Query 039822
Match_columns 711
No_of_seqs 255 out of 3463
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 23:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-39 8.4E-44 356.7 19.0 284 1-307 162-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.4E-32 1.9E-36 300.6 16.3 254 1-299 160-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-29 6.1E-34 308.6 23.4 276 1-306 157-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.3E-27 8E-32 265.5 20.3 271 1-303 157-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 4.1E-23 1.4E-27 215.3 18.8 294 326-686 44-345 (347)
6 3rgz_A Protein brassinosteroid 99.9 1.7E-23 5.8E-28 241.0 14.1 350 326-710 294-767 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 3.3E-22 1.1E-26 228.7 18.6 324 326-686 448-839 (876)
8 3o6n_A APL1; leucine-rich repe 99.9 2.2E-22 7.6E-27 213.2 15.9 294 326-688 45-353 (390)
9 4eco_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 226.5 15.9 310 326-686 249-599 (636)
10 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.9E-26 212.9 22.1 296 327-686 33-332 (477)
11 3v47_A TOLL-like receptor 5B a 99.9 6.2E-22 2.1E-26 214.5 17.0 327 326-686 30-407 (455)
12 4eco_A Uncharacterized protein 99.9 4E-22 1.4E-26 224.2 15.9 309 326-686 206-578 (636)
13 3vq2_A TLR4, TOLL-like recepto 99.9 4E-21 1.4E-25 216.1 23.6 120 326-450 32-164 (606)
14 4ecn_A Leucine-rich repeat pro 99.9 9.6E-22 3.3E-26 224.8 18.3 318 325-688 490-873 (876)
15 3t6q_A CD180 antigen; protein- 99.9 2.5E-21 8.6E-26 217.7 20.1 136 326-469 33-180 (606)
16 3rgz_A Protein brassinosteroid 99.9 7.3E-22 2.5E-26 227.4 15.6 251 325-604 268-534 (768)
17 3oja_B Anopheles plasmodium-re 99.9 7.2E-22 2.5E-26 220.9 14.8 294 326-688 51-359 (597)
18 4fmz_A Internalin; leucine ric 99.9 2.2E-21 7.4E-26 202.2 17.1 274 348-686 42-323 (347)
19 1o6v_A Internalin A; bacterial 99.9 5.2E-21 1.8E-25 207.5 20.2 305 326-686 46-365 (466)
20 2z81_A CD282 antigen, TOLL-lik 99.9 1E-20 3.5E-25 210.2 22.7 335 326-686 26-509 (549)
21 2z7x_B TOLL-like receptor 1, v 99.9 7.1E-21 2.4E-25 209.9 19.1 339 326-686 21-480 (520)
22 1o6v_A Internalin A; bacterial 99.8 1.7E-20 5.7E-25 203.5 19.6 293 326-687 68-388 (466)
23 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-20 6.5E-25 217.9 21.3 119 326-449 24-158 (844)
24 2id5_A Lingo-1, leucine rich r 99.8 3.3E-20 1.1E-24 202.1 20.7 271 326-660 56-330 (477)
25 3vq2_A TLR4, TOLL-like recepto 99.8 4.5E-21 1.6E-25 215.7 14.2 111 326-441 56-179 (606)
26 2z63_A TOLL-like receptor 4, v 99.8 6.9E-21 2.4E-25 212.6 14.8 64 616-686 466-530 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.8E-20 1.3E-24 205.8 20.1 340 326-686 52-509 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.8 6.2E-20 2.1E-24 197.3 20.0 300 326-685 42-350 (457)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.1E-20 1.7E-24 204.8 19.7 327 328-686 33-485 (562)
30 3o6n_A APL1; leucine-rich repe 99.8 1.6E-20 5.5E-25 198.8 14.8 275 348-686 43-330 (390)
31 3t6q_A CD180 antigen; protein- 99.8 5E-20 1.7E-24 207.2 18.6 257 387-686 274-559 (606)
32 3bz5_A Internalin-J, INLJ; leu 99.8 4.2E-20 1.4E-24 198.7 16.9 266 347-688 39-321 (457)
33 3v47_A TOLL-like receptor 5B a 99.8 6.1E-20 2.1E-24 198.8 16.0 311 331-686 15-383 (455)
34 4fcg_A Uncharacterized protein 99.8 8.4E-20 2.9E-24 187.7 15.9 231 390-684 80-311 (328)
35 3oja_B Anopheles plasmodium-re 99.8 6.6E-20 2.2E-24 205.0 14.8 275 348-686 49-336 (597)
36 1ziw_A TOLL-like receptor 3; i 99.8 3.5E-19 1.2E-23 203.1 20.2 242 326-595 25-283 (680)
37 1ziw_A TOLL-like receptor 3; i 99.8 6.1E-19 2.1E-23 201.1 21.9 329 327-687 249-622 (680)
38 2z81_A CD282 antigen, TOLL-lik 99.8 6E-20 2.1E-24 203.9 13.3 162 332-507 11-185 (549)
39 3j0a_A TOLL-like receptor 5; m 99.8 1E-18 3.5E-23 203.3 22.4 317 329-685 7-392 (844)
40 4fcg_A Uncharacterized protein 99.8 3.7E-19 1.3E-23 183.0 15.9 235 326-666 81-316 (328)
41 2z63_A TOLL-like receptor 4, v 99.8 1.6E-19 5.4E-24 201.6 13.3 221 412-685 279-505 (570)
42 2ft3_A Biglycan; proteoglycan, 99.8 6.8E-19 2.3E-23 181.8 17.0 291 327-685 34-331 (332)
43 1xku_A Decorin; proteoglycan, 99.8 6.6E-19 2.3E-23 181.8 15.9 292 327-684 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-19 1.7E-23 182.8 15.0 275 326-661 54-331 (332)
45 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.5E-23 196.1 15.4 136 530-686 440-579 (635)
46 1ogq_A PGIP-2, polygalacturona 99.8 8.9E-19 3E-23 179.0 12.0 239 326-634 50-305 (313)
47 1xku_A Decorin; proteoglycan, 99.8 7.4E-18 2.5E-22 173.9 18.4 263 351-686 32-305 (330)
48 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-17 4.1E-22 184.0 13.6 114 527-662 366-480 (520)
49 2z80_A TOLL-like receptor 2, v 99.7 1E-17 3.6E-22 174.5 12.4 263 331-686 36-313 (353)
50 1ogq_A PGIP-2, polygalacturona 99.7 3.2E-18 1.1E-22 174.8 7.3 250 391-689 50-306 (313)
51 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.6E-21 172.2 18.5 225 391-686 64-291 (440)
52 3zyi_A Leucine-rich repeat-con 99.7 1.4E-16 4.9E-21 171.8 18.4 225 391-686 75-302 (452)
53 1jl5_A Outer protein YOPM; leu 99.7 2.8E-16 9.7E-21 168.6 20.0 58 619-687 336-409 (454)
54 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-16 5.8E-21 175.7 18.3 256 327-686 41-296 (622)
55 1jl5_A Outer protein YOPM; leu 99.7 5.9E-17 2E-21 174.0 11.8 221 326-595 11-248 (454)
56 3o53_A Protein LRIM1, AGAP0063 99.7 5E-18 1.7E-22 173.9 2.0 244 389-690 32-278 (317)
57 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.5E-21 166.2 11.6 243 326-595 52-312 (353)
58 2z66_A Variable lymphocyte rec 99.7 2.6E-16 8.8E-21 160.5 12.7 183 463-686 75-260 (306)
59 3zyi_A Leucine-rich repeat-con 99.7 4.1E-16 1.4E-20 168.2 14.3 229 331-595 59-301 (452)
60 2z66_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 161.6 9.8 225 327-630 29-258 (306)
61 3zyj_A Leucine-rich repeat-con 99.7 5.7E-16 2E-20 166.4 14.2 229 331-595 48-290 (440)
62 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-15 4.2E-20 172.4 17.6 118 326-449 52-183 (635)
63 3oja_A Leucine-rich immune mol 99.6 4.8E-17 1.6E-21 176.5 3.7 236 389-682 32-270 (487)
64 1z7x_W Ribonuclease inhibitor; 99.6 6.1E-18 2.1E-22 183.4 -3.6 342 326-686 3-410 (461)
65 1ozn_A Reticulon 4 receptor; N 99.6 1E-14 3.5E-19 146.9 17.9 136 529-686 99-237 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-16 3.8E-21 163.9 3.1 273 334-688 18-300 (317)
67 3ogk_B Coronatine-insensitive 99.6 7.3E-17 2.5E-21 180.8 2.0 135 533-685 376-524 (592)
68 1ozn_A Reticulon 4 receptor; N 99.6 7.6E-16 2.6E-20 155.2 7.9 208 330-595 15-236 (285)
69 1h6u_A Internalin H; cell adhe 99.6 7E-15 2.4E-19 149.6 14.0 200 385-668 35-234 (308)
70 1p9a_G Platelet glycoprotein I 99.6 1.5E-14 5E-19 145.7 16.1 200 386-686 5-207 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.6 3E-14 1E-18 157.7 19.0 233 350-685 40-272 (622)
72 3ogk_B Coronatine-insensitive 99.6 4.2E-17 1.4E-21 182.8 -4.3 302 348-689 162-502 (592)
73 1wwl_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 160.1 2.3 252 385-686 37-308 (312)
74 2xwt_C Thyrotropin receptor; s 99.6 2.8E-14 9.5E-19 139.6 14.9 133 530-687 100-239 (239)
75 2o6q_A Variable lymphocyte rec 99.6 8.9E-14 3.1E-18 138.7 18.5 52 391-446 16-68 (270)
76 1wwl_A Monocyte differentiatio 99.6 9.7E-16 3.3E-20 156.4 4.2 238 348-665 41-310 (312)
77 2p1m_B Transport inhibitor res 99.6 6.4E-16 2.2E-20 173.2 2.5 135 534-689 371-521 (594)
78 3oja_A Leucine-rich immune mol 99.5 6.4E-15 2.2E-19 159.7 8.0 222 406-687 21-250 (487)
79 1z7x_W Ribonuclease inhibitor; 99.5 3.4E-16 1.2E-20 169.6 -2.0 223 350-594 3-266 (461)
80 4ay9_X Follicle-stimulating ho 99.5 8.4E-14 2.9E-18 144.5 15.9 222 391-683 30-255 (350)
81 2xwt_C Thyrotropin receptor; s 99.5 8.1E-14 2.8E-18 136.2 14.3 198 392-662 32-238 (239)
82 1h6u_A Internalin H; cell adhe 99.5 5.2E-14 1.8E-18 143.1 12.2 196 348-602 39-234 (308)
83 2z62_A TOLL-like receptor 4, v 99.5 1.6E-13 5.6E-18 137.3 15.1 129 531-682 96-232 (276)
84 3rfs_A Internalin B, repeat mo 99.5 6.6E-14 2.3E-18 139.7 11.9 208 385-672 35-244 (272)
85 1p9a_G Platelet glycoprotein I 99.5 1.5E-13 5.2E-18 138.2 12.1 62 531-595 144-206 (290)
86 2ast_B S-phase kinase-associat 99.5 4.1E-15 1.4E-19 153.8 0.1 205 391-630 70-282 (336)
87 2o6q_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 131.9 15.9 65 532-600 130-196 (270)
88 2ast_B S-phase kinase-associat 99.5 3.5E-15 1.2E-19 154.3 -1.3 251 391-690 47-308 (336)
89 2ca6_A RAN GTPase-activating p 99.4 7.6E-15 2.6E-19 154.8 0.1 40 385-425 26-70 (386)
90 2z62_A TOLL-like receptor 4, v 99.4 1.5E-13 5.2E-18 137.5 9.6 54 391-446 28-83 (276)
91 4glp_A Monocyte differentiatio 99.4 2.4E-13 8.1E-18 138.6 10.5 136 529-686 163-306 (310)
92 2p1m_B Transport inhibitor res 99.4 2.4E-15 8.2E-20 168.6 -5.3 119 326-448 66-220 (594)
93 3rfs_A Internalin B, repeat mo 99.4 2.2E-13 7.6E-18 135.9 9.1 175 348-595 39-216 (272)
94 4ay9_X Follicle-stimulating ho 99.4 1.8E-12 6.1E-17 134.4 15.3 100 331-450 14-115 (350)
95 2ca6_A RAN GTPase-activating p 99.4 2.2E-14 7.5E-19 151.3 0.6 192 387-595 56-285 (386)
96 1h6t_A Internalin B; cell adhe 99.4 9.9E-13 3.4E-17 132.4 11.1 172 385-595 40-211 (291)
97 1m9s_A Internalin B; cell inva 99.4 1.6E-12 5.4E-17 143.8 11.6 162 373-595 39-208 (605)
98 4glp_A Monocyte differentiatio 99.3 7.1E-13 2.4E-17 135.0 7.4 58 534-595 223-283 (310)
99 3m19_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 122.0 12.7 172 391-629 14-188 (251)
100 3goz_A Leucine-rich repeat-con 99.3 2.9E-13 9.8E-18 141.2 0.6 213 389-630 20-263 (362)
101 3cvr_A Invasion plasmid antige 99.3 1.7E-11 5.9E-16 133.9 13.6 190 391-668 59-248 (571)
102 3goz_A Leucine-rich repeat-con 99.3 3.1E-13 1E-17 141.0 -1.3 240 368-631 13-295 (362)
103 3m19_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 118.3 13.4 153 495-686 36-191 (251)
104 1m9s_A Internalin B; cell inva 99.3 1.2E-11 4.2E-16 136.6 10.6 91 348-447 41-139 (605)
105 1dce_A Protein (RAB geranylger 99.2 7.3E-14 2.5E-18 153.5 -7.2 216 387-680 345-566 (567)
106 4ezg_A Putative uncharacterize 99.2 3.7E-11 1.3E-15 113.3 12.4 150 491-685 41-192 (197)
107 4ezg_A Putative uncharacterize 99.2 1.5E-11 5.3E-16 115.9 9.5 55 387-445 40-94 (197)
108 1h6t_A Internalin B; cell adhe 99.2 2E-11 7E-16 122.7 9.5 168 348-572 44-211 (291)
109 1xeu_A Internalin C; cellular 99.2 6.6E-11 2.3E-15 117.0 9.6 153 386-601 36-188 (263)
110 2o6s_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 109.7 11.4 48 393-444 9-57 (208)
111 1w5s_A Origin recognition comp 99.1 9.5E-10 3.2E-14 116.8 17.8 257 1-279 62-372 (412)
112 2qen_A Walker-type ATPase; unk 99.1 1.8E-09 6.1E-14 111.9 18.5 265 1-299 41-348 (350)
113 1xeu_A Internalin C; cellular 99.1 2.7E-10 9.3E-15 112.5 10.8 127 530-686 58-184 (263)
114 3e6j_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 107.9 12.6 130 534-686 39-171 (229)
115 3cvr_A Invasion plasmid antige 99.1 1.8E-10 6.2E-15 125.8 10.0 176 350-631 59-241 (571)
116 2fna_A Conserved hypothetical 99.1 5.1E-09 1.7E-13 108.7 20.4 263 1-299 40-356 (357)
117 1dce_A Protein (RAB geranylger 99.1 2.6E-12 8.7E-17 141.2 -5.6 44 393-439 443-486 (567)
118 2ell_A Acidic leucine-rich nuc 99.0 8.6E-10 2.9E-14 100.9 11.0 135 531-686 20-159 (168)
119 2v9t_B SLIT homolog 2 protein 99.0 1.4E-09 4.7E-14 104.3 11.4 130 535-686 32-164 (220)
120 2o6s_A Variable lymphocyte rec 99.0 2.8E-09 9.5E-14 101.3 12.9 130 534-685 27-159 (208)
121 2v70_A SLIT-2, SLIT homolog 2 99.0 2.6E-09 8.8E-14 102.4 12.1 148 393-595 13-164 (220)
122 1a9n_A U2A', U2A'; complex (nu 99.0 6E-10 2.1E-14 102.8 7.4 138 530-689 14-155 (176)
123 3e6j_A Variable lymphocyte rec 99.0 2.7E-09 9.1E-14 103.0 11.8 147 393-595 21-170 (229)
124 2v9t_B SLIT homolog 2 protein 99.0 1.5E-09 5.3E-14 103.9 9.9 147 394-595 14-163 (220)
125 3sb4_A Hypothetical leucine ri 98.9 5.8E-10 2E-14 114.4 6.3 129 528-680 195-327 (329)
126 2v70_A SLIT-2, SLIT homolog 2 98.9 4.1E-09 1.4E-13 101.0 11.5 131 534-686 31-165 (220)
127 2xot_A Amphoterin-induced prot 98.9 1.6E-09 5.3E-14 112.7 8.0 156 495-686 40-201 (361)
128 2xot_A Amphoterin-induced prot 98.9 1.3E-09 4.3E-14 113.4 7.1 53 392-446 40-95 (361)
129 2je0_A Acidic leucine-rich nuc 98.9 8.6E-10 2.9E-14 98.6 5.0 131 532-683 14-149 (149)
130 2ell_A Acidic leucine-rich nuc 98.9 1.4E-09 4.9E-14 99.4 5.6 116 326-449 24-157 (168)
131 2qby_B CDC6 homolog 3, cell di 98.9 2.6E-07 8.8E-12 96.9 23.4 258 1-280 55-341 (384)
132 4b8c_D Glucose-repressible alc 98.8 2.3E-10 7.9E-15 129.8 -0.8 97 344-446 218-323 (727)
133 3sb4_A Hypothetical leucine ri 98.8 2.5E-08 8.4E-13 102.2 14.4 283 326-656 25-327 (329)
134 2je0_A Acidic leucine-rich nuc 98.8 5.7E-10 2E-14 99.8 1.6 100 326-447 17-121 (149)
135 1a9n_A U2A', U2A'; complex (nu 98.8 3.5E-09 1.2E-13 97.6 4.3 60 386-447 59-121 (176)
136 2v1u_A Cell division control p 98.7 5.4E-07 1.9E-11 94.5 21.2 258 1-279 54-352 (387)
137 4b8c_D Glucose-repressible alc 98.7 9.4E-09 3.2E-13 116.6 7.7 106 326-437 224-338 (727)
138 2wfh_A SLIT homolog 2 protein 98.7 1.2E-08 4.1E-13 95.4 7.0 109 330-447 14-134 (193)
139 2wfh_A SLIT homolog 2 protein 98.7 8.4E-08 2.9E-12 89.6 10.6 124 538-686 13-138 (193)
140 1fnn_A CDC6P, cell division co 98.7 2.4E-06 8.1E-11 89.6 22.7 260 1-280 54-353 (389)
141 1w8a_A SLIT protein; signaling 98.6 2E-08 6.8E-13 93.9 4.9 28 330-360 12-39 (192)
142 1w8a_A SLIT protein; signaling 98.6 1.3E-07 4.3E-12 88.4 10.1 123 538-685 11-137 (192)
143 2o6r_A Variable lymphocyte rec 98.6 2.9E-07 1E-11 84.7 12.1 124 537-685 9-135 (177)
144 2qby_A CDC6 homolog 1, cell di 98.6 2.3E-06 7.8E-11 89.6 20.1 258 1-278 55-348 (386)
145 2o6r_A Variable lymphocyte rec 98.6 3.6E-07 1.2E-11 84.0 12.2 62 531-595 72-135 (177)
146 1ds9_A Outer arm dynein; leuci 98.6 2.1E-09 7.1E-14 101.3 -3.3 110 386-500 65-180 (198)
147 1njg_A DNA polymerase III subu 98.6 6.2E-07 2.1E-11 87.2 14.0 106 68-177 124-231 (250)
148 1ds9_A Outer arm dynein; leuci 98.5 1.1E-08 3.8E-13 96.2 -1.2 109 386-505 43-151 (198)
149 4fdw_A Leucine rich hypothetic 98.5 4.5E-06 1.5E-10 87.3 18.1 229 392-703 158-395 (401)
150 2r9u_A Variable lymphocyte rec 98.4 2.4E-07 8.1E-12 84.8 5.5 98 329-449 15-115 (174)
151 4fdw_A Leucine rich hypothetic 98.4 1.3E-05 4.6E-10 83.7 19.2 95 340-444 126-231 (401)
152 4fs7_A Uncharacterized protein 98.4 1E-05 3.5E-10 84.8 17.9 291 326-684 71-376 (394)
153 2chg_A Replication factor C sm 98.4 4.2E-06 1.4E-10 80.0 13.7 153 1-174 48-204 (226)
154 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.1E-12 83.7 2.4 67 618-689 83-154 (176)
155 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7E-12 83.8 1.9 93 561-666 61-155 (176)
156 3g39_A Variable lymphocyte rec 98.3 1.1E-06 3.8E-11 80.1 6.6 99 329-449 12-112 (170)
157 2r9u_A Variable lymphocyte rec 98.2 5.5E-06 1.9E-10 75.7 10.2 98 538-659 15-114 (174)
158 3g39_A Variable lymphocyte rec 98.2 5.2E-06 1.8E-10 75.5 9.9 58 537-601 11-70 (170)
159 4fs7_A Uncharacterized protein 98.1 7.8E-05 2.7E-09 78.0 18.4 278 338-682 59-351 (394)
160 1sxj_B Activator 1 37 kDa subu 98.1 1.5E-05 5E-10 81.1 10.9 154 1-175 52-211 (323)
161 2ra8_A Uncharacterized protein 98.0 6.3E-07 2.2E-11 92.0 -0.5 16 460-475 133-148 (362)
162 1hqc_A RUVB; extended AAA-ATPa 98.0 2.6E-05 8.8E-10 79.3 11.6 146 1-177 48-214 (324)
163 2ifg_A High affinity nerve gro 98.0 2.4E-05 8.2E-10 80.5 10.8 94 574-685 21-114 (347)
164 4gt6_A Cell surface protein; l 97.9 0.00051 1.8E-08 71.8 20.2 101 327-433 65-176 (394)
165 2ra8_A Uncharacterized protein 97.9 5.7E-06 2E-10 84.9 3.4 66 492-571 250-317 (362)
166 2ifg_A High affinity nerve gro 97.8 2.6E-05 8.8E-10 80.2 6.4 97 331-448 13-112 (347)
167 1iqp_A RFCS; clamp loader, ext 97.7 9.9E-05 3.4E-09 75.0 9.8 104 69-176 109-214 (327)
168 3un9_A NLR family member X1; l 97.7 4.6E-06 1.6E-10 86.3 -1.0 49 488-549 205-253 (372)
169 3bos_A Putative DNA replicatio 97.5 8.1E-05 2.8E-09 71.9 6.1 143 1-174 62-217 (242)
170 1jr3_A DNA polymerase III subu 97.5 0.00045 1.5E-08 71.6 11.8 102 69-174 118-221 (373)
171 3te6_A Regulatory protein SIR3 97.5 0.0012 4.1E-08 65.6 13.7 136 1-141 55-212 (318)
172 3un9_A NLR family member X1; l 97.4 1.5E-05 5E-10 82.5 -0.7 35 390-425 71-111 (372)
173 2z4s_A Chromosomal replication 97.4 0.00024 8.3E-09 75.0 8.0 152 1-173 140-305 (440)
174 1a5t_A Delta prime, HOLB; zinc 97.4 0.0012 4.1E-08 67.0 12.5 96 69-173 107-204 (334)
175 2chq_A Replication factor C sm 97.4 0.00095 3.3E-08 67.3 11.5 102 69-174 101-204 (319)
176 4h09_A Hypothetical leucine ri 96.9 0.0039 1.3E-07 64.6 11.2 31 327-358 47-77 (379)
177 1sxj_E Activator 1 40 kDa subu 96.8 0.0024 8.2E-08 65.5 8.2 103 69-174 133-237 (354)
178 1sxj_D Activator 1 41 kDa subu 96.8 0.0074 2.5E-07 61.7 11.6 101 69-173 132-234 (353)
179 4gt6_A Cell surface protein; l 96.7 0.0074 2.5E-07 62.8 11.6 284 326-682 87-386 (394)
180 1jbk_A CLPB protein; beta barr 96.7 0.0037 1.3E-07 57.4 8.4 68 68-136 113-194 (195)
181 1l8q_A Chromosomal replication 96.7 0.0025 8.6E-08 64.4 7.8 144 1-168 47-202 (324)
182 1io0_A Tropomodulin; LRR prote 96.7 0.00069 2.4E-08 62.2 2.7 39 387-425 32-75 (185)
183 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.033 1.1E-06 54.0 15.0 150 1-173 49-221 (262)
184 3pvs_A Replication-associated 96.6 0.026 9E-07 59.3 14.8 101 68-173 104-214 (447)
185 4h09_A Hypothetical leucine ri 96.6 0.031 1.1E-06 57.7 15.2 71 346-424 42-122 (379)
186 1sxj_A Activator 1 95 kDa subu 96.5 0.01 3.6E-07 64.0 10.8 160 1-174 87-253 (516)
187 3pfi_A Holliday junction ATP-d 96.4 0.024 8.1E-07 57.5 12.7 102 69-174 105-227 (338)
188 1io0_A Tropomodulin; LRR prote 96.4 0.0004 1.4E-08 63.8 -0.6 15 346-360 32-46 (185)
189 1d2n_A N-ethylmaleimide-sensit 96.4 0.029 9.8E-07 54.9 12.8 136 1-165 74-228 (272)
190 3syl_A Protein CBBX; photosynt 96.4 0.017 5.8E-07 57.7 11.1 73 71-143 131-220 (309)
191 3h4m_A Proteasome-activating n 96.4 0.026 8.8E-07 55.6 12.2 69 99-172 155-229 (285)
192 3u61_B DNA polymerase accessor 96.4 0.017 5.9E-07 58.2 11.0 144 1-169 58-211 (324)
193 3uk6_A RUVB-like 2; hexameric 96.3 0.028 9.6E-07 57.7 12.3 97 71-172 190-301 (368)
194 3rw6_A Nuclear RNA export fact 96.2 0.0032 1.1E-07 60.9 4.5 83 348-447 168-259 (267)
195 2w58_A DNAI, primosome compone 96.1 0.0053 1.8E-07 57.1 5.0 91 1-109 64-158 (202)
196 2gno_A DNA polymerase III, gam 96.0 0.014 4.8E-07 58.0 8.0 122 1-140 28-152 (305)
197 3eie_A Vacuolar protein sortin 95.8 0.064 2.2E-06 53.8 12.1 149 1-174 61-228 (322)
198 3ec2_A DNA replication protein 95.8 0.0087 3E-07 54.4 5.1 92 1-110 48-143 (180)
199 2kjq_A DNAA-related protein; s 95.8 0.0042 1.4E-07 54.5 2.7 29 1-31 46-74 (149)
200 1sxj_C Activator 1 40 kDa subu 95.7 0.058 2E-06 54.7 11.5 98 69-170 109-208 (340)
201 3rw6_A Nuclear RNA export fact 95.6 0.0099 3.4E-07 57.5 5.0 42 388-431 167-211 (267)
202 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.14 4.9E-06 51.2 13.8 102 69-174 104-223 (322)
203 3d8b_A Fidgetin-like protein 1 95.6 0.089 3.1E-06 53.6 12.4 149 1-174 127-295 (357)
204 2qp9_X Vacuolar protein sortin 95.5 0.1 3.5E-06 53.1 12.5 102 69-174 142-261 (355)
205 1g5t_A COB(I)alamin adenosyltr 95.1 0.033 1.1E-06 50.6 6.4 108 1-110 38-163 (196)
206 3b9p_A CG5977-PA, isoform A; A 95.1 0.2 6.9E-06 49.4 12.8 71 100-174 159-233 (297)
207 4b4t_J 26S protease regulatory 94.8 1.1 3.8E-05 45.6 17.2 141 1-167 192-354 (405)
208 3vfd_A Spastin; ATPase, microt 94.6 0.27 9.1E-06 50.8 12.5 71 100-174 252-326 (389)
209 2zan_A Vacuolar protein sortin 94.4 0.4 1.4E-05 50.4 13.6 102 69-174 226-345 (444)
210 3n70_A Transport activator; si 94.4 0.015 5E-07 50.7 2.1 38 72-109 78-115 (145)
211 2p65_A Hypothetical protein PF 94.3 0.044 1.5E-06 49.7 5.1 13 1-13 53-65 (187)
212 4fcw_A Chaperone protein CLPB; 93.9 0.075 2.6E-06 53.0 6.5 99 1-109 57-169 (311)
213 2qgz_A Helicase loader, putati 93.4 0.036 1.2E-06 55.2 2.9 28 1-30 162-190 (308)
214 4b4t_K 26S protease regulatory 92.9 0.52 1.8E-05 48.8 10.7 141 1-167 216-379 (428)
215 4b4t_L 26S protease subunit RP 92.7 1.1 3.6E-05 46.5 12.8 141 1-167 225-387 (437)
216 2cvh_A DNA repair and recombin 92.6 0.42 1.4E-05 44.5 9.0 74 1-80 30-115 (220)
217 3cf0_A Transitional endoplasmi 92.4 0.94 3.2E-05 44.6 11.8 143 1-168 59-222 (301)
218 1jr3_D DNA polymerase III, del 92.3 1.7 5.9E-05 43.7 13.9 102 67-172 73-183 (343)
219 3pxi_A Negative regulator of g 92.2 0.089 3.1E-06 59.7 4.4 119 1-140 531-675 (758)
220 1lv7_A FTSH; alpha/beta domain 92.1 0.92 3.1E-05 43.5 11.0 68 100-172 150-223 (257)
221 2bjv_A PSP operon transcriptio 92.0 0.16 5.6E-06 49.1 5.5 14 1-14 39-52 (265)
222 1qvr_A CLPB protein; coiled co 91.8 0.54 1.9E-05 54.0 10.4 69 69-139 262-344 (854)
223 4b4t_H 26S protease regulatory 91.7 1.6 5.3E-05 45.3 12.5 141 1-167 253-415 (467)
224 3co5_A Putative two-component 91.6 0.12 4.1E-06 44.7 3.6 38 72-109 77-115 (143)
225 2vhj_A Ntpase P4, P4; non- hyd 91.4 0.065 2.2E-06 52.8 1.8 58 1-80 133-192 (331)
226 3hu3_A Transitional endoplasmi 91.2 0.4 1.4E-05 50.9 7.7 148 1-173 248-414 (489)
227 1in4_A RUVB, holliday junction 91.1 2.6 8.7E-05 42.2 13.4 50 120-173 173-222 (334)
228 1ofh_A ATP-dependent HSL prote 91.0 0.75 2.6E-05 45.4 9.4 20 120-139 195-214 (310)
229 2i1q_A DNA repair and recombin 90.8 0.44 1.5E-05 47.6 7.4 78 1-79 108-213 (322)
230 2ce7_A Cell division protein F 90.7 2.1 7.2E-05 45.0 12.7 142 1-167 59-221 (476)
231 3t15_A Ribulose bisphosphate c 90.7 2.2 7.5E-05 41.8 12.2 13 1-13 46-58 (293)
232 1xp8_A RECA protein, recombina 90.6 0.49 1.7E-05 48.0 7.6 72 1-79 84-161 (366)
233 3pxg_A Negative regulator of g 90.4 0.96 3.3E-05 47.8 9.9 67 68-140 265-338 (468)
234 3io5_A Recombination and repai 90.2 0.64 2.2E-05 45.6 7.5 72 1-79 38-120 (333)
235 1ojl_A Transcriptional regulat 90.0 0.31 1.1E-05 48.3 5.3 13 1-13 35-47 (304)
236 2z43_A DNA repair and recombin 89.9 0.59 2E-05 46.7 7.4 46 1-47 117-166 (324)
237 3m6a_A ATP-dependent protease 89.9 0.66 2.3E-05 50.1 8.2 41 100-140 224-266 (543)
238 2r62_A Cell division protease 89.9 0.093 3.2E-06 51.0 1.4 72 69-140 102-196 (268)
239 4b4t_I 26S protease regulatory 89.8 1.8 6.1E-05 44.4 10.8 141 1-167 226-388 (437)
240 1v5w_A DMC1, meiotic recombina 89.5 0.92 3.1E-05 45.7 8.5 45 1-46 132-180 (343)
241 4b4t_M 26S protease regulatory 89.3 1 3.4E-05 46.7 8.6 141 1-167 225-387 (434)
242 2x8a_A Nuclear valosin-contain 89.3 3.2 0.00011 40.1 11.9 119 1-140 54-191 (274)
243 3hr8_A Protein RECA; alpha and 89.2 0.54 1.8E-05 47.4 6.4 72 1-79 71-148 (356)
244 2b8t_A Thymidine kinase; deoxy 89.0 0.13 4.3E-06 48.2 1.5 103 1-111 22-127 (223)
245 3rfe_A Platelet glycoprotein I 88.9 0.5 1.7E-05 39.9 5.1 36 650-686 31-67 (130)
246 3hjn_A DTMP kinase, thymidylat 88.7 0.73 2.5E-05 42.1 6.5 42 1-44 10-51 (197)
247 1r6b_X CLPA protein; AAA+, N-t 88.7 0.39 1.3E-05 54.5 5.6 98 1-109 498-607 (758)
248 1n0w_A DNA repair protein RAD5 88.7 0.9 3.1E-05 42.9 7.5 78 1-79 34-128 (243)
249 2c9o_A RUVB-like 1; hexameric 88.4 1.2 4E-05 46.9 8.8 95 72-171 297-407 (456)
250 1r6b_X CLPA protein; AAA+, N-t 88.0 3.6 0.00012 46.5 13.0 81 59-140 266-362 (758)
251 2w0m_A SSO2452; RECA, SSPF, un 88.0 1.9 6.5E-05 40.3 9.2 105 1-110 33-168 (235)
252 1u94_A RECA protein, recombina 87.8 0.55 1.9E-05 47.4 5.4 72 1-79 73-150 (356)
253 2zr9_A Protein RECA, recombina 87.6 0.9 3.1E-05 45.8 6.9 72 1-79 71-148 (349)
254 1sky_E F1-ATPase, F1-ATP synth 86.8 1 3.5E-05 46.9 6.8 77 1-79 161-254 (473)
255 3rfe_A Platelet glycoprotein I 86.3 0.57 1.9E-05 39.5 3.9 34 392-426 32-66 (130)
256 3cf2_A TER ATPase, transitiona 85.5 2.6 9E-05 47.2 9.8 142 1-167 248-407 (806)
257 1qvr_A CLPB protein; coiled co 85.5 0.69 2.3E-05 53.2 5.3 40 70-109 660-710 (854)
258 1pgv_A TMD-1, tropomodulin TMD 84.8 0.62 2.1E-05 42.3 3.6 38 388-425 38-80 (197)
259 3pxi_A Negative regulator of g 83.9 3.3 0.00011 46.7 10.0 67 68-140 265-338 (758)
260 1iy2_A ATP-dependent metallopr 82.8 2.3 7.9E-05 41.2 7.1 22 119-140 202-223 (278)
261 1fx0_B ATP synthase beta chain 81.9 4.1 0.00014 42.5 8.7 43 1-45 175-219 (498)
262 3bh0_A DNAB-like replicative h 81.7 4.2 0.00014 40.2 8.6 42 1-46 78-119 (315)
263 2ck3_D ATP synthase subunit be 81.0 4.8 0.00017 41.8 8.8 43 1-45 163-207 (482)
264 2dhr_A FTSH; AAA+ protein, hex 79.7 8.5 0.00029 40.6 10.5 63 100-167 169-236 (499)
265 4a1f_A DNAB helicase, replicat 78.0 3.5 0.00012 41.0 6.6 42 1-46 56-97 (338)
266 1pzn_A RAD51, DNA repair and r 77.6 4.3 0.00015 40.8 7.2 78 1-79 141-240 (349)
267 3lda_A DNA repair protein RAD5 77.5 3.4 0.00012 42.3 6.5 46 1-47 188-237 (400)
268 3vr4_D V-type sodium ATPase su 77.4 3.2 0.00011 42.9 6.1 77 1-79 161-257 (465)
269 4a74_A DNA repair and recombin 76.9 6.2 0.00021 36.5 7.8 35 1-35 35-73 (231)
270 1ixz_A ATP-dependent metallopr 75.9 2 6.9E-05 40.9 4.1 22 119-140 178-199 (254)
271 3ice_A Transcription terminati 75.8 1.4 4.7E-05 44.5 2.8 32 1-34 184-217 (422)
272 2orw_A Thymidine kinase; TMTK, 75.5 0.33 1.1E-05 43.9 -1.6 43 66-111 72-114 (184)
273 4hlc_A DTMP kinase, thymidylat 74.7 3.5 0.00012 37.7 5.2 19 1-21 12-30 (205)
274 1pgv_A TMD-1, tropomodulin TMD 74.1 1.2 4.1E-05 40.4 1.8 70 462-545 66-136 (197)
275 1q57_A DNA primase/helicase; d 72.9 7.1 0.00024 41.5 7.8 42 1-46 252-294 (503)
276 1ypw_A Transitional endoplasmi 72.7 4.1 0.00014 46.2 6.1 120 1-140 248-385 (806)
277 4edh_A DTMP kinase, thymidylat 71.5 7.9 0.00027 35.6 6.8 13 1-13 16-28 (213)
278 2px0_A Flagellar biosynthesis 69.6 5.9 0.0002 38.7 5.7 29 1-31 115-144 (296)
279 3oaa_A ATP synthase subunit al 69.1 13 0.00043 38.9 8.2 75 1-79 172-263 (513)
280 1vma_A Cell division protein F 69.0 11 0.00037 36.9 7.5 76 1-79 114-195 (306)
281 3dm5_A SRP54, signal recogniti 68.7 19 0.00064 37.2 9.5 13 1-13 110-122 (443)
282 2qe7_A ATP synthase subunit al 68.3 4.3 0.00015 42.4 4.6 75 1-79 172-263 (502)
283 3l0o_A Transcription terminati 68.2 9.6 0.00033 38.4 6.8 31 1-33 185-217 (427)
284 3gqb_B V-type ATP synthase bet 67.3 7.6 0.00026 40.1 6.1 79 1-79 157-260 (464)
285 4tmk_A Protein (thymidylate ki 67.2 12 0.0004 34.5 6.9 42 1-44 13-55 (213)
286 1qhx_A CPT, protein (chloramph 67.0 1.7 5.8E-05 38.6 1.2 13 1-13 13-25 (178)
287 2r9v_A ATP synthase subunit al 65.1 8.1 0.00028 40.4 5.8 75 1-79 185-276 (515)
288 3bgw_A DNAB-like replicative h 65.0 13 0.00046 38.5 7.7 31 1-33 207-237 (444)
289 3kb2_A SPBC2 prophage-derived 64.9 2.2 7.4E-05 37.6 1.4 13 1-13 11-23 (173)
290 2z0h_A DTMP kinase, thymidylat 63.6 6.7 0.00023 35.3 4.6 13 1-13 10-22 (197)
291 1fx0_A ATP synthase alpha chai 63.1 6.3 0.00021 41.2 4.6 74 1-79 173-264 (507)
292 2r6a_A DNAB helicase, replicat 62.9 30 0.001 36.0 10.0 39 1-43 213-252 (454)
293 2r8r_A Sensor protein; KDPD, P 62.7 6 0.00021 36.6 4.0 29 1-31 16-44 (228)
294 1nks_A Adenylate kinase; therm 61.8 4.7 0.00016 36.1 3.2 13 1-13 11-23 (194)
295 2c61_A A-type ATP synthase non 61.8 6.5 0.00022 40.8 4.4 79 1-79 162-258 (469)
296 1ly1_A Polynucleotide kinase; 61.6 2.7 9.2E-05 37.3 1.4 13 1-13 12-24 (181)
297 1zp6_A Hypothetical protein AT 61.6 3.1 0.0001 37.4 1.8 13 1-13 19-31 (191)
298 2ck3_A ATP synthase subunit al 61.5 13 0.00046 38.8 6.7 77 1-79 172-271 (510)
299 3v9p_A DTMP kinase, thymidylat 61.4 6.3 0.00022 36.7 3.9 17 1-19 35-51 (227)
300 3jvv_A Twitching mobility prot 61.2 1.8 6.1E-05 43.7 0.1 49 60-113 186-234 (356)
301 2ffh_A Protein (FFH); SRP54, s 61.0 17 0.00059 37.3 7.5 27 1-29 108-134 (425)
302 2j9r_A Thymidine kinase; TK1, 61.0 4.7 0.00016 37.0 2.9 100 1-111 38-139 (214)
303 2q6t_A DNAB replication FORK h 60.8 33 0.0011 35.6 9.8 42 1-46 210-252 (444)
304 3mfy_A V-type ATP synthase alp 60.8 10 0.00035 40.1 5.6 38 1-42 237-275 (588)
305 3lv8_A DTMP kinase, thymidylat 60.8 16 0.00054 34.1 6.6 27 1-29 37-64 (236)
306 1nn5_A Similar to deoxythymidy 60.2 7.8 0.00027 35.4 4.4 25 1-27 19-43 (215)
307 3cmu_A Protein RECA, recombina 60.1 9.5 0.00032 47.3 6.0 72 1-79 1437-1514(2050)
308 1kag_A SKI, shikimate kinase I 59.8 3.4 0.00011 36.4 1.7 13 1-13 14-26 (173)
309 3trf_A Shikimate kinase, SK; a 59.8 3 0.0001 37.2 1.4 13 1-13 15-27 (185)
310 3lw7_A Adenylate kinase relate 59.3 3.4 0.00012 36.3 1.7 11 1-11 11-21 (179)
311 1ye8_A Protein THEP1, hypothet 59.2 3.5 0.00012 36.8 1.7 14 1-14 10-23 (178)
312 3t61_A Gluconokinase; PSI-biol 59.1 3.2 0.00011 37.8 1.4 13 1-13 28-40 (202)
313 3vaa_A Shikimate kinase, SK; s 59.0 3.2 0.00011 37.7 1.4 13 1-13 35-47 (199)
314 4dzz_A Plasmid partitioning pr 58.8 6.9 0.00023 35.5 3.7 33 1-35 12-44 (206)
315 3cwq_A Para family chromosome 58.6 7.8 0.00027 35.5 4.1 32 1-35 11-42 (209)
316 2jaq_A Deoxyguanosine kinase; 58.5 3.3 0.00011 37.7 1.4 13 1-13 10-22 (205)
317 3e70_C DPA, signal recognition 58.5 18 0.00061 35.8 6.9 13 1-13 139-151 (328)
318 1kht_A Adenylate kinase; phosp 58.4 3.3 0.00011 37.1 1.4 13 1-13 13-25 (192)
319 2yvu_A Probable adenylyl-sulfa 58.1 5.7 0.0002 35.5 3.0 13 1-13 23-35 (186)
320 2plr_A DTMP kinase, probable t 58.1 7.5 0.00026 35.4 3.9 13 1-13 14-26 (213)
321 1cr0_A DNA primase/helicase; R 57.7 12 0.00039 36.5 5.4 42 1-46 45-87 (296)
322 3cmu_A Protein RECA, recombina 57.6 11 0.00038 46.7 6.1 73 1-80 393-471 (2050)
323 1via_A Shikimate kinase; struc 57.5 3.5 0.00012 36.5 1.4 13 1-13 14-26 (175)
324 2dr3_A UPF0273 protein PH0284; 57.2 6.4 0.00022 36.9 3.3 29 1-31 33-61 (247)
325 2pbr_A DTMP kinase, thymidylat 57.2 11 0.00038 33.6 4.8 13 1-13 10-22 (195)
326 3kl4_A SRP54, signal recogniti 57.0 24 0.00082 36.3 7.7 28 1-30 107-134 (433)
327 1xjc_A MOBB protein homolog; s 56.7 6.6 0.00023 34.5 3.0 18 1-20 14-31 (169)
328 2rhm_A Putative kinase; P-loop 56.5 3.7 0.00013 36.9 1.4 13 1-13 15-27 (193)
329 1j8m_F SRP54, signal recogniti 56.1 23 0.00079 34.4 7.2 77 1-79 108-189 (297)
330 3cmw_A Protein RECA, recombina 55.9 19 0.00065 44.0 7.6 74 1-81 742-821 (1706)
331 1zuh_A Shikimate kinase; alpha 55.8 3.9 0.00013 35.8 1.4 13 1-13 17-29 (168)
332 2fz4_A DNA repair protein RAD2 55.7 15 0.0005 34.4 5.5 13 1-13 118-130 (237)
333 1kgd_A CASK, peripheral plasma 55.6 4.4 0.00015 36.1 1.7 13 1-13 15-27 (180)
334 3a00_A Guanylate kinase, GMP k 55.6 5 0.00017 35.9 2.1 13 1-13 11-23 (186)
335 4eun_A Thermoresistant glucoki 54.5 4.6 0.00016 36.7 1.7 24 1-31 39-62 (200)
336 3uie_A Adenylyl-sulfate kinase 54.3 4.7 0.00016 36.7 1.7 13 1-13 35-47 (200)
337 1ls1_A Signal recognition part 54.3 17 0.00058 35.3 5.9 28 1-30 108-135 (295)
338 2ze6_A Isopentenyl transferase 54.3 4.2 0.00014 38.7 1.4 13 1-13 11-23 (253)
339 2bdt_A BH3686; alpha-beta prot 54.2 4.7 0.00016 36.2 1.7 13 1-13 12-24 (189)
340 1odf_A YGR205W, hypothetical 3 54.2 27 0.00093 33.7 7.3 41 1-43 41-84 (290)
341 4gp7_A Metallophosphoesterase; 54.1 4.7 0.00016 35.6 1.6 19 61-79 92-110 (171)
342 1htw_A HI0065; nucleotide-bind 54.0 4.9 0.00017 35.0 1.7 13 1-13 43-55 (158)
343 1e6c_A Shikimate kinase; phosp 54.0 4.4 0.00015 35.6 1.4 13 1-13 12-24 (173)
344 1knq_A Gluconate kinase; ALFA/ 54.0 4.8 0.00016 35.5 1.7 13 1-13 18-30 (175)
345 3tr0_A Guanylate kinase, GMP k 53.8 4.8 0.00016 36.6 1.7 13 1-13 17-29 (205)
346 3cm0_A Adenylate kinase; ATP-b 53.8 4.4 0.00015 36.2 1.4 13 1-13 14-26 (186)
347 1tev_A UMP-CMP kinase; ploop, 53.6 4.4 0.00015 36.4 1.4 13 1-13 13-25 (196)
348 2pt5_A Shikimate kinase, SK; a 53.5 4.5 0.00015 35.3 1.4 13 1-13 10-22 (168)
349 3iij_A Coilin-interacting nucl 53.2 4.5 0.00016 35.9 1.4 13 1-13 21-33 (180)
350 2iyv_A Shikimate kinase, SK; t 52.9 4.6 0.00016 36.0 1.4 13 1-13 12-24 (184)
351 2bwj_A Adenylate kinase 5; pho 51.7 4.9 0.00017 36.2 1.4 13 1-13 22-34 (199)
352 2wwf_A Thymidilate kinase, put 51.6 8.3 0.00028 35.1 3.0 13 1-13 20-32 (212)
353 3asz_A Uridine kinase; cytidin 51.5 5.4 0.00019 36.5 1.7 13 1-13 16-28 (211)
354 2if2_A Dephospho-COA kinase; a 51.4 5 0.00017 36.5 1.4 13 1-13 11-23 (204)
355 2c95_A Adenylate kinase 1; tra 51.4 5 0.00017 36.1 1.4 13 1-13 19-31 (196)
356 3c8u_A Fructokinase; YP_612366 51.2 4.7 0.00016 36.9 1.2 13 1-13 32-44 (208)
357 1y63_A LMAJ004144AAA protein; 50.8 5.2 0.00018 35.7 1.4 13 1-13 20-32 (184)
358 1ex7_A Guanylate kinase; subst 50.4 3.9 0.00013 36.7 0.5 13 1-13 11-23 (186)
359 3ld9_A DTMP kinase, thymidylat 50.3 12 0.0004 34.7 3.7 13 1-13 31-43 (223)
360 2cdn_A Adenylate kinase; phosp 50.1 5.4 0.00019 36.2 1.4 13 1-13 30-42 (201)
361 3zq6_A Putative arsenical pump 49.9 14 0.00047 36.6 4.5 34 1-36 24-57 (324)
362 2vli_A Antibiotic resistance p 49.7 4 0.00014 36.3 0.4 13 1-13 15-27 (183)
363 2qor_A Guanylate kinase; phosp 49.7 5.5 0.00019 36.3 1.4 13 1-13 22-34 (204)
364 1gtv_A TMK, thymidylate kinase 49.4 4.2 0.00014 37.3 0.6 13 1-13 10-22 (214)
365 1qf9_A UMP/CMP kinase, protein 49.4 5.6 0.00019 35.6 1.4 13 1-13 16-28 (194)
366 3kjh_A CO dehydrogenase/acetyl 49.2 11 0.00036 35.5 3.4 34 1-36 10-43 (254)
367 1jjv_A Dephospho-COA kinase; P 49.2 6.4 0.00022 35.8 1.8 13 1-13 12-24 (206)
368 2j41_A Guanylate kinase; GMP, 49.1 6.3 0.00021 35.8 1.7 13 1-13 16-28 (207)
369 2bbw_A Adenylate kinase 4, AK4 49.0 6.2 0.00021 37.2 1.7 13 1-13 37-49 (246)
370 1cp2_A CP2, nitrogenase iron p 48.9 13 0.00043 35.5 3.9 30 1-32 11-40 (269)
371 1zd8_A GTP:AMP phosphotransfer 48.5 5.9 0.0002 36.8 1.4 13 1-13 17-29 (227)
372 3zvl_A Bifunctional polynucleo 48.4 44 0.0015 34.2 8.2 13 1-13 268-280 (416)
373 4eaq_A DTMP kinase, thymidylat 48.3 11 0.00036 35.2 3.1 13 1-13 36-48 (229)
374 3tau_A Guanylate kinase, GMP k 48.2 6.6 0.00023 35.9 1.7 13 1-13 18-30 (208)
375 3fb4_A Adenylate kinase; psych 48.2 6 0.00021 36.3 1.4 13 1-13 10-22 (216)
376 2v54_A DTMP kinase, thymidylat 48.2 6 0.00021 35.8 1.4 13 1-13 14-26 (204)
377 1aky_A Adenylate kinase; ATP:A 48.1 6 0.00021 36.5 1.4 13 1-13 14-26 (220)
378 1ukz_A Uridylate kinase; trans 48.1 6.1 0.00021 35.9 1.4 13 1-13 25-37 (203)
379 2i3b_A HCR-ntpase, human cance 48.0 6.8 0.00023 35.3 1.7 14 1-14 11-24 (189)
380 3b5x_A Lipid A export ATP-bind 47.9 43 0.0015 36.2 8.4 13 1-13 379-391 (582)
381 1nlf_A Regulatory protein REPA 47.8 12 0.00039 36.1 3.5 31 1-33 40-80 (279)
382 2zts_A Putative uncharacterize 47.7 9.2 0.00032 35.8 2.7 31 1-32 40-70 (251)
383 2eyu_A Twitching motility prot 47.7 9.5 0.00033 36.4 2.8 26 1-28 35-60 (261)
384 2qt1_A Nicotinamide riboside k 47.6 7.1 0.00024 35.6 1.8 13 1-13 31-43 (207)
385 1znw_A Guanylate kinase, GMP k 47.4 6.9 0.00024 35.7 1.7 13 1-13 30-42 (207)
386 1cke_A CK, MSSA, protein (cyti 47.3 6.9 0.00024 36.2 1.7 13 1-13 15-27 (227)
387 2pez_A Bifunctional 3'-phospho 47.1 6.5 0.00022 34.8 1.4 13 1-13 15-27 (179)
388 2pcj_A ABC transporter, lipopr 47.1 8.9 0.00031 35.6 2.4 24 1-27 40-63 (224)
389 3a4m_A L-seryl-tRNA(SEC) kinas 47.0 6.4 0.00022 37.6 1.4 13 1-13 14-26 (260)
390 3dl0_A Adenylate kinase; phosp 46.8 6.5 0.00022 36.1 1.4 13 1-13 10-22 (216)
391 1g3q_A MIND ATPase, cell divis 46.8 11 0.00038 35.0 3.1 29 1-31 13-41 (237)
392 3tif_A Uncharacterized ABC tra 46.8 9.1 0.00031 35.8 2.4 24 1-27 41-64 (235)
393 2jeo_A Uridine-cytidine kinase 46.7 7.1 0.00024 36.8 1.7 13 1-13 35-47 (245)
394 3cmw_A Protein RECA, recombina 46.5 17 0.00059 44.3 5.2 72 1-79 1441-1518(1706)
395 3iqw_A Tail-anchored protein t 46.4 14 0.00047 36.7 3.8 32 1-34 26-57 (334)
396 4g1u_C Hemin import ATP-bindin 46.4 11 0.00038 36.0 3.0 24 1-27 47-70 (266)
397 1lvg_A Guanylate kinase, GMP k 46.3 7.4 0.00025 35.3 1.7 13 1-13 14-26 (198)
398 1zak_A Adenylate kinase; ATP:A 45.9 6.8 0.00023 36.2 1.4 13 1-13 15-27 (222)
399 1rz3_A Hypothetical protein rb 45.6 7.7 0.00026 35.2 1.7 13 1-13 32-44 (201)
400 1uf9_A TT1252 protein; P-loop, 45.5 7.1 0.00024 35.3 1.4 13 1-13 18-30 (203)
401 1e4v_A Adenylate kinase; trans 45.3 7.1 0.00024 35.8 1.4 13 1-13 10-22 (214)
402 2yhs_A FTSY, cell division pro 45.3 50 0.0017 34.6 7.9 31 1-34 303-333 (503)
403 3gfo_A Cobalt import ATP-bindi 45.0 9.9 0.00034 36.6 2.4 13 1-13 44-56 (275)
404 1b0u_A Histidine permease; ABC 45.0 9.9 0.00034 36.3 2.4 13 1-13 42-54 (262)
405 1z6g_A Guanylate kinase; struc 44.7 8.1 0.00028 35.7 1.7 13 1-13 33-45 (218)
406 2onk_A Molybdate/tungstate ABC 44.6 10 0.00035 35.6 2.4 13 1-13 34-46 (240)
407 3tmk_A Thymidylate kinase; pho 44.5 19 0.00066 33.0 4.2 13 1-13 15-27 (216)
408 1ak2_A Adenylate kinase isoenz 44.5 7.4 0.00025 36.3 1.4 13 1-13 26-38 (233)
409 2ehv_A Hypothetical protein PH 44.4 8 0.00028 36.3 1.7 29 1-30 40-68 (251)
410 1m7g_A Adenylylsulfate kinase; 44.4 7.5 0.00026 35.6 1.4 13 1-13 35-47 (211)
411 1sgw_A Putative ABC transporte 44.3 11 0.00036 34.8 2.4 13 1-13 45-57 (214)
412 1yrb_A ATP(GTP)binding protein 44.2 8.1 0.00028 36.7 1.7 13 1-13 24-36 (262)
413 2afh_E Nitrogenase iron protei 44.1 16 0.00053 35.4 3.8 30 1-32 12-41 (289)
414 2grj_A Dephospho-COA kinase; T 44.1 7.8 0.00027 35.0 1.4 13 1-13 22-34 (192)
415 1np6_A Molybdopterin-guanine d 44.0 16 0.00054 32.3 3.4 13 1-13 16-28 (174)
416 3aez_A Pantothenate kinase; tr 44.0 8.2 0.00028 38.0 1.7 29 1-31 100-130 (312)
417 2wji_A Ferrous iron transport 44.0 8.9 0.0003 33.3 1.8 14 1-14 13-26 (165)
418 2xb4_A Adenylate kinase; ATP-b 43.9 7.7 0.00026 35.9 1.4 13 1-13 10-22 (223)
419 2xj4_A MIPZ; replication, cell 43.7 17 0.00057 35.1 3.9 34 1-36 15-49 (286)
420 3be4_A Adenylate kinase; malar 43.6 7.8 0.00027 35.7 1.4 13 1-13 15-27 (217)
421 2qi9_C Vitamin B12 import ATP- 43.6 11 0.00038 35.6 2.5 23 1-27 36-58 (249)
422 2zej_A Dardarin, leucine-rich 43.4 9.1 0.00031 33.9 1.8 14 1-14 12-25 (184)
423 3fkq_A NTRC-like two-domain pr 43.3 17 0.00059 36.7 4.1 31 1-33 154-184 (373)
424 2ocp_A DGK, deoxyguanosine kin 43.2 7.9 0.00027 36.3 1.4 13 1-13 12-24 (241)
425 2olj_A Amino acid ABC transpor 43.1 11 0.00038 35.9 2.4 13 1-13 60-72 (263)
426 1gvn_B Zeta; postsegregational 43.1 6.7 0.00023 38.1 0.9 13 1-13 43-55 (287)
427 1mv5_A LMRA, multidrug resista 43.1 12 0.0004 35.2 2.6 53 62-114 149-202 (243)
428 2ff7_A Alpha-hemolysin translo 42.9 11 0.00038 35.5 2.4 13 1-13 45-57 (247)
429 1ji0_A ABC transporter; ATP bi 42.9 11 0.00038 35.3 2.4 13 1-13 42-54 (240)
430 3k9g_A PF-32 protein; ssgcid, 42.7 15 0.00051 35.0 3.3 32 1-35 38-69 (267)
431 1oix_A RAS-related protein RAB 42.6 9.2 0.00031 34.2 1.7 14 1-14 39-52 (191)
432 2ph1_A Nucleotide-binding prot 42.6 14 0.00048 35.1 3.1 31 1-33 29-59 (262)
433 1vpl_A ABC transporter, ATP-bi 42.5 11 0.00039 35.7 2.4 13 1-13 51-63 (256)
434 1p6x_A Thymidine kinase; P-loo 42.2 9.4 0.00032 37.8 1.8 13 1-13 17-29 (334)
435 1g6h_A High-affinity branched- 42.2 12 0.0004 35.7 2.4 13 1-13 43-55 (257)
436 1s96_A Guanylate kinase, GMP k 42.1 9.4 0.00032 35.3 1.7 13 1-13 26-38 (219)
437 3ney_A 55 kDa erythrocyte memb 41.8 9.7 0.00033 34.4 1.7 13 1-13 29-41 (197)
438 1hyq_A MIND, cell division inh 41.7 15 0.00051 34.8 3.1 29 1-31 13-41 (263)
439 3ake_A Cytidylate kinase; CMP 41.7 8.7 0.0003 34.8 1.4 13 1-13 12-24 (208)
440 3ea0_A ATPase, para family; al 41.6 15 0.00053 34.2 3.2 30 1-32 15-45 (245)
441 1e2k_A Thymidine kinase; trans 41.5 9.9 0.00034 37.6 1.8 13 1-13 14-26 (331)
442 2yz2_A Putative ABC transporte 41.4 12 0.00041 35.7 2.4 13 1-13 43-55 (266)
443 2ixe_A Antigen peptide transpo 41.4 12 0.00041 35.9 2.4 13 1-13 55-67 (271)
444 1vht_A Dephospho-COA kinase; s 41.3 8.9 0.00031 35.2 1.4 13 1-13 14-26 (218)
445 3end_A Light-independent proto 41.2 18 0.00062 35.2 3.8 31 1-33 51-81 (307)
446 2pze_A Cystic fibrosis transme 41.1 13 0.00043 34.7 2.4 54 61-114 139-194 (229)
447 3vr4_A V-type sodium ATPase ca 41.1 39 0.0013 35.9 6.2 38 1-42 242-280 (600)
448 3ug7_A Arsenical pump-driving 41.1 18 0.00061 36.2 3.7 29 1-31 36-64 (349)
449 3e1s_A Exodeoxyribonuclease V, 41.1 23 0.0008 38.1 4.9 33 72-107 281-313 (574)
450 2xxa_A Signal recognition part 40.9 65 0.0022 33.2 8.0 28 1-30 110-138 (433)
451 2f9l_A RAB11B, member RAS onco 40.9 10 0.00034 34.2 1.7 14 1-14 15-28 (199)
452 1c9k_A COBU, adenosylcobinamid 40.8 21 0.0007 31.7 3.6 28 1-34 9-36 (180)
453 3q9l_A Septum site-determining 40.8 20 0.0007 33.7 4.0 34 1-36 13-47 (260)
454 3tlx_A Adenylate kinase 2; str 40.5 9.3 0.00032 35.9 1.4 13 1-13 39-51 (243)
455 4e22_A Cytidylate kinase; P-lo 40.4 10 0.00035 35.9 1.7 13 1-13 37-49 (252)
456 2vp4_A Deoxynucleoside kinase; 40.3 8.2 0.00028 35.9 1.0 13 1-13 30-42 (230)
457 1uj2_A Uridine-cytidine kinase 40.3 9.4 0.00032 36.1 1.4 13 1-13 32-44 (252)
458 1p5z_B DCK, deoxycytidine kina 40.0 7 0.00024 37.3 0.5 13 1-13 34-46 (263)
459 3io3_A DEHA2D07832P; chaperone 40.0 20 0.00069 35.8 3.8 31 1-33 28-60 (348)
460 2hf9_A Probable hydrogenase ni 39.9 9.6 0.00033 35.1 1.4 13 1-13 48-60 (226)
461 2dyk_A GTP-binding protein; GT 39.8 11 0.00037 32.2 1.7 14 1-14 11-24 (161)
462 2oze_A ORF delta'; para, walke 39.7 20 0.00069 34.7 3.8 31 1-33 47-77 (298)
463 2ihy_A ABC transporter, ATP-bi 39.6 13 0.00046 35.7 2.4 24 1-27 57-80 (279)
464 1wcv_1 SOJ, segregation protei 39.5 14 0.00048 34.9 2.6 30 1-32 17-46 (257)
465 3b9q_A Chloroplast SRP recepto 39.2 15 0.00052 35.8 2.8 31 1-34 110-140 (302)
466 2cbz_A Multidrug resistance-as 39.1 11 0.00038 35.3 1.7 53 62-114 137-193 (237)
467 1um8_A ATP-dependent CLP prote 39.1 9.6 0.00033 38.6 1.4 13 1-13 82-94 (376)
468 2p5t_B PEZT; postsegregational 39.1 7.5 0.00026 36.9 0.5 13 1-13 42-54 (253)
469 2wjg_A FEOB, ferrous iron tran 39.0 12 0.0004 33.2 1.8 14 1-14 17-30 (188)
470 1zu4_A FTSY; GTPase, signal re 39.0 17 0.00059 35.8 3.1 28 1-30 115-142 (320)
471 2ce2_X GTPase HRAS; signaling 38.8 12 0.00039 32.1 1.7 14 1-14 13-26 (166)
472 2f1r_A Molybdopterin-guanine d 38.6 7.3 0.00025 34.4 0.3 13 1-13 12-24 (171)
473 2j37_W Signal recognition part 38.5 88 0.003 32.8 8.6 13 1-13 111-123 (504)
474 3b85_A Phosphate starvation-in 38.4 8.8 0.0003 35.1 0.9 42 67-112 119-160 (208)
475 1rj9_A FTSY, signal recognitio 38.0 17 0.00058 35.5 2.9 25 1-28 112-136 (304)
476 3hws_A ATP-dependent CLP prote 37.7 10 0.00036 38.1 1.4 13 1-13 61-73 (363)
477 2d2e_A SUFC protein; ABC-ATPas 37.7 12 0.00041 35.4 1.7 13 1-13 39-51 (250)
478 3tqc_A Pantothenate kinase; bi 37.5 12 0.00041 36.9 1.7 13 1-13 102-114 (321)
479 3a8t_A Adenylate isopentenyltr 37.5 11 0.00038 37.3 1.4 13 1-13 50-62 (339)
480 1ltq_A Polynucleotide kinase; 37.3 11 0.00037 36.7 1.4 13 1-13 12-24 (301)
481 2woo_A ATPase GET3; tail-ancho 37.3 23 0.00079 35.0 3.8 30 1-32 29-58 (329)
482 2nzj_A GTP-binding protein REM 37.3 13 0.00044 32.3 1.8 14 1-14 14-27 (175)
483 2lkc_A Translation initiation 37.3 14 0.00048 32.2 2.0 14 1-14 18-31 (178)
484 1of1_A Thymidine kinase; trans 37.2 13 0.00043 37.5 1.8 13 1-13 59-71 (376)
485 2zu0_C Probable ATP-dependent 36.9 12 0.00043 35.7 1.7 13 1-13 56-68 (267)
486 1sq5_A Pantothenate kinase; P- 36.6 12 0.00043 36.6 1.7 13 1-13 90-102 (308)
487 2wsm_A Hydrogenase expression/ 36.5 12 0.0004 34.4 1.4 13 1-13 40-52 (221)
488 3lnc_A Guanylate kinase, GMP k 36.5 8.5 0.00029 35.8 0.4 13 1-13 37-50 (231)
489 3q72_A GTP-binding protein RAD 36.4 13 0.00046 31.8 1.7 14 1-14 12-25 (166)
490 3pg5_A Uncharacterized protein 36.1 22 0.00075 35.7 3.5 34 1-36 12-45 (361)
491 3nwj_A ATSK2; P loop, shikimat 36.1 11 0.00039 35.5 1.3 13 1-13 58-70 (250)
492 1z2a_A RAS-related protein RAB 36.0 14 0.00046 31.8 1.7 14 1-14 15-28 (168)
493 2erx_A GTP-binding protein DI- 35.9 14 0.00048 31.8 1.8 14 1-14 13-26 (172)
494 2woj_A ATPase GET3; tail-ancho 35.7 32 0.0011 34.4 4.6 34 1-36 28-63 (354)
495 2ghi_A Transport protein; mult 35.6 14 0.00046 35.3 1.7 13 1-13 56-68 (260)
496 3con_A GTPase NRAS; structural 35.6 14 0.00047 32.8 1.7 14 1-14 31-44 (190)
497 3crm_A TRNA delta(2)-isopenten 35.3 13 0.00043 36.7 1.4 13 1-13 15-27 (323)
498 2f6r_A COA synthase, bifunctio 35.2 14 0.00047 35.7 1.7 13 1-13 85-97 (281)
499 3kta_A Chromosome segregation 34.9 14 0.00049 32.5 1.7 13 1-13 36-48 (182)
500 1u8z_A RAS-related protein RAL 34.8 15 0.0005 31.5 1.7 14 1-14 14-27 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.5e-39 Score=356.66 Aligned_cols=284 Identities=18% Similarity=0.279 Sum_probs=224.9
Q ss_pred CccHHHHHHHHhc--ChhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCC-------ChhhHHHHHHHHHHHcCC
Q 039822 1 GIGKTTLAQLAYN--NDDVKNHFEKRIWVCVSDPF--DEFRIARSIIEALTGSAP-------DVAEFQSLMQHIQEFVEG 69 (711)
Q Consensus 1 GiGKTtla~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~~~~~l~~ 69 (711)
|+||||||+++|+ +.+++.+|++++||+++... +...+++.|+.++..... +..+.+.....+++.+++
T Consensus 162 GvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~ 241 (549)
T 2a5y_B 162 GSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALID 241 (549)
T ss_dssp TSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcC
Confidence 9999999999997 67899999999999999875 799999999999975421 122345678889999999
Q ss_pred c-eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhC-CcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 70 E-KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMG-STDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 70 ~-r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
+ ||||||||||+.++..|. . .+||+||||||++.++..++ ...+|+|++|+.+|||+||.+.++....
T Consensus 242 ~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-- 311 (549)
T 2a5y_B 242 RPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-- 311 (549)
T ss_dssp STTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---
T ss_pred CCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--
Confidence 6 999999999985432222 1 16999999999999998876 3468999999999999999999876532
Q ss_pred hhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhhhhcccchhhHHhhhhcCChhhhhHhh---
Q 039822 148 ERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELEEVEKGLLAPLMLSYYELPSKVKQCFA--- 224 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~--- 224 (711)
++...+++.+|+++|+|+||||+++|+.++.+. . .|...+....+.. ....+..++.+||+.|+.+.|.||.
T Consensus 312 -~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls 386 (549)
T 2a5y_B 312 -GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-F-EKMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLS 386 (549)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-H-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSC
T ss_pred -chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-H-HHHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccc
Confidence 467788999999999999999999999997762 2 3333333322211 2456889999999999999999999
Q ss_pred --------hhcCCCCCcccCHHHHHHHHHHc--CCcccCC-CchHHHHHHHHHHHHHhcccccccccCCCccEEEEEech
Q 039822 225 --------YCAVFPKDHEILKYDLIELWMAQ--GYFSEKG-YKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHD 293 (711)
Q Consensus 225 --------~~~~f~~~~~i~~~~l~~~w~~~--g~~~~~~-~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~ 293 (711)
|||+||+++.++ +..|+++ ||+.+.. ....++.++ ++++|+++||++....+ ...+|+|||
T Consensus 387 ~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHd 458 (549)
T 2a5y_B 387 DEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDH 458 (549)
T ss_dssp HHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCH
T ss_pred hhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeCh
Confidence 999999999988 7899999 9998766 455667777 99999999999976543 233689999
Q ss_pred HHHHHHHHhhcccc
Q 039822 294 LVHDFARYISSNEC 307 (711)
Q Consensus 294 li~~~~~~~~~~~~ 307 (711)
+++++++.++.+++
T Consensus 459 lv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 459 IIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=5.4e-32 Score=300.56 Aligned_cols=254 Identities=20% Similarity=0.224 Sum_probs=198.6
Q ss_pred CccHHHHHHHHhcChhhhccCCc-eEEEEeCCCCCHHHHHHHHHHHhcCC------CCC-----hhhHHHHHHHHHHHc-
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEK-RIWVCVSDPFDEFRIARSIIEALTGS------APD-----VAEFQSLMQHIQEFV- 67 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~-----~~~~~~~~~~~~~~l- 67 (711)
|+||||||++++++.+++.+|+. ++|+++++.++...++..|+..+... ..+ ..+.+.....+++.+
T Consensus 160 GIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~ 239 (1221)
T 1vt4_I 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239 (1221)
T ss_dssp TSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHH
Confidence 89999999999987789999986 99999999999888888888764311 100 123445566677655
Q ss_pred --CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEECC------CCChhhHHHHHHHH
Q 039822 68 --EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISVN------VLSEMECWSVFESL 139 (711)
Q Consensus 68 --~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~ 139 (711)
.++|+||||||||+. +.|+.+ + +||+||||||++.++..+.....+.|+ +|+.+||++||.+.
T Consensus 240 ~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 240 SKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp HSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred hhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 789999999999883 345443 2 599999999999988655444456666 99999999999988
Q ss_pred hcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC-CHHHHHHHHHhhhhhhhhhcccchhhHHhhhhcCChh
Q 039822 140 AFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKN-TEKEWKNILESEIWELEEVEKGLLAPLMLSYYELPSK 218 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~-~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 218 (711)
. +... .+++.+ .|+|+||||.++|+.|+.+. +.+.|+.. ....+..+|.+||+.|+++
T Consensus 311 ~-g~~~-------eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~e 369 (1221)
T 1vt4_I 311 L-DCRP-------QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPA 369 (1221)
T ss_dssp H-CCCT-------TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCTT
T ss_pred c-CCCH-------HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCHH
Confidence 4 2211 122233 39999999999999998874 57788642 2356889999999999999
Q ss_pred h-hhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHH
Q 039822 219 V-KQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHD 297 (711)
Q Consensus 219 ~-~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~ 297 (711)
. |.||++||+||+++.|+...+...|+++| ++.++.++++|+++||++.. +....|+||+++++
T Consensus 370 elK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLE 434 (1221)
T ss_dssp HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHH
Confidence 9 99999999999999999999999998877 13577899999999999863 11125899999988
Q ss_pred HH
Q 039822 298 FA 299 (711)
Q Consensus 298 ~~ 299 (711)
++
T Consensus 435 Lr 436 (1221)
T 1vt4_I 435 LK 436 (1221)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.8e-29 Score=308.65 Aligned_cols=276 Identities=22% Similarity=0.331 Sum_probs=215.7
Q ss_pred CccHHHHHHHHhcChhh-hccC-CceEEEEeCCCCC--HHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHHHcCCc--
Q 039822 1 GIGKTTLAQLAYNNDDV-KNHF-EKRIWVCVSDPFD--EFRIARSIIEALTGSAP----DVAEFQSLMQHIQEFVEGE-- 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~~l~~~-- 70 (711)
|+||||||++++++.+. ..+| +.++||+++...+ ....++.++..+..... .....+.....+++.+.++
T Consensus 157 G~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 236 (1249)
T 3sfz_A 157 GCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHP 236 (1249)
T ss_dssp TSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSC
T ss_pred CCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCC
Confidence 89999999999997543 5556 5777999988543 45557777777764321 2345677888889999877
Q ss_pred eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhh-hCCcCeEECCC-CChhhHHHHHHHHhcCCCCcch
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI-MGSTDVISVNV-LSEMECWSVFESLAFFGNSMEE 148 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~ 148 (711)
|+||||||||+.. .|.. .++||+||||||++.++.. ++....+.+++ |+.+||++||...++...
