Query 039825
Match_columns 117
No_of_seqs 128 out of 1020
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.5E-17 3.2E-22 133.8 12.1 99 2-100 4-102 (412)
2 KOG1330 Sugar transporter/spin 99.7 4.3E-18 9.3E-23 141.7 6.8 100 1-100 28-127 (493)
3 PRK14995 methyl viologen resis 99.7 1.8E-16 3.9E-21 130.3 12.9 100 1-100 1-100 (495)
4 TIGR00891 2A0112 putative sial 99.7 7.5E-16 1.6E-20 119.6 12.4 98 3-100 9-106 (405)
5 PRK09556 uhpT sugar phosphate 99.7 3.1E-16 6.7E-21 127.6 10.3 98 2-99 25-127 (467)
6 PRK10406 alpha-ketoglutarate t 99.6 4.9E-15 1.1E-19 119.3 12.5 93 3-95 19-117 (432)
7 PRK12307 putative sialic acid 99.6 1.2E-14 2.5E-19 115.4 12.2 98 3-100 15-112 (426)
8 PRK03699 putative transporter; 99.6 1.4E-14 3E-19 115.1 12.2 97 3-99 4-100 (394)
9 PRK11551 putative 3-hydroxyphe 99.6 2E-14 4.3E-19 113.4 12.2 98 3-100 12-109 (406)
10 PRK03633 putative MFS family t 99.6 2.1E-14 4.6E-19 113.4 12.1 100 1-100 1-100 (381)
11 TIGR00890 2A0111 Oxalate/Forma 99.6 3.7E-15 8E-20 113.9 7.3 96 5-100 2-97 (377)
12 PRK03893 putative sialic acid 99.6 3E-14 6.4E-19 115.3 12.4 99 2-100 16-114 (496)
13 PRK15075 citrate-proton sympor 99.6 3.9E-14 8.4E-19 114.2 11.8 95 2-96 11-111 (434)
14 PRK03545 putative arabinose tr 99.6 4.4E-14 9.5E-19 111.7 11.4 99 2-100 5-103 (390)
15 TIGR01299 synapt_SV2 synaptic 99.6 4.4E-14 9.6E-19 123.3 12.4 98 3-100 164-261 (742)
16 PRK10642 proline/glycine betai 99.6 6.1E-14 1.3E-18 115.1 12.5 92 5-96 15-112 (490)
17 PRK09705 cynX putative cyanate 99.5 4.6E-14 9.9E-19 112.6 10.5 78 23-100 26-103 (393)
18 PRK11663 regulatory protein Uh 99.5 6.8E-14 1.5E-18 112.9 10.6 97 3-99 20-116 (434)
19 TIGR00711 efflux_EmrB drug res 99.5 2.1E-13 4.5E-18 109.5 11.8 95 6-100 2-96 (485)
20 PRK09952 shikimate transporter 99.5 3.3E-13 7.1E-18 109.3 12.6 92 3-95 19-118 (438)
21 PRK10504 putative transporter; 99.5 3.9E-13 8.4E-18 108.5 12.6 95 5-99 9-103 (471)
22 PRK10133 L-fucose transporter; 99.5 7.5E-13 1.6E-17 108.0 12.7 98 3-100 23-123 (438)
23 PLN00028 nitrate transmembrane 99.5 7.7E-13 1.7E-17 108.6 12.7 97 3-99 33-129 (476)
24 TIGR00895 2A0115 benzoate tran 99.5 8.6E-13 1.9E-17 101.8 12.2 98 2-99 13-110 (398)
25 PRK10091 MFS transport protein 99.5 4.1E-13 8.8E-18 106.3 10.6 95 6-100 3-97 (382)
26 TIGR00881 2A0104 phosphoglycer 99.5 2E-13 4.3E-18 104.4 8.0 88 13-100 2-89 (379)
27 PRK11652 emrD multidrug resist 99.5 6.8E-13 1.5E-17 104.7 11.2 99 2-100 4-102 (394)
28 COG2814 AraJ Arabinose efflux 99.5 7.5E-13 1.6E-17 108.7 11.6 99 2-100 9-107 (394)
29 TIGR00894 2A0114euk Na(+)-depe 99.5 1.4E-13 3E-18 111.3 6.9 96 2-97 15-134 (465)
30 TIGR00893 2A0114 d-galactonate 99.4 2.2E-13 4.8E-18 103.8 7.4 87 14-100 2-88 (399)
31 TIGR00710 efflux_Bcr_CflA drug 99.4 9.3E-13 2E-17 102.0 10.8 98 3-100 2-99 (385)
32 PRK10077 xylE D-xylose transpo 99.4 6.3E-13 1.4E-17 106.9 10.0 89 3-91 9-105 (479)
33 TIGR00886 2A0108 nitrite extru 99.4 9.2E-13 2E-17 101.8 10.4 93 8-100 3-97 (366)
34 TIGR00892 2A0113 monocarboxyla 99.4 1E-12 2.2E-17 107.2 11.1 96 3-98 16-111 (455)
35 PRK11273 glpT sn-glycerol-3-ph 99.4 7.5E-13 1.6E-17 107.3 10.1 89 3-92 26-114 (452)
36 PRK10213 nepI ribonucleoside t 99.4 1.9E-12 4.1E-17 103.6 12.1 97 4-100 18-114 (394)
37 PRK15402 multidrug efflux syst 99.4 1.5E-12 3.2E-17 103.3 11.3 96 5-100 12-107 (406)
38 PF07690 MFS_1: Major Facilita 99.4 2.1E-12 4.6E-17 98.3 10.8 89 11-99 1-90 (352)
39 PRK15403 multidrug efflux syst 99.4 2.9E-12 6.3E-17 103.3 11.3 92 9-100 19-110 (413)
40 PRK11043 putative transporter; 99.4 4.8E-12 1E-16 100.1 12.0 97 3-99 3-99 (401)
41 TIGR00887 2A0109 phosphate:H+ 99.4 5.5E-12 1.2E-16 103.7 12.3 92 2-93 12-108 (502)
42 PRK05122 major facilitator sup 99.4 3.2E-12 7E-17 100.8 10.3 87 5-91 14-101 (399)
43 PRK15034 nitrate/nitrite trans 99.4 8.2E-12 1.8E-16 104.2 12.2 96 5-100 33-134 (462)
44 TIGR00885 fucP L-fucose:H+ sym 99.4 1.2E-11 2.6E-16 100.2 11.8 92 8-99 5-99 (410)
