred c---CCceEEEEEeCC
Q 039822 67 V---EGEKFLLVLDDV 79 (711)
Q Consensus 67 l---~~~r~LlvlDdv 79 (711)
+ +++++|+++|++
T Consensus 232 frd~~G~~VLll~Dsl 247 (463)
T PRK09280 232 FRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHhcCCceEEEecch
Confidence 3 789999999998
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=81.21 E-value=4.9 Score=39.16 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=25.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARS 41 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 41 (711)
|+|||++|.++.. .-...=..++||+... ++.++.+.
T Consensus 31 GsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 31 GTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 8999999999876 2223345788998765 44444444
No 322
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=81.13 E-value=2.1 Score=44.43 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred CccHHHHHHHHhcChhh----hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEE
Q 039822 1 GIGKTTLAQLAYNNDDV----KNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVL 76 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~Llvl 76 (711)
|.|||.|+-.+|+.-.+ +-||. .+...+-+.+....... .....+.+.+.++..||+|
T Consensus 72 G~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~----~~l~~va~~l~~~~~lLcf 133 (362)
T PF03969_consen 72 GRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQD----DPLPQVADELAKESRLLCF 133 (362)
T ss_pred CCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCC----ccHHHHHHHHHhcCCEEEE
Confidence 89999999999985222 22221 33333333332111111 1233344556667779999
Q ss_pred eCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhh
Q 039822 77 DDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI 115 (711)
Q Consensus 77 Ddv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~ 115 (711)
|.+.=.+..+-.-+...+..-....-++|+|.+....+.
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 996322222211111122211123346777766655544
No 323
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=81.10 E-value=2.6 Score=47.95 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=45.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcCC-ceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVEG-EKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~~-~r~Ll 74 (711)
|+||||||.+++.. ....=..++||+..+.+++. .+++++.... +....+.....+.+.++. +--|+
T Consensus 70 GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LV 142 (790)
T PRK09519 70 SSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIV 142 (790)
T ss_pred CCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEE
Confidence 89999999887763 22222468899988877743 5666654321 112234455555555543 56689
Q ss_pred EEeCCC
Q 039822 75 VLDDVW 80 (711)
Q Consensus 75 vlDdv~ 80 (711)
|+|-+.
T Consensus 143 VIDSI~ 148 (790)
T PRK09519 143 VIDSVA 148 (790)
T ss_pred EEcchh
Confidence 999973
No 324
>PTZ00185 ATPase alpha subunit; Provisional
Probab=80.79 E-value=6.9 Score=42.07 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred CccHHHHH-HHHhcChhhh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC--------CChhhH-----HHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVK-----NHFEKRIWVCVSDPFDEFRIARSIIEALTGSA--------PDVAEF-----QSLMQ 61 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~-----~~~~~ 61 (711)
|+|||+|| ..+.+...+. ++-..++++-+++......-+...++.-+.-. .++.-. --...
T Consensus 199 GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~ 278 (574)
T PTZ00185 199 QTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGV 278 (574)
T ss_pred CCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 89999997 5556532221 23346778888887765444444444433110 000000 00112
Q ss_pred HHHHHc--CCceEEEEEeCC
Q 039822 62 HIQEFV--EGEKFLLVLDDV 79 (711)
Q Consensus 62 ~~~~~l--~~~r~LlvlDdv 79 (711)
.+.+++ +++.+|+|+||+
T Consensus 279 tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 279 TMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHcCCCEEEEEcCc
Confidence 233333 578999999998
No 325
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=80.76 E-value=4.2 Score=37.82 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=25.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~ 44 (711)
|+||||+++.+++ ........ +.++..... ......++++.
T Consensus 6 GsGKtT~~~~L~~--~l~~~~~~-~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 6 GSGKTTQIRLLAE--ALKEKGYK-VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp TSSHHHHHHHHHH--HHHHTTEE-EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHcCCc-ccccCCCCCChHHHHHHHHHh
Confidence 8999999999998 56555444 333333332 34455555555
No 326
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=80.75 E-value=2.3 Score=43.03 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhh
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETV 112 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~ 112 (711)
+-++|+|...+-++. .++..+-..+.||||+.|---.++
T Consensus 352 ~~FiIIDEaQNLTph---eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPH---ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHH---HHHHHHHhccCCCEEEEcCCHHHc
Confidence 469999999554443 344446677889999998754443
No 327
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=80.63 E-value=5.5 Score=37.97 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=42.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhc-------C-CCCCh-hh------HHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP-FDEFRIARSIIEALT-------G-SAPDV-AE------FQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~-------~-~~~~~-~~------~~~~~~~~~ 64 (711)
|+|||+|+..+++. . .-+.++++.+++. ....++.+.+...-. . ...+. .. ..-...+..
T Consensus 25 g~GKt~Ll~~i~~~--~--~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyf 100 (215)
T PF00006_consen 25 GVGKTVLLQEIANN--Q--DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYF 100 (215)
T ss_dssp TSSHHHHHHHHHHH--C--TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhc--c--cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHHH
Confidence 79999999999883 2 2334578877754 456666666644310 0 11110 00 011112222
Q ss_pred HHcCCceEEEEEeCC
Q 039822 65 EFVEGEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l~~~r~LlvlDdv 79 (711)
+. +++.+|+++||+
T Consensus 101 rd-~G~dVlli~Dsl 114 (215)
T PF00006_consen 101 RD-QGKDVLLIIDSL 114 (215)
T ss_dssp HH-TTSEEEEEEETH
T ss_pred hh-cCCceeehhhhh
Confidence 23 799999999998
No 328
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=80.61 E-value=16 Score=36.15 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+-++.+++ ..+.++.+..+..++...++..+.......... ...+........+++..-++++|+..
T Consensus 104 g~gKt~a~~~y~~------s~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~~~iivDEA~ 175 (297)
T COG2842 104 GLGKTQAAKNYAP------SNPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTVRLIIVDEAD 175 (297)
T ss_pred cchhHHHHHhhcc------cCccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCcceeeeehhh
Confidence 7999999999887 233455566777778777888877777655532 23344445555568888899999986
Q ss_pred CCCccCchhhHhhh
Q 039822 81 NEDYCKWEPFYYCL 94 (711)
Q Consensus 81 ~~~~~~~~~~~~~l 94 (711)
.-..+.++.+....
T Consensus 176 ~L~~~ale~lr~i~ 189 (297)
T COG2842 176 RLPYRALEELRRIH 189 (297)
T ss_pred ccChHHHHHHHHHH
Confidence 65555555554443
No 329
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=80.58 E-value=7.3 Score=41.48 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=43.6
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCC--hhh-----HHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPF-DEFRIARSIIEALTG--------SAPD--VAE-----FQSLMQHI 63 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~--~~~-----~~~~~~~~ 63 (711)
|+|||+|+.+++.. ...+. ..++++-+++.. ...++++.+...-.. ..++ ... ......+.
T Consensus 153 G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 230 (461)
T TIGR01039 153 GVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEY 230 (461)
T ss_pred CCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999998873 32222 356677776554 456666666543111 1111 000 11122233
Q ss_pred HHHcCCceEEEEEeCC
Q 039822 64 QEFVEGEKFLLVLDDV 79 (711)
Q Consensus 64 ~~~l~~~r~LlvlDdv 79 (711)
.+.-+++++|+++|++
T Consensus 231 frd~~G~~VLll~Dsl 246 (461)
T TIGR01039 231 FRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHhcCCeeEEEecch
Confidence 3334678999999998
No 330
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=80.10 E-value=5 Score=35.77 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 9 GsGKSTla~~L~~ 21 (149)
T cd02027 9 GSGKSTIARALEE 21 (149)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 331
>PRK12678 transcription termination factor Rho; Provisional
Probab=80.08 E-value=2.1 Score=46.36 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=39.7
Q ss_pred CccHHHHHHHHhcChhhhccC-Cce-EEEEeCCCCC-HHHHHHHHHHHhcC-CCCChh----hHHHHHHHHHHHc--CCc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKR-IWVCVSDPFD-EFRIARSIIEALTG-SAPDVA----EFQSLMQHIQEFV--EGE 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~-~wv~~~~~~~-~~~~~~~i~~~l~~-~~~~~~----~~~~~~~~~~~~l--~~~ 70 (711)
|+|||||+..+++ .+.... +.. +.+-+++... +.++.+.+-..+-. ..+... ......-.+.+++ .++
T Consensus 426 ~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~ 503 (672)
T PRK12678 426 KAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGK 503 (672)
T ss_pred CCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999998 453322 333 3444555443 44444443111111 111111 1112222233333 588
Q ss_pred eEEEEEeCC
Q 039822 71 KFLLVLDDV 79 (711)
Q Consensus 71 r~LlvlDdv 79 (711)
.+||++|++
T Consensus 504 dVlillDSl 512 (672)
T PRK12678 504 DVVVLLDSI 512 (672)
T ss_pred CEEEEEeCc
Confidence 999999998
No 332
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=79.99 E-value=20 Score=35.90 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-hhhhhh-hCCcCeEECCCC
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-ETVACI-MGSTDVISVNVL 127 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~l~~L 127 (711)
+++=++|+|+++..+.+.+..++.-+..-..+..+|++|.+ ..+... ....+.+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55668899999888878888888877766666766666665 444433 233456666654
No 333
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.97 E-value=4.7 Score=37.08 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCc--eEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchhhhhhhCCcCeEEC
Q 039822 59 LMQHIQEFVEGE--KFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVACIMGSTDVISV 124 (711)
Q Consensus 59 ~~~~~~~~l~~~--r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~~~~~~~~~~l 124 (711)
..-.+.+.+-.+ .=++++|..... +......+...+... ..|..||++|.+.+.... ...++.+
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 333455556566 678888986332 222233333333321 146778899988776543 3344444
No 334
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.87 E-value=6.3 Score=36.18 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCC-ccCchhhHhhhccC-CCCCEEEEEecchhhhhh
Q 039822 60 MQHIQEFVEGEKFLLVLDDVWNED-YCKWEPFYYCLKNC-LYGSKILITTRKETVACI 115 (711)
Q Consensus 60 ~~~~~~~l~~~r~LlvlDdv~~~~-~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~~ 115 (711)
.-.+.+.+-.++=++++|+....- ......+...+... ..|..||++|.+......
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 334666777788899999973321 12222233333322 136778888888765543
No 335
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.77 E-value=5.9 Score=41.67 Aligned_cols=13 Identities=38% Similarity=0.276 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|.+++.
T Consensus 233 GvGKTTtaaKLA~ 245 (432)
T PRK12724 233 GSGKTTSIAKLAA 245 (432)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.71 E-value=2.3 Score=39.30 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|++++.
T Consensus 11 gsGKTtfakeLak 23 (261)
T COG4088 11 GSGKTTFAKELAK 23 (261)
T ss_pred CCCchHHHHHHHH
Confidence 8999999999997
No 337
>PLN02924 thymidylate kinase
Probab=79.45 E-value=5.3 Score=38.33 Aligned_cols=41 Identities=10% Similarity=-0.041 Sum_probs=23.1
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeC-CCCCHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVS-DPFDEFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~-~~~~~~~~~~~i~~ 44 (711)
|+||||+|+.+++ ..... +.. ..+... ......+..+.++.
T Consensus 26 GsGKsTq~~~L~~--~l~~~g~~v-~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 26 RSGKSTQCAKLVS--FLKGLGVAA-ELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCHHHHHHHHHH--HHHhcCCCc-eeeeCCCCCChHHHHHHHHHh
Confidence 8999999999998 44333 333 333222 22334455555544
No 338
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=79.39 E-value=6.1 Score=39.08 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=27.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|.+++.+..... -..++|++...+ ..++...++...