T Consensus 237 ~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---- 303 (1249)
T 3sfz_A 237 RSLLILDDVWDPW--VLKA-------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---- 303 (1249)
T ss_dssp SCEEEEESCCCHH--HHTT-------TCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----
T ss_pred CEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----
Confidence 9999999998743 2332 3679999999999999854 45577899996 999999999998885432
Q ss_pred hhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhh----h----hhcccchhhHHhhhhcCChhhh
Q 039822 149 RENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWEL----E----EVEKGLLAPLMLSYYELPSKVK 220 (711)
Q Consensus 149 ~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~~ 220 (711)
+...+.+.+|+++|+|+||||+++|++|+.+. ..|...++...... . .....+..+|.+||+.|+++.|
T Consensus 304 -~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 380 (1249)
T 3sfz_A 304 -EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIK 380 (1249)
T ss_dssp -TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTH
T ss_pred -hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHH
Confidence 23345689999999999999999999998765 35766665533221 1 1114688999999999999999
Q ss_pred hHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHHHHH
Q 039822 221 QCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHDFAR 300 (711)
Q Consensus 221 ~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~~~~ 300 (711)
.||++|++||+++.|+...++..|.++ .+.++.++++|+++||++... .+...+|+||++++++++
T Consensus 381 ~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~ 446 (1249)
T 3sfz_A 381 DYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLT 446 (1249)
T ss_dssp HHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHH
T ss_pred HHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHH
Confidence 999999999999999999999999543 366788999999999998543 344457899999999999
Q ss_pred Hhhccc
Q 039822 301 YISSNE 306 (711)
Q Consensus 301 ~~~~~~ 306 (711)
....++
T Consensus 447 ~~~~~~ 452 (1249)
T 3sfz_A 447 EKNRSQ 452 (1249)
T ss_dssp HHTGGG
T ss_pred hhhhHH
Confidence 887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=265.52 Aligned_cols=271 Identities=22% Similarity=0.299 Sum_probs=201.7
Q ss_pred CccHHHHHHHHhcChhh-hccCC-ceEEEEeCCCCCHHHHHHH---HHHHhcCC----CCChhhHHHHHHHHHHHcCC--
Q 039822 1 GIGKTTLAQLAYNNDDV-KNHFE-KRIWVCVSDPFDEFRIARS---IIEALTGS----APDVAEFQSLMQHIQEFVEG-- 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~~---i~~~l~~~----~~~~~~~~~~~~~~~~~l~~-- 69 (711)
|+||||||.+++++.++ ..+|+ .++|++++.. +...+... ++..+... .....+.+.....+.+.+.+
T Consensus 157 GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 235 (591)
T 1z6t_A 157 GCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKH 235 (591)
T ss_dssp TSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCC
Confidence 99999999999997666 88995 8999998765 33333333 34445421 11234456667777777765
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhhhCCcCeEEC---CCCChhhHHHHHHHHhcCCCCc
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACIMGSTDVISV---NVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++||||||||+.. . +...+++++||||||+..++..+. ...+++ ++|+.+||+++|...++...
T Consensus 236 ~~~LLVLDdv~~~~-----~----l~~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-- 303 (591)
T 1z6t_A 236 PRSLLILDDVWDSW-----V----LKAFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-- 303 (591)
T ss_dssp TTCEEEEEEECCHH-----H----HHTTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG--
T ss_pred CCeEEEEeCCCCHH-----H----HHHhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc--
Confidence 78999999998732 1 122356899999999998876643 344554 58999999999999886421
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhhh--------hhcccchhhHHhhhhcCChh
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWELE--------EVEKGLLAPLMLSYYELPSK 218 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~ 218 (711)
+...+.+.+|+++|+|+|+||..+|+.++... ..|...+........ ....++..++..||+.|+++
T Consensus 304 ---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~ 378 (591)
T 1z6t_A 304 ---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378 (591)
T ss_dssp ---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT
T ss_pred ---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH
Confidence 12234678999999999999999999998764 357766655332211 11246888999999999999
Q ss_pred hhhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccccccCCCccEEEEEechHHHHH
Q 039822 219 VKQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAKSGDGEIVCCKMHDLVHDF 298 (711)
Q Consensus 219 ~~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~mh~li~~~ 298 (711)
.|.||+++|+||+++.++...+...|..+ .+.+..++.+|+++||++... ++....|.||++++++
T Consensus 379 ~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~ 444 (591)
T 1z6t_A 379 IKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDF 444 (591)
T ss_dssp THHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHH
T ss_pred HHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHH
Confidence 99999999999999999999999988432 245678899999999998432 2334478999999999
Q ss_pred HHHhh
Q 039822 299 ARYIS 303 (711)
Q Consensus 299 ~~~~~ 303 (711)
+....
T Consensus 445 ~~~~~ 449 (591)
T 1z6t_A 445 LTEKN 449 (591)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 98874
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.1e-23 Score=215.28 Aligned_cols=294 Identities=17% Similarity=0.176 Sum_probs=229.4
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEe
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLD 397 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~ 397 (711)
..++.+.+.++.+..++. +..+++|++|++.+|. +..++. +.++++|++|++ +.+.++++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~----i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ----ITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred ccccEEEEeCCccccchh--hhhcCCccEEEccCCc----cccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 478899999988887764 4489999999999874 334555 889999999998 5678899999999
Q ss_pred cCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcC
Q 039822 398 VTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLG 477 (711)
Q Consensus 398 l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 477 (711)
+++|. +..+|. +..+++|++|++++|..+..++. +..+++|+.|++..+... ....+..+++|+.|+++++.
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-----~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-----DVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-----CCGGGGGCTTCSEEECTTSC
T ss_pred CcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-----CchhhccCCCCCEEEccCCc
Confidence 99987 888877 99999999999999976665554 788888888876544332 23347888999999998753
Q ss_pred CCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchh
Q 039822 478 GVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWV 557 (711)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 557 (711)
- ... ..+..+++|+.++++.+.+...+ .+..+++|+.|++++|.... . +. +
T Consensus 189 l-~~~-----~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~~L~~L~l~~n~l~~--~-~~-~ 239 (347)
T 4fmz_A 189 I-EDI-----SPLASLTSLHYFTAYVNQITDIT-------------------PVANMTRLNSLKIGNNKITD--L-SP-L 239 (347)
T ss_dssp C-CCC-----GGGGGCTTCCEEECCSSCCCCCG-------------------GGGGCTTCCEEECCSSCCCC--C-GG-G
T ss_pred c-ccc-----ccccCCCccceeecccCCCCCCc-------------------hhhcCCcCCEEEccCCccCC--C-cc-h
Confidence 2 221 12778899999999888655442 15678899999999998877 5 33 7
Q ss_pred hcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCccccccc
Q 039822 558 MSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWD 637 (711)
Q Consensus 558 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 637 (711)
..+++|+.|++++| .++.++.+..+++|++|++++|. ++.++. +..+++|++|++++|+ ++...
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEECCSSC-CCGGG
T ss_pred hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCEEECcCCc-CCCcC
Confidence 88999999999999 67778888999999999999985 655522 4578999999999974 44333
Q ss_pred ccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 638 YGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 638 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
+..+..+++|+.|++++|+ ++.++. +..+++|++|++++|+-
T Consensus 304 -----~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 304 -----MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp -----HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred -----hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 2346789999999999974 777765 66799999999999973
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.7e-23 Score=241.01 Aligned_cols=350 Identities=19% Similarity=0.149 Sum_probs=194.5
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchh-hhccCccCCcCc----------ccccccc-CC
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQL-FDKLTCLRALKL----------KTLCELY-NL 393 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~L~~L~l----------~~i~~L~-~L 393 (711)
..++.|.+.++.+.......+..+++|++|++.+|.. ...+|.. +.++++|++|++ ..+.++. +|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l---~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE---EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc---cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 4678888887776643333344788888888887632 1245544 777788888777 2344555 77
Q ss_pred cEEecCCCCCCccCCccccC--CccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCe
Q 039822 394 QRLDVTYCKNLEELPPGIGK--LRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRAC 471 (711)
Q Consensus 394 ~~L~l~~~~~l~~lP~~i~~--L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L 471 (711)
++|++++|.-...+|..+.. +++|++|++++|.....+|..++.+++|+.|++..+... ...+..+..+++|+.|
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDL 447 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEE
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---CcccHHHhcCCCCCEE
Confidence 77777776633355665655 667777777777444456666666776666665443222 2345556666667776
Q ss_pred eecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCC
Q 039822 472 SIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNV 551 (711)
Q Consensus 472 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 551 (711)
.+.+..- .......+..+++|+.|+++.|.+.... +..+..+++|+.|+|++|....
T Consensus 448 ~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~~-----------------p~~l~~l~~L~~L~L~~N~l~~-- 504 (768)
T 3rgz_A 448 KLWLNML----EGEIPQELMYVKTLETLILDFNDLTGEI-----------------PSGLSNCTNLNWISLSNNRLTG-- 504 (768)
T ss_dssp ECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCCSCC-----------------CGGGGGCTTCCEEECCSSCCCS--
T ss_pred ECCCCcc----cCcCCHHHcCCCCceEEEecCCcccCcC-----------------CHHHhcCCCCCEEEccCCccCC--
Confidence 6665321 1233344556667777777666544322 2345556666666666666554
Q ss_pred cCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCC--------------------
Q 039822 552 VPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESD-------------------- 610 (711)
Q Consensus 552 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~-------------------- 610 (711)
..|.++..+++|+.|++++|.-...+|. ++.+++|+.|++++|.-...+|..+......
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 2256666666666666666643334443 5556666666666654222333322110000
Q ss_pred --------------------------------------------------------------CCCCcccCCCccceeecc
Q 039822 611 --------------------------------------------------------------TDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 611 --------------------------------------------------------------~~~~~~~~~~~L~~L~l~ 628 (711)
..+..++.+++|+.|+++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 001123344555555555
Q ss_pred cCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc----------------------
Q 039822 629 DMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI---------------------- 686 (711)
Q Consensus 629 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~---------------------- 686 (711)
++. ++ +..|..++.+++|+.|++++|..-..+|..+..+++|++|++++|+.
T Consensus 665 ~N~-l~-----g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 665 HND-IS-----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp SSC-CC-----SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred CCc-cC-----CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 432 22 23355577888888888888654457888788888888888876632
Q ss_pred -hh----hhhhcccCCCCCcCCCCCCccc
Q 039822 687 -FE----QRCRKETGANWPMLRHTPDIFI 710 (711)
Q Consensus 687 -l~----~~~~~~~~~~~~~~~~~~~~~~ 710 (711)
+. ..|....+++|++++|+|.+..
T Consensus 739 ~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 739 GLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp EEESTTSCCCCSCC---------------
T ss_pred hhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 11 1366678889999999998764
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.3e-22 Score=228.69 Aligned_cols=324 Identities=17% Similarity=0.182 Sum_probs=208.0
Q ss_pred CcEEEEEEEecCCCc------------------ccccc-cccCCcccEEEeccCCCCccccccchhhhccCccCCcCccc
Q 039822 326 KKILHLMLTLYSGAL------------------VPISI-WDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKT 386 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 386 (711)
..++.|+++++.+.. +|..+ |.++++|++|++.+|.. ...+|..++++++|++|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEECcC
Confidence 478999999998887 77665 45899999999998743 346788899999999998821
Q ss_pred ------------ccccc-------CCcEEecCCCCCCccCCc--cccCCccCceeccCCCCccccccccCCCccccCccC
Q 039822 387 ------------LCELY-------NLQRLDVTYCKNLEELPP--GIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVS 445 (711)
Q Consensus 387 ------------i~~L~-------~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 445 (711)
++++. +|++|++++|. +..+|. .++++++|++|++++| .+..+| .++.+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEE
Confidence 33344 89999999987 779998 8999999999999998 566888 788888888887
Q ss_pred eeEecccCCCCcCcchhhcCcc-CCCeeecCcCCCCChhhhhHhhhcCCC--CCceEEEEeecCCCCCcc----------
Q 039822 446 RFVLGGGNDRACGLESLKKLNL-LRACSIYGLGGVSDGGKAAKAELEKKK--YLFYLRLRFDDLRDGDEE---------- 512 (711)
Q Consensus 446 ~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~---------- 512 (711)
+..+... ..+..+..+++ |+.|.+++..- . ..+..+...+ +|+.|+++.|.+....+.
T Consensus 602 Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L-~----~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 602 LDYNQIE----EIPEDFCAFTDQVEGLGFSHNKL-K----YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp CCSSCCS----CCCTTSCEECTTCCEEECCSSCC-C----SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcCCccc----cchHHHhhccccCCEEECcCCCC-C----cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 6544333 35556778888 88888887432 1 1222333333 478888887766443210
Q ss_pred ----cccCCCCchhhHHHHhhc-cCCCCCccEEEEeccCCCCCCcCcchhh-------cCcCccEEeEeCCCCCCCCCC-
Q 039822 513 ----QAGRRENEEDEDERLLDA-LGPPPNLKNLAIRKYRGRRNVVPRNWVM-------SLTNLRALVLKNCRNCEHLPP- 579 (711)
Q Consensus 513 ----~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~l~~l~~- 579 (711)
.+......- ..++.. +..+++|+.|+|++|.... +|+..+. ++++|+.|++++| .++.+|.
T Consensus 673 ~~L~~L~Ls~N~L---~~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~ 746 (876)
T 4ecn_A 673 INASTVTLSYNEI---QKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD 746 (876)
T ss_dssp CCEEEEECCSSCC---CSCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG
T ss_pred CCcCEEEccCCcC---CccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCC-CCccchHH
Confidence 000000000 011111 1245566666666665553 4222221 1226666666666 4445554
Q ss_pred CC--CCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEee
Q 039822 580 LG--KLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEI 657 (711)
Q Consensus 580 ~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 657 (711)
+. .+++|+.|++++|. ++.++.. +..+++|+.|++++++.+..-......|..+..+++|+.|++
T Consensus 747 l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp GSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred hhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 33 56666666666654 3333332 446788888888764422211112223455778999999999
Q ss_pred cCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 658 GGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 658 ~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
++| .++.+|..+. ++|+.|++++|+.
T Consensus 814 s~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 814 GSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 996 5688987653 6899999999975
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.2e-22 Score=213.15 Aligned_cols=294 Identities=16% Similarity=0.093 Sum_probs=228.1
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l----------~~i~~L~~L~ 394 (711)
..++.+++.++.+..+|...+..+++|++|++.+|. +..+ +..|+++++|++|++ ..++++++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc----ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 578999999999999998888899999999999874 3334 457899999999999 3478899999
Q ss_pred EEecCCCCCCccCCccc-cCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 395 RLDVTYCKNLEELPPGI-GKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 395 ~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
+|++++|. +..+|..+ +++++|++|++++| .+..++ ..+..+++|+.|++..+.... ..+..++.|+.|.
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH------VDLSLIPSLFHAN 192 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB------CCGGGCTTCSEEE
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc------cccccccccceee
Confidence 99999986 88998874 89999999999998 556654 457888888888765543332 1356677788887
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV 552 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 552 (711)
+.+..- ..+....+|+.|+++.|.+...+ ...+++|+.|++++|....
T Consensus 193 l~~n~l---------~~~~~~~~L~~L~l~~n~l~~~~--------------------~~~~~~L~~L~l~~n~l~~--- 240 (390)
T 3o6n_A 193 VSYNLL---------STLAIPIAVEELDASHNSINVVR--------------------GPVNVELTILKLQHNNLTD--- 240 (390)
T ss_dssp CCSSCC---------SEEECCSSCSEEECCSSCCCEEE--------------------CCCCSSCCEEECCSSCCCC---
T ss_pred cccccc---------cccCCCCcceEEECCCCeeeecc--------------------ccccccccEEECCCCCCcc---
Confidence 775321 12334568899998887544332 1234789999999998877
Q ss_pred CcchhhcCcCccEEeEeCCCCCCCC-C-CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 553 PRNWVMSLTNLRALVLKNCRNCEHL-P-PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 553 ~~~~~~~l~~L~~L~l~~~~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
..++..+++|+.|++++| .++.+ | .+..+++|+.|+++++. ++.++.. ...+++|++|+++++
T Consensus 241 -~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 241 -TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLKVLDLSHN 305 (390)
T ss_dssp -CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------SSCCTTCCEEECCSS
T ss_pred -cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCcc------------cCCCCCCCEEECCCC
Confidence 568889999999999999 45554 3 38889999999999986 7666543 236899999999996
Q ss_pred cccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 631 EELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 631 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
.++.++.. +..+++|+.|++++| .++.+| +..+++|+.|+++++|.-.
T Consensus 306 -~l~~~~~~------~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 -HLLHVERN------QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCCCCGGG------HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred -cceecCcc------ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCccc
Confidence 57666543 678999999999995 688886 5668999999999987643
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=2.1e-22 Score=226.54 Aligned_cols=310 Identities=14% Similarity=0.184 Sum_probs=230.1
Q ss_pred CcEEEEEEEecCCCc-ccccccccCCcccEEEeccCCCCcccc--ccchhhhcc------CccCCcCc---------c--
Q 039822 326 KKILHLMLTLYSGAL-VPISIWDNVKGLRSLLVDCDEYSWSSE--VLPQLFDKL------TCLRALKL---------K-- 385 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~lp~~~~~l------~~L~~L~l---------~-- 385 (711)
..++.|.+.++.... +|..+. ++++|++|++++|. .+. .+|..++++ ++|++|++ .
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~---~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNR---GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCT---TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred CCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCC---CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 579999999987654 565544 99999999999873 122 478888877 89999998 3
Q ss_pred ccccccCCcEEecCCCCCCc-cCCccccCCccCceeccCCCCccccccccCCCccc-cCccCeeEecccCCCCcCcchhh
Q 039822 386 TLCELYNLQRLDVTYCKNLE-ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIR-LRGVSRFVLGGGNDRACGLESLK 463 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~L~ 463 (711)
.++++.+|++|++++|. +. .+| .++++++|++|++++| .+..+|..+..+++ |+.|++..+.... .+..+.
T Consensus 325 ~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~ 397 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY----IPNIFD 397 (636)
T ss_dssp HHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS----CCSCCC
T ss_pred hhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc----cchhhh
Confidence 58889999999999987 76 899 8999999999999999 67799999988888 8888776554332 333444
Q ss_pred cC--ccCCCeeecCcCCCCChhhhhHhhhc-------CCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCC
Q 039822 464 KL--NLLRACSIYGLGGVSDGGKAAKAELE-------KKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPP 534 (711)
Q Consensus 464 ~l--~~L~~L~i~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (711)
.+ ++|+.|++++.. .....+..+. .+.+|+.|+++.|.+...+. ..+..+
T Consensus 398 ~~~l~~L~~L~Ls~N~----l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------------~~~~~l 456 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNE----IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-----------------ELFSTG 456 (636)
T ss_dssp TTCSSCEEEEECCSSC----TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-----------------HHHHTT
T ss_pred hcccCccCEEECcCCc----CCCcchhhhcccccccccCCCCCEEECcCCccCcCCH-----------------HHHccC
Confidence 43 378888887642 2222223344 66789999999887664431 233457
Q ss_pred CCccEEEEeccCCCCCCcCcchhhcC-------cCccEEeEeCCCCCCCCCC-CC--CCCCCCeeeecccccceEecccc
Q 039822 535 PNLKNLAIRKYRGRRNVVPRNWVMSL-------TNLRALVLKNCRNCEHLPP-LG--KLPSLEDLEVCRMESVKRVGHEF 604 (711)
Q Consensus 535 ~~L~~L~L~~~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~~l~~l~~-~~--~l~~L~~L~l~~~~~l~~l~~~~ 604 (711)
++|+.|+|++|.... +++..+... ++|+.|++++| .++.+|. +. .+++|+.|++++|. ++.+|..
T Consensus 457 ~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~- 531 (636)
T 4eco_A 457 SPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ- 531 (636)
T ss_dssp CCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-
T ss_pred CCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCcChh-
Confidence 899999999999886 644444433 39999999999 5668886 54 89999999999987 5555543
Q ss_pred ccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecC
Q 039822 605 LGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGC 684 (711)
Q Consensus 605 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c 684 (711)
+..+++|+.|++++++.+..-......+..+..+++|+.|++++| .++.+|..+. ++|+.|++++|
T Consensus 532 -----------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 532 -----------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp -----------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSC
T ss_pred -----------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCC
Confidence 447899999999764422221122223455889999999999996 5699998754 89999999999
Q ss_pred cc
Q 039822 685 PI 686 (711)
Q Consensus 685 ~~ 686 (711)
+.
T Consensus 598 ~l 599 (636)
T 4eco_A 598 PN 599 (636)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=212.86 Aligned_cols=296 Identities=18% Similarity=0.165 Sum_probs=193.9
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCcc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEE 406 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~ 406 (711)
.++.|++.++.+..++...+..+++|++|++++|.... ..| ..++++.+|++|+|++|. +..
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~--------------~~~~~l~~L~~L~L~~n~-l~~ 94 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA---VEP--------------GAFNNLFNLRTLGLRSNR-LKL 94 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---ECT--------------TTTTTCTTCCEEECCSSC-CCS
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE---eCh--------------hhhhCCccCCEEECCCCc-CCc
Confidence 45555555555555544444455555555555542111 112 235566777777777765 777
Q ss_pred CCcc-ccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 407 LPPG-IGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 407 lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
+|.. +.++++|++|++++|......|..+..+++|+.|++..+.. .......+..+++|+.|.+.+.. ....
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~----l~~~ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCN----LTSI 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC---CEECTTSSTTCTTCCEEEEESCC----CSSC
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc---ceeChhhccCCCCCCEEECCCCc----Cccc
Confidence 7654 57777777887777733333345567777777766543322 22334456677777777777642 2223
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccE
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRA 565 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 565 (711)
....+..+++|+.|+++.+.+...+ ...+..+++|+.|++++|..... + +.......+|+.
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~-----------------~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~ 228 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIR-----------------DYSFKRLYRLKVLEISHWPYLDT-M-TPNCLYGLNLTS 228 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEEC-----------------TTCSCSCTTCCEEEEECCTTCCE-E-CTTTTTTCCCSE
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeC-----------------hhhcccCcccceeeCCCCccccc-c-CcccccCccccE
Confidence 3455777888888888887654432 23566788899999988776653 3 444445568999
Q ss_pred EeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccc
Q 039822 566 LVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIK 643 (711)
Q Consensus 566 L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 643 (711)
|++++| .++.+|. +..+++|+.|+++++. ++.++... +..+++|++|+++++ .++.+. +
T Consensus 229 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~-----~ 289 (477)
T 2id5_A 229 LSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHELLRLQEIQLVGG-QLAVVE-----P 289 (477)
T ss_dssp EEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-----------CTTCTTCCEEECCSS-CCSEEC-----T
T ss_pred EECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhh-----------ccccccCCEEECCCC-ccceEC-----H
Confidence 999988 6777773 7788899999998886 66665432 346788999999884 455443 3
Q ss_pred cccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 644 GEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 644 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
..+..+++|+.|++++| .++.+|. .+..+++|+.|+++++|.
T Consensus 290 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 34678899999999984 7888876 456688899999988775
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=6.2e-22 Score=214.50 Aligned_cols=327 Identities=17% Similarity=0.177 Sum_probs=218.1
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+.++++|++|++.+|.... ...|..|+++++|++|++ ..++++.+|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 589999999999988866666699999999999874321 223567889999999998 45788899999
Q ss_pred EecCCCCCCcc-CCcc--ccCCccCceeccCCCCccccc-ccc-CCCccccCccCeeEecccCCCCcCcchhhcC--ccC
Q 039822 396 LDVTYCKNLEE-LPPG--IGKLRKLMYLDNRWTHSLRFL-SVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKL--NLL 468 (711)
Q Consensus 396 L~l~~~~~l~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l--~~L 468 (711)
|++++|. +.. .|.. ++++++|++|++++| .+..+ |.. +..+++|+.|++..+.... .....+..+ ..|
T Consensus 108 L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~~~L 182 (455)
T 3v47_A 108 LTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKS---ICEEDLLNFQGKHF 182 (455)
T ss_dssp EECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSC---CCTTTSGGGTTCEE
T ss_pred EeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccc---cChhhhhccccccc
Confidence 9999987 553 4554 889999999999998 45555 554 7788888888765443332 222333332 234
Q ss_pred CCeeecCcCCCCC----hhhhhHhhhcCCCCCceEEEEeecCCC---------------------------CCcccccCC
Q 039822 469 RACSIYGLGGVSD----GGKAAKAELEKKKYLFYLRLRFDDLRD---------------------------GDEEQAGRR 517 (711)
Q Consensus 469 ~~L~i~~~~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~l~~---------------------------~~~~~~~~~ 517 (711)
+.|.+.+..-... ........+..+++|+.|+++.|.+.. .........
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 4444443211000 000111122334455555555543321 100000000
Q ss_pred CCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC--CCCCCCCCCeeeecccc
Q 039822 518 ENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP--PLGKLPSLEDLEVCRME 595 (711)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~ 595 (711)
.... ..... ...++|+.|++++|.... .++.++..+++|+.|++++| .++.++ .++.+++|++|++++|.
T Consensus 263 ~~~~----~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 263 DPDN----FTFKG-LEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CCCT----TTTGG-GTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCcc----ccccc-ccccCceEEEecCccccc--cchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCc
Confidence 0000 00000 123689999999998887 55888899999999999999 455543 48889999999999986
Q ss_pred cceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCC
Q 039822 596 SVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKT 674 (711)
Q Consensus 596 ~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~ 674 (711)
++.++... +..+++|++|+++++ .++.+. +..+..+++|++|++++ ++++++|.. +..++
T Consensus 335 -l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 335 -LGSIDSRM-----------FENLDKLEVLDLSYN-HIRALG-----DQSFLGLPNLKELALDT-NQLKSVPDGIFDRLT 395 (455)
T ss_dssp -CCEECGGG-----------GTTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred -cCCcChhH-----------hcCcccCCEEECCCC-cccccC-----hhhccccccccEEECCC-CccccCCHhHhccCC
Confidence 66664432 347899999999996 455543 33477899999999999 578888864 56799
Q ss_pred CccEEEEecCcc
Q 039822 675 TLQRLDIHGCPI 686 (711)
Q Consensus 675 ~L~~l~l~~c~~ 686 (711)
+|+.|++++|+.
T Consensus 396 ~L~~L~l~~N~l 407 (455)
T 3v47_A 396 SLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEEccCCCc
Confidence 999999997653
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4e-22 Score=224.18 Aligned_cols=309 Identities=14% Similarity=0.165 Sum_probs=238.1
Q ss_pred CcEEEEEEEecCCCc------------------cccccc-ccCCcccEEEeccCCCCccccccchhhhccCccCCcCccc
Q 039822 326 KKILHLMLTLYSGAL------------------VPISIW-DNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKT 386 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~------------------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 386 (711)
..++.|+++++.+.. +|..+. .++++|++|++.+|.. ...+|..++++++|++|+++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT---CSSCCTTTTTCSSCCEEECTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC---CccChHHHhcCCCCCEEECcC
Confidence 489999999999887 676542 2799999999999753 346789999999999999821
Q ss_pred ------------cccc------cCCcEEecCCCCCCccCCc--cccCCccCceeccCCCCccccccccCCCccccCccCe
Q 039822 387 ------------LCEL------YNLQRLDVTYCKNLEELPP--GIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSR 446 (711)
Q Consensus 387 ------------i~~L------~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~ 446 (711)
++++ .+|++|++++|. +..+|. .++++++|++|++++|.....+| .++.+++|+.|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 3344 899999999987 779999 99999999999999994333899 8888999998887
Q ss_pred eEecccCCCCcCcchhhcCcc-CCCeeecCcCCCCChhhhhHhhhcCC--CCCceEEEEeecCCCCCcccccCCCCchhh
Q 039822 447 FVLGGGNDRACGLESLKKLNL-LRACSIYGLGGVSDGGKAAKAELEKK--KYLFYLRLRFDDLRDGDEEQAGRRENEEDE 523 (711)
Q Consensus 447 ~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 523 (711)
..+... ..+..+..++. |+.|++++..- . ..+..+... ++|+.|+++.|.+....
T Consensus 361 ~~N~l~----~lp~~l~~l~~~L~~L~Ls~N~l-~----~lp~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 418 (636)
T 4eco_A 361 AYNQIT----EIPANFCGFTEQVENLSFAHNKL-K----YIPNIFDAKSVSVMSAIDFSYNEIGSVD------------- 418 (636)
T ss_dssp CSSEEE----ECCTTSEEECTTCCEEECCSSCC-S----SCCSCCCTTCSSCEEEEECCSSCTTTTT-------------
T ss_pred CCCccc----cccHhhhhhcccCcEEEccCCcC-c----ccchhhhhcccCccCEEECcCCcCCCcc-------------
Confidence 655433 35566888888 99999987432 1 222334443 48999999998765432
Q ss_pred HHHHhhccC-------CCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CC-------CCCCCC
Q 039822 524 DERLLDALG-------PPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LG-------KLPSLE 587 (711)
Q Consensus 524 ~~~~~~~~~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~-------~l~~L~ 587 (711)
+..+. .+++|+.|++++|.... +++..+..+++|+.|++++| .++.+|. +. .+++|+
T Consensus 419 ----p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 419 ----GKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp ----TCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCC
T ss_pred ----hhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCcc
Confidence 23343 56799999999999887 74556667999999999999 5667775 22 233999
Q ss_pred eeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecC------CC
Q 039822 588 DLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGG------CR 661 (711)
Q Consensus 588 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~ 661 (711)
.|++++|. ++.++..+. ...+++|++|+++++ .++.++. .+..+++|+.|++++ +.
T Consensus 492 ~L~Ls~N~-l~~lp~~~~----------~~~l~~L~~L~Ls~N-~l~~ip~------~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 492 SIDLRFNK-LTKLSDDFR----------ATTLPYLVGIDLSYN-SFSKFPT------QPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp EEECCSSC-CCBCCGGGS----------TTTCTTCCEEECCSS-CCSSCCC------GGGGCSSCCEEECCSCBCTTCCB
T ss_pred EEECcCCc-CCccChhhh----------hccCCCcCEEECCCC-CCCCcCh------hhhcCCCCCEEECCCCcccccCc
Confidence 99999987 766765432 026899999999995 5665543 377899999999954 44
Q ss_pred CCcCCCcCCCCCCCccEEEEecCcc
Q 039822 662 KLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 662 ~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
....+|..+..+++|++|++++|..
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccccChHHHhcCCCCCEEECCCCcC
Confidence 4677898888899999999999976
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4e-21 Score=216.13 Aligned_cols=120 Identities=20% Similarity=0.139 Sum_probs=92.5
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+.++++|++|++++|... ...|..|+++++|++|++ ..++++.+|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 57888999988888888777778899999999886432 123667888888888888 45778888888
Q ss_pred EecCCCCCCccCC-ccccCCccCceeccCCCCccc--cccccCCCccccCccCeeEec
Q 039822 396 LDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLR--FLSVGIGELIRLRGVSRFVLG 450 (711)
Q Consensus 396 L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~~~~~~ 450 (711)
|++++|. +..+| ..++++++|++|++++| .+. .+|..++++++|+.|++..+.
T Consensus 109 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 109 LVAVETK-LASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTSC-CCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EEccCCc-cccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc
Confidence 8888876 66665 66888888888888888 444 468888888888888765543
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=9.6e-22 Score=224.83 Aligned_cols=318 Identities=14% Similarity=0.119 Sum_probs=208.4
Q ss_pred CCcEEEEEEEecCCC-cccccccccCCcccEEEeccCC-CCccccccchhhhccC-------ccCCcCc---------c-
Q 039822 325 EKKILHLMLTLYSGA-LVPISIWDNVKGLRSLLVDCDE-YSWSSEVLPQLFDKLT-------CLRALKL---------K- 385 (711)
Q Consensus 325 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~lp~~~~~l~-------~L~~L~l---------~- 385 (711)
...++.|.+.++... .+|..+. ++++|++|++++|. +.. ..+|..++++. +|++|++ .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 357999999998754 4665544 99999999999874 211 13677777766 8999988 3
Q ss_pred -ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccc-cCccCeeEecccCCCCcCcchhh
Q 039822 386 -TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIR-LRGVSRFVLGGGNDRACGLESLK 463 (711)
Q Consensus 386 -~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~L~ 463 (711)
.++++++|++|+|++|. +..+| .++++++|++|++++| .+..+|..+..+++ |+.|++..+.... .+..+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~----lp~~~~ 639 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY----IPNIFN 639 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCS----CCSCCC
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCc----Cchhhh
Confidence 57888999999999987 77898 7999999999999998 56688988888888 8888765544332 222222
Q ss_pred cCc--cCCCeeecCcCCCC-------------------------ChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccC
Q 039822 464 KLN--LLRACSIYGLGGVS-------------------------DGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGR 516 (711)
Q Consensus 464 ~l~--~L~~L~i~~~~~~~-------------------------~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 516 (711)
.++ +|+.|++++..-.. .........+..+++|+.|+++.|.+...+...+.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~- 718 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK- 718 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS-
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhc-
Confidence 222 25555554421100 00011112223455555555555544422210000
Q ss_pred CCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhh--cCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecc
Q 039822 517 RENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVM--SLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCR 593 (711)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~ 593 (711)
.....+..+++|+.|+|++|.... + |..+. .+++|+.|++++| .+..+|. ++.+++|+.|++++
T Consensus 719 ---------~~~~~l~nl~~L~~L~Ls~N~L~~--l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 719 ---------PKDGNYKNTYLLTTIDLRFNKLTS--L-SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp ---------CTTSCCTTGGGCCEEECCSSCCCC--C-CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCC
T ss_pred ---------cccccccccCCccEEECCCCCCcc--c-hHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCC
Confidence 000011233489999999998886 7 66665 8999999999999 5666875 88899999999987
Q ss_pred ccc------ceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCC
Q 039822 594 MES------VKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALP 667 (711)
Q Consensus 594 ~~~------l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 667 (711)
|.. ...+| ..+..+++|+.|++++|. +..+|.. -+++|+.|++++|+ +.++.
T Consensus 786 N~~ls~N~l~~~ip------------~~l~~L~~L~~L~Ls~N~-L~~Ip~~--------l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 786 QRDAEGNRILRQWP------------TGITTCPSLIQLQIGSND-IRKVDEK--------LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp CBCTTCCBCCCCCC------------TTGGGCSSCCEEECCSSC-CCBCCSC--------CCSSSCEEECCSCT-TCEEE
T ss_pred CCCcccccccccCh------------HHHhcCCCCCEEECCCCC-CCccCHh--------hcCCCCEEECCCCC-CCccC
Confidence 541 12222 235679999999999964 5767654 34799999999975 44433
Q ss_pred c-CC--------CCCCCccEEEEecCcchh
Q 039822 668 D-HL--------LQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 668 ~-~~--------~~~~~L~~l~l~~c~~l~ 688 (711)
. .+ ..+......+|.+||.+.
T Consensus 844 ~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp CGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hHHccccccchheeecCCCccccCCCCCcc
Confidence 1 11 112223344678888764
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.5e-21 Score=217.75 Aligned_cols=136 Identities=11% Similarity=-0.031 Sum_probs=98.8
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+.++++|++|++++|... ...|..|+++++|++|++ ..++++.+|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 47899999999999887777779999999999987432 234778899999999998 35778889999
Q ss_pred EecCCCCCCccC-CccccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 396 LDVTYCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 396 L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
|++++|. +..+ |..++++++|++|++++| .+..++ +.+..+++|+.|++..+... ......+..+++|+
T Consensus 110 L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 110 LFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH---YLSKEDMSSLQQAT 180 (606)
T ss_dssp EECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC---EECHHHHHTTTTCC
T ss_pred eeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc---ccChhhhhhhcccc
Confidence 9999876 7666 567888999999999988 555542 33334777777765443222 22344455555555
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=7.3e-22 Score=227.39 Aligned_cols=251 Identities=19% Similarity=0.127 Sum_probs=199.6
Q ss_pred CCcEEEEEEEecCCC-cccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccccccC
Q 039822 325 EKKILHLMLTLYSGA-LVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLCELYN 392 (711)
Q Consensus 325 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~~L~~ 392 (711)
...++.|.+.++.+. .+|..++..+++|++|++.+|.. ....|..++++++|++|++ ..++++++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE---EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC---CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 357999999998887 67777774569999999998742 2356889999999999999 12788999
Q ss_pred CcEEecCCCCCCccCCccccCCc-cCceeccCCCCccccccccCCC--ccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLR-KLMYLDNRWTHSLRFLSVGIGE--LIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~l~~lp~~i~~--l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
|++|++++|.-...+|..+.+++ +|++|++++|.....+|..+.. +++|+.|++..+... ...+..+..+++|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT---GKIPPTLSNCSELV 421 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE---EECCGGGGGCTTCC
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc---cccCHHHhcCCCCC
Confidence 99999999873348999999998 9999999999666677877766 778888876544332 34667888999999
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
.|++++.. ........+..+++|+.|+++.|.+.... +..+..+++|+.|++++|....
T Consensus 422 ~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----------------p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 422 SLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGEI-----------------PQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp EEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSCC-----------------CGGGGGCTTCCEEECCSSCCCS
T ss_pred EEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCcC-----------------CHHHcCCCCceEEEecCCcccC
Confidence 99998742 22344567888999999999999765432 4567778999999999999886
Q ss_pred CCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEecccc
Q 039822 550 NVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEF 604 (711)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~ 604 (711)
..|.++..+++|+.|++++|.-...+|. ++.+++|++|++++|.-...++..+
T Consensus 481 --~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 481 --EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred --cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 3388899999999999999964446665 8889999999999998444666543
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.2e-22 Score=220.90 Aligned_cols=294 Identities=16% Similarity=0.100 Sum_probs=225.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l----------~~i~~L~~L~ 394 (711)
..++.+++.++.+..+|...+..+++|++|++.+|.. ..+ |..|+.+++|++|+| ..++++++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678899999988889988888899999999998743 334 458899999999999 3468899999
Q ss_pred EEecCCCCCCccCCccc-cCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 395 RLDVTYCKNLEELPPGI-GKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 395 ~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
+|+|++|. +..+|..+ +++++|++|++++| .+..+| ..++.+++|+.|++..+.... . .+..++.|+.|.
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~l~~L~~L~ 198 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLFHAN 198 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGGCTTCSEEE
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhhhhhhhhhh
Confidence 99999986 88888774 89999999999999 555554 468888888888765443222 1 355677777887
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV 552 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 552 (711)
+++..- ..+....+|+.|+++.|.+...+. ..+++|+.|+|++|....
T Consensus 199 l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~~~--------------------~~~~~L~~L~L~~n~l~~--- 246 (597)
T 3oja_B 199 VSYNLL---------STLAIPIAVEELDASHNSINVVRG--------------------PVNVELTILKLQHNNLTD--- 246 (597)
T ss_dssp CCSSCC---------SEEECCTTCSEEECCSSCCCEEEC--------------------SCCSCCCEEECCSSCCCC---
T ss_pred cccCcc---------ccccCCchhheeeccCCccccccc--------------------ccCCCCCEEECCCCCCCC---
Confidence 775321 123455678999998885543321 123689999999998877
Q ss_pred CcchhhcCcCccEEeEeCCCCCCCC-C-CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 553 PRNWVMSLTNLRALVLKNCRNCEHL-P-PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 553 ~~~~~~~l~~L~~L~l~~~~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
+.++..+++|+.|++++| .+..+ | .++.+++|+.|++++|. ++.++.. ...+|+|+.|+++++
T Consensus 247 -~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLKVLDLSHN 311 (597)
T ss_dssp -CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCCEEECCSS
T ss_pred -ChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCcEEECCCC
Confidence 678899999999999999 45544 3 38889999999999987 7666543 236899999999995
Q ss_pred cccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 631 EELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 631 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
.+..++.. +..+++|+.|++++| .+..+| +..+++|+.|++++||.-.
T Consensus 312 -~l~~i~~~------~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 312 -HLLHVERN------QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCCCCGGG------HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred -CCCccCcc------cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 56655543 678999999999995 677776 5568999999999988643
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.2e-21 Score=202.16 Aligned_cols=274 Identities=18% Similarity=0.193 Sum_probs=215.2
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEecCCCCCCccCCccccCCccCce
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMY 419 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 419 (711)
.+++|++|++.++. +..+|. +..+++|++|++ +.+.++++|++|++++|. +..+| .+.++++|++
T Consensus 42 ~l~~L~~L~l~~~~----i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEK----VASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSC----CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSE
T ss_pred hcccccEEEEeCCc----cccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc-ccCch-HHcCCCcCCE
Confidence 78999999999864 334444 889999999999 347889999999999986 88876 5999999999
Q ss_pred eccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceE
Q 039822 420 LDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYL 499 (711)
Q Consensus 420 L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 499 (711)
|++++| .+..+|. +..+++|+.|++..+... ..+..+..+++|+.|.+.++.-... ..+..+++|+.|
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~----~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L 182 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHNL----SDLSPLSNMTGLNYLTVTESKVKDV------TPIANLTDLYSL 182 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTC----CCCGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCCc----ccccchhhCCCCcEEEecCCCcCCc------hhhccCCCCCEE
Confidence 999999 6777776 777888888776544332 2455688899999999987543211 127789999999
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC
Q 039822 500 RLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP 579 (711)
Q Consensus 500 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 579 (711)
+++.|.+...+ .+..+++|+.|+++++.... . + .+..+++|+.|++++| .++.++.
T Consensus 183 ~l~~n~l~~~~-------------------~~~~l~~L~~L~l~~n~l~~--~-~-~~~~~~~L~~L~l~~n-~l~~~~~ 238 (347)
T 4fmz_A 183 SLNYNQIEDIS-------------------PLASLTSLHYFTAYVNQITD--I-T-PVANMTRLNSLKIGNN-KITDLSP 238 (347)
T ss_dssp ECTTSCCCCCG-------------------GGGGCTTCCEEECCSSCCCC--C-G-GGGGCTTCCEEECCSS-CCCCCGG
T ss_pred EccCCcccccc-------------------cccCCCccceeecccCCCCC--C-c-hhhcCCcCCEEEccCC-ccCCCcc
Confidence 99888654432 25678899999999998877 4 2 2788999999999999 6777777
Q ss_pred CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecC
Q 039822 580 LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGG 659 (711)
Q Consensus 580 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 659 (711)
+..+++|++|++++|. ++.++. +..+++|++|++++| .+++++ .+..+++|+.|++++
T Consensus 239 ~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQ-ISDINA-------------VKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-------------GTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCS
T ss_pred hhcCCCCCEEECCCCc-cCCChh-------------HhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEEECcC
Confidence 8899999999999986 555421 457899999999996 566553 256899999999999
Q ss_pred CCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 660 CRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 660 c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
|......|..+..+++|++|++++|+-
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CcCCCcChhHhhccccCCEEEccCCcc
Confidence 754334445667799999999999974
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=5.2e-21 Score=207.47 Aligned_cols=305 Identities=18% Similarity=0.200 Sum_probs=194.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEe
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLD 397 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~ 397 (711)
..++.+.+.++.+..++. +..+++|++|++++|. +..+|. ++++++|++|++ ..++++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ----LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCc----cCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 367888888887777664 3478888888888763 334454 788888888888 3377888888888
Q ss_pred cCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcC
Q 039822 398 VTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLG 477 (711)
Q Consensus 398 l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 477 (711)
+++|. +..+|. +.++++|++|++++| .+..+|. ++.+++|+.|++.. . ......+..+++|+.|++++..
T Consensus 119 L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~----~--~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 119 LFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN----Q--VTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE----S--CCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC----c--ccCchhhccCCCCCEEECcCCc
Confidence 88876 777776 888888888888888 5666653 67777777776532 1 1223446777777777777643
Q ss_pred CCCChhhhhHhhhcCCCCCceEEEEeecCCCCCccc-------ccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCC
Q 039822 478 GVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQ-------AGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRN 550 (711)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 550 (711)
- ... ..+..+++|+.|+++.|.+....... +......... ...+..+++|+.|++++|....
T Consensus 189 l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~- 257 (466)
T 1o6v_A 189 V-SDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQISN- 257 (466)
T ss_dssp C-CCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCC-
T ss_pred C-CCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc----chhhhcCCCCCEEECCCCcccc-
Confidence 1 211 23566777777777777554432100 0000000000 0234445666666666665554
Q ss_pred CcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 551 VVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 551 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
. +. +..+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++. +..+++|+.|++++|
T Consensus 258 -~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 258 -L-AP-LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDISP-------------ISNLKNLTYLTLYFN 319 (466)
T ss_dssp -C-GG-GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCGG-------------GGGCTTCSEEECCSS
T ss_pred -c-hh-hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCchh-------------hcCCCCCCEEECcCC
Confidence 3 11 455666666666666 44455555666666666666654 333321 446788888888886
Q ss_pred cccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 631 EELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 631 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
.++.+.. +..+++|+.|++++| .++.++ .+..+++|+.|++++|..
T Consensus 320 -~l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 320 -NISDISP-------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp -CCSCCGG-------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred -cCCCchh-------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 3443321 457899999999986 677775 566789999999998854
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1e-20 Score=210.19 Aligned_cols=335 Identities=17% Similarity=0.164 Sum_probs=213.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+..+++|++|++++|... ...|..|+++++|++|++ ..++++.+|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 57999999999998887666679999999999987432 233577999999999999 33888999999
Q ss_pred EecCCCCCCcc--CCccccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 396 LDVTYCKNLEE--LPPGIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 396 L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
|++++|. +.. .|..++++++|++|++++|..+..+| ..+..+++|+.|++..+... ...+..+..+++|+.|.
T Consensus 103 L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---EECTTTTTTCSEEEEEE
T ss_pred EECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---ccChhhhhccccCceEe
Confidence 9999987 664 57789999999999999996677777 46888999988887655433 22334444444444444
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCC--------------------------------------------
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRD-------------------------------------------- 508 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-------------------------------------------- 508 (711)
+..... . ......+..+++|+.|+++.|.+..
T Consensus 179 l~~n~~-~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 179 LHLSES-A---FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EECSBS-T---THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred cccCcc-c---ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 432211 0 0000111122222333322222211
Q ss_pred ----------------------------------------------------------------------CCccccc-CC
Q 039822 509 ----------------------------------------------------------------------GDEEQAG-RR 517 (711)
Q Consensus 509 ----------------------------------------------------------------------~~~~~~~-~~ 517 (711)
.+..... ..
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 1111000 00
Q ss_pred -----CCch-hhHHHH---hhccCCCCCccEEEEeccCCCCCCcCc--chhhcCcCccEEeEeCCCCCCCCCC-CCCCCC
Q 039822 518 -----ENEE-DEDERL---LDALGPPPNLKNLAIRKYRGRRNVVPR--NWVMSLTNLRALVLKNCRNCEHLPP-LGKLPS 585 (711)
Q Consensus 518 -----~~~~-~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~ 585 (711)
.... ...... ...+..+++|+.|++++|.... +++ ..+..+++|+.|++++| .++.+|. ++.+++
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEK 411 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTT
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCC-CCccCChhhccccc
Confidence 0000 000111 2235667788888888877665 422 34677888888888888 6667775 677788
Q ss_pred CCeeeecccccceEecccccc--------CCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEee
Q 039822 586 LEDLEVCRMESVKRVGHEFLG--------VESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEI 657 (711)
Q Consensus 586 L~~L~l~~~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 657 (711)
|++|++++|. ++.++..... ...+. .....+++|++|+++++ +++.++. ...+++|+.|++
T Consensus 412 L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~--~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~L 480 (549)
T 2z81_A 412 MRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLD--SFSLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKI 480 (549)
T ss_dssp CCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCS--CCCCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEEC
T ss_pred ccEEECCCCC-cccccchhcCCceEEECCCCChh--hhcccCChhcEEECCCC-ccCcCCC-------cccCccCCEEec
Confidence 8888888876 5544432110 00000 01236788888888885 5665542 346899999999
Q ss_pred cCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 658 GGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 658 ~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
++| .++.+|. .+..+++|+.|++++||.
T Consensus 481 s~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 481 SRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 995 6777765 467799999999988874
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=209.86 Aligned_cols=339 Identities=17% Similarity=0.139 Sum_probs=201.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEe
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLD 397 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~ 397 (711)
..++.|+++++.+..++...+..+++|++|++++|... ...|..|+++++|++|++ +.. .+.+|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEe
Confidence 58999999999998888766779999999999987432 233778999999999999 222 788999999
Q ss_pred cCCCCCCcc--CCccccCCccCceeccCCCCccccccccCCCcccc--CccCeeEecccCCCCcCcchhh----------
Q 039822 398 VTYCKNLEE--LPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRL--RGVSRFVLGGGNDRACGLESLK---------- 463 (711)
Q Consensus 398 l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~~~~~~~~~~~~~~~~~L~---------- 463 (711)
+++|. +.. +|..++++++|++|++++| .+.. ..+..+++| +.|++..+.... ....+..+.
T Consensus 97 L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~~n~l~~-~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 97 LSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLVLGETYG-EKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CCSSC-CSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEEECTTTT-SSCCTTTTTTCCEEEEEEE
T ss_pred ccCCc-cccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEeecccccc-cccccccccccccceEEEE
Confidence 99987 654 6788999999999999998 4443 346667777 777766554300 111222222
Q ss_pred ----------------cCccCCCeeecCcCCCCC---hhhhhHhhhcCC---------------------------CCCc
Q 039822 464 ----------------KLNLLRACSIYGLGGVSD---GGKAAKAELEKK---------------------------KYLF 497 (711)
Q Consensus 464 ----------------~l~~L~~L~i~~~~~~~~---~~~~~~~~l~~~---------------------------~~L~ 497 (711)
.++.|+.+++.+...... ... ....+..+ ++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeec-chhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 244455555443210000 011 11123333 3566
Q ss_pred eEEEEeecCCC-CCcccc----cCCC------------Cch-hhHHHHhh----------------c--cCCCCCccEEE
Q 039822 498 YLRLRFDDLRD-GDEEQA----GRRE------------NEE-DEDERLLD----------------A--LGPPPNLKNLA 541 (711)
Q Consensus 498 ~L~l~~~~l~~-~~~~~~----~~~~------------~~~-~~~~~~~~----------------~--~~~~~~L~~L~ 541 (711)
.|+++.|.+.+ .+...+ .... ... ........ . ...+++|+.|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 66666665432 111100 0000 000 00001100 0 14567777777
Q ss_pred EeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC---C-CCCCCCCCeeeecccccceE-ecccccc-CCCCCC---
Q 039822 542 IRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP---P-LGKLPSLEDLEVCRMESVKR-VGHEFLG-VESDTD--- 612 (711)
Q Consensus 542 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~-~~~l~~L~~L~l~~~~~l~~-l~~~~~~-~~~~~~--- 612 (711)
+++|.... ..|.++..+++|+.|++++| .++.++ . ++.+++|++|++++|. +.. ++...+. ...+..
T Consensus 331 Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 331 FSNNLLTD--TVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CCSSCCCT--TTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEEC
T ss_pred eECCccCh--hhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEEC
Confidence 77777665 33666677777888887777 444332 2 6667777777777766 443 4433111 000000
Q ss_pred ------CCcccCC-CccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCCCccEEEEecC
Q 039822 613 ------GSSVIAF-PKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIHGC 684 (711)
Q Consensus 613 ------~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~~c 684 (711)
......+ ++|+.|+++++ +++.++. .+..+++|+.|++++| +++.+|.. +..+++|++|++++|
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK------QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCcchhhhhcccCCEEECCCC-cccccch------hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 0000112 46666666663 4444433 3568899999999985 78888875 777889999999887
Q ss_pred cc
Q 039822 685 PI 686 (711)
Q Consensus 685 ~~ 686 (711)
|.
T Consensus 479 ~~ 480 (520)
T 2z7x_B 479 PW 480 (520)
T ss_dssp CB
T ss_pred CC
Confidence 74
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.7e-20 Score=203.51 Aligned_cols=293 Identities=19% Similarity=0.257 Sum_probs=186.7
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEe
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLD 397 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~ 397 (711)
..++.|+++++.+..++. +..+++|++|++.+|.. ..++. ++++++|++|++ +.++++++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l----~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI----ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCcc----ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEE
Confidence 356666666666665554 34666666666665532 22333 566666666666 2355566666666
Q ss_pred cCCCCCCccCCc--------------------cccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCc
Q 039822 398 VTYCKNLEELPP--------------------GIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRAC 457 (711)
Q Consensus 398 l~~~~~l~~lP~--------------------~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~ 457 (711)
+++|. +..+|. .+.++++|++|++++| .+..++. +..+++|+.|++..+...
T Consensus 141 l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~----- 212 (466)
T 1o6v_A 141 LSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV-LAKLTNLESLIATNNQIS----- 212 (466)
T ss_dssp EEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSCCC-----
T ss_pred CCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh-hccCCCCCEEEecCCccc-----
Confidence 66554 444442 1445555555555555 3333332 344444444443322211
Q ss_pred CcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCc
Q 039822 458 GLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNL 537 (711)
Q Consensus 458 ~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 537 (711)
....+..+++|+.|++++..- ... ..+..+++|+.|+++.|.+...+ .+..+++|
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~-------------------~~~~l~~L 267 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQISNLA-------------------PLSGLTKL 267 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCG-------------------GGTTCTTC
T ss_pred ccccccccCCCCEEECCCCCc-ccc-----hhhhcCCCCCEEECCCCccccch-------------------hhhcCCCC
Confidence 112244555555555554321 111 23555666666666666443321 26778999
Q ss_pred cEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCccc
Q 039822 538 KNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVI 617 (711)
Q Consensus 538 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 617 (711)
+.|++++|.... . +. +..+++|+.|++++| .++.++.++.+++|+.|++++|. +..++. +.
T Consensus 268 ~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~ 328 (466)
T 1o6v_A 268 TELKLGANQISN--I-SP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDISP-------------VS 328 (466)
T ss_dssp SEEECCSSCCCC--C-GG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCGG-------------GG
T ss_pred CEEECCCCccCc--c-cc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCchh-------------hc
Confidence 999999998877 5 33 778999999999999 67777778899999999999986 544432 34
Q ss_pred CCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcch
Q 039822 618 AFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIF 687 (711)
Q Consensus 618 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l 687 (711)
.+++|++|++++| .++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|+..
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS-------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred cCccCCEeECCCC-ccCCch-------hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCccc
Confidence 7899999999996 565542 3678999999999997 5666654 677999999999999753
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=217.88 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=93.2
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l----------~~i~~L~~L~ 394 (711)
..++.|+++++.+..++...+.++++|++|++++|.. ...+ |..|+++++|++|+| ..++++.+|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 5899999999999888777777999999999998732 2334 778899999999998 4678889999
Q ss_pred EEecCCCCCCc-cCCcc--ccCCccCceeccCCCCccccc-c-ccCCCccccCccCeeEe
Q 039822 395 RLDVTYCKNLE-ELPPG--IGKLRKLMYLDNRWTHSLRFL-S-VGIGELIRLRGVSRFVL 449 (711)
Q Consensus 395 ~L~l~~~~~l~-~lP~~--i~~L~~L~~L~l~~~~~l~~l-p-~~i~~l~~L~~L~~~~~ 449 (711)
+|+|++|. +. .+|.. +++|++|++|++++| .+..+ | ..++++++|+.|++..+
T Consensus 101 ~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 101 ELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred EeeCcCCC-CCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 99999887 54 35655 888999999999988 44444 2 45788888888876554
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=202.11 Aligned_cols=271 Identities=18% Similarity=0.117 Sum_probs=149.6
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..++.|.+.++.+..++...+.++++|++|++.+|. +..+|.. .++++.+|++|+|++|. +.
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~-------------~~~~l~~L~~L~Ls~n~-i~ 117 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR----LKLIPLG-------------VFTGLSNLTKLDISENK-IV 117 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCSCCTT-------------SSTTCTTCCEEECTTSC-CC
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc----CCccCcc-------------cccCCCCCCEEECCCCc-cc
Confidence 579999999999988866667799999999999874 3344432 23445555555555554 33
Q ss_pred c-CCccccCCccCceeccCCCCccccc-cccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChh
Q 039822 406 E-LPPGIGKLRKLMYLDNRWTHSLRFL-SVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGG 483 (711)
Q Consensus 406 ~-lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 483 (711)
. .|..+.++++|++|++++| .+..+ |..+..+++|+.|++..+... ......+..+++|+.|.+.+.. ..
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~----i~ 189 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT---SIPTEALSHLHGLIVLRLRHLN----IN 189 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS---SCCHHHHTTCTTCCEEEEESCC----CC
T ss_pred cCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc---ccChhHhcccCCCcEEeCCCCc----Cc
Confidence 3 3444555666666666555 33332 334555555555544333221 2223345555556665555421 11
Q ss_pred hhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCc
Q 039822 484 KAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNL 563 (711)
Q Consensus 484 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 563 (711)
......+..+++|+.|+++.+..... ++.......+|+.|++++|.... +++..+..+++|
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L 250 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDT-----------------MTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYL 250 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCE-----------------ECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTC
T ss_pred EeChhhcccCcccceeeCCCCccccc-----------------cCcccccCccccEEECcCCcccc--cCHHHhcCcccc
Confidence 12223455566666666665532111 01122223466777777666655 433455666677
Q ss_pred cEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCc
Q 039822 564 RALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTA 641 (711)
Q Consensus 564 ~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 641 (711)
+.|+++++ .++.++. +..+++|+.|+++++. ++.+.... +..+++|++|+++++ .++.++.
T Consensus 251 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~~~~--- 313 (477)
T 2id5_A 251 RFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA-----------FRGLNYLRVLNVSGN-QLTTLEE--- 313 (477)
T ss_dssp CEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT-----------BTTCTTCCEEECCSS-CCSCCCG---
T ss_pred CeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECHHH-----------hcCcccCCEEECCCC-cCceeCH---
Confidence 77777766 3444443 5566677777776665 44443221 335666777777663 4544432
Q ss_pred cccccccCCcccEEeecCC
Q 039822 642 IKGEIIIMPRLSFLEIGGC 660 (711)
Q Consensus 642 ~~~~~~~l~~L~~L~l~~c 660 (711)
..+..+++|+.|+++++
T Consensus 314 --~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 314 --SVFHSVGNLETLILDSN 330 (477)
T ss_dssp --GGBSCGGGCCEEECCSS
T ss_pred --hHcCCCcccCEEEccCC
Confidence 22445666777776664
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4.5e-21 Score=215.67 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=88.5
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+.++++|++|++++|... ...|..|+++++|++|++ ..++++.+|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ---SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc---ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 57999999999998887777779999999999987432 223788999999999998 35788999999
Q ss_pred EecCCCCCCc--cCCccccCCccCceeccCCCCccccc-cccCCCcccc
Q 039822 396 LDVTYCKNLE--ELPPGIGKLRKLMYLDNRWTHSLRFL-SVGIGELIRL 441 (711)
Q Consensus 396 L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L 441 (711)
|++++|. +. .+|..+++|++|++|++++| .+..+ |..++.+++|
T Consensus 133 L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 133 LNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLREN 179 (606)
T ss_dssp EECCSSC-CCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHC
T ss_pred EeCCCCc-ccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhcc
Confidence 9999987 65 57999999999999999998 44444 3334444433
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=212.63 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=42.5
Q ss_pred ccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 616 VIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 616 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
+..+++|++|++++| .++.+. +..+..+++|+.|++++| +++.+|. .+..+++|+.|++++||.
T Consensus 466 ~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 466 FTELRNLTFLDLSQC-QLEQLS-----PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCTTCCEEECTTS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhcccCCCEEECCCC-ccccCC-----hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 445667777777664 344332 234667888888888885 5666654 466788888888887653
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3.8e-20 Score=205.75 Aligned_cols=340 Identities=18% Similarity=0.143 Sum_probs=203.5
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEe
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLD 397 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~ 397 (711)
..++.|+++++.+..++...+..+++|++|++++|... ...|..|+++++|++|++ +.. .+.+|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEE
Confidence 58999999999999888777779999999999987432 223677899999999998 222 788999999
Q ss_pred cCCCCCCccC--CccccCCccCceeccCCCCccccccccCCCcccc--CccCeeEecccCCCCcCcchhh----------
Q 039822 398 VTYCKNLEEL--PPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRL--RGVSRFVLGGGNDRACGLESLK---------- 463 (711)
Q Consensus 398 l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~~~~~~~~~~~~~~~~~L~---------- 463 (711)
+++|. +..+ |..++++++|++|++++| .+.. ..+..+++| +.|++..+.... ....+..+.
T Consensus 128 Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~L~~n~l~~-~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 128 LSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHLHLSCILLDLVSYHI-KGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp CCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTSCEEEEEEEESSCCC-CSSSCCEEEECCEEEEEEE
T ss_pred CCCCC-ccccCchHhhcccCcccEEecCCC-cccc--CchhhhhhceeeEEEeecccccc-cccCcccccccCcceEEEE
Confidence 99987 7765 478999999999999988 4443 344555555 666554433200 011112222
Q ss_pred ----------------cCccCCCeeecCcCC---------------------------CCChhhhhHhhhcCCCCCceEE
Q 039822 464 ----------------KLNLLRACSIYGLGG---------------------------VSDGGKAAKAELEKKKYLFYLR 500 (711)
Q Consensus 464 ----------------~l~~L~~L~i~~~~~---------------------------~~~~~~~~~~~l~~~~~L~~L~ 500 (711)
.+++|+.+++.+... +....-..........+|+.|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 233344444433110 0000000000111223677777
Q ss_pred EEeecCCC-CCcccccC-----------------CCCchhhHHHHh----------------h--ccCCCCCccEEEEec
Q 039822 501 LRFDDLRD-GDEEQAGR-----------------RENEEDEDERLL----------------D--ALGPPPNLKNLAIRK 544 (711)
Q Consensus 501 l~~~~l~~-~~~~~~~~-----------------~~~~~~~~~~~~----------------~--~~~~~~~L~~L~L~~ 544 (711)
++.|.+.+ .+...+.. ............ . ....+++|+.|++++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 77776542 12111000 000000000010 0 014567888888888
Q ss_pred cCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC----CCCCCCCCeeeecccccceE-eccccccC-CCCCC------
Q 039822 545 YRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP----LGKLPSLEDLEVCRMESVKR-VGHEFLGV-ESDTD------ 612 (711)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~----~~~l~~L~~L~l~~~~~l~~-l~~~~~~~-~~~~~------ 612 (711)
|.... ..+.++..+++|+.|+++++ .++.++. ++.+++|++|+++++. ++. ++...+.. ..+..
T Consensus 363 n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 363 NVFTD--SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp SCCCT--TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS
T ss_pred Ccccc--chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC
Confidence 77766 33667777888888888877 5555542 6677788888887776 433 44332110 00000
Q ss_pred ---CCcccCC-CccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCCCccEEEEecCcc
Q 039822 613 ---GSSVIAF-PKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 613 ---~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~~c~~ 686 (711)
......+ ++|+.|+++++ .++.++.. +..+++|+.|++++ ++++.+|.. +..+++|+.|+++++|.
T Consensus 439 ~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~------~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 439 MLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD------VTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCGGGGSSCCTTCSEEECCSS-CCCCCCTT------TTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCcchhhhhcCcCCEEECCCC-cCcccChh------hcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 0001123 57788888774 56655543 55899999999999 478899886 77889999999998874
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=6.2e-20 Score=197.35 Aligned_cols=300 Identities=16% Similarity=0.143 Sum_probs=200.5
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-------cccccccCCcEEec
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-------KTLCELYNLQRLDV 398 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-------~~i~~L~~L~~L~l 398 (711)
..++.|+++++.+..+| . +..+++|++|++++|... .+| ++.+++|++|++ -+++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~----~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNIT----TLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCS----CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCC----eEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence 47888999988888776 3 448899999999987533 344 788889999888 34778889999999
Q ss_pred CCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCC
Q 039822 399 TYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGG 478 (711)
Q Consensus 399 ~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 478 (711)
++|. +..+| ++++++|++|++++| .+..+| ++.+++|+.|++..+.... .+ .+..+++|+.|++++..
T Consensus 114 ~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 114 DTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp CSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCTTCCEEECCSSC-
T ss_pred CCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccccCCcCCEEECCCCc-
Confidence 9876 77776 888999999999988 566664 6777777777654432211 11 46677888888887642
Q ss_pred CCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhh
Q 039822 479 VSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVM 558 (711)
Q Consensus 479 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 558 (711)
+... .+..+++|+.|+++.|.+... .+..+++|+.|++++|.... + | +.
T Consensus 182 l~~l------~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N~l~~--i-p--~~ 230 (457)
T 3bz5_A 182 ITEL------DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSNKLTE--I-D--VT 230 (457)
T ss_dssp CCCC------CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSSCCSC--C-C--CT
T ss_pred ccee------ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCCcccc--c-C--cc
Confidence 1211 166778888888888754432 24567888888888888777 5 4 56
Q ss_pred cCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDY 638 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 638 (711)
.+++|+.|+++++ .++.+| .+.+++|+.|+++.+. ++.+....... ........+++|+.|++++|+.+..++.
T Consensus 231 ~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~---~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 231 PLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQ---LIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTCC-CSCCCCTTCTT---CCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred ccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCCC-CCEEECCCCcc---CCcccccccccCCEEECCCCcccceecc
Confidence 7888888888888 555554 4455555555554432 33332211100 0000123578888888888876665543
Q ss_pred cC--ccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCc
Q 039822 639 GT--AIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 639 ~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
.. ...-.+..+++|+.|++++ ++++.++ +..+++|+.|+++++.
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCSSC
T ss_pred CCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCCCC
Confidence 20 0011245677888888887 4677774 6668888888887653
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=5.1e-20 Score=204.75 Aligned_cols=327 Identities=16% Similarity=0.084 Sum_probs=198.6
Q ss_pred EEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc----------cccccccCCcEE
Q 039822 328 ILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL----------KTLCELYNLQRL 396 (711)
Q Consensus 328 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l----------~~i~~L~~L~~L 396 (711)
.+.++++++.+..+|.... ++|++|++++|.. ..+ |..|+++++|++|++ ..++++.+|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEcCCCCCccCCCCCC---CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3788999999988887654 8999999998743 334 468999999999999 457889999999
Q ss_pred ecCCCCCCccCCccccCCccCceeccCCCCcccccc--ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeec
Q 039822 397 DVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLS--VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIY 474 (711)
Q Consensus 397 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 474 (711)
++++|. +..+|.. .+++|++|++++| .+..+| ..++++++|+.|++...... ...+..+..+ +|+.|.+.
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~L-~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHL-HLSCILLD 177 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC---TTTTGGGTTS-CEEEEEEE
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc---cCchhhhhhc-eeeEEEee
Confidence 999987 8899987 8999999999999 566654 68999999999987664432 2334444444 34777776
Q ss_pred CcCC--CCChhh--------------------------------------------------hhHhhhcCCCCCceEEEE
Q 039822 475 GLGG--VSDGGK--------------------------------------------------AAKAELEKKKYLFYLRLR 502 (711)
Q Consensus 475 ~~~~--~~~~~~--------------------------------------------------~~~~~l~~~~~L~~L~l~ 502 (711)
+..- ...... .....+..+++|+.+.+.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 5321 000000 001122333334444443
Q ss_pred eecCCCCC------------cccccCCCCchhhHHHHhhcc-----CCC--------------------------CCccE
Q 039822 503 FDDLRDGD------------EEQAGRRENEEDEDERLLDAL-----GPP--------------------------PNLKN 539 (711)
Q Consensus 503 ~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~-----~~~--------------------------~~L~~ 539 (711)
.+.+.... ...+...... ....++..+ ..+ .+|+.
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLT--ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEE--ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccE--eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 33221100 0000000000 000011111 111 33566
Q ss_pred EEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC-CCCCCCCCCeeeecccccceEecc---ccccCCCC-----
Q 039822 540 LAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP-PLGKLPSLEDLEVCRMESVKRVGH---EFLGVESD----- 610 (711)
Q Consensus 540 L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~~----- 610 (711)
|+++++.... . .....+++|+.|++++|.-...+| .++.+++|+.|+++++. ++.++. .+.....+
T Consensus 336 L~l~~n~~~~--~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 336 LSISDTPFIH--M--VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp EEEESSCCCC--C--CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC
T ss_pred EEccCCCccc--c--cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC
Confidence 6666655433 1 112578999999999995333344 48899999999999886 665432 11110000
Q ss_pred --------CCCCcccCCCccceeecccCcccccccccCccccccccC-CcccEEeecCCCCCcCCCcCCCCCCCccEEEE
Q 039822 611 --------TDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIM-PRLSFLEIGGCRKLKALPDHLLQKTTLQRLDI 681 (711)
Q Consensus 611 --------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l 681 (711)
........+++|++|+++++. ++... ...+ ++|+.|++++| +++.+|..+..+++|++|++
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV--------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNV 480 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG--------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEEC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCC-CCcch--------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEEC
Confidence 000112334455555554432 22111 1234 68999999985 78899987778999999999
Q ss_pred ecCcc
Q 039822 682 HGCPI 686 (711)
Q Consensus 682 ~~c~~ 686 (711)
++|.-
T Consensus 481 ~~N~l 485 (562)
T 3a79_B 481 ASNQL 485 (562)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 99853
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.6e-20 Score=198.79 Aligned_cols=275 Identities=17% Similarity=0.160 Sum_probs=216.5
Q ss_pred cCCcccEEEeccCCCCccccccchh-hhccCccCCcCc----------cccccccCCcEEecCCCCCCccCC-ccccCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQL-FDKLTCLRALKL----------KTLCELYNLQRLDVTYCKNLEELP-PGIGKLR 415 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~-~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~ 415 (711)
.++++++|++.++ .+..+|.. +.++++|++|++ ..++++.+|++|++++|. +..+| ..+++++
T Consensus 43 ~l~~l~~l~l~~~----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred ccCCceEEEecCC----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence 5799999999976 45566655 789999999999 367889999999999987 77765 5589999
Q ss_pred cCceeccCCCCccccccccC-CCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCC
Q 039822 416 KLMYLDNRWTHSLRFLSVGI-GELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKK 494 (711)
Q Consensus 416 ~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 494 (711)
+|++|++++| .+..+|..+ ..+++|+.|++..+... ......+..+++|+.|.+++..- .. ..+..++
T Consensus 118 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l-~~------~~~~~l~ 186 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRL-TH------VDLSLIP 186 (390)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---BCCTTTTSSCTTCCEEECCSSCC-SB------CCGGGCT
T ss_pred CCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC---ccChhhccCCCCCCEEECCCCcC-Cc------ccccccc
Confidence 9999999999 788888874 88899998877654333 33445678889999999987432 11 1356678
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCC
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNC 574 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 574 (711)
+|+.++++.+.+. .+..+++|+.|+++++.... . +.. .+++|+.|++++| .+
T Consensus 187 ~L~~L~l~~n~l~----------------------~~~~~~~L~~L~l~~n~l~~--~-~~~--~~~~L~~L~l~~n-~l 238 (390)
T 3o6n_A 187 SLFHANVSYNLLS----------------------TLAIPIAVEELDASHNSINV--V-RGP--VNVELTILKLQHN-NL 238 (390)
T ss_dssp TCSEEECCSSCCS----------------------EEECCSSCSEEECCSSCCCE--E-ECC--CCSSCCEEECCSS-CC
T ss_pred ccceeeccccccc----------------------ccCCCCcceEEECCCCeeee--c-ccc--ccccccEEECCCC-CC
Confidence 9999999887432 33456789999999998877 4 332 3689999999999 67
Q ss_pred CCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccE
Q 039822 575 EHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSF 654 (711)
Q Consensus 575 ~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~ 654 (711)
+..+.+..+++|++|+++++. ++.+.... +..+++|++|+++++ .++.++.. ...+|+|+.