45 PRK12382 putative transporter; 99.3 8.5E-12 1.8E-16 98.4 10.2 82 5-86 14-96 (392)
46 TIGR00903 2A0129 major facilit 99.3 9.9E-12 2.1E-16 99.6 9.7 83 17-99 2-84 (368)
47 TIGR00900 2A0121 H+ Antiporter 99.3 1.2E-11 2.7E-16 94.3 9.5 89 11-99 4-97 (365)
48 TIGR00879 SP MFS transporter, 99.3 1.2E-11 2.5E-16 97.0 9.3 88 7-94 29-124 (481)
49 TIGR00806 rfc RFC reduced fola 99.3 1.8E-11 3.9E-16 103.1 11.0 92 6-99 28-120 (511)
50 PRK10054 putative transporter; 99.3 4.8E-11 1E-15 95.6 11.3 96 4-99 5-101 (395)
51 PRK10473 multidrug efflux syst 99.3 6E-11 1.3E-15 93.6 11.5 89 11-99 8-96 (392)
52 PRK11195 lysophospholipid tran 99.3 2.5E-11 5.4E-16 97.2 9.5 86 9-94 6-91 (393)
53 cd06174 MFS The Major Facilita 99.3 4.4E-11 9.6E-16 90.2 10.3 92 9-100 2-93 (352)
54 PRK09874 drug efflux system pr 99.3 9.8E-11 2.1E-15 91.9 11.9 95 5-99 13-112 (408)
55 TIGR00712 glpT glycerol-3-phos 99.2 3.5E-11 7.7E-16 97.1 8.1 88 3-91 24-111 (438)
56 TIGR00899 2A0120 sugar efflux 99.2 1E-10 2.2E-15 90.5 10.1 87 13-99 4-92 (375)
57 TIGR00897 2A0118 polyol permea 99.2 2.6E-10 5.7E-15 90.9 11.3 85 4-88 11-95 (402)
58 COG2271 UhpC Sugar phosphate p 99.2 9.4E-11 2E-15 97.2 8.5 99 2-100 25-123 (448)
59 TIGR00889 2A0110 nucleoside tr 99.2 5.6E-10 1.2E-14 90.4 12.0 88 11-98 7-96 (418)
60 PRK11102 bicyclomycin/multidru 99.1 2E-10 4.2E-15 89.5 8.3 78 23-100 8-85 (377)
61 TIGR00898 2A0119 cation transp 99.1 4.4E-11 9.5E-16 97.4 4.1 74 27-100 110-186 (505)
62 TIGR00924 yjdL_sub1_fam amino 99.1 9.1E-10 2E-14 90.9 11.9 95 3-97 7-105 (475)
63 TIGR00896 CynX cyanate transpo 99.1 2.4E-10 5.2E-15 89.0 7.7 74 23-97 17-90 (355)
64 TIGR00883 2A0106 metabolite-pr 99.1 4.4E-10 9.5E-15 86.4 8.8 81 15-95 2-89 (394)
65 TIGR00805 oat sodium-independe 99.1 5.3E-11 1.2E-15 102.0 4.1 88 5-92 32-119 (633)
66 PRK10207 dipeptide/tripeptide 99.1 1.2E-09 2.7E-14 90.8 12.0 93 3-95 11-105 (489)
67 PTZ00207 hypothetical protein; 99.1 2.3E-09 5E-14 92.0 12.4 87 3-91 25-111 (591)
68 PRK11646 multidrug resistance 99.1 2.6E-09 5.6E-14 85.7 11.6 77 23-99 28-104 (400)
69 PRK09528 lacY galactoside perm 99.1 2.3E-09 5E-14 85.7 11.2 81 5-85 9-90 (420)
70 PF06779 DUF1228: Protein of u 99.0 4.1E-09 8.9E-14 70.0 9.2 80 19-98 5-84 (85)
71 PRK10489 enterobactin exporter 99.0 9.6E-10 2.1E-14 87.7 7.1 80 10-89 21-100 (417)
72 PRK15011 sugar efflux transpor 99.0 1E-08 2.3E-13 81.5 11.2 90 9-98 18-109 (393)
73 TIGR00882 2A0105 oligosacchari 98.9 1.8E-08 3.8E-13 79.9 11.9 78 8-85 4-82 (396)
74 TIGR00902 2A0127 phenyl propri 98.9 2.2E-08 4.7E-13 79.5 11.0 90 9-100 7-100 (382)
75 PRK08633 2-acyl-glycerophospho 98.8 2.8E-08 6.1E-13 88.0 11.1 88 12-99 16-108 (1146)
76 COG0738 FucP Fucose permease [ 98.8 3.5E-08 7.6E-13 81.6 9.9 101 3-103 10-113 (422)
77 KOG0252 Inorganic phosphate tr 98.8 3E-08 6.5E-13 83.6 9.4 94 3-96 38-139 (538)
78 PRK09584 tppB putative tripept 98.8 1.7E-07 3.8E-12 77.9 12.5 88 6-93 21-110 (500)
79 TIGR00890 2A0111 Oxalate/Forma 98.8 1.5E-07 3.2E-12 71.9 11.2 82 13-94 212-293 (377)
80 PF12832 MFS_1_like: MFS_1 lik 98.7 1.5E-07 3.2E-12 61.0 9.3 71 12-82 6-76 (77)
81 COG2223 NarK Nitrate/nitrite t 98.7 1.3E-07 2.9E-12 78.2 11.3 98 2-99 10-110 (417)
82 KOG2504 Monocarboxylate transp 98.7 4E-08 8.7E-13 82.9 7.9 96 5-100 45-140 (509)
83 KOG0255 Synaptic vesicle trans 98.7 2.7E-08 5.8E-13 82.0 6.0 68 33-100 110-177 (521)
84 PRK15462 dipeptide/tripeptide 98.7 3.6E-07 7.8E-12 77.0 12.7 87 5-91 8-96 (493)
85 KOG0254 Predicted transporter 98.7 1.1E-07 2.4E-12 78.8 9.3 93 7-99 46-147 (513)
86 PF00083 Sugar_tr: Sugar (and 98.7 3.9E-09 8.4E-14 84.5 0.4 90 11-100 5-108 (451)
87 PRK15011 sugar efflux transpor 98.7 4.7E-07 1E-11 72.0 11.9 68 29-96 240-307 (393)
88 TIGR00901 2A0125 AmpG-related 98.7 1.8E-07 3.9E-12 72.8 9.0 70 23-94 5-80 (356)
89 PF06609 TRI12: Fungal trichot 98.7 2.3E-07 5E-12 79.9 10.4 86 12-98 50-135 (599)
90 cd06174 MFS The Major Facilita 98.6 9E-07 2E-11 66.6 12.0 89 9-97 178-268 (352)