T Consensus 29 g~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~--~~~l~~R~la~~ 71 (259)
T PF03796_consen 29 GVGKTAFALQIALNAALNG-GYPVLYFSLEMS--EEELAARLLARL 71 (259)
T ss_dssp TSSHHHHHHHHHHHHHHTT-SSEEEEEESSS---HHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHhc-CCeEEEEcCCCC--HHHHHHHHHHHh
Confidence 7999999999998433332 267888876543 334555555544
No 339
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=79.31 E-value=5.7 Score=42.24 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=39.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC-------CCCC--hhh--HHHHHHHHHHHc--
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTG-------SAPD--VAE--FQSLMQHIQEFV-- 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~--~~~--~~~~~~~~~~~l-- 67 (711)
|+|||||++.++.. .....+++++.-.+..+..++....+..... +.++ ... .-...-.+.+++
T Consensus 175 GsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd 251 (450)
T PRK06002 175 GVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRD 251 (450)
T ss_pred CCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988862 2223345555433445555554444433211 1111 000 111112233333
Q ss_pred CCceEEEEEeCC
Q 039822 68 EGEKFLLVLDDV 79 (711)
Q Consensus 68 ~~~r~LlvlDdv 79 (711)
+++.+|+++||+
T Consensus 252 ~G~~Vll~~Dsl 263 (450)
T PRK06002 252 RGENVLLIVDSV 263 (450)
T ss_pred cCCCEEEeccch
Confidence 488999999998
No 340
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=79.26 E-value=1 Score=38.85 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 8 GsGKtTia~~L~~ 20 (129)
T PF13238_consen 8 GSGKTTIAKELAE 20 (129)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.01 E-value=5.6 Score=41.17 Aligned_cols=79 Identities=13% Similarity=0.004 Sum_probs=42.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDd 78 (711)
|+||||++.+++. .....=..+.+|+...... ..+-.+..++.++.......+..+....+.+.- .+..=+|++|-
T Consensus 216 GvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 216 GVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 8999999999987 3333324577887765433 223333344444432211233444444443322 13456888898
Q ss_pred CCC
Q 039822 79 VWN 81 (711)
Q Consensus 79 v~~ 81 (711)
...
T Consensus 294 AGr 296 (407)
T PRK12726 294 VGR 296 (407)
T ss_pred CCC
Confidence 744
No 342
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=78.86 E-value=15 Score=34.75 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhhh
Q 039822 61 QHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVACI 115 (711)
Q Consensus 61 ~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~ 115 (711)
-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+......
T Consensus 134 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 134 LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 3355555566778899997432 222233344444433346678888877765543
No 343
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=78.81 E-value=1.8 Score=38.67 Aligned_cols=26 Identities=31% Similarity=0.152 Sum_probs=21.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC 28 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~ 28 (711)
|+||||||+++.+ +....-..+++++
T Consensus 12 GsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 12 GSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp TSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 8999999999998 6766666777876
No 344
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=78.79 E-value=9 Score=41.03 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=43.1
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCC-CHHHHHHHHHHHhcCC--------CCC--h-----hhHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPF-DEFRIARSIIEALTGS--------APD--V-----AEFQSLMQH 62 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~--~-----~~~~~~~~~ 62 (711)
|+|||+|+.++++.....+.+. .++++-+++.. ...++++.+...-... .++ . .-......+
T Consensus 151 G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 230 (458)
T TIGR01041 151 GLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAE 230 (458)
T ss_pred CCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999888432222222 45566676554 4566666655432111 111 0 011111222
Q ss_pred HHHHcCCceEEEEEeCC
Q 039822 63 IQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv 79 (711)
..+.-+++++|+++||+
T Consensus 231 yfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 231 YLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHccCCcEEEEEcCh
Confidence 33322578999999998
No 345
>PHA02244 ATPase-like protein
Probab=78.50 E-value=3.9 Score=42.10 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+++++
T Consensus 129 GtGKTtLA~aLA~ 141 (383)
T PHA02244 129 GSGKNHIAEQIAE 141 (383)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 346
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=78.45 E-value=7.4 Score=37.35 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=19.9
Q ss_pred CccHHHHHHHHhcChhhhcc-C-CceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-F-EKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F-~~~~wv~~~~~~ 33 (711)
|+||||+|+.+.. ..... . ..+..|+.....
T Consensus 9 GSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 9 AVGKSTTARVLQA--LLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CCCHHHHHHHHHH--HHhhcCCCCcEEEEecCccc
Confidence 8999999999987 44321 1 235556655443
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.35 E-value=3.2 Score=37.37 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=54.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|.|||||++.++.. . ....+.+++......... .......+.... +.+..+...-.+.+.+....=++++|...
T Consensus 35 GsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 35 GSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred CCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 89999999999983 2 345566666432211100 011111121110 01222333344566666677889999973
Q ss_pred CC-CccCchhhHhhhccC-CCCCEEEEEecchhhhhh
Q 039822 81 NE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVACI 115 (711)
Q Consensus 81 ~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~~ 115 (711)
.. +......+...+... ..+.-||++|-+......
T Consensus 109 ~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 32 112222333333221 125678888877665544
No 348
>PRK13976 thymidylate kinase; Provisional
Probab=78.02 E-value=5.9 Score=37.66 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.7
Q ss_pred CccHHHHHHHHhcChhhhcc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH 20 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~ 20 (711)
|+||||+++.+++ .....
T Consensus 10 GsGKsTq~~~L~~--~L~~~ 27 (209)
T PRK13976 10 GSGKTTQSRLLAE--YLSDI 27 (209)
T ss_pred CCCHHHHHHHHHH--HHHHh
Confidence 8999999999998 44443
No 349
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=77.92 E-value=4.9 Score=47.18 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHHcCCceEEEEEeCCCCCCccCchhhHhh---hccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHH---
Q 039822 64 QEFVEGEKFLLVLDDVWNEDYCKWEPFYYC---LKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFE--- 137 (711)
Q Consensus 64 ~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~---l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~--- 137 (711)
.+.++..++++.+|.++......-...... +...-+.+++|+|+|....-........+++..+.++.......
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 567889999999999855333221111111 11223578999999876544333333344555544443332222
Q ss_pred -----HHhcCCCCcc---hhhhHHHHHHHHHHhcCCChHHHHHHHHHhc-----CCCCHHHHHHHHHh
Q 039822 138 -----SLAFFGNSME---ERENLEKIGREIIRKCKGLPLAAKTIASLLR-----SKNTEKEWKNILES 192 (711)
Q Consensus 138 -----~~~~~~~~~~---~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~-----~~~~~~~w~~~l~~ 192 (711)
...++..... ....+..--..-++.....|++|.+.+..-. .....+.|+.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1111111111 0011111112233334778999998885443 12235566665554
No 350
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.83 E-value=4.2 Score=45.04 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=44.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|.||||||.-+++ .+++ .|+=|.++...+...+-..|...+.......+ .+++.-+|+|.++
T Consensus 336 GlGKTTLAHViAk---qaGY--sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------dsrP~CLViDEID 397 (877)
T KOG1969|consen 336 GLGKTTLAHVIAK---QAGY--SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DSRPVCLVIDEID 397 (877)
T ss_pred CCChhHHHHHHHH---hcCc--eEEEecccccccHHHHHHHHHHHHhhcccccc-------------CCCcceEEEeccc
Confidence 8999999998886 2332 56777788888877777777776653332111 1567788889885
Q ss_pred CCC
Q 039822 81 NED 83 (711)
Q Consensus 81 ~~~ 83 (711)
-..
T Consensus 398 Ga~ 400 (877)
T KOG1969|consen 398 GAP 400 (877)
T ss_pred CCc
Confidence 433
No 351
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.75 E-value=7.8 Score=41.35 Aligned_cols=45 Identities=22% Similarity=0.110 Sum_probs=25.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~ 47 (711)
|+||||.|.+++. .....-..+..|+..... ...+.++.++.+++
T Consensus 105 GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 105 GSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 8999999999987 444332345555544321 22333444555543
No 352
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.35 E-value=10 Score=39.49 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=38.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDd 78 (711)
|+||||++.+++. .....=..+.+++..... ...+-++..+..++.......+..+..+.+...-. .+.=++++|-
T Consensus 251 GvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 251 GVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 8999999999987 343332345666655432 11222222223333221111233334333433322 1235778888
Q ss_pred CCC
Q 039822 79 VWN 81 (711)
Q Consensus 79 v~~ 81 (711)
...
T Consensus 329 aGR 331 (436)
T PRK11889 329 AGK 331 (436)
T ss_pred ccc
Confidence 744
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=77.22 E-value=3.8 Score=40.29 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|++++.
T Consensus 9 GSGKST~a~~La~ 21 (249)
T TIGR03574 9 GVGKSTFSKELAK 21 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 354
>PRK10867 signal recognition particle protein; Provisional
Probab=76.86 E-value=5 Score=42.68 Aligned_cols=13 Identities=46% Similarity=0.411 Sum_probs=11.6
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||.|.+++.
T Consensus 110 GsGKTTtaakLA~ 122 (433)
T PRK10867 110 GAGKTTTAGKLAK 122 (433)
T ss_pred CCcHHHHHHHHHH
Confidence 8999998888876
No 355
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=76.84 E-value=12 Score=43.47 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||+|+.++. .....| +-+..+...+...+...-. ...+.. .....+.+.+. ...+-+++||.++
T Consensus 359 G~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~-~~~g~~-----~G~~~~~l~~~-~~~~~villDEid 426 (784)
T PRK10787 359 GVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRR-TYIGSM-----PGKLIQKMAKV-GVKNPLFLLDEID 426 (784)
T ss_pred CCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchh-ccCCCC-----CcHHHHHHHhc-CCCCCEEEEEChh
Confidence 8999999999997 333332 2244444444432221110 011111 11222223322 2233468899985
Q ss_pred CCCccC----chhhHhhhcc---------------CCCCCEEEEEecchhhhhh-hCCcCeEECCCCChhhHHHHHHHHh
Q 039822 81 NEDYCK----WEPFYYCLKN---------------CLYGSKILITTRKETVACI-MGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 81 ~~~~~~----~~~~~~~l~~---------------~~~~s~iivTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
...... .+.+...+.. .....-+|.|+....+... .+.-.++++.+++.+|-.++.+++.
T Consensus 427 k~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 427 KMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred hcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 443221 2233332221 0123344445544332222 1234578889999888888877665
No 356
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=76.83 E-value=13 Score=35.58 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhhh
Q 039822 62 HIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVACI 115 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~ 115 (711)
.+.+.+-.++=++++|+.... +......+...+.....+..||++|.+......
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 344555556678999997432 122223333334332334568888877665543
No 357
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=76.77 E-value=12 Score=34.60 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchhhhh
Q 039822 62 HIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVAC 114 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~ 114 (711)
.+.+.+-.++-++++|+.... +......+...+... ..+..||++|.+.....
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 456666677789999997332 112222333333321 23667888888865443
No 358
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=76.72 E-value=6.7 Score=38.70 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=38.9
Q ss_pred CccHHHHH-HHHhcChhhhccCCce-EEEEeCCCC-CHHHHHHHHHHHhcC--------CCCC-hhh------HHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEKR-IWVCVSDPF-DEFRIARSIIEALTG--------SAPD-VAE------FQSLMQH 62 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~-~~~------~~~~~~~ 62 (711)
|+|||+|| ..+.+ . .+-+.+ +++-+++.. ...++.+.+...-.. ..++ ... ..-...+
T Consensus 79 g~GKt~L~l~~i~~--~--~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE 154 (274)
T cd01132 79 QTGKTAIAIDTIIN--Q--KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGE 154 (274)
T ss_pred CCCccHHHHHHHHH--h--cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHH
Confidence 79999996 45554 1 223444 566676654 455666665543211 1111 000 0111222
Q ss_pred HHHHcCCceEEEEEeCC
Q 039822 63 IQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv 79 (711)
..+. +++.+|+++||+
T Consensus 155 ~fr~-~G~~Vlvl~Dsl 170 (274)
T cd01132 155 YFMD-NGKHALIIYDDL 170 (274)
T ss_pred HHHH-CCCCEEEEEcCh
Confidence 2222 588999999998
No 359
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=76.47 E-value=5.2 Score=42.29 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=39.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC--------CCCC--hhh--HHHHHHHHHHHc-
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTG--------SAPD--VAE--FQSLMQHIQEFV- 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~--------~~~~--~~~--~~~~~~~~~~~l- 67 (711)
|+|||||+..++.. .. ...+++...-.+.....++.+..+..-.. ..++ ... .-...-.+.+++
T Consensus 150 G~GKTtLl~~I~~~--~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfr 226 (418)
T TIGR03498 150 GVGKSTLLSMLARN--TD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFR 226 (418)
T ss_pred CCChHHHHHHHhCC--CC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999998873 22 22233333333444455565555443211 1111 000 011112233433
Q ss_pred -CCceEEEEEeCC
Q 039822 68 -EGEKFLLVLDDV 79 (711)
Q Consensus 68 -~~~r~LlvlDdv 79 (711)
+++.+|+++||+
T Consensus 227 d~G~~Vll~~Dsl 239 (418)
T TIGR03498 227 DQGKDVLLLMDSV 239 (418)
T ss_pred HcCCCEEEeccch
Confidence 578999999998
No 360
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.36 E-value=12 Score=38.88 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=47.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCChh-----hHHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS-DPFDEFRIARSIIEALTGS-------APDVA-----EFQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~-----~~~~~~~~~~~~l 67 (711)
|+|||||.-++++ ...+|.++---++ +.....++++..+..-+.. +.+.. ........|.++.