T Consensus 239 ~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~------~~~l~~L~~ 299 (390)
T 3o6n_A 239 TDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALNLY------GQPIPTLKV 299 (390)
T ss_dssp CCCGGGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECCSS-CCCEEECS------SSCCTTCCE
T ss_pred cccHHHcCCCCccEEECCCCc-CCCcChhH-----------ccccccCCEEECCCC-cCcccCcc------cCCCCCCCE
Confidence 777888999999999999987 65553322 447899999999984 67766543 568999999
Q ss_pred EeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 655 LEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 655 L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
|++++| .++.+|..+..+++|+.|++++|+-
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCC-cceecCccccccCcCCEEECCCCcc
Confidence 999996 7889988777789999999999974
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5e-20 Score=207.16 Aligned_cols=257 Identities=17% Similarity=0.176 Sum_probs=123.9
Q ss_pred cccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccc-cccCCCccccCccCeeEecccCCCCcCcchhhcC
Q 039822 387 LCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFL-SVGIGELIRLRGVSRFVLGGGNDRACGLESLKKL 465 (711)
Q Consensus 387 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l 465 (711)
++++++|++|++++|. +..+|..+.++++|++|++++| .+..+ |..+..+++|+.|++..+.... ......+..+
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTC
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhcc
Confidence 4455666666666654 5566666666666666666666 33333 4455555555555543332211 1122235555
Q ss_pred ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEecc
Q 039822 466 NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKY 545 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 545 (711)
++|+.|++++..- ... ......+..+++|+.|+++.|.+.... +..+..+++|+.|++++|
T Consensus 350 ~~L~~L~l~~n~l-~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 350 ENLRELDLSHDDI-ETS-DCCNLQLRNLSHLQSLNLSYNEPLSLK-----------------TEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TTCCEEECCSSCC-CEE-EESTTTTTTCTTCCEEECCSCSCEEEC-----------------TTTTTTCTTCSEEECTTC
T ss_pred CcCCEEECCCCcc-ccc-cCcchhcccCCCCCEEECCCCcCCcCC-----------------HHHhcCCccCCeEECCCC
Confidence 6666666554321 000 001234555666666666655432221 223334444555555444
Q ss_pred CCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeeccccc--------------------------ce
Q 039822 546 RGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMES--------------------------VK 598 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~--------------------------l~ 598 (711)
..... .++.++..+++|+.|++++|.-....|. ++.+++|++|++++|.- ++
T Consensus 411 ~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 411 RLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred cCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 43331 1122344444555555554421111121 34444455554444431 22
Q ss_pred EeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCcc
Q 039822 599 RVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQ 677 (711)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~ 677 (711)
.++. ..+..+++|++|+++++ .++... +..+..+++| .|++++| .++.++. .+..+++|+
T Consensus 490 ~~~~-----------~~~~~l~~L~~L~Ls~N-~l~~~~-----~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 490 SIDQ-----------HAFTSLKMMNHVDLSHN-RLTSSS-----IEALSHLKGI-YLNLASN-HISIILPSLLPILSQQR 550 (606)
T ss_dssp EECT-----------TTTTTCTTCCEEECCSS-CCCGGG-----GGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSS
T ss_pred ccCh-----------hhhccccCCCEEECCCC-ccCcCC-----hhHhCccccc-EEECcCC-cccccCHhhcccCCCCC
Confidence 2211 12345566666666664 333322 2345566777 7777774 4555543 345567778
Q ss_pred EEEEecCcc
Q 039822 678 RLDIHGCPI 686 (711)
Q Consensus 678 ~l~l~~c~~ 686 (711)
.|++++||.
T Consensus 551 ~L~l~~N~~ 559 (606)
T 3t6q_A 551 TINLRQNPL 559 (606)
T ss_dssp EEECTTCCE
T ss_pred EEeCCCCCc
Confidence 888877764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=4.2e-20 Score=198.66 Aligned_cols=266 Identities=16% Similarity=0.118 Sum_probs=199.8
Q ss_pred ccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-------cccccccCCcEEecCCCCCCccCCccccCCccCce
Q 039822 347 DNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMY 419 (711)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 419 (711)
.++++|++|++++|.. ..+| .++.+++|++|++ -.++.+++|++|++++|. +..+| ++++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l----~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI----TDMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCC----CCCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCc----ccCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 3789999999998743 3445 6899999999999 247889999999999987 88886 899999999
Q ss_pred eccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceE
Q 039822 420 LDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYL 499 (711)
Q Consensus 420 L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 499 (711)
|++++| .+..+| ++.+++|+.|++..+.... + .+..+++|+.|++++...+... .+..+++|+.|
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-----l-~l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L 175 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-----I-DVSHNTQLTELDCHLNKKITKL------DVTPQTQLTTL 175 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-----C-CCTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEE
T ss_pred EECCCC-cCCeec--CCCCCcCCEEECCCCccce-----e-ccccCCcCCEEECCCCCccccc------ccccCCcCCEE
Confidence 999999 677776 7788888888765443222 2 3778888999999876443332 36788999999
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC
Q 039822 500 RLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP 579 (711)
Q Consensus 500 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 579 (711)
+++.|.+...+ +..+++|+.|++++|.... . .+..+++|+.|++++| .++.+|
T Consensus 176 ~ls~n~l~~l~--------------------l~~l~~L~~L~l~~N~l~~--~---~l~~l~~L~~L~Ls~N-~l~~ip- 228 (457)
T 3bz5_A 176 DCSFNKITELD--------------------VSQNKLLNRLNCDTNNITK--L---DLNQNIQLTFLDCSSN-KLTEID- 228 (457)
T ss_dssp ECCSSCCCCCC--------------------CTTCTTCCEEECCSSCCSC--C---CCTTCTTCSEEECCSS-CCSCCC-
T ss_pred ECCCCccceec--------------------cccCCCCCEEECcCCcCCe--e---ccccCCCCCEEECcCC-cccccC-
Confidence 99998654431 5567899999999998877 3 2678999999999999 677787
Q ss_pred CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCc----------cceeecccCcccccccccCccccccccC
Q 039822 580 LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPK----------LKHLKFYDMEELEEWDYGTAIKGEIIIM 649 (711)
Q Consensus 580 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----------L~~L~l~~~~~L~~~~~~~~~~~~~~~l 649 (711)
++.+++|+.|+++++. ++.++. ..+++ |+.|++++|+.+..++. ..+
T Consensus 229 ~~~l~~L~~L~l~~N~-l~~~~~--------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--------~~l 285 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNP-LTELDV--------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--------EGC 285 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCCCC--------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--------TTC
T ss_pred ccccCCCCEEEeeCCc-CCCcCH--------------HHCCCCCEEeccCCCCCEEECCCCccCCcccc--------ccc
Confidence 8899999999999986 555432 23444 45555555554444443 378
Q ss_pred CcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 650 PRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 650 ~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
++|+.|++++|+.++.+|.. .++|+.+++++|+.++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQ---AAGITELDLSQNPKLV 321 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECT---TCCCSCCCCTTCTTCC
T ss_pred ccCCEEECCCCcccceeccC---CCcceEechhhcccCC
Confidence 99999999999887777642 3445555555555444
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=6.1e-20 Score=198.80 Aligned_cols=311 Identities=15% Similarity=0.116 Sum_probs=207.6
Q ss_pred EEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccccccCCcEEecC
Q 039822 331 LMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLCELYNLQRLDVT 399 (711)
Q Consensus 331 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~~L~~L~~L~l~ 399 (711)
+...+.....+|. . .++|++|++++|... ...|..|+++++|++|++ ..++++.+|++|+++
T Consensus 15 ~~c~~~~l~~lp~-l---~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 15 AICINRGLHQVPE-L---PAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp EECCSSCCSSCCC-C---CTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cCcCCCCcccCCC-C---CCccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 4444556666675 2 378999999987432 234788999999999998 347889999999999
Q ss_pred CCCCCccC-CccccCCccCceeccCCCCcccccccc--CCCccccCccCeeEecccCCCCcCcch-hhcCccCCCeeecC
Q 039822 400 YCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLSVG--IGELIRLRGVSRFVLGGGNDRACGLES-LKKLNLLRACSIYG 475 (711)
Q Consensus 400 ~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~--i~~l~~L~~L~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~ 475 (711)
+|. +..+ |..++++++|++|++++|.....+|.. +..+++|+.|++..+... ...+.. +..+++|+.|++++
T Consensus 88 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 88 YNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---KIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC---SCCCCGGGGGCTTCCEEECTT
T ss_pred CCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC---ccCcccccCCCCcccEEeCCC
Confidence 987 6554 888999999999999999433345554 788888888877655433 233333 78889999999987
Q ss_pred cCCCCChhhhhHhhhcCC--CCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcC
Q 039822 476 LGGVSDGGKAAKAELEKK--KYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVP 553 (711)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 553 (711)
..- .......+..+ .+|+.++++.+.+...+...+. ......+..+++|+.|++++|.... ..
T Consensus 164 n~l----~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------~~~~~~~~~~~~L~~L~Ls~n~l~~--~~ 228 (455)
T 3v47_A 164 NKV----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------WEKCGNPFKNTSITTLDLSGNGFKE--SM 228 (455)
T ss_dssp CCB----SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------HHHHCCTTTTCEEEEEECTTSCCCH--HH
T ss_pred Ccc----cccChhhhhccccccccccccccCcccccchhhcc---------ccccccccccceeeeEecCCCcccc--cc
Confidence 432 11112223332 5778888887766554321110 0111222333455555555544322 00
Q ss_pred cchh-------------------------------------h--cCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecc
Q 039822 554 RNWV-------------------------------------M--SLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCR 593 (711)
Q Consensus 554 ~~~~-------------------------------------~--~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~ 593 (711)
+.++ . ..++|+.|++++|.-....|. ++.+++|++|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 1111 1 236788888888843223343 78889999999988
Q ss_pred cccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC-CcCCCC
Q 039822 594 MESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL-PDHLLQ 672 (711)
Q Consensus 594 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~ 672 (711)
|. ++.++... +..+++|++|+++++ .++.++ +..+..+++|+.|++++| .++.+ |..+..
T Consensus 309 n~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 369 (455)
T 3v47_A 309 NE-INKIDDNA-----------FWGLTHLLKLNLSQN-FLGSID-----SRMFENLDKLEVLDLSYN-HIRALGDQSFLG 369 (455)
T ss_dssp SC-CCEECTTT-----------TTTCTTCCEEECCSS-CCCEEC-----GGGGTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred Cc-ccccChhH-----------hcCcccCCEEECCCC-ccCCcC-----hhHhcCcccCCEEECCCC-cccccChhhccc
Confidence 87 65554322 457899999999985 455553 234678999999999996 56665 667888
Q ss_pred CCCccEEEEecCcc
Q 039822 673 KTTLQRLDIHGCPI 686 (711)
Q Consensus 673 ~~~L~~l~l~~c~~ 686 (711)
+++|++|++++|.-
T Consensus 370 l~~L~~L~L~~N~l 383 (455)
T 3v47_A 370 LPNLKELALDTNQL 383 (455)
T ss_dssp CTTCCEEECCSSCC
T ss_pred cccccEEECCCCcc
Confidence 99999999999853
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=8.4e-20 Score=187.73 Aligned_cols=231 Identities=20% Similarity=0.165 Sum_probs=149.3
Q ss_pred ccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 390 LYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 390 L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
..++++|++++|. +..+|..+.++++|++|++++| .+..+|..++.+++|++|++..+... ..+..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR----ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC----CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc----cCcHHHhcCcCCC
Confidence 3567777777765 6677777777777777777777 45567766666666666655433221 1223333333333
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
.|+ ++.|......+..+.. ......+..+++|+.|++++|....
T Consensus 154 ~L~----------------------------L~~n~~~~~~p~~~~~--------~~~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 154 ELS----------------------------IRACPELTELPEPLAS--------TDASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp EEE----------------------------EEEETTCCCCCSCSEE--------EC-CCCEEESTTCCEEEEEEECCCC
T ss_pred EEE----------------------------CCCCCCccccChhHhh--------ccchhhhccCCCCCEEECcCCCcCc
Confidence 333 3333211110000000 0001123446778888888877765
Q ss_pred CCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecc
Q 039822 550 NVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
+ |.++..+++|+.|++++| .+..+|. ++.+++|++|++++|.....++.. +..+++|++|+++
T Consensus 198 --l-p~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 198 --L-PASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILK 261 (328)
T ss_dssp --C-CGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECT
T ss_pred --c-hHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECC
Confidence 5 667778888888888888 4555654 777888888888887755555443 3467888889888
Q ss_pred cCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecC
Q 039822 629 DMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGC 684 (711)
Q Consensus 629 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c 684 (711)
+|+.+..++.. +..+++|+.|++++|+.++.+|..+..+++|+.+++...
T Consensus 262 ~n~~~~~~p~~------~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 262 DCSNLLTLPLD------IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCBCCTT------GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhcchh------hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88777666543 778999999999999888999988888889988887743
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=6.6e-20 Score=205.00 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=216.3
Q ss_pred cCCcccEEEeccCCCCccccccch-hhhccCccCCcCc----------cccccccCCcEEecCCCCCCccCCc-cccCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQ-LFDKLTCLRALKL----------KTLCELYNLQRLDVTYCKNLEELPP-GIGKLR 415 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~ 415 (711)
.++++++|++.++ .+..+|. .++++++|++|+| ..++.+.+|++|+|++|. +..+|. .+++++
T Consensus 49 ~l~~l~~l~l~~~----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCC----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCC
Confidence 5789999999976 3445655 4789999999999 368899999999999987 777765 469999
Q ss_pred cCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCC
Q 039822 416 KLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKK 494 (711)
Q Consensus 416 ~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 494 (711)
+|++|++++| .+..+|.. ++.+++|+.|++..+... ...+..+..+++|+.|++++..- .. ..+..++
T Consensus 124 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l-~~------~~~~~l~ 192 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRL-TH------VDLSLIP 192 (597)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---BCCTTTTTTCTTCCEEECTTSCC-SB------CCGGGCT
T ss_pred CCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCC---CCChhhhhcCCcCcEEECcCCCC-CC------cChhhhh
Confidence 9999999999 78888877 488999998877654332 34456688899999999987432 11 1255678
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCC
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNC 574 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 574 (711)
+|+.|+++.|.+ ..+..+++|+.|++++|.... + +.. ..++|+.|++++| .+
T Consensus 193 ~L~~L~l~~n~l----------------------~~l~~~~~L~~L~ls~n~l~~--~-~~~--~~~~L~~L~L~~n-~l 244 (597)
T 3oja_B 193 SLFHANVSYNLL----------------------STLAIPIAVEELDASHNSINV--V-RGP--VNVELTILKLQHN-NL 244 (597)
T ss_dssp TCSEEECCSSCC----------------------SEEECCTTCSEEECCSSCCCE--E-ECS--CCSCCCEEECCSS-CC
T ss_pred hhhhhhcccCcc----------------------ccccCCchhheeeccCCcccc--c-ccc--cCCCCCEEECCCC-CC
Confidence 999999988743 234456789999999998776 4 332 2478999999999 67
Q ss_pred CCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccE
Q 039822 575 EHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSF 654 (711)
Q Consensus 575 ~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~ 654 (711)
+..+.++.+++|+.|++++|. +..+.... +..+++|+.|++++ +.++.++.. ...+|+|+.
T Consensus 245 ~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~-N~l~~l~~~------~~~l~~L~~ 305 (597)
T 3oja_B 245 TDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISN-NRLVALNLY------GQPIPTLKV 305 (597)
T ss_dssp CCCGGGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECTT-SCCCEEECS------SSCCTTCCE
T ss_pred CCChhhccCCCCCEEECCCCc-cCCCCHHH-----------hcCccCCCEEECCC-CCCCCCCcc------cccCCCCcE
Confidence 777779999999999999987 55553322 45789999999998 467766544 567999999
Q ss_pred EeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 655 LEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 655 L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 306 L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 306 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 999995 6889998777899999999999974
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.5e-19 Score=203.08 Aligned_cols=242 Identities=21% Similarity=0.131 Sum_probs=154.4
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+.++++|++|++++|... ...|..++++++|++|++ ..++++.+|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 57999999999999888877779999999999987432 234778899999999998 24788899999
Q ss_pred EecCCCCCCccCC-ccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhh--cCccCCCee
Q 039822 396 LDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLK--KLNLLRACS 472 (711)
Q Consensus 396 L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~--~l~~L~~L~ 472 (711)
|++++|. +..+| ..++++++|++|++++|......|..++.+++|+.|++..+... ......+. .++.|+.|+
T Consensus 102 L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 102 LHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp EECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC---CBCHHHHGGGTTCEESEEE
T ss_pred EECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc---ccCHHHhhccccccccEEE
Confidence 9999886 77776 56889999999999998443444556778888888766543322 22233332 346777888
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV 552 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 552 (711)
+++.. ........+..+.+|+.+.+..+.+. ......+...+ ..++|+.|+++++.... .
T Consensus 178 L~~n~----l~~~~~~~~~~l~~L~~L~l~~~~l~-------------~~~~~~~~~~l-~~~~L~~L~L~~n~l~~--~ 237 (680)
T 1ziw_A 178 LSSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLG-------------PSLTEKLCLEL-ANTSIRNLSLSNSQLST--T 237 (680)
T ss_dssp CTTCC----CCCBCTTGGGGSSEECEEECTTCCCH-------------HHHHHHHHHHH-TTSCCCEEECTTSCCCE--E
T ss_pred CCCCc----ccccChhhhhhhhhhhhhhccccccC-------------hhhHHHHHHHh-hhccccEEEccCCcccc--c
Confidence 77632 11222334555666666655443211 01111122222 23566666666666555 3
Q ss_pred CcchhhcCcC--ccEEeEeCCCCCCCCC--CCCCCCCCCeeeecccc
Q 039822 553 PRNWVMSLTN--LRALVLKNCRNCEHLP--PLGKLPSLEDLEVCRME 595 (711)
Q Consensus 553 ~~~~~~~l~~--L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~ 595 (711)
.+.++..++. |+.|++++| .++.++ .++.+++|++|+++++.
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCc
Confidence 3555554433 666666666 333332 25566666666666654
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=6.1e-19 Score=201.07 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=192.9
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCcc-------------------cc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLK-------------------TL 387 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~-------------------~i 387 (711)
.++.|+++++.+..++...+..+++|++|++.+|... ...|..++++++|++|++. .+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ---HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS---EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccC---ccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 4888888888888777666668899999999886432 2346678888888888872 45
Q ss_pred ccccCCcEEecCCCCCCccC-CccccCCccCceeccCCCCc-ccccccc-CCCc--cccCccCeeEecccCCCCcCcchh
Q 039822 388 CELYNLQRLDVTYCKNLEEL-PPGIGKLRKLMYLDNRWTHS-LRFLSVG-IGEL--IRLRGVSRFVLGGGNDRACGLESL 462 (711)
Q Consensus 388 ~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~-l~~lp~~-i~~l--~~L~~L~~~~~~~~~~~~~~~~~L 462 (711)
+.+++|++|++++|. +..+ |..+.++++|++|++++|.. +..+|.. +..+ ++|+.|++ +.+......+..+
T Consensus 326 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L---~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 326 QWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL---TKNKISKIESDAF 401 (680)
T ss_dssp TTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC---TTSCCCEECTTTT
T ss_pred ccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC---CCCCCCeEChhhh
Confidence 678889999998876 6555 45578888888888888731 3333322 1111 24444433 3333223334556
Q ss_pred hcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCccccc---------CCCCchhhHHHHhhccCC
Q 039822 463 KKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAG---------RRENEEDEDERLLDALGP 533 (711)
Q Consensus 463 ~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 533 (711)
..+++|+.|++++..-. +......+.++++|+.|+++.|.+.......+. ............+..+..
T Consensus 402 ~~l~~L~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIG---QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTCTTCCEEECCSSCCE---EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hCCCCCCEEeCCCCcCc---cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 66667777776653210 011123456666777777766643222110000 000000000112334555
Q ss_pred CCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCC----------CCCCCCCCCCeeeecccccceEeccc
Q 039822 534 PPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHL----------PPLGKLPSLEDLEVCRMESVKRVGHE 603 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l----------~~~~~l~~L~~L~l~~~~~l~~l~~~ 603 (711)
+++|+.|++++|.... .++..+..+++|+.|+++++. ++.+ ..+..+++|+.|+++++. ++.++..
T Consensus 479 l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~ 554 (680)
T 1ziw_A 479 LRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVE 554 (680)
T ss_dssp CTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCCCEEECCCCCCCc--CChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHH
Confidence 6666666666666555 435556666666666666662 3222 114556666666666654 4444432
Q ss_pred cccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CC-CCCCccEEEE
Q 039822 604 FLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LL-QKTTLQRLDI 681 (711)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~-~~~~L~~l~l 681 (711)
. +..+++|+.|++++ ++++.++.. .+..+++|+.|++++| +++.++.. +. .+++|+.+++
T Consensus 555 ~-----------~~~l~~L~~L~Ls~-N~l~~l~~~-----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 555 V-----------FKDLFELKIIDLGL-NNLNTLPAS-----VFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp T-----------TTTCTTCCEEECCS-SCCCCCCTT-----TTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEEC
T ss_pred H-----------cccccCcceeECCC-CCCCcCCHh-----HhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEc
Confidence 2 34567777777766 456655432 3456788888888884 67777653 22 4678888888
Q ss_pred ecCcch
Q 039822 682 HGCPIF 687 (711)
Q Consensus 682 ~~c~~l 687 (711)
++||..
T Consensus 617 ~~N~~~ 622 (680)
T 1ziw_A 617 RFNPFD 622 (680)
T ss_dssp TTCCCC
T ss_pred cCCCcc
Confidence 887763
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=6e-20 Score=203.93 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=123.9
Q ss_pred EEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcEEecCCC
Q 039822 332 MLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQRLDVTYC 401 (711)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~~ 401 (711)
+..++.+..+|...+ +.|++|++++|... ...|..|+++++|++|++ ..++++.+|++|++++|
T Consensus 11 ~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT---AAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp ECTTSCCSSCCSCCC---TTCCEEECCSSCCC---EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ECCCCccccccccCC---CCccEEECcCCccC---ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 334456677787654 78999999987432 223678999999999999 45889999999999998
Q ss_pred CCCccCCcc-ccCCccCceeccCCCCcccc--ccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCC
Q 039822 402 KNLEELPPG-IGKLRKLMYLDNRWTHSLRF--LSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGG 478 (711)
Q Consensus 402 ~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 478 (711)
. +..+|.. ++++++|++|++++| .+.. .|..++.+++|+.|++..+.... ......+..+++|+.|++++..
T Consensus 85 ~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~- 159 (549)
T 2z81_A 85 H-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELEIKALS- 159 (549)
T ss_dssp C-CCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETT-
T ss_pred c-cCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCcccc--ccCHhhhhcccccCeeeccCCc-
Confidence 7 8887765 999999999999999 5553 46788999999999887664222 2233567888999999998743
Q ss_pred CCChhhhhHhhhcCCCCCceEEEEeecCC
Q 039822 479 VSDGGKAAKAELEKKKYLFYLRLRFDDLR 507 (711)
Q Consensus 479 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 507 (711)
........+..+++|+.|+++.+.+.
T Consensus 160 ---l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 160 ---LRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp ---CCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ---ccccChhhhhccccCceEecccCccc
Confidence 22334566788899999999988643
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=203.29 Aligned_cols=317 Identities=16% Similarity=0.121 Sum_probs=211.1
Q ss_pred EEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccccccCCcEEe
Q 039822 329 LHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLCELYNLQRLD 397 (711)
Q Consensus 329 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~~L~~L~~L~ 397 (711)
+.++-+++....+|. -.+++++|++++|... ...|..|+++++|++|+| ..++++.+|++|+
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 345555667777776 2489999999987432 234778999999999999 3478899999999
Q ss_pred cCCCCCCccC-CccccCCccCceeccCCCCcccccccc--CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeec
Q 039822 398 VTYCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLSVG--IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIY 474 (711)
Q Consensus 398 l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~--i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 474 (711)
|++|. +..+ |..+++|++|++|++++|.....+|.. +..+++|+.|++..+.... ......+.++++|+.|+++
T Consensus 80 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 80 LGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGTCSSCCEEEEE
T ss_pred CCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhHhhCCCCCEEECC
Confidence 99987 6655 889999999999999999444446655 8899999999877655443 1223578899999999998
Q ss_pred CcCCCCChhhhhHhhhcCC--CCCceEEEEeecCCCCCcc---------------cccCCCCc--hhhHHHHh-------
Q 039822 475 GLGGVSDGGKAAKAELEKK--KYLFYLRLRFDDLRDGDEE---------------QAGRRENE--EDEDERLL------- 528 (711)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~~~~---------------~~~~~~~~--~~~~~~~~------- 528 (711)
+..- .. .....+..+ ++|+.|+++.|.+...... .+...... ......+.
T Consensus 157 ~N~i-~~---~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 157 SNQI-FL---VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp SSCC-CC---CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CCcC-Ce---eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 7432 11 111222222 6788888887765443211 11111110 00000000
Q ss_pred -------------------------hccCC--CCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC--C
Q 039822 529 -------------------------DALGP--PPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP--P 579 (711)
Q Consensus 529 -------------------------~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~ 579 (711)
..+.. +++|+.|++++|.... .++..+..+++|+.|++++| .+..++ .
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~ 309 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYN-KINKIADEA 309 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESC-CCCEECTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCC-cCCCCChHH
Confidence 01111 2578888888877766 44667778888888888887 444443 3
Q ss_pred CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecC
Q 039822 580 LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGG 659 (711)
Q Consensus 580 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 659 (711)
+..+++|++|++++|. ++.+... .+..+++|++|+++++ .+..++ +..+..+++|+.|++++
T Consensus 310 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNL-LGELYSS-----------NFYGLPKVAYIDLQKN-HIAIIQ-----DQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp TTTCSSCCEEEEESCC-CSCCCSC-----------SCSSCTTCCEEECCSC-CCCCCC-----SSCSCSCCCCCEEEEET
T ss_pred hcCCCCCCEEECCCCC-CCccCHH-----------HhcCCCCCCEEECCCC-CCCccC-----hhhhcCCCCCCEEECCC
Confidence 7778888888888775 4433221 2446788888888875 455443 23466788899999988
Q ss_pred CCCCcCCCcCCCCCCCccEEEEecCc
Q 039822 660 CRKLKALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 660 c~~l~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
| .++.++. +++|+.+++++|.
T Consensus 372 N-~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 372 N-ALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp C-CSCCCSS----CCSCSEEEEESCC
T ss_pred C-CCCcccC----CCCcchhccCCCC
Confidence 4 6776653 6778888888774
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=3.7e-19 Score=182.96 Aligned_cols=235 Identities=20% Similarity=0.241 Sum_probs=168.3
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..++.|++.++.+..+|..+. .+++|++|++.+|.+ ..+|. .++++.+|++|++++|. +.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~l----~~lp~--------------~~~~l~~L~~L~Ls~n~-l~ 140 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGL----MELPD--------------TMQQFAGLETLTLARNP-LR 140 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSCC----CCCCS--------------CGGGGTTCSEEEEESCC-CC
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCCCc----cchhH--------------HHhccCCCCEEECCCCc-cc
Confidence 357777777777777776665 577777777776532 23443 34566777777777765 66
Q ss_pred cCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 406 ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
.+|..+++|++|++|++++|+.+..+|..+.... ..
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~------------------~~-------------------------- 176 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTD------------------AS-------------------------- 176 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-------------------C--------------------------
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc------------------ch--------------------------
Confidence 7777777888888888877766666665442200 00
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccE
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRA 565 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 565 (711)
..+.++++|+.|+++.|.+... +..+..+++|+.|+|++|.... + |..+..+++|+.
T Consensus 177 --~~~~~l~~L~~L~L~~n~l~~l------------------p~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~ 233 (328)
T 4fcg_A 177 --GEHQGLVNLQSLRLEWTGIRSL------------------PASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEE 233 (328)
T ss_dssp --CCEEESTTCCEEEEEEECCCCC------------------CGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCE
T ss_pred --hhhccCCCCCEEECcCCCcCcc------------------hHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCE
Confidence 1134556777777777765533 3456678899999999998887 6 567888999999
Q ss_pred EeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcccc
Q 039822 566 LVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKG 644 (711)
Q Consensus 566 L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 644 (711)
|++++|.....+|. ++.+++|+.|++++|.....++.. +..+++|++|++++|+.+..+|..
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------~~~l~~L~~L~L~~n~~~~~iP~~----- 296 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------IHRLTQLEKLDLRGCVNLSRLPSL----- 296 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT------------GGGCTTCCEEECTTCTTCCCCCGG-----
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh------------hhcCCCCCEEeCCCCCchhhccHH-----
Confidence 99999977777776 888999999999998877766654 347889999999999888777654
Q ss_pred ccccCCcccEEeecCCCCCcCC
Q 039822 645 EIIIMPRLSFLEIGGCRKLKAL 666 (711)
Q Consensus 645 ~~~~l~~L~~L~l~~c~~l~~l 666 (711)
+..+++|+.+.+.. ..+..+
T Consensus 297 -l~~L~~L~~l~l~~-~~~~~l 316 (328)
T 4fcg_A 297 -IAQLPANCIILVPP-HLQAQL 316 (328)
T ss_dssp -GGGSCTTCEEECCG-GGSCC-
T ss_pred -HhhccCceEEeCCH-HHHHHH
Confidence 88999999998876 334433
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=201.59 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=145.2
Q ss_pred cCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhc
Q 039822 412 GKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELE 491 (711)
Q Consensus 412 ~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~ 491 (711)
.++++|+.|++++| .+..+|..+..+ +|+.|++..+.... +.. ..+++|+.|.+.+...... ....
T Consensus 279 ~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~~-----l~~-~~l~~L~~L~l~~n~~~~~------~~~~ 344 (570)
T 2z63_A 279 NCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFGQ-----FPT-LKLKSLKRLTFTSNKGGNA------FSEV 344 (570)
T ss_dssp GGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCSS-----CCB-CBCSSCCEEEEESCBSCCB------CCCC
T ss_pred cCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCcccc-----cCc-ccccccCEEeCcCCccccc------cccc
Confidence 33455555555555 344455555444 55555443332221 111 3456666666665432111 0115
Q ss_pred CCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCC
Q 039822 492 KKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNC 571 (711)
Q Consensus 492 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 571 (711)
.+++|+.|+++.|.+..... .+..+..+++|+.|++++|.... . +..+..+++|+.|++++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~---------------~~~~~~~~~~L~~L~l~~n~l~~--~-~~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC---------------CSQSDFGTTSLKYLDLSFNGVIT--M-SSNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE---------------EEHHHHTCSCCCEEECCSCSEEE--E-EEEEETCTTCCEEECTTS
T ss_pred cCCCCCEEeCcCCccCcccc---------------ccccccccCccCEEECCCCcccc--c-cccccccCCCCEEEccCC
Confidence 78899999998885433210 12345568899999999998777 5 444788999999999998
Q ss_pred CCCCCC-C--CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccc--cccccCcccccc
Q 039822 572 RNCEHL-P--PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELE--EWDYGTAIKGEI 646 (711)
Q Consensus 572 ~~l~~l-~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~--~~~~~~~~~~~~ 646 (711)
. +... + .+..+++|++|++++|. +...... .+..+++|++|++++|. ++ .++ ..+
T Consensus 407 ~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-----------~~~~l~~L~~L~l~~n~-l~~~~~p------~~~ 466 (570)
T 2z63_A 407 N-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-----------IFNGLSSLEVLKMAGNS-FQENFLP------DIF 466 (570)
T ss_dssp E-EESCTTSCTTTTCTTCCEEECTTSC-CEECCTT-----------TTTTCTTCCEEECTTCE-EGGGEEC------SCC
T ss_pred c-cccccchhhhhcCCCCCEEeCcCCc-ccccchh-----------hhhcCCcCcEEECcCCc-Cccccch------hhh
Confidence 5 3333 3 47889999999999987 4443322 14578999999999975 33 233 347
Q ss_pred ccCCcccEEeecCCCCCcCC-CcCCCCCCCccEEEEecCc
Q 039822 647 IIMPRLSFLEIGGCRKLKAL-PDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 647 ~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~L~~l~l~~c~ 685 (711)
..+++|+.|++++| .++.+ |..+..+++|++|++++|.
T Consensus 467 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 467 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc
Confidence 78999999999997 46555 6678889999999999984
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=6.8e-19 Score=181.83 Aligned_cols=291 Identities=14% Similarity=0.075 Sum_probs=141.8
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
.++.+.+.++.+..+|.... ++|++|++.+|. +..+ |..| +++.+|++|++++|. +.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~----i~~~~~~~~--------------~~l~~L~~L~L~~n~-l~ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNND----ISELRKDDF--------------KGLQHLYALVLVNNK-IS 91 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---TTCCEEECCSSC----CCEECTTTT--------------TTCTTCCEEECCSSC-CC
T ss_pred cCCEEECCCCCccccCCCCC---CCCeEEECCCCc----CCccCHhHh--------------hCCCCCcEEECCCCc-cC
Confidence 45666666666666665543 567777777653 2223 3334 444555555555544 44
Q ss_pred cC-CccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhh
Q 039822 406 EL-PPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGK 484 (711)
Q Consensus 406 ~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 484 (711)
.+ |..++++++|++|++++| .+..+|..+. ++|++|++..+... ......+..+++|+.|++.+..- .. ..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l-~~-~~ 163 (332)
T 2ft3_A 92 KIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIR---KVPKGVFSGLRNMNCIEMGGNPL-EN-SG 163 (332)
T ss_dssp EECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCC---CCCSGGGSSCSSCCEEECCSCCC-BG-GG
T ss_pred ccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCCccC---ccCHhHhCCCccCCEEECCCCcc-cc-CC
Confidence 33 444555555555555555 4445554443 34444433222111 11222344444444444443211 00 00
Q ss_pred hhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCcc
Q 039822 485 AAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLR 564 (711)
Q Consensus 485 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 564 (711)
.....+..+ +|+.|+++.|.+...+. .+ .++|+.|++++|.... .++..+..+++|+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~------------------~~--~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPK------------------DL--PETLNELHLDHNKIQA--IELEDLLRYSKLY 220 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCS------------------SS--CSSCSCCBCCSSCCCC--CCTTSSTTCTTCS
T ss_pred CCcccccCC-ccCEEECcCCCCCccCc------------------cc--cCCCCEEECCCCcCCc--cCHHHhcCCCCCC
Confidence 111223333 55555555554333221 11 1466666666666655 4345566666677
Q ss_pred EEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcc
Q 039822 565 ALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAI 642 (711)
Q Consensus 565 ~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 642 (711)
.|++++| .++.++. +..+++|++|++++|. ++.++.. +..+++|++|++++ +.++.++.....
T Consensus 221 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~-N~l~~~~~~~~~ 285 (332)
T 2ft3_A 221 RLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVYLHT-NNITKVGVNDFC 285 (332)
T ss_dssp CCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEECCS-SCCCBCCTTSSS
T ss_pred EEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEECCC-CCCCccChhHcc
Confidence 7777666 4444442 5566667777776664 5444432 23566677777766 345554432111
Q ss_pred ccc-cccCCcccEEeecCCCCC--cCCCcCCCCCCCccEEEEecCc
Q 039822 643 KGE-IIIMPRLSFLEIGGCRKL--KALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 643 ~~~-~~~l~~L~~L~l~~c~~l--~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
+.. ...+++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 110 012466777777775432 2233345556777777776664
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=6.6e-19 Score=181.79 Aligned_cols=292 Identities=14% Similarity=0.085 Sum_probs=171.1
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCcc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEE 406 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~ 406 (711)
.++.+.+.++....+|.... +.+++|++++|. +..++. ..++++++|++|++++|. +..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n~----i~~~~~-------------~~~~~l~~L~~L~L~~n~-l~~ 90 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK----ITEIKD-------------GDFKNLKNLHTLILINNK-ISK 90 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---TTCCEEECCSSC----CCCBCT-------------TTTTTCTTCCEEECCSSC-CCC
T ss_pred CCeEEEecCCCccccCccCC---CCCeEEECCCCc----CCEeCh-------------hhhccCCCCCEEECCCCc-CCe
Confidence 34555555555555554432 566777777653 222222 234556666667776665 554
Q ss_pred C-CccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 407 L-PPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 407 l-P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
+ |..+.++++|++|++++| .+..+|..+. ++|+.|++..+ .........+..+++|+.|++++..- . ....
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l-~-~~~~ 162 (330)
T 1xku_A 91 ISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN---EITKVRKSVFNGLNQMIVVELGTNPL-K-SSGI 162 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS---CCCBBCHHHHTTCTTCCEEECCSSCC-C-GGGB
T ss_pred eCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC---cccccCHhHhcCCccccEEECCCCcC-C-ccCc
Confidence 4 566667777777777666 4566665543 45555544322 22223334456666777776665321 1 0112
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccE
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRA 565 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 565 (711)
....+..+++|+.|+++.+.+...+. .+ .++|+.|++++|.... .++..+..+++|+.
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~------------------~~--~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQ------------------GL--PPSLTELHLDGNKITK--VDAASLKGLNNLAK 220 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCS------------------SC--CTTCSEEECTTSCCCE--ECTGGGTTCTTCCE
T ss_pred ChhhccCCCCcCEEECCCCccccCCc------------------cc--cccCCEEECCCCcCCc--cCHHHhcCCCCCCE
Confidence 23456677788888887775543321 11 2678888888887766 44667778888888
Q ss_pred EeEeCCCCCCCCC--CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccc
Q 039822 566 LVLKNCRNCEHLP--PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIK 643 (711)
Q Consensus 566 L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 643 (711)
|++++| .++.++ .+..+++|++|++++|. ++.++.. +..+++|++|+++++ .++.++.....+
T Consensus 221 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N-~i~~~~~~~f~~ 285 (330)
T 1xku_A 221 LGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVYLHNN-NISAIGSNDFCP 285 (330)
T ss_dssp EECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEECCSS-CCCCCCTTSSSC
T ss_pred EECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCEEECCCC-cCCccChhhcCC
Confidence 888887 455444 36677888888888875 5555442 346778888888874 466555432111
Q ss_pred c-ccccCCcccEEeecCCCCCc--CCCcCCCCCCCccEEEEecC
Q 039822 644 G-EIIIMPRLSFLEIGGCRKLK--ALPDHLLQKTTLQRLDIHGC 684 (711)
Q Consensus 644 ~-~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~L~~l~l~~c 684 (711)
. .....++|+.|++.+++... ..|..+..+.+|+.++++++
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1 11235778888888855321 22345666788888888776
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=5.1e-19 Score=182.78 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=170.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCccccccccCCcEEecCCCCCC
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNL 404 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l 404 (711)
..++.|++.++.+..++...+..+++|++|++.+|.. ..+ |..|+++++ |++|++++|. +
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~--------------L~~L~L~~n~-l 114 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI----SKIHEKAFSPLRK--------------LQKLYISKNH-L 114 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC----CEECGGGSTTCTT--------------CCEEECCSSC-C
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc----CccCHhHhhCcCC--------------CCEEECCCCc-C
Confidence 5799999999999988777777999999999998743 233 555555544 4555555443 4
Q ss_pred ccCCccccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChh
Q 039822 405 EELPPGIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGG 483 (711)
Q Consensus 405 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 483 (711)
..+|..+. ++|++|++++| .+..+|.. +..+++|+.|++..+.... .......+..+ +|+.|++++..- ...
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-~L~~L~l~~n~l-~~l- 187 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-KLNYLRISEAKL-TGI- 187 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC-CCSCCBCCSSBC-SSC-
T ss_pred CccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC-ccCEEECcCCCC-Ccc-
Confidence 44444433 45555555554 33444432 4444444444433222110 01122223333 455555544211 110
Q ss_pred hhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCc
Q 039822 484 KAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNL 563 (711)
Q Consensus 484 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 563 (711)
...+ .++|+.|++++|.+...+ +..+..+++|+.|++++|.... .++.++..+++|
T Consensus 188 ---~~~~--~~~L~~L~l~~n~i~~~~-----------------~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L 243 (332)
T 2ft3_A 188 ---PKDL--PETLNELHLDHNKIQAIE-----------------LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTL 243 (332)
T ss_dssp ---CSSS--CSSCSCCBCCSSCCCCCC-----------------TTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTC
T ss_pred ---Cccc--cCCCCEEECCCCcCCccC-----------------HHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCC
Confidence 0011 156777777777655443 3467778999999999998887 646688899999
Q ss_pred cEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcc
Q 039822 564 RALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAI 642 (711)
Q Consensus 564 ~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 642 (711)
+.|++++| .++.+|. +..+++|+.|+++++. ++.++...+.... ....+++|+.|++++++ +..+...
T Consensus 244 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N~-~~~~~~~--- 312 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----FGVKRAYYNGISLFNNP-VPYWEVQ--- 312 (332)
T ss_dssp CEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----CCSSSCCBSEEECCSSS-SCGGGSC---
T ss_pred CEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccccc-----cccccccccceEeecCc-ccccccC---
Confidence 99999999 6778876 8889999999999987 7777665443211 01236889999999865 4433222
Q ss_pred ccccccCCcccEEeecCCC
Q 039822 643 KGEIIIMPRLSFLEIGGCR 661 (711)
Q Consensus 643 ~~~~~~l~~L~~L~l~~c~ 661 (711)
+..+..+++|+.|++.++.
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 4557789999999998864
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1.6e-18 Score=196.13 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=103.5
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCC-CCC-CCCCCCCCeeeecccccceEeccccccC
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEH-LPP-LGKLPSLEDLEVCRMESVKRVGHEFLGV 607 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 607 (711)
.+..+++++.++++.+.... ..+..+..+++|+.|+++++..... .|. +..+++|++|++++|. ++.++...
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~--- 513 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA--- 513 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT---
T ss_pred cccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH---
Confidence 45567788888888887766 4466777889999999998864444 333 7889999999999986 77775432
Q ss_pred CCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCC-CCccEEEEecCc
Q 039822 608 ESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQK-TTLQRLDIHGCP 685 (711)
Q Consensus 608 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~-~~L~~l~l~~c~ 685 (711)
+..+++|++|+++++ +++.++. ..+..+++|+.|+++++ +++.++. .+..+ ++|+.|+++++|
T Consensus 514 --------f~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 514 --------FNSLSSLQVLNMSHN-NFFSLDT-----FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp --------TTTCTTCCEEECTTS-CCCBCCC-----GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred --------HcCCCCCCEEECCCC-cCCCCCh-----hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 447899999999984 5766643 34678999999999994 6777654 56665 689999998766
Q ss_pred c
Q 039822 686 I 686 (711)
Q Consensus 686 ~ 686 (711)
.
T Consensus 579 ~ 579 (635)
T 4g8a_A 579 F 579 (635)
T ss_dssp B
T ss_pred C
Confidence 4
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=8.9e-19 Score=178.98 Aligned_cols=239 Identities=20% Similarity=0.164 Sum_probs=143.6
Q ss_pred CcEEEEEEEecCCCc---ccccccccCCcccEEEecc-CCCCccccccchhhhccCccCCcCc----------ccccccc
Q 039822 326 KKILHLMLTLYSGAL---VPISIWDNVKGLRSLLVDC-DEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELY 391 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~ 391 (711)
.+++.|++.++.+.. +|..+. .+++|++|++.+ |. ....+|..++++++|++|++ ..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 479999999998874 665554 899999999995 53 22356888888888888888 3477788
Q ss_pred CCcEEecCCCCCCc-cCCccccCCccCceeccCCCCccccccccCCCcc-ccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 392 NLQRLDVTYCKNLE-ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELI-RLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 392 ~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
+|++|++++|. +. .+|..+.++++|++|++++|.....+|..++.++ +|+.|++..+... ...+..+..++ |+
T Consensus 126 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 126 TLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLN-LA 200 (313)
T ss_dssp TCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCC-CS
T ss_pred CCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCCc-cc
Confidence 88888888876 55 6788888888888888888843336777777776 7776665433221 12333444444 55
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
.|++++ |.+... .+..+..+++|+.|++++|....
T Consensus 201 ~L~Ls~----------------------------N~l~~~-----------------~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 201 FVDLSR----------------------------NMLEGD-----------------ASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp EEECCS----------------------------SEEEEC-----------------CGGGCCTTSCCSEEECCSSEECC
T ss_pred EEECcC----------------------------CcccCc-----------------CCHHHhcCCCCCEEECCCCceee
Confidence 555543 322111 12334445555555555555443
Q ss_pred CCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecc
Q 039822 550 NVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
. +..+..+++|+.|++++|.-...+|. +..+++|++|+++++.-...+|. ...+++|+.|+++
T Consensus 236 --~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 236 --D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYA 299 (313)
T ss_dssp --B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTC
T ss_pred --e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhc
Confidence 2 22244555566666655532223333 55555666666655542112222 1245566666666
Q ss_pred cCcccc
Q 039822 629 DMEELE 634 (711)
Q Consensus 629 ~~~~L~ 634 (711)
+++.+.
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 655444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=7.4e-18 Score=173.94 Aligned_cols=263 Identities=14% Similarity=0.125 Sum_probs=194.0
Q ss_pred cccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCc-cccCCccCceeccCCCCccc
Q 039822 351 GLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPP-GIGKLRKLMYLDNRWTHSLR 429 (711)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~ 429 (711)
+++++++.++ .+..+|..+ .++|++|++++|. +..+|. .++++++|++|++++| .+.
T Consensus 32 ~l~~l~~~~~----~l~~lp~~~----------------~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~ 89 (330)
T 1xku_A 32 HLRVVQCSDL----GLEKVPKDL----------------PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-KIS 89 (330)
T ss_dssp ETTEEECTTS----CCCSCCCSC----------------CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCeEEEecCC----CccccCccC----------------CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-cCC
Confidence 6788887754 233444321 2578999999986 888775 6899999999999999 555
Q ss_pred cc-cccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCC
Q 039822 430 FL-SVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRD 508 (711)
Q Consensus 430 ~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 508 (711)
.+ |..+..+++|+.|++..+.... .+..+ .++|+.|.+++.. ........+..+++|+.|+++.|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~----l~~~~--~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKE----LPEKM--PKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSB----CCSSC--CTTCCEEECCSSC----CCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCc----cChhh--cccccEEECCCCc----ccccCHhHhcCCccccEEECCCCcCCc
Confidence 55 7789999999999876554332 12222 2678888888642 223445568899999999999886543
Q ss_pred CCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCC--CCCCCCCC
Q 039822 509 GDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLP--PLGKLPSL 586 (711)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~l~~L 586 (711)
.+. .+..+..+++|+.|+++++.... + |..+ +++|+.|++++| .++.++ .+..+++|
T Consensus 160 ~~~---------------~~~~~~~l~~L~~L~l~~n~l~~--l-~~~~--~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 160 SGI---------------ENGAFQGMKKLSYIRIADTNITT--I-PQGL--PPSLTELHLDGN-KITKVDAASLKGLNNL 218 (330)
T ss_dssp GGB---------------CTTGGGGCTTCCEEECCSSCCCS--C-CSSC--CTTCSEEECTTS-CCCEECTGGGTTCTTC
T ss_pred cCc---------------ChhhccCCCCcCEEECCCCcccc--C-Cccc--cccCCEEECCCC-cCCccCHHHhcCCCCC
Confidence 211 13456778999999999998877 6 4443 389999999999 465553 38889999
Q ss_pred CeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC
Q 039822 587 EDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL 666 (711)
Q Consensus 587 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 666 (711)
+.|+++++. ++.++... +..+++|++|+++++ .++.++.. +..+++|+.|++++| .++.+
T Consensus 219 ~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~lp~~------l~~l~~L~~L~l~~N-~i~~~ 278 (330)
T 1xku_A 219 AKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNN-KLVKVPGG------LADHKYIQVVYLHNN-NISAI 278 (330)
T ss_dssp CEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSS-CCSSCCTT------TTTCSSCCEEECCSS-CCCCC
T ss_pred CEEECCCCc-CceeChhh-----------ccCCCCCCEEECCCC-cCccCChh------hccCCCcCEEECCCC-cCCcc
Confidence 999999987 66665422 447899999999996 57666543 778999999999995 78888
Q ss_pred CcC-CC------CCCCccEEEEecCcc
Q 039822 667 PDH-LL------QKTTLQRLDIHGCPI 686 (711)
Q Consensus 667 p~~-~~------~~~~L~~l~l~~c~~ 686 (711)
|.. +. ..+.|+.++++++|.
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ChhhcCCcccccccccccceEeecCcc
Confidence 753 21 247899999999986
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=184.02 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=68.8
Q ss_pred HhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccc
Q 039822 527 LLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFL 605 (711)
Q Consensus 527 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~ 605 (711)
++..+..+++|+.|++++|..... ++...+..+++|+.|++++|.-...+|. +. ++|+.|++++|. ++.++..
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~-- 439 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQ-- 439 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGG--
T ss_pred chHHHhhCCCCCEEECCCCcCCcc-cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchh--
Confidence 344455566666666666655442 2122344556666666666632122221 11 566666666664 5544443
Q ss_pred cCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCC
Q 039822 606 GVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRK 662 (711)
Q Consensus 606 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 662 (711)
+..+++|++|+++++ .++.++.. .+..+++|+.|++++++-
T Consensus 440 ----------~~~l~~L~~L~L~~N-~l~~l~~~-----~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 440 ----------VVKLEALQELNVASN-QLKSVPDG-----IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ----------GGGCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSSCB
T ss_pred ----------hhcCCCCCEEECCCC-cCCccCHH-----HhccCCcccEEECcCCCC
Confidence 347899999999995 67766532 366899999999999653
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=174.50 Aligned_cols=263 Identities=18% Similarity=0.218 Sum_probs=127.1
Q ss_pred EEEEecCCCcccccccccCCcccEEEeccCCCCccccccch-hhhccCccCCcCc----------cccccccCCcEEecC
Q 039822 331 LMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQ-LFDKLTCLRALKL----------KTLCELYNLQRLDVT 399 (711)
Q Consensus 331 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~ 399 (711)
.+.+++.+..+|.... ++|++|++++|. +..+|. .+.++++|++|++ ..++++.+|++|+++
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred eeCCCCCccccccccc---ccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 4455566666776544 577888887763 223333 3444444444443 124444555555555
Q ss_pred CCCCCccCCcc-ccCCccCceeccCCCCccccccc--cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCc
Q 039822 400 YCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSV--GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGL 476 (711)
Q Consensus 400 ~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 476 (711)
+|. +..+|.. ++++++|++|++++| .+..+|. .+..+++|+.| ++++.
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L---------------------------~l~~n 159 (353)
T 2z80_A 109 YNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQIL---------------------------RVGNM 159 (353)
T ss_dssp SSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEE---------------------------EEEES
T ss_pred CCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEE---------------------------ECCCC
Confidence 543 4444443 455555555555555 3444443 23334444333 33332
Q ss_pred CCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcch
Q 039822 477 GGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNW 556 (711)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 556 (711)
..+. ......+.++++|+.|+++.|.+.... +..+..+++|+.|+++++.... .+..+
T Consensus 160 ~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------~~~l~~l~~L~~L~l~~n~l~~--~~~~~ 217 (353)
T 2z80_A 160 DTFT---KIQRKDFAGLTFLEELEIDASDLQSYE-----------------PKSLKSIQNVSHLILHMKQHIL--LLEIF 217 (353)
T ss_dssp SSCC---EECTTTTTTCCEEEEEEEEETTCCEEC-----------------TTTTTTCSEEEEEEEECSCSTT--HHHHH
T ss_pred cccc---ccCHHHccCCCCCCEEECCCCCcCccC-----------------HHHHhccccCCeecCCCCcccc--chhhh
Confidence 1110 111123445555666666655433221 2345556666777776666544 42333
Q ss_pred hhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccc
Q 039822 557 VMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEW 636 (711)
Q Consensus 557 ~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 636 (711)
+..+++|+.|++++| .++.++. ..... ....+.++.++++++. +...
T Consensus 218 ~~~~~~L~~L~L~~n-~l~~~~~-----------------------~~l~~--------~~~~~~l~~l~L~~~~-l~~~ 264 (353)
T 2z80_A 218 VDVTSSVECLELRDT-DLDTFHF-----------------------SELST--------GETNSLIKKFTFRNVK-ITDE 264 (353)
T ss_dssp HHHTTTEEEEEEESC-BCTTCCC-----------------------C--------------CCCCCCEEEEESCB-CCHH
T ss_pred hhhcccccEEECCCC-ccccccc-----------------------ccccc--------ccccchhhcccccccc-ccCc
Confidence 445666777777666 2332221 00000 0112333344443321 1110
Q ss_pred cccCccccccccCCcccEEeecCCCCCcCCCcCC-CCCCCccEEEEecCcc
Q 039822 637 DYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHL-LQKTTLQRLDIHGCPI 686 (711)
Q Consensus 637 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~l~~c~~ 686 (711)
... ..+..+..+++|+.|++++| +++.+|..+ ..+++|++|++++|+.
T Consensus 265 ~l~-~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 265 SLF-QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHH-HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred chh-hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 000 01122556777888888774 677777653 5677788888877653
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=3.2e-18 Score=174.83 Aligned_cols=250 Identities=11% Similarity=0.045 Sum_probs=167.2
Q ss_pred cCCcEEecCCCCCCc---cCCccccCCccCceeccCC-CCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCc
Q 039822 391 YNLQRLDVTYCKNLE---ELPPGIGKLRKLMYLDNRW-THSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLN 466 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~-~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~ 466 (711)
.+++.|++++|. +. .+|..++++++|++|++++ |.....+|..++.+++|++|++..+... ...+..+..++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGGGCT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHhCCC
Confidence 356667777665 43 5677777777777777774 4333456666777777777666554432 23445566677
Q ss_pred cCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCC-CccEEEEecc
Q 039822 467 LLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPP-NLKNLAIRKY 545 (711)
Q Consensus 467 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~ 545 (711)
+|+.|++++.. ........+..+++|+.|+++.|.+... ++..+..++ +|+.|++++|
T Consensus 126 ~L~~L~Ls~N~----l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 126 TLVTLDFSYNA----LSGTLPPSISSLPNLVGITFDGNRISGA-----------------IPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp TCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCEEE-----------------CCGGGGCCCTTCCEEECCSS
T ss_pred CCCEEeCCCCc----cCCcCChHHhcCCCCCeEECcCCcccCc-----------------CCHHHhhhhhcCcEEECcCC
Confidence 77777766531 1223344566778888888877754321 134555666 8999999988
Q ss_pred CCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccce
Q 039822 546 RGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKH 624 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 624 (711)
.... ..|..+..++ |+.|++++|.-....|. +..+++|+.|+++++. +...... +..+++|++
T Consensus 185 ~l~~--~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~------------~~~l~~L~~ 248 (313)
T 1ogq_A 185 RLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK------------VGLSKNLNG 248 (313)
T ss_dssp EEEE--ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG------------CCCCTTCCE
T ss_pred eeec--cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc------------ccccCCCCE
Confidence 8775 3377777776 99999999842223333 7889999999999886 4322221 336789999
Q ss_pred eecccCcccc-cccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchhh
Q 039822 625 LKFYDMEELE-EWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFEQ 689 (711)
Q Consensus 625 L~l~~~~~L~-~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~~ 689 (711)
|+++++. ++ .+ +..+..+++|+.|++++|..-..+|.. ..+++|+.++++++|.+..
T Consensus 249 L~Ls~N~-l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 249 LDLRNNR-IYGTL------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCSSC-CEECC------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EECcCCc-ccCcC------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999854 44 33 334778999999999996544477765 6789999999999987543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=172.15 Aligned_cols=225 Identities=18% Similarity=0.237 Sum_probs=154.4
Q ss_pred cCCcEEecCCCCCCccCC-ccccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 391 YNLQRLDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
.+|++|+|++|. +..++ ..+.++++|++|++++| .+..++ ..+..+++|+
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~-------------------------- 115 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLN-------------------------- 115 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCC--------------------------
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCC--------------------------
Confidence 456666666654 44443 45566666666666665 344333 2344444444
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCC
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGR 548 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 548 (711)
.|++++.. ........+..+++|+.|+++.|.+...+ ...+..+++|+.|+++++...
T Consensus 116 -~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-----------------~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 116 -TLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIESIP-----------------SYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp -EEECCSSC----CSSCCTTTSCSCSSCCEEECCSCCCCEEC-----------------TTTTTTCTTCCEEECCCCTTC
T ss_pred -EEECCCCc----CCeeCHhHhhccccCceeeCCCCcccccC-----------------HHHhhhCcccCEeCCCCCCCc
Confidence 44444321 11112234556677777777777544332 235667899999999986655
Q ss_pred CCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecc
Q 039822 549 RNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 549 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
.. +++..+..+++|+.|++++| .++.+|.+..+++|+.|++++|. ++.++... +..+++|++|+++
T Consensus 174 ~~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 174 SY-ISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGS-----------FQGLMHLQKLWMI 239 (440)
T ss_dssp CE-ECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECT
T ss_pred ce-eCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhh-----------hccCccCCEEECC
Confidence 53 43567889999999999999 78899999999999999999986 76664432 4578999999999
Q ss_pred cCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 629 DMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 629 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
++ .++.+. +..+..+++|+.|++++| +++.+|. .+..+++|+.|+++++|.
T Consensus 240 ~n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 240 QS-QIQVIE-----RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TC-CCCEEC-----TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CC-ceeEEC-----hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 84 566554 334678999999999994 7888886 456789999999998874
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.4e-16 Score=171.75 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=158.8
Q ss_pred cCCcEEecCCCCCCccC-CccccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 391 YNLQRLDVTYCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
.+|++|+|++|. +..+ |..+.++++|++|++++| .+..++ ..+..+++|+.|++..+...
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~---------------- 136 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLT---------------- 136 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS----------------
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCC----------------
Confidence 467777777765 5554 456777777777777777 444444 34555566555554322111
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCC
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGR 548 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 548 (711)
......+..+++|+.|+++.|.+...+ ...+..+++|+.|+++++...
T Consensus 137 ---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 137 ---------------VIPSGAFEYLSKLRELWLRNNPIESIP-----------------SYAFNRVPSLMRLDLGELKKL 184 (452)
T ss_dssp ---------------BCCTTTSSSCTTCCEEECCSCCCCEEC-----------------TTTTTTCTTCCEEECCCCTTC
T ss_pred ---------------ccChhhhcccCCCCEEECCCCCcceeC-----------------HhHHhcCCcccEEeCCCCCCc
Confidence 111223455667777777666544332 235667899999999986655
Q ss_pred CCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecc
Q 039822 549 RNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFY 628 (711)
Q Consensus 549 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 628 (711)
.. +++..+..+++|+.|++++| .++.+|.+..+++|+.|+++++. ++.++... +..+++|++|+++
T Consensus 185 ~~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 185 EY-ISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVM 250 (452)
T ss_dssp CE-ECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECT
T ss_pred cc-cChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeC
Confidence 53 43567889999999999999 77888999999999999999987 66664432 4478999999999
Q ss_pred cCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 629 DMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 629 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
++ .++.+. +..+..+++|+.|++++| +++.+|. .+..+++|+.|+++++|.
T Consensus 251 ~n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 251 NS-QVSLIE-----RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CC-cCceEC-----HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 85 465553 334678999999999995 7888886 456789999999998873
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.8e-16 Score=168.63 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcC---CCcCCCCC-------------CCccEEEEe
Q 039822 619 FPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKA---LPDHLLQK-------------TTLQRLDIH 682 (711)
Q Consensus 619 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---lp~~~~~~-------------~~L~~l~l~ 682 (711)
+++|++|+++++ .++.++. .+++|++|++++| .++. +|..+..+ ++|+.|+++
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE---------LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------------------
T ss_pred CCcCCEEECCCC-ccccccc---------hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 467788888774 4554432 3678888888875 4444 55555444 678888888
Q ss_pred cCcch
Q 039822 683 GCPIF 687 (711)
Q Consensus 683 ~c~~l 687 (711)
+++.-
T Consensus 405 ~N~l~ 409 (454)
T 1jl5_A 405 TNPLR 409 (454)
T ss_dssp -----
T ss_pred CCcCC
Confidence 87653
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.7e-16 Score=175.66 Aligned_cols=256 Identities=18% Similarity=0.106 Sum_probs=148.4
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCcc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEE 406 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~ 406 (711)
.++.+++.++.+..+|.... ++|++|++++|. +..+|. . +++|++|+|++|. +..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~----l~~lp~---~--------------l~~L~~L~Ls~N~-l~~ 95 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN----LTSLPA---L--------------PPELRTLEVSGNQ-LTS 95 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC----CSCCCC---C--------------CTTCCEEEECSCC-CSC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCC----CCCCCC---c--------------CCCCCEEEcCCCc-CCc
Confidence 46677777777777776553 678888888763 223443 2 2445555555543 445
Q ss_pred CCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhh
Q 039822 407 LPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAA 486 (711)
Q Consensus 407 lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~ 486 (711)
+|. .+++|++|++++| .+..+|. .+++|+.|++..+.... .+. .+++|+.|+++++. +....
T Consensus 96 lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls~N~-l~~l~--- 157 (622)
T 3g06_A 96 LPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTS----LPV---LPPGLQELSVSDNQ-LASLP--- 157 (622)
T ss_dssp CCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSC----CCC---CCTTCCEEECCSSC-CSCCC---
T ss_pred CCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCc----CCC---CCCCCCEEECcCCc-CCCcC---
Confidence 544 4455555555554 4444444 23334444332221111 111 12445555555421 11100
Q ss_pred HhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEE
Q 039822 487 KAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRAL 566 (711)
Q Consensus 487 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 566 (711)
....+|+.|+++.|.+...+ ..+++|+.|++++|.... + |. .+++|+.|
T Consensus 158 ----~~~~~L~~L~L~~N~l~~l~---------------------~~~~~L~~L~Ls~N~l~~--l-~~---~~~~L~~L 206 (622)
T 3g06_A 158 ----ALPSELCKLWAYNNQLTSLP---------------------MLPSGLQELSVSDNQLAS--L-PT---LPSELYKL 206 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCC---------------------CCCTTCCEEECCSSCCSC--C-CC---CCTTCCEE
T ss_pred ----CccCCCCEEECCCCCCCCCc---------------------ccCCCCcEEECCCCCCCC--C-CC---ccchhhEE
Confidence 12346666666666443321 235778888888877665 4 33 24678888
Q ss_pred eEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcccccc
Q 039822 567 VLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEI 646 (711)
Q Consensus 567 ~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 646 (711)
++++| .++.+|.. +++|+.|++++|. ++.++. .+++|+.|+++++ .++.++.
T Consensus 207 ~L~~N-~l~~l~~~--~~~L~~L~Ls~N~-L~~lp~---------------~l~~L~~L~Ls~N-~L~~lp~-------- 258 (622)
T 3g06_A 207 WAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV---------------LPSELKELMVSGN-RLTSLPM-------- 258 (622)
T ss_dssp ECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSS-CCSCCCC--------
T ss_pred ECcCC-cccccCCC--CCCCCEEEccCCc-cCcCCC---------------CCCcCcEEECCCC-CCCcCCc--------
Confidence 88877 56666642 4678888887774 554441 4577888888874 5665542
Q ss_pred ccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 647 IIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 647 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
.+++|+.|++++| +++.+|..+..+++|+.|++++|+.
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 4678888888884 6778887777788888888888864
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5.9e-17 Score=173.95 Aligned_cols=221 Identities=16% Similarity=0.072 Sum_probs=92.2
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~ 405 (711)
..++.+.++++.+..+|..+. ++++|++|++.+|.+ ...+|..++++.+|+++++..+. ..+|++|++++|. +.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~-~L~~L~~L~l~~n~~---~~~~p~~~~~l~~L~~l~l~~c~-~~~l~~L~l~~~~-l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEW---ERNAPPGNGEQREMAVSRLRDCL-DRQAHELELNNLG-LS 84 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH---HHTSCTTSCCCHHHHHHHHHHHH-HHTCSEEECTTSC-CS
T ss_pred ccchhhhcccCchhhCChhHh-cccchhhhhccCCcc---cccCCcccccchhcchhhhhhhh-ccCCCEEEecCCc-cc
Confidence 478888888888888887765 889999999987632 23567778887776444442221 1334444444443 44
Q ss_pred cCCccccCCccCceeccCCCCccccccccCCC----------------c-cccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 406 ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGE----------------L-IRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~----------------l-~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
.+|.. .++|++|++++| .+..+|..+.. + ++|++|++..+... . +..+..+++|
T Consensus 85 ~lp~~---~~~L~~L~l~~n-~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~---~--lp~~~~l~~L 155 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE---K--LPELQNSSFL 155 (454)
T ss_dssp CCCSC---CTTCSEEECCSS-CCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS---S--CCCCTTCTTC
T ss_pred cCCCC---cCCCCEEEccCC-cCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC---C--CcccCCCCCC
Confidence 44331 134444444443 23333322100 0 23333332221111 1 1134444444
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCC
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGR 548 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 548 (711)
+.|++++..- .... ....+|+.|+++.|.+... +.+..+++|+.|++++|...
T Consensus 156 ~~L~l~~N~l-~~lp-------~~~~~L~~L~L~~n~l~~l-------------------~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 156 KIIDVDNNSL-KKLP-------DLPPSLEFIAAGNNQLEEL-------------------PELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCSSC-------------------CCCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcC-cccC-------CCcccccEEECcCCcCCcC-------------------ccccCCCCCCEEECCCCcCC
Confidence 4444443210 1000 0112444444444432221 13555666677777666655
Q ss_pred CCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccc
Q 039822 549 RNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRME 595 (711)
Q Consensus 549 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~ 595 (711)
. + |.. .++|+.|++++| .++.+|.++.+++|++|+++++.
T Consensus 209 ~--l-~~~---~~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 209 K--L-PDL---PLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp S--C-CCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC
T ss_pred c--C-CCC---cCcccEEECcCC-cCCcccccCCCCCCCEEECCCCc
Confidence 4 3 322 246666777666 45566666666677777776654
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=5e-18 Score=173.91 Aligned_cols=244 Identities=13% Similarity=0.060 Sum_probs=163.7
Q ss_pred cccCCcEEecCCCCCCccCC-ccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCcc
Q 039822 389 ELYNLQRLDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNL 467 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~ 467 (711)
.+++|++|++++|. +..++ ..+.++++|++|++++| .+..+++ +..+++|+.|++..+ .+..+...+.
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n--------~l~~l~~~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN--------YVQELLVGPS 100 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSS--------EEEEEEECTT
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCC--------ccccccCCCC
Confidence 45677778887765 66554 46777888888888777 4544444 666677766665433 2333444566
Q ss_pred CCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCC
Q 039822 468 LRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRG 547 (711)
Q Consensus 468 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 547 (711)
|+.|.+++..- . .. ....+++|+.|+++.|.+...+ +..+..+++|+.|++++|..
T Consensus 101 L~~L~l~~n~l-~---~~---~~~~~~~L~~L~l~~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 101 IETLHAANNNI-S---RV---SCSRGQGKKNIYLANNKITMLR-----------------DLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp CCEEECCSSCC-S---EE---EECCCSSCEEEECCSSCCCSGG-----------------GBCTGGGSSEEEEECTTSCC
T ss_pred cCEEECCCCcc-C---Cc---CccccCCCCEEECCCCCCCCcc-----------------chhhhccCCCCEEECCCCCC
Confidence 77777765321 1 11 1223567888888877655432 23455678889999988887
Q ss_pred CCCCcCcchh-hcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceee
Q 039822 548 RRNVVPRNWV-MSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLK 626 (711)
Q Consensus 548 ~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 626 (711)
.. .++..+ ..+++|+.|++++| .++.++....+++|++|++++|. ++.++.. +..+++|++|+
T Consensus 157 ~~--~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L~ 220 (317)
T 3o53_A 157 DT--VNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPE------------FQSAAGVTWIS 220 (317)
T ss_dssp CE--EEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGG------------GGGGTTCSEEE
T ss_pred Cc--ccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCc-CCcchhh------------hcccCcccEEE
Confidence 76 434443 47888999999888 56777777778889999998886 7666654 23578899999
Q ss_pred cccCcccccccccCccccccccCCcccEEeecCCCCC-cCCCcCCCCCCCccEEEEecCcchhhh
Q 039822 627 FYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKL-KALPDHLLQKTTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 627 l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~L~~l~l~~c~~l~~~ 690 (711)
++++ .++.++.. +..+++|+.|++++++.. ..+|..+..++.|+.+++++|+.++..
T Consensus 221 L~~N-~l~~l~~~------~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 221 LRNN-KLVLIEKA------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CTTS-CCCEECTT------CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CcCC-cccchhhH------hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 9884 56665433 667888999999886543 245555666788888888877776654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=166.19 Aligned_cols=243 Identities=16% Similarity=0.101 Sum_probs=181.9
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~ 395 (711)
..++.|+++++.+..++...+..+++|++|++++|... ...|..|+++++|++|++ ..++++++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 48999999999999988877779999999999987432 223567999999999999 23778999999
Q ss_pred EecCCCCCCccCCc--cccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 396 LDVTYCKNLEELPP--GIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 396 L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
|++++|. +..+|. .+.++++|++|++++|..+..++ ..+..+++|+.|++..+... ...+..+..+++|+.|+
T Consensus 129 L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---EECTTTTTTCSEEEEEE
T ss_pred EECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---ccCHHHHhccccCCeec
Confidence 9999986 889987 78999999999999996677765 56888999998887665433 33456778888898888
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCC-
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNV- 551 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~- 551 (711)
+++.. ........+..+++|+.|+++.|.+...+... .........++.++++++......
T Consensus 205 l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 205 LHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHFSE--------------LSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp EECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------CCCCCCEEEEESCBCCHHHH
T ss_pred CCCCc----cccchhhhhhhcccccEEECCCCccccccccc--------------cccccccchhhccccccccccCcch
Confidence 88743 12233334556789999999988766554210 112234567788888877654321
Q ss_pred --cCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 552 --VPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 552 --~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
+ |.++..+++|+.|++++| .++.+|. ++.+++|++|++++++
T Consensus 267 ~~l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 267 FQV-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHH-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhh-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 456678888999999888 6667776 5778888888888875
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=2.6e-16 Score=160.48 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=123.4
Q ss_pred hcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEE
Q 039822 463 KKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAI 542 (711)
Q Consensus 463 ~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 542 (711)
..+++|+.|++++..- ......+..+++|+.|+++.|.+...+. ...+..+++|+.|++
T Consensus 75 ~~~~~L~~L~Ls~n~i-----~~l~~~~~~l~~L~~L~l~~n~l~~~~~----------------~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLKQMSE----------------FSVFLSLRNLIYLDI 133 (306)
T ss_dssp HSCSCCCEEECCSCSE-----EEEEEEEETCTTCCEEECTTSEEESSTT----------------TTTTTTCTTCCEEEC
T ss_pred ccccccCEEECCCCcc-----ccChhhcCCCCCCCEEECCCCccccccc----------------chhhhhccCCCEEEC
Confidence 3445555555554211 1122235567777777777665433321 235667889999999
Q ss_pred eccCCCCCCcCcchhhcCcCccEEeEeCCCCCC-CCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCC
Q 039822 543 RKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCE-HLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFP 620 (711)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 620 (711)
++|.... ..+..+..+++|+.|++++|.-.. .+|. +..+++|++|++++|. ++.++... +..++
T Consensus 134 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~ 199 (306)
T 2z66_A 134 SHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-----------FNSLS 199 (306)
T ss_dssp TTSCCEE--CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-----------TTTCT
T ss_pred CCCcCCc--cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH-----------hcCCC
Confidence 9988766 446778889999999999884222 2443 7888999999999886 66654322 34678
Q ss_pred ccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCC-CCccEEEEecCcc
Q 039822 621 KLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQK-TTLQRLDIHGCPI 686 (711)
Q Consensus 621 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~l~l~~c~~ 686 (711)
+|++|+++++ .++.++. ..+..+++|+.|++++|......|..+..+ ++|+.|++++++.
T Consensus 200 ~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 200 SLQVLNMSHN-NFFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTS-CCSBCCS-----GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCEEECCCC-ccCccCh-----hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 9999999885 4555442 235678999999999964434445566666 4899999998764
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.1e-16 Score=168.20 Aligned_cols=229 Identities=20% Similarity=0.117 Sum_probs=123.6
Q ss_pred EEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcEEecCC
Q 039822 331 LMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQRLDVTY 400 (711)
Q Consensus 331 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~ 400 (711)
+...+.....+|.... +++++|++++|.... ..|..|.++++|++|+| ..+.++.+|++|+|++
T Consensus 59 v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIP---SNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EECCSSCCSSCCSCCC---TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCccCCCCC---CCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3333344444444332 455555555542211 12344455555555554 2355666777777776
Q ss_pred CCCCccCCcc-ccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCC
Q 039822 401 CKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGG 478 (711)
Q Consensus 401 ~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 478 (711)
|. +..+|.. +.++++|++|++++| .+..+|. .+..+++|+.|++..+.... ......+..+++|+.|++++..-
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE--YISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCTTCCEEECTTSCC
T ss_pred Cc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc--ccChhhccCCCCCCEEECCCCcc
Confidence 65 6666544 566777777777776 4555554 35566666666544322211 11223344555566665554321
Q ss_pred CCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhh
Q 039822 479 VSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVM 558 (711)
Q Consensus 479 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 558 (711)
... ..+..+++|+.|+++.|.+.... +..+..+++|+.|+|++|.... ..+..+.