91 KOG0253 Synaptic vesicle trans 98.6 1.7E-07 3.6E-12 78.0 8.0 98 3-100 75-172 (528)
92 PRK09556 uhpT sugar phosphate 98.6 7.9E-07 1.7E-11 72.5 11.7 77 7-83 259-336 (467)
93 PRK06814 acylglycerophosphoeth 98.6 4.1E-07 8.9E-12 81.3 10.6 92 9-100 18-114 (1140)
94 PRK11128 putative 3-phenylprop 98.6 6.7E-07 1.4E-11 70.8 10.7 82 15-98 13-98 (382)
95 PRK11551 putative 3-hydroxyphe 98.5 2.1E-06 4.5E-11 67.8 12.4 72 24-95 238-309 (406)
96 TIGR00883 2A0106 metabolite-pr 98.5 2.4E-06 5.2E-11 65.6 12.4 73 8-80 221-294 (394)
97 KOG2615 Permease of the major 98.5 2.7E-07 5.8E-12 76.5 7.0 69 31-99 58-126 (451)
98 TIGR00792 gph sugar (Glycoside 98.5 2.4E-07 5.2E-12 73.6 6.6 75 20-94 14-93 (437)
99 PRK09528 lacY galactoside perm 98.5 1.1E-06 2.4E-11 70.2 10.5 80 18-98 240-319 (420)
100 PRK03699 putative transporter; 98.5 2.3E-06 5.1E-11 68.0 12.2 87 9-95 208-295 (394)
101 TIGR00900 2A0121 H+ Antiporter 98.5 2.7E-06 5.9E-11 64.8 11.8 70 24-93 229-299 (365)
102 TIGR01301 GPH_sucrose GPH fami 98.5 1.1E-06 2.4E-11 73.8 10.3 91 3-94 2-97 (477)
103 PRK03893 putative sialic acid 98.5 1.8E-06 4E-11 69.9 11.2 63 26-88 295-358 (496)
104 TIGR00891 2A0112 putative sial 98.5 3.1E-06 6.6E-11 65.7 11.9 60 24-83 257-316 (405)
105 TIGR00902 2A0127 phenyl propri 98.5 3.4E-06 7.3E-11 66.9 11.8 73 27-99 226-298 (382)
106 TIGR00895 2A0115 benzoate tran 98.5 5.1E-06 1.1E-10 64.0 12.5 70 8-77 252-321 (398)
107 PRK11128 putative 3-phenylprop 98.5 3.3E-06 7.1E-11 66.9 11.6 70 30-99 229-298 (382)
108 TIGR00899 2A0120 sugar efflux 98.5 3E-06 6.5E-11 65.5 10.9 67 30-96 224-290 (375)
109 PRK10642 proline/glycine betai 98.4 5.2E-06 1.1E-10 68.3 12.6 57 26-82 270-327 (490)
110 TIGR00897 2A0118 polyol permea 98.4 4.3E-06 9.4E-11 66.7 11.7 67 9-75 225-291 (402)
111 PRK03545 putative arabinose tr 98.4 5E-06 1.1E-10 65.8 11.7 75 22-96 222-296 (390)
112 TIGR00896 CynX cyanate transpo 98.4 5.8E-06 1.2E-10 64.4 11.9 70 24-93 215-285 (355)
113 PRK11010 ampG muropeptide tran 98.4 4.3E-06 9.4E-11 69.3 11.5 87 3-92 10-102 (491)
114 TIGR00879 SP MFS transporter, 98.4 4.5E-06 9.7E-11 65.5 10.6 85 5-89 283-367 (481)
115 PF05977 MFS_3: Transmembrane 98.4 4.3E-06 9.3E-11 70.8 11.3 84 4-87 8-91 (524)
116 TIGR00901 2A0125 AmpG-related 98.4 7.6E-06 1.7E-10 63.6 11.7 66 25-90 228-294 (356)
117 PRK11902 ampG muropeptide tran 98.4 5.9E-06 1.3E-10 65.8 11.0 80 12-93 5-90 (402)
118 PF03825 Nuc_H_symport: Nucleo 98.4 8.8E-06 1.9E-10 66.6 12.2 94 1-98 1-95 (400)
119 PRK09705 cynX putative cyanate 98.3 1.1E-05 2.4E-10 64.4 11.9 78 12-89 211-288 (393)
120 KOG2533 Permease of the major 98.3 2.5E-06 5.4E-11 72.0 8.4 95 6-100 45-140 (495)
121 PRK12307 putative sialic acid 98.3 1.8E-05 4E-10 62.8 12.8 64 25-88 250-313 (426)
122 PRK10473 multidrug efflux syst 98.3 1.4E-05 3.1E-10 63.0 11.5 65 31-95 229-293 (392)
123 TIGR00788 fbt folate/biopterin 98.3 8.4E-06 1.8E-10 67.4 10.5 91 2-93 22-118 (468)
124 PRK10406 alpha-ketoglutarate t 98.3 2E-05 4.2E-10 63.6 12.2 52 29-80 266-318 (432)
125 PRK15075 citrate-proton sympor 98.3 1.7E-05 3.8E-10 63.9 11.9 56 23-78 255-311 (434)
126 PRK10077 xylE D-xylose transpo 98.3 1.9E-05 4.2E-10 63.6 11.7 73 18-90 283-355 (479)
127 PF05631 DUF791: Protein of un 98.3 1.6E-05 3.5E-10 64.9 11.2 78 20-99 49-126 (354)
128 KOG2532 Permease of the major 98.2 5.7E-06 1.2E-10 69.3 8.6 64 33-96 65-128 (466)
129 PRK10091 MFS transport protein 98.2 1.6E-05 3.5E-10 62.9 10.6 64 26-89 220-283 (382)
130 TIGR00710 efflux_Bcr_CflA drug 98.2 2E-05 4.3E-10 61.0 10.9 62 29-90 229-291 (385)
131 TIGR00886 2A0108 nitrite extru 98.2 1.4E-05 3E-10 61.8 9.8 64 27-90 247-310 (366)
132 PRK09952 shikimate transporter 98.2 3.7E-05 8E-10 62.4 12.6 58 26-83 271-328 (438)
133 PRK03633 putative MFS family t 98.2 2.3E-05 5E-10 61.9 11.1 61 27-87 221-281 (381)
134 COG0477 ProP Permeases of the 98.2 2.5E-05 5.4E-10 55.7 10.2 83 11-93 7-91 (338)