T Consensus 173 GVGKStLLgMiar----~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyF 248 (441)
T COG1157 173 GVGKSTLLGMIAR----NTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYF 248 (441)
T ss_pred CCcHHHHHHHHhc----cccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999997 4566644433344 4556777777776665322 11111 1122233455666
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++|-+
T Consensus 249 RDqG~~VLL~mDSl 262 (441)
T COG1157 249 RDQGKRVLLIMDSL 262 (441)
T ss_pred HhCCCeEEEEeecH
Confidence 478999999998
No 361
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=76.32 E-value=16 Score=33.61 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCCC-Cc-cCchhhHhhhcc-CCCCCEEEEEecchhhhhhhC
Q 039822 57 QSLMQHIQEFVEGEKFLLVLDDVWNE-DY-CKWEPFYYCLKN-CLYGSKILITTRKETVACIMG 117 (711)
Q Consensus 57 ~~~~~~~~~~l~~~r~LlvlDdv~~~-~~-~~~~~~~~~l~~-~~~~s~iivTtR~~~~~~~~~ 117 (711)
++..-.|.+.+-+++-+++-|.-.-. ++ ..|+-+ ..+.. ...|.-||++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 44445577778888888888864211 11 223322 22222 235999999999999887763
No 362
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.18 E-value=5.8 Score=42.99 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=19.0
Q ss_pred CccHHHHHHHHhcChhhhcc--CCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH--FEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~--F~~~~wv~~~ 30 (711)
|+||||++.+++. ..... ...+..++..
T Consensus 360 GvGKTTtaakLAa--~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 360 GAGKTTTIAKLAQ--RFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCCHHHHHHHHHH--HHHHhcCCCceEEEecc
Confidence 8999999999887 33332 2356666654
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=76.16 E-value=17 Score=33.76 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=30.9
Q ss_pred HHHHHcCC--ceEEEEEeCCCCCCccC-chhh----HhhhccCCCCCEEEEEecchhhhhhh
Q 039822 62 HIQEFVEG--EKFLLVLDDVWNEDYCK-WEPF----YYCLKNCLYGSKILITTRKETVACIM 116 (711)
Q Consensus 62 ~~~~~l~~--~r~LlvlDdv~~~~~~~-~~~~----~~~l~~~~~~s~iivTtR~~~~~~~~ 116 (711)
++.+.+.. ++-++++|......... -..+ ...+.. ..++.+|++|...++...+
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 34444443 78899999985432211 1112 222222 1367899999988776654
No 364
>PRK04328 hypothetical protein; Provisional
Probab=76.14 E-value=5.7 Score=39.02 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+|||+||.++..+ -...=..++||+..+.+
T Consensus 33 GsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 33 GTGKSIFSQQFLWN--GLQMGEPGVYVALEEHP 63 (249)
T ss_pred CCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCH
Confidence 89999999998873 33334578899877643
No 365
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=75.87 E-value=4.5 Score=37.25 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=27.8
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCCCHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPFDEFRIAR 40 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~ 40 (711)
|+|||+|..+.++ ..++.|. +++=.++....+-..+.+
T Consensus 23 GSGKTaLie~~~~--~L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 23 GSGKTALIEKTLR--ALKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred CcCHHHHHHHHHH--HHHhhCCeEEEeceeechhhHHHHHh
Confidence 8999999999998 7777776 455555555566555555
No 366
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=75.87 E-value=5 Score=44.30 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccC----------------------------CCCCEEEEEe-cchh-hhhhh-C
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNC----------------------------LYGSKILITT-RKET-VACIM-G 117 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~----------------------------~~~s~iivTt-R~~~-~~~~~-~ 117 (711)
...-.|++|++.+-+......+...+... ....++|.+| ++.+ +.... .
T Consensus 174 a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs 253 (531)
T TIGR02902 174 AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS 253 (531)
T ss_pred cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh
Confidence 34567889998666555555554433211 1123666654 4332 11111 1
Q ss_pred CcCeEECCCCChhhHHHHHHHHh
Q 039822 118 STDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 118 ~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
....+.+++++.+|-.++++..+
T Consensus 254 R~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 254 RCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred hhheeeCCCCCHHHHHHHHHHHH
Confidence 12467788888888888887665
No 367
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=75.84 E-value=1.1 Score=44.61 Aligned_cols=77 Identities=21% Similarity=0.177 Sum_probs=35.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++++..... ....=..+.-+..+...+...+++.|-..+.... .. .-.--.+++.++.+||+-
T Consensus 43 GtGKT~li~~~l~~--l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~--~~--------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 43 GTGKTSLIQNFLSS--LDSDKYLVITINFSAQTTSNQLQKIIESKLEKRR--GR--------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp TSSHHHHHHHHHHC--STTCCEEEEEEES-TTHHHHHHHHCCCTTECECT--TE--------EEEEESSSEEEEEEETTT
T ss_pred CCchhHHHHhhhcc--CCccccceeEeeccCCCCHHHHHHHHhhcEEcCC--CC--------CCCCCCCcEEEEEecccC
Confidence 89999999998762 2221112334445444333333332221111100 00 000114688999999985
Q ss_pred CCCccCchh
Q 039822 81 NEDYCKWEP 89 (711)
Q Consensus 81 ~~~~~~~~~ 89 (711)
-...+.|+.
T Consensus 111 ~p~~d~ygt 119 (272)
T PF12775_consen 111 MPQPDKYGT 119 (272)
T ss_dssp -S---TTS-
T ss_pred CCCCCCCCC
Confidence 555555553
No 368
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.69 E-value=15 Score=43.26 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=59.6
Q ss_pred CccHHHHHHHHhcChhhhccC------C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc--CCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF------E-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV--EGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F------~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~r 71 (711)
|+|||++|..++. ++.... . .+++++++.-. .+... ..+.+...+.+.+.+ .+++
T Consensus 209 GvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~~l~-------------ag~~~-~g~~e~~lk~~~~~~~~~~~~ 272 (857)
T PRK10865 209 GVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGALV-------------AGAKY-RGEFEERLKGVLNDLAKQEGN 272 (857)
T ss_pred CCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehhhhh-------------hccch-hhhhHHHHHHHHHHHHHcCCC
Confidence 8999999999998 442211 1 23333333210 01111 122233333333322 2468
Q ss_pred EEEEEeCCCCCC-------ccCchhhHhhhccCCCCCEEEEEecchhhhhh-------hCCcCeEECCCCChhhHHHHHH
Q 039822 72 FLLVLDDVWNED-------YCKWEPFYYCLKNCLYGSKILITTRKETVACI-------MGSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 72 ~LlvlDdv~~~~-------~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
.+|++|++..-. ..+...+..+....+ .-++|-+|.....-.. ....+.+.+...+.++...+++
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~ 351 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR 351 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHH
Confidence 999999972211 001112221111222 3456666655433111 1123467787779999999886
Q ss_pred HHh
Q 039822 138 SLA 140 (711)
Q Consensus 138 ~~~ 140 (711)
...
T Consensus 352 ~l~ 354 (857)
T PRK10865 352 GLK 354 (857)
T ss_pred HHh
Confidence 554
No 369
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.58 E-value=1.2 Score=51.27 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCCCCc-cCchhh----HhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCC
Q 039822 69 GEKFLLVLDDVWNEDY-CKWEPF----YYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFESLAFFG 143 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~-~~~~~~----~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 143 (711)
..+-|+++|....... .+-..+ ...+. ..|+.+|+||-...+.........+.-..+..++. .+-..+-...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCceEEEECC
Confidence 4789999999855432 222223 22232 24789999999887654432111111111111110 0000111111
Q ss_pred CCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 039822 144 NSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSK 180 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 180 (711)
+.+. ...|-+|++.+ |+|-.+.--|..+...
T Consensus 478 G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 478 GIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 1111 23467777766 7888888777776544
No 370
>PRK11823 DNA repair protein RadA; Provisional
Probab=75.18 E-value=6.5 Score=42.30 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=22.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+|||||+.+++. .....=..++|++..+..
T Consensus 90 G~GKTtL~lq~a~--~~a~~g~~vlYvs~Ees~ 120 (446)
T PRK11823 90 GIGKSTLLLQVAA--RLAAAGGKVLYVSGEESA 120 (446)
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEEccccH
Confidence 8999999999998 343332467888865543
No 371
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.01 E-value=1.4 Score=41.58 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
+-++|+|++.-.+...+..+....+. .+.|+|+.=-..
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 35999999866555556666555544 367777665433
No 372
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=74.97 E-value=11 Score=39.97 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=40.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCh--hh--HHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALT--------GSAPDV--AE--FQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~~--~~--~~~~~~~~~~~l 67 (711)
|+|||||+..++.. .. -+.++++-+++... ..++....+..-. ...++. .. .-...-.+.+++
T Consensus 168 G~GKTtLL~~I~~~--~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyf 243 (442)
T PRK08927 168 GVGKSVLLSMLARN--AD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYF 243 (442)
T ss_pred CCCHHHHHHHHHhc--cC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999873 21 23455666665554 4455554444321 111110 00 011112233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++.+|+++||+
T Consensus 244 rd~G~~Vll~~Dsl 257 (442)
T PRK08927 244 RDQGKDVLCLMDSV 257 (442)
T ss_pred HHCCCcEEEEEeCc
Confidence 588999999998
No 373
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=74.89 E-value=6.9 Score=43.82 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CccHHHHHHHHhcChhhhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhH---HHHHHHHHHHcCC-----
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF---EKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEF---QSLMQHIQEFVEG----- 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~l~~----- 69 (711)
|.||||+++++.. .+.... ...+.+......-...+.+.+-..+..-....... ......+.+.|..
T Consensus 177 GTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~~~~~ 254 (615)
T PRK10875 177 GTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGAQPGSQ 254 (615)
T ss_pred CCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCcCCCcc
Confidence 8999999988886 332222 23566666655555555555544332111000000 0012333444421
Q ss_pred -------ce---EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec
Q 039822 70 -------EK---FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR 108 (711)
Q Consensus 70 -------~r---~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR 108 (711)
+. =++|+|.+.=.+...+..+...++ +++|+|+-=-
T Consensus 255 ~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 255 RLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred chhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 11 288999974334344455555544 4678776543
No 374
>PRK00889 adenylylsulfate kinase; Provisional
Probab=74.40 E-value=5.9 Score=36.41 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 14 GsGKST~a~~la~ 26 (175)
T PRK00889 14 GAGKTTIARALAE 26 (175)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 375
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=74.40 E-value=6.6 Score=35.83 Aligned_cols=30 Identities=20% Similarity=-0.028 Sum_probs=20.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..+..=..++-|+....
T Consensus 10 G~GKTt~a~~LA~--~la~~g~~vllvD~D~q 39 (169)
T cd02037 10 GVGKSTVAVNLAL--ALAKLGYKVGLLDADIY 39 (169)
T ss_pred cCChhHHHHHHHH--HHHHcCCcEEEEeCCCC
Confidence 8999999999887 44332235666765533
No 376
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=74.35 E-value=1.8 Score=32.65 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 9 gsGKst~~~~l~~ 21 (69)
T cd02019 9 GSGKSTVAKKLAE 21 (69)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 377
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=74.33 E-value=24 Score=32.53 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCCCccCchhhHhhh--ccCCCCCEEEEEecch
Q 039822 58 SLMQHIQEFVEGEKFLLVLDDVWNEDYCKWEPFYYCL--KNCLYGSKILITTRKE 110 (711)
Q Consensus 58 ~~~~~~~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~l--~~~~~~s~iivTtR~~ 110 (711)
+..-.+.+.+-.++=|-|||.....-..+-......+ .....|.-||.||-..
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 3344466666778889999998432211111222222 1334678888888654
No 378
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=74.24 E-value=11 Score=39.77 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=42.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCC--h-----hhHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTG--------SAPD--V-----AEFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~--~-----~~~~~~~~~~~ 64 (711)
|+|||+|+.++++. . .-+.++|+-++.... ..++.+.+...-.. +..+ . ....-..++..