T Consensus 209 -~~~-----~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~ 263 (452)
T 3zyi_A 209 -KDM-----PNLTPLVGLEELEMSGNHFPEIR-----------------PGSFHGLSSLKKLWVMNSQVSL--IERNAFD 263 (452)
T ss_dssp -SSC-----CCCTTCTTCCEEECTTSCCSEEC-----------------GGGGTTCTTCCEEECTTSCCCE--ECTTTTT
T ss_pred -ccc-----ccccccccccEEECcCCcCcccC-----------------cccccCccCCCEEEeCCCcCce--ECHHHhc
Confidence 111 12455566666666666443332 3455566677777777766655 4455666
Q ss_pred cCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
.+++|+.|++++| .++.++. +..+++|+.|++++++
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 6777777777776 4555554 5566777777776654
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.8e-16 Score=161.63 Aligned_cols=225 Identities=18% Similarity=0.138 Sum_probs=116.5
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCcc
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEE 406 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~ 406 (711)
.++.|.+.++.+..+|...+..+++|++|++.+|.... ....|.. +..+.+|++|++++|. +..
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~--------------~~~~~~L~~L~Ls~n~-i~~ 92 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQS--------------DFGTTSLKYLDLSFNG-VIT 92 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE-EEEEEHH--------------HHSCSCCCEEECCSCS-EEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc-ccCcccc--------------cccccccCEEECCCCc-ccc
Confidence 45555555555555554444455555555555442110 0011222 2345667777777665 666
Q ss_pred CCccccCCccCceeccCCCCccccccc--cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhh
Q 039822 407 LPPGIGKLRKLMYLDNRWTHSLRFLSV--GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGK 484 (711)
Q Consensus 407 lP~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 484 (711)
+|..+..+++|++|++++| .+..+|. .+..+++|+.|++..+.. ......
T Consensus 93 l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~------------------------ 144 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNG------------------------ 144 (306)
T ss_dssp EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC---EECSTT------------------------
T ss_pred ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC---Cccchh------------------------
Confidence 6666777777777777776 4444443 344445444443322111 111112
Q ss_pred hhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCcc
Q 039822 485 AAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLR 564 (711)
Q Consensus 485 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 564 (711)
.+..+++|+.|+++.|.+... ..+..+..+++|+.|++++|.... .++.++..+++|+
T Consensus 145 ----~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 202 (306)
T 2z66_A 145 ----IFNGLSSLEVLKMAGNSFQEN----------------FLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQ 202 (306)
T ss_dssp ----TTTTCTTCCEEECTTCEEGGG----------------EECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCC
T ss_pred ----hcccCcCCCEEECCCCccccc----------------cchhHHhhCcCCCEEECCCCCcCC--cCHHHhcCCCCCC
Confidence 233444455555544422110 012345556677777777776655 4456666777777
Q ss_pred EEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCC-CccceeecccC
Q 039822 565 ALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAF-PKLKHLKFYDM 630 (711)
Q Consensus 565 ~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 630 (711)
.|++++| .++.++. +..+++|+.|+++++. +....... +..+ ++|++|+++++
T Consensus 203 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 203 VLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE-----------LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS-----------CCCCCTTCCEEECTTC
T ss_pred EEECCCC-ccCccChhhccCcccCCEeECCCCC-CcccCHHH-----------HHhhhccCCEEEccCC
Confidence 7777776 4444443 5566777777777765 33332211 2244 36777777663
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=166.41 Aligned_cols=229 Identities=20% Similarity=0.127 Sum_probs=120.1
Q ss_pred EEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcEEecCC
Q 039822 331 LMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQRLDVTY 400 (711)
Q Consensus 331 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~~ 400 (711)
+...+..+..+|.... ++++.|++++|.... ..+..|.++++|++|+| ..+.++.+|++|+|++
T Consensus 48 v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS---TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EECCSCCCSSCCSCCC---TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EEeCCCCcCcCCCCCC---CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3334444444554432 455555665542211 11234444555555444 2355666777777776
Q ss_pred CCCCccCCc-cccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCC
Q 039822 401 CKNLEELPP-GIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGG 478 (711)
Q Consensus 401 ~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 478 (711)
|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++..+.... ......+..+++|+.|++++..-
T Consensus 122 n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 122 NR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS--YISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCSSCCEEECTTSCC
T ss_pred Cc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcc--eeCcchhhcccccCeecCCCCcC
Confidence 64 666654 3666777777777766 4555554 35566666666544322111 11223344555555555554321
Q ss_pred CCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhh
Q 039822 479 VSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVM 558 (711)
Q Consensus 479 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 558 (711)
... ..+..+++|+.|+++.|.+.... +..+..+++|+.|+|++|.... .++..+.
T Consensus 198 -~~~-----~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~ 252 (440)
T 3zyj_A 198 -REI-----PNLTPLIKLDELDLSGNHLSAIR-----------------PGSFQGLMHLQKLWMIQSQIQV--IERNAFD 252 (440)
T ss_dssp -SSC-----CCCTTCSSCCEEECTTSCCCEEC-----------------TTTTTTCTTCCEEECTTCCCCE--ECTTSST
T ss_pred -ccc-----cccCCCcccCEEECCCCccCccC-----------------hhhhccCccCCEEECCCCceeE--EChhhhc
Confidence 110 12445556666666655443322 2345556666666666666555 4355566
Q ss_pred cCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 559 SLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
.+++|+.|+|++| .++.++. +..+++|+.|++++++
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 6666666666666 4555543 4556666666666554
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=1.2e-15 Score=172.42 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=100.4
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc----------cccccccCCc
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL----------KTLCELYNLQ 394 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l----------~~i~~L~~L~ 394 (711)
..++.|+++++.+..++...|.++++|++|+|++|. +..+ |.+|+++++|++|+| ..+++|.+|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 479999999999999998888899999999999874 4445 457999999999999 3478899999
Q ss_pred EEecCCCCCCccCCc-cccCCccCceeccCCCCcccc--ccccCCCccccCccCeeEe
Q 039822 395 RLDVTYCKNLEELPP-GIGKLRKLMYLDNRWTHSLRF--LSVGIGELIRLRGVSRFVL 449 (711)
Q Consensus 395 ~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~~~~~ 449 (711)
+|++++|. +..+|. .+++|++|++|++++| .+.. +|..++.+++|+.|++..+
T Consensus 128 ~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 128 KLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCc-CCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 99999986 888876 4899999999999999 4543 5677888999998876554
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=4.8e-17 Score=176.48 Aligned_cols=236 Identities=13% Similarity=0.059 Sum_probs=148.6
Q ss_pred cccCCcEEecCCCCCCccCC-ccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCcc
Q 039822 389 ELYNLQRLDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNL 467 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~ 467 (711)
.+++|++|+|++|. +..+| ..++++++|++|++++| .+...++ ++.+++|+.|++.++. +..+...++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~--------l~~l~~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY--------VQELLVGPS 100 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE--------EEEEEECTT
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc--------CCCCCCCCC
Confidence 45589999999876 76664 57889999999999988 5555544 7777887777665332 333444466
Q ss_pred CCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCC
Q 039822 468 LRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRG 547 (711)
Q Consensus 468 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 547 (711)
|+.|+++++.- .... ...+++|+.|+++.|.+.... +..+..+++|+.|+|++|..
T Consensus 101 L~~L~L~~N~l-~~~~------~~~l~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 101 IETLHAANNNI-SRVS------CSRGQGKKNIYLANNKITMLR-----------------DLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CCEEECCSSCC-CCEE------ECCCSSCEEEECCSSCCCSGG-----------------GBCGGGGSSEEEEECTTSCC
T ss_pred cCEEECcCCcC-CCCC------ccccCCCCEEECCCCCCCCCC-----------------chhhcCCCCCCEEECCCCCC
Confidence 77777776321 1111 123466777777777554432 23445567777777777776
Q ss_pred CCCCcCcchhh-cCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceee
Q 039822 548 RRNVVPRNWVM-SLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLK 626 (711)
Q Consensus 548 ~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 626 (711)
.. .+|..+. .+++|+.|++++| .++.++....+++|+.|++++|. ++.++.. +..+++|+.|+
T Consensus 157 ~~--~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------------~~~l~~L~~L~ 220 (487)
T 3oja_A 157 DT--VNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPE------------FQSAAGVTWIS 220 (487)
T ss_dssp CE--EEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGG------------GGGGTTCSEEE
T ss_pred CC--cChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCHh------------HcCCCCccEEE
Confidence 65 3344443 6777777777777 46666666667777777777765 6555543 23567777777
Q ss_pred cccCcccccccccCccccccccCCcccEEeecCCCCC-cCCCcCCCCCCCccEEEEe
Q 039822 627 FYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKL-KALPDHLLQKTTLQRLDIH 682 (711)
Q Consensus 627 l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~L~~l~l~ 682 (711)
+++ +.++.++.. +..+++|+.|++++|+.. ..+|..+..++.|+.++++
T Consensus 221 Ls~-N~l~~lp~~------l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 221 LRN-NKLVLIEKA------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTT-SCCCEECTT------CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ecC-CcCcccchh------hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777 345554432 556777777777775433 2344444445556555554
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=6.1e-18 Score=183.39 Aligned_cols=342 Identities=16% Similarity=0.109 Sum_probs=192.1
Q ss_pred CcEEEEEEEecCCCccccc-ccccCCcccEEEeccCCCCc-cccccchhhhccCccCCcCcc----------cc-cccc-
Q 039822 326 KKILHLMLTLYSGALVPIS-IWDNVKGLRSLLVDCDEYSW-SSEVLPQLFDKLTCLRALKLK----------TL-CELY- 391 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~lp~~~~~l~~L~~L~l~----------~i-~~L~- 391 (711)
.+++.|+++++.+...+.. .+..+++|++|++.+|.... ....++..+..+++|++|+++ .+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4789999998887754433 25588999999999885432 123567788889999999991 12 2244
Q ss_pred ---CCcEEecCCCCCCc-----cCCccccCCccCceeccCCCCccccc-cc----c-CCCccccCccCeeEecccCCCCc
Q 039822 392 ---NLQRLDVTYCKNLE-----ELPPGIGKLRKLMYLDNRWTHSLRFL-SV----G-IGELIRLRGVSRFVLGGGNDRAC 457 (711)
Q Consensus 392 ---~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~l~~l-p~----~-i~~l~~L~~L~~~~~~~~~~~~~ 457 (711)
+|++|++++|. +. .+|..+.++++|++|++++|. +... +. . ....++|+.|++..+.. ...
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~ 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---SAA 157 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC---BGG
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC---CHH
Confidence 69999999987 65 568888999999999999984 4322 22 1 12245677666543322 222
Q ss_pred C----cchhhcCccCCCeeecCcCCCCChh-hhhHhhh-cCCCCCceEEEEeecCCCCCcc-------------cccCCC
Q 039822 458 G----LESLKKLNLLRACSIYGLGGVSDGG-KAAKAEL-EKKKYLFYLRLRFDDLRDGDEE-------------QAGRRE 518 (711)
Q Consensus 458 ~----~~~L~~l~~L~~L~i~~~~~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~-------------~~~~~~ 518 (711)
. ...+..+++|+.|++++.. +.... ......+ ...++|+.|+++.|.+...... .+....
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 2 3445566778888877643 11110 1111111 1345777777776654432100 000011
Q ss_pred Cch--hhHHHHhhc-cCCCCCccEEEEeccCCCCCC---cCcchhhcCcCccEEeEeCCCCCCC-----CCC--CCCCCC
Q 039822 519 NEE--DEDERLLDA-LGPPPNLKNLAIRKYRGRRNV---VPRNWVMSLTNLRALVLKNCRNCEH-----LPP--LGKLPS 585 (711)
Q Consensus 519 ~~~--~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~--~~~l~~ 585 (711)
..- .....+... ...+++|+.|++++|...... + +..+..+++|+.|++++|. ++. +.. ....++
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCcc
Confidence 000 011112222 224566666666666543310 1 2334456667777776662 221 111 112356
Q ss_pred CCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccc-cCCcccEEeecCCCCCc
Q 039822 586 LEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEII-IMPRLSFLEIGGCRKLK 664 (711)
Q Consensus 586 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~ 664 (711)
|++|++++|. ++..+..... ..+..+++|++|+++++ .+.+...... ...+. ..++|+.|++++| .++
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l-~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNN-RLEDAGVREL-CQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSS-BCHHHHHHHH-HHHHTSTTCCCCEEECTTS-CCC
T ss_pred ceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCC-ccccccHHHH-HHHHcCCCCceEEEECCCC-CCC
Confidence 7777777665 3322111000 01335688888888886 4543321100 00111 2679999999997 565
Q ss_pred -----CCCcCCCCCCCccEEEEecCcc
Q 039822 665 -----ALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 665 -----~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
.+|..+..+++|++|++++|+-
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 5666666688999999999864
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=1e-14 Score=146.90 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=94.1
Q ss_pred hccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEecccccc
Q 039822 529 DALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLG 606 (711)
Q Consensus 529 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~ 606 (711)
..+..+++|+.|++++|.... .++..+..+++|+.|+++++ .++.++. ++.+++|++|+++++. ++.++...
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-- 172 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA-- 172 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT--
T ss_pred HHhcCCcCCCEEECCCCcCCE--ECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-ccccCHHH--
Confidence 345566778888887777666 44666777888888888877 4555554 6777888888888775 66555432
Q ss_pred CCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCc
Q 039822 607 VESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 607 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~ 685 (711)
+..+++|++|+++++ .++.+. +..+..+++|+.|++++| .++.+|. .+..+++|+.|+++++|
T Consensus 173 ---------~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 ---------FRGLHSLDRLLLHQN-RVAHVH-----PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---------TTTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ---------hcCccccCEEECCCC-cccccC-----HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 335778888888874 354442 234667888888888884 6777764 36667888888888776
Q ss_pred c
Q 039822 686 I 686 (711)
Q Consensus 686 ~ 686 (711)
.
T Consensus 237 ~ 237 (285)
T 1ozn_A 237 W 237 (285)
T ss_dssp E
T ss_pred c
Confidence 4
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-16 Score=163.89 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=136.8
Q ss_pred EecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEecCCCCCCc
Q 039822 334 TLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLDVTYCKNLE 405 (711)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~l~~~~~l~ 405 (711)
+.......+...+..+++|++|++++|.... ..|..++++++|++|++ ..++.+++|++|++++|. +.
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~ 93 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQ 93 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EE
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-cc
Confidence 3333333444555567788888888764321 22455555655555555 224455555555555554 44
Q ss_pred cCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 406 ELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 406 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
.+| .+++|++|++++| .+..++.. .+++ |+.|.+++.. ....
T Consensus 94 ~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~---------------------------L~~L~l~~N~----l~~~ 135 (317)
T 3o53_A 94 ELL----VGPSIETLHAANN-NISRVSCS--RGQG---------------------------KKNIYLANNK----ITML 135 (317)
T ss_dssp EEE----ECTTCCEEECCSS-CCSEEEEC--CCSS---------------------------CEEEECCSSC----CCSG
T ss_pred ccc----CCCCcCEEECCCC-ccCCcCcc--ccCC---------------------------CCEEECCCCC----CCCc
Confidence 443 2255555555555 33333322 1233 3334433311 1111
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhcc-CCCCCccEEEEeccCCCCCCcCcchhhcCcCcc
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDAL-GPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLR 564 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 564 (711)
....+..+++|+.|+++.|.+...+ +..+ ..+++|+.|++++|.... . +.. ..+++|+
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~~l~~L~~L~L~~N~l~~--~-~~~-~~l~~L~ 194 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVN-----------------FAELAASSDTLEHLNLQYNFIYD--V-KGQ-VVFAKLK 194 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEE-----------------GGGGGGGTTTCCEEECTTSCCCE--E-ECC-CCCTTCC
T ss_pred cchhhhccCCCCEEECCCCCCCccc-----------------HHHHhhccCcCCEEECCCCcCcc--c-ccc-cccccCC
Confidence 1223344455555555555433221 1122 235667777777766655 3 222 2366777
Q ss_pred EEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccc
Q 039822 565 ALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIK 643 (711)
Q Consensus 565 ~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 643 (711)
.|++++| .++.+|. +..+++|+.|++++|. ++.++.. +..+++|+.|++++++-.... .+
T Consensus 195 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~------------~~~l~~L~~L~l~~N~~~~~~-----~~ 255 (317)
T 3o53_A 195 TLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA------------LRFSQNLEHFDLRGNGFHCGT-----LR 255 (317)
T ss_dssp EEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTT------------CCCCTTCCEEECTTCCCBHHH-----HH
T ss_pred EEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhH------------hhcCCCCCEEEccCCCccCcC-----HH
Confidence 7777776 4445443 5666777777777765 5555543 235667777777764322011 12
Q ss_pred cccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcchh
Q 039822 644 GEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIFE 688 (711)
Q Consensus 644 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l~ 688 (711)
..+..+++|+.|++.+|+.++..+......+.+....-..|..+.
T Consensus 256 ~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 235567777777777666665543322112333333333455544
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=7.3e-17 Score=180.83 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=65.8
Q ss_pred CCCCccEEEEeccCCCCCCcCcchhh-cCcCccEEeEeC---CCCCCCCCC-------CCCCCCCCeeeeccccc-ceEe
Q 039822 533 PPPNLKNLAIRKYRGRRNVVPRNWVM-SLTNLRALVLKN---CRNCEHLPP-------LGKLPSLEDLEVCRMES-VKRV 600 (711)
Q Consensus 533 ~~~~L~~L~L~~~~~~~~~~~~~~~~-~l~~L~~L~l~~---~~~l~~l~~-------~~~l~~L~~L~l~~~~~-l~~l 600 (711)
.+++|++|++..+..... . ...+. .+++|+.|++++ |..++..|. +..+++|+.|+++.|.+ +...
T Consensus 376 ~~~~L~~L~l~~~~l~~~-~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNE-S-LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HCTTCSEEEEEESCCCHH-H-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hCccCeEEEeecCCccHH-H-HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 355666666644433321 1 22222 366666666663 334443321 23356666666655442 1111
Q ss_pred ccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcC--CCcCCCCCCCccE
Q 039822 601 GHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKA--LPDHLLQKTTLQR 678 (711)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~L~~ 678 (711)
..... ...+++|++|++++|. +++... +..+..+++|+.|++++|+ ++. ++..+..+++|+.
T Consensus 454 ~~~~~----------~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 454 GLSYI----------GQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp HHHHH----------HHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE
T ss_pred HHHHH----------HHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe
Confidence 11000 1135667777776643 332111 1113456777777777775 432 2222334677777
Q ss_pred EEEecCc
Q 039822 679 LDIHGCP 685 (711)
Q Consensus 679 l~l~~c~ 685 (711)
|++++|.
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 7777776
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=7.6e-16 Score=155.19 Aligned_cols=208 Identities=20% Similarity=0.165 Sum_probs=114.7
Q ss_pred EEEEEecCCCcccccccccCCcccEEEeccCCCCccccccc-hhhhccCccCCcCc----------cccccccCCcEEec
Q 039822 330 HLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLP-QLFDKLTCLRALKL----------KTLCELYNLQRLDV 398 (711)
Q Consensus 330 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l 398 (711)
.++..+..+..+|... .++|++|++.+|.. ..++ ..|.++++|++|++ ..++++++|++|++
T Consensus 15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI---PAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp EEECCSSCCSSCCTTC---CTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEcCcCCcccCCcCC---CCCceEEEeeCCcC----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 3444444555555443 35677777776532 2222 23333333333333 22344455555555
Q ss_pred CCCCCCccC-CccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcC
Q 039822 399 TYCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLG 477 (711)
Q Consensus 399 ~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 477 (711)
++|..+..+ |..+.++++|++|++++| .+..+ ....+..+++|+.|.+++..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--------------------------~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQEL--------------------------GPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCC--------------------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCC-cCCEE--------------------------CHhHhhCCcCCCEEECCCCc
Confidence 554334444 344555555555555555 23322 22333444444444444321
Q ss_pred CCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchh
Q 039822 478 GVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWV 557 (711)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 557 (711)
- .......+..+++|+.|+++.|.+...+ ...+..+++|+.|++++|.... ..+.++
T Consensus 141 l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~ 197 (285)
T 1ozn_A 141 L----QALPDDTFRDLGNLTHLFLHGNRISSVP-----------------ERAFRGLHSLDRLLLHQNRVAH--VHPHAF 197 (285)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCSSCCCEEC-----------------TTTTTTCTTCCEEECCSSCCCE--ECTTTT
T ss_pred c----cccCHhHhccCCCccEEECCCCcccccC-----------------HHHhcCccccCEEECCCCcccc--cCHhHc
Confidence 1 1111223556667777777766544332 2346667888888888888776 446778
Q ss_pred hcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 558 MSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 558 ~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
..+++|+.|++++| .++.++. +..+++|+.|++++++
T Consensus 198 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 88888999999888 5666664 7778889999888875
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=7e-15 Score=149.57 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=145.7
Q ss_pred cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhc
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKK 464 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 464 (711)
.....+.+|++|++++|. +..+| .+..+++|++|++++| .+..+|. +..+++|+.|++..+.... +..
T Consensus 35 ~~~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~--- 102 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKN-----VSA--- 102 (308)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSC-----CGG---
T ss_pred ecHHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCC-----chh---
Confidence 345678899999999986 88887 5899999999999998 6777766 6666666666554332111 112
Q ss_pred CccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEec
Q 039822 465 LNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRK 544 (711)
Q Consensus 465 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 544 (711)
+..+++|+.|+++.|.+... ..+..+++|+.|++++
T Consensus 103 -------------------------~~~l~~L~~L~l~~n~l~~~-------------------~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 103 -------------------------IAGLQSIKTLDLTSTQITDV-------------------TPLAGLSNLQVLYLDL 138 (308)
T ss_dssp -------------------------GTTCTTCCEEECTTSCCCCC-------------------GGGTTCTTCCEEECCS
T ss_pred -------------------------hcCCCCCCEEECCCCCCCCc-------------------hhhcCCCCCCEEECCC
Confidence 34455566666655543322 1366788999999999
Q ss_pred cCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccce
Q 039822 545 YRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKH 624 (711)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 624 (711)
|.... . +. +..+++|+.|++++| .++.++.+..+++|+.|++++|. ++.++. +..+++|++
T Consensus 139 n~l~~--~-~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------l~~l~~L~~ 199 (308)
T 1h6u_A 139 NQITN--I-SP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISP-------------LASLPNLIE 199 (308)
T ss_dssp SCCCC--C-GG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCCE
T ss_pred CccCc--C-cc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChh-------------hcCCCCCCE
Confidence 98877 4 22 778999999999999 67777778889999999999886 555543 347889999
Q ss_pred eecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc
Q 039822 625 LKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD 668 (711)
Q Consensus 625 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 668 (711)
|+++++ .++.++ .+..+++|+.|++++| .++..|.
T Consensus 200 L~L~~N-~l~~~~-------~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKNN-QISDVS-------PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp EECTTS-CCCBCG-------GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred EEccCC-ccCccc-------cccCCCCCCEEEccCC-eeecCCe
Confidence 999885 455543 1568999999999995 5777665
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.5e-14 Score=145.66 Aligned_cols=200 Identities=20% Similarity=0.215 Sum_probs=119.5
Q ss_pred ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhc
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKK 464 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 464 (711)
.++++.+|++++++++. ++.+|..+. ++|+.|++++| .+..++ ..+..+++|+.|++
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L------------------ 62 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNL------------------ 62 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEEC------------------
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEEC------------------
Confidence 36778889999999865 889998775 68999999998 455443 34555555554433
Q ss_pred CccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEec
Q 039822 465 LNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRK 544 (711)
Q Consensus 465 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 544 (711)
++.. +... .....+++|+.|++++
T Consensus 63 ---------~~n~----------------------------l~~~-------------------~~~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 63 ---------DRAE----------------------------LTKL-------------------QVDGTLPVLGTLDLSH 86 (290)
T ss_dssp ---------TTSC----------------------------CCEE-------------------ECCSCCTTCCEEECCS
T ss_pred ---------CCCc----------------------------cCcc-------------------cCCCCCCcCCEEECCC
Confidence 2210 0000 0002344555555555
Q ss_pred cCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCcc
Q 039822 545 YRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKL 622 (711)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L 622 (711)
|.... + |..+..+++|+.|+++++ .++.++. +..+++|++|+++++. ++.++... +..+++|
T Consensus 87 N~l~~--l-~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L 150 (290)
T 1p9a_G 87 NQLQS--L-PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGL-----------LTPTPKL 150 (290)
T ss_dssp SCCSS--C-CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTT-----------TTTCTTC
T ss_pred CcCCc--C-chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhh-----------cccccCC
Confidence 55544 4 444555666666666666 4445542 5566666666666654 44443322 2245667
Q ss_pred ceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 623 KHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 623 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
+.|++++ +.++.++.. .+..+++|+.|++++ +.++++|..+...++|+.++++++|.
T Consensus 151 ~~L~L~~-N~l~~l~~~-----~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLAN-NNLTELPAG-----LLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTT-SCCSCCCTT-----TTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCC-CcCCccCHH-----HhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 7777766 345544432 234677777777777 46777777666677777888776653
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=3e-14 Score=157.66 Aligned_cols=233 Identities=21% Similarity=0.127 Sum_probs=173.5
Q ss_pred CcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccc
Q 039822 350 KGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLR 429 (711)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 429 (711)
.++++|+++++. +..+|.. +. ++|++|++++|. +..+|. .+++|++|++++| .+.
T Consensus 40 ~~l~~L~ls~n~----L~~lp~~--------------l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N-~l~ 94 (622)
T 3g06_A 40 NGNAVLNVGESG----LTTLPDC--------------LP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLT 94 (622)
T ss_dssp HCCCEEECCSSC----CSCCCSC--------------CC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCS
T ss_pred CCCcEEEecCCC----cCccChh--------------hC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCC-cCC
Confidence 458899998763 3345543 22 689999999986 889988 6899999999999 688
Q ss_pred cccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCC
Q 039822 430 FLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDG 509 (711)
Q Consensus 430 ~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 509 (711)
.+|. .+++|+.|++..+.... +.. .+++|+.|.+++.. +.... ..+++|+.|+++.|.+...
T Consensus 95 ~lp~---~l~~L~~L~Ls~N~l~~-----l~~--~l~~L~~L~L~~N~-l~~lp-------~~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 95 SLPV---LPPGLLELSIFSNPLTH-----LPA--LPSGLCKLWIFGNQ-LTSLP-------VLPPGLQELSVSDNQLASL 156 (622)
T ss_dssp CCCC---CCTTCCEEEECSCCCCC-----CCC--CCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSCCSCC
T ss_pred cCCC---CCCCCCEEECcCCcCCC-----CCC--CCCCcCEEECCCCC-CCcCC-------CCCCCCCEEECcCCcCCCc
Confidence 8887 56788888765543332 111 46778888887642 22111 1247899999998865543
Q ss_pred CcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCee
Q 039822 510 DEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDL 589 (711)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L 589 (711)
+ ..+++|+.|++++|.... + | ..+++|+.|++++| .++.+|.. +++|+.|
T Consensus 157 ~---------------------~~~~~L~~L~L~~N~l~~--l-~---~~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L 206 (622)
T 3g06_A 157 P---------------------ALPSELCKLWAYNNQLTS--L-P---MLPSGLQELSVSDN-QLASLPTL--PSELYKL 206 (622)
T ss_dssp C---------------------CCCTTCCEEECCSSCCSC--C-C---CCCTTCCEEECCSS-CCSCCCCC--CTTCCEE
T ss_pred C---------------------CccCCCCEEECCCCCCCC--C-c---ccCCCCcEEECCCC-CCCCCCCc--cchhhEE
Confidence 2 135789999999998887 6 4 45789999999998 56777753 5799999
Q ss_pred eecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC
Q 039822 590 EVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH 669 (711)
Q Consensus 590 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 669 (711)
++++|. ++.++. .+++|+.|+++++ .++.++. .+++|+.|++++| +++++|.
T Consensus 207 ~L~~N~-l~~l~~---------------~~~~L~~L~Ls~N-~L~~lp~---------~l~~L~~L~Ls~N-~L~~lp~- 258 (622)
T 3g06_A 207 WAYNNR-LTSLPA---------------LPSGLKELIVSGN-RLTSLPV---------LPSELKELMVSGN-RLTSLPM- 258 (622)
T ss_dssp ECCSSC-CSSCCC---------------CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC-
T ss_pred ECcCCc-ccccCC---------------CCCCCCEEEccCC-ccCcCCC---------CCCcCcEEECCCC-CCCcCCc-
Confidence 999876 554432 3588999999985 6776652 5799999999995 7999997
Q ss_pred CCCCCCccEEEEecCc
Q 039822 670 LLQKTTLQRLDIHGCP 685 (711)
Q Consensus 670 ~~~~~~L~~l~l~~c~ 685 (711)
.+++|+.|++++|.
T Consensus 259 --~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQ 272 (622)
T ss_dssp --CCTTCCEEECCSSC
T ss_pred --ccccCcEEeCCCCC
Confidence 47899999999984
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=4.2e-17 Score=182.80 Aligned_cols=302 Identities=16% Similarity=0.103 Sum_probs=162.5
Q ss_pred cCCcccEEEeccCCCCc-cccccchhhhccCccCCcCcc--------------ccccccCCcEEecCCCCCCccCCcccc
Q 039822 348 NVKGLRSLLVDCDEYSW-SSEVLPQLFDKLTCLRALKLK--------------TLCELYNLQRLDVTYCKNLEELPPGIG 412 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~-~~~~lp~~~~~l~~L~~L~l~--------------~i~~L~~L~~L~l~~~~~l~~lP~~i~ 412 (711)
.+++|++|++.+|.... ....++..+.++++|++|++. .+.++++|++|++++|. +..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh
Confidence 45566666665542211 011133334455555555551 11244566666666654 555555556
Q ss_pred CCccCceeccCCCCcc---ccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhh
Q 039822 413 KLRKLMYLDNRWTHSL---RFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAE 489 (711)
Q Consensus 413 ~L~~L~~L~l~~~~~l---~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~ 489 (711)
++++|++|+++++... ...+..+..+++|+.|.+..+. ....+..+..+++|+.|+++++. +. .......
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~ 313 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG----PNEMPILFPFAAQIRKLDLLYAL-LE--TEDHCTL 313 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC----TTTGGGGGGGGGGCCEEEETTCC-CC--HHHHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc----hhHHHHHHhhcCCCcEEecCCCc-CC--HHHHHHH
Confidence 6666666666543221 1122234444444444332211 12234445567777777777654 22 1223344
Q ss_pred hcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEec----------cCCCCCCcCcchhhc
Q 039822 490 LEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRK----------YRGRRNVVPRNWVMS 559 (711)
Q Consensus 490 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~----------~~~~~~~~~~~~~~~ 559 (711)
+..+++|+.|++..+ .....+......+++|+.|+|++ |..............
T Consensus 314 ~~~~~~L~~L~L~~~-----------------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV-----------------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp HTTCTTCCEEEEEGG-----------------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred HHhCcCCCEEeccCc-----------------cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 677788888888732 12233333445577888898884 443331111223346
Q ss_pred CcCccEEeEeCCCCCCC--CCCCCC-CCCCCeeeeccc---ccceEeccc--cccCCCCCCCCcccCCCccceeecccCc
Q 039822 560 LTNLRALVLKNCRNCEH--LPPLGK-LPSLEDLEVCRM---ESVKRVGHE--FLGVESDTDGSSVIAFPKLKHLKFYDME 631 (711)
Q Consensus 560 l~~L~~L~l~~~~~l~~--l~~~~~-l~~L~~L~l~~~---~~l~~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 631 (711)
+++|++|+++.+ .++. +..++. +++|+.|++++| ..++..+.. +.. .+.++++|++|++++|.
T Consensus 377 ~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~--------~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 377 CQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS--------LLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp CTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH--------HHHHCTTCCEEEEECCG
T ss_pred CccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH--------HHHhCCCCCEEEEecCC
Confidence 888999888433 4432 122333 778999998753 334432211 100 02358899999998776
Q ss_pred c-cccccccCccccccccCCcccEEeecCCCCCcC--CCcCCCCCCCccEEEEecCcchhh
Q 039822 632 E-LEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKA--LPDHLLQKTTLQRLDIHGCPIFEQ 689 (711)
Q Consensus 632 ~-L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~L~~l~l~~c~~l~~ 689 (711)
+ +.+.... .-...+++|+.|++++|. ++. ++..+..+++|++|++++|+ +++
T Consensus 448 ~~l~~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 448 GGLTDLGLS----YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp GGCCHHHHH----HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred CCccHHHHH----HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence 4 3322111 011358999999999874 543 33344568999999999998 443
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=3.2e-16 Score=160.06 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=143.9
Q ss_pred cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccc--cccccCC-------CccccCccCeeEecccCCC
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLR--FLSVGIG-------ELIRLRGVSRFVLGGGNDR 455 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~--~lp~~i~-------~l~~L~~L~~~~~~~~~~~ 455 (711)
+.++...+|++|++++|. + .+|..+... |+.|++++| .+. .+|..+. .+++|+.|++..+....
T Consensus 37 ~~~~~~~~L~~l~l~~n~-l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-- 109 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDT-E-ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTG-- 109 (312)
T ss_dssp EEEEEEEECTTHHHHCCT-T-CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS--
T ss_pred EEEccCCCceeEeecccc-c-ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc--
Confidence 345556666666666655 4 666555443 666666665 332 2444333 45666666555544331
Q ss_pred CcCcchh--hcCccCCCeeecCcCCCCChhhhhHhhhc--CCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhcc
Q 039822 456 ACGLESL--KKLNLLRACSIYGLGGVSDGGKAAKAELE--KKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDAL 531 (711)
Q Consensus 456 ~~~~~~L--~~l~~L~~L~i~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (711)
..+..+ ..+++|+.|++++..- .... .....+. ..++|+.|+++.|.+...+ +..+
T Consensus 110 -~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~-----------------~~~~ 169 (312)
T 1wwl_A 110 -TAPPPLLEATGPDLNILNLRNVSW-ATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFS-----------------CEQV 169 (312)
T ss_dssp -CCCCCSSSCCSCCCSEEEEESCBC-SSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCC-----------------TTTC
T ss_pred -hhHHHHHHhcCCCccEEEccCCCC-cchh-HHHHHHHHhhcCCCcEEEeeCCCCccch-----------------HHHh
Confidence 222222 5566666666665321 1110 1111111 1267777777777665543 2456
Q ss_pred CCCCCccEEEEeccCCCCCCcCcchh--hcCcCccEEeEeCCCCCCCCCC-----CCCCCCCCeeeecccccceEecccc
Q 039822 532 GPPPNLKNLAIRKYRGRRNVVPRNWV--MSLTNLRALVLKNCRNCEHLPP-----LGKLPSLEDLEVCRMESVKRVGHEF 604 (711)
Q Consensus 532 ~~~~~L~~L~L~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~-----~~~l~~L~~L~l~~~~~l~~l~~~~ 604 (711)
..+++|+.|++++|........+..+ ..+++|+.|++++| .++.++. +..+++|++|+++++. ++..+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~- 246 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA- 246 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC-
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch-
Confidence 67778888888877654310001222 56778888888877 4443332 2356788888887765 4332210
Q ss_pred ccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecC
Q 039822 605 LGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGC 684 (711)
Q Consensus 605 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c 684 (711)
.....+++|++|+++++ .++.++.. +. ++|+.|++++ ++++.+|. +..+++|++|+++++
T Consensus 247 ---------~~~~~l~~L~~L~Ls~N-~l~~ip~~------~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 247 ---------PSCDWPSQLNSLNLSFT-GLKQVPKG------LP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ---------SCCCCCTTCCEEECTTS-CCSSCCSS------CC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred ---------hhhhhcCCCCEEECCCC-ccChhhhh------cc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 01234678888888874 46655433 22 7888888888 47888876 677888888888887
Q ss_pred cc
Q 039822 685 PI 686 (711)
Q Consensus 685 ~~ 686 (711)
+-
T Consensus 307 ~l 308 (312)
T 1wwl_A 307 PF 308 (312)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=2.8e-14 Score=139.56 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=92.5
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCcc---EEeEeCCCCCCCCCC--CCCCCCCC-eeeecccccceEeccc
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLR---ALVLKNCRNCEHLPP--LGKLPSLE-DLEVCRMESVKRVGHE 603 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~l~~--~~~l~~L~-~L~l~~~~~l~~l~~~ 603 (711)
.+..+++|+.|++++|.... + |. +..+++|+ .|+++++..++.++. +..+++|+ +|+++++. ++.++..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~--l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~ 174 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM--F-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGY 174 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS--C-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTT
T ss_pred HhCCCCCCCEEeCCCCCCcc--c-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHh
Confidence 34456677777777776665 4 33 55666666 888888766666664 67788888 88888776 6666654
Q ss_pred cccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccC-CcccEEeecCCCCCcCCCcCCCCCCCccEEEEe
Q 039822 604 FLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIM-PRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIH 682 (711)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~ 682 (711)
.+ ..++|++|++++++.++.++.. .+..+ ++|+.|++++ +.++.+|.. .+++|+.|+++
T Consensus 175 ~~------------~~~~L~~L~L~~n~~l~~i~~~-----~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 175 AF------------NGTKLDAVYLNKNKYLTVIDKD-----AFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp TT------------TTCEEEEEECTTCTTCCEECTT-----TTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECT
T ss_pred hc------------CCCCCCEEEcCCCCCcccCCHH-----HhhccccCCcEEECCC-CccccCChh--HhccCceeecc
Confidence 32 2267999999887667766532 35567 8999999998 578888865 47889999998
Q ss_pred cCcch
Q 039822 683 GCPIF 687 (711)
Q Consensus 683 ~c~~l 687 (711)
++..|
T Consensus 235 ~~~~l 239 (239)
T 2xwt_C 235 NTWTL 239 (239)
T ss_dssp TC---
T ss_pred CccCC
Confidence 88653
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=8.9e-14 Score=138.65 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=36.6
Q ss_pred cCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccc-cCCCccccCccCe
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSR 446 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~ 446 (711)
.++++++++++. ++.+|..+. ++|++|++++| .+..+|. .+..+++|+.|++
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYL 68 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEEC
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEEC
Confidence 457889998865 888887665 68999999988 5666654 4555555555543
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=9.7e-16 Score=156.44 Aligned_cols=238 Identities=20% Similarity=0.158 Sum_probs=146.4
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCc-----------cccc-------cccCCcEEecCCCCCCc-cCC
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL-----------KTLC-------ELYNLQRLDVTYCKNLE-ELP 408 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l-----------~~i~-------~L~~L~~L~l~~~~~l~-~lP 408 (711)
..++|+.|++.+|.. .+|..+... |++|++ ..+. ++.+|++|++++|. +. .+|
T Consensus 41 ~~~~L~~l~l~~n~l-----~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 112 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-----ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP 112 (312)
T ss_dssp EEEECTTHHHHCCTT-----CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred cCCCceeEeeccccc-----ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence 556777777777643 456655544 666666 1111 47888899998877 54 678
Q ss_pred ccc--cCCccCceeccCCCCccccccccCCCc-----cccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCC
Q 039822 409 PGI--GKLRKLMYLDNRWTHSLRFLSVGIGEL-----IRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSD 481 (711)
Q Consensus 409 ~~i--~~L~~L~~L~l~~~~~l~~lp~~i~~l-----~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~ 481 (711)
..+ ..+++|++|++++| .+..+|..++.+ ++|++|++..+... .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~---~------------------------- 163 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSL---N------------------------- 163 (312)
T ss_dssp CCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC---C-------------------------
T ss_pred HHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc---c-------------------------
Confidence 776 88888999998888 555556555544 45555544332211 1
Q ss_pred hhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhcc--CCCCCccEEEEeccCCCCCC-cCcchhh
Q 039822 482 GGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDAL--GPPPNLKNLAIRKYRGRRNV-VPRNWVM 558 (711)
Q Consensus 482 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~-~~~~~~~ 558 (711)
.....+..+++|+.|+++.|.+. ....++..+ ..+++|+.|++++|...... .+...+.
T Consensus 164 ---~~~~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 164 ---FSCEQVRVFPALSTLDLSDNPEL---------------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp ---CCTTTCCCCSSCCEEECCSCTTC---------------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred ---chHHHhccCCCCCEEECCCCCcC---------------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 11223445556666666555211 111123333 66788888888888766400 1112334
Q ss_pred cCcCccEEeEeCCCCCCCC---CCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCccccc
Q 039822 559 SLTNLRALVLKNCRNCEHL---PPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEE 635 (711)
Q Consensus 559 ~l~~L~~L~l~~~~~l~~l---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 635 (711)
.+++|+.|+++++ .++.. +.+..+++|++|++++|. ++.++..+ +++|++|++++ +.++.
T Consensus 226 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--------------~~~L~~L~Ls~-N~l~~ 288 (312)
T 1wwl_A 226 ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--------------PAKLSVLDLSY-NRLDR 288 (312)
T ss_dssp TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--------------CSEEEEEECCS-SCCCS
T ss_pred cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--------------cCCceEEECCC-CCCCC
Confidence 6788888888888 34442 335567888888888876 55554421 26788898887 46776
Q ss_pred ccccCccccccccCCcccEEeecCCCCCcC
Q 039822 636 WDYGTAIKGEIIIMPRLSFLEIGGCRKLKA 665 (711)
Q Consensus 636 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 665 (711)
++. +..+++|+.|+++++ .++.
T Consensus 289 ~p~-------~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 289 NPS-------PDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp CCC-------TTTSCEEEEEECTTC-TTTC
T ss_pred Chh-------HhhCCCCCEEeccCC-CCCC
Confidence 643 346889999999884 4543
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=6.4e-16 Score=173.23 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=76.0
Q ss_pred CCCccEEEEeccCCCCCCcCcchh-hcCcCccEEeEe-----CCCCCCCCCC-------CCCCCCCCeeeecccccceEe
Q 039822 534 PPNLKNLAIRKYRGRRNVVPRNWV-MSLTNLRALVLK-----NCRNCEHLPP-------LGKLPSLEDLEVCRMESVKRV 600 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~~~~~-~~l~~L~~L~l~-----~~~~l~~l~~-------~~~l~~L~~L~l~~~~~l~~l 600 (711)
+++|+.|.+.++..... . ...+ ..+++|+.|+++ +|..++..|. +..+++|+.|++++ .+...
T Consensus 371 ~~~L~~L~~~~~~l~~~-~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNA-A-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHH-H-HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred chhHHHHHHhcCCcCHH-H-HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 45666665544433321 1 1222 246777777777 4445554432 33456777777754 22222
Q ss_pred ccccccCCCCCCCCccc-CCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC--CcCCCCCCCcc
Q 039822 601 GHEFLGVESDTDGSSVI-AFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL--PDHLLQKTTLQ 677 (711)
Q Consensus 601 ~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~~~~L~ 677 (711)
.... +. .+++|+.|++++|. +++.... .-...+++|+.|++++|+. +.. +..+..+++|+
T Consensus 447 ~~~~-----------l~~~~~~L~~L~L~~~~-i~~~~~~----~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 447 VFEY-----------IGTYAKKMEMLSVAFAG-DSDLGMH----HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMR 509 (594)
T ss_dssp HHHH-----------HHHHCTTCCEEEEESCC-SSHHHHH----HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSS
T ss_pred HHHH-----------HHHhchhccEeeccCCC-CcHHHHH----HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCC
Confidence 1111 11 26788888888765 4322111 0014689999999999875 321 11334578999
Q ss_pred EEEEecCcchhh
Q 039822 678 RLDIHGCPIFEQ 689 (711)
Q Consensus 678 ~l~l~~c~~l~~ 689 (711)
.|++++|+.-.+
T Consensus 510 ~L~l~~~~~~~~ 521 (594)
T 2p1m_B 510 SLWMSSCSVSFG 521 (594)
T ss_dssp EEEEESSCCBHH
T ss_pred EEeeeCCCCCHH
Confidence 999999987333
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=6.4e-15 Score=159.73 Aligned_cols=222 Identities=16% Similarity=0.091 Sum_probs=168.6
Q ss_pred cCCccccC----CccCceeccCCCCcccccc-ccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCC
Q 039822 406 ELPPGIGK----LRKLMYLDNRWTHSLRFLS-VGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVS 480 (711)
Q Consensus 406 ~lP~~i~~----L~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~ 480 (711)
.+|..+.. +++|++|++++| .+..+| ..++.+++|+.|++..+.... ...+..+++|+.|++++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~l~~l~~L~~L~Ls~N~--- 91 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNY--- 91 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEE-----EEECTTCTTCCEEECCSSE---
T ss_pred hhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCC-----CcccccCCCCCEEEecCCc---
Confidence 34555544 448999999999 566554 678999999988876543322 2237888999999998742
Q ss_pred ChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcC
Q 039822 481 DGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSL 560 (711)
Q Consensus 481 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l 560 (711)
.. .+...++|+.|+++.|.+...+. ..+++|+.|++++|.... .++..+..+
T Consensus 92 -l~-----~l~~~~~L~~L~L~~N~l~~~~~--------------------~~l~~L~~L~L~~N~l~~--~~~~~~~~l 143 (487)
T 3oja_A 92 -VQ-----ELLVGPSIETLHAANNNISRVSC--------------------SRGQGKKNIYLANNKITM--LRDLDEGCR 143 (487)
T ss_dssp -EE-----EEEECTTCCEEECCSSCCCCEEE--------------------CCCSSCEEEECCSSCCCS--GGGBCGGGG
T ss_pred -CC-----CCCCCCCcCEEECcCCcCCCCCc--------------------cccCCCCEEECCCCCCCC--CCchhhcCC
Confidence 11 23344899999999987655431 235789999999999888 657788899
Q ss_pred cCccEEeEeCCCCCCCC-CC-CC-CCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCccccccc
Q 039822 561 TNLRALVLKNCRNCEHL-PP-LG-KLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWD 637 (711)
Q Consensus 561 ~~L~~L~l~~~~~l~~l-~~-~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 637 (711)
++|+.|++++| .++.+ |. +. .+++|+.|++++|. ++.++. ...+++|+.|+++++ .++.++
T Consensus 144 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~~~ 207 (487)
T 3oja_A 144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLAFMG 207 (487)
T ss_dssp SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCCEEC
T ss_pred CCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCCCCC
Confidence 99999999999 45543 32 43 68999999999987 666533 235899999999984 577665
Q ss_pred ccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcch
Q 039822 638 YGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPIF 687 (711)
Q Consensus 638 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~l 687 (711)
.. +..+++|+.|++++ +.++.+|..+..+++|+.|++++|+..
T Consensus 208 ~~------~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 PE------FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GG------GGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred Hh------HcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 43 77899999999999 578889988888999999999998865
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=3.4e-16 Score=169.62 Aligned_cols=223 Identities=20% Similarity=0.157 Sum_probs=135.3
Q ss_pred CcccEEEeccCCCCccccccchhhhccCccCCcCc--------------cccccccCCcEEecCCCCCCcc-CCccc-cC
Q 039822 350 KGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------------KTLCELYNLQRLDVTYCKNLEE-LPPGI-GK 413 (711)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------------~~i~~L~~L~~L~l~~~~~l~~-lP~~i-~~ 413 (711)
+.|++|+++++.... ......+..+++|++|++ ..+..+++|++|++++|. +.. .+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 678999999874322 123444788999999999 224556999999999987 643 23222 34
Q ss_pred Cc----cCceeccCCCCccc-----cccccCCCccccCccCeeEecccCCCCcCcchhh-----cCccCCCeeecCcCCC
Q 039822 414 LR----KLMYLDNRWTHSLR-----FLSVGIGELIRLRGVSRFVLGGGNDRACGLESLK-----KLNLLRACSIYGLGGV 479 (711)
Q Consensus 414 L~----~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~-----~l~~L~~L~i~~~~~~ 479 (711)
++ +|++|++++| .+. .+|..+..+++|+.|++..+... ...+..+. ..++|+.|+++++.-.
T Consensus 80 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCH---HHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCc---hHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 55 7999999999 454 56778889999998877654322 12222222 2457999999876322
Q ss_pred CChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccC-CCCCccEEEEeccCCCCCC---cCcc
Q 039822 480 SDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALG-PPPNLKNLAIRKYRGRRNV---VPRN 555 (711)
Q Consensus 480 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~---~~~~ 555 (711)
..........+..+++|+.|+++.|.+... ....+...+. ..++|+.|++++|...... + +.
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~ 221 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEA-------------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CG 221 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHH-------------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HH
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchH-------------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HH
Confidence 222234456677889999999998853221 1111222221 2446777777666554411 1 33
Q ss_pred hhhcCcCccEEeEeCCCCCCCC------CC-CCCCCCCCeeeeccc
Q 039822 556 WVMSLTNLRALVLKNCRNCEHL------PP-LGKLPSLEDLEVCRM 594 (711)
Q Consensus 556 ~~~~l~~L~~L~l~~~~~l~~l------~~-~~~l~~L~~L~l~~~ 594 (711)
++..+++|+.|++++| .++.. +. ...+++|++|++++|
T Consensus 222 ~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 222 IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 4445666677766666 22221 11 223556666666665
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=8.4e-14 Score=144.47 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=126.4
Q ss_pred cCCcEEecCCCCCCccCCcc-ccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 391 YNLQRLDVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
.+|++|+|++|. ++.+|.. +.+|++|++|++++|...+.+|.+ +.++++|+.+.....
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~------------------- 89 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA------------------- 89 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE-------------------
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC-------------------
Confidence 456777777655 6666653 567777777777776444555543 344444443322111
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCC
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGR 548 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 548 (711)
.++. ......+..+++|+.|+++.|.+...+. ..+....++..|++.++...
T Consensus 90 --------N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----------------~~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 90 --------NNLL---YINPEAFQNLPNLQYLLISNTGIKHLPD-----------------VHKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp --------TTCC---EECTTSBCCCTTCCEEEEEEECCSSCCC-----------------CTTCCBSSCEEEEEESCTTC
T ss_pred --------Cccc---ccCchhhhhccccccccccccccccCCc-----------------hhhcccchhhhhhhcccccc
Confidence 1111 1112335566677777777775544431 12223345666666554333
Q ss_pred CCCcCcchhhcC-cCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceee
Q 039822 549 RNVVPRNWVMSL-TNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLK 626 (711)
Q Consensus 549 ~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 626 (711)
.. +++..+..+ ..++.|+++++ .++.++. ....++|+.|.+.++..++.++...+ ..+++|+.|+
T Consensus 142 ~~-l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-----------~~l~~L~~Ld 208 (350)
T 4ay9_X 142 HT-IERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----------HGASGPVILD 208 (350)
T ss_dssp CE-ECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT-----------TTEECCSEEE
T ss_pred cc-ccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHh-----------ccCcccchhh
Confidence 32 323333333 35677777776 5556554 34456777777776666776665432 3567777777
Q ss_pred cccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEec
Q 039822 627 FYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHG 683 (711)
Q Consensus 627 l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~ 683 (711)
++++ +++.++.. .+.+|+.|.+.+|++++.+|. +..+++|+.+++.+
T Consensus 209 Ls~N-~l~~lp~~--------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 209 ISRT-RIHSLPSY--------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CTTS-CCCCCCSS--------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cCCC-CcCccChh--------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 7773 56666544 566777777777777777773 55677777777753
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=8.1e-14 Score=136.24 Aligned_cols=198 Identities=13% Similarity=0.059 Sum_probs=138.9
Q ss_pred CCcEEecCCCCCCccCCc-cccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 392 NLQRLDVTYCKNLEELPP-GIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
+|++|++++|. ++.+|. .+.++++|++|++++|..+..+|. .+..+++|+.|++..+.
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n------------------- 91 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR------------------- 91 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-------------------
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-------------------
Confidence 78888888876 777766 678888888888888844777665 45666666666554311
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCcc---EEEEecc-
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK---NLAIRKY- 545 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~L~~~- 545 (711)
.+. ......+..+++|+.|+++.|.+...+ .+..+++|+ .|++++|
T Consensus 92 --------~l~---~i~~~~f~~l~~L~~L~l~~n~l~~lp-------------------~~~~l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 92 --------NLT---YIDPDALKELPLLKFLGIFNTGLKMFP-------------------DLTKVYSTDIFFILEITDNP 141 (239)
T ss_dssp --------TCC---EECTTSEECCTTCCEEEEEEECCCSCC-------------------CCTTCCBCCSEEEEEEESCT
T ss_pred --------Cee---EcCHHHhCCCCCCCEEeCCCCCCcccc-------------------ccccccccccccEEECCCCc
Confidence 000 111123556677888888888655432 144556666 9999998
Q ss_pred CCCCCCcCcchhhcCcCcc-EEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCC-Ccc
Q 039822 546 RGRRNVVPRNWVMSLTNLR-ALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAF-PKL 622 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~L 622 (711)
.... +++..+..+++|+ .|+++++ .++.+|. ....++|+.|+++++..++.++... +..+ ++|
T Consensus 142 ~l~~--i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-----------~~~l~~~L 207 (239)
T 2xwt_C 142 YMTS--IPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-----------FGGVYSGP 207 (239)
T ss_dssp TCCE--ECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-----------TTTCSBCC
T ss_pred chhh--cCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-----------hhccccCC
Confidence 6666 6466788899999 9999988 5667765 2233799999999986688776643 2356 899
Q ss_pred ceeecccCcccccccccCccccccccCCcccEEeecCCCC
Q 039822 623 KHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRK 662 (711)
Q Consensus 623 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 662 (711)
+.|++++ +.++.++.. .|++|+.|.+.++..
T Consensus 208 ~~L~l~~-N~l~~l~~~--------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 208 SLLDVSQ-TSVTALPSK--------GLEHLKELIARNTWT 238 (239)
T ss_dssp SEEECTT-CCCCCCCCT--------TCTTCSEEECTTC--
T ss_pred cEEECCC-CccccCChh--------HhccCceeeccCccC
Confidence 9999998 567766543 799999999998754
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=5.2e-14 Score=143.12 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=122.4
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHS 427 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 427 (711)
++++|++|++.++. +..+| .++.+++|++|++++|. +..+|. +.++++|++|++++| .
T Consensus 39 ~l~~L~~L~l~~~~----i~~l~---------------~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~ 96 (308)
T 1h6u_A 39 DLDGITTLSAFGTG----VTTIE---------------GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-P 96 (308)
T ss_dssp HHHTCCEEECTTSC----CCCCT---------------TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-C
T ss_pred HcCCcCEEEeeCCC----ccCch---------------hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-c
Confidence 57888888888763 22233 24455666666666664 666665 666677777777666 4
Q ss_pred cccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCC
Q 039822 428 LRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLR 507 (711)
Q Consensus 428 l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 507 (711)
+..+| .+..+++|+.|++..+... .+..+..+++|+.|++++..- ... ..+..+++|+.|+++.|.+.
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~l~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTSTQIT-----DVTPLAGLSNLQVLYLDLNQI-TNI-----SPLAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTTSCCC-----CCGGGTTCTTCCEEECCSSCC-CCC-----GGGGGCTTCCEEECCSSCCC
T ss_pred CCCch-hhcCCCCCCEEECCCCCCC-----CchhhcCCCCCCEEECCCCcc-CcC-----ccccCCCCccEEEccCCcCC
Confidence 55554 3555555555544332221 123356666666666665321 111 11566777777777777554
Q ss_pred CCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCC
Q 039822 508 DGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLE 587 (711)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~ 587 (711)
..+ .+..+++|+.|++++|.... . +. +..+++|+.|++++| .+..++.+..+++|+
T Consensus 165 ~~~-------------------~l~~l~~L~~L~l~~n~l~~--~-~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~ 220 (308)
T 1h6u_A 165 DLT-------------------PLANLSKLTTLKADDNKISD--I-SP-LASLPNLIEVHLKNN-QISDVSPLANTSNLF 220 (308)
T ss_dssp CCG-------------------GGTTCTTCCEEECCSSCCCC--C-GG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCC
T ss_pred CCh-------------------hhcCCCCCCEEECCCCccCc--C-hh-hcCCCCCCEEEccCC-ccCccccccCCCCCC
Confidence 332 15667888888888887766 4 22 677888888888888 566666777888888
Q ss_pred eeeecccccceEecc
Q 039822 588 DLEVCRMESVKRVGH 602 (711)
Q Consensus 588 ~L~l~~~~~l~~l~~ 602 (711)
.|+++++. +...+.
T Consensus 221 ~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 221 IVTLTNQT-ITNQPV 234 (308)
T ss_dssp EEEEEEEE-EECCCE
T ss_pred EEEccCCe-eecCCe
Confidence 88888776 554444
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=1.6e-13 Score=137.31 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=66.0
Q ss_pred cCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCC--CCC-CCCCCCCCeeeecccccceEeccccccC
Q 039822 531 LGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEH--LPP-LGKLPSLEDLEVCRMESVKRVGHEFLGV 607 (711)
Q Consensus 531 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 607 (711)
+..+++|+.|+++++.... .++..+..+++|+.|+++++ .++. +|. ++.+++|++|++++|. ++.++...
T Consensus 96 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--- 168 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD--- 168 (276)
T ss_dssp TTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGG---
T ss_pred hcCCccccEEECCCCCccc--cCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHH---
Confidence 3344555555555555444 32334555566666666655 2332 232 5555666666666654 44443321
Q ss_pred CCCCCCCcccCCCccc----eeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCCCccEEEEe
Q 039822 608 ESDTDGSSVIAFPKLK----HLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIH 682 (711)
Q Consensus 608 ~~~~~~~~~~~~~~L~----~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~ 682 (711)
+..+++|+ +|++++ +.++.++.. .....+|+.|++++| .++.+|.. +..+++|+.|+++
T Consensus 169 --------~~~l~~L~~l~l~L~ls~-n~l~~~~~~------~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 169 --------LRVLHQMPLLNLSLDLSL-NPMNFIQPG------AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp --------GHHHHTCTTCCEEEECCS-SCCCEECTT------SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECC
T ss_pred --------hhhhhhccccceeeecCC-CcccccCcc------ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEcc
Confidence 11223333 566655 334444322 223446777777764 46666653 3556677777776
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=6.6e-14 Score=139.71 Aligned_cols=208 Identities=19% Similarity=0.147 Sum_probs=122.8
Q ss_pred cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhc
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKK 464 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 464 (711)
.....+.+|+.|++++|. +..++. ++.+++|++|++++| .+..++ .+..+++|+.|++..+... ....
T Consensus 35 ~~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~---~~~~----- 102 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQ---SLPN----- 102 (272)
T ss_dssp ECHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCC---CCCT-----
T ss_pred cccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccC---ccCh-----
Confidence 456678889999999876 777664 888999999999988 455443 4445555554443222111 1111
Q ss_pred CccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEec
Q 039822 465 LNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRK 544 (711)
Q Consensus 465 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 544 (711)
..+..+++|+.|+++.|.+...+ +..+..+++|+.|++++
T Consensus 103 -----------------------~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 103 -----------------------GVFDKLTNLKELVLVENQLQSLP-----------------DGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp -----------------------TTTTTCTTCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEECCS
T ss_pred -----------------------hHhcCCcCCCEEECCCCcCCccC-----------------HHHhccCCCCCEEECCC
Confidence 12334445555555555433322 22355667777777777
Q ss_pred cCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCcc
Q 039822 545 YRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKL 622 (711)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L 622 (711)
|.... +++.++..+++|+.|++++| .++.++. ++.+++|++|++++|. ++.++... +..+++|
T Consensus 143 n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L 207 (272)
T 3rfs_A 143 NQLQS--LPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV-----------FDRLTSL 207 (272)
T ss_dssp SCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTC
T ss_pred CccCc--cCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccCHHH-----------HhCCcCC
Confidence 76665 54555667777777777777 4555554 5667777777777765 44443321 2356777
Q ss_pred ceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCC
Q 039822 623 KHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQ 672 (711)
Q Consensus 623 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 672 (711)
++|++++++ + .+.+|+|+.|.+..+..-..+|..+..
T Consensus 208 ~~L~l~~N~-~------------~~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 208 QYIWLHDNP-W------------DCTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CEEECCSSC-B------------CCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CEEEccCCC-c------------cccCcHHHHHHHHHHhCCCcccCcccc
Confidence 777777653 1 124666777776664444456655443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=1.5e-13 Score=138.20 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=34.3
Q ss_pred cCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccc
Q 039822 531 LGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRME 595 (711)
Q Consensus 531 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~ 595 (711)
+..+++|+.|+|++|.... +++..+..+++|+.|+++++ .++.+|. +...++|+.|++.+++
T Consensus 144 ~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 3445566666666665554 43444555666666666665 4445554 4445566666665543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=4.1e-15 Score=153.75 Aligned_cols=205 Identities=17% Similarity=0.126 Sum_probs=112.5
Q ss_pred cCCcEEecCCCCCCccCCccccCCccCceeccCCCCccc-c-ccccCCCccccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLR-F-LSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~-~-lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
.++++|++++|. +...+..+.++++|++|++++|. +. . +|..+..+++|+.|++..+. .....+..+..+++|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~---l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR---LSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB---CCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc---cCHHHHHHHhcCCCC
Confidence 445555555543 44444445555555555555552 22 1 44444455555554443221 112234455556666
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEee-cCCCCCcccccCCCCchhhHHHHhhccCCCC-CccEEEEeccC
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFD-DLRDGDEEQAGRRENEEDEDERLLDALGPPP-NLKNLAIRKYR 546 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 546 (711)
+.|+++++..+.. ......+..+++|+.|++++| .+. ...++..+..++ +|+.|++++|.
T Consensus 145 ~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~----------------~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 145 VRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFT----------------EKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp SEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCC----------------HHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcC----------------hHHHHHHHHhcccCCCEEEeCCCc
Confidence 6666666533221 123344566777777777766 322 112334445566 88888888774
Q ss_pred --CCCCCcCcchhhcCcCccEEeEeCCCCCC--CCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCcc
Q 039822 547 --GRRNVVPRNWVMSLTNLRALVLKNCRNCE--HLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKL 622 (711)
Q Consensus 547 --~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L 622 (711)
.....+ +..+..+++|+.|++++|..++ .++.+..+++|++|++++|..+...... .+..+++|
T Consensus 207 ~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------~l~~~~~L 274 (336)
T 2ast_B 207 KNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----------ELGEIPTL 274 (336)
T ss_dssp GGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-----------GGGGCTTC
T ss_pred ccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-----------HHhcCCCC
Confidence 221113 4556678888888888885443 2445677788888888887632211110 13467888
Q ss_pred ceeecccC
Q 039822 623 KHLKFYDM 630 (711)
Q Consensus 623 ~~L~l~~~ 630 (711)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 88888876
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=7.5e-13 Score=131.92 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEe
Q 039822 532 GPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRV 600 (711)
Q Consensus 532 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l 600 (711)
..+++|+.|+|++|.... +++..+..+++|+.|++++| .++.++. +..+++|++|+++++. ++.+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 196 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRV 196 (270)
T ss_dssp TTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCC
T ss_pred CcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcC
Confidence 344555555555555444 32334455555555555555 3444433 4455555555555553 4433
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=3.5e-15 Score=154.31 Aligned_cols=251 Identities=20% Similarity=0.174 Sum_probs=171.4
Q ss_pred cCCcEEecCCCCCCccCCccccCC--ccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccC
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKL--RKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLL 468 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L--~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L 468 (711)
..++.++++++. +. |..+..+ ++++.|++++| .+...+..+..+++|+.|++..+.... ......+..+++|
T Consensus 47 ~~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEV--STLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECH--HHHHHHHTTBCCC
T ss_pred hhheeecccccc-CC--HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCH--HHHHHHHhhCCCC
Confidence 348999999865 44 5667777 89999999998 566666667788888888765443211 1144567788999
Q ss_pred CCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEee-cCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEecc-C
Q 039822 469 RACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFD-DLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKY-R 546 (711)
Q Consensus 469 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~ 546 (711)
+.|+++++. ........+..+++|+.|+++.| .+ ....++..+..+++|+.|++++| .
T Consensus 121 ~~L~L~~~~----l~~~~~~~l~~~~~L~~L~L~~~~~l----------------~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 121 QNLSLEGLR----LSDPIVNTLAKNSNLVRLNLSGCSGF----------------SEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp SEEECTTCB----CCHHHHHHHTTCTTCSEEECTTCBSC----------------CHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CEEeCcCcc----cCHHHHHHHhcCCCCCEEECCCCCCC----------------CHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 999998753 23455567788999999999877 22 11224445667889999999999 5
Q ss_pred CCCCCcCcchhhcCc-CccEEeEeCCC-CCC--CCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCc
Q 039822 547 GRRNVVPRNWVMSLT-NLRALVLKNCR-NCE--HLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPK 621 (711)
Q Consensus 547 ~~~~~~~~~~~~~l~-~L~~L~l~~~~-~l~--~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 621 (711)
.....+ +..+..++ +|++|++++|. .++ .++. +..+++|++|++++|..++..... .+..+++
T Consensus 181 l~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~l~~l~~ 248 (336)
T 2ast_B 181 FTEKHV-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNY 248 (336)
T ss_dssp CCHHHH-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCTT
T ss_pred cChHHH-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----------HHhCCCC
Confidence 543212 55677899 99999999995 343 3333 557889999999998754322211 1456799
Q ss_pred cceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCC-CCccEEEEecCcchhhh
Q 039822 622 LKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQK-TTLQRLDIHGCPIFEQR 690 (711)
Q Consensus 622 L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~-~~L~~l~l~~c~~l~~~ 690 (711)
|++|++++|..+..... ..+..+++|+.|++++| ++. .+..+ .+|+.|+++ |..++..
T Consensus 249 L~~L~l~~~~~~~~~~~-----~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~ 308 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETL-----LELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTI 308 (336)
T ss_dssp CCEEECTTCTTCCGGGG-----GGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCT
T ss_pred CCEeeCCCCCCCCHHHH-----HHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccc
Confidence 99999999875543221 13567999999999998 332 22222 346666775 4445543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=7.6e-15 Score=154.83 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=30.8
Q ss_pred cccccccCCcEEecCCCCCCcc-----CCccccCCccCceeccCCC
Q 039822 385 KTLCELYNLQRLDVTYCKNLEE-----LPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~ 425 (711)
..+..+++|++|+|++|. +.. ++..+.++++|++|++++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 345667889999999886 543 4455778999999999987
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=1.5e-13 Score=137.52 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=33.9
Q ss_pred cCCcEEecCCCCCCccCCc-cccCCccCceeccCCCCccccccc-cCCCccccCccCe
Q 039822 391 YNLQRLDVTYCKNLEELPP-GIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSR 446 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~ 446 (711)
.+|++|++++|. +..+|. .+.++++|++|++++| .+..++. .+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L 83 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLIL 83 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEEC
Confidence 357777777765 666554 5677777777777777 4555543 4555555555544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=138.58 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=80.3
Q ss_pred hccCCCCCccEEEEeccCCCCCC--cCcchhhcCcCccEEeEeCCCCCCCCCC-----CCCCCCCCeeeecccccceEe-
Q 039822 529 DALGPPPNLKNLAIRKYRGRRNV--VPRNWVMSLTNLRALVLKNCRNCEHLPP-----LGKLPSLEDLEVCRMESVKRV- 600 (711)
Q Consensus 529 ~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~-----~~~l~~L~~L~l~~~~~l~~l- 600 (711)
..+..+++|+.|+|++|...... ..+.++..+++|+.|++++| .++.++. ++.+++|++|+++++. ++..
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 240 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATV 240 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccc
Confidence 34555666777777766543210 10223356667777777776 4444443 2455677777777765 4433
Q ss_pred ccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEE
Q 039822 601 GHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLD 680 (711)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~ 680 (711)
|..+.. ...+++|++|++++ +.++.++.. + +++|+.|++++ ++++.+|. ...+++|+.|+
T Consensus 241 p~~~~~---------~~~~~~L~~L~Ls~-N~l~~lp~~------~--~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 241 NPSAPR---------CMWSSALNSLNLSF-AGLEQVPKG------L--PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CSCCSS---------CCCCTTCCCEECCS-SCCCSCCSC------C--CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEE
T ss_pred hhhHHh---------ccCcCcCCEEECCC-CCCCchhhh------h--cCCCCEEECCC-CcCCCCch-hhhCCCccEEE
Confidence 222211 11346788888877 356655443 2 37888888887 46777764 55678888888
Q ss_pred EecCcc
Q 039822 681 IHGCPI 686 (711)
Q Consensus 681 l~~c~~ 686 (711)
+++++-
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 887764
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=2.4e-15 Score=168.57 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=74.3
Q ss_pred CcEEEEEEEecCCCc----cc-----------ccccccCCcccEEEeccCCCCccccccchhhh-ccCccCCcCccc---
Q 039822 326 KKILHLMLTLYSGAL----VP-----------ISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFD-KLTCLRALKLKT--- 386 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~----~~-----------~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~--- 386 (711)
..++.+.+.++.... .| ......+++|++|++.+|... ...+..+. .+++|++|++..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCC
Confidence 368888888754211 11 112336889999999987422 12234443 688999999832
Q ss_pred ---------cccccCCcEEecCCCCCCcc-----CCccccCCccCceeccCCCC-cc--ccccccCCCccccCccCeeE
Q 039822 387 ---------LCELYNLQRLDVTYCKNLEE-----LPPGIGKLRKLMYLDNRWTH-SL--RFLSVGIGELIRLRGVSRFV 448 (711)
Q Consensus 387 ---------i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~-~l--~~lp~~i~~l~~L~~L~~~~ 448 (711)
+.++++|++|++++|. +.. ++.....+++|++|++++|. .+ ..++.-+..+++|+.|++..
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 1268899999999987 433 44444578899999999884 11 11222223457777776543
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=2.2e-13 Score=135.90 Aligned_cols=175 Identities=19% Similarity=0.242 Sum_probs=89.4
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHS 427 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 427 (711)
.+++|+.|.+.++. +..+ +.++.+++|++|++++|. +..+| .+.++++|++|++++| .
T Consensus 39 ~l~~L~~L~l~~~~----i~~~---------------~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~ 96 (272)
T 3rfs_A 39 ELNSIDQIIANNSD----IKSV---------------QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-Q 96 (272)
T ss_dssp HHTTCCEEECTTSC----CCCC---------------TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-C
T ss_pred cccceeeeeeCCCC----cccc---------------cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-c
Confidence 56777888877653 2122 234556666777777665 55544 4667777777777776 4
Q ss_pred ccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecC
Q 039822 428 LRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDL 506 (711)
Q Consensus 428 l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 506 (711)
+..+|.. +..+++|+.|++..+... ......+..++ +|+.|+++.|.+
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~----------------------------~L~~L~L~~n~l 145 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQ---SLPDGVFDKLT----------------------------NLTYLNLAHNQL 145 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCT----------------------------TCCEEECCSSCC
T ss_pred cCccChhHhcCCcCCCEEECCCCcCC---ccCHHHhccCC----------------------------CCCEEECCCCcc
Confidence 5555443 455555555544322111 11111223333 344444433333
Q ss_pred CCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCC
Q 039822 507 RDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLP 584 (711)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~ 584 (711)
...+ +..+..+++|+.|++++|.... .++..+..+++|+.|++++| .++.++. ++.++
T Consensus 146 ~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 146 QSLP-----------------KGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLT 205 (272)
T ss_dssp CCCC-----------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CccC-----------------HHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCc
Confidence 2221 1223445556666666655554 43444555566666666665 3444433 45556
Q ss_pred CCCeeeecccc
Q 039822 585 SLEDLEVCRME 595 (711)
Q Consensus 585 ~L~~L~l~~~~ 595 (711)
+|+.|++++++
T Consensus 206 ~L~~L~l~~N~ 216 (272)
T 3rfs_A 206 SLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 66666665553
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=1.8e-12 Score=134.45 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=52.9
Q ss_pred EEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCc-
Q 039822 331 LMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPP- 409 (711)
Q Consensus 331 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~- 409 (711)
+.-+++.+..+|..+. ++++.|+|++|. ++.+|. ..+.++++|++|+|++|...+.+|.
