BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039825
         (117 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
          Length = 520

 Score = 29.6 bits (65), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 16  IMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAY 63
           ++ERAD+   P     V  AL    IGLD +  F      SC+P   +
Sbjct: 307 LLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLY---SCFPFPVF 351


>pdb|1Y7U|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
           Cereus
 pdb|1Y7U|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
           Cereus
 pdb|1Y7U|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
           Cereus
          Length = 174

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 74  IALESNTEPVPVPR-----KAETQSHRIPLVALFPEPLKDTRDPRLPTM 117
           +AL     PVPVPR     + E +SHRI ++      ++     ++ T+
Sbjct: 123 VALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATL 171


>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
           Hydrolase Family Protein From Yersinia Pestis Co92
 pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
           Hydrolase Family Protein From Yersinia Pestis Co92
 pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
           Hydrolase Family Protein From Yersinia Pestis Co92
 pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
           Hydrolase Family Protein From Yersinia Pestis Co92
          Length = 221

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 81  EPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRL 114
           +PV +P+   +  H I L  L   PLK   + R+
Sbjct: 59  QPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRV 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,203,045
Number of Sequences: 62578
Number of extensions: 106853
Number of successful extensions: 285
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 4
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)