T Consensus 150 Gvgk~~L~~~ia~~---~-~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyf 225 (436)
T PRK02118 150 GEPYNALLARIALQ---A-EADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKF 225 (436)
T ss_pred CCCHHHHHHHHHHh---h-CCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999998862 2 224577888887654 44555544433211 1111 0 11112223333
Q ss_pred HHcCCceEEEEEeCC
Q 039822 65 EFVEGEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l~~~r~LlvlDdv 79 (711)
+.-.++.+|+++||+
T Consensus 226 rd~g~~~VLli~Ddl 240 (436)
T PRK02118 226 ALEGKKKVLVLLTDM 240 (436)
T ss_pred HhcCCCCEEEeccCc
Confidence 444458999999998
No 379
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.16 E-value=5.6 Score=42.27 Aligned_cols=13 Identities=38% Similarity=0.281 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||.|.+++.
T Consensus 109 GsGKTTtaakLA~ 121 (428)
T TIGR00959 109 GSGKTTTCGKLAY 121 (428)
T ss_pred CCcHHHHHHHHHH
Confidence 8999999988887
No 380
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=74.02 E-value=14 Score=35.94 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCceEEEEEeCC----CCCCccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 58 SLMQHIQEFVEGEKFLLVLDDV----WNEDYCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 58 ~~~~~~~~~l~~~r~LlvlDdv----~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
...-.+.+.|-.+.=|++||.- +...+.....+...+... |.-|++.|-+-+...
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~ 203 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH
Confidence 3344577888888899999984 223333444444455544 888999998865543
No 381
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=74.00 E-value=5.8 Score=40.50 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSII 43 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~ 43 (711)
|+|||+|+.++++. .+-+.++++-+++..+ ..+++.++.
T Consensus 167 G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 167 GCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHHH
Confidence 89999999999983 2335678888876554 556666644
No 382
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.00 E-value=6.9 Score=36.29 Aligned_cols=13 Identities=46% Similarity=0.373 Sum_probs=8.8
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||+.+..+..
T Consensus 34 GsGKT~~~~~~~~ 46 (201)
T smart00487 34 GSGKTLAALLPAL 46 (201)
T ss_pred CCchhHHHHHHHH
Confidence 8999994444433
No 383
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=73.93 E-value=9.6 Score=40.94 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=43.5
Q ss_pred CccHHHHHHHHhcChhhhc---cCCceEEEEeCCCC-CHHHHHHHHHHHhcCC--------CCCh--hh--HHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKN---HFEKRIWVCVSDPF-DEFRIARSIIEALTGS--------APDV--AE--FQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~---~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~--~~--~~~~~~~~~ 64 (711)
|+|||+|+..+++.....+ .+ .++++-+++.. ...++++.+...-... .++. .. .--..-.+.
T Consensus 153 G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiA 231 (460)
T PRK04196 153 GLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAA 231 (460)
T ss_pred CCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999888433221 11 46677776555 4566666665532110 1110 00 011112244
Q ss_pred HHc---CCceEEEEEeCC
Q 039822 65 EFV---EGEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l---~~~r~LlvlDdv 79 (711)
+++ +++++|+++||+
T Consensus 232 Eyfr~d~G~~VLli~Dsl 249 (460)
T PRK04196 232 EYLAFEKGMHVLVILTDM 249 (460)
T ss_pred HHHHHhcCCcEEEEEcCh
Confidence 444 468999999998
No 384
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=73.82 E-value=7.6 Score=41.18 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=41.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC--------CCC-h---hhHHHHHHHHHHHc-
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGS--------APD-V---AEFQSLMQHIQEFV- 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~-~---~~~~~~~~~~~~~l- 67 (711)
|+|||||+..++... .....++.+.-.+.....++.+..+..-+.. .+. . .........+.+++
T Consensus 166 G~GKTtLl~~Ia~~~---~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 166 GVGKSTLLGMIAKNA---KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred CCChHHHHHHHhccC---CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999998742 1222344433334466666666555542211 111 0 01112222233333
Q ss_pred -CCceEEEEEeCCC
Q 039822 68 -EGEKFLLVLDDVW 80 (711)
Q Consensus 68 -~~~r~LlvlDdv~ 80 (711)
+++.+|+++|++.
T Consensus 243 ~~G~~VLlilDslT 256 (432)
T PRK06793 243 DQGNNVLLMMDSVT 256 (432)
T ss_pred HcCCcEEEEecchH
Confidence 4789999999983
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=73.82 E-value=4.5 Score=40.12 Aligned_cols=13 Identities=38% Similarity=0.192 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+++..
T Consensus 11 ~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 11 CSGKTTRAKELKK 23 (270)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7999999999998
No 386
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=73.76 E-value=6.1 Score=36.44 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=12.9
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+||||+|+++++.
T Consensus 10 GaGK~T~A~~La~~ 23 (178)
T COG0563 10 GAGKSTLAKKLAKK 23 (178)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999983
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.70 E-value=28 Score=36.99 Aligned_cols=13 Identities=38% Similarity=0.307 Sum_probs=11.8
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||.|.+++.
T Consensus 110 GvGKTTtaaKLA~ 122 (429)
T TIGR01425 110 GSGKTTTCTKLAY 122 (429)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998886
No 388
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.47 E-value=14 Score=34.85 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||++.++..
T Consensus 43 GsGKSTLl~~l~G~ 56 (202)
T cd03233 43 GSGCSTLLKALANR 56 (202)
T ss_pred CCCHHHHHHHhccc
Confidence 89999999999874
No 389
>PRK14974 cell division protein FtsY; Provisional
Probab=73.45 E-value=11 Score=38.57 Aligned_cols=79 Identities=14% Similarity=-0.036 Sum_probs=36.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC---ChhhHHH-HHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTGSAP---DVAEFQS-LMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~~~~~l~~~r~Llv 75 (711)
|+||||.+.+++. .....=..++.+...... ....-++..+..++.... ...+... ....+...-....=+++
T Consensus 150 GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVL 227 (336)
T PRK14974 150 GTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVL 227 (336)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 8999998888887 333321134445433211 122233445555543211 1122222 22222222222233899
Q ss_pred EeCCCC
Q 039822 76 LDDVWN 81 (711)
Q Consensus 76 lDdv~~ 81 (711)
+|-+..
T Consensus 228 IDTaGr 233 (336)
T PRK14974 228 IDTAGR 233 (336)
T ss_pred EECCCc
Confidence 999844
No 390
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=73.45 E-value=9.9 Score=35.60 Aligned_cols=13 Identities=54% Similarity=0.606 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 13 GsGKsT~~~~L~~ 25 (195)
T TIGR00041 13 GAGKTTQANLLKK 25 (195)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 391
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=73.30 E-value=13 Score=42.19 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=26.1
Q ss_pred CCEEEEEecchhhhhhh--CC---cCeEECCCCChhhHHHHHHHHhc
Q 039822 100 GSKILITTRKETVACIM--GS---TDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 100 ~s~iivTtR~~~~~~~~--~~---~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
+.-+|.||...+..+.. .+ ...+.++..+.++-.+++.....
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 44555577766544321 11 45777888888877788776653
No 392
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=73.30 E-value=9.6 Score=36.83 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=21.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+|||++|.+++.+ ....-..++|++.....
T Consensus 30 G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 30 GTGKTIFCLHFAYK--GLRDGDPVIYVTTEESR 60 (229)
T ss_pred CCChHHHHHHHHHH--HHhcCCeEEEEEccCCH
Confidence 89999999988762 22233478899875543
No 393
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=73.23 E-value=13 Score=33.94 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=34.5
Q ss_pred HHHHHHHHcCC-ceEEEEEeCCC---CCCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 59 LMQHIQEFVEG-EKFLLVLDDVW---NEDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 59 ~~~~~~~~l~~-~r~LlvlDdv~---~~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
..+..++.+.. .-=|+|||.+- +...-+.+.+...+.....+..||+|=|+.
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 33444555544 45599999972 222345556666677777788999999985
No 394
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=73.08 E-value=6.8 Score=35.46 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 8 GsGKSTla~~l~~ 20 (163)
T TIGR01313 8 GSGKSTIASALAH 20 (163)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 395
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=72.95 E-value=2.8 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.3
Q ss_pred CccHHHHHHHHhcChhhhcc-CCc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEK 23 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~ 23 (711)
|+||||++.++.+ ..+.. |..
T Consensus 15 GvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 15 GVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred CccHHHHHHHHHH--HHHhcCcee
Confidence 8999999999998 44444 653
No 396
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=72.93 E-value=8.3 Score=33.79 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=22.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||++.+++. +..-. |+. +..+.+.+-...|.+-.
T Consensus 5 G~GKStvg~~lA~--~lg~~-----fid-GDdlHp~aNi~KM~~Gi 42 (161)
T COG3265 5 GSGKSTVGSALAE--RLGAK-----FID-GDDLHPPANIEKMSAGI 42 (161)
T ss_pred ccCHHHHHHHHHH--HcCCc-----eec-ccccCCHHHHHHHhCCC
Confidence 8999999999998 45433 333 33344444444444433
No 397
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=72.84 E-value=2 Score=36.70 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|.||||+++.+++.
T Consensus 25 GaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 25 GAGKTTFVRGLARA 38 (123)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999873
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.64 E-value=12 Score=37.15 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=37.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~LlvlDd 78 (711)
|+||||++..+.. .....=..+.+++..... ....-.+.....++.......+.......+.+.-+ ++.=++++|-
T Consensus 85 g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt 162 (270)
T PRK06731 85 GVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 162 (270)
T ss_pred CCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 8999999998886 333221346667655332 11111122222222211111222333333332211 2456889999
Q ss_pred CCCC
Q 039822 79 VWNE 82 (711)
Q Consensus 79 v~~~ 82 (711)
....
T Consensus 163 ~Gr~ 166 (270)
T PRK06731 163 AGKN 166 (270)
T ss_pred CCCC
Confidence 8543
No 399
>PRK06936 type III secretion system ATPase; Provisional
Probab=72.48 E-value=12 Score=39.82 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCh--hh--HHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTG--------SAPDV--AE--FQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~~--~~--~~~~~~~~~~~l 67 (711)
|+|||||+..+++. .. -+.++++-+++... ..++.+..+..-.. ..++. .. .--..-.+.+++
T Consensus 172 G~GKStLl~~Ia~~--~~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyf 247 (439)
T PRK06936 172 GGGKSTLLASLIRS--AE--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYF 247 (439)
T ss_pred CCChHHHHHHHhcC--CC--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999983 22 24566777776553 44444443332110 11110 00 000111133333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++|++
T Consensus 248 rd~G~~Vll~~Dsl 261 (439)
T PRK06936 248 RDQGKRVLLLMDSV 261 (439)
T ss_pred HHcCCCEEEeccch
Confidence 589999999998
No 400
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=72.36 E-value=9 Score=35.94 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=36.6
Q ss_pred CccHHHHHHHHhcChhhhc-cCC---ceEEEEeCCCCCHHHHHHHHHHHh----cCCCCChhhHHHHHHHHHHHcCCceE
Q 039822 1 GIGKTTLAQLAYNNDDVKN-HFE---KRIWVCVSDPFDEFRIARSIIEAL----TGSAPDVAEFQSLMQHIQEFVEGEKF 72 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~-~F~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~~~l~~~r~ 72 (711)
|+||||+|+++.. .... ... .+..+.............. .... ....+..-+.+...+.+....+++.+
T Consensus 9 gSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~i 85 (194)
T PF00485_consen 9 GSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKALKNGGSI 85 (194)
T ss_dssp TSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSCE
T ss_pred CCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHHhCCCcc
Confidence 8999999999997 4432 222 2455554443332222222 1111 11122344556666666666566654
Q ss_pred EE
Q 039822 73 LL 74 (711)
Q Consensus 73 Ll 74 (711)
-+
T Consensus 86 ~~ 87 (194)
T PF00485_consen 86 EI 87 (194)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=72.23 E-value=16 Score=35.41 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=23.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSI 42 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 42 (711)
|+||||+|.+++... .... ..++|++... +..++.+.+
T Consensus 34 G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 34 STGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 899999998877631 1222 4567777444 445555555
No 402
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.16 E-value=14 Score=40.75 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=18.1
Q ss_pred cCeEECCCCChhhHHHHHHHHhcC
Q 039822 119 TDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 119 ~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
.+.+.++.-+.+.-.++|+.++.+
T Consensus 594 D~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 594 DRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ceeEeecCccHHHHHHHHHHHHhc
Confidence 467788877777788888877643
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.16 E-value=12 Score=39.74 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=11.8
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||++.+++.