135 PRK09874 drug efflux system pr 98.2 2.9E-05 6.3E-10 60.9 11.5 57 43-99 260-316 (408)
136 COG2223 NarK Nitrate/nitrite t 98.2 1.4E-05 3.1E-10 66.3 10.0 85 8-92 220-305 (417)
137 TIGR01299 synapt_SV2 synaptic 98.2 2.9E-05 6.3E-10 68.4 12.3 54 45-98 599-652 (742)
138 TIGR00893 2A0114 d-galactonate 98.2 3E-05 6.6E-10 59.0 10.8 65 8-72 217-282 (399)
139 PRK11102 bicyclomycin/multidru 98.2 3.5E-05 7.5E-10 60.0 11.2 50 31-80 220-269 (377)
140 TIGR00711 efflux_EmrB drug res 98.2 2.7E-05 5.8E-10 62.6 10.8 63 27-89 276-339 (485)
141 PRK15402 multidrug efflux syst 98.2 4E-05 8.6E-10 60.8 11.6 62 29-90 238-300 (406)
142 TIGR00880 2_A_01_02 Multidrug 98.2 1.3E-06 2.8E-11 57.6 2.7 52 47-98 4-55 (141)
143 KOG3764 Vesicular amine transp 98.2 3.1E-06 6.8E-11 70.5 5.1 67 34-100 99-165 (464)
144 PRK10504 putative transporter; 98.1 5.1E-05 1.1E-09 61.3 12.1 80 12-91 267-347 (471)
145 PRK11902 ampG muropeptide tran 98.1 4.5E-05 9.7E-10 60.8 11.5 58 28-85 232-290 (402)
146 PRK10133 L-fucose transporter; 98.1 5.8E-05 1.3E-09 61.7 12.4 70 24-93 277-347 (438)
147 PRK08633 2-acyl-glycerophospho 98.1 2.2E-05 4.7E-10 69.8 10.1 73 25-97 252-325 (1146)
148 PLN00028 nitrate transmembrane 98.1 5.5E-05 1.2E-09 62.3 11.4 43 29-71 276-318 (476)
149 PF13347 MFS_2: MFS/sugar tran 98.1 2.4E-05 5.2E-10 63.0 8.8 94 7-100 226-321 (428)
150 PRK11010 ampG muropeptide tran 98.1 6.4E-05 1.4E-09 62.4 11.4 66 18-83 235-301 (491)
151 PRK14995 methyl viologen resis 98.1 6.3E-05 1.4E-09 62.1 11.3 62 29-90 283-344 (495)
152 PRK10489 enterobactin exporter 98.1 5.4E-05 1.2E-09 60.4 10.5 72 25-96 242-314 (417)
153 TIGR02718 sider_RhtX_FptX side 98.1 3.6E-05 7.8E-10 60.9 9.3 71 8-78 3-76 (390)
154 TIGR00889 2A0110 nucleoside tr 98.1 3.2E-05 6.9E-10 62.7 9.1 81 11-91 213-301 (418)
155 TIGR00882 2A0105 oligosacchari 98.1 8.2E-05 1.8E-09 58.9 11.3 62 37-98 250-311 (396)
156 PRK09669 putative symporter Ya 98.0 1.5E-05 3.3E-10 64.5 7.2 74 20-93 24-102 (444)
157 PRK11195 lysophospholipid tran 98.0 5.9E-05 1.3E-09 60.4 10.3 65 30-95 230-294 (393)
158 TIGR01272 gluP glucose/galacto 98.0 0.00018 3.9E-09 56.5 12.8 84 8-91 142-228 (310)
159 PRK05122 major facilitator sup 98.0 0.00011 2.4E-09 57.9 11.7 68 28-97 238-305 (399)
160 PF05977 MFS_3: Transmembrane 98.0 5.7E-05 1.2E-09 64.1 10.6 77 26-102 238-315 (524)
161 PRK12382 putative transporter; 98.0 9.4E-05 2E-09 58.3 10.5 71 25-97 235-305 (392)
162 PF11700 ATG22: Vacuole efflux 97.9 0.0002 4.3E-09 60.1 12.1 85 6-90 281-368 (477)
163 PRK09848 glucuronide transport 97.9 4.6E-05 9.9E-10 61.7 8.1 70 10-79 12-87 (448)
164 PRK15034 nitrate/nitrite trans 97.9 0.00011 2.5E-09 61.6 10.2 77 8-85 254-330 (462)
165 COG2814 AraJ Arabinose efflux 97.9 0.00013 2.8E-09 60.3 10.3 95 4-99 210-305 (394)
166 PRK10213 nepI ribonucleoside t 97.9 0.00028 6.1E-09 56.5 12.1 57 26-83 237-293 (394)
167 TIGR00792 gph sugar (Glycoside 97.9 8.6E-05 1.9E-09 59.0 8.9 80 11-91 227-307 (437)
168 COG2270 Permeases of the major 97.9 8E-05 1.7E-09 62.2 8.8 88 3-91 251-338 (438)
169 TIGR00887 2A0109 phosphate:H+ 97.9 0.00011 2.4E-09 60.6 9.6 64 27-90 309-384 (502)
170 TIGR02718 sider_RhtX_FptX side 97.8 0.00025 5.4E-09 56.1 10.6 60 21-81 224-284 (390)
171 PF01306 LacY_symp: LacY proto 97.8 0.00014 3.1E-09 60.3 9.3 76 2-77 3-79 (412)
172 TIGR00892 2A0113 monocarboxyla 97.8 0.00025 5.3E-09 58.1 10.5 87 12-98 247-337 (455)
173 COG2807 CynX Cyanate permease 97.8 0.00018 4E-09 59.3 9.5 69 22-90 28-96 (395)
174 PRK11273 glpT sn-glycerol-3-ph 97.8 0.00051 1.1E-08 55.8 12.0 65 8-72 255-322 (452)
175 TIGR02332 HpaX 4-hydroxyphenyl 97.8 0.00044 9.6E-09 55.7 11.0 65 9-73 245-311 (412)
176 PRK11663 regulatory protein Uh 97.8 0.00056 1.2E-08 55.3 11.5 61 8-68 245-306 (434)
177 PRK10429 melibiose:sodium symp 97.8 0.00015 3.2E-09 59.6 8.2 79 12-90 12-96 (473)
178 PF07690 MFS_1: Major Facilita 97.8 0.00024 5.3E-09 53.9 8.9 69 23-91 223-293 (352)