T Consensus 14 v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~----i~~i~~-------------~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLP---RNAIELRFVLTK----LRVIQK-------------GAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EEEESTTCCSCCTTCC---TTCSEEEEESCC----CSEECT-------------TSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred EEecCCCCCccCcCcC---CCCCEEEccCCc----CCCcCH-------------HHHcCCCCCCEEECcCCCCCCccChh
Confidence 3444455555665542 456677777652 333443 2345556666666666653344553
Q ss_pred cccCCccCceeccCCCCccccccc-cCCCccccCccCeeEec
Q 039822 410 GIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLG 450 (711)
Q Consensus 410 ~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~ 450 (711)
.+.+|++|+.+...+++.+..+|+ .+..+++|+.|++..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 345666666544443335555543 34566666666555443
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.2e-14 Score=151.27 Aligned_cols=192 Identities=18% Similarity=0.091 Sum_probs=88.6
Q ss_pred cccccCCcEEecCCCC--CCc-cCCccc-------cCCccCceeccCCCCcccc-----ccccCCCccccCccCeeEecc
Q 039822 387 LCELYNLQRLDVTYCK--NLE-ELPPGI-------GKLRKLMYLDNRWTHSLRF-----LSVGIGELIRLRGVSRFVLGG 451 (711)
Q Consensus 387 i~~L~~L~~L~l~~~~--~l~-~lP~~i-------~~L~~L~~L~l~~~~~l~~-----lp~~i~~l~~L~~L~~~~~~~ 451 (711)
+.++++|++|+|++|. .+. .+|..+ .++++|++|++++|. +.. +|..+..+++|+.|++..+..
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3445666666666652 111 233333 466666666666662 322 444444455555554432221
Q ss_pred cCCC-CcCcchhhcC---------ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCch
Q 039822 452 GNDR-ACGLESLKKL---------NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEE 521 (711)
Q Consensus 452 ~~~~-~~~~~~L~~l---------~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 521 (711)
.... ......+..+ ++|+.|.++++.-...........+..+++|+.|+++.|.+...
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~------------ 202 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE------------ 202 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH------------
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh------------
Confidence 1000 0011112222 55666666553210011111223455566666666666532211
Q ss_pred hhHHHHhh-ccCCCCCccEEEEeccCCC----CCCcCcchhhcCcCccEEeEeCCCCCCCC-----CC-C--CCCCCCCe
Q 039822 522 DEDERLLD-ALGPPPNLKNLAIRKYRGR----RNVVPRNWVMSLTNLRALVLKNCRNCEHL-----PP-L--GKLPSLED 588 (711)
Q Consensus 522 ~~~~~~~~-~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-----~~-~--~~l~~L~~ 588 (711)
....+.+ .+..+++|+.|+|++|... .. + +.++..+++|+.|++++|. ++.. +. + +.+++|+.
T Consensus 203 -g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~-l-~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 203 -GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-L-AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp -HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH-H-HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCE
T ss_pred -HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH-H-HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEE
Confidence 1111222 5556666777777666652 10 2 4455566666666666663 3321 11 2 33566666
Q ss_pred eeecccc
Q 039822 589 LEVCRME 595 (711)
Q Consensus 589 L~l~~~~ 595 (711)
|++++|.
T Consensus 279 L~L~~n~ 285 (386)
T 2ca6_A 279 LRLQYNE 285 (386)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 6666654
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=9.9e-13 Score=132.37 Aligned_cols=172 Identities=23% Similarity=0.180 Sum_probs=120.7
Q ss_pred cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhc
Q 039822 385 KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKK 464 (711)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 464 (711)
..+..+.+|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|+.|++..+... .+..+..
T Consensus 40 ~~~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~-----~~~~l~~ 110 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK-----DLSSLKD 110 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-----CGGGGTT
T ss_pred cchhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCC-----CChhhcc
Confidence 345677888888888875 777764 888888888888888 6666666 777777777765443322 2455777
Q ss_pred CccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEec
Q 039822 465 LNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRK 544 (711)
Q Consensus 465 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 544 (711)
+++|+.|++++.. +... ..+..+++|+.|+++.|.+... ..+..+++|+.|++++
T Consensus 111 l~~L~~L~L~~n~-i~~~-----~~l~~l~~L~~L~l~~n~l~~~-------------------~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKITDI-------------------TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CTTCCEEECTTSC-CCCC-----GGGGGCTTCCEEECCSSCCCCC-------------------GGGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCc-CCCC-----hhhcCCCCCCEEEccCCcCCcc-------------------hhhccCCCCCEEEccC
Confidence 7777777777642 2211 3466777888888877754432 2455677888888888
Q ss_pred cCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccc
Q 039822 545 YRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRME 595 (711)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~ 595 (711)
|.... . +. +..+++|+.|++++| .++.++.+..+++|+.|+++++.
T Consensus 166 N~l~~--~-~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 166 NQISD--I-VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCC--C-GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred Ccccc--c-hh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 87766 4 22 677888888888888 66777777888888888888765
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=1.6e-12 Score=143.76 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=89.7
Q ss_pred hhccCccCCcCc--------cccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCcc
Q 039822 373 FDKLTCLRALKL--------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGV 444 (711)
Q Consensus 373 ~~~l~~L~~L~l--------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 444 (711)
+..+.+|+.|++ +.++.|++|++|+|++|. +..+|. +.+|++|++|++++| .+..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~-------- 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLK-------- 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TST--------
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhc--------
Confidence 345555555555 344555555555555554 555544 555555555555555 344333 334
Q ss_pred CeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhH
Q 039822 445 SRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDED 524 (711)
Q Consensus 445 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 524 (711)
.+++|+.|+++++.- .. ...+..+++|+.|+++.|.+...
T Consensus 107 -------------------~l~~L~~L~Ls~N~l-~~-----l~~l~~l~~L~~L~Ls~N~l~~l--------------- 146 (605)
T 1m9s_A 107 -------------------DLKKLKSLSLEHNGI-SD-----INGLVHLPQLESLYLGNNKITDI--------------- 146 (605)
T ss_dssp -------------------TCTTCCEEECTTSCC-CC-----CGGGGGCTTCSEEECCSSCCCCC---------------
T ss_pred -------------------cCCCCCEEEecCCCC-CC-----CccccCCCccCEEECCCCccCCc---------------
Confidence 444444444443211 11 12344556666666665543322
Q ss_pred HHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccc
Q 039822 525 ERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRME 595 (711)
Q Consensus 525 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~ 595 (711)
..+..+++|+.|+|++|.... .++ +..+++|+.|+|++| .+..++.+..+++|+.|+|++|.
T Consensus 147 ----~~l~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 ----TVLSRLTKLDTLSLEDNQISD--IVP--LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----GGGGSCTTCSEEECCSSCCCC--CGG--GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred ----hhhcccCCCCEEECcCCcCCC--chh--hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 234556677777777776665 323 666777777777777 55666667777777777777665
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=135.02 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCCccEEEEeccCCCCCCcCcchhhcC---cCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccc
Q 039822 534 PPNLKNLAIRKYRGRRNVVPRNWVMSL---TNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRME 595 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~ 595 (711)
+++|+.|+|++|.... ..|..+..+ ++|+.|++++| .++.+|..- .++|++|++++|.
T Consensus 223 l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR 283 (310)
T ss_dssp TCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC
T ss_pred CCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc
Confidence 4455555555555444 212222222 45555555555 344444311 1455555555554
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=1.1e-11 Score=122.00 Aligned_cols=172 Identities=20% Similarity=0.214 Sum_probs=87.1
Q ss_pred cCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCC
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLR 469 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~ 469 (711)
...++++++++. +..+|..+. ++|+.|++++| .+..++. .+..+++|+.|++..+... ......+..+++|+
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELG 86 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCC
Confidence 456677777654 777776655 57777777777 4444433 4555555555544322111 11222233344444
Q ss_pred CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 470 ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 470 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
.|+++ .|.+...+ ...+..+++|+.|+|++|....
T Consensus 87 ~L~L~----------------------------~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~ 121 (251)
T 3m19_A 87 TLGLA----------------------------NNQLASLP-----------------LGVFDHLTQLDKLYLGGNQLKS 121 (251)
T ss_dssp EEECT----------------------------TSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECC----------------------------CCcccccC-----------------hhHhcccCCCCEEEcCCCcCCC
Confidence 44443 33332221 1233445555666665555554
Q ss_pred CCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeec
Q 039822 550 NVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKF 627 (711)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 627 (711)
+++..+..+++|+.|+++++ .++.++. ++.+++|++|+++++. ++.++... +..+++|+.|++
T Consensus 122 --~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~l 186 (251)
T 3m19_A 122 --LPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGA-----------FDRLGKLQTITL 186 (251)
T ss_dssp --CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEEC
T ss_pred --cChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHH-----------HhCCCCCCEEEe
Confidence 43444455566666666655 4444443 5555666666665554 43333211 234555666666
Q ss_pred cc
Q 039822 628 YD 629 (711)
Q Consensus 628 ~~ 629 (711)
++
T Consensus 187 ~~ 188 (251)
T 3m19_A 187 FG 188 (251)
T ss_dssp CS
T ss_pred eC
Confidence 55
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=2.9e-13 Score=141.20 Aligned_cols=213 Identities=15% Similarity=0.071 Sum_probs=107.7
Q ss_pred cccCCcEEecCCCCCCccCC-----ccccCCc-cCceeccCCCCccccc-cccCCCc-----cccCccCeeEecccCCCC
Q 039822 389 ELYNLQRLDVTYCKNLEELP-----PGIGKLR-KLMYLDNRWTHSLRFL-SVGIGEL-----IRLRGVSRFVLGGGNDRA 456 (711)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lP-----~~i~~L~-~L~~L~l~~~~~l~~l-p~~i~~l-----~~L~~L~~~~~~~~~~~~ 456 (711)
...+|++|+|++|. +...+ ..+.+++ +|++|++++| .+... +..+..+ ++|+.|++..+... .
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~---~ 94 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLS---Y 94 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG---G
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCC---h
Confidence 34558999999887 77766 5667888 8999999988 45443 3334333 56666655443322 2
Q ss_pred cCcch----hhcC-ccCCCeeecCcCCCCChhhhhHhhhcCC-CCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhc
Q 039822 457 CGLES----LKKL-NLLRACSIYGLGGVSDGGKAAKAELEKK-KYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDA 530 (711)
Q Consensus 457 ~~~~~----L~~l-~~L~~L~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 530 (711)
..... +..+ ++|+.|+++++.-...........+..+ ++|+.|++++|.+.... ...+...
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------------~~~l~~~ 161 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-------------SDELIQI 161 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-------------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-------------HHHHHHH
Confidence 22222 3333 5666666665321111111222234442 46666666666433221 1223333
Q ss_pred cCCCC-CccEEEEeccCCCCCCcCcch----hhcC-cCccEEeEeCCCCCCC-----CCC-CCC-CCCCCeeeecccccc
Q 039822 531 LGPPP-NLKNLAIRKYRGRRNVVPRNW----VMSL-TNLRALVLKNCRNCEH-----LPP-LGK-LPSLEDLEVCRMESV 597 (711)
Q Consensus 531 ~~~~~-~L~~L~L~~~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~l~~-----l~~-~~~-l~~L~~L~l~~~~~l 597 (711)
+..++ +|+.|+|++|.... ..+.. +..+ ++|+.|++++|. ++. ++. +.. .++|++|++++|. +
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l 237 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLAS--KNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-L 237 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-C
T ss_pred HhcCCccccEeeecCCCCch--hhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-C
Confidence 33333 67777776665544 21222 2233 466677776662 333 221 222 2366666666654 4
Q ss_pred eEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 598 KRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 598 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
+..+...... ....+++|+.|++++|
T Consensus 238 ~~~~~~~l~~-------~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 238 HGPSLENLKL-------LKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCCCHHHHHH-------TTTTTTTCSEEEEEHH
T ss_pred CcHHHHHHHH-------HHhcCCCccEEEeccC
Confidence 4433211110 0234566666666664
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=1.7e-11 Score=133.90 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=118.6
Q ss_pred cCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCC
Q 039822 391 YNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRA 470 (711)
Q Consensus 391 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~ 470 (711)
.+|++|++++|. +..+|..+. ++|++|++++| .+..+| ..+++|+.|++..+.... .+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~----ip----------- 116 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST----LP----------- 116 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC----CC-----------
T ss_pred CCccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC----cc-----------
Confidence 389999999876 888998774 88999999998 677777 335555555443221110 00
Q ss_pred eeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCC
Q 039822 471 CSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRN 550 (711)
Q Consensus 471 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 550 (711)
. +.. +|+.|+++.|.+...+ . .+++|+.|+|++|....
T Consensus 117 -----------------~-l~~--~L~~L~Ls~N~l~~lp------------------~---~l~~L~~L~Ls~N~l~~- 154 (571)
T 3cvr_A 117 -----------------E-LPA--SLKHLDVDNNQLTMLP------------------E---LPALLEYINADNNQLTM- 154 (571)
T ss_dssp -----------------C-CCT--TCCEEECCSSCCSCCC------------------C---CCTTCCEEECCSSCCSC-
T ss_pred -----------------h-hhc--CCCEEECCCCcCCCCC------------------C---cCccccEEeCCCCccCc-
Confidence 0 111 5666666666443322 1 35788888888888776
Q ss_pred CcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccC
Q 039822 551 VVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDM 630 (711)
Q Consensus 551 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 630 (711)
+ |. .+++|+.|++++| .++.+|.+. ++|+.|++++|. ++.++. +.. .+ ....+.|+.|++++
T Consensus 155 -l-p~---~l~~L~~L~Ls~N-~L~~lp~l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L-----~~~~~~L~~L~Ls~- 216 (571)
T 3cvr_A 155 -L-PE---LPTSLEVLSVRNN-QLTFLPELP--ESLEALDVSTNL-LESLPA-VPV--RN-----HHSEETEIFFRCRE- 216 (571)
T ss_dssp -C-CC---CCTTCCEEECCSS-CCSCCCCCC--TTCCEEECCSSC-CSSCCC-CC---------------CCEEEECCS-
T ss_pred -C-CC---cCCCcCEEECCCC-CCCCcchhh--CCCCEEECcCCC-CCchhh-HHH--hh-----hcccccceEEecCC-
Confidence 5 33 5678888888888 566677744 788888888875 666655 211 00 01123348888877
Q ss_pred cccccccccCccccccccCCcccEEeecCCCCCcCCCc
Q 039822 631 EELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD 668 (711)
Q Consensus 631 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 668 (711)
+.++.++.. +..+++|+.|++++|+.-..+|.
T Consensus 217 N~l~~lp~~------l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 217 NRITHIPEN------ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCCCCCGG------GGGSCTTEEEECCSSSCCHHHHH
T ss_pred CcceecCHH------HhcCCCCCEEEeeCCcCCCcCHH
Confidence 356655433 55688888888888543344443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=3.1e-13 Score=140.99 Aligned_cols=240 Identities=11% Similarity=0.005 Sum_probs=147.6
Q ss_pred ccchhhhccCccCCcCc--------------ccccccc-CCcEEecCCCCCCccC-CccccCC-----ccCceeccCCCC
Q 039822 368 VLPQLFDKLTCLRALKL--------------KTLCELY-NLQRLDVTYCKNLEEL-PPGIGKL-----RKLMYLDNRWTH 426 (711)
Q Consensus 368 ~lp~~~~~l~~L~~L~l--------------~~i~~L~-~L~~L~l~~~~~l~~l-P~~i~~L-----~~L~~L~l~~~~ 426 (711)
.+|..+...++|++|++ ..+.+++ +|++|+|++|. +... |..+..+ ++|++|++++|
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 34666666667999998 2244566 89999999986 6654 4556554 89999999999
Q ss_pred cccccc-cc----CCCc-cccCccCeeEecccCCCCcCcch----hhc-CccCCCeeecCcCCCCChhhhhHhhhcCCC-
Q 039822 427 SLRFLS-VG----IGEL-IRLRGVSRFVLGGGNDRACGLES----LKK-LNLLRACSIYGLGGVSDGGKAAKAELEKKK- 494 (711)
Q Consensus 427 ~l~~lp-~~----i~~l-~~L~~L~~~~~~~~~~~~~~~~~----L~~-l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~- 494 (711)
.+...+ .. +..+ ++|+.|++..+... ...... +.. .+.|+.|+++++.-...........+...+
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCC---cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 455443 32 3334 67777776554433 233333 333 258889998874221111234445556665
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCC-CCccEEEEeccCCCCCCc--Ccchhhc-CcCccEEeEeC
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPP-PNLKNLAIRKYRGRRNVV--PRNWVMS-LTNLRALVLKN 570 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~--~~~~~~~-l~~L~~L~l~~ 570 (711)
+|+.|++++|.+.... ...+...+..+ ++|+.|+|++|....... .+..+.. .++|+.|++++
T Consensus 168 ~L~~L~Ls~n~l~~~~-------------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 168 NVNSLNLRGNNLASKN-------------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp TCCEEECTTSCGGGSC-------------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cccEeeecCCCCchhh-------------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 8999999888654332 22334445555 599999999988655211 0222333 46899999999
Q ss_pred CCCCCCCCC------CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCc
Q 039822 571 CRNCEHLPP------LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDME 631 (711)
Q Consensus 571 ~~~l~~l~~------~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 631 (711)
| .++..+. +..+++|+.|++++|. +..+.......- ...+..+++|+.|++++++
T Consensus 235 N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l----~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 235 N-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKAL----GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp S-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHH----HTTSTTCCEEEEECTTSCB
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHH----HHHhccCCceEEEecCCCc
Confidence 8 4555432 5678899999999886 333322211000 0013467788888888743
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=3.5e-11 Score=118.29 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=120.0
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCC
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNC 574 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 574 (711)
+++.|+++.+.+.... ...+..+++|+.|+|++|.... .++..+..+++|+.|+++++ .+
T Consensus 36 ~l~~L~L~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS-----------------DATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp TCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTS-CC
T ss_pred CCCEEEccCCCcCccC-----------------HhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCC-cc
Confidence 4566666666544443 2457788999999999998887 65777889999999999999 56
Q ss_pred CCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCcc
Q 039822 575 EHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRL 652 (711)
Q Consensus 575 ~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 652 (711)
+.++. +..+++|++|+++++. ++.++... +..+++|++|+++++ .++.++. +.+..+++|
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L 157 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV-----------FDRLTKLKELRLNTN-QLQSIPA-----GAFDKLTNL 157 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTC
T ss_pred cccChhHhcccCCCCEEEcCCCc-CCCcChhH-----------hccCCcccEEECcCC-cCCccCH-----HHcCcCcCC
Confidence 67664 7889999999999986 76665532 346899999999985 6776653 346789999
Q ss_pred cEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 653 SFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 653 ~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
+.|++++ +.++.+|. .+..+++|+.|++++++.
T Consensus 158 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 158 QTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 9999999 47888876 567789999999998875
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=1.2e-11 Score=136.65 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=72.6
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCc--------cccccccCCcEEecCCCCCCccCCccccCCccCce
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL--------KTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMY 419 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l--------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 419 (711)
.+++|+.|++.+|. +..+| .++.+++|+.|+| ..++.+++|++|+|++|. +..+| .+..|++|++
T Consensus 41 ~L~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCC----CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCC----CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 68899999999874 33444 5899999999999 448899999999999986 88877 6999999999
Q ss_pred eccCCCCccccccccCCCccccCccCee
Q 039822 420 LDNRWTHSLRFLSVGIGELIRLRGVSRF 447 (711)
Q Consensus 420 L~l~~~~~l~~lp~~i~~l~~L~~L~~~ 447 (711)
|++++| .+..+| .+..+++|+.|++.
T Consensus 114 L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 114 LSLEHN-GISDIN-GLVHLPQLESLYLG 139 (605)
T ss_dssp EECTTS-CCCCCG-GGGGCTTCSEEECC
T ss_pred EEecCC-CCCCCc-cccCCCccCEEECC
Confidence 999999 566554 35566666666543
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=7.3e-14 Score=153.50 Aligned_cols=216 Identities=17% Similarity=0.148 Sum_probs=130.3
Q ss_pred cccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCc
Q 039822 387 LCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLN 466 (711)
Q Consensus 387 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~ 466 (711)
+..+++|+.|+|++|. ++.+|.++++|++|+.|++++|..+..+|..+. .++. ....+..+..++
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~~~--------~~~~~~~l~~l~ 409 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMR------ALDP--------LLYEKETLQYFS 409 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCT--------GGGHHHHHHHHH
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------hccc--------ccCCHHHHHHHH
Confidence 3567788888888876 888898899999999888876532222221110 0000 011233344444
Q ss_pred cCCCee-ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEecc
Q 039822 467 LLRACS-IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKY 545 (711)
Q Consensus 467 ~L~~L~-i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 545 (711)
+|+.|+ +.. .. +.+|..+.+..+ ....++ ...|+.|+|++|
T Consensus 410 ~L~~L~~l~~-n~--------------~~~L~~l~l~~n------------------~i~~l~-----~~~L~~L~Ls~n 451 (567)
T 1dce_A 410 TLKAVDPMRA-AY--------------LDDLRSKFLLEN------------------SVLKME-----YADVRVLHLAHK 451 (567)
T ss_dssp HHHHHCGGGH-HH--------------HHHHHHHHHHHH------------------HHHHHH-----HTTCSEEECTTS
T ss_pred hcccCcchhh-cc--------------cchhhhhhhhcc------------------cccccC-----ccCceEEEecCC
Confidence 444433 111 00 001111111111 111111 135888888888
Q ss_pred CCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccce
Q 039822 546 RGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKH 624 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 624 (711)
.... + |. +..+++|+.|++++| .++.+|. ++.+++|+.|+|+++. ++.+| . +..+++|+.
T Consensus 452 ~l~~--l-p~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~------------l~~l~~L~~ 512 (567)
T 1dce_A 452 DLTV--L-CH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-G------------VANLPRLQE 512 (567)
T ss_dssp CCSS--C-CC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G------------GTTCSSCCE
T ss_pred CCCC--C-cC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-c------------cCCCCCCcE
Confidence 8777 6 54 778888888888888 5667775 7788888888888876 55554 1 456788888
Q ss_pred eecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCC----CCCCccEEE
Q 039822 625 LKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLL----QKTTLQRLD 680 (711)
Q Consensus 625 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~----~~~~L~~l~ 680 (711)
|+++++ .++.+.. +..+..+++|+.|+++++ .++.+|.... .+++|+.|+
T Consensus 513 L~Ls~N-~l~~~~~----p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCNN-RLQQSAA----IQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCSS-CCCSSST----TGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCCC-CCCCCCC----cHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 888874 5655520 234778888999999884 5777665332 267777775
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=3.7e-11 Score=113.28 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=116.0
Q ss_pred cCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeC
Q 039822 491 EKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKN 570 (711)
Q Consensus 491 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 570 (711)
..+++|+.|+++.+.+...+ .+..+++|+.|++++|.... +..+..+++|+.|++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-------------------~l~~l~~L~~L~l~~n~~~~----~~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-------------------GIEYAHNIKDLTINNIHATN----YNPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-------------------TGGGCTTCSEEEEESCCCSC----CGGGTTCTTCCEEEEEC
T ss_pred hhcCCccEEeccCCCccChH-------------------HHhcCCCCCEEEccCCCCCc----chhhhcCCCCCEEEeEC
Confidence 34567888888887654332 45567899999999996554 45778899999999999
Q ss_pred CCCCCC--CCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCcccccccc
Q 039822 571 CRNCEH--LPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIII 648 (711)
Q Consensus 571 ~~~l~~--l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 648 (711)
| .++. .+.++.+++|++|++++|. ++..... .+..+++|++|++++|..+++++ .+..
T Consensus 98 n-~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~-----------~l~~l~~L~~L~L~~n~~i~~~~-------~l~~ 157 (197)
T 4ezg_A 98 K-DVTSDKIPNLSGLTSLTLLDISHSA-HDDSILT-----------KINTLPKVNSIDLSYNGAITDIM-------PLKT 157 (197)
T ss_dssp T-TCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHH-----------HHTTCSSCCEEECCSCTBCCCCG-------GGGG
T ss_pred C-ccCcccChhhcCCCCCCEEEecCCc-cCcHhHH-----------HHhhCCCCCEEEccCCCCccccH-------hhcC
Confidence 8 4543 5568899999999999986 4432121 14578999999999987677664 2678
Q ss_pred CCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCc
Q 039822 649 MPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 649 l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
+++|+.|++++| .++.++ .+..+++|+.|++++++
T Consensus 158 l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 158 LPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 999999999996 688887 67779999999999986
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=1.5e-11 Score=115.90 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=38.3
Q ss_pred cccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccC
Q 039822 387 LCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVS 445 (711)
Q Consensus 387 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 445 (711)
.+.+.+|++|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|+.|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~ 94 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLR 94 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEE
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEE
Confidence 3667888999999876 88888 6888999999999888 444333 344444444443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=2e-11 Score=122.71 Aligned_cols=168 Identities=21% Similarity=0.207 Sum_probs=110.6
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCc
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHS 427 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 427 (711)
.+++|++|++.+|.. ..++ .++.+++|++|++++|. +..+|. +.++++|++|++++| .
T Consensus 44 ~l~~L~~L~l~~~~i----~~~~---------------~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~ 101 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI----KSVQ---------------GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-K 101 (291)
T ss_dssp HHHTCCEEECTTSCC----CCCT---------------TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-C
T ss_pred hcCcccEEEccCCCc----ccCh---------------hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-c
Confidence 577888888887632 2222 34556667777777665 666665 677777777777776 4
Q ss_pred cccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCC
Q 039822 428 LRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLR 507 (711)
Q Consensus 428 l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 507 (711)
+..+|. +..+++|+.|++..+... .+..+..+++|+.|++++..- ... ..+..+++|+.|+++.|.+.
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~i~-----~~~~l~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSCCC-----CCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCC
T ss_pred CCCChh-hccCCCCCEEECCCCcCC-----CChhhcCCCCCCEEEccCCcC-Ccc-----hhhccCCCCCEEEccCCccc
Confidence 555443 556666666654333222 235566777777777776421 211 45677888888888888655
Q ss_pred CCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCC
Q 039822 508 DGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCR 572 (711)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 572 (711)
..+ .+..+++|+.|++++|.... + + .+..+++|+.|+++++.
T Consensus 170 ~~~-------------------~l~~l~~L~~L~L~~N~i~~--l-~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 DIV-------------------PLAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCG-------------------GGTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEEEEEEE
T ss_pred cch-------------------hhcCCCccCEEECCCCcCCC--C-h-hhccCCCCCEEECcCCc
Confidence 442 16678899999999998777 4 3 47789999999999883
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=6.6e-11 Score=116.97 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=107.0
Q ss_pred ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcC
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKL 465 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l 465 (711)
.+..+.+|++|++++|. +..+| .+..+++|++|++++| .+..+|. +..+++|+.|++..+.... +..
T Consensus 36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~-----l~~---- 102 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKN-----LNG---- 102 (263)
T ss_dssp CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSC-----CTT----
T ss_pred chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCC-----cCc----
Confidence 45677888888888875 88887 6888888999998888 6666666 6666666666543322111 000
Q ss_pred ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEecc
Q 039822 466 NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKY 545 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 545 (711)
+.. ++|+.|+++.|.+... +.+..+++|+.|++++|
T Consensus 103 ------------------------~~~-~~L~~L~L~~N~l~~~-------------------~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 103 ------------------------IPS-ACLSRLFLDNNELRDT-------------------DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp ------------------------CCC-SSCCEEECCSSCCSBS-------------------GGGTTCTTCCEEECTTS
T ss_pred ------------------------ccc-CcccEEEccCCccCCC-------------------hhhcCcccccEEECCCC
Confidence 111 4666666666644322 24667888999999998
Q ss_pred CCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEec
Q 039822 546 RGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVG 601 (711)
Q Consensus 546 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~ 601 (711)
.... + + .+..+++|+.|++++| .++.++.+..+++|+.|+++++. +...+
T Consensus 139 ~i~~--~-~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 139 KLKS--I-V-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp CCCB--C-G-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE-EECCC
T ss_pred cCCC--C-h-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc-ccCCc
Confidence 8777 4 3 6778999999999998 66667778889999999998876 44333
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.8e-10 Score=109.71 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=27.7
Q ss_pred CcEEecCCCCCCccCCccccCCccCceeccCCCCcccccccc-CCCccccCcc
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGV 444 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L 444 (711)
-+.++++++. +..+|..+ .++|++|++++| .+..+|.. +..+++|+.|
T Consensus 9 ~~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L 57 (208)
T 2o6s_A 9 GTTVECYSQG-RTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQL 57 (208)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCEEEecCCC-ccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEE
Confidence 3566666644 77777654 357788888777 45554433 3344444444
No 111
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.13 E-value=9.5e-10 Score=116.81 Aligned_cols=257 Identities=13% Similarity=0.044 Sum_probs=149.2
Q ss_pred CccHHHHHHHHhcChhhhcc-----CC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHHcC--Cce
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-----FE-KRIWVCVSDPFDEFRIARSIIEALTGSAPD-VAEFQSLMQHIQEFVE--GEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-----F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~r 71 (711)
|+||||||+++++ ..... |. .++|+......+...+++.++.+++...+. .....+....+.+.+. +++
T Consensus 62 G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 139 (412)
T 1w5s_A 62 GIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139 (412)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 8999999999998 33332 23 367888767778899999999998654332 2233445555555554 679
Q ss_pred EEEEEeCCCCCCc------cCchhhHhhhccC---C--CCCEEEEEecchhhhhhhC--------C-cCeEECCCCChhh
Q 039822 72 FLLVLDDVWNEDY------CKWEPFYYCLKNC---L--YGSKILITTRKETVACIMG--------S-TDVISVNVLSEME 131 (711)
Q Consensus 72 ~LlvlDdv~~~~~------~~~~~~~~~l~~~---~--~~s~iivTtR~~~~~~~~~--------~-~~~~~l~~L~~~e 131 (711)
++|||||++.-.. ..+..+...+... + ....+|+||+...+...+. . ...+.+++++.++
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 9999999965321 2222222222221 2 3445888988665432111 1 2249999999999
Q ss_pred HHHHHHHHh---cCCCCcchhhhHHHHHHHHHHhcC------CChHHHHHHHHH-h----c-CC--CCHHHHHHHHHhhh
Q 039822 132 CWSVFESLA---FFGNSMEERENLEKIGREIIRKCK------GLPLAAKTIASL-L----R-SK--NTEKEWKNILESEI 194 (711)
Q Consensus 132 a~~Lf~~~~---~~~~~~~~~~~~~~~~~~i~~~~~------g~Plai~~~a~~-l----~-~~--~~~~~w~~~l~~~~ 194 (711)
++++|...+ +.... .. .+.+..|++.++ |.|..+..+... . . .. -+.+.+..++...
T Consensus 220 ~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~- 293 (412)
T 1w5s_A 220 LYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN- 293 (412)
T ss_dssp HHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-
Confidence 999997653 22111 11 245677888888 999755544332 1 1 11 1222232222211
Q ss_pred hhhhhhcccc-hhhHHhhhhcCChhhhhHhhhhcCCC--CCcccCHHHHHHHH--HH---cCCcccCCCchHHHHHHHHH
Q 039822 195 WELEEVEKGL-LAPLMLSYYELPSKVKQCFAYCAVFP--KDHEILKYDLIELW--MA---QGYFSEKGYKEMKDIGEKYF 266 (711)
Q Consensus 195 ~~~~~~~~~i-~~~l~~sy~~L~~~~~~~~~~~~~f~--~~~~i~~~~l~~~w--~~---~g~~~~~~~~~~~~~~~~~l 266 (711)
. ...+...++.|+...+.++..++.+. .+..+....+...+ ++ .|. .+ . .......++
T Consensus 294 ---------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~l 359 (412)
T 1w5s_A 294 ---------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP---R-GYTQYHIYL 359 (412)
T ss_dssp ---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC---C-CHHHHHHHH
T ss_pred ---------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC---C-CHHHHHHHH
Confidence 1 23344566788888898888888653 23344454444333 11 121 11 1 123455679
Q ss_pred HHHHhcccccccc
Q 039822 267 NILASRSFFQDFA 279 (711)
Q Consensus 267 ~~L~~~sLl~~~~ 279 (711)
+.|.+.++|....
T Consensus 360 ~~L~~~gli~~~~ 372 (412)
T 1w5s_A 360 KHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHTTSEEEEC
T ss_pred HHHHhCCCEEeec
Confidence 9999999997654
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.11 E-value=1.8e-09 Score=111.88 Aligned_cols=265 Identities=9% Similarity=0.006 Sum_probs=146.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC------CHHHHHHHHHHHhcC----------------CCC--ChhhH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF------DEFRIARSIIEALTG----------------SAP--DVAEF 56 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~i~~~l~~----------------~~~--~~~~~ 56 (711)
|+|||||++++++. . .++|++..... +...+.+.+.+.+.. ... .....
T Consensus 41 G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (350)
T 2qen_A 41 RVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSL 113 (350)
T ss_dssp TSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCH
T ss_pred cCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchH
Confidence 89999999999873 2 27788765432 566666666665432 000 01234
Q ss_pred HHHHHHHHHHcCC-ceEEEEEeCCCCCCc---cCchhhHh---hhccCCCCCEEEEEecchhhhhhh-----------CC
Q 039822 57 QSLMQHIQEFVEG-EKFLLVLDDVWNEDY---CKWEPFYY---CLKNCLYGSKILITTRKETVACIM-----------GS 118 (711)
Q Consensus 57 ~~~~~~~~~~l~~-~r~LlvlDdv~~~~~---~~~~~~~~---~l~~~~~~s~iivTtR~~~~~~~~-----------~~ 118 (711)
++....+.+..+. ++++||+||++.... .....+.. .+.+..++.++|+|++...+...+ +.
T Consensus 114 ~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~ 193 (350)
T 2qen_A 114 REVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGR 193 (350)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTC
T ss_pred HHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccC
Confidence 4455555554442 389999999955321 01112222 222222478999999876432211 11
Q ss_pred -cCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHHhhhhhh
Q 039822 119 -TDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILESEIWEL 197 (711)
Q Consensus 119 -~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~~~~~~~ 197 (711)
...+.+.+|+.+|+.+++.......+... . .+.+..+++.++|+|+++..++..+....+...+...+. .
T Consensus 194 ~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~---~-- 264 (350)
T 2qen_A 194 IAGEVLVKPFDKDTSVEFLKRGFREVNLDV-P---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL---E-- 264 (350)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHHTTTCCC-C---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH---H--
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH---H--
Confidence 24789999999999999977542222211 1 235788999999999999999876532222222211110 0
Q ss_pred hhhcccchhhHHhhhhcCChhhhhHhhhhcCCCCCcccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhcccccc
Q 039822 198 EEVEKGLLAPLMLSYYELPSKVKQCFAYCAVFPKDHEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQD 277 (711)
Q Consensus 198 ~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~ 277 (711)
.....+...+.-.+.+ ++..+..+..+|. .. .....+....... .. .. .......+++.|.+.++|..
T Consensus 265 -~~~~~~~~~l~~l~~~-~~~~~~~l~~la~--g~--~~~~~l~~~~~~~-~~-~~----~~~~~~~~l~~L~~~gli~~ 332 (350)
T 2qen_A 265 -VAKGLIMGELEELRRR-SPRYVDILRAIAL--GY--NRWSLIRDYLAVK-GT-KI----PEPRLYALLENLKKMNWIVE 332 (350)
T ss_dssp -HHHHHHHHHHHHHHHH-CHHHHHHHHHHHT--TC--CSHHHHHHHHHHT-TC-CC----CHHHHHHHHHHHHHTTSEEE
T ss_pred -HHHHHHHHHHHHHHhC-ChhHHHHHHHHHh--CC--CCHHHHHHHHHHH-hC-CC----CHHHHHHHHHHHHhCCCEEe
Confidence 0000011111111112 6677888888887 22 3444444433221 10 11 12345678999999999975
Q ss_pred cccCCCccEEEEEechHHHHHH
Q 039822 278 FAKSGDGEIVCCKMHDLVHDFA 299 (711)
Q Consensus 278 ~~~~~~~~~~~~~mh~li~~~~ 299 (711)
. .+. +.-.|++++.+.
T Consensus 333 ~----~~~--y~~~~p~~~~~~ 348 (350)
T 2qen_A 333 E----DNT--YKIADPVVATVL 348 (350)
T ss_dssp E----TTE--EEESSHHHHHHH
T ss_pred c----CCE--EEEecHHHHHHH
Confidence 4 122 223477777665
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=2.7e-10 Score=112.54 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=85.4
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCC
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVES 609 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 609 (711)
.+..+++|+.|++++|.... . +. +..+++|+.|++++| .++.++.+.. ++|+.|++++|. ++.++.
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~--~-~~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N~-l~~~~~------- 123 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD--L-SP-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNNE-LRDTDS------- 123 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC--C-GG-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSSC-CSBSGG-------
T ss_pred HHhhCCCCCEEECCCCccCC--C-hh-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEccCCc-cCCChh-------
Confidence 34456778888888777666 4 22 667778888888877 5666666555 778888887775 544421
Q ss_pred CCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEecCcc
Q 039822 610 DTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 610 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~~ 686 (711)
+..+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.+ ..+..+++|+.|++++++-
T Consensus 124 ------l~~l~~L~~L~Ls~N-~i~~~~-------~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 124 ------LIHLKNLEILSIRNN-KLKSIV-------MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ------GTTCTTCCEEECTTS-CCCBCG-------GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred ------hcCcccccEEECCCC-cCCCCh-------HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcc
Confidence 346777888888774 455543 2556778888888874 56666 3556677788888877653
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.09 E-value=5.4e-10 Score=107.95 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=108.5
Q ss_pred CCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCC
Q 039822 534 PPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDT 611 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 611 (711)
+++|+.|+|++|.... .++..+..+++|+.|+++++ .++.++. +..+++|+.|+++++. ++.++...
T Consensus 39 ~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------- 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV------- 107 (229)
T ss_dssp CTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------
T ss_pred CCCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhH-------
Confidence 3789999999999888 65788899999999999999 5777775 7889999999999986 77665532
Q ss_pred CCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 612 DGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 612 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
+..+++|++|++++ +.++.++.. +..+++|+.|++++ ++++.+|. .+..+++|+.|+++++|.
T Consensus 108 ----~~~l~~L~~L~Ls~-N~l~~lp~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 108 ----FDRLVHLKELFMCC-NKLTELPRG------IERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ----TTTCTTCCEEECCS-SCCCSCCTT------GGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ----hCcchhhCeEeccC-CcccccCcc------cccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 34689999999998 467766544 77999999999999 58888885 467799999999998763
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=1.8e-10 Score=125.82 Aligned_cols=176 Identities=18% Similarity=0.136 Sum_probs=122.1
Q ss_pred CcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccc
Q 039822 350 KGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLR 429 (711)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 429 (711)
.+|++|++.+|. +..+|.. + +.+|++|+|++|. +..+| ..+++|++|++++| .+.
T Consensus 59 ~~L~~L~Ls~n~----L~~lp~~--------------l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 59 NQFSELQLNRLN----LSSLPDN--------------L--PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp TTCSEEECCSSC----CSCCCSC--------------C--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCS
T ss_pred CCccEEEeCCCC----CCccCHh--------------H--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCC
Confidence 378888888763 2234432 2 2579999999986 88898 56899999999998 677
Q ss_pred cccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCC
Q 039822 430 FLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDG 509 (711)
Q Consensus 430 ~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 509 (711)
.+|. +.. +|+.|++..+.... +.. .+++|+.|+++.|.+...
T Consensus 114 ~ip~-l~~--~L~~L~Ls~N~l~~-----lp~------------------------------~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 114 TLPE-LPA--SLKHLDVDNNQLTM-----LPE------------------------------LPALLEYINADNNQLTML 155 (571)
T ss_dssp CCCC-CCT--TCCEEECCSSCCSC-----CCC------------------------------CCTTCCEEECCSSCCSCC
T ss_pred Ccch-hhc--CCCEEECCCCcCCC-----CCC------------------------------cCccccEEeCCCCccCcC
Confidence 7887 544 55555443221110 000 245677777776654433
Q ss_pred CcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCC---
Q 039822 510 DEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSL--- 586 (711)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L--- 586 (711)
+ . .+++|+.|+|++|.... + |. +. ++|+.|++++| .++.+|.+.. +|
T Consensus 156 p------------------~---~l~~L~~L~Ls~N~L~~--l-p~-l~--~~L~~L~Ls~N-~L~~lp~~~~--~L~~~ 205 (571)
T 3cvr_A 156 P------------------E---LPTSLEVLSVRNNQLTF--L-PE-LP--ESLEALDVSTN-LLESLPAVPV--RNHHS 205 (571)
T ss_dssp C------------------C---CCTTCCEEECCSSCCSC--C-CC-CC--TTCCEEECCSS-CCSSCCCCC--------
T ss_pred C------------------C---cCCCcCEEECCCCCCCC--c-ch-hh--CCCCEEECcCC-CCCchhhHHH--hhhcc
Confidence 2 1 35799999999999887 6 44 44 89999999999 6778887443 77
Q ss_pred ----CeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCc
Q 039822 587 ----EDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDME 631 (711)
Q Consensus 587 ----~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 631 (711)
+.|++++|. ++.+|..+ ..+++|+.|++++++
T Consensus 206 ~~~L~~L~Ls~N~-l~~lp~~l------------~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 206 EETEIFFRCRENR-ITHIPENI------------LSLDPTCTIILEDNP 241 (571)
T ss_dssp --CCEEEECCSSC-CCCCCGGG------------GGSCTTEEEECCSSS
T ss_pred cccceEEecCCCc-ceecCHHH------------hcCCCCCEEEeeCCc
Confidence 999999986 77777643 358899999999864
No 116
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.08 E-value=5.1e-09 Score=108.74 Aligned_cols=263 Identities=11% Similarity=0.050 Sum_probs=146.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC-----CCHHHHHHHHHHHhcC-------------CC-----C------
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP-----FDEFRIARSIIEALTG-------------SA-----P------ 51 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~~l~~-------------~~-----~------ 51 (711)
|+|||+|++++++ +... .++|++.... .+.......+.+.+.. .. +
T Consensus 40 G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 114 (357)
T 2fna_A 40 RTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKF 114 (357)
T ss_dssp TSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEE
T ss_pred CCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEe
Confidence 8999999999997 3322 3688886643 3445555555444310 00 0
Q ss_pred -----ChhhHHHHHHHHHHHcCCceEEEEEeCCCCCCc---cCchhhHhhhccCCCCCEEEEEecchhhhhh--------
Q 039822 52 -----DVAEFQSLMQHIQEFVEGEKFLLVLDDVWNEDY---CKWEPFYYCLKNCLYGSKILITTRKETVACI-------- 115 (711)
Q Consensus 52 -----~~~~~~~~~~~~~~~l~~~r~LlvlDdv~~~~~---~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-------- 115 (711)
...........+.+..+ ++++|||||+..... .++..+...+.+...+.++|+|+|.......
T Consensus 115 ~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~ 193 (357)
T 2fna_A 115 NWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPE 193 (357)
T ss_dssp C-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTT
T ss_pred ccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCC
Confidence 01223444444444333 499999999955321 2333333333332347799999997653221
Q ss_pred --h-CC-cCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 039822 116 --M-GS-TDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLLRSKNTEKEWKNILE 191 (711)
Q Consensus 116 --~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~~w~~~l~ 191 (711)
. +. ...+.+.+|+.+|+.+++.......+... .. ...|++.++|+|+++..++..+....+...|....-
T Consensus 194 ~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~ 267 (357)
T 2fna_A 194 SPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL 267 (357)
T ss_dssp STTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH
Confidence 1 11 25789999999999999987542111111 11 167999999999999999887643333333321110
Q ss_pred hhhhhhhhhcccchhhHH-hhhh--cCChhhhhHhhhhcCCCCCcccCHHHHHHHHH-HcCCcccCCCchHHHHHHHHHH
Q 039822 192 SEIWELEEVEKGLLAPLM-LSYY--ELPSKVKQCFAYCAVFPKDHEILKYDLIELWM-AQGYFSEKGYKEMKDIGEKYFN 267 (711)
Q Consensus 192 ~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~~~~~~~~~f~~~~~i~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~l~ 267 (711)
. .....+...+. ..++ .+++..+..+..+|. +. +...+..... ..|. +. .......+++
T Consensus 268 ~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~ 330 (357)
T 2fna_A 268 E------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI--EI----SDSEIYNYLT 330 (357)
T ss_dssp H------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHH
Confidence 0 00001111111 1111 567788888888887 21 3444433211 1121 00 1234567899
Q ss_pred HHHhcccccccccCCCccEEEEE-echHHHHHH
Q 039822 268 ILASRSFFQDFAKSGDGEIVCCK-MHDLVHDFA 299 (711)
Q Consensus 268 ~L~~~sLl~~~~~~~~~~~~~~~-mh~li~~~~ 299 (711)
.|++.++|.... +. |. .|++++++.
T Consensus 331 ~L~~~gli~~~~----~~---y~f~~~~~~~~l 356 (357)
T 2fna_A 331 QLTKHSWIIKEG----EK---YCPSEPLISLAF 356 (357)
T ss_dssp HHHHTTSEEESS----SC---EEESSHHHHHHT
T ss_pred HHHhCCCEEecC----CE---EEecCHHHHHhh
Confidence 999999997542 22 34 577877653
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=2.6e-12 Score=141.23 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=20.4
Q ss_pred CcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCcc
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELI 439 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~ 439 (711)
|++|+|++|. +..+|. +++|++|++|++++| .+..+|..++.++
T Consensus 443 L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 486 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALR 486 (567)
T ss_dssp CSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred ceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchhhhcCC
Confidence 4455555443 444444 555555555555554 3334444333333
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=8.6e-10 Score=100.90 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred cCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceE-eccccccCCC
Q 039822 531 LGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKR-VGHEFLGVES 609 (711)
Q Consensus 531 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~ 609 (711)
...+++|+.|++++|......+ |..+..+++|+.|++++| .++.++.+..+++|++|++++|. ++. ++..
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------ 90 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENR-IFGGLDML------ 90 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCC-CCSCCCHH------
T ss_pred cCCcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCc-CchHHHHH------
Confidence 3456899999999999872225 677889999999999999 47777779999999999999987 544 3322
Q ss_pred CCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc----CCCCCCCccEEEEecCc
Q 039822 610 DTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD----HLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 610 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~l~~c~ 685 (711)
...+++|++|+++++ .++.++. ...+..+++|+.|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 91 ------~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 ------AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 235899999999996 5776542 123678999999999995 6888876 67779999999999997
Q ss_pred c
Q 039822 686 I 686 (711)
Q Consensus 686 ~ 686 (711)
.
T Consensus 159 ~ 159 (168)
T 2ell_A 159 D 159 (168)
T ss_dssp S
T ss_pred h
Confidence 5
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.01 E-value=1.4e-09 Score=104.34 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=106.3
Q ss_pred CCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCC-C-CCCCCCCCCeeeecccccceEeccccccCCCCCC
Q 039822 535 PNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHL-P-PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTD 612 (711)
Q Consensus 535 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 612 (711)
++|+.|+++++.... +++..+..+++|+.|+++++ .++.+ | .+..+++|++|+|+++. ++.++...
T Consensus 32 ~~l~~L~l~~n~i~~--i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-------- 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL-------- 99 (220)
T ss_dssp TTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT--------
T ss_pred cCCCEEECCCCcCCC--cCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH--------
Confidence 689999999999887 65668889999999999999 56665 3 38899999999999987 77666543
Q ss_pred CCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 613 GSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 613 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
+..+++|++|+++++ .++.++ +..+..+++|+.|++++ +.++.++. .+..+++|+.|+++++|.
T Consensus 100 ---f~~l~~L~~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 ---FEGLFSLQLLLLNAN-KINCLR-----VDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ---TTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ---ccCCCCCCEEECCCC-CCCEeC-----HHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 346899999999984 566554 33577899999999999 57888876 477799999999998874
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=2.8e-09 Score=101.31 Aligned_cols=130 Identities=24% Similarity=0.314 Sum_probs=104.1
Q ss_pred CCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCC
Q 039822 534 PPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDT 611 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 611 (711)
+++|+.|+++++.... .++..+..+++|+.|+++++ .++.++. +..+++|++|+++++. ++.++...
T Consensus 27 ~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~------- 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV------- 95 (208)
T ss_dssp CTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------
T ss_pred CCCCcEEEcCCCccCc--CChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhH-------
Confidence 4689999999998877 65667889999999999998 6777765 6789999999999886 66554432
Q ss_pred CCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCCCccEEEEecCc
Q 039822 612 DGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIHGCP 685 (711)
Q Consensus 612 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~~c~ 685 (711)
+..+++|++|+++++ .++.++. ..+..+++|+.|+++++ .++.+|.. +..+++|+.|++++++
T Consensus 96 ----~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 96 ----FDKLTQLKELALNTN-QLQSLPD-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ----TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ----hcCccCCCEEEcCCC-cCcccCH-----hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 347899999999884 5665543 23568999999999995 78888764 6779999999999864
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.98 E-value=2.6e-09 Score=102.41 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=77.8
Q ss_pred CcEEecCCCCCCccCCccccCCccCceeccCCCCccccccc-c-CCCccccCccCeeEecccCCCCcCcchhhcCccCCC
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV-G-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRA 470 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~ 470 (711)
-++++++++. ++.+|..+. ..+++|++++| .+..++. + +..+++|+.|++..+..
T Consensus 13 ~~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i------------------- 69 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKI------------------- 69 (220)
T ss_dssp TTEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCC-------------------
T ss_pred CCEeEeCCCC-cccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcC-------------------
Confidence 3688888865 888887664 35688999888 5555532 2 34444444443321110
Q ss_pred eeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCC
Q 039822 471 CSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRN 550 (711)
Q Consensus 471 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 550 (711)
.......+..+++|+.|+++.|.+...+ +..+..+++|+.|+|++|....
T Consensus 70 ------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~~- 119 (220)
T 2v70_A 70 ------------TDIEEGAFEGASGVNEILLTSNRLENVQ-----------------HKMFKGLESLKTLMLRSNRITC- 119 (220)
T ss_dssp ------------CEECTTTTTTCTTCCEEECCSSCCCCCC-----------------GGGGTTCSSCCEEECTTSCCCC-
T ss_pred ------------CEECHHHhCCCCCCCEEECCCCccCccC-----------------HhHhcCCcCCCEEECCCCcCCe-
Confidence 0111122334445555555555443332 2234455666666666665555
Q ss_pred CcCcchhhcCcCccEEeEeCCCCCCCC-C-CCCCCCCCCeeeecccc
Q 039822 551 VVPRNWVMSLTNLRALVLKNCRNCEHL-P-PLGKLPSLEDLEVCRME 595 (711)
Q Consensus 551 ~~~~~~~~~l~~L~~L~l~~~~~l~~l-~-~~~~l~~L~~L~l~~~~ 595 (711)
.++..+..+++|+.|+++++ .++.+ | .+..+++|+.|++++++
T Consensus 120 -~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 120 -VGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -BCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred -ECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 33455555666666666655 34433 2 25555566666655543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=6e-10 Score=102.78 Aligned_cols=138 Identities=18% Similarity=0.214 Sum_probs=110.0
Q ss_pred ccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceEeccccccCCC
Q 039822 530 ALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVES 609 (711)
Q Consensus 530 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 609 (711)
.+..+++|+.|++++|.... + +......++|+.|++++| .++.++.++.+++|++|++++|. ++.++...
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i-~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~----- 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--I-ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL----- 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--C-CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCH-----
T ss_pred hcCCcCCceEEEeeCCCCch--h-HHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcch-----
Confidence 45568899999999998876 5 554445559999999999 67777889999999999999987 77776543
Q ss_pred CCCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC----CCCCCCccEEEEecCc
Q 039822 610 DTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH----LLQKTTLQRLDIHGCP 685 (711)
Q Consensus 610 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~~~~L~~l~l~~c~ 685 (711)
+..+++|++|+++++ .+++++.- ..+..+++|+.|++++| .+..+|.. +..+++|+.|++++++
T Consensus 84 ------~~~l~~L~~L~L~~N-~i~~~~~~----~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 ------DQALPDLTELILTNN-SLVELGDL----DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ------HHHCTTCCEEECCSC-CCCCGGGG----GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ------hhcCCCCCEEECCCC-cCCcchhh----HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 246899999999985 56666531 13678999999999995 57788864 6779999999999997
Q ss_pred chhh
Q 039822 686 IFEQ 689 (711)
Q Consensus 686 ~l~~ 689 (711)
.-+.
T Consensus 152 ~~~~ 155 (176)
T 1a9n_A 152 LKER 155 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=2.7e-09 Score=103.03 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=81.2
Q ss_pred CcEEecCCCCCCccCCccccCCccCceeccCCCCccccc-cccCCCccccCccCeeEecccCCCCcCcchhhcCccCCCe
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFL-SVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRAC 471 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L 471 (711)
.+.++++++. +..+|..+. ++|++|++++| .+..+ |..+..+++|+.|++..+....
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------ 78 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGA------------------ 78 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC------------------
T ss_pred CCEeEccCCC-cCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCC------------------
Confidence 4566666644 667776554 67777777776 34433 3344445554444432211100
Q ss_pred eecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCC
Q 039822 472 SIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNV 551 (711)
Q Consensus 472 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 551 (711)
.....+..+++|+.|+++.|.+...+ ...+..+++|+.|+|++|....
T Consensus 79 -------------i~~~~~~~l~~L~~L~Ls~N~l~~l~-----------------~~~~~~l~~L~~L~Ls~N~l~~-- 126 (229)
T 3e6j_A 79 -------------LPVGVFDSLTQLTVLDLGTNQLTVLP-----------------SAVFDRLVHLKELFMCCNKLTE-- 126 (229)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCS--
T ss_pred -------------cChhhcccCCCcCEEECCCCcCCccC-----------------hhHhCcchhhCeEeccCCcccc--
Confidence 00011233444555555544433332 1234556777777777777665
Q ss_pred cCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 552 VPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 552 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
+ |..+..+++|+.|+++++ .++.++. +..+++|+.|++.+++
T Consensus 127 l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 127 L-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp C-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred c-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 5 566677777777777777 5555553 6667777777776654
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.97 E-value=1.5e-09 Score=103.95 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=92.2
Q ss_pred cEEecCCCCCCccCCccccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCee
Q 039822 394 QRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACS 472 (711)
Q Consensus 394 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 472 (711)
+.++++++. +..+|..+. ++|+.|++++| .+..+|. .+..+++|+.|++..+... ...
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~---~~~-------------- 72 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS---ELA-------------- 72 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCC---EEC--------------
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCC---CcC--------------
Confidence 566666654 777776554 56777777776 4555554 3555555555543222111 111
Q ss_pred ecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc
Q 039822 473 IYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV 552 (711)
Q Consensus 473 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 552 (711)
...+.++++|+.|+++.|.+...+ ...+..+++|+.|+|++|.... +
T Consensus 73 --------------~~~~~~l~~L~~L~Ls~N~l~~l~-----------------~~~f~~l~~L~~L~L~~N~l~~--~ 119 (220)
T 2v9t_B 73 --------------PDAFQGLRSLNSLVLYGNKITELP-----------------KSLFEGLFSLQLLLLNANKINC--L 119 (220)
T ss_dssp --------------TTTTTTCSSCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCC--C
T ss_pred --------------HHHhhCCcCCCEEECCCCcCCccC-----------------HhHccCCCCCCEEECCCCCCCE--e
Confidence 123344455555555555544333 2345667888888888888777 5
Q ss_pred CcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 553 PRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 553 ~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
++..+..+++|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 120 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5677888888999999888 5666654 7778889999988875
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=5.8e-10 Score=114.37 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=90.2
Q ss_pred hhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccc
Q 039822 528 LDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFL 605 (711)
Q Consensus 528 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~ 605 (711)
......+.++..+.+.+.-... ........+++|+.|+++++ .++.++. +..+++|+.|++.+. ++.++...+
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred hhcccCccccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHh
Confidence 3333445677777777653222 10111224788999999987 5777775 778889999999874 777776543
Q ss_pred cCCCCCCCCcccCCCccc-eeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEE
Q 039822 606 GVESDTDGSSVIAFPKLK-HLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLD 680 (711)
Q Consensus 606 ~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~ 680 (711)
.++++|+ .+.+.+ +++.+. ++.+..+++|+.|.+.+ ++++.++. .+..+++|+.|+
T Consensus 270 -----------~~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 270 -----------SNCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -----------TTCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred -----------hCChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3678898 998876 566664 33577899999999987 67888876 566678888775
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=4.1e-09 Score=100.98 Aligned_cols=131 Identities=13% Similarity=0.225 Sum_probs=105.0
Q ss_pred CCCccEEEEeccCCCCCCcC-cchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCC
Q 039822 534 PPNLKNLAIRKYRGRRNVVP-RNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESD 610 (711)
Q Consensus 534 ~~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 610 (711)
.+.++.|+|+++.... ++ +..+..+++|+.|+++++ .++.++. +..+++|++|+++++. ++.++...
T Consensus 31 ~~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------ 100 (220)
T 2v70_A 31 PQYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKM------ 100 (220)
T ss_dssp CTTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG------
T ss_pred CCCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhH------
Confidence 3567899999999877 42 356789999999999999 5776664 8899999999999987 66665543
Q ss_pred CCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC-CcCCCCCCCccEEEEecCcc
Q 039822 611 TDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL-PDHLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~L~~l~l~~c~~ 686 (711)
+..+++|++|+++++ .++.+. +..+..+++|+.|++++ +.++.+ |..+..+++|+.|++++++.
T Consensus 101 -----~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 -----FKGLESLKTLMLRSN-RITCVG-----NDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -----GTTCSSCCEEECTTS-CCCCBC-----TTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred -----hcCCcCCCEEECCCC-cCCeEC-----HhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 347899999999984 566553 33477899999999999 478777 56788899999999998874
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.91 E-value=1.6e-09 Score=112.69 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=114.6
Q ss_pred CCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccC-CCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCC
Q 039822 495 YLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALG-PPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRN 573 (711)
Q Consensus 495 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 573 (711)
.++.|+++.|.+...+ ...+. .+++|+.|+|++|.... +++..+..+++|+.|+|+++ .
T Consensus 40 ~l~~L~Ls~N~l~~l~-----------------~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~ 99 (361)
T 2xot_A 40 YTALLDLSHNNLSRLR-----------------AEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN-H 99 (361)
T ss_dssp TCSEEECCSSCCCEEC-----------------TTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-C
T ss_pred CCCEEECCCCCCCccC-----------------hhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCC-c
Confidence 3566666666544332 23454 78999999999999887 65677889999999999999 5
Q ss_pred CCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCc
Q 039822 574 CEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPR 651 (711)
Q Consensus 574 l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 651 (711)
++.++. +..+++|+.|+|+++. +..++... +..+++|++|++++ +.++.++.... .....+++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-----------~~~l~~L~~L~L~~-N~l~~l~~~~~--~~~~~l~~ 164 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNA-----------FEDMAQLQKLYLSQ-NQISRFPVELI--KDGNKLPK 164 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCS-SCCCSCCGGGT--C----CTT
T ss_pred CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHH-----------hCCcccCCEEECCC-CcCCeeCHHHh--cCcccCCc
Confidence 777765 7889999999999987 66664432 45789999999998 46776654300 00147999
Q ss_pred ccEEeecCCCCCcCCCc-CCCCCCC--ccEEEEecCcc
Q 039822 652 LSFLEIGGCRKLKALPD-HLLQKTT--LQRLDIHGCPI 686 (711)
Q Consensus 652 L~~L~l~~c~~l~~lp~-~~~~~~~--L~~l~l~~c~~ 686 (711)
|+.|++++ +.++.+|. .+..++. |+.|+++++|.
T Consensus 165 L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 165 LMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 99999999 57888885 3444555 48899998764
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.90 E-value=1.3e-09 Score=113.40 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCcEEecCCCCCCccCCcc-cc-CCccCceeccCCCCccccccc-cCCCccccCccCe
Q 039822 392 NLQRLDVTYCKNLEELPPG-IG-KLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSR 446 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP~~-i~-~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~ 446 (711)
.+++|+|++|. +..+|.. +. ++++|++|++++| .+..+|. .+..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 40 YTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 35555665544 5555443 22 5555666666555 4444442 2444444444443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=8.6e-10 Score=98.62 Aligned_cols=131 Identities=20% Similarity=0.261 Sum_probs=101.2
Q ss_pred CCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCCCCCCCCCCeeeecccccceE-eccccccCCCC
Q 039822 532 GPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPPLGKLPSLEDLEVCRMESVKR-VGHEFLGVESD 610 (711)
Q Consensus 532 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~ 610 (711)
..+++|+.|++++|......+ |..+..+++|+.|++++| .++.++.++.+++|++|++++|. ++. ++..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~------- 83 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL------- 83 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH-------
T ss_pred CCCccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH-------
Confidence 345789999999998872225 667789999999999999 67777779999999999999987 544 3322
Q ss_pred CCCCcccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc----CCCCCCCccEEEEec
Q 039822 611 TDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD----HLLQKTTLQRLDIHG 683 (711)
Q Consensus 611 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~l~~ 683 (711)
...+++|++|+++++ .++.++. +..+..+++|+.|++++| .++.+|. .+..+++|+.|++++
T Consensus 84 -----~~~l~~L~~L~ls~N-~i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 -----AEKCPNLTHLNLSGN-KIKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -----HHHCTTCCEEECTTS-CCCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -----hhhCCCCCEEECCCC-cCCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 235899999999985 4665531 123678999999999996 6787775 466688999998764
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=1.4e-09 Score=99.42 Aligned_cols=116 Identities=20% Similarity=0.107 Sum_probs=63.4
Q ss_pred CcEEEEEEEecCCC--cccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCC
Q 039822 326 KKILHLMLTLYSGA--LVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNL 393 (711)
Q Consensus 326 ~~~~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L 393 (711)
..++.|.+.++.+. .+|..+ ..+++|++|++.+|... .+ ..++.+++|++|++ ..++.+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~----~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLI----SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCC----CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCC----Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 46788888888776 566553 47888888888876432 22 34445555555555 112234555
Q ss_pred cEEecCCCCCCccCC--ccccCCccCceeccCCCCccccccc----cCCCccccCccCeeEe
Q 039822 394 QRLDVTYCKNLEELP--PGIGKLRKLMYLDNRWTHSLRFLSV----GIGELIRLRGVSRFVL 449 (711)
Q Consensus 394 ~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~~~~~ 449 (711)
++|++++|. +..+| ..+.++++|++|++++| .+..+|. .+..+++|+.|++..+
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 555555543 44443 34555555555555555 3444443 3444555555544433
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.87 E-value=2.6e-07 Score=96.87 Aligned_cols=258 Identities=12% Similarity=0.016 Sum_probs=148.9
Q ss_pred CccHHHHHHHHhcChhhhcc--------CCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHHcCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH--------FEKRIWVCVSDPF-DEFRIARSIIEALTGSAPD--VAEFQSLMQHIQEFVEG 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~--------F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~ 69 (711)
|+|||++|+.+++ ..... ...++|++..... +...++..++.++.+.... ..........+.+.+..
T Consensus 55 G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 132 (384)
T 2qby_B 55 GTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN 132 (384)
T ss_dssp TSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 8999999999998 33222 2356788877766 8888999999988433221 12234556667777776
Q ss_pred ceEEEEEeCCCCCCccCchhh-HhhhccCCCCCEEEEEecchhhhh----hh--CCcCeEECCCCChhhHHHHHHHHhcC
Q 039822 70 EKFLLVLDDVWNEDYCKWEPF-YYCLKNCLYGSKILITTRKETVAC----IM--GSTDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~-~~~l~~~~~~s~iivTtR~~~~~~----~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
++.+||||+++.-........ ...+.....+..+|+||+...... .. .....+.+++++.++..++|...+..
T Consensus 133 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~ 212 (384)
T 2qby_B 133 IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY 212 (384)
T ss_dssp SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 666999999955332221222 333332226788999998753211 11 11248999999999999999887531
Q ss_pred -CCCcchhhhHHHHHHHHHHhcC---CChH-HHHHHHHHh--cC---CCCHHHHHHHHHhhhhhhhhhcccchhhHHhhh
Q 039822 143 -GNSMEERENLEKIGREIIRKCK---GLPL-AAKTIASLL--RS---KNTEKEWKNILESEIWELEEVEKGLLAPLMLSY 212 (711)
Q Consensus 143 -~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~a~~l--~~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy 212 (711)
-......++ ....+++.++ |.|. |+..+..+. .. .-+.+.+..++.... ...+..++
T Consensus 213 ~~~~~~~~~~---~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~ 279 (384)
T 2qby_B 213 GLIKGTYDDE---ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAV 279 (384)
T ss_dssp TSCTTSCCSH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHH
T ss_pred hcccCCcCHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHH
Confidence 111111222 2445555555 8886 444443322 21 124555655554321 13455677
Q ss_pred hcCChhhhhHhhhhcCCCCC-cccCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhccccccccc
Q 039822 213 YELPSKVKQCFAYCAVFPKD-HEILKYDLIELWMAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAK 280 (711)
Q Consensus 213 ~~L~~~~~~~~~~~~~f~~~-~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~ 280 (711)
+.|+...+..+..++. ... ..+ .+......-..| ..+ ........++..|.+.++++....
T Consensus 280 ~~l~~~~~~~l~al~~-~~~~~~~-~~~~~~~~~~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 280 KALPFHYKLALRSLIE-SEDVMSA-HKMYTDLCNKFK-QKP----LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HSSCHHHHHHHHHHHT-CCBHHHH-HHHHHHHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HcCCHHHHHHHHHHHH-hcccChH-HHHHHHHHHHcC-CCC----CCHHHHHHHHHHHHhCCCEEEEec
Confidence 8888887777776665 111 111 111111111222 111 123456678999999999986543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.85 E-value=2.3e-10 Score=129.81 Aligned_cols=97 Identities=21% Similarity=0.139 Sum_probs=57.8
Q ss_pred cccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEEecCCCCCCccCCccccCC
Q 039822 344 SIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRLDVTYCKNLEELPPGIGKL 414 (711)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L 414 (711)
..+..++.|++|+|++|. +..+|..+.++++|++|+| ..+++|.+|++|+|++|. +..+|..+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~----l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ----IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ----CCCCCCEEECTTSC----CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred hhhccCCCCcEEECCCCC----CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 334466777777777653 2345555556666666666 345566666666666655 55666666666
Q ss_pred ccCceeccCCCCccccccccCCCccccCccCe
Q 039822 415 RKLMYLDNRWTHSLRFLSVGIGELIRLRGVSR 446 (711)
Q Consensus 415 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~ 446 (711)
++|++|+|++| .+..+|..++.|++|+.|++
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeC
Confidence 66666666666 55566666666666665554
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=2.5e-08 Score=102.16 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=162.3
Q ss_pred CcEEEEEEEecCCCccccccccc-CCcccEEEeccCCCCccccccchhhhc--cCccCCcCc--ccccc--------ccC
Q 039822 326 KKILHLMLTLYSGALVPISIWDN-VKGLRSLLVDCDEYSWSSEVLPQLFDK--LTCLRALKL--KTLCE--------LYN 392 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~lp~~~~~--l~~L~~L~l--~~i~~--------L~~ 392 (711)
..+..|.+.+.-... ....... +++|++|+|++|..... ...+..+.. +..++...+ ..+.+ +.+
T Consensus 25 ~~l~~L~l~g~i~~~-~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 25 NSITHLTLTGKLNAE-DFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHCSEEEEEEEECHH-HHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred CceeEEEEeccccHH-HHHHHHHhhccCeEEecCcceeEEe-cCccccccccccccccccccCHHHhcccccccccccCC
Confidence 356777777642211 1111113 78889999988743200 000111111 111222222 45666 899
Q ss_pred CcEEecCCCCCCccCCcc-ccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecc-cCCCCcCcchhhcCccCC
Q 039822 393 LQRLDVTYCKNLEELPPG-IGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGG-GNDRACGLESLKKLNLLR 469 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~-~~~~~~~~~~L~~l~~L~ 469 (711)
|+.|+|.+ +++.++.. +.+|++|+.|++.++ .+..++.. +..+.++..+....... ..........+..+..|+
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 99999987 48887654 788999999999988 55566654 45554444443211000 000000111122233333
Q ss_pred -CeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCC
Q 039822 470 -ACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGR 548 (711)
Q Consensus 470 -~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 548 (711)
.+.+... ..........-....++..+.+...- .......+. ..+++|+.|+|.++...
T Consensus 180 ~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l--------------~~~~~~~l~---~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 180 TTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKL--------------DNADFKLIR---DYMPNLVSLDISKTNAT 239 (329)
T ss_dssp EEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECC--------------CHHHHHHHH---HHCTTCCEEECTTBCCC
T ss_pred eeEEecCC---CcHHHHHhhcccCccccceEEEeeee--------------cHHHHHHHH---HhcCCCeEEECCCCCcc
Confidence 1333221 12222222222234566666665541 001111111 23689999999998877
Q ss_pred CCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCC-eeeecccccceEeccccccCCCCCCCCcccCCCcccee
Q 039822 549 RNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLE-DLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHL 625 (711)
Q Consensus 549 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L 625 (711)
. ++...+..+.+|+.|.+.++ ++.++. +..+++|+ .+.+.. +++.++... ..++++|+.|
T Consensus 240 ~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-----------F~~c~~L~~l 302 (329)
T 3sb4_A 240 T--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-----------FMGCDNLRYV 302 (329)
T ss_dssp E--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-----------TTTCTTEEEE
T ss_pred e--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-----------hhCCccCCEE
Confidence 7 65777889999999999985 777775 88899999 999987 588887654 3478899999
Q ss_pred ecccCcccccccccCccccccccCCcccEEe
Q 039822 626 KFYDMEELEEWDYGTAIKGEIIIMPRLSFLE 656 (711)
Q Consensus 626 ~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 656 (711)
++++ ++++.++.. .+..+++|+.|.
T Consensus 303 ~l~~-n~i~~I~~~-----aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATG-DKITTLGDE-----LFGNGVPSKLIY 327 (329)
T ss_dssp EECS-SCCCEECTT-----TTCTTCCCCEEE
T ss_pred EeCC-CccCccchh-----hhcCCcchhhhc
Confidence 9976 567766533 466778888765
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=5.7e-10 Score=99.80 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=54.9
Q ss_pred CcEEEEEEEecCCC--cccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCC
Q 039822 326 KKILHLMLTLYSGA--LVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKN 403 (711)
Q Consensus 326 ~~~~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~ 403 (711)
..++.+.+.++.+. .+|..+ ..+++|++|++.+|.... + ..++.+++|++|++++|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~----~---------------~~~~~l~~L~~L~Ls~n~- 75 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTS----I---------------ANLPKLNKLKKLELSDNR- 75 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCC----C---------------TTCCCCTTCCEEECCSSC-
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCC----c---------------hhhhcCCCCCEEECCCCc-
Confidence 35666666666665 455432 366677777776653211 1 234555666666666655
Q ss_pred Ccc-CCccccCCccCceeccCCCCcccccc--ccCCCccccCccCee
Q 039822 404 LEE-LPPGIGKLRKLMYLDNRWTHSLRFLS--VGIGELIRLRGVSRF 447 (711)
Q Consensus 404 l~~-lP~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~~~ 447 (711)
+.. +|..+.++++|++|++++| .+..+| ..++.+++|+.|++.
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECT
T ss_pred ccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCc
Confidence 444 5555555666666666666 344433 445555555555443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.76 E-value=3.5e-09 Score=97.60 Aligned_cols=60 Identities=22% Similarity=0.113 Sum_probs=37.0
Q ss_pred ccccccCCcEEecCCCCCCccCCccc-cCCccCceeccCCCCccccccc--cCCCccccCccCee
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGI-GKLRKLMYLDNRWTHSLRFLSV--GIGELIRLRGVSRF 447 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~~~ 447 (711)
.++.+++|++|++++|. +..+|..+ ..+++|++|++++| .+..+|. .+..+++|+.|++.
T Consensus 59 ~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred ccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEec
Confidence 45566677777777665 66666554 66777777777776 5555654 45555555555443
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.75 E-value=5.4e-07 Score=94.46 Aligned_cols=258 Identities=12% Similarity=0.033 Sum_probs=145.6
Q ss_pred CccHHHHHHHHhcChhhhcc------CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHHc--CCce
Q 039822 1 GIGKTTLAQLAYNNDDVKNH------FEKRIWVCVSDPFDEFRIARSIIEALTGSAPD-VAEFQSLMQHIQEFV--EGEK 71 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~------F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l--~~~r 71 (711)
|+|||++|+.+++ ..... -..++|++.....+...+...++.+++...+. .....+....+.+.+ .+++
T Consensus 54 G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 131 (387)
T 2v1u_A 54 GTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI 131 (387)
T ss_dssp TSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSE
T ss_pred CCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 8999999999998 33222 12467788888888999999999999654332 222444555566665 3568
Q ss_pred EEEEEeCCCCCCcc--CchhhHhhhc--cC---CCCCEEEEEecchhhhhhh-----CC-c-CeEECCCCChhhHHHHHH
Q 039822 72 FLLVLDDVWNEDYC--KWEPFYYCLK--NC---LYGSKILITTRKETVACIM-----GS-T-DVISVNVLSEMECWSVFE 137 (711)
Q Consensus 72 ~LlvlDdv~~~~~~--~~~~~~~~l~--~~---~~~s~iivTtR~~~~~~~~-----~~-~-~~~~l~~L~~~ea~~Lf~ 137 (711)
.+||||+++.-... ..+.+...+. .. ..+..+|.||+.......+ .. . ..+.+++++.++..+++.