T Consensus 201 G~GKTTtlakLA~ 213 (420)
T PRK14721 201 GVGKTTTTAKLAA 213 (420)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998876
No 404
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=72.02 E-value=17 Score=36.21 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=39.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCCC---CChhhH-HHHHHHHHHHcCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTGSA---PDVAEF-QSLMQHIQEFVEGEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~---~~~~~~-~~~~~~~~~~l~~~r~Llv 75 (711)
|+||||.+.+++. .....=..+.+++...... ..+-++..++..+... ....+. ......+.....+..=++|
T Consensus 82 G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~Vi 159 (272)
T TIGR00064 82 GVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVL 159 (272)
T ss_pred CCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 8999999999987 4444333566776553221 1122222333333110 011112 2222334333344456888
Q ss_pred EeCCCC
Q 039822 76 LDDVWN 81 (711)
Q Consensus 76 lDdv~~ 81 (711)
+|-...
T Consensus 160 IDT~G~ 165 (272)
T TIGR00064 160 IDTAGR 165 (272)
T ss_pred EeCCCC
Confidence 888743
No 405
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=71.96 E-value=5.9 Score=36.62 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=18.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+||||+|..+.. .....-..+..++..
T Consensus 9 gsGKttla~~l~~--~l~~~~~~~~~i~~D 36 (179)
T cd02028 9 GSGKTTFAKKLSN--QLRVNGIGPVVISLD 36 (179)
T ss_pred CCCHHHHHHHHHH--HHHHcCCCEEEEehh
Confidence 8999999999997 443332334445433
No 406
>PRK08149 ATP synthase SpaL; Validated
Probab=71.67 E-value=12 Score=39.57 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=39.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcC--------CCCC--hh--hHHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-PFDEFRIARSIIEALTG--------SAPD--VA--EFQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~--------~~~~--~~--~~~~~~~~~~~~l 67 (711)
|+|||||+..++... .-+.+++..+.. ..+..++....+..... ..+. .. ........+.+++
T Consensus 161 G~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~f 236 (428)
T PRK08149 161 GCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYF 236 (428)
T ss_pred CCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHH
Confidence 899999999998721 223334444443 33455666666553221 1111 00 0011112223333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++||+
T Consensus 237 r~~G~~Vll~~Dsl 250 (428)
T PRK08149 237 RDQGKRVVLFIDSM 250 (428)
T ss_pred HHcCCCEEEEccch
Confidence 588999999998
No 407
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=71.64 E-value=11 Score=35.59 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchhhhh
Q 039822 58 SLMQHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKETVAC 114 (711)
Q Consensus 58 ~~~~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~~~~ 114 (711)
...-.+.+.+-.++=++++|+.... +......+...+... ..+.-||++|.+.+...
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3444466666677789999997332 122233333333322 13667888888876654
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.48 E-value=4 Score=39.01 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=28.9
Q ss_pred CCceEEEEEeCCCCCCcc-Cc----hhhHhhhccCC-CCCEEEEEecchhhhhhh
Q 039822 68 EGEKFLLVLDDVWNEDYC-KW----EPFYYCLKNCL-YGSKILITTRKETVACIM 116 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~-~~----~~~~~~l~~~~-~~s~iivTtR~~~~~~~~ 116 (711)
..++.|+++|........ +. ..+...+...+ .+..+|+||-+.+++...
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 367899999998654321 11 12223333322 245799999988776553
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.41 E-value=10 Score=40.53 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=39.1
Q ss_pred CccHHHHHHHHhcChhhh--ccCCceEEEEeCCCCC-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVK--NHFEKRIWVCVSDPFD-EFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~--~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+||||++.+++. ... ..-..+..|+...... ...-++...+.++.......+.++....+.+ +. ..=++++|
T Consensus 231 GvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~-~~DlVlID 306 (424)
T PRK05703 231 GVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR-DCDVILID 306 (424)
T ss_pred CCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-CCCEEEEe
Confidence 8999999998887 333 2334677777654321 1122222233333222112223334444433 33 35688899
Q ss_pred CCCC
Q 039822 78 DVWN 81 (711)
Q Consensus 78 dv~~ 81 (711)
....
T Consensus 307 t~G~ 310 (424)
T PRK05703 307 TAGR 310 (424)
T ss_pred CCCC
Confidence 7633
No 410
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=71.30 E-value=22 Score=38.18 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=27.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|..++.+...... ..++|++... +..++...++...
T Consensus 204 g~GKT~~al~ia~~~a~~~g-~~v~~fSlEm--~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 204 SMGKTTLALNIAENVALREG-KPVLFFSLEM--SAEQLGERLLASK 246 (421)
T ss_pred CCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHHHH
Confidence 89999999999863222222 3577776553 5555566655544
No 411
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=71.09 E-value=3.5 Score=40.87 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=26.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+|||++|.++.. +.......++||+..+.+
T Consensus 33 GsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 33 GTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 8999999999999 677778899999887643
No 412
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=70.94 E-value=14 Score=40.04 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=40.9
Q ss_pred CccHHHHH-HHHhcChhhhccCCce-EEEEeCCCCC-HHHHHHHHHHHhcC--------CCCChh--h--HHHHHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEKR-IWVCVSDPFD-EFRIARSIIEALTG--------SAPDVA--E--FQSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~~-~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~~~--~--~~~~~~~~~~ 65 (711)
|+|||+|| ..+.+ . ...+.+ +++-+++... ..++.+.+...-.. ..++.. . .--....+.+
T Consensus 171 g~GKt~Lal~~i~~--~--~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAE 246 (501)
T TIGR00962 171 QTGKTAVAIDTIIN--Q--KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAE 246 (501)
T ss_pred CCCccHHHHHHHHh--h--cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 89999996 55555 1 234554 7888877554 55666665553211 111100 0 0011112333
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++.+|+|+||+
T Consensus 247 yfrd~G~~VLlv~Ddl 262 (501)
T TIGR00962 247 YFRDNGKHALIIYDDL 262 (501)
T ss_pred HHHHcCCCEEEEecch
Confidence 33 478999999998
No 413
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=70.69 E-value=13 Score=37.98 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=39.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcC--------CCCC--hhh--HHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS-DPFDEFRIARSIIEALTG--------SAPD--VAE--FQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~--------~~~~--~~~--~~~~~~~~~~~l 67 (711)
|+|||||++.++.. ... +..++.-++ +..+..++....+..-.. ..+. ... .....-.+.+++
T Consensus 79 G~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyf 154 (326)
T cd01136 79 GVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYF 154 (326)
T ss_pred CCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999973 222 233444444 344555555555443211 1111 000 011111223333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++.+|+++||+
T Consensus 155 r~~g~~Vll~~Dsl 168 (326)
T cd01136 155 RDQGKDVLLLMDSL 168 (326)
T ss_pred HHcCCCeEEEeccc
Confidence 588999999998
No 414
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=70.67 E-value=5.1 Score=37.83 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=32.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHHHcCCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL--TGSAPDVAEFQSLMQHIQEFVEGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~~~l~~~r 71 (711)
|+||||+|+++++ .+.... +.-++...... ..-........ .-..+..-+.+-..+.+...+.+++
T Consensus 18 gSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 18 GSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 7999999999998 555442 22222111111 00011111111 1122334456666677777777766
No 415
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=70.62 E-value=2.2 Score=35.51 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|..++.
T Consensus 8 G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 8 GIGKSTLAKELAK 20 (107)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999988
No 416
>PRK13973 thymidylate kinase; Provisional
Probab=70.42 E-value=18 Score=34.47 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||.++.+++
T Consensus 13 GsGKtTq~~~l~~ 25 (213)
T PRK13973 13 GAGKSTQIRLLAE 25 (213)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 417
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=70.38 E-value=17 Score=39.11 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=39.5
Q ss_pred CccHHHHHH-HHhcChhhhccCCce-EEEEeCCCC-CHHHHHHHHHHHhcCC-------CCChhhHHH-----HHHHHHH
Q 039822 1 GIGKTTLAQ-LAYNNDDVKNHFEKR-IWVCVSDPF-DEFRIARSIIEALTGS-------APDVAEFQS-----LMQHIQE 65 (711)
Q Consensus 1 GiGKTtla~-~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~~~~ 65 (711)
|+|||+||. .+.+ . ..-+.+ +++-+++.. +..++.+.+...-... ..+...... ....+.+
T Consensus 151 g~GKt~Lal~~I~~--q--~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAE 226 (485)
T CHL00059 151 QTGKTAVATDTILN--Q--KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE 226 (485)
T ss_pred CCCHHHHHHHHHHh--c--ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHH
Confidence 899999965 4544 1 233444 677777555 4556666555432110 101100000 0111233
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++++|+|+||+
T Consensus 227 yfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 227 YFMYRGRHTLIIYDDL 242 (485)
T ss_pred HHHHcCCCEEEEEcCh
Confidence 33 578999999998
No 418
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=70.36 E-value=12 Score=40.45 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=21.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||||+.+++.. ....=..++||+..+.
T Consensus 104 GsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 104 GIGKSTLLLQVACQ--LAKNQMKVLYVSGEES 133 (454)
T ss_pred CCCHHHHHHHHHHH--HHhcCCcEEEEECcCC
Confidence 89999999999873 3332236889886654
No 419
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.36 E-value=6.1 Score=40.62 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||.+|+.++.
T Consensus 158 GcGKTllAraiA~ 170 (413)
T PLN00020 158 GQGKSFQCELVFK 170 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 420
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=70.33 E-value=15 Score=34.48 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=28.7
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchh
Q 039822 60 MQHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKET 111 (711)
Q Consensus 60 ~~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~ 111 (711)
.-.+.+.+-.++=++++|+.... +......+...+... ..|.-||++|.+..
T Consensus 119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 33455666666778999997332 112223333333321 23667888887763
No 421
>PRK08006 replicative DNA helicase; Provisional
Probab=70.11 E-value=18 Score=39.18 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=26.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|..++.+...+.. ..+++++.. -+..++...++...
T Consensus 234 gmGKTafalnia~~~a~~~g-~~V~~fSlE--M~~~ql~~Rlla~~ 276 (471)
T PRK08006 234 SMGKTTFAMNLCENAAMLQD-KPVLIFSLE--MPGEQIMMRMLASL 276 (471)
T ss_pred CCCHHHHHHHHHHHHHHhcC-CeEEEEecc--CCHHHHHHHHHHHh
Confidence 79999999998874322222 246666544 44555555555543
No 422
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=69.95 E-value=2.2 Score=39.78 Aligned_cols=13 Identities=54% Similarity=0.641 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||||+.+++
T Consensus 14 G~GKSTLa~~La~ 26 (216)
T COG1428 14 GAGKSTLAQALAE 26 (216)
T ss_pred ccCHHHHHHHHHH
Confidence 8999999999998
No 423
>PRK06217 hypothetical protein; Validated
Probab=69.77 E-value=5.8 Score=36.84 Aligned_cols=14 Identities=36% Similarity=0.416 Sum_probs=12.8
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+||||+|+++...
T Consensus 11 GsGKSTla~~L~~~ 24 (183)
T PRK06217 11 GSGTTTLGAALAER 24 (183)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999973
No 424
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=69.72 E-value=2.5 Score=36.65 Aligned_cols=14 Identities=50% Similarity=0.546 Sum_probs=12.8
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|.||||+++.+++.
T Consensus 32 GaGKTtl~~~l~~~ 45 (133)
T TIGR00150 32 GAGKTTLVQGLLQG 45 (133)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999984
No 425
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=69.25 E-value=42 Score=32.92 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=39.4
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhh-CCcCeEECCCC
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIM-GSTDVISVNVL 127 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~-~~~~~~~l~~L 127 (711)
+++=++|+|+++..+...+..+...+..-.+++.+|++|.+. .+...+ ...+.+.+.+.
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 345667899998877788888888877666677777777654 444333 22345666554
No 426
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=68.93 E-value=7.6 Score=35.37 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCceE-EEEEeCC---CCCCccCchhhHhhhccCCCCCEEEEEecchh
Q 039822 57 QSLMQHIQEFVEGEKF-LLVLDDV---WNEDYCKWEPFYYCLKNCLYGSKILITTRKET 111 (711)
Q Consensus 57 ~~~~~~~~~~l~~~r~-LlvlDdv---~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~ 111 (711)
....+..++.+...+| |+|||.+ .+...-+.+.+...+........+|+|=|...