179 PRK11043 putative transporter; 97.7 0.00085 1.8E-08 53.0 11.8 58 27-84 224-281 (401)
180 PRK06814 acylglycerophosphoeth 97.7 0.00025 5.4E-09 63.7 9.5 84 7-90 226-310 (1140)
181 KOG3762 Predicted transporter 97.7 2.3E-05 5E-10 67.4 2.6 88 7-94 12-100 (618)
182 PRK09848 glucuronide transport 97.6 0.00045 9.7E-09 55.9 8.9 82 11-92 233-315 (448)
183 PRK10429 melibiose:sodium symp 97.6 0.00039 8.6E-09 57.0 8.5 76 13-88 238-313 (473)
184 PF03137 OATP: Organic Anion T 97.6 1.6E-05 3.5E-10 67.6 0.0 88 7-95 4-91 (539)
185 TIGR00881 2A0104 phosphoglycer 97.5 0.0013 2.8E-08 50.2 9.9 62 8-69 218-280 (379)
186 PF06813 Nodulin-like: Nodulin 97.5 0.00074 1.6E-08 52.6 8.4 84 4-89 1-84 (250)
187 TIGR00894 2A0114euk Na(+)-depe 97.5 0.0028 6E-08 51.4 12.1 65 7-71 262-327 (465)
188 KOG2504 Monocarboxylate transp 97.5 0.0012 2.7E-08 55.8 10.3 94 6-99 298-393 (509)
189 KOG0569 Permease of the major 97.4 0.0012 2.5E-08 56.0 9.2 80 12-91 17-110 (485)
190 TIGR00712 glpT glycerol-3-phos 97.4 0.0019 4.1E-08 52.2 10.2 45 27-71 272-317 (438)
191 PRK10054 putative transporter; 97.4 0.0008 1.7E-08 53.9 7.9 62 34-95 237-299 (395)
192 TIGR00898 2A0119 cation transp 97.4 0.0015 3.3E-08 53.2 9.5 49 46-94 360-408 (505)
193 PRK11462 putative transporter; 97.4 0.0038 8.3E-08 51.4 11.6 70 14-83 236-305 (460)
194 PRK09669 putative symporter Ya 97.3 0.0026 5.7E-08 51.5 9.7 73 14-86 237-309 (444)
195 TIGR00885 fucP L-fucose:H+ sym 97.2 0.0099 2.1E-07 48.2 12.5 78 17-94 244-322 (410)
196 COG3104 PTR2 Dipeptide/tripept 97.2 0.0075 1.6E-07 51.4 11.6 85 8-92 23-113 (498)
197 COG2271 UhpC Sugar phosphate p 97.2 0.0075 1.6E-07 50.7 11.2 73 4-76 250-325 (448)
198 KOG0569 Permease of the major 97.2 0.0051 1.1E-07 52.2 10.3 88 3-90 267-354 (485)
199 PF13347 MFS_2: MFS/sugar tran 97.1 0.0003 6.4E-09 56.7 2.6 71 21-91 17-92 (428)
200 PRK11646 multidrug resistance 97.0 0.014 3E-07 46.9 11.1 71 27-97 229-300 (400)
201 KOG2325 Predicted transporter/ 96.9 0.0013 2.7E-08 55.9 4.7 86 2-87 30-118 (488)
202 KOG0254 Predicted transporter 96.9 0.0058 1.3E-07 50.8 8.5 64 27-91 316-379 (513)
203 TIGR00805 oat sodium-independe 96.9 0.0083 1.8E-07 51.9 9.5 79 7-85 331-413 (633)
204 COG2211 MelB Na+/melibiose sym 96.8 0.01 2.2E-07 50.2 9.1 83 10-92 240-323 (467)
205 KOG3626 Organic anion transpor 96.6 0.001 2.2E-08 58.9 1.9 87 4-90 95-181 (735)
206 PRK11652 emrD multidrug resist 96.6 0.046 1E-06 43.0 11.1 44 31-74 233-276 (394)
207 KOG4686 Predicted sugar transp 96.5 0.02 4.4E-07 47.0 8.4 70 6-77 267-336 (459)
208 KOG0253 Synaptic vesicle trans 96.4 0.029 6.3E-07 47.3 9.0 86 8-93 331-433 (528)
209 TIGR00903 2A0129 major facilit 96.3 0.11 2.3E-06 41.7 11.7 60 8-71 194-253 (368)
210 PRK11462 putative transporter; 96.2 0.026 5.6E-07 46.6 8.0 67 26-92 30-101 (460)
211 KOG2533 Permease of the major 96.2 0.033 7.1E-07 47.3 8.7 78 8-85 275-357 (495)
212 KOG2563 Permease of the major 96.1 0.035 7.6E-07 47.1 8.3 89 2-91 41-129 (480)
213 PRK15403 multidrug efflux syst 95.6 0.23 5E-06 40.0 10.7 50 24-73 236-286 (413)
214 PF01306 LacY_symp: LacY proto 95.4 0.11 2.4E-06 43.3 8.4 86 12-98 231-316 (412)
215 KOG2816 Predicted transporter 95.3 0.096 2.1E-06 44.1 7.9 84 7-90 23-111 (463)
216 KOG2532 Permease of the major 95.0 0.42 9E-06 40.3 10.9 65 6-70 258-323 (466)
217 TIGR00926 2A1704 Peptide:H+ sy 95.0 0.17 3.8E-06 44.3 8.8 67 25-91 7-74 (654)
218 COG2807 CynX Cyanate permease 94.6 0.66 1.4E-05 38.7 10.7 72 21-92 223-295 (395)
219 KOG2816 Predicted transporter 94.6 0.049 1.1E-06 45.9 4.2 104 3-106 238-343 (463)
220 PF11700 ATG22: Vacuole efflux 94.6 0.34 7.4E-06 40.8 9.2 49 43-91 72-121 (477)
221 TIGR00788 fbt folate/biopterin 94.2 0.14 3E-06 42.5 6.0 55 34-88 281-335 (468)
222 KOG0637 Sucrose transporter an 93.9 0.041 8.9E-07 46.9 2.5 69 29-97 55-128 (498)
223 PF06963 FPN1: Ferroportin1 (F 93.9 1 2.2E-05 37.7 10.6 83 5-87 1-84 (432)