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 99999999543221 1122222121 11 3466888888765322111 11 1 478899999999999998
Q ss_pred HHhcC--CCCcchhhhHHHHHHHHHHhcC---CChH-HHHHHHHHh---c--CC--CCHHHHHHHHHhhhhhhhhhcccc
Q 039822 138 SLAFF--GNSMEERENLEKIGREIIRKCK---GLPL-AAKTIASLL---R--SK--NTEKEWKNILESEIWELEEVEKGL 204 (711)
Q Consensus 138 ~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~a~~l---~--~~--~~~~~w~~~l~~~~~~~~~~~~~i 204 (711)
..+.. ... ...++. ...+++.++ |.|- ++..+..+. . +. -+.+.+..++....
T Consensus 212 ~~~~~~~~~~-~~~~~~---~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---------- 277 (387)
T 2v1u_A 212 TRAEEAFNPG-VLDPDV---VPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE---------- 277 (387)
T ss_dssp HHHHHHBCTT-TBCSSH---HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------
T ss_pred HHHHhhccCC-CCCHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------
Confidence 77532 111 112232 344555555 9993 333332221 1 11 13445554444321
Q ss_pred hhhHHhhhhcCChhhhhHhhhhc-CCCCCcccCHHHHHHHH----HHcCCcccCCCchHHHHHHHHHHHHHhcccccccc
Q 039822 205 LAPLMLSYYELPSKVKQCFAYCA-VFPKDHEILKYDLIELW----MAQGYFSEKGYKEMKDIGEKYFNILASRSFFQDFA 279 (711)
Q Consensus 205 ~~~l~~sy~~L~~~~~~~~~~~~-~f~~~~~i~~~~l~~~w----~~~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~ 279 (711)
...+.-++..++...+..+...+ .+.....+....+.+.. -..| ..+. ....+..+++.|...++++...
T Consensus 278 ~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 278 RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 12345567888888777766665 33222233344333322 1223 2221 2345667899999999998754
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.74 E-value=9.4e-09 Score=116.59 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=91.6
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc---------cccccccCCcEE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL---------KTLCELYNLQRL 396 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l---------~~i~~L~~L~~L 396 (711)
..++.|+++++.+..+|...+ .+++|++|+|++|. +..+|..|++|++|++|+| .++++|.+|++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~----l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNS----LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSC----CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCc----CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 578999999999999998888 99999999999874 3368899999999999999 568899999999
Q ss_pred ecCCCCCCccCCccccCCccCceeccCCCCccccccccCCC
Q 039822 397 DVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGE 437 (711)
Q Consensus 397 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 437 (711)
+|++|. +..+|..+++|++|++|+|++|.....+|..+..
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999986 8999999999999999999999544455655543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=95.43 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=68.4
Q ss_pred EEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCc----------cccccccCCcEEecC
Q 039822 330 HLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKL----------KTLCELYNLQRLDVT 399 (711)
Q Consensus 330 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l----------~~i~~L~~L~~L~l~ 399 (711)
.++.+++.+..+|.... ++|++|++.+|. +..+|..|.++++|++|+| ..+.++.+|++|+|+
T Consensus 14 ~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~----i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP---RDVTELYLDGNQ----FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCSSCCSCCC---TTCCEEECCSSC----CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCCcCCCCCC---CCCCEEECCCCc----CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 34555555666665443 567777777653 3345556666666666555 336667777777777
Q ss_pred CCCCCccCCc-cccCCccCceeccCCCCcccccccc-CCCccccCccCee
Q 039822 400 YCKNLEELPP-GIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRF 447 (711)
Q Consensus 400 ~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~ 447 (711)
+|. +..+|. .+.++++|++|++++| .+..+|.. +..+++|+.|++.
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECC
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeC
Confidence 765 666654 4777777888887777 56666654 5566666666543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.67 E-value=8.4e-08 Score=89.59 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=77.6
Q ss_pred cEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC-CCCCCCCCeeeecccccceEeccccccCCCCCCCCcc
Q 039822 538 KNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP-LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSV 616 (711)
Q Consensus 538 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 616 (711)
+.++++++.... + |..+ .++|+.|+++++ .++.+|. +..+++|+.|+++++. ++.++... +
T Consensus 13 ~~l~~~~~~l~~--i-p~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-----------f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKV--L-PKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS-----------F 74 (193)
T ss_dssp TEEECTTSCCSS--C-CSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-----------T
T ss_pred CEEEcCCCCCCc--C-CCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-----------c
Confidence 456666655555 4 3322 356777777776 4556653 6667777777777765 55444321 3
Q ss_pred cCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcc
Q 039822 617 IAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 617 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~ 686 (711)
..+++|++|++++ +.++.++. ..+..+++|+.|++++ +.++.+|. .+..+++|+.|+++++|.
T Consensus 75 ~~l~~L~~L~Ls~-N~l~~i~~-----~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 75 SNMTQLLTLILSY-NRLRCIPP-----RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCS-SCCCBCCT-----TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCC-CccCEeCH-----HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 3567777777777 34555442 2456777888888887 46777776 355677888888877654
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=2.4e-06 Score=89.62 Aligned_cols=260 Identities=15% Similarity=0.076 Sum_probs=148.5
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHHcC--CceEEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFDEFRIARSIIEALTGSAPD-VAEFQSLMQHIQEFVE--GEKFLLVL 76 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~r~Llvl 76 (711)
|+||||+|+.+++ ...... ..++|+......+...+...++..++...+. ..........+.+.+. +++.+|||
T Consensus 54 G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlil 131 (389)
T 1fnn_A 54 GTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVL 131 (389)
T ss_dssp TSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 8999999999997 443332 3567777777778889999999988643321 2233444445555443 56899999
Q ss_pred eCCCCCCccCchhhHhhhccCC----CCCEEEEEecchhhhhhhC-------CcCeEECCCCChhhHHHHHHHHhcCCC-
Q 039822 77 DDVWNEDYCKWEPFYYCLKNCL----YGSKILITTRKETVACIMG-------STDVISVNVLSEMECWSVFESLAFFGN- 144 (711)
Q Consensus 77 Ddv~~~~~~~~~~~~~~l~~~~----~~s~iivTtR~~~~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~- 144 (711)
|+++..+......+...+.... .+..||++|+......... ....+.+++++.++..+++...+....
T Consensus 132 DE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~ 211 (389)
T 1fnn_A 132 DDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 211 (389)
T ss_dssp ETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC
T ss_pred ECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC
Confidence 9996654334444444332211 3668888888764433222 123799999999999999987753210
Q ss_pred CcchhhhHHHHHHHHHHhc---------CCChHHHHHHHHH-hc-----CC--CCHHHHHHHHHhhhhhhhhhcccchhh
Q 039822 145 SMEERENLEKIGREIIRKC---------KGLPLAAKTIASL-LR-----SK--NTEKEWKNILESEIWELEEVEKGLLAP 207 (711)
Q Consensus 145 ~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~a~~-l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~ 207 (711)
....+ .+....+++.+ .|.|..+..+... .. +. -+.+....+.... ....
T Consensus 212 ~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~ 278 (389)
T 1fnn_A 212 EGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV----------LFGI 278 (389)
T ss_dssp TTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----------SCCC
T ss_pred CCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----------hhhh
Confidence 11111 23456677777 7887544433322 11 11 1222222222211 1122
Q ss_pred HHhhhhcCChhhhhHhhhhcCCC---CCcccCHHHHHHHHHH----cCCcccCCCchHHHHHHHHHHHHHhccccccccc
Q 039822 208 LMLSYYELPSKVKQCFAYCAVFP---KDHEILKYDLIELWMA----QGYFSEKGYKEMKDIGEKYFNILASRSFFQDFAK 280 (711)
Q Consensus 208 l~~sy~~L~~~~~~~~~~~~~f~---~~~~i~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~ 280 (711)
+.-.+..|+...+.++..++.+. .+..+....+...+.. .|. .+. .......++..|.+.++|.....
T Consensus 279 ~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 279 SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RPR----VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CCC----CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CCC----CHHHHHHHHHHHHhCCCeEEeee
Confidence 33446677777777776666543 2213444444443321 221 111 12445678999999999987654
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.63 E-value=2e-08 Score=93.91 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=16.0
Q ss_pred EEEEEecCCCcccccccccCCcccEEEeccC
Q 039822 330 HLMLTLYSGALVPISIWDNVKGLRSLLVDCD 360 (711)
Q Consensus 330 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (711)
.++++++.+..+|.... ..+++|++.+|
T Consensus 12 ~l~~s~~~l~~ip~~~~---~~l~~L~l~~n 39 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP---LHTTELLLNDN 39 (192)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSC
T ss_pred EEEcCCCCcCcCccCCC---CCCCEEECCCC
Confidence 45555555555665443 26666666665
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=1.3e-07 Score=88.40 Aligned_cols=123 Identities=14% Similarity=0.263 Sum_probs=58.7
Q ss_pred cEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC---CCCCCCCCeeeecccccceEeccccccCCCCCCCC
Q 039822 538 KNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP---LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGS 614 (711)
Q Consensus 538 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~---~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 614 (711)
+.++++++.... + |..+ ..+|+.|+++++ .++.++. ++.+++|++|+++++. ++.+...
T Consensus 11 ~~l~~s~~~l~~--i-p~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKE--I-PRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN----------- 72 (192)
T ss_dssp TEEECTTSCCSS--C-CSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-----------
T ss_pred CEEEcCCCCcCc--C-ccCC--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh-----------
Confidence 445555554444 3 2222 225555555555 3444432 4455556666665554 3333211
Q ss_pred cccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCC-CcCCCCCCCccEEEEecCc
Q 039822 615 SVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKAL-PDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 615 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~L~~l~l~~c~ 685 (711)
.+..+++|++|++++ +.++.++. ..+..+++|+.|+++++ +++.+ |..+..+++|+.|++++++
T Consensus 73 ~~~~l~~L~~L~Ls~-N~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 73 AFEGASHIQELQLGE-NKIKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTTTCTTCCEEECCS-CCCCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HcCCcccCCEEECCC-CcCCccCH-----HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 123455566666655 23443332 12445566666666653 34433 3345555666666665554
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=2.9e-07 Score=84.65 Aligned_cols=124 Identities=20% Similarity=0.246 Sum_probs=84.2
Q ss_pred ccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCC
Q 039822 537 LKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGS 614 (711)
Q Consensus 537 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 614 (711)
.+.++++++.... + |.. ..++|+.|+++++ .++.++. ++.+++|++|+++++. ++.++...
T Consensus 9 ~~~l~~~~~~l~~--~-p~~--~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTS--V-PTG--IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV---------- 71 (177)
T ss_dssp TTEEECCSSCCSS--C-CTT--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT----------
T ss_pred CCEEEecCCCCcc--C-CCC--CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhH----------
Confidence 4566666666555 4 322 2467888888887 4556654 5778888888888775 55554432
Q ss_pred cccCCCccceeecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCcC-CCCCCCccEEEEecCc
Q 039822 615 SVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIHGCP 685 (711)
Q Consensus 615 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~~c~ 685 (711)
+..+++|++|+++++ .++.++. ..+..+++|+.|+++++ .++.+|.. +..+++|+.|++++++
T Consensus 72 -~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 -FDKLTKLTILYLHEN-KLQSLPN-----GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCCCccCEEECCCC-CccccCH-----HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 346788888888874 4655442 23457888888888884 67788764 3568888888888776
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=2.3e-06 Score=89.59 Aligned_cols=258 Identities=13% Similarity=0.071 Sum_probs=140.3
Q ss_pred CccHHHHHHHHhcChhhhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHHcC--CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF---EKRIWVCVSDPFDEFRIARSIIEALTGSAPD-VAEFQSLMQHIQEFVE--GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~r~Ll 74 (711)
|+||||+|+.+++ .....+ ..++|+......+...+...++.+++...+. .....+....+.+.+. +++.+|
T Consensus 55 G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 132 (386)
T 2qby_A 55 GTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVI 132 (386)
T ss_dssp TSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEE
Confidence 8999999999998 454443 2567787766667778888887777543221 1223344445555443 458999
Q ss_pred EEeCCCCCC----ccCchhhHhhhcc-CCCCCEEEEEecchhhhhhhCC-------cCeEECCCCChhhHHHHHHHHhcC
Q 039822 75 VLDDVWNED----YCKWEPFYYCLKN-CLYGSKILITTRKETVACIMGS-------TDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 75 vlDdv~~~~----~~~~~~~~~~l~~-~~~~s~iivTtR~~~~~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
|+|+++... ...+..+...+.. ...+..+|+||+.......+.. ...+.+++++.++..+++...+..
T Consensus 133 ilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 133 VLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp EEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 999985422 2223333332321 2335677888887644322211 148999999999999999876431
Q ss_pred C-CCcchhhhHHHHHHHHHHhcC---CChHHH-HHHHHHhc-----C--CCCHHHHHHHHHhhhhhhhhhcccchhhHHh
Q 039822 143 G-NSMEERENLEKIGREIIRKCK---GLPLAA-KTIASLLR-----S--KNTEKEWKNILESEIWELEEVEKGLLAPLML 210 (711)
Q Consensus 143 ~-~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~a~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~ 210 (711)
. ......++ ....+++.++ |.|..+ ..+..+.. + .-+.+.+..++.... ...+.-
T Consensus 213 ~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~ 279 (386)
T 2qby_A 213 AFKPGVLPDN---VIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE----------RDRVRD 279 (386)
T ss_dssp HBCSSCSCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHH
T ss_pred hccCCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------hchHHH
Confidence 1 11111222 3444555555 998743 33322211 1 113444444433211 123455
Q ss_pred hhhcCChhhhhHhhhhcCCCC-C-cccCHHHHHHHH--HH--cCCcccCCCchHHHHHHHHHHHHHhccccccc
Q 039822 211 SYYELPSKVKQCFAYCAVFPK-D-HEILKYDLIELW--MA--QGYFSEKGYKEMKDIGEKYFNILASRSFFQDF 278 (711)
Q Consensus 211 sy~~L~~~~~~~~~~~~~f~~-~-~~i~~~~l~~~w--~~--~g~~~~~~~~~~~~~~~~~l~~L~~~sLl~~~ 278 (711)
.+..++...+..+..++.+.+ + ..+....+.+.. ++ .| ..+. .......+++.|.+.++|+..
T Consensus 280 ~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 280 IILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 667788777777766664222 1 122233332211 11 12 1111 123456678999999999764
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.58 E-value=3.6e-07 Score=84.01 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred cCCCCCccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccc
Q 039822 531 LGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRME 595 (711)
Q Consensus 531 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 595 (711)
+..+++|+.|++++|.... +++..+..+++|+.|+++++ .++.+|. +..+++|++|+++++.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQS--LPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCccCEEECCCCCccc--cCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 3455667777777666665 54555667777777777777 5555554 4567777777777664
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=2.1e-09 Score=101.27 Aligned_cols=110 Identities=19% Similarity=0.096 Sum_probs=62.9
Q ss_pred ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcC
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKL 465 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l 465 (711)
.++++++|++|++++|. +..+|..+..+++|++|++++| .+..+| .+..+++|+.|++..+.... ...+..+..+
T Consensus 65 ~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l 139 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNKITN--WGEIDKLAAL 139 (198)
T ss_dssp CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEECCC--HHHHHHHTTT
T ss_pred ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCcCCc--hhHHHHHhcC
Confidence 34556667777777665 6677766666777777777777 555565 46666666666655543322 0112356667
Q ss_pred ccCCCeeecCcCCCCC------hhhhhHhhhcCCCCCceEE
Q 039822 466 NLLRACSIYGLGGVSD------GGKAAKAELEKKKYLFYLR 500 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~------~~~~~~~~l~~~~~L~~L~ 500 (711)
++|+.|++.+..-... ........+..+++|+.|+
T Consensus 140 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777777765311000 0111222366777777765
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.56 E-value=6.2e-07 Score=87.23 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhh-h-hhCCcCeEECCCCChhhHHHHHHHHhcCCCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVA-C-IMGSTDVISVNVLSEMECWSVFESLAFFGNS 145 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 145 (711)
.+++.+||+||++.-....+..+...+.....+..+|+||+..... . .......+.+++++.++..+++...+...+.
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3567999999996655556666766666555678899998765322 1 1122468999999999999999887654333
Q ss_pred cchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 146 MEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
... .+....|++.++|.|..+..+...+
T Consensus 204 ~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 2346789999999999888776543
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=1.1e-08 Score=96.23 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=87.5
Q ss_pred ccccccCCcEEecCCCCCCccCCccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcC
Q 039822 386 TLCELYNLQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKL 465 (711)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l 465 (711)
.++++.+|++|++++|. +..+| .+.++++|++|++++| .+..+|..+..+++|+.|++..+.... +..+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~-----l~~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIAS-----LSGIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCC-----HHHHHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCc-----CCccccC
Confidence 46778899999999986 88899 8999999999999999 778899888888999999988775443 4478888
Q ss_pred ccCCCeeecCcCCCCChhhhhHhhhcCCCCCceEEEEeec
Q 039822 466 NLLRACSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDD 505 (711)
Q Consensus 466 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 505 (711)
++|+.|++++.. +... .....+..+++|+.|+++.|.
T Consensus 115 ~~L~~L~l~~N~-i~~~--~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNW--GEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEEE-CCCH--HHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCCc-CCch--hHHHHHhcCCCCCEEEecCCc
Confidence 999999998743 2221 122568889999999998883
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=4.5e-06 Score=87.29 Aligned_cols=229 Identities=11% Similarity=0.104 Sum_probs=128.5
Q ss_pred CCcEEecCCCCCCccCC-ccccCCccCceeccCCCCccccccccCCCccccCccCeeEecccCCCCcCcchhhcCccCCC
Q 039822 392 NLQRLDVTYCKNLEELP-PGIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRA 470 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~ 470 (711)
+|+.+.+.+ +++.++ ..+.+|.+|+.+++..+ .+..+|.+.-..++|+.+.+. .+........
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp----~~l~~I~~~a--------- 221 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP----VTLKEIGSQA--------- 221 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC----TTCCEECTTT---------
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC----CchheehhhH---------
Confidence 577777775 466665 34677888888888776 667777654334555444321 0001111222
Q ss_pred eeecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCC
Q 039822 471 CSIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRN 550 (711)
Q Consensus 471 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 550 (711)
|.++++|+.+.+..+ +...+ ..++.. .+|+.+.+... ...
T Consensus 222 -------------------F~~~~~L~~l~l~~~-l~~I~-----------------~~aF~~-~~L~~i~lp~~-i~~- 261 (401)
T 4fdw_A 222 -------------------FLKTSQLKTIEIPEN-VSTIG-----------------QEAFRE-SGITTVKLPNG-VTN- 261 (401)
T ss_dssp -------------------TTTCTTCCCEECCTT-CCEEC-----------------TTTTTT-CCCSEEEEETT-CCE-
T ss_pred -------------------hhCCCCCCEEecCCC-ccCcc-----------------cccccc-CCccEEEeCCC-ccE-
Confidence 333334443333211 00000 112223 46666666332 222
Q ss_pred CcCcchhhcCcCccEEeEeCCCC----CCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccce
Q 039822 551 VVPRNWVMSLTNLRALVLKNCRN----CEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKH 624 (711)
Q Consensus 551 ~~~~~~~~~l~~L~~L~l~~~~~----l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 624 (711)
++...+..+++|+.+.+.++.. ...++. +..+++|+.+.+.. +++.++...+ .++++|+.
T Consensus 262 -I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-----------~~c~~L~~ 327 (401)
T 4fdw_A 262 -IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-----------GGNRKVTQ 327 (401)
T ss_dssp -ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----------TTCCSCCE
T ss_pred -EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-----------cCCCCccE
Confidence 3355666778888888876521 123443 67788888888873 4777766543 36778999
Q ss_pred eecccCcccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCC-CCccEEEEecCcchhhhhhcccCCCCCcC
Q 039822 625 LKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQK-TTLQRLDIHGCPIFEQRCRKETGANWPML 702 (711)
Q Consensus 625 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~-~~L~~l~l~~c~~l~~~~~~~~~~~~~~~ 702 (711)
+.+.. +++.+.. +.+..+ +|+.|.+.++ .+..++. .+..+ ..+..|.+..-. .+.+. +...|...
T Consensus 328 l~lp~--~l~~I~~-----~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~--~a~~W~~f 394 (401)
T 4fdw_A 328 LTIPA--NVTQINF-----SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYK--NANGWRDF 394 (401)
T ss_dssp EEECT--TCCEECT-----TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHH--HSTTGGGG
T ss_pred EEECc--cccEEcH-----HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhh--hccchhhh
Confidence 98854 4665543 346677 9999999984 5666654 34445 478888886532 22332 33567654
Q ss_pred C
Q 039822 703 R 703 (711)
Q Consensus 703 ~ 703 (711)
+
T Consensus 395 ~ 395 (401)
T 4fdw_A 395 T 395 (401)
T ss_dssp G
T ss_pred h
Confidence 3
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.39 E-value=2.4e-07 Score=84.84 Aligned_cols=98 Identities=26% Similarity=0.270 Sum_probs=62.6
Q ss_pred EEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCccccccccCCcEEecCCCCCCccC
Q 039822 329 LHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEEL 407 (711)
Q Consensus 329 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~l 407 (711)
..+++.++.+..+|.... ++|++|++++|.+ ..+ |. .++++.+|++|+|++|. +..+
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l----~~~~~~--------------~~~~l~~L~~L~Ls~N~-l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQI----TKLEPG--------------VFDHLVNLQQLYFNSNK-LTAI 72 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCC----CCCCTT--------------TTTTCTTCCEEECCSSC-CCCC
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCc----cccCHH--------------HhcCCcCCCEEECCCCC-CCcc
Confidence 456777777777776653 7888888887643 223 33 34556667777777664 6666
Q ss_pred Ccc-ccCCccCceeccCCCCcccccccc-CCCccccCccCeeEe
Q 039822 408 PPG-IGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVL 449 (711)
Q Consensus 408 P~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~ 449 (711)
|.. +.++++|++|++++| .+..+|.. +..+++|+.|++..+
T Consensus 73 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 73 PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 655 366777777777776 56666654 566666666655443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.38 E-value=1.3e-05 Score=83.72 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=46.1
Q ss_pred cccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc---------cccccccCCcEEecCCCCCCccCCc
Q 039822 340 LVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL---------KTLCELYNLQRLDVTYCKNLEELPP 409 (711)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l---------~~i~~L~~L~~L~l~~~~~l~~lP~ 409 (711)
.++...|.++ +|+.+.+..+ +..+ ..+|.++ +|+.+.+ ..+.++.+|+.+++.++. +..+|.
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-----i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~ 197 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-----LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK-ITKLPA 197 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-----CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC-CSEECT
T ss_pred EehHhhcccC-CccEEEeCCC-----ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCc-ceEech
Confidence 3444455443 4666665432 2222 2334442 3554444 334555666666666543 666655
Q ss_pred cccCCccCceeccCCCCcccccccc-CCCccccCcc
Q 039822 410 GIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGV 444 (711)
Q Consensus 410 ~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L 444 (711)
..-.+.+|+.+.+.. .+..++.. +.++++|+.+
T Consensus 198 ~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 198 STFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp TTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCE
T ss_pred hhEeecccCEEEeCC--chheehhhHhhCCCCCCEE
Confidence 544456666666653 24444433 3444444444
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1e-05 Score=84.83 Aligned_cols=291 Identities=12% Similarity=0.069 Sum_probs=160.1
Q ss_pred CcEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc---------cccccccCCcE
Q 039822 326 KKILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL---------KTLCELYNLQR 395 (711)
Q Consensus 326 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l---------~~i~~L~~L~~ 395 (711)
..++.+.+. ..+..+...+|.+|++|+.+.+..+ +..+ ..+|.++..|+.+.+ ..+.++..++.
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-----VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-----ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 357777764 3456677777777788888877542 2233 345667777776665 12222322222
Q ss_pred EecCCCCCCccC-CccccCCccCceeccCCCCcccccccc-CCCccccCccCeeEecccCCCCcCcchhhcCccCCCeee
Q 039822 396 LDVTYCKNLEEL-PPGIGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSI 473 (711)
Q Consensus 396 L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 473 (711)
....+ +..+ ...+.++.+|+.+.+..+ +..++.+ +..+++|+.+.+... .....-..+..+..|+.+.+
T Consensus 145 ~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~----~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 145 TIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN----LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp ECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT----CCEECTTTTTTCTTCCBCCC
T ss_pred ccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC----ceEeCchhhccccccceeec
Confidence 22221 2222 234677888888888653 4555543 566777777654211 01111223334444444333
Q ss_pred cCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcC
Q 039822 474 YGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVP 553 (711)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 553 (711)
... .. ...........|+.+.+........ ...+..+.+|+.+.+...... ..
T Consensus 216 ~~~--~~----~i~~~~~~~~~l~~i~ip~~~~~i~------------------~~~f~~~~~l~~~~~~~~~~~---i~ 268 (394)
T 4fs7_A 216 PNS--LY----YLGDFALSKTGVKNIIIPDSFTELG------------------KSVFYGCTDLESISIQNNKLR---IG 268 (394)
T ss_dssp CTT--CC----EECTTTTTTCCCCEEEECTTCCEEC------------------SSTTTTCSSCCEEEECCTTCE---EC
T ss_pred CCC--ce----EeehhhcccCCCceEEECCCceecc------------------cccccccccceeEEcCCCcce---ee
Confidence 321 00 0111223345677766632200000 124556778888888654322 22
Q ss_pred cchhhcCcCccEEeEeCCCCCCCCC--CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCc
Q 039822 554 RNWVMSLTNLRALVLKNCRNCEHLP--PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDME 631 (711)
Q Consensus 554 ~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 631 (711)
...+..+..++.+...... ++ .+..+.+|+.+.+.. +++.++...+ .++.+|+.+.+..
T Consensus 269 ~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF-----------~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEAF-----------ESCTSLVSIDLPY-- 329 (394)
T ss_dssp SCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTTT-----------TTCTTCCEECCCT--
T ss_pred ccccccccccceeccCcee----ecccccccccccccccccc--ccceechhhh-----------cCCCCCCEEEeCC--
Confidence 4556677777777765541 22 255677888888754 3666665432 3567788888853
Q ss_pred ccccccccCccccccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecC
Q 039822 632 ELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGC 684 (711)
Q Consensus 632 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c 684 (711)
+++.+.. ..+..+.+|+.+.+.. .++.++. .+..+++|+.+++...
T Consensus 330 ~v~~I~~-----~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 LVEEIGK-----RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECT-----TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccEEhH-----HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 3555542 3466788888888865 3777765 5667888998888643
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.36 E-value=4.2e-06 Score=79.97 Aligned_cols=153 Identities=12% Similarity=-0.043 Sum_probs=90.8
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||++|+.+++ ....... ..+.+..+.......+...+........ ...+++.+||+||
T Consensus 48 G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~vliiDe 110 (226)
T 2chg_A 48 GTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP---------------IGGAPFKIIFLDE 110 (226)
T ss_dssp TSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC---------------STTCSCEEEEEET
T ss_pred CCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhcccC---------------CCccCceEEEEeC
Confidence 8999999999997 4433322 2333443333333222221111111000 1135789999999
Q ss_pred CCCCCccCchhhHhhhccCCCCCEEEEEecchhhh-h-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHH
Q 039822 79 VWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVA-C-IMGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIG 156 (711)
Q Consensus 79 v~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 156 (711)
++.........+...+.....+.++|+||+..... . .......+.+++++.++..+++.+.+...+.... .+..
T Consensus 111 ~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ 186 (226)
T 2chg_A 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGL 186 (226)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHH
T ss_pred hhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 96654444555666565555677899998765321 1 1122348899999999999999887643222211 2345
Q ss_pred HHHHHhcCCChHHHHHHH
Q 039822 157 REIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 157 ~~i~~~~~g~Plai~~~a 174 (711)
..+++.++|.|..+..+.
T Consensus 187 ~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 187 EALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 678889999998655443
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=2.1e-07 Score=83.74 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=36.8
Q ss_pred CCCccceeecccCcccccccccCcccccccc----CCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEecCcchhh
Q 039822 618 AFPKLKHLKFYDMEELEEWDYGTAIKGEIII----MPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIHGCPIFEQ 689 (711)
Q Consensus 618 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~~c~~l~~ 689 (711)
.+++|++|++++|..+++.... .+.. .++|+.|+|++|+++++--- .+..+++|+.|++++||.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4566666666666655544322 1222 23566666666666654211 233466777777777776665
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.1e-07 Score=83.76 Aligned_cols=93 Identities=10% Similarity=0.097 Sum_probs=71.2
Q ss_pred cCccEEeEeCCCCCC--CCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccc
Q 039822 561 TNLRALVLKNCRNCE--HLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDY 638 (711)
Q Consensus 561 ~~L~~L~l~~~~~l~--~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 638 (711)
-+|++|++++|. ++ .+..+..+++|+.|+|++|..+++-+....... -...++|++|++++|+++++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-------~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-------ENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-------HHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-------ccccCCCCEEEcCCCCcCCHHHH
Confidence 469999999996 54 355678999999999999998876654432210 00135899999999999987554
Q ss_pred cCccccccccCCcccEEeecCCCCCcCC
Q 039822 639 GTAIKGEIIIMPRLSFLEIGGCRKLKAL 666 (711)
Q Consensus 639 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l 666 (711)
. .+..+++|++|++++|+++++.
T Consensus 133 ~-----~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 I-----ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp H-----HGGGCTTCCEEEEESCTTCCCH
T ss_pred H-----HHhcCCCCCEEECCCCCCCCch
Confidence 3 2567999999999999999863
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.26 E-value=1.1e-06 Score=80.05 Aligned_cols=99 Identities=24% Similarity=0.207 Sum_probs=63.0
Q ss_pred EEEEEEecCCCcccccccccCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCC
Q 039822 329 LHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELP 408 (711)
Q Consensus 329 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP 408 (711)
+.++++++.+..+|.... +.|++|++++|.+ ..++. ..++++.+|++|+|++|. +..+|
T Consensus 12 ~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~i----~~~~~-------------~~~~~l~~L~~L~Ls~N~-l~~l~ 70 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP---TTTQVLYLYDNQI----TKLEP-------------GVFDRLTQLTRLDLDNNQ-LTVLP 70 (170)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSSCC----CCCCT-------------TTTTTCTTCSEEECCSSC-CCCCC
T ss_pred CEEEeCCCCcCccCccCC---CCCcEEEcCCCcC----CccCh-------------hhhcCcccCCEEECCCCC-cCccC
Confidence 456666777777776553 7788888887632 22321 234556677777777765 66666
Q ss_pred cc-ccCCccCceeccCCCCcccccccc-CCCccccCccCeeEe
Q 039822 409 PG-IGKLRKLMYLDNRWTHSLRFLSVG-IGELIRLRGVSRFVL 449 (711)
Q Consensus 409 ~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~~~~~ 449 (711)
.. +.++++|++|++++| .+..+|.. +..+++|+.|++..+
T Consensus 71 ~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 71 AGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 55 367777777777777 56666654 666677666665443
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.21 E-value=5.5e-06 Score=75.65 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=53.2
Q ss_pred cEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCc
Q 039822 538 KNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSS 615 (711)
Q Consensus 538 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 615 (711)
+.++++++.... + |..+ .++|+.|+++++ .++.++. ++.+++|++|+|+++. ++.++...
T Consensus 15 ~~l~~~~n~l~~--i-P~~~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~----------- 76 (174)
T 2r9u_A 15 TLVNCQNIRLAS--V-PAGI--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGV----------- 76 (174)
T ss_dssp SEEECCSSCCSS--C-CSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-----------
T ss_pred cEEEeCCCCCCc--c-CCCc--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhH-----------
Confidence 566666666555 4 3332 266677777766 4555432 5666666666666654 55444322
Q ss_pred ccCCCccceeecccCcccccccccCccccccccCCcccEEeecC
Q 039822 616 VIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLSFLEIGG 659 (711)
Q Consensus 616 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 659 (711)
+..+++|++|++++ +.++.++. +.+..+++|+.|++++
T Consensus 77 ~~~l~~L~~L~L~~-N~l~~l~~-----~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 77 FDKLTQLTQLDLND-NHLKSIPR-----GAFDNLKSLTHIYLYN 114 (174)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCT-----TTTTTCTTCSEEECCS
T ss_pred hCCcchhhEEECCC-CccceeCH-----HHhccccCCCEEEeCC
Confidence 12455666666655 34444332 1244566666666666
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.21 E-value=5.2e-06 Score=75.50 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=29.4
Q ss_pred ccEEEEeccCCCCCCcCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEec
Q 039822 537 LKNLAIRKYRGRRNVVPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVG 601 (711)
Q Consensus 537 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~ 601 (711)
.+.++++++.... + |..+ .++|+.|+++++ .++.++. +..+++|++|+++++. ++.++
T Consensus 11 ~~~l~~s~n~l~~--i-p~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~ 70 (170)
T 3g39_A 11 GTTVDCSGKSLAS--V-PTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP 70 (170)
T ss_dssp TTEEECTTSCCSS--C-CSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred CCEEEeCCCCcCc--c-CccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccC
Confidence 4556666655554 4 3222 255666666655 4444432 4555555555555554 44333
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=7.8e-05 Score=78.04 Aligned_cols=278 Identities=10% Similarity=0.050 Sum_probs=155.9
Q ss_pred CCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCcc---------ccccccCCcEEecCCCCCCccC
Q 039822 338 GALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKLK---------TLCELYNLQRLDVTYCKNLEEL 407 (711)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l~---------~i~~L~~L~~L~l~~~~~l~~l 407 (711)
+..+...+|.+|++|+.+.+.. .+..+ ..+|.++.+|+.++++ .+.++.+|+.+.+.. ++..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-----~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~--~l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-----TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPL--MLKSI 131 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-----TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCT--TCCEE
T ss_pred EeEhHHHHhhCCCCceEEEeCC-----CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccC--ceeee
Confidence 3446778888999999999964 24444 4568888888888872 233445555554443 13333
Q ss_pred Cc-cccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCeeecCcCCCCChhhh
Q 039822 408 PP-GIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRACSIYGLGGVSDGGKA 485 (711)
Q Consensus 408 P~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 485 (711)
.. .+.++..+....... ...+.. .+..+++|+.+.+.. . .....-..+..+.+|+.+.+.. ++. ..
T Consensus 132 ~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~---~-~~~I~~~~F~~c~~L~~i~l~~--~~~---~I 199 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPD---S-METLHNGLFSGCGKLKSIKLPR--NLK---II 199 (394)
T ss_dssp CTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCT---T-CCEECTTTTTTCTTCCBCCCCT--TCC---EE
T ss_pred cceeeecccccccccCcc---ccccchhhhcccCCCcEEecCC---c-cceeccccccCCCCceEEEcCC--Cce---Ee
Confidence 22 233443333333222 223332 356666776654421 1 1112223445566666655542 111 12
Q ss_pred hHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCcCcchhhcCcCccE
Q 039822 486 AKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVVPRNWVMSLTNLRA 565 (711)
Q Consensus 486 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 565 (711)
....+..+..|+.+.+..+... +........+|+.+.+..... . +....+..+.+|+.
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~~~-------------------i~~~~~~~~~l~~i~ip~~~~-~--i~~~~f~~~~~l~~ 257 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSLYY-------------------LGDFALSKTGVKNIIIPDSFT-E--LGKSVFYGCTDLES 257 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTCCE-------------------ECTTTTTTCCCCEEEECTTCC-E--ECSSTTTTCSSCCE
T ss_pred CchhhccccccceeecCCCceE-------------------eehhhcccCCCceEEECCCce-e--ccccccccccccee
Confidence 2245666777776654322100 011223457888888865321 1 22445667889999
Q ss_pred EeEeCCCCCCCCC--CCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccc
Q 039822 566 LVLKNCRNCEHLP--PLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIK 643 (711)
Q Consensus 566 L~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 643 (711)
+.+.... ..+. .+....+|+.+..... .++... ...+.+|+.+.+.. +++.+..
T Consensus 258 ~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~----~i~~~~-----------F~~~~~L~~i~l~~--~i~~I~~----- 313 (394)
T 4fs7_A 258 ISIQNNK--LRIGGSLFYNCSGLKKVIYGSV----IVPEKT-----------FYGCSSLTEVKLLD--SVKFIGE----- 313 (394)
T ss_dssp EEECCTT--CEECSCTTTTCTTCCEEEECSS----EECTTT-----------TTTCTTCCEEEECT--TCCEECT-----
T ss_pred EEcCCCc--ceeeccccccccccceeccCce----eecccc-----------cccccccccccccc--ccceech-----
Confidence 9987652 2333 3566677777766442 233322 33577888888853 4555542
Q ss_pred cccccCCcccEEeecCCCCCcCCCc-CCCCCCCccEEEEe
Q 039822 644 GEIIIMPRLSFLEIGGCRKLKALPD-HLLQKTTLQRLDIH 682 (711)
Q Consensus 644 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~l~ 682 (711)
..+..+.+|+.+.|.+ .++.|+. .+..+.+|+.+++.
T Consensus 314 ~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 3466888999999864 4777765 56678888888874
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1.5e-05 Score=81.11 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=90.5
Q ss_pred CccHHHHHHHHhcChhhhcc-CC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FE-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlD 77 (711)
|+|||++|+.+++ ..... +. .+++++.+....... .+.++..+.... ..+ .+++.++|+|
T Consensus 52 G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~--------------~~~~~~~~~viiiD 114 (323)
T 1sxj_B 52 GIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQKK--------------LHLPPGKHKIVILD 114 (323)
T ss_dssp TSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBC--------------CCCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHHHHhcc--------------ccCCCCCceEEEEE
Confidence 8999999999998 43222 21 234443333222221 122222211000 012 3568999999
Q ss_pred CCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHH
Q 039822 78 DVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKI 155 (711)
Q Consensus 78 dv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 155 (711)
|++.-.....+.+...+.....++++|+||+... +... ......+++++++.++..+++...+...+.... .+.
T Consensus 115 e~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~ 190 (323)
T 1sxj_B 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDG 190 (323)
T ss_dssp SGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHH
T ss_pred CcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHH
Confidence 9976554455666666655556778888887643 2111 123458999999999999999887643222111 234
Q ss_pred HHHHHHhcCCChH-HHHHHHH
Q 039822 156 GREIIRKCKGLPL-AAKTIAS 175 (711)
Q Consensus 156 ~~~i~~~~~g~Pl-ai~~~a~ 175 (711)
+..+++.++|.|. |+..+..
T Consensus 191 ~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 191 LEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 6778999999995 4454433
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=6.3e-07 Score=92.04 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=9.8
Q ss_pred chhhcCccCCCeeecC
Q 039822 460 ESLKKLNLLRACSIYG 475 (711)
Q Consensus 460 ~~L~~l~~L~~L~i~~ 475 (711)
.++.++++|+.|.+.+
T Consensus 133 ~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGD 148 (362)
T ss_dssp TTHHHHTTCSEEEECC
T ss_pred HhhhhcchhhheeecC
Confidence 3455666777776654
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.01 E-value=2.6e-05 Score=79.33 Aligned_cols=146 Identities=17% Similarity=0.095 Sum_probs=83.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ .... ..+++..........+. ..+...+ .++.+|++|++.
T Consensus 48 GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~---------------------~~l~~~~-~~~~~l~lDEi~ 100 (324)
T 1hqc_A 48 GLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLA---------------------AILANSL-EEGDILFIDEIH 100 (324)
T ss_dssp TCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHH---------------------HHHTTTC-CTTCEEEETTTT
T ss_pred CCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHH---------------------HHHHHhc-cCCCEEEEECCc
Confidence 8999999999987 3322 23344433322221111 1111111 345688999996
Q ss_pred CCCccCchhhHhhhccC------------------CCCCEEEEEecchhhh-hh-hCC-cCeEECCCCChhhHHHHHHHH
Q 039822 81 NEDYCKWEPFYYCLKNC------------------LYGSKILITTRKETVA-CI-MGS-TDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~------------------~~~s~iivTtR~~~~~-~~-~~~-~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
.........+...+... .++..+|.||...... .. ... ...+.+++++.+|..+++...
T Consensus 101 ~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 101 RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRD 180 (324)
T ss_dssp SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHH
Confidence 54433333343333221 0245677777644211 11 111 358899999999999999887
Q ss_pred hcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 039822 140 AFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIASLL 177 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 177 (711)
+...+.... .+....+++.+.|.|-.+..+...+
T Consensus 181 ~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 181 ARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 654332221 2446778899999998887766554
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.98 E-value=2.4e-05 Score=80.45 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeecccCcccccccccCccccccccCCccc
Q 039822 574 CEHLPPLGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYDMEELEEWDYGTAIKGEIIIMPRLS 653 (711)
Q Consensus 574 l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 653 (711)
++.+|.+..+++|+.|+|+++..++.++... +..+++|+.|+|+++ +|+.++. +.+..+++|+
T Consensus 21 l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~-----------~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~l~~L~ 83 (347)
T 2ifg_A 21 LDSLHHLPGAENLTELYIENQQHLQHLELRD-----------LRGLGELRNLTIVKS-GLRFVAP-----DAFHFTPRLS 83 (347)
T ss_dssp CTTTTTSCSCSCCSEEECCSCSSCCEECGGG-----------SCSCCCCSEEECCSS-CCCEECT-----TGGGSCSCCC
T ss_pred CCccCCCCCCCCeeEEEccCCCCCCCcChhH-----------hccccCCCEEECCCC-ccceeCH-----HHhcCCcCCC
Confidence 4444444444455555555422244444321 224455555555552 3444331 2244555555
Q ss_pred EEeecCCCCCcCCCcCCCCCCCccEEEEecCc
Q 039822 654 FLEIGGCRKLKALPDHLLQKTTLQRLDIHGCP 685 (711)
Q Consensus 654 ~L~l~~c~~l~~lp~~~~~~~~L~~l~l~~c~ 685 (711)
.|+|++ ++++.+|........|+.|++.+++
T Consensus 84 ~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred EEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 555555 3455555432222225555555443
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00051 Score=71.76 Aligned_cols=101 Identities=7% Similarity=0.040 Sum_probs=61.6
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc---------cccccccCCcEE
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL---------KTLCELYNLQRL 396 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l---------~~i~~L~~L~~L 396 (711)
.+..+.+.. .+..+...+|.+|++|+.+.+..+.. ..+..+ ..+|..+.+|+.+.+ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p-~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKP-SCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCC-CCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCC-CeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccc
Confidence 366676653 46667778888899999998876421 123333 355777777777666 334556777777
Q ss_pred ecCCCCCCccCCc-cccCCccCceeccCCCCccccccc
Q 039822 397 DVTYCKNLEELPP-GIGKLRKLMYLDNRWTHSLRFLSV 433 (711)
Q Consensus 397 ~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~ 433 (711)
.+.. .+..++. .+..+.+|+.+.+..+ +..+..
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~ 176 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEE 176 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECT
T ss_pred cccc--eeeeecccceecccccccccccce--eeEecc
Confidence 7754 2444433 3566777777776543 444443
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=5.7e-06 Score=84.88 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=36.8
Q ss_pred CCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCCc--CcchhhcCcCccEEeEe
Q 039822 492 KKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNVV--PRNWVMSLTNLRALVLK 569 (711)
Q Consensus 492 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~l~~L~~L~l~ 569 (711)
.+++|+.|.+..|.+.+. ....+. ....+++|+.|+|+.|....... ....+..+++|+.|+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-------------~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-------------VVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-------------HHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCCCcCEEeCCCCCCchH-------------HHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 467788888876632110 111122 22346788888887765443100 02233467888888888
Q ss_pred CC
Q 039822 570 NC 571 (711)
Q Consensus 570 ~~ 571 (711)
+|
T Consensus 316 ~n 317 (362)
T 2ra8_A 316 YN 317 (362)
T ss_dssp SB
T ss_pred CC
Confidence 77
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.76 E-value=2.6e-05 Score=80.21 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=60.5
Q ss_pred EEEEec-CCCcccccccccCCcccEEEecc-CCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCC
Q 039822 331 LMLTLY-SGALVPISIWDNVKGLRSLLVDC-DEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELP 408 (711)
Q Consensus 331 l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP 408 (711)
++..+. .+..+|. +..+++|+.|+|++ |. +..+|. ..+++|.+|++|+|++|. +..+|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~----l~~~~~-------------~~~~~l~~L~~L~l~~N~-l~~~~ 72 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQH----LQHLEL-------------RDLRGLGELRNLTIVKSG-LRFVA 72 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSS----CCEECG-------------GGSCSCCCCSEEECCSSC-CCEEC
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCC----CCCcCh-------------hHhccccCCCEEECCCCc-cceeC
Confidence 345555 6667777 44788899999985 53 333442 235566777777777765 66654
Q ss_pred c-cccCCccCceeccCCCCccccccccCCCccccCccCeeE
Q 039822 409 P-GIGKLRKLMYLDNRWTHSLRFLSVGIGELIRLRGVSRFV 448 (711)
Q Consensus 409 ~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~~~~ 448 (711)
. .+.+|++|++|+|++| .+..+|..+.....|+.|++.+
T Consensus 73 ~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp TTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCS
T ss_pred HHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeC
Confidence 4 4577777777777777 5666766543333355555443
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=9.9e-05 Score=75.02 Aligned_cols=104 Identities=9% Similarity=-0.024 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhh-hhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETV-ACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++.++|+|+++.-.....+.+...+.....+.++|+||....- .... .....+.+++++.++..+++...+...+..
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56889999999665555566666666655567889988876432 1111 123478999999999999998776544332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIASL 176 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 176 (711)
.. .+....|++.++|.|..+..+...
T Consensus 189 ~~----~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 189 LT----EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 22 234567888899999865554433
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.67 E-value=4.6e-06 Score=86.34 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred hhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCC
Q 039822 488 AELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRR 549 (711)
Q Consensus 488 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 549 (711)
..+...++|+.|++++|.+... ....+...+...++|+.|+|++|.+..
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~-------------g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDT-------------AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHH-------------HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHhcCCCcCeEECCCCCCCHH-------------HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3445555666666666643211 222334444455666777776665443
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.55 E-value=8.1e-05 Score=71.86 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=81.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ ........++|++.....+.. .. ..+.+ .++.+||+||++
T Consensus 62 G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~~----------------~~--------~~~~~-~~~~vliiDe~~ 114 (242)
T 3bos_A 62 KSGRTHLIHAACA--RANELERRSFYIPLGIHASIS----------------TA--------LLEGL-EQFDLICIDDVD 114 (242)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGSC----------------GG--------GGTTG-GGSSEEEEETGG
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHHH----------------HH--------HHHhc-cCCCEEEEeccc
Confidence 8999999999998 444444466777754421100 00 00011 346789999995
Q ss_pred CCCccC--chhhHhhhccC-CCC-CEEEEEecchh---------hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcc
Q 039822 81 NEDYCK--WEPFYYCLKNC-LYG-SKILITTRKET---------VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSME 147 (711)
Q Consensus 81 ~~~~~~--~~~~~~~l~~~-~~~-s~iivTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 147 (711)
...... ...+...+... ..+ .++|+||+... +...+.....+.+++++.++..+++...+...+...
T Consensus 115 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~ 194 (242)
T 3bos_A 115 AVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL 194 (242)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 543222 23333332211 112 25888887432 111111236899999999999999988764332211
Q ss_pred hhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 148 ERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 148 ~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
. .+....+++.++|.+-.+..+.
T Consensus 195 ~----~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 195 P----EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp C----HHHHHHHHHHTTTCHHHHHHHH
T ss_pred C----HHHHHHHHHHccCCHHHHHHHH
Confidence 1 2345678888888876665443
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.52 E-value=0.00045 Score=71.58 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hh-hhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VA-CIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++.++|+|++..-+....+.+...+.....+..+|++|.... +. ........+++++++.++..+++...+...+..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999966554455666666655555677787776543 21 122234689999999999999998765332221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
.. .+.+..|++.++|.|..+....
T Consensus 198 ~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 2346778999999998776554
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0012 Score=65.64 Aligned_cols=136 Identities=11% Similarity=-0.036 Sum_probs=78.0
Q ss_pred CccHHHHHHHHhcChhhhcc-----CC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc---CCc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-----FE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV---EGE 70 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-----F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l---~~~ 70 (711)
|+|||++|+.++++ .... .. .+++|......+...++..|++++.+.........+....+.+.+ +++
T Consensus 55 GTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~ 132 (318)
T 3te6_A 55 DSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKR 132 (318)
T ss_dssp SHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSC
T ss_pred CCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCC
Confidence 89999999999984 4321 11 345666667778899999999999654322222223333333333 466
Q ss_pred eEEEEEeCCCCCCccCchhhHhhhc--cCC-CCCEEEEEecchhhh---------hhhCCcCeEECCCCChhhHHHHHHH
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYYCLK--NCL-YGSKILITTRKETVA---------CIMGSTDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~~l~--~~~-~~s~iivTtR~~~~~---------~~~~~~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+++++||.++.-. .-+.+...+. ... ....||.++...+.. ..++ ...+..++++.+|-.+++..
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHH
T ss_pred ceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHH
Confidence 8999999994432 2222222222 111 122334444433211 1111 14688999999999999987
Q ss_pred Hhc
Q 039822 139 LAF 141 (711)
Q Consensus 139 ~~~ 141 (711)
++.
T Consensus 210 Rl~ 212 (318)
T 3te6_A 210 RLK 212 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.45 E-value=1.5e-05 Score=82.54 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=19.1
Q ss_pred ccCCcEEecCCCCCCcc-----CCcccc-CCccCceeccCCC
Q 039822 390 LYNLQRLDVTYCKNLEE-----LPPGIG-KLRKLMYLDNRWT 425 (711)
Q Consensus 390 L~~L~~L~l~~~~~l~~-----lP~~i~-~L~~L~~L~l~~~ 425 (711)
+.+|++|+|++|. +.. +...+. +.++|+.|++++|
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 111 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC 111 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC
Confidence 3566777777765 432 112222 2356777777776
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.41 E-value=0.00024 Score=75.02 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=86.9
Q ss_pred CccHHHHHHHHhcChhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE--KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+||||||+.+++ .....+. .+++++... +...+...+.... ...+.+.++.+.-+|++||
T Consensus 140 G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~---------~~~~~~~~~~~~~vL~IDE 202 (440)
T 2z4s_A 140 GLGKTHLLQSIGN--YVVQNEPDLRVMYITSEK------FLNDLVDSMKEGK---------LNEFREKYRKKVDILLIDD 202 (440)
T ss_dssp SSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHH------HHHHHHHHHHTTC---------HHHHHHHHTTTCSEEEEEC
T ss_pred CCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHH------HHHHHHHHHHccc---------HHHHHHHhcCCCCEEEEeC
Confidence 8999999999998 5655553 345554332 3334444443211 1123334443677999999
Q ss_pred CCCCCc--cCchhhHhhhcc-CCCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 79 VWNEDY--CKWEPFYYCLKN-CLYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 79 v~~~~~--~~~~~~~~~l~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+..-.. ..-..+...+.. ...|..||+||... .+...+.....+.+++++.++-.+++.+.+...+..
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~ 282 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE 282 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 954322 112223333221 12467899998752 222223334678999999999999998876432221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
. ++ +....|++.+.|.+-.+..+
T Consensus 283 i-~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 283 L-PE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp C-CT---THHHHHHHHCCSCHHHHHHH
T ss_pred C-CH---HHHHHHHHhcCCCHHHHHHH
Confidence 1 11 23556778888887655433
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.37 E-value=0.0012 Score=67.04 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|+++..+....+.+...+.....+..+|++|.+.+ +... ......+.+++++.++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM- 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC-
Confidence 5678899999966555555666666665555677777776643 3322 2334689999999999999987765 11
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
+ .+.+..+++.++|.|..+..+
T Consensus 183 --~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 183 --S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred --C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 123467889999999665443
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.35 E-value=0.00095 Score=67.34 Aligned_cols=102 Identities=7% Similarity=-0.083 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhh-hCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACI-MGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++.++|+|++..-.....+.+...+.....+.++|+||.... +... ......+++++++.++..+++...+...+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5688999999965444444556555555455778888886543 2211 1233589999999999999998776543332
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
.. .+....+++.++|.+..+....
T Consensus 181 i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 IT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp BC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2345678889999987654443
No 176
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.92 E-value=0.0039 Score=64.57 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=18.9
Q ss_pred cEEEEEEEecCCCcccccccccCCcccEEEec
Q 039822 327 KILHLMLTLYSGALVPISIWDNVKGLRSLLVD 358 (711)
Q Consensus 327 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (711)
+++.+.+. ..+..++..+|.+|.+|+.+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEEC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeC
Confidence 45555553 33455666666677777777765
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.0024 Score=65.52 Aligned_cols=103 Identities=8% Similarity=0.045 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +.. .......+++++++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4667999999966444444555555554445678888886532 222 22234689999999999999998776432221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
... .+.+..|++.++|.+-.+..+.
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 110 1335678888899886554443
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0074 Score=61.73 Aligned_cols=101 Identities=8% Similarity=0.003 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhhhh-CCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VACIM-GSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+++-++++|++..-.......+...+.......++|++|.... +.... .....+.+++++.++....+...+...+..
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567999999855444444555555554445667787775432 21111 123478899999999999998876433321
Q ss_pred chhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
.. .+....|++.++|.|..+...
T Consensus 212 i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 212 CD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 21 234677889999998764443
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.75 E-value=0.0074 Score=62.82 Aligned_cols=284 Identities=9% Similarity=0.075 Sum_probs=145.9
Q ss_pred CcEEEEEEEec---CCCcccccccccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc---------cccccccC
Q 039822 326 KKILHLMLTLY---SGALVPISIWDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL---------KTLCELYN 392 (711)
Q Consensus 326 ~~~~~l~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l---------~~i~~L~~ 392 (711)
..++.+.+..+ .+..+...+|..|..|+.+.+..+ +..+ ...|..+.+|+.+.+ ..+..+.+
T Consensus 87 ~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-----~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 87 TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-----VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYS 161 (394)
T ss_dssp TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-----CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTT
T ss_pred ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-----cceehhhhhhhhcccccccccceeeeecccceecccc
Confidence 46788887654 355677888888999988877642 3333 355788888888888 34566788
Q ss_pred CcEEecCCCCCCccCCccccCCccCceeccCCCCccccccc-cCCCccccCccCeeEecccCCCCcCcchhhcCccCCCe
Q 039822 393 LQRLDVTYCKNLEELPPGIGKLRKLMYLDNRWTHSLRFLSV-GIGELIRLRGVSRFVLGGGNDRACGLESLKKLNLLRAC 471 (711)
Q Consensus 393 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~l~~L~~L 471 (711)
|+.+.+.+ ++..+....-...+|+.+.+... +..+.. .+.....|............... . +-.-......
T Consensus 162 L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 233 (394)
T 4gt6_A 162 LHTVTLPD--SVTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDN-V---LYEKSANGDY 233 (394)
T ss_dssp CCEEECCT--TCCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSS-C---EEEECTTSCE
T ss_pred cccccccc--eeeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccccc-e---eecccccccc
Confidence 99998875 36666655545567887777543 222222 23333333322111000000000 0 0000000000
Q ss_pred eecCcCCCCChhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEEEEeccCCCCCC
Q 039822 472 SIYGLGGVSDGGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNLAIRKYRGRRNV 551 (711)
Q Consensus 472 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 551 (711)
.+. .......+..+.+... +... -..++..+.+|+.+.+..... .
T Consensus 234 ~~~--------------~~~~~~~~~~~~ip~~-v~~i-----------------~~~aF~~c~~L~~i~lp~~~~-~-- 278 (394)
T 4gt6_A 234 ALI--------------RYPSQREDPAFKIPNG-VARI-----------------ETHAFDSCAYLASVKMPDSVV-S-- 278 (394)
T ss_dssp EEE--------------ECCTTCCCSEEECCTT-EEEE-----------------CTTTTTTCSSCCEEECCTTCC-E--
T ss_pred ccc--------------ccccccccceEEcCCc-ceEc-----------------ccceeeecccccEEecccccc-e--
Confidence 000 0001111122111000 0000 012455667777777654322 1
Q ss_pred cCcchhhcCcCccEEeEeCCCCCCCCCC--CCCCCCCCeeeecccccceEeccccccCCCCCCCCcccCCCccceeeccc
Q 039822 552 VPRNWVMSLTNLRALVLKNCRNCEHLPP--LGKLPSLEDLEVCRMESVKRVGHEFLGVESDTDGSSVIAFPKLKHLKFYD 629 (711)
Q Consensus 552 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 629 (711)
.....+..+++|+.+.+.. .++.++. +..+.+|+.+.+.. +++.++...+ .++.+|+.+.|..
T Consensus 279 I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-----------~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-----------AGCEQLERIAIPS 343 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-----------TTCTTCCEEEECT
T ss_pred ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh-----------hCCCCCCEEEECc
Confidence 2244556778888887753 3555554 66778888888864 3666665433 3567788888843
Q ss_pred CcccccccccCccccccccCCcccEEeecCCCCCcCCCcCCCCCCCccEEEEe
Q 039822 630 MEELEEWDYGTAIKGEIIIMPRLSFLEIGGCRKLKALPDHLLQKTTLQRLDIH 682 (711)
Q Consensus 630 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~l~ 682 (711)
+++.+. ...+.++++|+.+.+.+... .+ ..+..+.+|+.+.+.
T Consensus 344 --sv~~I~-----~~aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 344 --SVTKIP-----ESAFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp --TCCBCC-----GGGGTTCTTCCEEEESSCHH--HH-HTCBCCCCC------
T ss_pred --ccCEEh-----HhHhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeC
Confidence 355443 23466888888888876321 11 234446667776654
No 180
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.74 E-value=0.0037 Score=57.41 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=36.8
Q ss_pred CCceEEEEEeCCCCCC-------ccCchhhHhhhccCCCCCEEEEEecchhhhh-------hhCCcCeEECCCCChhhHH
Q 039822 68 EGEKFLLVLDDVWNED-------YCKWEPFYYCLKNCLYGSKILITTRKETVAC-------IMGSTDVISVNVLSEMECW 133 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~-------~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~ 133 (711)
.+++.+||+||+..-. ......+...+... .+..+|.||....... .......+.+++++.++..
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 3567899999995432 11222222222222 2456777776554221 1122236888888888776
Q ss_pred HHH
Q 039822 134 SVF 136 (711)
Q Consensus 134 ~Lf 136 (711)
+++
T Consensus 192 ~il 194 (195)
T 1jbk_A 192 AIL 194 (195)
T ss_dssp TTC
T ss_pred HHh
Confidence 553
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.74 E-value=0.0025 Score=64.40 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||+|+.+++ .....-..+++++.. .+...+...+.... .+. +.+.. .+..+|++|++.
T Consensus 47 GtGKT~la~~i~~--~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~-----~~~----~~~~~-~~~~vL~iDEi~ 108 (324)
T 1l8q_A 47 GTGKTHLLQAAGN--EAKKRGYRVIYSSAD------DFAQAMVEHLKKGT-----INE----FRNMY-KSVDLLLLDDVQ 108 (324)
T ss_dssp SSSHHHHHHHHHH--HHHHTTCCEEEEEHH------HHHHHHHHHHHHTC-----HHH----HHHHH-HTCSEEEEECGG
T ss_pred CCcHHHHHHHHHH--HHHHCCCEEEEEEHH------HHHHHHHHHHHcCc-----HHH----HHHHh-cCCCEEEEcCcc
Confidence 8999999999998 343221234566532 22333333332110 111 11222 236699999984
Q ss_pred CCCc--cCchhhHhhhcc-CCCCCEEEEEecch---------hhhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcch
Q 039822 81 NEDY--CKWEPFYYCLKN-CLYGSKILITTRKE---------TVACIMGSTDVISVNVLSEMECWSVFESLAFFGNSMEE 148 (711)
Q Consensus 81 ~~~~--~~~~~~~~~l~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 148 (711)
.-.. .....+...+.. ...+..||+||... .+...+.....+.+++ +.++-.+++...+...+....
T Consensus 109 ~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~ 187 (324)
T 1l8q_A 109 FLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR 187 (324)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC
T ss_pred cccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC
Confidence 4321 111223222221 12356788888642 1222222335789999 999999999887643332222
Q ss_pred hhhHHHHHHHHHHhcCCChH
Q 039822 149 RENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 149 ~~~~~~~~~~i~~~~~g~Pl 168 (711)
.+....|++.+ |..-
T Consensus 188 ----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 188 ----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp ----HHHHHHHHHHC-SSHH
T ss_pred ----HHHHHHHHHhC-CCHH
Confidence 23355677777 6654
No 182
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.67 E-value=0.00069 Score=62.22 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=28.4
Q ss_pred cccccCCcEEecCCCCCCc-----cCCccccCCccCceeccCCC
Q 039822 387 LCELYNLQRLDVTYCKNLE-----ELPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 387 i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~ 425 (711)
+...++|++|+|++|..+. .+...+...++|++|++++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4567788889998872353 34555677788888888888
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.66 E-value=0.033 Score=54.02 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=75.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ +.... .+.+..+.-.+. . ...........+.......+.+|++|+++
T Consensus 49 GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid 108 (262)
T 2qz4_A 49 GCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV--------------I-GGLGAARVRSLFKEARARAPCIVYIDEID 108 (262)
T ss_dssp TSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred CCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcc
Confidence 8999999999997 33322 334443332110 0 01111112222222333457899999995
Q ss_pred CC------------CccCc---hhhHhhhcc--CCCCCEEEEEecchhhhh-h-hC--C-cCeEECCCCChhhHHHHHHH
Q 039822 81 NE------------DYCKW---EPFYYCLKN--CLYGSKILITTRKETVAC-I-MG--S-TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 81 ~~------------~~~~~---~~~~~~l~~--~~~~s~iivTtR~~~~~~-~-~~--~-~~~~~l~~L~~~ea~~Lf~~ 138 (711)
.- ..... ..+...+.. ...+..||.||......+ . .. . ...+.++..+.++-.+++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~ 188 (262)
T 2qz4_A 109 AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQ 188 (262)
T ss_dssp ------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHH
T ss_pred hhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 42 11111 122222222 123456666775543221 1 11 1 35778999999999999987
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCChH-HHHHH
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLPL-AAKTI 173 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 173 (711)
.+....... ........+++.+.|.+- .|..+
T Consensus 189 ~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 189 HLKSLKLTQ---SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp HHHHTTCCB---THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHhCCCCc---chhhHHHHHHHHCCCCCHHHHHHH
Confidence 764332211 112234678888888753 44443
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.63 E-value=0.026 Score=59.32 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEE-Eecchh--hh-hhhCCcCeEECCCCChhhHHHHHHHHhcCC
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILI-TTRKET--VA-CIMGSTDVISVNVLSEMECWSVFESLAFFG 143 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iiv-TtR~~~--~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 143 (711)
.+++.+|++|++..-.....+.+...+... ...+|. ||.+.. +. ........+.+++++.++...++.+.....
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 467899999999766555666666666542 234444 444432 11 222334588899999999999998876431
Q ss_pred C------CcchhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 144 N------SMEERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 144 ~------~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
. ..... .+....+++.++|.+-.+..+
T Consensus 182 ~~~~~~~~~~i~---~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 182 TRGYGGQDIVLP---DETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTSSTTSSEECC---HHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhhccccCcCC---HHHHHHHHHHCCCCHHHHHHH
Confidence 1 11111 234566777788887544433
No 185
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.62 E-value=0.031 Score=57.70 Aligned_cols=71 Identities=7% Similarity=0.066 Sum_probs=41.9
Q ss_pred cccCCcccEEEeccCCCCcccccc-chhhhccCccCCcCc---------cccccccCCcEEecCCCCCCccCCccccCCc
Q 039822 346 WDNVKGLRSLLVDCDEYSWSSEVL-PQLFDKLTCLRALKL---------KTLCELYNLQRLDVTYCKNLEELPPGIGKLR 415 (711)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~l-p~~~~~l~~L~~L~l---------~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 415 (711)
+....+|+.+.+.. .++.+ ..+|.++.+|+.++| ..+.++ +|+.+.+.. +++.++...-...
T Consensus 42 ~~~~~~i~~v~ip~-----~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~ 113 (379)
T 4h09_A 42 YKDRDRISEVRVNS-----GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGT 113 (379)
T ss_dssp GGGGGGCSEEEECT-----TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTC
T ss_pred cccccCCEEEEeCC-----CccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc--eeeEeccceeccC
Confidence 44667788887764 34444 345778888888777 223333 466665543 3555555444444
Q ss_pred cCceeccCC
Q 039822 416 KLMYLDNRW 424 (711)
Q Consensus 416 ~L~~L~l~~ 424 (711)
+|+.+.+..
T Consensus 114 ~L~~i~lp~ 122 (379)
T 4h09_A 114 DLDDFEFPG 122 (379)
T ss_dssp CCSEEECCT
T ss_pred CcccccCCC
Confidence 677777654
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.01 Score=63.98 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=81.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ ... + .++.++.+...... +....+........-..-...... .....+++.+||+|++.
T Consensus 87 GtGKTtla~~la~--~l~--~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 87 GIGKTTAAHLVAQ--ELG--Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp TSSHHHHHHHHHH--HTT--C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGG
T ss_pred CCCHHHHHHHHHH--HcC--C-CEEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCC
Confidence 8999999999998 331 1 23444444433333 222222211111000000000000 00123568899999995
Q ss_pred CCCccC---chhhHhhhccCCCCCEEEEEecchh---hhhhhCCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHH
Q 039822 81 NEDYCK---WEPFYYCLKNCLYGSKILITTRKET---VACIMGSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEK 154 (711)
Q Consensus 81 ~~~~~~---~~~~~~~l~~~~~~s~iivTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~ 154 (711)
.-.... +..+...+... +..||+++.+.. +.........+.+++++.++..+.+...+...+.... + +
T Consensus 159 ~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~---~ 232 (516)
T 1sxj_A 159 GMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-P---N 232 (516)
T ss_dssp GCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-T---T
T ss_pred ccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-H---H
Confidence 433222 23343333332 345666665432 2222223457899999999999998776543322221 1 2
Q ss_pred HHHHHHHhcCCCh-HHHHHHH
Q 039822 155 IGREIIRKCKGLP-LAAKTIA 174 (711)
Q Consensus 155 ~~~~i~~~~~g~P-lai~~~a 174 (711)
....|++.++|.+ -++..+.
T Consensus 233 ~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 233 VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 3567888899854 4555543
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.43 E-value=0.024 Score=57.51 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCC------------------CCCEEEEEecchhhh-h-hhCC-cCeEECCCC
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCL------------------YGSKILITTRKETVA-C-IMGS-TDVISVNVL 127 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~------------------~~s~iivTtR~~~~~-~-~~~~-~~~~~l~~L 127 (711)
.+..+|+||++..........+...+.... ++..+|.+|...... . .... ...+.++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 456788999986554433444444333221 124666666653221 1 1112 358999999
Q ss_pred ChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHHH
Q 039822 128 SEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTIA 174 (711)
Q Consensus 128 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 174 (711)
+.++...++...+...+.... .+....+++.+.|.|-.+..+.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999877644332211 2345678888999985554443
No 188
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.43 E-value=0.0004 Score=63.79 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=10.4
Q ss_pred cccCCcccEEEeccC
Q 039822 346 WDNVKGLRSLLVDCD 360 (711)
Q Consensus 346 ~~~~~~L~~L~l~~~ 360 (711)
....+.|++|+|.+|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 336677777877766
No 189
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.41 E-value=0.029 Score=54.87 Aligned_cols=136 Identities=21% Similarity=0.183 Sum_probs=66.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAE-FQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+|||++|+.+++ .... . .+.+.... .+.+. .... .......+......+..+|+||++
T Consensus 74 GtGKT~la~~ia~--~~~~--~-~~~i~~~~-------------~~~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 74 HSGKTALAAKIAE--ESNF--P-FIKICSPD-------------KMIGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp TSSHHHHHHHHHH--HHTC--S-EEEEECGG-------------GCTTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCH
T ss_pred CCcHHHHHHHHHH--HhCC--C-EEEEeCHH-------------HhcCC--chHHHHHHHHHHHHHHHhcCCcEEEEECh
Confidence 8999999999998 3222 2 12222221 01111 1111 112222333344567899999998
Q ss_pred CCC------CccCch----hhHhhhcc---CCCCCEEEEEecchhhhhhh---CC-cCeEECCCCCh-hhHHHHHHHHhc
Q 039822 80 WNE------DYCKWE----PFYYCLKN---CLYGSKILITTRKETVACIM---GS-TDVISVNVLSE-MECWSVFESLAF 141 (711)
Q Consensus 80 ~~~------~~~~~~----~~~~~l~~---~~~~s~iivTtR~~~~~~~~---~~-~~~~~l~~L~~-~ea~~Lf~~~~~ 141 (711)
..- ....-. .+...+.. .+....||.||...+..... .. ...+.+++++. ++..+++....
T Consensus 134 d~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~- 212 (272)
T 1d2n_A 134 ERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG- 212 (272)
T ss_dssp HHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-
T ss_pred hhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-
Confidence 431 111111 12222221 22234567777766544321 21 35788999988 66666655432
Q ss_pred CCCCcchhhhHHHHHHHHHHhcCC
Q 039822 142 FGNSMEERENLEKIGREIIRKCKG 165 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~~g 165 (711)
. .. .+....+++.+.|
T Consensus 213 ---~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 213 ---N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp ---C-SC----HHHHHHHHHHHTT
T ss_pred ---C-CC----HHHHHHHHHHhcC
Confidence 1 11 2235567777766
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.38 E-value=0.017 Score=57.74 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCC---------CccCchhhHhhhccCCCCCEEEEEecchhhhhh--hC------CcCeEECCCCChhhHH
Q 039822 71 KFLLVLDDVWNE---------DYCKWEPFYYCLKNCLYGSKILITTRKETVACI--MG------STDVISVNVLSEMECW 133 (711)
Q Consensus 71 r~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~--~~------~~~~~~l~~L~~~ea~ 133 (711)
..+|++|++..- .......+...+.....+..||.||........ .. ....+.+++++.++-.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELF 210 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHH
Confidence 359999999522 223334455555555556788888865432111 01 1368899999999999
Q ss_pred HHHHHHhcCC
Q 039822 134 SVFESLAFFG 143 (711)
Q Consensus 134 ~Lf~~~~~~~ 143 (711)
+++...+...
T Consensus 211 ~il~~~l~~~ 220 (309)
T 3syl_A 211 EIAGHMLDDQ 220 (309)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9998776443
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.37 E-value=0.026 Score=55.64 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=40.6
Q ss_pred CCCEEEEEecchhhhhh--hC---CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCC-ChHHHHH
Q 039822 99 YGSKILITTRKETVACI--MG---STDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKG-LPLAAKT 172 (711)
Q Consensus 99 ~~s~iivTtR~~~~~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 172 (711)
.+..||.||...+..+. .. -...+.++..+.++-.+++......... ..... ...+++...| .|-.|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 35678888875533221 11 1347889999999999999887643322 11112 3456666766 4544443
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.35 E-value=0.017 Score=58.16 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=74.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ .... .++.++.+.. . ....+.++....... ...+++.++|+|++.
T Consensus 58 G~GKT~la~~la~--~l~~---~~~~i~~~~~-~-~~~i~~~~~~~~~~~---------------~~~~~~~vliiDEi~ 115 (324)
T 3u61_B 58 GTGKTTVAKALCH--DVNA---DMMFVNGSDC-K-IDFVRGPLTNFASAA---------------SFDGRQKVIVIDEFD 115 (324)
T ss_dssp TSSHHHHHHHHHH--HTTE---EEEEEETTTC-C-HHHHHTHHHHHHHBC---------------CCSSCEEEEEEESCC
T ss_pred CCCHHHHHHHHHH--HhCC---CEEEEccccc-C-HHHHHHHHHHHHhhc---------------ccCCCCeEEEEECCc
Confidence 8999999999987 3322 2344443331 1 111122111110000 012478899999995
Q ss_pred CCC-ccCchhhHhhhccCCCCCEEEEEecchhh-hhh-hCCcCeEECCCCChhhHHHHH-------HHHhcCCCCcchhh
Q 039822 81 NED-YCKWEPFYYCLKNCLYGSKILITTRKETV-ACI-MGSTDVISVNVLSEMECWSVF-------ESLAFFGNSMEERE 150 (711)
Q Consensus 81 ~~~-~~~~~~~~~~l~~~~~~s~iivTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~Lf-------~~~~~~~~~~~~~~ 150 (711)
.-. ....+.+...+.....+.++|+||....- ... ......+.+++++.++-.+++ ...+...+.....