T Consensus 82 ~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 82 REGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 3444555666665554 9999997 22233455666666776777889999999863
No 427
>PRK05922 type III secretion system ATPase; Validated
Probab=68.90 E-value=19 Score=38.32 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=38.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC--------CCC--hh--hHHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTGS--------APD--VA--EFQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~--~~--~~~~~~~~~~~~l 67 (711)
|+|||||++.++.. . ..+...++.++... ...+.+.+........ .++ .. ......-.+.+++
T Consensus 167 G~GKSTLL~~Ia~~--~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf 242 (434)
T PRK05922 167 GSGKSSLLSTIAKG--S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF 242 (434)
T ss_pred CCChHHHHHHHhcc--C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999873 1 22334444444433 3344444443332211 110 00 0011122233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++|++
T Consensus 243 rd~G~~VLl~~Dsl 256 (434)
T PRK05922 243 RDQGHRVLFIMDSL 256 (434)
T ss_pred HHcCCCEEEeccch
Confidence 588999999998
No 428
>PRK07933 thymidylate kinase; Validated
Probab=68.86 E-value=14 Score=35.20 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 10 GsGKST~~~~L~~ 22 (213)
T PRK07933 10 GAGKRTLTEALRA 22 (213)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 429
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=68.61 E-value=7.6 Score=36.39 Aligned_cols=13 Identities=54% Similarity=0.693 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+++
T Consensus 10 GsGKtT~~~~L~~ 22 (200)
T cd01672 10 GAGKTTLIELLAE 22 (200)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 430
>PTZ00088 adenylate kinase 1; Provisional
Probab=68.50 E-value=6.1 Score=38.15 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 16 GsGK~T~a~~La~ 28 (229)
T PTZ00088 16 GVGKGTFAEILSK 28 (229)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999887
No 431
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=68.46 E-value=16 Score=38.76 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=24.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSII 43 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~ 43 (711)
|+|||||++.++.. . +.+..+++.++... ...++..+..
T Consensus 165 G~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~~ 204 (433)
T PRK07594 165 GVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFTL 204 (433)
T ss_pred CCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHhh
Confidence 89999999999873 2 23445555555433 3445555543
No 432
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=68.44 E-value=4 Score=40.09 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.8
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
||||||+++.+.+.
T Consensus 4 GvGKTT~~~~l~~~ 17 (281)
T PF00693_consen 4 GVGKTTTLKALAEA 17 (281)
T ss_dssp TSSHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHc
Confidence 89999999999973
No 433
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=68.40 E-value=14 Score=39.18 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=38.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhc--------CCCCC-h-hh--HHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP-FDEFRIARSIIEALT--------GSAPD-V-AE--FQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~--------~~~~~-~-~~--~~~~~~~~~~~l 67 (711)
|+|||||+..++.. .. .+..+++.++.. ....++.+.....-. ...++ . .. .--..-.+.+++
T Consensus 147 G~GKTtLl~~I~~~--~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyf 222 (411)
T TIGR03496 147 GVGKSTLLGMMARY--TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYF 222 (411)
T ss_pred CCCHHHHHHHHhcC--CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999988873 21 133444555543 334555554443311 01111 0 00 011111233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++||+
T Consensus 223 r~~G~~Vll~~Dsl 236 (411)
T TIGR03496 223 RDQGKDVLLLMDSL 236 (411)
T ss_pred HHCCCCEEEEEeCh
Confidence 588999999998
No 434
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.33 E-value=22 Score=33.17 Aligned_cols=53 Identities=21% Similarity=0.088 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC-CCCCEEEEEecchh
Q 039822 59 LMQHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC-LYGSKILITTRKET 111 (711)
Q Consensus 59 ~~~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~-~~~s~iivTtR~~~ 111 (711)
..-.+.+.+-.+.=++++|+.... +......+...+... ..|..||++|.+.+
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 333455666667778889986322 112222233333221 13667888887764
No 435
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=8.7 Score=37.61 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|.|||-||++|++
T Consensus 229 GTGKTLLAKAVAN 241 (440)
T KOG0726|consen 229 GTGKTLLAKAVAN 241 (440)
T ss_pred CCchhHHHHHHhc
Confidence 8899999999999
No 436
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=67.95 E-value=3.1 Score=36.54 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccC-CCCCEEEEEecch
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNC-LYGSKILITTRKE 110 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~-~~~s~iivTtR~~ 110 (711)
+.--++++|+..-+.+....+...+... ....|+|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 4445778998665554555555555532 4577999999754
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.91 E-value=2.5 Score=48.91 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=51.3
Q ss_pred CceEEEEEeCCCCCCc-cCchhh----HhhhccCCCCCEEEEEecchhhhhhhCCcCeEECCCCChhhHHHHHHHHhcCC
Q 039822 69 GEKFLLVLDDVWNEDY-CKWEPF----YYCLKNCLYGSKILITTRKETVACIMGSTDVISVNVLSEMECWSVFESLAFFG 143 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~-~~~~~~----~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 143 (711)
+.+-|+++|....... .+-..+ ...+.. .|+.+|+||-..++.........+.-..+..++. .+-..+-...
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~-~l~~~Ykl~~ 482 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENASVEFDEE-TLRPTYRLLI 482 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC-cCcEEEEEee
Confidence 4678999999855432 112222 222322 3789999999987776543222111111111100 1111111111
Q ss_pred CCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 039822 144 NSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSK 180 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 180 (711)
+.+. ...|-+|++.+ |+|-.+.--|..+-..
T Consensus 483 G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 483 GIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 1111 23466677766 7887777777766544
No 438
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=67.88 E-value=17 Score=35.21 Aligned_cols=36 Identities=17% Similarity=0.020 Sum_probs=24.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRI 38 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 38 (711)
|+||||+|..++. .....=..++-|+.....+....
T Consensus 12 GvGKTT~a~nLA~--~la~~G~~VlliD~DpQ~s~~~w 47 (231)
T PRK13849 12 GAGKTTALMGLCA--ALASDGKRVALFEADENRPLTRW 47 (231)
T ss_pred CccHHHHHHHHHH--HHHhCCCcEEEEeCCCCCCHHHH
Confidence 9999999999887 33322235677777666655443
No 439
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=67.78 E-value=14 Score=42.16 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=67.1
Q ss_pred CccHHHHHHHHhcChhhhcc-CC----ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FE----KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|||||++|.-++. ++... -+ ..--+++ .|.....+... ..+.++..+.+.+.++ .++..|
T Consensus 201 GVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sL-----------D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vIL 266 (786)
T COG0542 201 GVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSL-----------DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVIL 266 (786)
T ss_pred CCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEe-----------cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEE
Confidence 8999999988887 44222 11 1111110 11112223332 2455666666666664 458999
Q ss_pred EEeCC----CCCC----ccCchhhHhhhccCCCCCEEEEEecchh---hhh---hhCCcCeEECCCCChhhHHHHHHHH
Q 039822 75 VLDDV----WNED----YCKWEPFYYCLKNCLYGSKILITTRKET---VAC---IMGSTDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 75 vlDdv----~~~~----~~~~~~~~~~l~~~~~~s~iivTtR~~~---~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
++|.+ .-.. ..+...+..+-...+.-..|--||-++. +.. .....+.+.|...+.+++..+++-.
T Consensus 267 FIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 267 FIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred EEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 99996 1111 1222333333223333345666665432 111 1123679999999999999999754
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=67.73 E-value=30 Score=32.61 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=27.1
Q ss_pred CceEEEEEeCCCCCCc-cCchhh----HhhhccCCCCCEEEEEecchhhhhhh
Q 039822 69 GEKFLLVLDDVWNEDY-CKWEPF----YYCLKNCLYGSKILITTRKETVACIM 116 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~-~~~~~~----~~~l~~~~~~s~iivTtR~~~~~~~~ 116 (711)
.++-++++|....... .....+ ...+. ..+..+|++|-+.+.+...
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 3788999999743221 111112 22222 2367899999988777654
No 441
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=67.69 E-value=22 Score=38.33 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=42.2
Q ss_pred CccHHHHH-HHHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCChhhH-----HHHHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEALTGS-------APDVAEF-----QSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~~ 65 (711)
|+|||||| ..+.+ + ..-+. ++++-+++... ..++.+.+...-... ..+.... --....+.+
T Consensus 172 g~GKT~Lal~~I~~--q--~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAE 247 (497)
T TIGR03324 172 QTGKTAIAIDTILN--Q--KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGE 247 (497)
T ss_pred CCCHHHHHHHHHHH--h--cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 89999997 46666 2 23454 67888877654 556666655532111 1111000 011122334
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++.+|+|+||+
T Consensus 248 yfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 248 HFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHhCCCCEEEEEcCh
Confidence 44 588999999998
No 442
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=67.62 E-value=9.6 Score=42.53 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEec
Q 039822 73 LLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTR 108 (711)
Q Consensus 73 LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR 108 (711)
+||+|.+.-.+...+..+...++ +++|+|+.=-
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD 294 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALP---PNTKLILLGD 294 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcC---CCCEEEEECC
Confidence 88999984444444455555444 4678776543
No 443
>PRK05973 replicative DNA helicase; Provisional
Probab=67.57 E-value=9 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=21.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||++|.+++.+ ....=..++|++...+
T Consensus 74 G~GKT~lalqfa~~--~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 74 GHGKTLLGLELAVE--AMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC
Confidence 89999999999873 3333345778876665
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=67.40 E-value=7.2 Score=40.42 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=39.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||+++.+.+ .+.......++.- .++.... .... ..+-.+..-..........++..++...=.|++|.+.
T Consensus 132 GSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEir 205 (343)
T TIGR01420 132 GSGKSTTLASMID--YINKNAAGHIITI-EDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALREDPDVILIGEMR 205 (343)
T ss_pred CCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccCCCEEEEeCCC
Confidence 8999999999887 4554555555442 2221111 0000 0000000001111234455677788888899999994
Q ss_pred C
Q 039822 81 N 81 (711)
Q Consensus 81 ~ 81 (711)
+
T Consensus 206 d 206 (343)
T TIGR01420 206 D 206 (343)
T ss_pred C
Confidence 4
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=67.08 E-value=28 Score=33.46 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.0
Q ss_pred CceEEEEEeCCCCCCc--cC---chhhHhhhccCCCCCEEEEEecchhhhhhh
Q 039822 69 GEKFLLVLDDVWNEDY--CK---WEPFYYCLKNCLYGSKILITTRKETVACIM 116 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~--~~---~~~~~~~l~~~~~~s~iivTtR~~~~~~~~ 116 (711)
+++.|+++|....... +. ...+...+... .++.+|++|-..+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4689999999744321 11 11223333332 478999999998876543
No 446
>PRK09099 type III secretion system ATPase; Provisional
Probab=67.01 E-value=13 Score=39.52 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=39.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC--------CCCC--hhh--HHHHHHHHHHHc-
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTG--------SAPD--VAE--FQSLMQHIQEFV- 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~--------~~~~--~~~--~~~~~~~~~~~l- 67 (711)
|+|||||++.++.... . -.++++..-.+.....++.+.+...-.. ..++ ... ..-..-.+.+++
T Consensus 173 G~GKTtLl~~ia~~~~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfr 249 (441)
T PRK09099 173 GVGKSTLMGMFARGTQ--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFR 249 (441)
T ss_pred CCCHHHHHHHHhCCCC--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999987321 1 1234444334444555555555443211 1111 000 011112233333
Q ss_pred -CCceEEEEEeCC
Q 039822 68 -EGEKFLLVLDDV 79 (711)
Q Consensus 68 -~~~r~LlvlDdv 79 (711)
+++.+|+++|++
T Consensus 250 d~G~~VLl~~Dsl 262 (441)
T PRK09099 250 DRGLRVLLMMDSL 262 (441)
T ss_pred HcCCCEEEeccch
Confidence 488999999998
No 447
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=67.00 E-value=5.2 Score=39.57 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=23.7
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+.+- ..++.|+.....