224 TIGR00769 AAA ADP/ATP carrier 93.8 1 2.2E-05 38.2 10.6 85 3-91 4-94 (472)
225 COG2211 MelB Na+/melibiose sym 93.5 0.27 5.8E-06 41.7 6.7 82 12-93 18-105 (467)
226 PF03092 BT1: BT1 family; Int 93.4 0.35 7.6E-06 39.9 7.1 64 26-90 10-78 (433)
227 KOG0252 Inorganic phosphate tr 93.0 0.13 2.7E-06 44.2 3.8 89 6-94 304-401 (538)
228 PF03825 Nuc_H_symport: Nucleo 92.8 3.1 6.6E-05 34.1 11.7 76 16-91 217-293 (400)
229 PF05978 UNC-93: Ion channel r 92.7 1.5 3.3E-05 31.8 8.8 48 43-90 38-86 (156)
230 COG2270 Permeases of the major 92.6 0.71 1.5E-05 39.0 7.8 53 41-93 58-111 (438)
231 KOG3764 Vesicular amine transp 92.4 0.098 2.1E-06 44.2 2.4 68 32-99 297-366 (464)
232 PF00083 Sugar_tr: Sugar (and 92.1 0.0015 3.2E-08 52.3 -8.4 83 5-89 252-334 (451)
233 PRK10207 dipeptide/tripeptide 91.9 1.8 3.8E-05 36.3 9.4 43 44-86 312-361 (489)
234 KOG4332 Predicted sugar transp 91.0 0.079 1.7E-06 43.3 0.5 64 32-96 63-126 (454)
235 COG0738 FucP Fucose permease [ 90.6 9.6 0.00021 32.2 12.5 81 16-96 246-327 (422)
236 KOG1237 H+/oligopeptide sympor 89.1 7.4 0.00016 33.8 10.9 99 3-105 34-134 (571)
237 TIGR00924 yjdL_sub1_fam amino 88.8 7 0.00015 32.4 10.3 75 16-90 283-368 (475)
238 PRK09584 tppB putative tripept 88.6 7 0.00015 32.7 10.2 52 43-94 318-373 (500)
239 PF06609 TRI12: Fungal trichot 87.1 9 0.00019 33.6 10.3 87 5-91 309-400 (599)
240 KOG0255 Synaptic vesicle trans 86.9 10 0.00022 31.2 10.2 67 27-96 339-405 (521)
241 PF03209 PUCC: PUCC protein; 85.5 10 0.00022 31.8 9.4 59 29-87 232-291 (403)
242 TIGR00880 2_A_01_02 Multidrug 85.4 7.3 0.00016 24.8 10.3 40 41-80 87-126 (141)
243 TIGR01272 gluP glucose/galacto 85.1 12 0.00026 29.2 9.3 47 32-78 255-301 (310)
244 PRK03612 spermidine synthase; 84.8 19 0.00042 30.7 11.1 40 32-71 41-80 (521)
245 PF06963 FPN1: Ferroportin1 (F 81.9 27 0.00059 29.3 10.7 74 9-82 261-334 (432)
246 KOG3574 Acetyl-CoA transporter 79.4 3.3 7.1E-05 35.3 4.3 71 2-75 27-102 (510)
247 KOG0637 Sucrose transporter an 78.9 11 0.00025 32.4 7.5 57 42-98 332-389 (498)
248 PF03209 PUCC: PUCC protein; 78.1 6 0.00013 33.2 5.5 45 31-76 5-54 (403)
249 KOG4830 Predicted sugar transp 75.2 7 0.00015 32.0 5.0 65 9-73 20-93 (412)
250 KOG3762 Predicted transporter 74.2 4.9 0.00011 35.4 4.1 89 10-99 376-464 (618)
251 KOG2601 Iron transporter [Inor 69.0 42 0.00092 28.7 8.4 84 7-90 28-112 (503)
252 PF03137 OATP: Organic Anion T 68.6 1.6 3.5E-05 37.3 0.0 68 4-71 303-372 (539)
253 KOG2615 Permease of the major 67.6 75 0.0016 27.1 9.6 85 1-85 94-203 (451)
254 KOG2563 Permease of the major 66.4 56 0.0012 28.1 8.7 72 2-75 264-335 (480)
255 KOG4686 Predicted sugar transp 64.3 35 0.00076 28.5 6.9 40 30-70 378-417 (459)
256 PF01770 Folate_carrier: Reduc 64.0 55 0.0012 27.5 8.2 87 7-95 7-95 (412)
257 PRK13183 psbN photosystem II r 63.7 12 0.00025 22.1 3.0 32 75-112 9-40 (46)
258 TIGR00771 DcuC c4-dicarboxylat 63.7 27 0.00058 28.8 6.3 50 13-62 308-359 (388)
259 PF03092 BT1: BT1 family; Int 62.4 65 0.0014 26.5 8.3 33 48-80 131-163 (433)
260 PRK15462 dipeptide/tripeptide 62.0 67 0.0015 27.4 8.5 39 42-80 139-177 (493)
261 PF10785 NADH-u_ox-rdase: NADH 60.5 33 0.00071 22.5 5.1 43 51-93 28-77 (86)
262 KOG3098 Uncharacterized conser 60.1 80 0.0017 26.9 8.6 94 13-114 247-347 (461)
263 COG4664 FcbT3 TRAP-type mannit 59.2 24 0.00052 29.6 5.1 55 8-63 340-395 (447)
264 CHL00020 psbN photosystem II p 58.5 12 0.00027 21.7 2.4 31 76-112 7-37 (43)
265 KOG3626 Organic anion transpor 54.4 66 0.0014 29.2 7.4 75 6-80 392-470 (735)
266 PF13940 Ldr_toxin: Toxin Ldr, 53.1 38 0.00083 18.7 3.8 29 39-67 2-34 (35)
267 PF13493 DUF4118: Domain of un 51.8 19 0.00042 23.3 3.0 23 49-71 83-105 (105)
268 COG3202 ATP/ADP translocase [E 50.3 1.7E+02 0.0037 25.4 9.2 64 28-91 45-112 (509)
269 PF05232 BTP: Bacterial Transm 49.1 63 0.0014 20.1 6.8 53 19-71 12-64 (67)
270 TIGR02230 ATPase_gene1 F0F1-AT 46.1 92 0.002 21.1 5.9 34 52-85 53-87 (100)