T Consensus 116 ~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~- 194 (324)
T 3u61_B 116 RSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD- 194 (324)
T ss_dssp CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-
T ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-
Confidence 544 33344444444433346788888876431 111 111247899999988743332 2222111111111
Q ss_pred hHHHHHHHHHHhcCCChHH
Q 039822 151 NLEKIGREIIRKCKGLPLA 169 (711)
Q Consensus 151 ~~~~~~~~i~~~~~g~Pla 169 (711)
.+....+++.++|..-.
T Consensus 195 --~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 195 --MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp --HHHHHHHHHHTCSCTTH
T ss_pred --HHHHHHHHHhCCCCHHH
Confidence 14466778888887653
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.028 Score=57.74 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=54.1
Q ss_pred eEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc-------------hhhh-hhhCCcCeEECCCCChhhHHHHH
Q 039822 71 KFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK-------------ETVA-CIMGSTDVISVNVLSEMECWSVF 136 (711)
Q Consensus 71 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~-------------~~~~-~~~~~~~~~~l~~L~~~ea~~Lf 136 (711)
+.+|++|++..-..+....+...+...... .++++|.. ..+. ........+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999655444444444444433323 34444431 1111 11122345799999999999999
Q ss_pred HHHhcCCCCcchhhhHHHHHHHHHHhcC-CChHHHHH
Q 039822 137 ESLAFFGNSMEERENLEKIGREIIRKCK-GLPLAAKT 172 (711)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~ 172 (711)
...+...+.... .+....|++.+. |.|-.+..
T Consensus 269 ~~~~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 269 RIRCEEEDVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHTTCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 877644333222 233556777776 76654443
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.23 E-value=0.0032 Score=60.94 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=50.1
Q ss_pred cCCcccEEEeccCCCCccccccchhhhccCccCCcCccccccccCCcEEecCCCCCCccCCccccCCc--cCceeccCCC
Q 039822 348 NVKGLRSLLVDCDEYSWSSEVLPQLFDKLTCLRALKLKTLCELYNLQRLDVTYCKNLEELPPGIGKLR--KLMYLDNRWT 425 (711)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~l~~L~~L~l~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~--~L~~L~l~~~ 425 (711)
.+++|++|+|++|.+.. +..+|. .++.+++|++|+|++|. +..+ ..+..+. +|+.|++++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~-l~~l~~--------------~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR-LDDMSS--------------IVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCC-CGGGTT--------------HHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCC-Cccchh--------------HHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCC
Confidence 56778888888774321 112222 23466778888888765 6655 2344444 7888888887
Q ss_pred Cccccccc-------cCCCccccCccCee
Q 039822 426 HSLRFLSV-------GIGELIRLRGVSRF 447 (711)
Q Consensus 426 ~~l~~lp~-------~i~~l~~L~~L~~~ 447 (711)
+--..+|. .+..+++|+.|+..
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cCccccCcchhHHHHHHHHCcccCeECCc
Confidence 54444442 24567777777653
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.06 E-value=0.0053 Score=57.08 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||+.+++ ........++|++.. .+...+........ .......+. . .-+|||||++
T Consensus 64 GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~----~-~~~lilDei~ 125 (202)
T 2w58_A 64 GVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQDQT-----MNEKLDYIK----K-VPVLMLDDLG 125 (202)
T ss_dssp TSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC---CC-----CHHHHHHHH----H-SSEEEEEEEC
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhccch-----HHHHHHHhc----C-CCEEEEcCCC
Confidence 8999999999998 454444566777653 23333332221111 112222222 1 2389999996
Q ss_pred CCCccCchh--hHh-hhccC-CCCCEEEEEecc
Q 039822 81 NEDYCKWEP--FYY-CLKNC-LYGSKILITTRK 109 (711)
Q Consensus 81 ~~~~~~~~~--~~~-~l~~~-~~~s~iivTtR~ 109 (711)
......|.. +.. .+... ..+.++|+||..
T Consensus 126 ~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 126 AEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 543333332 222 22211 235678888874
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.014 Score=57.97 Aligned_cols=122 Identities=12% Similarity=-0.039 Sum_probs=75.2
Q ss_pred CccHHHHHHHHhcChh-hhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDD-VKNHFEKRIWVCVSD-PFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+||||+|..+++.-. .......+.++..+. ...... .+.+...+.... ..+++-++|+|+
T Consensus 28 G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p----------------~~~~~kvviIde 90 (305)
T 2gno_A 28 LSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP----------------ELYTRKYVIVHD 90 (305)
T ss_dssp SSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC----------------SSSSSEEEEETT
T ss_pred CCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc----------------ccCCceEEEecc
Confidence 8999999999986200 111223445554332 222222 223333332111 124577899999
Q ss_pred CCCCCccCchhhHhhhccCCCCCEEEEEecch-hhhhhhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 79 VWNEDYCKWEPFYYCLKNCLYGSKILITTRKE-TVACIMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 79 v~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
+...+....+.+...+....+.+.+|++|.+. .+...+... .+++++++.++..+.+.+..
T Consensus 91 ad~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 91 CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 97766666677777777666677777777543 344443334 99999999999999997765
No 197
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.81 E-value=0.064 Score=53.83 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=76.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||++|+.+++ .....| +.++.+. +.... ..+.+.....+.+ .-..++.+|+||++
T Consensus 61 GtGKT~la~aia~--~~~~~~---~~v~~~~--------------l~~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 61 GTGKSYLAKAVAT--EANSTF---FSVSSSD--------------LVSKW--MGESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp SSCHHHHHHHHHH--HHTCEE---EEEEHHH--------------HHTTT--GGGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCcHHHHHHHHHH--HHCCCE---EEEchHH--------------Hhhcc--cchHHHHHHHHHHHHHhcCCeEEEechh
Confidence 8999999999998 333222 2232211 11111 1122222222222 22346689999999
Q ss_pred CCCCcc-------C----chhhHhhhc---cCCCCCEEEEEecchhhhh-hh--CCcCeEECCCCChhhHHHHHHHHhcC
Q 039822 80 WNEDYC-------K----WEPFYYCLK---NCLYGSKILITTRKETVAC-IM--GSTDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 80 ~~~~~~-------~----~~~~~~~l~---~~~~~s~iivTtR~~~~~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
..-... . ...+...+. ....+..||.||...+..+ .+ .-...+.++..+.++-.+++...+..
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 120 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp GGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 532110 0 122222222 2234556666776543221 11 12357788889999999999887654
Q ss_pred CCCcchhhhHHHHHHHHHHhcCC-ChHHHHHHH
Q 039822 143 GNSMEERENLEKIGREIIRKCKG-LPLAAKTIA 174 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a 174 (711)
....... .....|++.+.| .+-.|..+.
T Consensus 200 ~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 200 TPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 3322122 234667888877 454555444
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.79 E-value=0.0087 Score=54.42 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=46.7
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv 79 (711)
|+||||||+.++. .....-. .+++++ ..++...+.......... ..... +. +.-+||||++
T Consensus 48 G~GKTtL~~~i~~--~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~----~~-~~~llilDE~ 109 (180)
T 3ec2_A 48 GVGKTHLAVATLK--AIYEKKGIRGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKT----VL-NSPVLVLDDL 109 (180)
T ss_dssp SSSHHHHHHHHHH--HHHHHSCCCCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHH----HH-TCSEEEEETC
T ss_pred CCCHHHHHHHHHH--HHHHHcCCeEEEEE------HHHHHHHHHHHhcCchHH-----HHHHH----hc-CCCEEEEeCC
Confidence 8999999999998 4431111 344544 333444444333222111 11111 11 4568999999
Q ss_pred CCCCccCch--hhHhhhccC-CCCCEEEEEecch
Q 039822 80 WNEDYCKWE--PFYYCLKNC-LYGSKILITTRKE 110 (711)
Q Consensus 80 ~~~~~~~~~--~~~~~l~~~-~~~s~iivTtR~~ 110 (711)
+......|. .+...+... ..+..||+||...
T Consensus 110 ~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 110 GSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 643323333 222222211 2467899988643
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.76 E-value=0.0042 Score=54.49 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=19.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+|||||++.++.. ....=..++++....
T Consensus 46 G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 46 GAGKSHLLQAWVAQ--ALEAGKNAAYIDAAS 74 (149)
T ss_dssp TTTTCHHHHHHHHH--HHTTTCCEEEEETTT
T ss_pred CCCHHHHHHHHHHH--HHhcCCcEEEEcHHH
Confidence 89999999999983 332101267776544
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.058 Score=54.67 Aligned_cols=98 Identities=6% Similarity=0.024 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh-hhh-hhCCcCeEECCCCChhhHHHHHHHHhcCCCCc
Q 039822 69 GEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET-VAC-IMGSTDVISVNVLSEMECWSVFESLAFFGNSM 146 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 146 (711)
+.+-++|+|++........+.+...+.......++|++|.... +.. .......+.+.+++.++..+.+...+...+..
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK 188 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC
Confidence 3477899999855443344445555544445667777775542 211 11223478899999999888887665322221
Q ss_pred chhhhHHHHHHHHHHhcCCChHHH
Q 039822 147 EERENLEKIGREIIRKCKGLPLAA 170 (711)
Q Consensus 147 ~~~~~~~~~~~~i~~~~~g~Plai 170 (711)
.. .+....+++.++|.+-.+
T Consensus 189 i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 189 LS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp BC----HHHHHHHHHHHTTCHHHH
T ss_pred CC----HHHHHHHHHHcCCCHHHH
Confidence 11 234567888888887643
No 201
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.63 E-value=0.0099 Score=57.51 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=33.9
Q ss_pred ccccCCcEEecCCCCCCcc---CCccccCCccCceeccCCCCccccc
Q 039822 388 CELYNLQRLDVTYCKNLEE---LPPGIGKLRKLMYLDNRWTHSLRFL 431 (711)
Q Consensus 388 ~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~L~l~~~~~l~~l 431 (711)
.++++|++|+|++|. +.. +|..+..+++|+.|+|++| .+..+
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCc
Confidence 468899999999986 654 4566789999999999998 55554
No 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.63 E-value=0.14 Score=51.22 Aligned_cols=102 Identities=15% Similarity=0.007 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCCCcc-------Cc----hhhHhhhcc---CCCCCEEEEEecchhhhh-hh--CCcCeEECCCCChhh
Q 039822 69 GEKFLLVLDDVWNEDYC-------KW----EPFYYCLKN---CLYGSKILITTRKETVAC-IM--GSTDVISVNVLSEME 131 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~-------~~----~~~~~~l~~---~~~~s~iivTtR~~~~~~-~~--~~~~~~~l~~L~~~e 131 (711)
.++.+|++|++..-... .. ..+...+.. ...+..||.||...+..+ .+ .-...+.++..+.++
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHH
Confidence 56789999999542110 01 112222221 123445555665442221 11 223578889889998
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCC-hHHHHHHH
Q 039822 132 CWSVFESLAFFGNSMEERENLEKIGREIIRKCKGL-PLAAKTIA 174 (711)
Q Consensus 132 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a 174 (711)
-.+++............ ......|++.+.|. +-.|..+.
T Consensus 184 r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888876643222111 13356788888886 44455554
No 203
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.62 E-value=0.089 Score=53.62 Aligned_cols=149 Identities=9% Similarity=0.010 Sum_probs=74.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||++|+.+++ ..... .+.+..+.-.. .. ..........+.. .-..++.+|+||++
T Consensus 127 GtGKT~la~aia~--~~~~~---~~~i~~~~l~~--------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 127 GTGKTLIGKCIAS--QSGAT---FFSISASSLTS--------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp TSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred CCCHHHHHHHHHH--HcCCe---EEEEehHHhhc--------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 8999999999987 33222 23444332111 00 0111112222222 22356789999998
Q ss_pred CCCCc-----------cCchhhHhhhccC----CCCCEEEEEecchh-hhhhh-C-CcCeEECCCCChhhHHHHHHHHhc
Q 039822 80 WNEDY-----------CKWEPFYYCLKNC----LYGSKILITTRKET-VACIM-G-STDVISVNVLSEMECWSVFESLAF 141 (711)
Q Consensus 80 ~~~~~-----------~~~~~~~~~l~~~----~~~s~iivTtR~~~-~~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~ 141 (711)
..-.. .....+...+... ..+..||.||.... +.... . -...+.++..+.++-.+++...+.
T Consensus 186 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp HHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 32100 0112233223211 22445665665432 21111 1 134778888899988888877664
Q ss_pred CCCCcchhhhHHHHHHHHHHhcCC-ChHHHHHHH
Q 039822 142 FGNSMEERENLEKIGREIIRKCKG-LPLAAKTIA 174 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a 174 (711)
....... ......|++.+.| .+-+|..+.
T Consensus 266 ~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 266 KEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp TSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3222111 2345668888887 455565554
No 204
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.53 E-value=0.1 Score=53.11 Aligned_cols=102 Identities=11% Similarity=-0.072 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCCCcc-----------CchhhHhhhcc---CCCCCEEEEEecchhhhh-hh--CCcCeEECCCCChhh
Q 039822 69 GEKFLLVLDDVWNEDYC-----------KWEPFYYCLKN---CLYGSKILITTRKETVAC-IM--GSTDVISVNVLSEME 131 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~~-----------~~~~~~~~l~~---~~~~s~iivTtR~~~~~~-~~--~~~~~~~l~~L~~~e 131 (711)
.++.+|+||++..-... ....+...+.. ...+..||.||...+... .+ .-...+.++..+.++
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 221 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHH
Confidence 56789999999532211 01222222221 123455666676542211 11 223577889999999
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCC-ChHHHHHHH
Q 039822 132 CWSVFESLAFFGNSMEERENLEKIGREIIRKCKG-LPLAAKTIA 174 (711)
Q Consensus 132 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a 174 (711)
-.+++............ ......|++.+.| .+-.|..+.
T Consensus 222 r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999877643322111 1234667788887 454555544
No 205
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.15 E-value=0.033 Score=50.61 Aligned_cols=108 Identities=21% Similarity=0.124 Sum_probs=60.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC---CCHHHHHHHHHHH-------hcCCCCC----hhhHHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP---FDEFRIARSIIEA-------LTGSAPD----VAEFQSLMQHIQEF 66 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~-------l~~~~~~----~~~~~~~~~~~~~~ 66 (711)
|.||||.|...+- +-.++=..|+++..... .....+.+.+.-. +.-...+ ...........++.
T Consensus 38 GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~~~ 115 (196)
T 1g5t_A 38 GKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRM 115 (196)
T ss_dssp SSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHHHH
Confidence 8899999988877 44444335666643332 2233333332000 0000100 12233445556666
Q ss_pred cCCceE-EEEEeCCCC---CCccCchhhHhhhccCCCCCEEEEEecch
Q 039822 67 VEGEKF-LLVLDDVWN---EDYCKWEPFYYCLKNCLYGSKILITTRKE 110 (711)
Q Consensus 67 l~~~r~-LlvlDdv~~---~~~~~~~~~~~~l~~~~~~s~iivTtR~~ 110 (711)
+...+| |||||.+-. -.....+.+...+........||+|+|..
T Consensus 116 l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 116 LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 765555 999999721 12344555666666666788999999986
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.09 E-value=0.2 Score=49.44 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=39.8
Q ss_pred CCEEEEEecchhhh-hhh--CCcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChH-HHHHHH
Q 039822 100 GSKILITTRKETVA-CIM--GSTDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPL-AAKTIA 174 (711)
Q Consensus 100 ~s~iivTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a 174 (711)
+..||.||...+.. ... .-...+.++..+.++-..++...+...+.... ......+++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666677654321 111 11346778888888888888776533222111 2335667888888774 554443
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=1.1 Score=45.63 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=73.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ +....| +.|..+.-.+ .. ..+.+...+.+.+.. ...+++|++|++
T Consensus 192 GTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 192 GTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp SSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred CCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--------------cc--cchHHHHHHHHHHHHHHhCCceEeeecc
Confidence 8999999999998 444333 3344332111 11 111222222222222 356899999998
Q ss_pred CCCCc----c----------CchhhHhhhcc--CCCCCEEEEEecchhhhhh--hC--C-cCeEECCCCChhhHHHHHHH
Q 039822 80 WNEDY----C----------KWEPFYYCLKN--CLYGSKILITTRKETVACI--MG--S-TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~~~----~----------~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~--~~--~-~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+..-. . ....+...+.. ...+-.||.||...+..+. .. . ...+.++..+.++-.++|+.
T Consensus 251 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 251 DSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp SCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 53211 0 01112222222 2234466777776544322 12 2 56888998888888888876
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
....... ...-+ ...+++.+.|..
T Consensus 331 ~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 331 HSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred HhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 6533211 11112 345777787754
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.56 E-value=0.27 Score=50.76 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=40.9
Q ss_pred CCEEEEEecchhhh-hhh-CC-cCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChH-HHHHHH
Q 039822 100 GSKILITTRKETVA-CIM-GS-TDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPL-AAKTIA 174 (711)
Q Consensus 100 ~s~iivTtR~~~~~-~~~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a 174 (711)
...||.||...+.. ... .. ...+.++..+.++-.+++...+...+.... ......|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566666543222 111 12 246888999999999999877644333221 1245678888877543 554443
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.45 E-value=0.4 Score=50.35 Aligned_cols=102 Identities=13% Similarity=-0.050 Sum_probs=54.7
Q ss_pred CceEEEEEeCCCCCCc-------cCchhhHh----hhcc---CCCCCEEEEEecchhhhh-h-hCC-cCeEECCCCChhh
Q 039822 69 GEKFLLVLDDVWNEDY-------CKWEPFYY----CLKN---CLYGSKILITTRKETVAC-I-MGS-TDVISVNVLSEME 131 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~-------~~~~~~~~----~l~~---~~~~s~iivTtR~~~~~~-~-~~~-~~~~~l~~L~~~e 131 (711)
..+.+|+||++..-.. .....+.. .+.. ...+..||.||....... . ... ...+.++..+.++
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence 4678999999954211 01111221 1211 124566776776543221 1 112 3477888888888
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCC-hHHHHHHH
Q 039822 132 CWSVFESLAFFGNSMEERENLEKIGREIIRKCKGL-PLAAKTIA 174 (711)
Q Consensus 132 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a 174 (711)
-..+|............ ......|++.+.|. +-.|..+.
T Consensus 306 r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888777643222111 12346678888884 54555544
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.44 E-value=0.015 Score=50.74 Aligned_cols=38 Identities=8% Similarity=-0.207 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecc
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRK 109 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~ 109 (711)
..|++|+++.-.......+...+.......+||.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 46899999665544445555555444446678888864
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.27 E-value=0.044 Score=49.71 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 53 G~GKT~la~~~~~ 65 (187)
T 2p65_A 53 GVGKTAIVEGLAI 65 (187)
T ss_dssp GGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.95 E-value=0.075 Score=52.97 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=47.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHcCCceEEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDV---AEFQSLMQHIQEFVEGEKFLLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~l~~~r~LlvlD 77 (711)
|+|||++|+.+++ .....-...+.+..+....... . ...++ ..+.. .........+. .....+++||
T Consensus 57 GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~~-~---~~l~g-~~~~~~~~~~~~~~~~~~~---~~~~~vl~lD 126 (311)
T 4fcw_A 57 GVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-V---SRLIG-APPGYVGYEEGGQLTEAVR---RRPYSVILFD 126 (311)
T ss_dssp SSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTTH-H---HHHHC-CCTTSTTTTTCCHHHHHHH---HCSSEEEEEE
T ss_pred CcCHHHHHHHHHH--HHcCCCcceEEeeccccccccc-H---HHhcC-CCCccccccccchHHHHHH---hCCCeEEEEe
Confidence 8999999999998 3332222345565544332211 1 11122 11110 00011111111 1345799999
Q ss_pred CCCCCCccCchhhHhhhccCC-----------CCCEEEEEecc
Q 039822 78 DVWNEDYCKWEPFYYCLKNCL-----------YGSKILITTRK 109 (711)
Q Consensus 78 dv~~~~~~~~~~~~~~l~~~~-----------~~s~iivTtR~ 109 (711)
++..-.......+...+.... ....||.||..
T Consensus 127 Ei~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 127 AIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp TGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred ChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 996655444555555443211 13347777765
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.35 E-value=0.036 Score=55.18 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=20.0
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~wv~~~ 30 (711)
|+|||+||..+++ ... ..-..++++++.
T Consensus 162 GtGKT~La~aia~--~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 162 GIGKSYLLAAMAH--ELSEKKGVSTTLLHFP 190 (308)
T ss_dssp TSSHHHHHHHHHH--HHHHHSCCCEEEEEHH
T ss_pred CCCHHHHHHHHHH--HHHHhcCCcEEEEEHH
Confidence 8999999999998 444 333456666653
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.52 Score=48.76 Aligned_cols=141 Identities=17% Similarity=0.168 Sum_probs=66.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ .....| +.|+.+.-.+ .. ..+.....+.+.+ .-...++++++|++
T Consensus 216 GtGKT~lakAiA~--~~~~~~---~~v~~~~l~~--------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEi 274 (428)
T 4b4t_K 216 GTGKTMLVKAVAN--STKAAF---IRVNGSEFVH--------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEV 274 (428)
T ss_dssp TTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred CCCHHHHHHHHHH--HhCCCe---EEEecchhhc--------------cc--cchhHHHHHHHHHHHHHcCCCeeechhh
Confidence 8999999999998 443332 3344332111 11 1111122222222 22356899999998
Q ss_pred CCC------Ccc----C----chhhHhhhcc--CCCCCEEEEEecchhhhhh--hCC---cCeEECCCCChhhHH-HHHH
Q 039822 80 WNE------DYC----K----WEPFYYCLKN--CLYGSKILITTRKETVACI--MGS---TDVISVNVLSEMECW-SVFE 137 (711)
Q Consensus 80 ~~~------~~~----~----~~~~~~~l~~--~~~~s~iivTtR~~~~~~~--~~~---~~~~~l~~L~~~ea~-~Lf~ 137 (711)
+.. ... . ...++..+.. ...+-.||.||...+..+. ..+ ...+.++.+...++. .+|.
T Consensus 275 D~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 275 DSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp HHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHH
T ss_pred hhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHH
Confidence 310 000 1 1122222221 2235567777766543321 122 346777767655554 4554
Q ss_pred HHhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 138 SLAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
...... .....-+ ...+++.+.|.-
T Consensus 355 ~~~~~~-~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 355 TIASKM-SLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHHHSS-CBCTTCC----HHHHHHHTTTCC
T ss_pred HHhcCC-CCCcccC----HHHHHHHCCCCC
Confidence 443221 1111122 245667777653
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=1.1 Score=46.53 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=72.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ .....| +.+..+.-.+ .. ..+.......+.. .-...+++|++|++
T Consensus 225 GtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEi 283 (437)
T 4b4t_L 225 GTGKTLLAKAVAA--TIGANF---IFSPASGIVD--------------KY--IGESARIIREMFAYAKEHEPCIIFMDEV 283 (437)
T ss_dssp TSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred CCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--------------cc--chHHHHHHHHHHHHHHhcCCceeeeecc
Confidence 8999999999998 443332 3344332111 11 1111222222222 22356899999999
Q ss_pred CCCCc------cC--------chhhHhhhcc--CCCCCEEEEEecchhhhhh--hCC---cCeEECCCCChhhHHHHHHH
Q 039822 80 WNEDY------CK--------WEPFYYCLKN--CLYGSKILITTRKETVACI--MGS---TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~~~------~~--------~~~~~~~l~~--~~~~s~iivTtR~~~~~~~--~~~---~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+..-. .. ...++..+.. ...+..||.||...+..+. ..+ ...+.++..+.++-.++|+.
T Consensus 284 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 284 DAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp CSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH
T ss_pred cccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH
Confidence 53110 01 1112222221 2235578888876654432 122 34778887787777788876
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
....... ...-+ ...+++.+.|.-
T Consensus 364 ~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 364 HTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred HhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 6532211 11112 245777787764
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.55 E-value=0.42 Score=44.51 Aligned_cols=74 Identities=23% Similarity=0.208 Sum_probs=43.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc-----------CCC-CChhhHHHHHHHHHHHcC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALT-----------GSA-PDVAEFQSLMQHIQEFVE 68 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~~~~~~~~~~l~ 68 (711)
|+||||+|..++. ..=..++|++.....+...+.+ +++... ... ....+.......++...+
T Consensus 30 GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (220)
T 2cvh_A 30 ASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVD 103 (220)
T ss_dssp TSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhh
Confidence 8999999999986 1224688888776556554443 332221 111 112222334445555554
Q ss_pred CceEEEEEeCCC
Q 039822 69 GEKFLLVLDDVW 80 (711)
Q Consensus 69 ~~r~LlvlDdv~ 80 (711)
.+.-++|+|.+.
T Consensus 104 ~~~~lliiD~~~ 115 (220)
T 2cvh_A 104 SNFALVVVDSIT 115 (220)
T ss_dssp TTEEEEEEECCC
T ss_pred cCCCEEEEcCcH
Confidence 457799999973
No 217
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.41 E-value=0.94 Score=44.65 Aligned_cols=143 Identities=12% Similarity=0.147 Sum_probs=72.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ ..... ++.++ ... +.....+... .... ..+.......+.+|++|++.
T Consensus 59 GtGKT~la~ala~--~~~~~-----~i~v~----~~~----l~~~~~g~~~--~~~~---~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 59 GCGKTLLAKAIAN--ECQAN-----FISIK----GPE----LLTMWFGESE--ANVR---EIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp SSSHHHHHHHHHH--HTTCE-----EEEEC----HHH----HHHHHHTTCT--THHH---HHHHHHHHTCSEEEEECSTT
T ss_pred CcCHHHHHHHHHH--HhCCC-----EEEEE----hHH----HHhhhcCchH--HHHH---HHHHHHHhcCCeEEEEEChH
Confidence 8999999999998 33322 23222 112 2222222221 1111 22222223567899999994
Q ss_pred CCCc----------cC----chhhHhhhcc--CCCCCEEEEEecchhhhh-h-hC--C-cCeEECCCCChhhHHHHHHHH
Q 039822 81 NEDY----------CK----WEPFYYCLKN--CLYGSKILITTRKETVAC-I-MG--S-TDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 81 ~~~~----------~~----~~~~~~~l~~--~~~~s~iivTtR~~~~~~-~-~~--~-~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
.-.. .. ...+...+.. ...+..||.||...+..+ . .. . ...+.++..+.++-.+++...
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 119 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp HHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred HHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHH
Confidence 2100 01 1233333322 123557777776553322 1 12 1 347889999998888888766
Q ss_pred hcCCCCcchhhhHHHHHHHHHHhcCCChH
Q 039822 140 AFFGNSMEERENLEKIGREIIRKCKGLPL 168 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 168 (711)
...... ....+. ..+++.+.|.|-
T Consensus 199 l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 199 LRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp HTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred HccCCC-CccchH----HHHHHHcCCCCH
Confidence 533211 111122 345566777664
No 218
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.34 E-value=1.7 Score=43.66 Aligned_cols=102 Identities=10% Similarity=-0.077 Sum_probs=68.4
Q ss_pred cCCceEEEEEeCCCC-CCccCchhhHhhhccCCCCCEEEEEecc-------hhhhhhh-CCcCeEECCCCChhhHHHHHH
Q 039822 67 VEGEKFLLVLDDVWN-EDYCKWEPFYYCLKNCLYGSKILITTRK-------ETVACIM-GSTDVISVNVLSEMECWSVFE 137 (711)
Q Consensus 67 l~~~r~LlvlDdv~~-~~~~~~~~~~~~l~~~~~~s~iivTtR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~ 137 (711)
+-+++-++|+|++.. .+...++.+...+....+++.+|+++.. ..+...+ .....++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 346677889999855 4445667777777665567777777643 2344333 335688999999999988887
Q ss_pred HHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHH
Q 039822 138 SLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKT 172 (711)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 172 (711)
+.+...+.... .+.+..+++.++|...++..
T Consensus 153 ~~~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 77644333221 24467788999998876655
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.19 E-value=0.089 Score=59.73 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=62.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ .....-...+.++.+...+.... . .......+++ ....+|+||++.
T Consensus 531 GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~~~~---------------~-~~~l~~~~~~---~~~~vl~lDEi~ 589 (758)
T 3pxi_A 531 GVGKTELARALAE--SIFGDEESMIRIDMSEYMEKHST---------------S-GGQLTEKVRR---KPYSVVLLDAIE 589 (758)
T ss_dssp TSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSSCCC---------------C----CHHHHHH---CSSSEEEEECGG
T ss_pred CCCHHHHHHHHHH--HhcCCCcceEEEechhccccccc---------------c-cchhhHHHHh---CCCeEEEEeCcc
Confidence 8999999999998 33332334556665432211100 0 0011111111 234489999997
Q ss_pred CCCccCchhhHhhhccC-----------CCCCEEEEEecch-----hh----hhhh-----CC-cCeEECCCCChhhHHH
Q 039822 81 NEDYCKWEPFYYCLKNC-----------LYGSKILITTRKE-----TV----ACIM-----GS-TDVISVNVLSEMECWS 134 (711)
Q Consensus 81 ~~~~~~~~~~~~~l~~~-----------~~~s~iivTtR~~-----~~----~~~~-----~~-~~~~~l~~L~~~ea~~ 134 (711)
.........+...+... ....+||+||... .+ ...+ .. ...+.+++++.++-.+
T Consensus 590 ~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~ 669 (758)
T 3pxi_A 590 KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTE 669 (758)
T ss_dssp GSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHH
T ss_pred ccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHH
Confidence 66655555555544331 1356888888731 11 1111 11 2478888998888887
Q ss_pred HHHHHh
Q 039822 135 VFESLA 140 (711)
Q Consensus 135 Lf~~~~ 140 (711)
++....
T Consensus 670 i~~~~l 675 (758)
T 3pxi_A 670 IVSLMS 675 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.12 E-value=0.92 Score=43.47 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=35.1
Q ss_pred CCEEEEEecchhhh-hhh-C---CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCC-ChHHHHH
Q 039822 100 GSKILITTRKETVA-CIM-G---STDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKG-LPLAAKT 172 (711)
Q Consensus 100 ~s~iivTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 172 (711)
+..||.||...+.. ... . -...+.++..+.++-.+++........ ...... ...+++...| .+--|..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHH
Confidence 45677777654322 111 1 134677888788877777766543211 111111 2345666777 5544443
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.02 E-value=0.16 Score=49.13 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=12.7
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||++|+.+++.
T Consensus 39 GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 39 GTGKELIASRLHYL 52 (265)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHh
Confidence 89999999999873
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.83 E-value=0.54 Score=53.99 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=35.7
Q ss_pred CceEEEEEeCCCCCC--------ccCchhhHhhhccCCCCCEEEEEecchhh-----hhhh-CCcCeEECCCCChhhHHH
Q 039822 69 GEKFLLVLDDVWNED--------YCKWEPFYYCLKNCLYGSKILITTRKETV-----ACIM-GSTDVISVNVLSEMECWS 134 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~--------~~~~~~~~~~l~~~~~~s~iivTtR~~~~-----~~~~-~~~~~~~l~~L~~~ea~~ 134 (711)
+++.+|++|++..-. .+....+...+.. + +..+|.+|..... ...+ .....+.+++++.++..+
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 367999999984321 1111223333322 2 3456655554322 1111 123468999999999999
Q ss_pred HHHHH
Q 039822 135 VFESL 139 (711)
Q Consensus 135 Lf~~~ 139 (711)
++...
T Consensus 340 iL~~~ 344 (854)
T 1qvr_A 340 ILRGL 344 (854)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98644
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.69 E-value=1.6 Score=45.33 Aligned_cols=141 Identities=16% Similarity=0.094 Sum_probs=71.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-HcCCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQE-FVEGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ +....| +.|..+.-. ... ..+.+...+.+.. .-...+++|++|++
T Consensus 253 GTGKTlLAkAiA~--e~~~~f---i~vs~s~L~--------------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 253 GTGKTLCARAVAN--RTDATF---IRVIGSELV--------------QKY--VGEGARMVRELFEMARTKKACIIFFDEI 311 (467)
T ss_dssp TSSHHHHHHHHHH--HHTCEE---EEEEGGGGC--------------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCcHHHHHHHHHh--ccCCCe---EEEEhHHhh--------------ccc--CCHHHHHHHHHHHHHHhcCCceEeeccc
Confidence 8999999999998 444332 334332211 111 1111222222222 22356899999998
Q ss_pred CCCCc------cC--------chhhHhhhccC--CCCCEEEEEecchhhhhh--hC--C-cCeEECCCCChhhHHHHHHH
Q 039822 80 WNEDY------CK--------WEPFYYCLKNC--LYGSKILITTRKETVACI--MG--S-TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~~~------~~--------~~~~~~~l~~~--~~~s~iivTtR~~~~~~~--~~--~-~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+..-. .. ...++..+... ..+..||.||...+..+. .. . ...+.++..+.++-.++|+.
T Consensus 312 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH
T ss_pred ccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH
Confidence 53211 00 01112222222 234456667765543321 12 2 45788888888888888876
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
....... ...-+ ...|++.+.|.-
T Consensus 392 ~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 392 HSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp HHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred HhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 6532211 11112 245677777764
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.61 E-value=0.12 Score=44.65 Aligned_cols=38 Identities=5% Similarity=0.019 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccC-CCCCEEEEEecc
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNC-LYGSKILITTRK 109 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~-~~~s~iivTtR~ 109 (711)
-.+++|++..-.......+...+... ..+.++|.||..
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 46889999665544444444444332 235678888764
No 225
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.43 E-value=0.065 Score=52.79 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=36.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCV--SDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|+|||+||.+++.. .-..++|++. .+..+. .. .+.+.....+.+.+.+.+ ++|+|+
T Consensus 133 GsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~~---~~le~~l~~i~~~l~~~~-LLVIDs 190 (331)
T 2vhj_A 133 NSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------YN---TDFNVFVDDIARAMLQHR-VIVIDS 190 (331)
T ss_dssp SSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------CB---CCHHHHHHHHHHHHHHCS-EEEEEC
T ss_pred CCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------hh---cCHHHHHHHHHHHHhhCC-EEEEec
Confidence 89999999999973 1124677877 332111 00 233445555566665555 999999
Q ss_pred CC
Q 039822 79 VW 80 (711)
Q Consensus 79 v~ 80 (711)
+.
T Consensus 191 I~ 192 (331)
T 2vhj_A 191 LK 192 (331)
T ss_dssp CT
T ss_pred cc
Confidence 93
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.17 E-value=0.4 Score=50.89 Aligned_cols=148 Identities=8% Similarity=0.053 Sum_probs=73.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.+++ +.... .+.++.. .+. .... ..........+.....+++.+|+||++.
T Consensus 248 GtGKT~lAraia~--~~~~~---fv~vn~~----------~l~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 248 GTGKTLIARAVAN--ETGAF---FFLINGP----------EIM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp TSSHHHHHHHHHH--HCSSE---EEEEEHH----------HHH----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred CCCHHHHHHHHHH--HhCCC---EEEEEch----------Hhh----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 8999999999987 33222 2333321 111 1111 1112222333334445667899999983
Q ss_pred CCCc-----------cCchhhHhhhcc--CCCCCEEEEEecchhh-hhhh-C---CcCeEECCCCChhhHHHHHHHHhcC
Q 039822 81 NEDY-----------CKWEPFYYCLKN--CLYGSKILITTRKETV-ACIM-G---STDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 81 ~~~~-----------~~~~~~~~~l~~--~~~~s~iivTtR~~~~-~~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
.-.. .....+...+.. ...+..||.||...+. .... . -...+.++..+.++-.+++...+..
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp HHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred hhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 2110 011223333332 1234466667665432 2121 1 1346889999999999999877533
Q ss_pred CCCcchhhhHHHHHHHHHHhcCCC-hHHHHHH
Q 039822 143 GNSMEERENLEKIGREIIRKCKGL-PLAAKTI 173 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 173 (711)
... ..... ...+++.+.|. +-.|..+
T Consensus 388 ~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 388 MKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 211 11112 24466666664 4444433
No 227
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.09 E-value=2.6 Score=42.19 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=35.1
Q ss_pred CeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCChHHHHHH
Q 039822 120 DVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLPLAAKTI 173 (711)
Q Consensus 120 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 173 (711)
....+++.+.++-.+++.+.+...+... -.+.+..|++.++|.|-.+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHH
Confidence 3578999999999999988763322211 1345788999999999654433
No 228
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.02 E-value=0.75 Score=45.42 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=16.6
Q ss_pred CeEECCCCChhhHHHHHHHH
Q 039822 120 DVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 120 ~~~~l~~L~~~ea~~Lf~~~ 139 (711)
..+.+++++.++..+++...
T Consensus 195 ~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 195 IRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCCCCHHHHHHHHHSS
T ss_pred ceEEcCCcCHHHHHHHHHhh
Confidence 46899999999988888753
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.84 E-value=0.44 Score=47.59 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=44.7
Q ss_pred CccHHHHHHHHhcChhhhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHhcCCC------------CChh
Q 039822 1 GIGKTTLAQLAYNNDDVKN---------HF-----EKRIWVCVSDPFDEFRIARSIIEALTGSA------------PDVA 54 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 54 (711)
|+|||++|.+++.+..... .. ..++|++....++...+.+ +++.++... ....
T Consensus 108 gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 186 (322)
T 2i1q_A 108 GSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYNSD 186 (322)
T ss_dssp TSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSSHH
T ss_pred CCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCCHH
Confidence 8999999999886322211 11 3688999888877776654 345553221 1111
Q ss_pred hHHHHHHHHHHHcC--CceEEEEEeCC
Q 039822 55 EFQSLMQHIQEFVE--GEKFLLVLDDV 79 (711)
Q Consensus 55 ~~~~~~~~~~~~l~--~~r~LlvlDdv 79 (711)
+..+....+.+.++ .+.-+||+|.+
T Consensus 187 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 187 MQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 12233344444443 34557788877
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.75 E-value=2.1 Score=44.97 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=71.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||++|+.++. +.... .+.++.+.-... .. ..........+.+.....+.+|+||++.
T Consensus 59 GtGKT~Laraia~--~~~~~---f~~is~~~~~~~--------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 59 GTGKTLLARAVAG--EANVP---FFHISGSDFVEL--------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp TSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC--------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred CCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH--------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 8999999999998 33222 233333221110 00 1111122223334444678999999984
Q ss_pred CCCcc--------------CchhhHhhhcc--CCCCCEEEEEecchhhhhh--hCC---cCeEECCCCChhhHHHHHHHH
Q 039822 81 NEDYC--------------KWEPFYYCLKN--CLYGSKILITTRKETVACI--MGS---TDVISVNVLSEMECWSVFESL 139 (711)
Q Consensus 81 ~~~~~--------------~~~~~~~~l~~--~~~~s~iivTtR~~~~~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~ 139 (711)
.-... ....+...+.. ...+..||.||...+..+. ..+ ...+.++..+.++-.+++...
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 32110 11222222221 1235567777776654321 121 237888888887777777665
Q ss_pred hcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 140 AFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
...... ....+ ...+++.+.|..
T Consensus 199 ~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 199 TRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred HHhCCC-cchhh----HHHHHHhcCCCc
Confidence 532211 11111 234777888876
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.71 E-value=2.2 Score=41.76 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 46 GtGKT~la~aiA~ 58 (293)
T 3t15_A 46 GQGKSFQCELVFR 58 (293)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 232
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.64 E-value=0.49 Score=47.97 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=45.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcCC-ceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVEG-EKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~~-~r~Ll 74 (711)
|+||||+|.+++.. ....=..++||+....++.. .++.++.... +....++....+++..+. +--+|
T Consensus 84 GsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lV 156 (366)
T 1xp8_A 84 SGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVV 156 (366)
T ss_dssp TSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred CCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEE
Confidence 89999999999873 33222478999988877754 2444433211 112345555566655543 34589
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|.+
T Consensus 157 VIDsl 161 (366)
T 1xp8_A 157 VVDSV 161 (366)
T ss_dssp EEECT
T ss_pred EEeCh
Confidence 99998
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.44 E-value=0.96 Score=47.78 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=36.1
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhh-------hhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVAC-------IMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
..++.+|++|.- .+....+...+.. ...++|.+|....... .......+.+++.+.++..+++....
T Consensus 265 ~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 356789999921 1122223322321 1346666665443111 11123479999999999999998664
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.20 E-value=0.64 Score=45.60 Aligned_cols=72 Identities=10% Similarity=0.202 Sum_probs=45.4
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----hhhHHHH-HHHHHHH--c-CC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPFDEFRIARSIIEALTGSAPD-----VAEFQSL-MQHIQEF--V-EG 69 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~~--l-~~ 69 (711)
|+||||||.+++. .....+ ..++||+..+.++.. .+++++..... ..+.++. ...+... + .+
T Consensus 38 GsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~ 110 (333)
T 3io5_A 38 KSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110 (333)
T ss_dssp SSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhcc
Confidence 8999999999987 333332 358899988888764 36666544221 1233343 3332222 3 35
Q ss_pred ceEEEEEeCC
Q 039822 70 EKFLLVLDDV 79 (711)
Q Consensus 70 ~r~LlvlDdv 79 (711)
+.-++|+|-+
T Consensus 111 ~~~lvVIDSI 120 (333)
T 3io5_A 111 EKVVVFIDSL 120 (333)
T ss_dssp CCEEEEEECS
T ss_pred CceEEEEecc
Confidence 6789999998
No 235
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.96 E-value=0.31 Score=48.25 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 35 GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 35 GTGKELVARALHA 47 (304)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 8999999999987
No 236
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.88 E-value=0.59 Score=46.70 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.5
Q ss_pred CccHHHHHHHHhcChhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH----FEKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+||||+|.+++........ =..++|++....++...+.+ +++.++
T Consensus 117 GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 117 GSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 89999999999873211111 23689999888877766553 345543
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.87 E-value=0.66 Score=50.06 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCEEEEEecchhhhh--hhCCcCeEECCCCChhhHHHHHHHHh
Q 039822 100 GSKILITTRKETVAC--IMGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 100 ~s~iivTtR~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
...||.||....... .......+.+++++.++-.+++....
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 346676666543111 11112478899999888888876653
No 238
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.86 E-value=0.093 Score=51.01 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCCCc---------------cCchhhHhhhccC---CCCCEEEEEecchhhhh--hhC---CcCeEECC
Q 039822 69 GEKFLLVLDDVWNEDY---------------CKWEPFYYCLKNC---LYGSKILITTRKETVAC--IMG---STDVISVN 125 (711)
Q Consensus 69 ~~r~LlvlDdv~~~~~---------------~~~~~~~~~l~~~---~~~s~iivTtR~~~~~~--~~~---~~~~~~l~ 125 (711)
.+..+|++|++..-.. .....+...+... .....||.||......+ ... -...+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 3567999999943211 1122333333221 12346777776554221 111 13467888
Q ss_pred CCChhhHHHHHHHHh
Q 039822 126 VLSEMECWSVFESLA 140 (711)
Q Consensus 126 ~L~~~ea~~Lf~~~~ 140 (711)
..+.++-.+++....
T Consensus 182 ~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 182 KPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCTTTHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 888888888887665
No 239
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.79 E-value=1.8 Score=44.42 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=70.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ +....| +.++.+.- .... ..+.+.....+.+.. +..+++|++|++
T Consensus 226 GTGKTlLAkAiA~--e~~~~f---i~v~~s~l--------------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEi 284 (437)
T 4b4t_I 226 GTGKTLLAKAVAN--QTSATF---LRIVGSEL--------------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEI 284 (437)
T ss_dssp TTTHHHHHHHHHH--HHTCEE---EEEESGGG--------------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CchHHHHHHHHHH--HhCCCE---EEEEHHHh--------------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehh
Confidence 8999999999998 443332 23332221 1111 112222222222222 356899999998
Q ss_pred CCCCc------cC--------chhhHhhhcc--CCCCCEEEEEecchhhhhh-h-CC---cCeEECCCCChhhHHHHHHH
Q 039822 80 WNEDY------CK--------WEPFYYCLKN--CLYGSKILITTRKETVACI-M-GS---TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~~~------~~--------~~~~~~~l~~--~~~~s~iivTtR~~~~~~~-~-~~---~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+..-. .. ...++..+.. ...+..||.||...+..+. + .+ ...+.++.-+.++-.++|..
T Consensus 285 Dai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 285 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp SSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH
Confidence 42110 00 1112222221 2234567777766654432 1 11 34677887788887888876
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
....... ..+-+ ...|++.+.|.-
T Consensus 365 ~l~~~~l-~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 365 HTSKMNL-SEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HHTTSCB-CSCCC----HHHHHHHCCSCC
T ss_pred HhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 6532211 11112 245667777753
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.50 E-value=0.92 Score=45.68 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=30.1
Q ss_pred CccHHHHHHHHhcChhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKN----HFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||+|.+++....... .=..++|++....++...+.+ ++..+
T Consensus 132 GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 132 RTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp TCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 8999999999887322211 124688999888777765543 34444
No 241
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.28 E-value=1 Score=46.66 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=69.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDdv 79 (711)
|+|||.+|+++++ +....| +.++.+.-. ... ..+.+...+.+.... ...+++|++|++
T Consensus 225 GTGKTllAkAiA~--e~~~~f---~~v~~s~l~--------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEi 283 (434)
T 4b4t_M 225 GTGKTLLARACAA--QTNATF---LKLAAPQLV--------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDEL 283 (434)
T ss_dssp TSSHHHHHHHHHH--HHTCEE---EEEEGGGGC--------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECT
T ss_pred CCCHHHHHHHHHH--HhCCCE---EEEehhhhh--------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecch
Confidence 8999999999998 443332 333332211 111 111122222222222 245799999998
Q ss_pred CCC------Ccc----C----chhhHhhhccC--CCCCEEEEEecchhhhhh-h-CC---cCeEECCCCChhhHHHHHHH
Q 039822 80 WNE------DYC----K----WEPFYYCLKNC--LYGSKILITTRKETVACI-M-GS---TDVISVNVLSEMECWSVFES 138 (711)
Q Consensus 80 ~~~------~~~----~----~~~~~~~l~~~--~~~s~iivTtR~~~~~~~-~-~~---~~~~~l~~L~~~ea~~Lf~~ 138 (711)
+.- ... . ...+...+... ..+-.||.||...+..+. + .+ ...+.++..+.++-.++|+.
T Consensus 284 Dal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 284 DAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp HHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHH
Confidence 321 000 0 11122222222 234456667776654432 1 11 35788888888887788865
Q ss_pred HhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 139 LAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
....... ...-+ ...|++.+.|.-
T Consensus 364 ~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 364 HSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp HHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred HhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 5422111 11112 245677777753
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.27 E-value=3.2 Score=40.13 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=59.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDdv 79 (711)
|+||||||+.++. .... ..+++....-.+. ...+.......+.+.. .....++++|++
T Consensus 54 GtGKTtLakala~--~~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 54 GCGKTLLAKAVAN--ESGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp TSCHHHHHHHHHH--HTTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred CCcHHHHHHHHHH--HcCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehh
Confidence 8999999999997 3322 2445543221110 0011111122222221 245789999998
Q ss_pred CCCCc-------cCchh----hHhhhccC--CCCCEEEEEecchhhhhhh--C---CcCeEECCCCChhhHHHHHHHHh
Q 039822 80 WNEDY-------CKWEP----FYYCLKNC--LYGSKILITTRKETVACIM--G---STDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 80 ~~~~~-------~~~~~----~~~~l~~~--~~~s~iivTtR~~~~~~~~--~---~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
..... ..... +...+... ....-++.+|...++.+.. . -...+.++..+.++-.++|....
T Consensus 113 d~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 113 DALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 43110 01111 11122211 1234456667666554321 1 14577888888888888887665
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.24 E-value=0.54 Score=47.38 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=44.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++. .....=..++||+....++.. .+++++.... .....++....+...++ .+.-++
T Consensus 71 GsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlv 143 (356)
T 3hr8_A 71 SSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLI 143 (356)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEE
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeE
Confidence 8999999999997 333222357899888777754 4555543211 12234445555555443 445588
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|.+
T Consensus 144 VIDSi 148 (356)
T 3hr8_A 144 VVDSV 148 (356)
T ss_dssp EEECT
T ss_pred EehHh
Confidence 89998
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.99 E-value=0.13 Score=48.20 Aligned_cols=103 Identities=17% Similarity=0.035 Sum_probs=54.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHHcCCceE-EEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD--VAEFQSLMQHIQEFVEGEKF-LLVLD 77 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~r~-LlvlD 77 (711)
|+||||++..+++ +...+-..++.+...... . ....++++++..... ....++....+.+.+...++ +||+|
T Consensus 22 GsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViID 96 (223)
T 2b8t_A 22 FAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGID 96 (223)
T ss_dssp TSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEEC
T ss_pred CCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEe
Confidence 8999999999888 454444445555422211 1 112344444322211 12233445555555544444 99999
Q ss_pred CCCCCCccCchhhHhhhccCCCCCEEEEEecchh
Q 039822 78 DVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET 111 (711)
Q Consensus 78 dv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~ 111 (711)
.+..-..+..+ +...+.+ .+..||+|-++.+
T Consensus 97 EaQ~l~~~~ve-~l~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 97 EVQFFDDRICE-VANILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SGGGSCTHHHH-HHHHHHH--TTCEEEEECCSBC
T ss_pred cCccCcHHHHH-HHHHHHh--CCCeEEEEecccc
Confidence 98432222222 2222333 2778999998654
No 245
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.91 E-value=0.5 Score=39.86 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcccEEeecCCCCCcCCCcC-CCCCCCccEEEEecCcc
Q 039822 650 PRLSFLEIGGCRKLKALPDH-LLQKTTLQRLDIHGCPI 686 (711)
Q Consensus 650 ~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~l~~c~~ 686 (711)
++|+.|+|++ ++++++|.. +..+++|+.|++.++|.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 3688888888 678888763 45577888888887764
No 246
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.74 E-value=0.73 Score=42.12 Aligned_cols=42 Identities=24% Similarity=0.136 Sum_probs=27.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 44 (711)
|+||||.++.+++ .....-..+++..-.......+..+.++.
T Consensus 10 GsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 10 GSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 8999999999998 55555445666554444445555555554
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.72 E-value=0.39 Score=54.51 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=47.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHc-CCceEEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFV-EGEKFLLVLDDV 79 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~r~LlvlDdv 79 (711)
|+|||++|+.+++ ... ...+.++.+...... . ...+.+..+.-...++ ...+.+.+ +....+++||++
T Consensus 498 GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~----~-~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 498 GVGKTEVTVQLSK--ALG---IELLRFDMSEYMERH----T-VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp TSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSS----C-CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETG
T ss_pred CCcHHHHHHHHHH--Hhc---CCEEEEechhhcchh----h-HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCc
Confidence 8999999999997 332 233445544322210 0 0011112211111111 11112222 245689999999
Q ss_pred CCCCccCchhhHhhhccC-----------CCCCEEEEEecc
Q 039822 80 WNEDYCKWEPFYYCLKNC-----------LYGSKILITTRK 109 (711)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-----------~~~s~iivTtR~ 109 (711)
.....+....+...+... .....||.||..
T Consensus 567 ~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 567 EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp GGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred cccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 766555555555544321 123457777754
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.71 E-value=0.9 Score=42.95 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=42.6
Q ss_pred CccHHHHHHHHhcChhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------------CChhhHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKN----HFEKRIWVCVSDPFDEFRIARSIIEALTGSA------------PDVAEFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~~~~ 64 (711)
|+||||||..++....... .-..++|++....++...+. .+++.++... ....+.......+.
T Consensus 34 GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (243)
T 1n0w_A 34 RTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 112 (243)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHH
Confidence 8999999999887311111 12478899877765554433 3344443211 11122222233344
Q ss_pred HHcC-CceEEEEEeCC
Q 039822 65 EFVE-GEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l~-~~r~LlvlDdv 79 (711)
+.+. .+.-++|+|.+
T Consensus 113 ~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 113 AMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHSCEEEEEEETS
T ss_pred HHHhcCCceEEEEeCc
Confidence 4443 45678888887
No 249
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.40 E-value=1.2 Score=46.93 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=53.1
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe---------cc----h-h-hhhhhCCcCeEECCCCChhhHHHHH
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT---------RK----E-T-VACIMGSTDVISVNVLSEMECWSVF 136 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt---------R~----~-~-~~~~~~~~~~~~l~~L~~~ea~~Lf 136 (711)
-++++|++..-+.+..+.+...+...... .+|+.| .+ . . ..+....-..+.+++++.++..+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999665555566666555544333 344344 11 1 1 1112222346799999999999999
Q ss_pred HHHhcCCCCcchhhhHHHHHHHHHHhc-CCChHHHH
Q 039822 137 ESLAFFGNSMEERENLEKIGREIIRKC-KGLPLAAK 171 (711)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~ 171 (711)
...+...+.... .+.+..|++.+ +|.|....
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHH
Confidence 877532222111 12345566666 67775433
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.99 E-value=3.6 Score=46.50 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHHc-CCceEEEEEeCCCCCC--------ccCchhhHhhhccCCCCCEEEEEecchhhhhhh-------CCcCeE
Q 039822 59 LMQHIQEFV-EGEKFLLVLDDVWNED--------YCKWEPFYYCLKNCLYGSKILITTRKETVACIM-------GSTDVI 122 (711)
Q Consensus 59 ~~~~~~~~l-~~~r~LlvlDdv~~~~--------~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~~-------~~~~~~ 122 (711)
..+.+.+.+ ..++.+|++|++..-. ..+...+...+.. ..+..+|.+|......... .....+
T Consensus 266 ~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i 344 (758)
T 1r6b_X 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEE
Confidence 333333434 3457899999994321 0000111111111 1245677777654322111 112368
Q ss_pred ECCCCChhhHHHHHHHHh
Q 039822 123 SVNVLSEMECWSVFESLA 140 (711)
Q Consensus 123 ~l~~L~~~ea~~Lf~~~~ 140 (711)
.++..+.++..+++....
T Consensus 345 ~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 345 DITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHH
Confidence 899999999988887654
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.98 E-value=1.9 Score=40.26 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=51.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------------ChhhHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----------------------DVAEFQ 57 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------------------~~~~~~ 57 (711)
|+|||||++.++. .....=..++|+.... ....+...+. .++.... ...+.+
T Consensus 33 GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 2w0m_A 33 GTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPE 107 (235)
T ss_dssp TSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTTBCSSCCHH
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCceeeecCCCHH
Confidence 8999999999996 2322223567776544 2333333322 3221100 001333
Q ss_pred HHHHHHHHHc---CCceEEEEEeCCCCC---CccCchhhHhhhccC--CCCCEEEEEecch
Q 039822 58 SLMQHIQEFV---EGEKFLLVLDDVWNE---DYCKWEPFYYCLKNC--LYGSKILITTRKE 110 (711)
Q Consensus 58 ~~~~~~~~~l---~~~r~LlvlDdv~~~---~~~~~~~~~~~l~~~--~~~s~iivTtR~~ 110 (711)
+....+.+.+ +-++.++|+|..... +......+...+... ..+..||++|...
T Consensus 108 ~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 108 ELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred HHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4444444433 223359999998421 112223333333221 2467888888765
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.76 E-value=0.55 Score=47.44 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=42.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++.. ....=..++||+....++... +..++.... +....++....+++..+ .+.-+|
T Consensus 73 GsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lV 145 (356)
T 1u94_A 73 SSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 145 (356)
T ss_dssp TSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEE
Confidence 89999999999873 332223689999988777542 344432210 01123334444433332 344589
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|.+
T Consensus 146 VIDsl 150 (356)
T 1u94_A 146 VVDSV 150 (356)
T ss_dssp EEECG
T ss_pred EEcCH
Confidence 99997
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.62 E-value=0.9 Score=45.77 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=43.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++.. ....=..++|++....++.. .++.++.... +....++....++...+ .+.-+|
T Consensus 71 GsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI 143 (349)
T 2zr9_A 71 SSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII 143 (349)
T ss_dssp TSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred CCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE
Confidence 89999999999873 33222468899988777654 2444442211 11234444444554444 345689
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|.+
T Consensus 144 VIDsl 148 (349)
T 2zr9_A 144 VIDSV 148 (349)
T ss_dssp EEECG
T ss_pred EEcCh
Confidence 99998
No 254
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.75 E-value=1 Score=46.86 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=42.1
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCC-HHHHHHHHHHH--hc------CCCCChhhH-------HHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFD-EFRIARSIIEA--LT------GSAPDVAEF-------QSLMQHI 63 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~-~~~~~~~i~~~--l~------~~~~~~~~~-------~~~~~~~ 63 (711)
|+|||||+..+.. .....+ ...+++.+++..+ ..++++.+... +. ....+..-. .-...+.
T Consensus 161 GvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEy 238 (473)
T 1sky_E 161 GVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEY 238 (473)
T ss_dssp SSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999988 444434 3455666665543 44555545432 00 111110000 1111222
Q ss_pred HHHcCCceEEEEEeCC
Q 039822 64 QEFVEGEKFLLVLDDV 79 (711)
Q Consensus 64 ~~~l~~~r~LlvlDdv 79 (711)
.+..+++++|+++||+
T Consensus 239 Frd~~G~~VLl~~D~i 254 (473)
T 1sky_E 239 FRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHSCCEEEEEEECT
T ss_pred HHHhcCCcEEEEeccH
Confidence 2333688999999998
No 255
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.26 E-value=0.57 Score=39.50 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCcEEecCCCCCCccCCcc-ccCCccCceeccCCCC
Q 039822 392 NLQRLDVTYCKNLEELPPG-IGKLRKLMYLDNRWTH 426 (711)
Q Consensus 392 ~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 426 (711)
+|++|+|++|. |..+|.. +..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 57777777765 7777654 4667777777777763
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.54 E-value=2.6 Score=47.23 Aligned_cols=142 Identities=8% Similarity=0.084 Sum_probs=71.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+|||+||+++++ +...+| +.|+.+. +..... ..........+.+..+..+.+|++|+++
T Consensus 248 GTGKT~LAraiA~--elg~~~---~~v~~~~--------------l~sk~~-gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 248 GTGKTLIARAVAN--ETGAFF---FLINGPE--------------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp TSCHHHHHHHHHT--TTTCEE---EEEEHHH--------------HHSSCT-THHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred CCCHHHHHHHHHH--HhCCeE---EEEEhHH--------------hhcccc-hHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 8999999999998 343332 3333211 111111 1222223333344445678999999984
Q ss_pred CCCc------cC-chh----hHhhhccC--CCCCEEEEEecchhhhh-hh-C--C-cCeEECCCCChhhHHHHHHHHhcC
Q 039822 81 NEDY------CK-WEP----FYYCLKNC--LYGSKILITTRKETVAC-IM-G--S-TDVISVNVLSEMECWSVFESLAFF 142 (711)
Q Consensus 81 ~~~~------~~-~~~----~~~~l~~~--~~~s~iivTtR~~~~~~-~~-~--~-~~~~~l~~L~~~ea~~Lf~~~~~~ 142 (711)
.--. .+ -.. +...+... ..+..||.||...+..+ .+ . . ...++++..+.++=.++|......
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred ccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC
Confidence 3110 11 111 11111111 12445666776554332 11 1 1 347888888888888888765422
Q ss_pred CCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 143 GNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
... ..+-+ ...|++.+.|.-
T Consensus 388 ~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 388 MKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp SEE-CTTCC----HHHHHHHCCSCC
T ss_pred CCC-CcccC----HHHHHHhcCCCC
Confidence 111 11122 345677777664
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.53 E-value=0.69 Score=53.15 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=24.3
Q ss_pred ceEEEEEeCCCCCCccCchhhHhhhccCC-----------CCCEEEEEecc
Q 039822 70 EKFLLVLDDVWNEDYCKWEPFYYCLKNCL-----------YGSKILITTRK 109 (711)
Q Consensus 70 ~r~LlvlDdv~~~~~~~~~~~~~~l~~~~-----------~~s~iivTtR~ 109 (711)
..-+|+||++..........+...+.... .+..||+||..
T Consensus 660 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 660 PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 34689999996665555555555544321 23447777764
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.78 E-value=0.62 Score=42.34 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=25.1
Q ss_pred ccccCCcEEecCCCCCCc-----cCCccccCCccCceeccCCC
Q 039822 388 CELYNLQRLDVTYCKNLE-----ELPPGIGKLRKLMYLDNRWT 425 (711)
Q Consensus 388 ~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~ 425 (711)
.+-..|++|+|+++..+. .+-..+..-+.|+.|+|++|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 344678888888753343 24445566678888888887
No 259
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.91 E-value=3.3 Score=46.73 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhhhh-------hCCcCeEECCCCChhhHHHHHHHHh
Q 039822 68 EGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVACI-------MGSTDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 68 ~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
..++.+|++|.. .+....+...+. ....++|.||........ ......+.++..+.++..+++....
T Consensus 265 ~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 265 QAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 467789999922 112222322232 124567777765442111 1112578999999999999998654
No 260
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.84 E-value=2.3 Score=41.17 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=16.8
Q ss_pred cCeEECCCCChhhHHHHHHHHh
Q 039822 119 TDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 119 ~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
...+.++..+.++-.+++...+
T Consensus 202 ~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 202 DRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CCEEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 4578888888888888887654
No 261
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=81.87 E-value=4.1 Score=42.53 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=30.8
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEEEEeCCCCC-HHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIWVCVSDPFD-EFRIARSIIEA 45 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 45 (711)
|+|||+|+..+++ .+. .+-+.++|+-+++... ..++++.+...
T Consensus 175 GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 175 GVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp SSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 8999999999887 332 3346778888887664 56677776653
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.73 E-value=4.2 Score=40.19 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=28.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||+|.+++.+....+ ..++|++.. .+..++...++...
T Consensus 78 G~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 78 SMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 8999999999987422222 578888866 34556666665543
No 263
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=80.97 E-value=4.8 Score=41.78 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=29.9
Q ss_pred CccHHHHHHHHhcChhh-hccCCceEEEEeCCCCC-HHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDV-KNHFEKRIWVCVSDPFD-EFRIARSIIEA 45 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~-~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 45 (711)
|+|||+|+.++++ .+ +.+-+.++++-+++... ..++++.+...
T Consensus 163 G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 163 GVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 8999999999887 33 22335567777776654 56677777654
No 264
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.75 E-value=8.5 Score=40.63 Aligned_cols=63 Identities=8% Similarity=0.002 Sum_probs=34.3
Q ss_pred CCEEEEEecchhhhhh--hC---CcCeEECCCCChhhHHHHHHHHhcCCCCcchhhhHHHHHHHHHHhcCCCh
Q 039822 100 GSKILITTRKETVACI--MG---STDVISVNVLSEMECWSVFESLAFFGNSMEERENLEKIGREIIRKCKGLP 167 (711)
Q Consensus 100 ~s~iivTtR~~~~~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 167 (711)
+..++-||...+..+. .. -...+.++..+.++-.+++...+..... ..... ...+++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 3455666666654321 11 1347888888888888888765422111 11111 234666777765
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.02 E-value=3.5 Score=41.03 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=27.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||+|..++.+ ....=..++|++... +..++...++...
T Consensus 56 G~GKTt~al~ia~~--~a~~g~~Vl~fSlEm--s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 56 SMGKTSLMMNMVLS--ALNDDRGVAVFSLEM--SAEQLALRALSDL 97 (338)
T ss_dssp TSCHHHHHHHHHHH--HHHTTCEEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHHcCCeEEEEeCCC--CHHHHHHHHHHHh
Confidence 89999999999884 332223577877643 4455555555443
No 266
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.59 E-value=4.3 Score=40.81 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=41.5
Q ss_pred CccHHHHHHHHhcChhhhccC---C-ceEEEEeCCCCCHHHHHHHHHHHhcCC------------CCChhhHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF---E-KRIWVCVSDPFDEFRIARSIIEALTGS------------APDVAEFQSLMQHIQ 64 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F---~-~~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~~~~ 64 (711)
|+|||||+..++......... . .++||+....+....+ ..+++..... ........+....+.
T Consensus 141 GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~ 219 (349)
T 1pzn_A 141 GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAE 219 (349)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHH
Confidence 899999999998732112112 2 3589987665543332 3344433211 001112223344444
Q ss_pred HHcC------CceEEEEEeCC
Q 039822 65 EFVE------GEKFLLVLDDV 79 (711)
Q Consensus 65 ~~l~------~~r~LlvlDdv 79 (711)
..++ .+.-+||+|.+
T Consensus 220 ~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 220 DKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHhccccCCCCEEEEeCc
Confidence 4443 35678999987
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.51 E-value=3.4 Score=42.31 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=28.3
Q ss_pred CccHHHHHHHHhcChhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYNNDDVKN----HFEKRIWVCVSDPFDEFRIARSIIEALT 47 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 47 (711)
|+|||||+..++-.-.... .-..++|++....++...+. .+++.++
T Consensus 188 GsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 188 RTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 8999999997753111111 22458899887766655443 3555554
No 268
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=77.44 E-value=3.2 Score=42.89 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=42.4
Q ss_pred CccHHHHHHHHhcChhhhccCC----ceEEEEeCCCC-CHHHHHHHHHHH--hc------CCCCC-hhh---HHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE----KRIWVCVSDPF-DEFRIARSIIEA--LT------GSAPD-VAE---FQSLMQHI 63 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~~--l~------~~~~~-~~~---~~~~~~~~ 63 (711)
|+|||+|+.++++. ...+-+ .++++-+++.. ...++++.+... +. ...++ ... .-...-.+
T Consensus 161 G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ti 238 (465)
T 3vr4_D 161 GLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTA 238 (465)
T ss_dssp TSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 89999999998873 222223 45667677544 456666665543 11 11111 110 00111123
Q ss_pred HHHc---CCceEEEEEeCC
Q 039822 64 QEFV---EGEKFLLVLDDV 79 (711)
Q Consensus 64 ~~~l---~~~r~LlvlDdv 79 (711)
.+++ +++.+|+++||+
T Consensus 239 AEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 239 AEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHhcCCeEEEEEcCh
Confidence 3333 478999999998
No 269
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.94 E-value=6.2 Score=36.54 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=21.9
Q ss_pred CccHHHHHHHHhcChhh---hc-cCCceEEEEeCCCCCH
Q 039822 1 GIGKTTLAQLAYNNDDV---KN-HFEKRIWVCVSDPFDE 35 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~---~~-~F~~~~wv~~~~~~~~ 35 (711)
|+|||||++.++..... .. .-..++|+........
T Consensus 35 GsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 35 GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 89999999999752111 11 1235788876554443
No 270
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.88 E-value=2 Score=40.89 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=16.3
Q ss_pred cCeEECCCCChhhHHHHHHHHh
Q 039822 119 TDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 119 ~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
...+.++..+.++-.+++...+
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 178 DRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEECCSCCHHHHHHHHHHHH
T ss_pred CeEEeeCCcCHHHHHHHHHHHH
Confidence 3477888888888778876654
No 271
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.84 E-value=1.4 Score=44.52 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=20.8
Q ss_pred CccHHHHHHHHhcChhhhccC-Cc-eEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EK-RIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~-~~wv~~~~~~~ 34 (711)
|+|||||++.+++ .+.... +. ++++-+++...
T Consensus 184 G~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 184 KAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERPE 217 (422)
T ss_dssp SSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCHH
T ss_pred CCChhHHHHHHHH--HHhhcCCCeeEEEEEecCChH
Confidence 8999999999887 443322 22 44566775543
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.54 E-value=0.33 Score=43.94 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=25.6
Q ss_pred HcCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchh
Q 039822 66 FVEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKET 111 (711)
Q Consensus 66 ~l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~ 111 (711)
.+.++.-+|++|.+..-+. +|..+...+.+. +..||+|.+..+
T Consensus 72 ~~~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 72 YIEEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp GCCTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESBC
T ss_pred HhcCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeeccc
Confidence 3344567999999854332 344444333333 778999888543
No 273
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=74.66 E-value=3.5 Score=37.73 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.9
Q ss_pred CccHHHHHHHHhcChhhhccC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF 21 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F 21 (711)
|+||||.++.+++ .....+
T Consensus 12 GsGKsTq~~~L~~--~L~~~~ 30 (205)
T 4hlc_A 12 GSGKTTVINEVYH--RLVKDY 30 (205)
T ss_dssp TSCHHHHHHHHHH--HHTTTS
T ss_pred CCcHHHHHHHHHH--HHHCCC
Confidence 8999999999987 444444
No 274
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.13 E-value=1.2 Score=40.45 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=35.1
Q ss_pred hhcCccCCCeeecCcCCCCC-hhhhhHhhhcCCCCCceEEEEeecCCCCCcccccCCCCchhhHHHHhhccCCCCCccEE
Q 039822 462 LKKLNLLRACSIYGLGGVSD-GGKAAKAELEKKKYLFYLRLRFDDLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKNL 540 (711)
Q Consensus 462 L~~l~~L~~L~i~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 540 (711)
|..-+.|+.|+++++. +.+ ....+...+..-+.|+.|+|++|.+... ....+...+...+.|+.|
T Consensus 66 L~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~-------------Ga~ala~aL~~N~tL~~L 131 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPE-------------LLARLLRSTLVTQSIVEF 131 (197)
T ss_dssp HTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH-------------HHHHHHHHTTTTCCCSEE
T ss_pred HhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHH-------------HHHHHHHHHhhCCceeEE
Confidence 3334445555555432 111 1123334444555677777766644322 334455566666667777
Q ss_pred EEecc
Q 039822 541 AIRKY 545 (711)
Q Consensus 541 ~L~~~ 545 (711)
+|+++
T Consensus 132 ~L~n~ 136 (197)
T 1pgv_A 132 KADNQ 136 (197)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 77643
No 275
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.90 E-value=7.1 Score=41.52 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=28.1
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||+|.+++.+ ..... ..++|++...+ ..++...++...
T Consensus 252 G~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s--~~~l~~r~~~~~ 294 (503)
T 1q57_A 252 GMVMSTFVRQQALQ--WGTAMGKKVGLAMLEES--VEETAEDLIGLH 294 (503)
T ss_dssp CHHHHHHHHHHHHH--HTTTSCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH--HHHhcCCcEEEEeccCC--HHHHHHHHHHHH
Confidence 89999999999873 33322 26788877553 456666655444
No 276
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.69 E-value=4.1 Score=46.21 Aligned_cols=120 Identities=9% Similarity=0.108 Sum_probs=58.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHcCCceEEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPDVAEFQSLMQHIQEFVEGEKFLLVLDDVW 80 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~r~LlvlDdv~ 80 (711)
|+||||||+.++. .....| +.+... .+..... ..........+.+.......++++|++.
T Consensus 248 GtGKTtLarala~--~l~~~~---i~v~~~--------------~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 248 GTGKTLIARAVAN--ETGAFF---FLINGP--------------EIMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp TSSHHHHHHHHHH--TTTCEE---EEEEHH--------------HHSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred CCCHHHHHHHHHH--HcCCcE---EEEEch--------------Hhhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 8999999999987 333332 333321 1111111 1111122222233333457899999983
Q ss_pred CCCc------cC-----chhhHhhhccC--CCCCEEEEEecchhhhh-hhC---C-cCeEECCCCChhhHHHHHHHHh
Q 039822 81 NEDY------CK-----WEPFYYCLKNC--LYGSKILITTRKETVAC-IMG---S-TDVISVNVLSEMECWSVFESLA 140 (711)
Q Consensus 81 ~~~~------~~-----~~~~~~~l~~~--~~~s~iivTtR~~~~~~-~~~---~-~~~~~l~~L~~~ea~~Lf~~~~ 140 (711)
.... .+ ...+...+... ..+..+|.||...+..+ .+. . ...+.+...+.++-.+++...+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp GTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred HhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 2111 00 11122222211 12446666666543221 111 1 2356778888888888887654
No 277
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=71.53 E-value=7.9 Score=35.61 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 16 gsGKsT~~~~l~~ 28 (213)
T 4edh_A 16 GAGKSTNRDYLAE 28 (213)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.60 E-value=5.9 Score=38.68 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=19.0
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~ 31 (711)
|+||||++..++. .....- ..+.++....