T Consensus 13 GvGKTT~a~nLa~--~La~~~~~kVLliDlDpQ~ 44 (259)
T COG1192 13 GVGKTTTAVNLAA--ALAKRGGKKVLLIDLDPQG 44 (259)
T ss_pred CccHHHHHHHHHH--HHHHhcCCcEEEEeCCCcc
Confidence 9999999999998 555333 578888866543
No 448
>PRK03846 adenylylsulfate kinase; Provisional
Probab=66.86 E-value=11 Score=35.49 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=17.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC 28 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~ 28 (711)
|+||||+|+.+.. .....=.++++++
T Consensus 34 GsGKSTla~~l~~--~l~~~~~~~~~ld 59 (198)
T PRK03846 34 GSGKSTVAGALEE--ALHELGVSTYLLD 59 (198)
T ss_pred CCCHHHHHHHHHH--HHHhCCCCEEEEc
Confidence 8999999999987 3332212345553
No 449
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=66.78 E-value=30 Score=35.05 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 63 IQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
+.+.+-.++=++++|..... +......+...+.....+..||+||.+.+.+.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45555566789999997332 11222233333333223567999998876443
No 450
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=66.59 E-value=28 Score=34.14 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=31.0
Q ss_pred CccHHHHHHHHhcC---hhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNN---DDVKNHFE-KRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~---~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||.|+.+++-- |+-.+... +.+|++....+....+++ +..++
T Consensus 112 g~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~q-L~~~~ 160 (351)
T KOG1564|consen 112 GCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQ-LSHTL 160 (351)
T ss_pred CCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHH-HHHhc
Confidence 89999999998864 33344444 678998888777766543 34444
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.59 E-value=16 Score=39.48 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=36.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP-FDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+||||.+.+++........-..+..|+.... ....+-++...+..+.......+..+....+ ..++++ -.+++|-.
T Consensus 266 GvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d~-d~VLIDTa 343 (484)
T PRK06995 266 GVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRNK-HIVLIDTI 343 (484)
T ss_pred CccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccCC-CeEEeCCC
Confidence 89999999999973212221224556654432 1222333444444433221111111222222 233443 46777776
Q ss_pred C
Q 039822 80 W 80 (711)
Q Consensus 80 ~ 80 (711)
.
T Consensus 344 G 344 (484)
T PRK06995 344 G 344 (484)
T ss_pred C
Confidence 3
No 452
>PRK10646 ADP-binding protein; Provisional
Probab=66.54 E-value=3.1 Score=36.99 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|.||||+++.+++-
T Consensus 38 GaGKTtf~rgl~~~ 51 (153)
T PRK10646 38 GAGKTTFSRGFLQA 51 (153)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999873
No 453
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.09 E-value=28 Score=33.81 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=26.9
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeCCCCCHHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVSDPFDEFRIARSIIEA 45 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~ 45 (711)
|+|||++|.+++.+ .... =..++|++... +..++.+.++..
T Consensus 23 G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 23 SMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 89999999998873 3322 23678887766 444555555443
No 454
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=65.87 E-value=3.1 Score=37.60 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.6
Q ss_pred CccHHHHHHHHhcChhhhcc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH 20 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~ 20 (711)
|+||||+++.++. +..-.
T Consensus 2 GsGKStvg~~lA~--~L~~~ 19 (158)
T PF01202_consen 2 GSGKSTVGKLLAK--RLGRP 19 (158)
T ss_dssp TSSHHHHHHHHHH--HHTSE
T ss_pred CCcHHHHHHHHHH--HhCCC
Confidence 8999999999998 44433
No 455
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=65.82 E-value=3.6 Score=36.21 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 9 gsGKSt~a~~l~~ 21 (143)
T PF13671_consen 9 GSGKSTLAKRLAK 21 (143)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999885
No 456
>PRK08506 replicative DNA helicase; Provisional
Probab=65.79 E-value=36 Score=37.03 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|..++.+ ....=..++|++.. -+..++...++...
T Consensus 202 g~GKT~fal~ia~~--~~~~g~~V~~fSlE--Ms~~ql~~Rlla~~ 243 (472)
T PRK08506 202 SMGKTTLCLNMALK--ALNQDKGVAFFSLE--MPAEQLMLRMLSAK 243 (472)
T ss_pred CCChHHHHHHHHHH--HHhcCCcEEEEeCc--CCHHHHHHHHHHHh
Confidence 89999999999874 32221246677554 35566666665544
No 457
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=65.24 E-value=3.4 Score=37.69 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++++++
T Consensus 9 G~GKTTll~k~i~ 21 (168)
T PF03266_consen 9 GVGKTTLLKKVIE 21 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 458
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=65.18 E-value=22 Score=38.73 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=24.2
Q ss_pred CccHHHHHH-HHhcChhhhccCCce-EEEEeCCCCC-HHHHHHHHHH
Q 039822 1 GIGKTTLAQ-LAYNNDDVKNHFEKR-IWVCVSDPFD-EFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~-~~~~~~~~~~~F~~~-~wv~~~~~~~-~~~~~~~i~~ 44 (711)
|+|||+||. .+.+ + ..-+.+ +++-+++... ..++.+.+..
T Consensus 172 g~GKt~lal~~i~~--~--~~~dv~~V~~~IGer~~ev~e~~~~~~~ 214 (502)
T PRK09281 172 QTGKTAIAIDTIIN--Q--KGKDVICIYVAIGQKASTVAQVVRKLEE 214 (502)
T ss_pred CCCchHHHHHHHHH--h--cCCCeEEEEEEecCChHHHHHHHHHHhh
Confidence 899999954 4443 1 233454 7777876654 4555555544
No 459
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=65.17 E-value=11 Score=43.27 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCC-----------CCCEEEEEecc
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCL-----------YGSKILITTRK 109 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~-----------~~s~iivTtR~ 109 (711)
..-.|+||+|..-.......+...+.... .+.|||.||..
T Consensus 470 ~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 470 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 34679999997655545555555543221 24588888864
No 460
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.14 E-value=19 Score=41.10 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=37.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+||||.+.+++........-..+..++..... ...+-++...+.++.......+.++..+.+. .++++ =++++|=.
T Consensus 195 GvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~~-D~VLIDTA 272 (767)
T PRK14723 195 GVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGDK-HLVLIDTV 272 (767)
T ss_pred CCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcCC-CEEEEeCC
Confidence 899999999998732111112345566544322 1333344444444432222223333333333 33333 36667766
Q ss_pred C
Q 039822 80 W 80 (711)
Q Consensus 80 ~ 80 (711)
.
T Consensus 273 G 273 (767)
T PRK14723 273 G 273 (767)
T ss_pred C
Confidence 4
No 461
>PTZ00301 uridine kinase; Provisional
Probab=65.10 E-value=6 Score=37.58 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=14.4
Q ss_pred CccHHHHHHHHhcChhhhccC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF 21 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F 21 (711)
|+||||+|+++.+ ++...+
T Consensus 13 gSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 13 GSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred cCCHHHHHHHHHH--HHHhhc
Confidence 8999999998886 443333
No 462
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=64.97 E-value=6.2 Score=36.61 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=21.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||++|.+++.. ....=..++|++....
T Consensus 9 G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 9 GTGKTTFALQFLYA--GLARGEPGLYVTLEES 38 (187)
T ss_pred CCCHHHHHHHHHHH--HHHCCCcEEEEECCCC
Confidence 89999999998873 3222246888887653
No 463
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.71 E-value=4.6 Score=23.63 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=11.1
Q ss_pred CCcEEecCCCCCCccCCc
Q 039822 392 NLQRLDVTYCKNLEELPP 409 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP~ 409 (711)
+|+.|++++|. ++++|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 56677777655 666665
No 464
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=64.49 E-value=13 Score=33.04 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
+.||||+.+++...
T Consensus 26 NsGKTti~~kl~~~ 39 (185)
T KOG0073|consen 26 NSGKTTIVKKLLGE 39 (185)
T ss_pred CCCchhHHHHhcCC
Confidence 58999999999875
No 465
>PRK00698 tmk thymidylate kinase; Validated
Probab=64.22 E-value=26 Score=33.02 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 13 gsGKsT~~~~L~~ 25 (205)
T PRK00698 13 GAGKSTQIELLKE 25 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 466
>PRK06762 hypothetical protein; Provisional
Probab=64.02 E-value=3.6 Score=37.40 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+++++
T Consensus 12 GsGKST~A~~L~~ 24 (166)
T PRK06762 12 GSGKTTIAKQLQE 24 (166)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 467
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=63.90 E-value=8.1 Score=39.27 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=28.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARS 41 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 41 (711)
||||||+|.+.+- ..+.....++-|+...-.+..+++..
T Consensus 12 GVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 12 GVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 9999999998776 55555566888877766666555444
No 468
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=63.78 E-value=43 Score=30.63 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+||||+..++...
T Consensus 24 ~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 24 GSGKTTLLNRLKNG 37 (175)
T ss_dssp TSSHHHHHHHHHSS
T ss_pred ccchHHHHHHhhhc
Confidence 79999999999874
No 469
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.78 E-value=12 Score=40.66 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=35.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||.||++++. +..-. |+.++.+ +|.....+.. .+...+.+.+.-..-.+++++|+++
T Consensus 233 GCGKT~lA~AiAg--el~vP-----f~~isAp--------eivSGvSGES-----EkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 233 GCGKTSLANAIAG--ELGVP-----FLSISAP--------EIVSGVSGES-----EKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred CccHHHHHHHHhh--hcCCc-----eEeecch--------hhhcccCccc-----HHHHHHHHHHHhccCCeEEEeeccc
Confidence 8999999999998 33323 3333321 2223332222 2233333444445679999999984
Q ss_pred C
Q 039822 81 N 81 (711)
Q Consensus 81 ~ 81 (711)
-
T Consensus 293 A 293 (802)
T KOG0733|consen 293 A 293 (802)
T ss_pred c
Confidence 3
No 470
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=63.63 E-value=8.1 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=24.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 36 (711)
|+||||+|..++. .....=..++-++........
T Consensus 9 G~GKTt~a~~la~--~la~~g~~VlliD~D~~~~~~ 42 (195)
T PF01656_consen 9 GVGKTTIAANLAQ--ALARKGKKVLLIDLDPQAPNL 42 (195)
T ss_dssp TSSHHHHHHHHHH--HHHHTTS-EEEEEESTTSHHH
T ss_pred CccHHHHHHHHHh--ccccccccccccccCcccccH
Confidence 8999999999998 555544567888876544433
No 471
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=63.62 E-value=16 Score=40.32 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||++|.+++. .....=..++||+....
T Consensus 283 G~GKT~l~~~~~~--~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 283 GTGKTLLASKFAE--AACRRGERCLLFAFEES 312 (509)
T ss_pred CCCHHHHHHHHHH--HHHhCCCcEEEEEecCC
Confidence 8999999999987 33344467899987664
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=63.59 E-value=36 Score=38.97 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=32.9
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCCccC-chhhHhhhcc-CCCCCEEEEEecchhhhh
Q 039822 60 MQHIQEFVEGEKFLLVLDDVWNEDYCK-WEPFYYCLKN-CLYGSKILITTRKETVAC 114 (711)
Q Consensus 60 ~~~~~~~l~~~r~LlvlDdv~~~~~~~-~~~~~~~l~~-~~~~s~iivTtR~~~~~~ 114 (711)
.-.+.|.+-.++-+++||..-+.-+.+ -..+...+.. ....+.|+||=|...+..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 344777788888899999974432222 2223333332 223678888888776543
No 473
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=63.43 E-value=16 Score=38.97 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=38.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCC--hh--hHHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSIIEALTG--------SAPD--VA--EFQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~--~~--~~~~~~~~~~~~l 67 (711)
|+|||||++.++.. .. .+.+++..++... +..++...+...-.. ..++ .. ......-.+.+++
T Consensus 178 G~GKSTLl~~I~g~---~~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyf 253 (451)
T PRK05688 178 GVGKSVLLGMMTRF---TE-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYF 253 (451)
T ss_pred CCCHHHHHHHHhCC---CC-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999998862 11 2333344444333 345554444443211 1111 00 0111112233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++++|+++||+
T Consensus 254 rd~G~~VLl~~Dsl 267 (451)
T PRK05688 254 RDKGKNVLLLMDSL 267 (451)
T ss_pred HHCCCCEEEEecch
Confidence 588999999998
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=63.14 E-value=36 Score=37.79 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 371 GsGKSTLl~lL~g 383 (529)
T TIGR02868 371 GSGKSTLLMLLTG 383 (529)
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999976
No 475
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=54 Score=36.02 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=63.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQ-HIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~l~~~r~LlvlDdv 79 (711)
|.|||.||++++. .....| +.+... + +..+- ..+.+...+ .....-+...+.|++|.+
T Consensus 286 GtGKT~lAkava~--~~~~~f-----i~v~~~-~-------l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 286 GTGKTLLAKAVAL--ESRSRF-----ISVKGS-E-------LLSKW------VGESEKNIRELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred CCCHHHHHHHHHh--hCCCeE-----EEeeCH-H-------Hhccc------cchHHHHHHHHHHHHHcCCCcEEEEEch
Confidence 8999999999998 333443 222221 1 11111 111122222 233333577899999998
Q ss_pred CCCCc-----------cCchhhHhhhcc--CCCCCEEEEEecchhhhhhh--C--C-cCeEECCCCChhhHHHHHHHHhc
Q 039822 80 WNEDY-----------CKWEPFYYCLKN--CLYGSKILITTRKETVACIM--G--S-TDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 80 ~~~~~-----------~~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~~--~--~-~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
+.--. ....+++..+.. ...+..+|-||-..+..+.. . . ...+.++.-+.++..+.|.....