T Consensus 115 GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 115 GAGKTTTLAKLAA--ISMLEKHKKIAFITTDT 144 (296)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCCEEEEECCC
T ss_pred CCCHHHHHHHHHH--HHHHhcCCEEEEEecCc
Confidence 8999999999987 333211 2456666443
No 279
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=69.07 E-value=13 Score=38.89 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=40.5
Q ss_pred CccHHHHH-HHHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCChhhH----HHHHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEALT--------GSAPDVAEF----QSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~~~~~----~~~~~~~~~ 65 (711)
|+|||+|| ..+.+ + .+-+. ++++-+++... ..++.+.+...-. ....+..-. --....+.+
T Consensus 172 g~GKT~l~l~~I~n--~--~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAE 247 (513)
T 3oaa_A 172 QTGKTALAIDAIIN--Q--RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGE 247 (513)
T ss_dssp SSSHHHHHHHHHHT--T--SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHh--h--ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHHH
Confidence 79999996 45665 2 23343 56888887654 5566666544311 011111000 001111222
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++.+|+++||+
T Consensus 248 yfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 248 YFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHTTCEEEEEEETH
T ss_pred HHHhcCCCEEEEecCh
Confidence 22 589999999998
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.98 E-value=11 Score=36.92 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=37.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH--HHHHHHHHHhcCC---CCChhhHHH-HHHHHHHHcCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF--RIARSIIEALTGS---APDVAEFQS-LMQHIQEFVEGEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~-~~~~~~~~l~~~r~Ll 74 (711)
|+||||++..++. ..+..=..+.++.... +... +-++..++..+.. .....+... ....+.+.+..+.=++
T Consensus 114 GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvv 190 (306)
T 1vma_A 114 GTGKTTSCGKLAK--MFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVV 190 (306)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CChHHHHHHHHHH--HHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999997 4443322455665432 2222 1122334443321 001112222 2233444444445578
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|-.
T Consensus 191 IiDtp 195 (306)
T 1vma_A 191 IIDTA 195 (306)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 88876
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=68.69 E-value=19 Score=37.21 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||++.+++.
T Consensus 110 G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 110 GSGKTTTVAKLAR 122 (443)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998886
No 282
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=68.34 E-value=4.3 Score=42.40 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=40.2
Q ss_pred CccHHHHHH-HHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCChhhHH----HHHHHHHH
Q 039822 1 GIGKTTLAQ-LAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEALT--------GSAPDVAEFQ----SLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla~-~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~----~~~~~~~~ 65 (711)
|+|||+||. .+++ .. +-+. ++++-+++... ..++.+.+...-. ...++..... ...-.+.+
T Consensus 172 g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAE 247 (502)
T 2qe7_A 172 QTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGE 247 (502)
T ss_dssp SSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 899999964 6666 22 3443 46777776554 5566666554211 1111111000 01112222
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++.+|+++||+
T Consensus 248 yfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 248 YFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHTTTCEEEEEEECH
T ss_pred HHHHcCCcEEEEEecH
Confidence 22 588999999997
No 283
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=68.21 E-value=9.6 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=19.7
Q ss_pred CccHHHHHHHHhcChhhhccC-Cc-eEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EK-RIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~-~~wv~~~~~~ 33 (711)
|+|||+|+.++++ .+.... +. ++++-+++..
T Consensus 185 g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 185 KAGKTTILKEIAN--GIAENHPDTIRIILLIDERP 217 (427)
T ss_dssp TCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCCH
T ss_pred CCChhHHHHHHHH--HHhhcCCCeEEEEEEeccCc
Confidence 8999999999888 443222 22 3456666543
No 284
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=67.29 E-value=7.6 Score=40.06 Aligned_cols=79 Identities=11% Similarity=0.247 Sum_probs=41.6
Q ss_pred CccHHHHHHHHhcChhhh--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHH--hc--------CCCCChhhH--HH
Q 039822 1 GIGKTTLAQLAYNNDDVK--------NHFE-KRIWVCVSDPF-DEFRIARSIIEA--LT--------GSAPDVAEF--QS 58 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~--l~--------~~~~~~~~~--~~ 58 (711)
|+|||+|+.++++..... ++=+ .++++-+++.. ...++.+.+... +. .+.+..... -.
T Consensus 157 G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~ 236 (464)
T 3gqb_B 157 GLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPR 236 (464)
T ss_dssp TSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHH
Confidence 899999999988732221 1111 45566677544 455666655442 11 011111110 11
Q ss_pred HHHHHHHHc---CCceEEEEEeCC
Q 039822 59 LMQHIQEFV---EGEKFLLVLDDV 79 (711)
Q Consensus 59 ~~~~~~~~l---~~~r~LlvlDdv 79 (711)
..-.+.+++ +++.+|+++||+
T Consensus 237 ~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 237 MALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111233333 478999999998
No 285
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=67.18 E-value=12 Score=34.45 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=24.7
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEEEEeCCCCCHHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIWVCVSDPFDEFRIARSIIE 44 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~ 44 (711)
|+||||.++.+.+ ... ..+..+++..-.......+..+.++.
T Consensus 13 gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 13 GAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp TSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 8999999999987 443 23434444443333234455555554
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.99 E-value=1.7 Score=38.64 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 13 GsGKST~a~~La~ 25 (178)
T 1qhx_A 13 SAGKSGIVRCLQS 25 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 287
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=65.13 E-value=8.1 Score=40.43 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=40.7
Q ss_pred CccHHHHH-HHHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCChhhH----HHHHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEALT--------GSAPDVAEF----QSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~~~~~----~~~~~~~~~ 65 (711)
|+|||+|| ..+++. . .-+. ++++-+++... ..++.+.+...-. ...++.... ......+.+
T Consensus 185 g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAE 260 (515)
T 2r9v_A 185 QTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGE 260 (515)
T ss_dssp TSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 89999996 466662 2 2443 46777776554 5566666654210 111111100 011112223
Q ss_pred Hc--CCceEEEEEeCC
Q 039822 66 FV--EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l--~~~r~LlvlDdv 79 (711)
++ +++.+|+++||+
T Consensus 261 yfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 261 YFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHTTTCEEEEEEETH
T ss_pred HHHHcCCcEEEEeccH
Confidence 22 588999999997
No 288
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=64.95 E-value=13 Score=38.54 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=21.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+||||+|.+++.+ ....=..++|++...+.
T Consensus 207 G~GKTtlal~ia~~--~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 207 SMGKTAFALKQAKN--MSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp SSSHHHHHHHHHHH--HHHTTCEEEEECSSSCT
T ss_pred CCChHHHHHHHHHH--HHHcCCEEEEEECCCCH
Confidence 89999999999984 33221257788766543
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.89 E-value=2.2 Score=37.62 Aligned_cols=13 Identities=23% Similarity=-0.036 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 11 GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 11 CCFKSTVAAKLSK 23 (173)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 290
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=63.58 E-value=6.7 Score=35.26 Aligned_cols=13 Identities=46% Similarity=0.519 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 10 GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 10 GSGKSTQIQLLAQ 22 (197)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 291
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=63.09 E-value=6.3 Score=41.23 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=39.9
Q ss_pred CccHHHHH-HHHhcChhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHh--c------CCCCC--h-----hhHHHHHHH
Q 039822 1 GIGKTTLA-QLAYNNDDVKNHFEK-RIWVCVSDPFD-EFRIARSIIEAL--T------GSAPD--V-----AEFQSLMQH 62 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l--~------~~~~~--~-----~~~~~~~~~ 62 (711)
|+|||+|| ..+++. . .-+. ++++-+++... ..++.+.+...- . ...++ . ....-...+
T Consensus 173 g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAE 248 (507)
T 1fx0_A 173 QTGKTAVATDTILNQ--Q--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE 248 (507)
T ss_dssp SSSHHHHHHHHHHTC--C--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 89999996 477762 2 2343 46777776554 455555554321 0 01111 0 111111222
Q ss_pred HHHHcCCceEEEEEeCC
Q 039822 63 IQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 63 ~~~~l~~~r~LlvlDdv 79 (711)
..+. +++.+|+++||+
T Consensus 249 yfrd-~G~dVLli~Dsl 264 (507)
T 1fx0_A 249 YFMY-RERHTLIIYDDL 264 (507)
T ss_dssp HHHH-TTCEEEEEEECH
T ss_pred HHHH-cCCcEEEEEecH
Confidence 2233 589999999997
No 292
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=62.91 E-value=30 Score=36.04 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCCHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFDEFRIARSII 43 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~ 43 (711)
|+||||+|..++.+ ....- ..++|++...+ ...+...++
T Consensus 213 G~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 213 SVGKTAFALNIAQN--VATKTNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp TSCHHHHHHHHHHH--HHHHSSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHHhCCCcEEEEECCCC--HHHHHHHHH
Confidence 89999999999983 33322 25788876543 345555543
No 293
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=62.66 E-value=6 Score=36.62 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=19.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|..++. .....=..+.++.+..
T Consensus 16 GvGKTt~a~~la~--~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 16 GVGKTYAMLQAAH--AQLRQGVRVMAGVVET 44 (228)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred CCcHHHHHHHHHH--HHHHCCCCEEEEEeCC
Confidence 8999999998887 3333222455555554
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=61.77 E-value=4.7 Score=36.10 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 11 GsGKsT~~~~L~~ 23 (194)
T 1nks_A 11 GVGKSTVLAKVKE 23 (194)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 295
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=61.77 E-value=6.5 Score=40.77 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCC-hhh---HHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSDPF-DEFRIARSIIEALT--------GSAPD-VAE---FQSLMQHIQE 65 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~-~~~---~~~~~~~~~~ 65 (711)
|+|||+|+.+++++......= +.++++-+++.. ...++.+.+...-. ...++ ... .-...-.+.+
T Consensus 162 G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAE 241 (469)
T 2c61_A 162 GLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAE 241 (469)
T ss_dssp TSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 899999999988742221111 245666666554 45666666665311 11111 100 0111122333
Q ss_pred Hc---CCceEEEEEeCC
Q 039822 66 FV---EGEKFLLVLDDV 79 (711)
Q Consensus 66 ~l---~~~r~LlvlDdv 79 (711)
++ +++.+|+++||+
T Consensus 242 yfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 242 YLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHCCEEEEEEECH
T ss_pred HHHHhcCCeEEEEEeCH
Confidence 33 478999999996
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.65 E-value=2.7 Score=37.30 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 12 GsGKST~a~~L~~ 24 (181)
T 1ly1_A 12 GSGKSTWAREFIA 24 (181)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 297
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.57 E-value=3.1 Score=37.44 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 19 GsGKSTl~~~La~ 31 (191)
T 1zp6_A 19 GSGKSTIAEALAN 31 (191)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 298
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=61.50 E-value=13 Score=38.80 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=41.1
Q ss_pred CccHHHHH-HHHhcChhhh------ccCCc-eEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCChhhHH----HH
Q 039822 1 GIGKTTLA-QLAYNNDDVK------NHFEK-RIWVCVSDPFD-EFRIARSIIEALT--------GSAPDVAEFQ----SL 59 (711)
Q Consensus 1 GiGKTtla-~~~~~~~~~~------~~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~----~~ 59 (711)
|+|||+|| ..+++ ... ++-+. ++++-+++... ..++.+.+...-. ...++..... ..
T Consensus 172 g~GKT~Lal~~I~~--q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~ 249 (510)
T 2ck3_A 172 QTGKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS 249 (510)
T ss_dssp TSSHHHHHHHHHHH--THHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH--HHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHH
Confidence 89999995 46665 233 12443 66777876554 5566666654210 1111110000 01
Q ss_pred HHHHHHHc--CCceEEEEEeCC
Q 039822 60 MQHIQEFV--EGEKFLLVLDDV 79 (711)
Q Consensus 60 ~~~~~~~l--~~~r~LlvlDdv 79 (711)
.-.+.+++ +++.+|+++||+
T Consensus 250 a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 250 GCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHcCCcEEEEEcCH
Confidence 11222322 588999999998
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=61.41 E-value=6.3 Score=36.68 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=11.4
Q ss_pred CccHHHHHHHHhcChhhhc
Q 039822 1 GIGKTTLAQLAYNNDDVKN 19 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~ 19 (711)
|+||||+++.+++ ....
T Consensus 35 GsGKsT~~~~l~~--~l~~ 51 (227)
T 3v9p_A 35 GAGKTTHLQWFCD--RLQE 51 (227)
T ss_dssp ---CHHHHHHHHH--HHHH
T ss_pred CCCHHHHHHHHHH--HHHh
Confidence 8999999999998 4544
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.20 E-value=1.8 Score=43.67 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=31.8
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhhh
Q 039822 60 MQHIQEFVEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETVA 113 (711)
Q Consensus 60 ~~~~~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~ 113 (711)
...+.+.|...+=+|++|.+.+ .+.+..+.... ..|.-||+||-..+.+
T Consensus 186 ~~~La~aL~~~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 186 SEALRSALREDPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHHHTTSCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHHHHHHhhhCcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 3467888888888999999954 33344333332 2366688888766544
No 301
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=60.99 E-value=17 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=18.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCV 29 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~ 29 (711)
|+||||++..++. .....=..+..+..
T Consensus 108 GsGKTT~~~~LA~--~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 108 GSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (425)
T ss_dssp TSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEeec
Confidence 8999999999987 44433224555554
No 302
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=60.97 E-value=4.7 Score=36.96 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=43.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHHcCCceEEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAPD--VAEFQSLMQHIQEFVEGEKFLLVLDD 78 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~r~LlvlDd 78 (711)
|.||||.|...+.+ ....=..++.+.... +.+.-...+.+.++..... ..+. ..+.+...++-=+|++|.
T Consensus 38 gsGKTT~lL~~a~r--~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~~~~~dvViIDE 109 (214)
T 2j9r_A 38 FSGKSEELIRRVRR--TQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSAS----KDIFKHITEEMDVIAIDE 109 (214)
T ss_dssp TSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSG----GGGGGGCCSSCCEEEECC
T ss_pred CCcHHHHHHHHHHH--HHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCH----HHHHHHHhcCCCEEEEEC
Confidence 78999999888873 333333444444221 1111222345544322110 0111 122333333334999999
Q ss_pred CCCCCccCchhhHhhhccCCCCCEEEEEecchh
Q 039822 79 VWNEDYCKWEPFYYCLKNCLYGSKILITTRKET 111 (711)
Q Consensus 79 v~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~ 111 (711)
+.--+.+.. .+...+.+ .+-.||+|-++.+
T Consensus 110 aQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 110 VQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp GGGSCTTHH-HHHHHHHH--TTCEEEEEECSBC
T ss_pred cccCCHHHH-HHHHHHhh--CCCEEEEEecccc
Confidence 843332233 22232222 2778999999665
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=60.84 E-value=33 Score=35.58 Aligned_cols=42 Identities=12% Similarity=-0.007 Sum_probs=27.6
Q ss_pred CccHHHHHHHHhcChhhhccC-CceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF-EKRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+||||+|.+++.+ ..... ..++|++... +..++...++...
T Consensus 210 g~GKT~lal~ia~~--~a~~~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 210 AMGKTAFALTIAQN--AALKEGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TSCHHHHHHHHHHH--HHHTTCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHHhCCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 89999999999983 33222 3578887764 3455666655443
No 304
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=60.81 E-value=10 Score=40.11 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSI 42 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 42 (711)
|+|||+|+.++++. .+-+.++++-+++... ..++++.+
T Consensus 237 g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 237 GSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp SHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 79999999998762 2335677888887665 45555554
No 305
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=60.77 E-value=16 Score=34.14 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=18.3
Q ss_pred CccHHHHHHHHhcChhhh-ccCCceEEEEe
Q 039822 1 GIGKTTLAQLAYNNDDVK-NHFEKRIWVCV 29 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~-~~F~~~~wv~~ 29 (711)
|+||||+++.+.+ ... ..++.+....-
T Consensus 37 GsGKsT~~~~l~~--~l~~~~~~~~~~~re 64 (236)
T 3lv8_A 37 GAGKSTAIQVVVE--TLQQNGIDHITRTRE 64 (236)
T ss_dssp TSCHHHHHHHHHH--HHHHTTCCCEEEEES
T ss_pred CCCHHHHHHHHHH--HHHhcCCCeeeeecC
Confidence 8999999999998 443 33443554443
No 306
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=60.22 E-value=7.8 Score=35.38 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=17.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+||||+|+.+.+ +....+-.+..+
T Consensus 19 GsGKsT~~~~L~~--~l~~~~~~v~~~ 43 (215)
T 1nn5_A 19 RAGKSTQSRKLVE--ALCAAGHRAELL 43 (215)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 8999999999997 444333333333
No 307
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.05 E-value=9.5 Score=47.27 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+|||+||.+++.. ....=..++|+++.+..+... ++.++.... .....++....+++..+ .+.-+|
T Consensus 1437 GtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lV 1509 (2050)
T 3cmu_A 1437 SSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1509 (2050)
T ss_dssp TSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEE
Confidence 89999999999873 222213688999888887776 344431110 11223345555555443 456799
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|.+
T Consensus 1510 VIDsi 1514 (2050)
T 3cmu_A 1510 VVDSV 1514 (2050)
T ss_dssp EESCG
T ss_pred EEcCh
Confidence 99998
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.79 E-value=3.4 Score=36.43 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 14 GsGKSTl~~~La~ 26 (173)
T 1kag_A 14 GAGKSTIGRQLAQ 26 (173)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=59.78 E-value=3 Score=37.24 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 15 GsGKst~a~~La~ 27 (185)
T 3trf_A 15 GAGKTSVGSQLAK 27 (185)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.32 E-value=3.4 Score=36.32 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=10.6
Q ss_pred CccHHHHHHHH
Q 039822 1 GIGKTTLAQLA 11 (711)
Q Consensus 1 GiGKTtla~~~ 11 (711)
|+||||+|+.+
T Consensus 11 GsGKsT~a~~L 21 (179)
T 3lw7_A 11 GSGKSEFAKLL 21 (179)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89999999998
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.15 E-value=3.5 Score=36.76 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||++.++..
T Consensus 10 GsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 10 GVGKTTLVKKIVER 23 (178)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998873
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=59.09 E-value=3.2 Score=37.84 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 28 GsGKSTla~~L~~ 40 (202)
T 3t61_A 28 GSGKSSVGEAIAE 40 (202)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.96 E-value=3.2 Score=37.75 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 35 GsGKsTl~~~La~ 47 (199)
T 3vaa_A 35 GAGKTTLGKAFAR 47 (199)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 314
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.78 E-value=6.9 Score=35.49 Aligned_cols=33 Identities=18% Similarity=-0.007 Sum_probs=23.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDE 35 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 35 (711)
|+||||+|..++. .....=..++.|+.....+.
T Consensus 12 G~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 12 GSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHH
T ss_pred CccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCH
Confidence 8999999999988 44443346778887654433
No 315
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=58.64 E-value=7.8 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=23.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDE 35 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 35 (711)
|+||||+|..++. .....= .++.|+.....+.
T Consensus 11 GvGKTT~a~~LA~--~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 11 GVGKTTTAVHLSA--YLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp TSSHHHHHHHHHH--HHHTTS-CEEEEEECTTCHH
T ss_pred CCcHHHHHHHHHH--HHHhcC-CEEEEECCCCCCH
Confidence 8999999999987 444433 6788887765443
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=58.54 E-value=3.3 Score=37.66 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 10 GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 10 GAGKSTISAEISK 22 (205)
T ss_dssp TSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 8999999999987
No 317
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=58.53 E-value=18 Score=35.77 Aligned_cols=13 Identities=46% Similarity=0.401 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 139 GaGKTTll~~Lag 151 (328)
T 3e70_C 139 GSGKTTTIAKLAN 151 (328)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.37 E-value=3.3 Score=37.13 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 13 GsGKsT~~~~L~~ 25 (192)
T 1kht_A 13 GVGSTTSSQLAMD 25 (192)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=58.14 E-value=5.7 Score=35.46 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 23 GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 23 GSGKTTIATRLAD 35 (186)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.14 E-value=7.5 Score=35.40 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 14 GsGKsT~~~~L~~ 26 (213)
T 2plr_A 14 GSGKSSQATLLKD 26 (213)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 321
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=57.69 E-value=12 Score=36.48 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=25.5
Q ss_pred CccHHHHHHHHhcChhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHh
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFE-KRIWVCVSDPFDEFRIARSIIEAL 46 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l 46 (711)
|+|||||++.++. .....-. .++|+.... +..++.+.+....
T Consensus 45 G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 45 GMGKSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TSSHHHHHHHHHH--HHHHTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHHcCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 8999999999987 3333322 466776543 3344444444433
No 322
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=57.56 E-value=11 Score=46.67 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++.+ ....=..++|++.....+... ++.++.... +....++....+++..+ .+.-+|
T Consensus 393 GsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lI 465 (2050)
T 3cmu_A 393 SSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 465 (2050)
T ss_dssp TSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 89999999999984 333223688999888887652 455543211 12344555555554432 345689
Q ss_pred EEeCCC
Q 039822 75 VLDDVW 80 (711)
Q Consensus 75 vlDdv~ 80 (711)
|+|-+.
T Consensus 466 VIDSL~ 471 (2050)
T 3cmu_A 466 VVDSVA 471 (2050)
T ss_dssp EESCGG
T ss_pred EECCHH
Confidence 999973
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.48 E-value=3.5 Score=36.45 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 14 GsGKsTla~~La~ 26 (175)
T 1via_A 14 GSGKSTLARALAK 26 (175)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 324
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=57.25 E-value=6.4 Score=36.93 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=20.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|.+++. .....=..++|++...
T Consensus 33 GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 33 GTGKTIFSQQFLW--NGLKMGEPGIYVALEE 61 (247)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEESSS
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEEccC
Confidence 8999999998876 3333224688887654
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=57.19 E-value=11 Score=33.63 Aligned_cols=13 Identities=54% Similarity=0.700 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 10 GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 10 GSGKTTQAKKLYE 22 (195)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 326
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.02 E-value=24 Score=36.34 Aligned_cols=28 Identities=32% Similarity=0.055 Sum_probs=18.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+||||++.+++. ..+..=..+..++..
T Consensus 107 GsGKTTt~~kLA~--~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 107 GSGKTTTAGKLAY--FYKKRGYKVGLVAAD 134 (433)
T ss_dssp TSCHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEEecC
Confidence 8999999999987 333322244455533
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.66 E-value=6.6 Score=34.54 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=14.3
Q ss_pred CccHHHHHHHHhcChhhhcc
Q 039822 1 GIGKTTLAQLAYNNDDVKNH 20 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~ 20 (711)
|+||||++.++.. .....
T Consensus 14 GsGKTTl~~~L~~--~l~~~ 31 (169)
T 1xjc_A 14 HSGKTTLMEKWVA--AAVRE 31 (169)
T ss_dssp TSSHHHHHHHHHH--HHHHT
T ss_pred CCCHHHHHHHHHH--hhHhc
Confidence 8999999999987 44443
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.52 E-value=3.7 Score=36.88 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 15 GsGKST~~~~L~~ 27 (193)
T 2rhm_A 15 ATGKTTLSQALAT 27 (193)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.12 E-value=23 Score=34.39 Aligned_cols=77 Identities=16% Similarity=0.024 Sum_probs=38.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC---CCChhhHHHHHHHHHHHcC-CceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD-EFRIARSIIEALTGS---APDVAEFQSLMQHIQEFVE-GEKFLLV 75 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~~~~l~-~~r~Llv 75 (711)
|+||||++..++. .....=..+.+++...... ....++......+.. .....+..+......+.++ .+-=++|
T Consensus 108 G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~Vi 185 (297)
T 1j8m_F 108 GTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIII 185 (297)
T ss_dssp CSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 8999999999987 3443323566776553332 222223334443321 1111223333333333343 3333788
Q ss_pred EeCC
Q 039822 76 LDDV 79 (711)
Q Consensus 76 lDdv 79 (711)
+|-.
T Consensus 186 IDTp 189 (297)
T 1j8m_F 186 VDTA 189 (297)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8886
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.87 E-value=19 Score=43.96 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=45.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcC-CceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVE-GEKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~-~~r~Ll 74 (711)
|+||||||.+++.. ....=..++|++.....+... ++.++.... +....++....+++..+ .+.-+|
T Consensus 742 G~GKTtLal~lA~~--aa~~g~~VlyiS~Ees~~ql~-----A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~lV 814 (1706)
T 3cmw_A 742 SSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 814 (1706)
T ss_dssp TSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCcHHHHHHHHHH--HHHcCCCeEEEeccchHHHHH-----HHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCEE
Confidence 89999999999983 333223688998887776542 455542210 11234455555554332 345689
Q ss_pred EEeCCCC
Q 039822 75 VLDDVWN 81 (711)
Q Consensus 75 vlDdv~~ 81 (711)
|+|.+.-
T Consensus 815 VIDsLq~ 821 (1706)
T 3cmw_A 815 VVDSVAA 821 (1706)
T ss_dssp EESCSTT
T ss_pred EEechhh
Confidence 9999843
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=55.78 E-value=3.9 Score=35.82 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 17 GsGKSTva~~La~ 29 (168)
T 1zuh_A 17 GSGKSSLAQELGL 29 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 332
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=55.66 E-value=15 Score=34.37 Aligned_cols=13 Identities=54% Similarity=0.623 Sum_probs=11.6
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|.|||.+|..++.
T Consensus 118 G~GKT~~a~~~~~ 130 (237)
T 2fz4_A 118 GSGKTHVAMAAIN 130 (237)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988876
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=55.58 E-value=4.4 Score=36.13 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 15 GsGKSTL~~~L~~ 27 (180)
T 1kgd_A 15 GVGRRHIKNTLIT 27 (180)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 334
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.56 E-value=5 Score=35.91 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 11 GaGKsTl~~~L~~ 23 (186)
T 3a00_A 11 GTGKSTLLKKLFA 23 (186)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 335
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=54.49 E-value=4.6 Score=36.68 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=17.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+++.++. .. +.++++...
T Consensus 39 GsGKSTl~~~L~~--~~-----g~~~i~~d~ 62 (200)
T 4eun_A 39 GSGKTTIAHGVAD--ET-----GLEFAEADA 62 (200)
T ss_dssp TSCHHHHHHHHHH--HH-----CCEEEEGGG
T ss_pred CCCHHHHHHHHHH--hh-----CCeEEcccc
Confidence 8999999999986 33 456666443
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=54.30 E-value=4.7 Score=36.65 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 35 GsGKSTl~~~La~ 47 (200)
T 3uie_A 35 GSGKSTLACALNQ 47 (200)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 337
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.30 E-value=17 Score=35.33 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=18.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+||||++..++. ..+..=..+.++...
T Consensus 108 G~GKTT~~~~la~--~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 108 GSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (295)
T ss_dssp TTTHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCHHHHHHHHHH--HHHHcCCeEEEecCC
Confidence 8999999999997 444332345555543
No 338
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=54.29 E-value=4.2 Score=38.70 Aligned_cols=13 Identities=31% Similarity=0.205 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 11 GSGKSTla~~La~ 23 (253)
T 2ze6_A 11 CSGKTDMAIQIAQ 23 (253)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 8999999999986
No 339
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.24 E-value=4.7 Score=36.16 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 12 GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 12 GVGKSTTCKRLAA 24 (189)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 8999999999974
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=54.24 E-value=27 Score=33.73 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=23.5
Q ss_pred CccHHHHHHHHhcChhhhcc---CCceEEEEeCCCCCHHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNH---FEKRIWVCVSDPFDEFRIARSII 43 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~---F~~~~wv~~~~~~~~~~~~~~i~ 43 (711)
|+||||+|+.+.. ..... ...+..|+...-.-.......+.
T Consensus 41 GsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 41 GSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp TSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 8999999999887 33221 23445546554333334444443
No 341
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.08 E-value=4.7 Score=35.57 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=13.7
Q ss_pred HHHHHHcCCceEEEEEeCC
Q 039822 61 QHIQEFVEGEKFLLVLDDV 79 (711)
Q Consensus 61 ~~~~~~l~~~r~LlvlDdv 79 (711)
-.+.+.+..+.-++++|.-
T Consensus 92 v~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 92 IEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp HHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHcCCcEEEEEEeCC
Confidence 3466677777888888875
No 342
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=54.02 E-value=4.9 Score=34.98 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|.|||||++.++.
T Consensus 43 GaGKTTLlr~l~g 55 (158)
T 1htw_A 43 GAGKTTLTRGMLQ 55 (158)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=54.01 E-value=4.4 Score=35.64 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 12 GsGKsT~a~~La~ 24 (173)
T 1e6c_A 12 GCGMTTVGRELAR 24 (173)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 344
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.97 E-value=4.8 Score=35.51 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 18 GsGKSTl~~~l~~ 30 (175)
T 1knq_A 18 GSGKSAVASEVAH 30 (175)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 345
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.84 E-value=4.8 Score=36.59 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 17 GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 17 GAGKTSLVRALVK 29 (205)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.77 E-value=4.4 Score=36.16 Aligned_cols=13 Identities=38% Similarity=0.337 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 14 GsGKST~~~~La~ 26 (186)
T 3cm0_A 14 GAGKGTQASRLAQ 26 (186)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=53.63 E-value=4.4 Score=36.39 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 13 GsGKsT~a~~L~~ 25 (196)
T 1tev_A 13 GAGKGTQCARIVE 25 (196)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=53.45 E-value=4.5 Score=35.34 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 10 GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 10 CSGKSTVGSLLSR 22 (168)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 349
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.23 E-value=4.5 Score=35.89 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 21 GsGKst~~~~l~~ 33 (180)
T 3iij_A 21 GVGKTTLGKELAS 33 (180)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.88 E-value=4.6 Score=35.97 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 12 GsGKsT~a~~La~ 24 (184)
T 2iyv_A 12 GSGKSTIGRRLAK 24 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.67 E-value=4.9 Score=36.24 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 22 GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 22 GSGKGTQCEKLVE 34 (199)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=51.61 E-value=8.3 Score=35.14 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 20 GsGKST~~~~L~~ 32 (212)
T 2wwf_A 20 RSGKSTQSKLLVE 32 (212)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 353
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=51.53 E-value=5.4 Score=36.46 Aligned_cols=13 Identities=54% Similarity=0.470 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 16 GsGKSTl~~~l~~ 28 (211)
T 3asz_A 16 ASGKTTLAQALAR 28 (211)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 354
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.41 E-value=5 Score=36.48 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 11 GsGKSTl~~~L~~ 23 (204)
T 2if2_A 11 GCGKSTVAQMFRE 23 (204)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 8999999999875
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=51.37 E-value=5 Score=36.08 Aligned_cols=13 Identities=31% Similarity=0.343 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 19 GsGKsT~~~~La~ 31 (196)
T 2c95_A 19 GSGKGTQCEKIVQ 31 (196)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 356
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.25 E-value=4.7 Score=36.93 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 32 GsGKSTl~~~l~~ 44 (208)
T 3c8u_A 32 GSGKSTLSNPLAA 44 (208)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 357
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.80 E-value=5.2 Score=35.72 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 20 GsGKSTv~~~La~ 32 (184)
T 1y63_A 20 GTGKTSMAEMIAA 32 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 358
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=50.44 E-value=3.9 Score=36.74 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++++..
T Consensus 11 G~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 11 GTGKSTLLKKLFA 23 (186)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999876
No 359
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=50.28 E-value=12 Score=34.68 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 31 g~GKst~~~~l~~ 43 (223)
T 3ld9_A 31 GSGKTTQSHLLAE 43 (223)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999998
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.06 E-value=5.4 Score=36.17 Aligned_cols=13 Identities=38% Similarity=0.302 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 30 GsGKST~a~~La~ 42 (201)
T 2cdn_A 30 GAGKGTQAVKLAE 42 (201)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 361
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.91 E-value=14 Score=36.58 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=24.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 36 (711)
|+||||+|..++. ..+..=..++-|+.....+..
T Consensus 24 GvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 24 GVGKTTISAATAL--WMARSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECCSSCCHH
T ss_pred CchHHHHHHHHHH--HHHHCCCcEEEEeCCCCcCHH
Confidence 8999999999887 454443467778766554444
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.72 E-value=4 Score=36.32 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=8.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 15 GsGKST~a~~La~ 27 (183)
T 2vli_A 15 GVGKTHTAHTLHE 27 (183)
T ss_dssp ----CHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999876
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.71 E-value=5.5 Score=36.26 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 22 GsGKsTl~~~L~~ 34 (204)
T 2qor_A 22 GVGKGTLIKKVLS 34 (204)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=49.42 E-value=4.2 Score=37.26 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 10 GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 10 GAGKRTLVEKLSG 22 (214)
T ss_dssp EEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=49.39 E-value=5.6 Score=35.57 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 16 GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 16 GSGKGTQCANIVR 28 (194)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 366
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=49.22 E-value=11 Score=35.47 Aligned_cols=34 Identities=24% Similarity=0.081 Sum_probs=23.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 36 (711)
|+||||+|..++. ..+..=..++-|+.....+..
T Consensus 10 GvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 10 GVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp SHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCHH
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcChH
Confidence 8999999999987 343332467788866544433
No 367
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=49.17 E-value=6.4 Score=35.80 Aligned_cols=13 Identities=54% Similarity=0.705 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 12 GsGKST~~~~La~ 24 (206)
T 1jjv_A 12 GSGKTTIANLFTD 24 (206)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999975
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.14 E-value=6.3 Score=35.81 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 16 GsGKSTl~~~L~~ 28 (207)
T 2j41_A 16 GVGKGTVRKRIFE 28 (207)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 369
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.03 E-value=6.2 Score=37.21 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+++
T Consensus 37 GsGKSTl~k~La~ 49 (246)
T 2bbw_A 37 GSGKGTVCQRIAQ 49 (246)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999984
No 370
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=48.88 E-value=13 Score=35.52 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=21.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..+..=..++.|+....
T Consensus 11 GvGKTT~a~nLA~--~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 11 GIGKSTTTQNLTS--GLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp TSSHHHHHHHHHH--HHHTTTCCEEEEEECTT
T ss_pred CCcHHHHHHHHHH--HHHHCCCcEEEEcCCCC
Confidence 8999999999887 44433236778876543
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.51 E-value=5.9 Score=36.81 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 17 GsGKsT~a~~La~ 29 (227)
T 1zd8_A 17 GSGKGTVSSRITT 29 (227)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 372
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=48.35 E-value=44 Score=34.23 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|++++.
T Consensus 268 GSGKSTla~~L~~ 280 (416)
T 3zvl_A 268 GAGKSTFIQEHLV 280 (416)
T ss_dssp TSSHHHHHHHHTG
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=48.31 E-value=11 Score=35.21 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 36 GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 36 GSGKTTVINEVYH 48 (229)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 374
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=48.23 E-value=6.6 Score=35.91 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 18 GsGKsTl~~~L~~ 30 (208)
T 3tau_A 18 GVGKGTVREAVFK 30 (208)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.16 E-value=6 Score=36.32 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 10 GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 10 GAGKGTQAEQIIE 22 (216)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999976
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.16 E-value=6 Score=35.84 Aligned_cols=13 Identities=31% Similarity=0.174 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 14 GsGKsT~~~~L~~ 26 (204)
T 2v54_A 14 KSGKTTQCMNIME 26 (204)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.14 E-value=6 Score=36.50 Aligned_cols=13 Identities=38% Similarity=0.325 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 14 GsGKsT~a~~La~ 26 (220)
T 1aky_A 14 GAGKGTQAPNLQE 26 (220)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.09 E-value=6.1 Score=35.86 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 25 GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 25 GAGKGTQCEKLVK 37 (203)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.95 E-value=6.8 Score=35.26 Aligned_cols=14 Identities=50% Similarity=0.619 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+||||+++.++..
T Consensus 11 G~GKTTll~~l~g~ 24 (189)
T 2i3b_A 11 GVGKTTLIHKASEV 24 (189)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhh
Confidence 89999999998873
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=47.92 E-value=43 Score=36.16 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|.|||||++.+..
T Consensus 379 GsGKSTll~~l~g 391 (582)
T 3b5x_A 379 GSGKSTIANLFTR 391 (582)
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999886
No 381
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=47.75 E-value=12 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred CccHHHHHHHHhcChhhhcc----------CCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH----------FEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~----------F~~~~wv~~~~~~ 33 (711)
|+|||||+..++. .+... -..++|++.....
T Consensus 40 GsGKTtl~~~l~~--~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 40 GAGKSMLALQLAA--QIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSSHHHHHHHHHH--HHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCCHHHHHHHHHH--HHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 8999999999886 23221 1246677766543
No 382
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=47.74 E-value=9.2 Score=35.85 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+|||++|.+++.+ .....-..++|++....
T Consensus 40 G~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 40 GTGKTTFAAQFIYK-GAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TSSHHHHHHHHHHH-HHHHHCCCEEEEESSSC
T ss_pred CCCHHHHHHHHHHH-HHHhcCCCceeecccCC
Confidence 89999999998763 12233346777776543
No 383
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=47.69 E-value=9.5 Score=36.37 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC 28 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~ 28 (711)
|+||||+++.+.. .+...+.+.+++.
T Consensus 35 GsGKSTll~~l~g--~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 35 GSGKSTTIASMID--YINQTKSYHIITI 60 (261)
T ss_dssp TCSHHHHHHHHHH--HHHHHCCCEEEEE
T ss_pred CccHHHHHHHHHH--hCCCCCCCEEEEc
Confidence 8999999999987 4444445555443
No 384
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=47.56 E-value=7.1 Score=35.58 Aligned_cols=13 Identities=46% Similarity=0.416 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 31 GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 31 NSGKTTLAKNLQK 43 (207)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999887
No 385
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.45 E-value=6.9 Score=35.72 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 30 GsGKSTLl~~l~g 42 (207)
T 1znw_A 30 AVGKSTVVRCLRE 42 (207)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999886
No 386
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=47.29 E-value=6.9 Score=36.20 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 15 GsGKSTl~~~L~~ 27 (227)
T 1cke_A 15 GAGKGTLCKAMAE 27 (227)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=47.13 E-value=6.5 Score=34.82 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 15 GsGKST~~~~L~~ 27 (179)
T 2pez_A 15 GAGKTTVSMALEE 27 (179)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=47.11 E-value=8.9 Score=35.57 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=16.9
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+|||||++.++. .-....+.+++
T Consensus 40 GsGKSTLl~~l~G---l~~p~~G~i~~ 63 (224)
T 2pcj_A 40 GSGKSTLLYILGL---LDAPTEGKVFL 63 (224)
T ss_dssp TSCHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CCCHHHHHHHHhc---CCCCCceEEEE
Confidence 8999999999987 22233455555
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=46.96 E-value=6.4 Score=37.56 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 14 GSGKSTla~~La~ 26 (260)
T 3a4m_A 14 GVGKSTFSKNLAK 26 (260)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.78 E-value=6.5 Score=36.10 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 10 GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 10 GAGKGTQGERIVE 22 (216)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999876
No 391
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.78 E-value=11 Score=35.00 Aligned_cols=29 Identities=24% Similarity=0.082 Sum_probs=22.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|..++. ..+..=..++.|+...
T Consensus 13 GvGKTt~a~~LA~--~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 13 GTGKTTVTANLSV--ALGDRGRKVLAVDGDL 41 (237)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECCT
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEeCCC
Confidence 8999999999998 4544434678888664
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=46.75 E-value=9.1 Score=35.84 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+|||||++.++. .-....+.+++
T Consensus 41 GsGKSTLl~~l~G---l~~p~~G~I~~ 64 (235)
T 3tif_A 41 GSGKSTMLNIIGC---LDKPTEGEVYI 64 (235)
T ss_dssp TSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CCcHHHHHHHHhc---CCCCCceEEEE
Confidence 8999999999986 23333456665
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=46.67 E-value=7.1 Score=36.78 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 35 GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 35 ASGKSTVCEKIME 47 (245)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 394
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.54 E-value=17 Score=44.32 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=49.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHHcCC-ceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEFRIARSIIEALTGSAP-----DVAEFQSLMQHIQEFVEG-EKFLL 74 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~~-~r~Ll 74 (711)
|+||||||.++.. +....=...+|++..+..++.- ++.++.+.. +.+..+++...+...++. .--++
T Consensus 1441 ~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~v 1513 (1706)
T 3cmw_A 1441 SSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1513 (1706)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEE
Confidence 7899999999997 3333334678999998888774 677665422 123336666667777764 45588
Q ss_pred EEeCC
Q 039822 75 VLDDV 79 (711)
Q Consensus 75 vlDdv 79 (711)
|+|-|
T Consensus 1514 vvDsv 1518 (1706)
T 3cmw_A 1514 VVDSV 1518 (1706)
T ss_dssp EESCS
T ss_pred EEccH
Confidence 99998
No 395
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=46.43 E-value=14 Score=36.74 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=22.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+||||+|..++. ..+..=..++-|+.....+
T Consensus 26 GvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 26 GVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 8999999998887 4444334677887764443
No 396
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=46.42 E-value=11 Score=36.00 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=17.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+|||||++.++. .-....+.+++
T Consensus 47 GsGKSTLl~~l~G---l~~p~~G~I~~ 70 (266)
T 4g1u_C 47 GAGKSTLLRLLTG---YLSPSHGECHL 70 (266)
T ss_dssp TSCHHHHHHHHTS---SSCCSSCEEEE
T ss_pred CCcHHHHHHHHhc---CCCCCCcEEEE
Confidence 8999999999997 22333566665
No 397
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=46.32 E-value=7.4 Score=35.25 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 14 GaGKSTLl~~L~~ 26 (198)
T 1lvg_A 14 GAGKSTLLKKLFQ 26 (198)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.92 E-value=6.8 Score=36.18 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 15 GsGKsT~~~~La~ 27 (222)
T 1zak_A 15 ASGKGTQCELIKT 27 (222)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 399
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=45.58 E-value=7.7 Score=35.20 Aligned_cols=13 Identities=46% Similarity=0.388 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 32 GsGKstl~~~l~~ 44 (201)
T 1rz3_A 32 RSGKTTLANQLSQ 44 (201)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 400
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=45.47 E-value=7.1 Score=35.30 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 18 GsGKST~~~~La~ 30 (203)
T 1uf9_A 18 GSGKSTVAALLRS 30 (203)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=45.32 E-value=7.1 Score=35.83 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 10 GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 10 VAGKGTQAQFIME 22 (214)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 402
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=45.31 E-value=50 Score=34.57 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+||||+++.++. .... -.+.+++.....+.
T Consensus 303 GSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 303 GVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred cccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 8999999999997 3332 24556665444444
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.99 E-value=9.9 Score=36.57 Aligned_cols=13 Identities=46% Similarity=0.554 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 44 GsGKSTLl~~l~G 56 (275)
T 3gfo_A 44 GVGKSTLFQNFNG 56 (275)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc
Confidence 8999999999986
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=44.99 E-value=9.9 Score=36.27 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 42 GsGKSTLlk~l~G 54 (262)
T 1b0u_A 42 GSGKSTFLRCINF 54 (262)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 405
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=44.73 E-value=8.1 Score=35.67 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 33 GsGKSTLl~~L~g 45 (218)
T 1z6g_A 33 GVGKGTLIKKLLN 45 (218)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 406
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=44.64 E-value=10 Score=35.62 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 34 GsGKSTLl~~l~G 46 (240)
T 2onk_A 34 GAGKSVFLELIAG 46 (240)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999987
No 407
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=44.53 E-value=19 Score=33.03 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 15 g~GKst~~~~l~~ 27 (216)
T 3tmk_A 15 RTGKTTQCNILYK 27 (216)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=44.45 E-value=7.4 Score=36.31 Aligned_cols=13 Identities=38% Similarity=0.332 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 26 GsGKsT~a~~La~ 38 (233)
T 1ak2_A 26 GAGKGTQAPKLAK 38 (233)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=44.41 E-value=8 Score=36.31 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=18.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+|||||++.++..-.. ..-..++|+...
T Consensus 40 GsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 40 GTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 89999999998842111 222456666543
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.37 E-value=7.5 Score=35.58 Aligned_cols=13 Identities=38% Similarity=0.307 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 35 GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 35 ASGKSTLAVELEH 47 (211)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 411
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=44.29 E-value=11 Score=34.76 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 45 GsGKSTLlk~l~G 57 (214)
T 1sgw_A 45 GIGKTTLLKTIST 57 (214)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 412
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=44.16 E-value=8.1 Score=36.66 Aligned_cols=13 Identities=46% Similarity=0.371 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||++..++.
T Consensus 24 GvGKTTl~~~La~ 36 (262)
T 1yrb_A 24 GSGKTTLTGEFGR 36 (262)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 413
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=44.10 E-value=16 Score=35.36 Aligned_cols=30 Identities=27% Similarity=0.224 Sum_probs=21.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..+..=..++-|+....
T Consensus 12 GvGKTT~a~nLA~--~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 12 GIGKSTTTQNLVA--ALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEEECSS
T ss_pred cCcHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 8999999999987 44433235777776543
No 414
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=44.06 E-value=7.8 Score=34.98 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 22 GSGKSTva~~L~~ 34 (192)
T 2grj_A 22 GTGKSTVCEILKN 34 (192)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=44.00 E-value=16 Score=32.29 Aligned_cols=13 Identities=46% Similarity=0.519 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||++.++..
T Consensus 16 GsGKTTl~~~l~~ 28 (174)
T 1np6_A 16 GTGKTTLLKKLIP 28 (174)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 416
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=43.99 E-value=8.2 Score=37.96 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=18.7
Q ss_pred CccHHHHHHHHhcChhhhccC--CceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHF--EKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~ 31 (711)
|+|||||++.++. ...... ..+.+|....
T Consensus 100 GsGKSTL~~~L~g--ll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 100 AVGKSTTARVLQA--LLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp TSCHHHHHHHHHH--HHHTSTTCCCEEEEEGGG
T ss_pred CchHHHHHHHHHh--hccccCCCCeEEEEecCc
Confidence 8999999999987 332211 2356666443
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=43.96 E-value=8.9 Score=33.27 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||..++...
T Consensus 13 gvGKStL~~~l~~~ 26 (165)
T 2wji_A 13 NVGKSTIFNALTGE 26 (165)
T ss_dssp TSSHHHHHHHHHCC
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999999874
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=43.93 E-value=7.7 Score=35.93 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 10 GsGKsT~a~~La~ 22 (223)
T 2xb4_A 10 GSGKGTQGNLVKD 22 (223)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 419
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=43.72 E-value=17 Score=35.14 Aligned_cols=34 Identities=18% Similarity=0.017 Sum_probs=23.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-CCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-PFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~ 36 (711)
|+||||+|..++. ..+..=..++-|+... ..+..
T Consensus 15 GvGKTT~a~nLA~--~La~~G~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 15 GAGKSTIAVHLVT--ALLYGGAKVAVIDLDLRQRTSA 49 (286)
T ss_dssp CTTHHHHHHHHHH--HHHHTTCCEEEEECCTTTCHHH
T ss_pred CCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCCCHH
Confidence 8999999999987 4444323577777766 44443
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=43.63 E-value=7.8 Score=35.67 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 15 GsGKsT~a~~La~ 27 (217)
T 3be4_A 15 GSGKGTQCEFIKK 27 (217)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 421
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=43.62 E-value=11 Score=35.58 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=16.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+|||||++.++. ..... +.+++
T Consensus 36 GsGKSTLlk~l~G--l~~p~--G~i~~ 58 (249)
T 2qi9_C 36 GAGKSTLLARMAG--MTSGK--GSIQF 58 (249)
T ss_dssp TSSHHHHHHHHTT--SSCCE--EEEEE
T ss_pred CCcHHHHHHHHhC--CCCCC--eEEEE
Confidence 8999999999997 33333 55555
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=43.41 E-value=9.1 Score=33.93 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=12.7
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||++.++..
T Consensus 12 gvGKStLl~~l~~~ 25 (184)
T 2zej_A 12 GSGKTTLLQQLMKT 25 (184)
T ss_dssp TSSHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999999873
No 423
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.34 E-value=17 Score=36.71 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+..=..++.|+.....
T Consensus 154 GvGKTT~a~nLA~--~La~~g~rVlliD~D~~~ 184 (373)
T 3fkq_A 154 GVGTSTVAAACAI--AHANMGKKVFYLNIEQCG 184 (373)
T ss_dssp TSSHHHHHHHHHH--HHHHHTCCEEEEECCTTC
T ss_pred CChHHHHHHHHHH--HHHhCCCCEEEEECCCCC
Confidence 8999999999887 444443468888877433
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=43.21 E-value=7.9 Score=36.31 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+++
T Consensus 12 g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 12 AVGKSTFVKLLTK 24 (241)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=43.09 E-value=11 Score=35.94 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 60 GsGKSTLlk~l~G 72 (263)
T 2olj_A 60 GSGKSTFLRCLNL 72 (263)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHc
Confidence 8999999999987
No 426
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=43.06 E-value=6.7 Score=38.06 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 43 GsGKSTla~~L~~ 55 (287)
T 1gvn_B 43 GSGKTSLRSAIFE 55 (287)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=43.05 E-value=12 Score=35.25 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=27.1
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccCchhhHhhhccCCCCCEEEEEecchhhhh
Q 039822 62 HIQEFVEGEKFLLVLDDVWNE-DYCKWEPFYYCLKNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~l~~~~~~s~iivTtR~~~~~~ 114 (711)
.+.+.+-.++=++++|..... +...-..+...+.....|.-||++|-+.+.+.
T Consensus 149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 202 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV 202 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH
Confidence 344455555668888886332 11222223332221113667888887766554
No 428
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.88 E-value=11 Score=35.50 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 45 GsGKSTLl~~l~G 57 (247)
T 2ff7_A 45 GSGKSTLTKLIQR 57 (247)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.88 E-value=11 Score=35.31 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 42 GsGKSTLl~~l~G 54 (240)
T 1ji0_A 42 GAGKTTTLSAIAG 54 (240)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999987
No 430
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=42.72 E-value=15 Score=34.99 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=23.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDE 35 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 35 (711)
|+||||+|..++. ..+ .=..++-|+.....+.
T Consensus 38 GvGKTT~a~~LA~--~la-~g~~VlliD~D~~~~~ 69 (267)
T 3k9g_A 38 GVGKSTSAIILAT--LLS-KNNKVLLIDMDTQASI 69 (267)
T ss_dssp SSCHHHHHHHHHH--HHT-TTSCEEEEEECTTCHH
T ss_pred CchHHHHHHHHHH--HHH-CCCCEEEEECCCCCCH
Confidence 8999999999988 444 3246788887755433
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=42.61 E-value=9.2 Score=34.25 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||++.+...
T Consensus 39 g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 39 GVGKSNLLSRFTRN 52 (191)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999999874
No 432
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.57 E-value=14 Score=35.09 Aligned_cols=31 Identities=19% Similarity=0.030 Sum_probs=21.4
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+..=..++-|+.....
T Consensus 29 GvGKTT~a~nLA~--~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 29 GVGKSTVTALLAV--HYARQGKKVGILDADFLG 59 (262)
T ss_dssp CTTHHHHHHHHHH--HHHHTTCCEEEEECCSSC
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCC
Confidence 8999999999887 444332357777765443
No 433
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.48 E-value=11 Score=35.66 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 51 GsGKSTLlk~l~G 63 (256)
T 1vpl_A 51 GAGKTTTLRIIST 63 (256)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 434
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=42.25 E-value=9.4 Score=37.80 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 17 GaGKTT~~~~La~ 29 (334)
T 1p6x_A 17 GIGKSTTGRVMAS 29 (334)
T ss_dssp TSSHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999988
No 435
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=42.20 E-value=12 Score=35.65 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 43 GsGKSTLlk~l~G 55 (257)
T 1g6h_A 43 GSGKSTLINVITG 55 (257)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999987
No 436
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=42.06 E-value=9.4 Score=35.26 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 26 GsGKSTLlk~L~g 38 (219)
T 1s96_A 26 GAGKSSLIQALLK 38 (219)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 437
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=41.81 E-value=9.7 Score=34.44 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 29 GaGKsTL~~~L~~ 41 (197)
T 3ney_A 29 GVGRSHIKNALLS 41 (197)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 438
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.72 E-value=15 Score=34.84 Aligned_cols=29 Identities=21% Similarity=0.023 Sum_probs=21.6
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|..++. .....=..++.|+...
T Consensus 13 GvGKTt~a~~LA~--~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 13 GTGKTTITANLGV--ALAQLGHDVTIVDADI 41 (263)
T ss_dssp CSCHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred CCCHHHHHHHHHH--HHHhCCCcEEEEECCC
Confidence 8999999999988 4444334677887664
No 439
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=41.67 E-value=8.7 Score=34.82 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.++.
T Consensus 12 GsGKst~~~~la~ 24 (208)
T 3ake_A 12 ASGKSSVARRVAA 24 (208)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 440
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=41.60 E-value=15 Score=34.20 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=21.3
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..... =..++.|+....
T Consensus 15 GvGKTt~a~~LA~--~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 15 GDGGSCIAANFAF--ALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp TSSHHHHHHHHHH--HHTTSTTCCEEEEECCTT
T ss_pred CcchHHHHHHHHH--HHHhCcCCCEEEEECCCC
Confidence 8999999999887 44443 235777776533
No 441
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=41.52 E-value=9.9 Score=37.61 Aligned_cols=13 Identities=54% Similarity=0.700 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 14 GsGKTT~~~~La~ 26 (331)
T 1e2k_A 14 GMGKTTTTQLLVA 26 (331)
T ss_dssp TSSHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 442
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.44 E-value=12 Score=35.75 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 43 GsGKSTLl~~i~G 55 (266)
T 2yz2_A 43 GSGKSTLLQIVAG 55 (266)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999999987
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.35 E-value=12 Score=35.85 Aligned_cols=13 Identities=54% Similarity=0.705 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 55 GsGKSTLlk~l~G 67 (271)
T 2ixe_A 55 GSGKSTVAALLQN 67 (271)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 444
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.25 E-value=8.9 Score=35.22 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=11.7
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 14 GSGKST~~~~L~~ 26 (218)
T 1vht_A 14 GSGKSTVANAFAD 26 (218)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 445
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=41.21 E-value=18 Score=35.24 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=21.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+..=..++-|+.....
T Consensus 51 GvGKTT~a~nLA~--~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 51 GIGKSTTSSNLSA--AFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEEESSSC
T ss_pred CccHHHHHHHHHH--HHHHCCCeEEEEeCCCCC
Confidence 8999999999887 444332367778766433
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=41.12 E-value=13 Score=34.68 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=28.4
Q ss_pred HHHHHHcCCceEEEEEeCCCCCCc-cCchhhHhhh-ccCCCCCEEEEEecchhhhh
Q 039822 61 QHIQEFVEGEKFLLVLDDVWNEDY-CKWEPFYYCL-KNCLYGSKILITTRKETVAC 114 (711)
Q Consensus 61 ~~~~~~l~~~r~LlvlDdv~~~~~-~~~~~~~~~l-~~~~~~s~iivTtR~~~~~~ 114 (711)
-.+.+.+-.++=++++|.....-. ..-..+...+ .....+..||++|-+.+.+.
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 345555556667889998733211 1222233322 22223567888887766554
No 447
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=41.12 E-value=39 Score=35.95 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=26.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC-CHHHHHHHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF-DEFRIARSI 42 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 42 (711)
|+|||+|+.++++. .+-+.++++-+++.. ...++++.+
T Consensus 242 g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 242 GAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 89999999998872 233567788777654 355555543
No 448
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=41.11 E-value=18 Score=36.20 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD 31 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 31 (711)
|+||||+|..++. ..+..=..++-|+..-
T Consensus 36 GvGKTTvA~~LA~--~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 36 GVGKTTMSAATGV--YLAEKGLKVVIVSTDP 64 (349)
T ss_dssp STTHHHHHHHHHH--HHHHSSCCEEEEECCT
T ss_pred CccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 8999999988887 3433323566666443
No 449
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=41.10 E-value=23 Score=38.12 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEe
Q 039822 72 FLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITT 107 (711)
Q Consensus 72 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTt 107 (711)
-+||+|.+..-+...+..+...++ .+.++|+.-
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred CEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 489999985544444555544444 466777654
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=40.90 E-value=65 Score=33.16 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=19.2
Q ss_pred CccHHHHHHHHhcChhhhcc-CCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNH-FEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~-F~~~~wv~~~ 30 (711)
|+||||++.+++. ..+.. =..+..|+..
T Consensus 110 GvGKTT~a~~LA~--~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 110 GAGKTTSVGKLGK--FLREKHKKKVLVVSAD 138 (433)
T ss_dssp TSSHHHHHHHHHH--HHHHTSCCCEEEEECC
T ss_pred CCCHHHHHHHHHH--HHHHhcCCeEEEEecC
Confidence 8999999999987 44433 2345666654
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=40.85 E-value=10 Score=34.17 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||++.+...
T Consensus 15 g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 15 GVGKSNLLSRFTRN 28 (199)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999999874
No 452
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=40.80 E-value=21 Score=31.71 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=19.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+|||++|.+++.. + ..++++.....++
T Consensus 9 ~SGKS~~A~~la~~----~--~~~~yiaT~~~~d 36 (180)
T 1c9k_A 9 RSGKSRHAEALIGD----A--PQVLYIATSQILD 36 (180)
T ss_dssp TSSHHHHHHHHHCS----C--SSEEEEECCCC--
T ss_pred CCcHHHHHHHHHhc----C--CCeEEEecCCCCC
Confidence 79999999999972 1 2467776655443
No 453
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=40.78 E-value=20 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=23.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCC-CCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSD-PFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~ 36 (711)
|+||||+|..++. ..+..=..++.|+... ..+..
T Consensus 13 GvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 13 GVGKTTSSAAIAT--GLAQKGKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECCCSSCCHH
T ss_pred CCcHHHHHHHHHH--HHHhCCCcEEEEECCCCCCChh
Confidence 8999999999987 4443323577787664 34433
No 454
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=40.48 E-value=9.3 Score=35.95 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+.+
T Consensus 39 GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 39 GSGKGTQSLNLKK 51 (243)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 455
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.38 E-value=10 Score=35.90 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 37 GsGKSTl~k~La~ 49 (252)
T 4e22_A 37 GAGKGTLCKALAE 49 (252)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999985
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=40.31 E-value=8.2 Score=35.95 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 30 GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 30 GSGKTTYLNHFEK 42 (230)
T ss_dssp TSCHHHHHHTTGG
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999987
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=40.25 E-value=9.4 Score=36.12 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 32 GSGKST~a~~L~~ 44 (252)
T 1uj2_A 32 ASGKSSVCAKIVQ 44 (252)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999887
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=39.97 E-value=7 Score=37.30 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+++
T Consensus 34 GsGKST~~~~L~~ 46 (263)
T 1p5z_B 34 AAGKSTFVNILKQ 46 (263)
T ss_dssp TSSHHHHHTTTGG
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999887
No 459
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=39.96 E-value=20 Score=35.76 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=21.7
Q ss_pred CccHHHHHHHHhcChhhh--ccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVK--NHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~--~~F~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+ ..=..++-|+.....
T Consensus 28 GvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 28 GVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp TSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSC
T ss_pred CCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCC
Confidence 8999999999887 444 332357777776433
No 460
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=39.87 E-value=9.6 Score=35.12 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||+.++..
T Consensus 48 gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 48 GSGKTLLIEKLID 60 (226)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=39.82 E-value=11 Score=32.21 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 11 ~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 11 NVGKSSLFNRLLKK 24 (161)
T ss_dssp TSSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999999864
No 462
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=39.73 E-value=20 Score=34.68 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=22.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPF 33 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 33 (711)
|+||||+|..++. ..+..=..++-|+.....
T Consensus 47 GvGKTT~a~nLA~--~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 47 GVGKSKLSTMFAY--LTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SSSHHHHHHHHHH--HHHHTTCCEEEEEECTTC
T ss_pred CchHHHHHHHHHH--HHHhCCCeEEEEeCCCCC
Confidence 8999999999987 444332357777766544
No 463
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=39.60 E-value=13 Score=35.72 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=16.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWV 27 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv 27 (711)
|+|||||++.++.- -....+.+++
T Consensus 57 GsGKSTLlk~l~Gl---~~p~~G~I~~ 80 (279)
T 2ihy_A 57 GAGKTTLLNILNAY---EPATSGTVNL 80 (279)
T ss_dssp TSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCcHHHHHHHHhCC---CCCCCeEEEE
Confidence 89999999999872 2223455555
No 464
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=39.47 E-value=14 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=21.7
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..+..=..++.|+....
T Consensus 17 GvGKTt~a~~LA~--~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 17 GVGKTTTAINLAA--YLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CHHHHHHHHHHHH--HHHHTTCCEEEEECCTT
T ss_pred CchHHHHHHHHHH--HHHHCCCCEEEEECCCC
Confidence 8999999999987 44443236777776643
No 465
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.20 E-value=15 Score=35.82 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=19.8
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFD 34 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 34 (711)
|+||||+++.++. ..... .+.+++.....+.
T Consensus 110 GsGKTTll~~Lag--~l~~~-~g~V~l~g~d~~r 140 (302)
T 3b9q_A 110 GGGKTTSLGKLAH--RLKNE-GTKVLMAAGDTFR 140 (302)
T ss_dssp TSCHHHHHHHHHH--HHHHT-TCCEEEECCCCSC
T ss_pred CCCHHHHHHHHHH--HHHHc-CCeEEEEeecccc
Confidence 8999999999997 33332 4455554433333
No 466
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=39.12 E-value=11 Score=35.27 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=29.2
Q ss_pred HHHHHcCCceEEEEEeCCCCCCc-cCchhhHhhhc---cCCCCCEEEEEecchhhhh
Q 039822 62 HIQEFVEGEKFLLVLDDVWNEDY-CKWEPFYYCLK---NCLYGSKILITTRKETVAC 114 (711)
Q Consensus 62 ~~~~~l~~~r~LlvlDdv~~~~~-~~~~~~~~~l~---~~~~~s~iivTtR~~~~~~ 114 (711)
.+.+.+-.++=++++|.....-. ..-..+...+. ....|.-||++|-+.+.+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 45555555667889999743211 12223333342 2224667888888766554
No 467
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.11 E-value=9.6 Score=38.63 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 82 GtGKT~la~~la~ 94 (376)
T 1um8_A 82 GSGKTLMAQTLAK 94 (376)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 468
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=39.08 E-value=7.5 Score=36.87 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 42 GsGKSTla~~L~~ 54 (253)
T 2p5t_B 42 GAGKTTIHRIKQK 54 (253)
T ss_dssp GGTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 469
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=39.04 E-value=12 Score=33.19 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.7
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+..+...
T Consensus 17 gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 17 NVGKSTIFNALTGE 30 (188)
T ss_dssp TSSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999999874
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=38.95 E-value=17 Score=35.78 Aligned_cols=28 Identities=25% Similarity=0.077 Sum_probs=19.0
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVS 30 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 30 (711)
|+||||++..++. ..+..=..++++...
T Consensus 115 G~GKTT~~~~LA~--~l~~~g~kVllid~D 142 (320)
T 1zu4_A 115 GTGKTTSLAKMAN--YYAELGYKVLIAAAD 142 (320)
T ss_dssp TSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCHHHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 8999999999987 444332345555543
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=38.78 E-value=12 Score=32.10 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 13 ~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 13 GVGKSALTIQLIQN 26 (166)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhC
Confidence 79999999999764
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.62 E-value=7.3 Score=34.37 Aligned_cols=13 Identities=38% Similarity=0.317 Sum_probs=12.0
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.+..
T Consensus 12 GsGKSTL~~~L~~ 24 (171)
T 2f1r_A 12 DSGKTTLITRMMP 24 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7899999999987
No 473
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=38.51 E-value=88 Score=32.85 Aligned_cols=13 Identities=38% Similarity=0.312 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||++.+++.
T Consensus 111 GvGKTTl~~kLA~ 123 (504)
T 2j37_W 111 GSGKTTTCSKLAY 123 (504)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 474
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=38.40 E-value=8.8 Score=35.12 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=21.7
Q ss_pred cCCceEEEEEeCCCCCCccCchhhHhhhccCCCCCEEEEEecchhh
Q 039822 67 VEGEKFLLVLDDVWNEDYCKWEPFYYCLKNCLYGSKILITTRKETV 112 (711)
Q Consensus 67 l~~~r~LlvlDdv~~~~~~~~~~~~~~l~~~~~~s~iivTtR~~~~ 112 (711)
+-.++-+++||..... .-..+...+.....|..|| +|-+...
T Consensus 119 L~~~p~lllLDEPts~---~~~~l~~~l~~l~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 119 RTLNDAFVILDEAQNT---TPAQMKMFLTRLGFGSKMV-VTGDITQ 160 (208)
T ss_dssp CCBCSEEEEECSGGGC---CHHHHHHHHTTBCTTCEEE-EEEC---
T ss_pred HhcCCCEEEEeCCccc---cHHHHHHHHHHhcCCCEEE-EECCHHH
Confidence 3445678999997444 2333333333323466677 7755443
No 475
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=37.96 E-value=17 Score=35.48 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEE
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVC 28 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~ 28 (711)
|+||||+++.++. ..... .+.+++.
T Consensus 112 GsGKTTll~~Lag--ll~~~-~g~V~l~ 136 (304)
T 1rj9_A 112 GVGKTTTIAKLGR--YYQNL-GKKVMFC 136 (304)
T ss_dssp TSSHHHHHHHHHH--HHHTT-TCCEEEE
T ss_pred CCcHHHHHHHHHH--HHHhc-CCEEEEE
Confidence 8999999999997 33332 3444444
No 476
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=37.73 E-value=10 Score=38.14 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||++|+.+++
T Consensus 61 GtGKT~la~~ia~ 73 (363)
T 3hws_A 61 GSGKTLLAETLAR 73 (363)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 477
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=37.67 E-value=12 Score=35.38 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 39 GsGKSTLlk~l~G 51 (250)
T 2d2e_A 39 GAGKSTLGKILAG 51 (250)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999987
No 478
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.54 E-value=12 Score=36.89 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.9
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 102 GSGKSTl~~~L~~ 114 (321)
T 3tqc_A 102 AVGKSTTSRVLKA 114 (321)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999876
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=37.53 E-value=11 Score=37.30 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||||..++.
T Consensus 50 gsGKTtLa~~LA~ 62 (339)
T 3a8t_A 50 GTGKSRLSIDLAA 62 (339)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999997
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=37.33 E-value=11 Score=36.70 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 12 GsGKST~a~~L~~ 24 (301)
T 1ltq_A 12 GSGKSTWAREFIA 24 (301)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=37.33 E-value=23 Score=34.99 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=21.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCC
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDP 32 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 32 (711)
|+||||+|..++. ..+..=..+.-|+....
T Consensus 29 GvGKTTva~~LA~--~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 29 GVGKTTTSCSLAI--QMSKVRSSVLLISTDPA 58 (329)
T ss_dssp SSSHHHHHHHHHH--HHHTSSSCEEEEECCTT
T ss_pred CCcHHHHHHHHHH--HHHHCCCeEEEEECCCC
Confidence 8999999988887 44443235677776643
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=37.28 E-value=13 Score=32.27 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=12.6
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 14 ~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 14 GVGKTSLASLFAGK 27 (175)
T ss_dssp TSSHHHHHHHHHCC
T ss_pred CccHHHHHHHHhcC
Confidence 79999999999874
No 483
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=37.27 E-value=14 Score=32.21 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 18 ~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 18 DHGKTTLLDAIRHS 31 (178)
T ss_dssp TTTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999999874
No 484
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=37.23 E-value=13 Score=37.50 Aligned_cols=13 Identities=54% Similarity=0.700 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+.+
T Consensus 59 GsGKTT~~~~Lae 71 (376)
T 1of1_A 59 GMGKTTTTQLLVA 71 (376)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 485
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=36.91 E-value=12 Score=35.68 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=12.3
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 56 GsGKSTLlk~l~G 68 (267)
T 2zu0_C 56 GSGKSTLSATLAG 68 (267)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999987
No 486
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=36.62 E-value=12 Score=36.56 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.+..
T Consensus 90 GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 90 AVGKSTTARVLQA 102 (308)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 487
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=36.48 E-value=12 Score=34.35 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=12.1
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||+.++..
T Consensus 40 g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 40 GSGKTLLIERTIE 52 (221)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 488
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=36.45 E-value=8.5 Score=35.79 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=7.6
Q ss_pred CccHHHHHHHHh-c
Q 039822 1 GIGKTTLAQLAY-N 13 (711)
Q Consensus 1 GiGKTtla~~~~-~ 13 (711)
|+||||+++.+. .
T Consensus 37 GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 37 GCGKTTVANKLLEK 50 (231)
T ss_dssp C----CHHHHHHC-
T ss_pred CCCHHHHHHHHHhc
Confidence 899999999998 5
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=36.35 E-value=13 Score=31.85 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 12 ~~GKSsli~~l~~~ 25 (166)
T 3q72_A 12 GVGKSALARIFGGV 25 (166)
T ss_dssp TSSHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCc
Confidence 79999999999864
No 490
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=36.12 E-value=22 Score=35.72 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=24.1
Q ss_pred CccHHHHHHHHhcChhhhccCCceEEEEeCCCCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVKNHFEKRIWVCVSDPFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 36 (711)
|+||||+|..++. ..+..=..|+-|+.....+..
T Consensus 12 GvGKTT~a~nLA~--~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 12 GVGKTTLSTNVAH--YFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp CHHHHHHHHHHHH--HHHHTTCCEEEEECCTTCTTH
T ss_pred CCcHHHHHHHHHH--HHHhCCCcEEEEEcCCCCChh
Confidence 8999999999887 444322368888877555443
No 491
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=36.06 E-value=11 Score=35.51 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+++.++.
T Consensus 58 GsGKSTl~~~La~ 70 (250)
T 3nwj_A 58 GSGKTTVGKIMAR 70 (250)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=36.02 E-value=14 Score=31.83 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 15 ~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 15 AVGKSSMIQRYCKG 28 (168)
T ss_dssp TSSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcC
Confidence 79999999999864
No 493
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=35.93 E-value=14 Score=31.85 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 13 ~~GKssli~~l~~~ 26 (172)
T 2erx_A 13 GVGKSSLVLRFVKG 26 (172)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC
Confidence 79999999999874
No 494
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=35.66 E-value=32 Score=34.39 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=23.6
Q ss_pred CccHHHHHHHHhcChhhh--ccCCceEEEEeCCCCCHH
Q 039822 1 GIGKTTLAQLAYNNDDVK--NHFEKRIWVCVSDPFDEF 36 (711)
Q Consensus 1 GiGKTtla~~~~~~~~~~--~~F~~~~wv~~~~~~~~~ 36 (711)
|+||||+|..++. ..+ ..=..++-|+..-..+..
T Consensus 28 GvGKTTvaanLA~--~lA~~~~G~rVLLvD~D~~~~l~ 63 (354)
T 2woj_A 28 GVGKTTSSCSIAI--QMALSQPNKQFLLISTDPAHNLS 63 (354)
T ss_dssp TSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCCHH
T ss_pred CCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCCHH
Confidence 8999999998887 455 332357788766545544
No 495
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=35.61 E-value=14 Score=35.25 Aligned_cols=13 Identities=54% Similarity=0.928 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||++.++.
T Consensus 56 GsGKSTLl~~l~G 68 (260)
T 2ghi_A 56 GSGKSTIAKLLYR 68 (260)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999987
No 496
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=35.55 E-value=14 Score=32.78 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.5
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+..+...
T Consensus 31 ~~GKSsli~~l~~~ 44 (190)
T 3con_A 31 GVGKSALTIQLIQN 44 (190)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcC
Confidence 79999999999864
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.29 E-value=13 Score=36.69 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=12.2
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|..++.
T Consensus 15 GsGKTtla~~La~ 27 (323)
T 3crm_A 15 AAGKTDLAMALAD 27 (323)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999987
No 498
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=35.21 E-value=14 Score=35.69 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=11.7
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+||||+|+.+..
T Consensus 85 GSGKSTva~~La~ 97 (281)
T 2f6r_A 85 GSGKSSVAQRLKN 97 (281)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999873
No 499
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.87 E-value=14 Score=32.53 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=11.6
Q ss_pred CccHHHHHHHHhc
Q 039822 1 GIGKTTLAQLAYN 13 (711)
Q Consensus 1 GiGKTtla~~~~~ 13 (711)
|+|||||+.+++.
T Consensus 36 GsGKStll~ai~~ 48 (182)
T 3kta_A 36 GSGKSNIGDAILF 48 (182)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=34.85 E-value=15 Score=31.55 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.4
Q ss_pred CccHHHHHHHHhcC
Q 039822 1 GIGKTTLAQLAYNN 14 (711)
Q Consensus 1 GiGKTtla~~~~~~ 14 (711)
|+|||||+.++...
T Consensus 14 ~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 14 GVGKSALTLQFMYD 27 (168)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhC
Confidence 79999999999864
Done!