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 32110 011122222221 12233455555544433321 1 1 45888999999999999988875
Q ss_pred C
Q 039822 142 F 142 (711)
Q Consensus 142 ~ 142 (711)
.
T Consensus 425 ~ 425 (494)
T COG0464 425 D 425 (494)
T ss_pred c
Confidence 3
No 476
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=62.89 E-value=4.2 Score=36.24 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 9 GsGKST~a~~l~~ 21 (150)
T cd02021 9 GSGKSTVGKALAE 21 (150)
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 477
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=62.65 E-value=22 Score=37.71 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=37.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcC--------CCCC--hhh--HHHHHHHHHHHc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-PFDEFRIARSIIEALTG--------SAPD--VAE--FQSLMQHIQEFV 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~--------~~~~--~~~--~~~~~~~~~~~l 67 (711)
|+|||||+..++.. ... +..+..-+++ .....++....+.+-.. ..+. ... .....-.+.+++
T Consensus 147 G~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyf 222 (413)
T TIGR03497 147 GVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYF 222 (413)
T ss_pred CCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999988872 222 2222223443 33455555544433110 1111 000 011112233333
Q ss_pred --CCceEEEEEeCC
Q 039822 68 --EGEKFLLVLDDV 79 (711)
Q Consensus 68 --~~~r~LlvlDdv 79 (711)
+++.+|+++||+
T Consensus 223 r~~G~~Vll~~Dsl 236 (413)
T TIGR03497 223 RDQGKDVLLMMDSV 236 (413)
T ss_pred HHCCCCEEEEEcCc
Confidence 488999999998
No 478
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=62.59 E-value=12 Score=38.05 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=49.8
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCC-CHHHHHHHHHHHhcCC----------CCCh-----hhHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPF-DEFRIARSIIEALTGS----------APDV-----AEFQSLMQHI 63 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~----------~~~~-----~~~~~~~~~~ 63 (711)
|||||-+++.+.+ .+..... ..+|.-+++.. .-.+++.++...--.. .+.. .-..-...+.
T Consensus 157 GVGKTVl~~ELI~--Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEy 234 (468)
T COG0055 157 GVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234 (468)
T ss_pred CccceeeHHHHHH--HHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHH
Confidence 8999999999999 5665655 45677676543 4567777776642111 1111 1112223444
Q ss_pred HHHcCCceEEEEEeCCCCC
Q 039822 64 QEFVEGEKFLLVLDDVWNE 82 (711)
Q Consensus 64 ~~~l~~~r~LlvlDdv~~~ 82 (711)
.|.-.++.+|+.+||+..-
T Consensus 235 fRD~~gqdVLlFIDNIfRf 253 (468)
T COG0055 235 FRDEEGQDVLLFIDNIFRF 253 (468)
T ss_pred hhcccCCeEEEEehhhhHH
Confidence 5555678999999998543
No 479
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=62.35 E-value=4.1 Score=37.86 Aligned_cols=13 Identities=54% Similarity=0.583 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 9 gsGKTtla~~l~~ 21 (187)
T cd02024 9 NSGKTTLAKLLQR 21 (187)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 480
>COG4240 Predicted kinase [General function prediction only]
Probab=62.22 E-value=20 Score=33.90 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=44.4
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCCHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHHHcCCc
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFDEFRIARSIIEALT-----GSAPDVAEFQSLMQHIQEFVEGE 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~~~~~l~~~ 70 (711)
|+||||++..++. ...... ..+...++..-.-+..-+..++++.. .-.+..-+.+-....+....+++
T Consensus 60 GSGKStls~~i~~--~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLnai~~g~ 133 (300)
T COG4240 60 GSGKSTLSALIVR--LLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGG 133 (300)
T ss_pred CCchhhHHHHHHH--HHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHHHhcCC
Confidence 8999999999998 444444 57777877766666666667777752 11222345555666666666665
No 481
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=62.19 E-value=15 Score=39.09 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||+..++.
T Consensus 165 GaGKSTLl~~I~g 177 (434)
T PRK07196 165 GVGKSVLLGMITR 177 (434)
T ss_pred CCCccHHHHHHhc
Confidence 8999999998887
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=62.05 E-value=17 Score=38.87 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=21.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIAR 40 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 40 (711)
|+|||||+..++.. ... -.+++++.-.+..+..++..
T Consensus 168 G~GKStLl~~I~~~--~~~-~~gvI~~~Gerg~ev~e~~~ 204 (438)
T PRK07721 168 GVGKSTLMGMIARN--TSA-DLNVIALIGERGREVREFIE 204 (438)
T ss_pred CCCHHHHHHHHhcc--cCC-CeEEEEEEecCCccHHHHHH
Confidence 89999999988872 221 22445543334444554433
No 483
>PRK03839 putative kinase; Provisional
Probab=62.01 E-value=4 Score=37.79 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+++++
T Consensus 10 GsGKsT~~~~La~ 22 (180)
T PRK03839 10 GVGKTTVSKLLAE 22 (180)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 484
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=61.98 E-value=39 Score=38.14 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=29.7
Q ss_pred HHHHHcCCceEEEEEeCCCCCCc-cCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEEC
Q 039822 62 HIQEFVEGEKFLLVLDDVWNEDY-CKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISV 124 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~~~-~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l 124 (711)
.+.|.+-.++=++|||+....-+ ..-..+...+....++..||+.|.+......+ ++++.+
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~--D~ii~l 542 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA--DRILVF 542 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhC--CEEEEE
Confidence 35555556777888999744321 22223333343332344455555444444432 344444
No 485
>PRK08840 replicative DNA helicase; Provisional
Probab=61.80 E-value=34 Score=37.08 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=26.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||++|..++.+...... ..++|++.. -+..++...++...
T Consensus 227 g~GKTafalnia~~~a~~~~-~~v~~fSlE--Ms~~ql~~Rlla~~ 269 (464)
T PRK08840 227 SMGKTTFAMNLCENAAMDQD-KPVLIFSLE--MPAEQLMMRMLASL 269 (464)
T ss_pred CCchHHHHHHHHHHHHHhCC-CeEEEEecc--CCHHHHHHHHHHhh
Confidence 89999999888874322222 246666655 34556666665554
No 486
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=61.70 E-value=25 Score=38.07 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=39.9
Q ss_pred CccHHHHH-HHHhcChhhhccCCce-EEEEeCCCCC-HHHHHHHHHHHhcCC-------CCChhhHHH-----HHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEKR-IWVCVSDPFD-EFRIARSIIEALTGS-------APDVAEFQS-----LMQHIQE 65 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~~-~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~~~~ 65 (711)
|+|||+|| ..+.+ . ..-+.+ +++-+++... ..++.+.+...-... ..+...... ....+.+
T Consensus 172 g~GKt~Lal~~i~~--~--~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAE 247 (502)
T PRK13343 172 QTGKTAIAIDAIIN--Q--KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAE 247 (502)
T ss_pred CCCccHHHHHHHHh--h--cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHH
Confidence 89999996 55554 1 233444 6777776554 555555554431110 011100100 1112333
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++++|+|+||+
T Consensus 248 yfrd~G~~VLlv~Ddl 263 (502)
T PRK13343 248 YFRDQGQDALIVYDDL 263 (502)
T ss_pred HHHhCCCCEEEEecch
Confidence 33 588999999998
No 487
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=61.59 E-value=38 Score=39.16 Aligned_cols=49 Identities=27% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCC-CEEEEEecch
Q 039822 62 HIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYG-SKILITTRKE 110 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~-s~iivTtR~~ 110 (711)
.+.|.+-+++=++|||+.-.. +.+.-..+...+.....+ +.|+||-|..
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 355555566778999997432 112223333444433234 4555555554
No 488
>PRK06547 hypothetical protein; Provisional
Probab=61.55 E-value=4.3 Score=37.18 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 25 GsGKTt~a~~l~~ 37 (172)
T PRK06547 25 GSGKTTLAGALAA 37 (172)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 489
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=61.51 E-value=52 Score=31.50 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccC--CCCCEEEEEecchhhhhhhC
Q 039822 56 FQSLMQHIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNC--LYGSKILITTRKETVACIMG 117 (711)
Q Consensus 56 ~~~~~~~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~--~~~s~iivTtR~~~~~~~~~ 117 (711)
.++..-.|.|.+-..+-+|+-|.--.. +...-..+...+... ..|..||+.|-+..++..++
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344455577788888888888885221 112223333333332 24778999999999998653
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=61.43 E-value=4.5 Score=34.18 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.8
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||.+.++..
T Consensus 9 g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 9 GVGKTSLIRRLCGG 22 (119)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999999975
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=61.34 E-value=17 Score=35.22 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 43 GsGKTTl~~~L~~ 55 (229)
T PRK09270 43 GAGKSTLAEFLEA 55 (229)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 492
>PRK06820 type III secretion system ATPase; Validated
Probab=61.29 E-value=42 Score=35.87 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=18.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||||+..++.. . +-+.+++..++..
T Consensus 173 G~GKStLl~~I~~~--~--~~dv~V~~~iGer 200 (440)
T PRK06820 173 GVGKSTLLGMLCAD--S--AADVMVLALIGER 200 (440)
T ss_pred CCChHHHHHHHhcc--C--CCCEEEEEEEccC
Confidence 89999999988872 1 2234455555554
No 493
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=61.04 E-value=34 Score=31.66 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 28 GsGKstla~~l~~ 40 (184)
T TIGR00455 28 GSGKSTIANALEK 40 (184)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 494
>PRK07667 uridine kinase; Provisional
Probab=60.94 E-value=7.9 Score=36.29 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=18.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|..+.. .....-..+.-++...
T Consensus 27 gsGKStla~~L~~--~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 27 RSGKTTFVANLKE--NMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCCHHHHHHHHHH--HHHhCCCcEEEEEcCc
Confidence 8999999999998 4443322344444443
No 495
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=60.89 E-value=19 Score=38.47 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 173 G~GKStLl~~I~~ 185 (440)
T TIGR01026 173 GVGKSTLLGMIAR 185 (440)
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999887
No 496
>PRK06761 hypothetical protein; Provisional
Probab=60.82 E-value=8.3 Score=38.37 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 13 GsGKTTla~~L~~ 25 (282)
T PRK06761 13 GFGKSTTAKMLND 25 (282)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 497
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=60.60 E-value=7 Score=35.39 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=17.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|.||||+|.++.. +....-..++-.
T Consensus 33 GsGKSTiA~ale~--~L~~~G~~~y~L 57 (197)
T COG0529 33 GSGKSTIANALEE--KLFAKGYHVYLL 57 (197)
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEe
Confidence 8899999999987 454444343333
No 498
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=52 Score=34.71 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=29.8
Q ss_pred CeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHH-hcCC
Q 039822 120 DVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASL-LRSK 180 (711)
Q Consensus 120 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~-l~~~ 180 (711)
-.+.+.-=+.+.-..|+..+.....+ ..++.+|.+...|.-+.=..+|.. |+.+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~~-------h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEED-------HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCCC-------cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 36667777778888888777633221 233455555555554444444444 4444
No 499
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=60.49 E-value=7.1 Score=43.82 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=32.0
Q ss_pred CccHHHHHHHHhcChhh-hccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDV-KNHFEKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+||||+|+.+++ .+ ..+|+.++|+.- ..-+...+++.++.+++
T Consensus 60 G~GKttla~~l~~--~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 60 GTGKSMLAKAMAE--LLPKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred CCcHHHHHHHHHH--HcChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 8999999999997 34 334577778644 44467788888887664
No 500
>PRK06696 uridine kinase; Validated
Probab=60.37 E-value=9.8 Score=36.63 Aligned_cols=13 Identities=38% Similarity=0.348 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+++++
T Consensus 32 gsGKSTlA~~L~~ 44 (223)
T PRK06696 32 ASGKTTFADELAE 44 (223)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
Done!