271 PRK15060 L-dehydroascorbate tr 44.3 66 0.0014 27.1 5.6 53 9-62 322-375 (425)
272 PF02468 PsbN: Photosystem II 43.7 34 0.00073 19.9 2.7 15 98-112 23-37 (43)
273 PF06197 DUF998: Protein of un 43.6 1.1E+02 0.0025 21.4 6.8 59 31-89 26-87 (184)
274 KOG3097 Predicted membrane pro 41.8 1.3E+02 0.0028 25.2 6.8 44 37-80 306-349 (390)
275 PF04911 ATP-synt_J: ATP synth 39.8 38 0.00083 20.6 2.6 31 75-114 16-46 (54)
276 PF02632 BioY: BioY family; I 38.5 92 0.002 22.3 4.9 23 49-71 61-83 (148)
277 PF07786 DUF1624: Protein of u 36.7 1.7E+02 0.0037 21.5 8.5 46 66-111 119-164 (223)
278 COG5336 Uncharacterized protei 36.2 1E+02 0.0022 21.6 4.6 30 43-72 44-74 (116)
279 PF11283 DUF3084: Protein of u 36.0 49 0.0011 21.7 2.9 20 56-75 11-34 (79)
280 COG1268 BioY Uncharacterized c 34.8 1.4E+02 0.0031 22.3 5.6 22 49-70 90-111 (184)
281 PF04341 DUF485: Protein of un 34.7 1.3E+02 0.0028 19.5 6.6 47 2-48 12-59 (91)
282 PF13404 HTH_AsnC-type: AsnC-t 33.2 80 0.0017 17.7 3.2 26 17-42 1-33 (42)
283 PRK10654 dcuC C4-dicarboxylate 32.9 1.6E+02 0.0035 25.0 6.2 42 23-64 373-414 (455)
284 TIGR00806 rfc RFC reduced fola 31.4 1.4E+02 0.003 26.0 5.6 57 42-98 299-357 (511)
285 PF07803 GSG-1: GSG1-like prot 31.2 77 0.0017 22.3 3.4 39 69-107 5-43 (118)
286 KOG3098 Uncharacterized conser 30.8 3.3E+02 0.0072 23.2 7.8 53 42-94 50-103 (461)
287 COG1593 DctQ TRAP-type C4-dica 30.6 85 0.0019 26.2 4.1 53 9-62 276-329 (379)
288 COG1230 CzcD Co/Zn/Cd efflux s 29.4 3E+02 0.0066 22.1 8.1 99 3-107 22-123 (296)
289 PF01770 Folate_carrier: Reduc 28.9 3.5E+02 0.0077 22.7 9.9 62 37-98 281-344 (412)
290 PRK11469 hypothetical protein; 28.7 2.4E+02 0.0053 20.8 9.9 73 6-85 106-179 (188)
291 PRK02237 hypothetical protein; 28.2 1.9E+02 0.0041 20.1 4.9 32 41-72 56-87 (109)
292 PF02694 UPF0060: Uncharacteri 28.1 1.4E+02 0.003 20.6 4.2 33 40-72 53-85 (107)
293 PF02659 DUF204: Domain of unk 27.6 1.4E+02 0.0031 17.8 6.4 25 55-79 38-62 (67)
294 TIGR00210 gltS sodium--glutama 27.5 1.6E+02 0.0034 24.6 5.2 13 30-42 145-157 (398)
295 KOG2399 K+-dependent Na+:Ca2+ 27.5 4.4E+02 0.0096 23.4 11.3 91 19-113 460-552 (605)
296 KOG1277 Endosomal membrane pro 27.2 1.1E+02 0.0024 26.7 4.3 42 29-73 314-360 (593)
297 PF13272 DUF4063: Protein of u 27.2 1E+02 0.0022 21.3 3.4 30 37-68 19-48 (107)
298 PRK12875 ubiA prenyltransferas 27.1 59 0.0013 25.7 2.6 38 65-102 202-239 (282)
299 PF09527 ATPase_gene1: Putativ 25.7 1.4E+02 0.0031 17.2 6.2 30 56-85 15-45 (55)
300 KOG1330 Sugar transporter/spin 24.9 84 0.0018 27.2 3.2 30 41-70 282-312 (493)
301 PF11286 DUF3087: Protein of u 24.0 1.6E+02 0.0034 21.9 4.1 30 72-107 17-46 (165)
302 PF06808 DctM: DctM-like trans 23.4 1.1E+02 0.0025 25.2 3.7 50 10-59 323-373 (416)
303 PF05631 DUF791: Protein of un 23.1 4.3E+02 0.0094 21.8 8.5 38 29-68 268-305 (354)
304 PF08080 zf-RNPHF: RNPHF zinc 21.7 31 0.00066 19.3 0.0 10 65-74 3-12 (36)
305 cd01709 RT_like_1 RT_like_1: A 21.5 1.7E+02 0.0038 24.1 4.3 61 20-80 195-255 (346)
306 PTZ00207 hypothetical protein; 20.5 4.1E+02 0.009 23.3 6.7 58 8-65 355-415 (591)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.75 E-value=1.5e-17 Score=133.78 Aligned_cols=99 Identities=8% Similarity=-0.130 Sum_probs=94.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
|.||+.+.++++++++|++|+.+++.+.|.+++|+|+|+.|.|++.+++.+++++++++.|+++||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
++++.++++++|++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~ 102 (412)
T TIGR02332 84 GIASTATMFATGPESLYLL 102 (412)
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 9999999999998876543
No 2
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.3e-18 Score=141.66 Aligned_cols=100 Identities=28% Similarity=0.266 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
++..++++.++++..++|++||..++.+++.+++.+|++++..|++.+.+.+.+.+++|++|+|+|||+||+++.+|+.+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhHh
Q 039825 81 EPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~~~l~~ 100 (117)
|++++++++++..|+++++.
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~ 127 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLC 127 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987764
No 3
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.71 E-value=1.8e-16 Score=130.31 Aligned_cols=100 Identities=14% Similarity=0.003 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
|.|+|.+++.++++.++..+|+++++..+|.+.+|+|.+..|.+|+.+++.++++++++++|+++||+|||+++..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhHh
Q 039825 81 EPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~~~l~~ 100 (117)
+.++++.|++++|++.+++.
T Consensus 81 ~~~~~~~~~~a~~~~~li~~ 100 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIAT 100 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998886653
No 4
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.68 E-value=7.5e-16 Score=119.58 Aligned_cols=98 Identities=11% Similarity=-0.062 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++|+.+..++++++.+++|+.+++.+.|.+++++|++++|.|++.+.+.+++.++++++|+++||+|||+++..+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++++++++++|++..++.
T Consensus 89 ~~~~~~~~~~~~~~l~~~ 106 (405)
T TIGR00891 89 AGTLACGFAPGYITMFIA 106 (405)
T ss_pred HHHHHHHHhccHHHHHHH
Confidence 999999999998876543
No 5
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.67 E-value=3.1e-16 Score=127.56 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
|+++.++.++.++++++++||.+++.+.|.+++|+|++.+|.|++.+++.++++++++++|+++||+|||+++..++++|
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----ccccchhhH
Q 039825 82 PVPVPRKAE-----TQSHRIPLV 99 (117)
Q Consensus 82 sl~t~l~a~-----a~s~~~~l~ 99 (117)
++++++.++ ++|++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~ 127 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIA 127 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHH
Confidence 998887766 577777655
No 6
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.63 E-value=4.9e-15 Score=119.31 Aligned_cols=93 Identities=8% Similarity=-0.100 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC---CChhhhHHHHHHHH---HHHHHHHHHHHHHhhhhchHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALH---TDPIGLDSLTLFRS---IVQSSCYPLAAYLFVHHNRAHVIAL 76 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~---ls~~q~G~l~s~~~---l~~~l~~p~~G~LaDR~GRr~vl~~ 76 (117)
+|++++...++++++|++|+.+++++.|.+.+|++ .+..|.+...+.+. ++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45567778889999999999999999999999984 67776655555444 4445999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 039825 77 ESNTEPVPVPRKAETQSHR 95 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a~s~~ 95 (117)
++.+|+++++++++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ 117 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYE 117 (432)
T ss_pred HHHHHHHHHHHHhhcCCch
Confidence 9999999999999999885
No 7
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.60 E-value=1.2e-14 Score=115.38 Aligned_cols=98 Identities=11% Similarity=-0.038 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.+|+.+..+.++++.+.+|+....++.|.+++|+|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++++.+++++|++.+++.
T Consensus 95 ~~~~~~~~~~~~~~l~~~ 112 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLS 112 (426)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 999999999888776554
No 8
>PRK03699 putative transporter; Provisional
Probab=99.60 E-value=1.4e-14 Score=115.10 Aligned_cols=97 Identities=10% Similarity=-0.071 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
|||+..+.+.+++++++.+...++.++|++++++|+|.+|.|++.+.+.+++.++++++|+++||+|||+++..+..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhH
Q 039825 83 VPVPRKAETQSHRIPLV 99 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~ 99 (117)
+++.++++++|++.+++
T Consensus 84 i~~~l~~~~~~~~~~~~ 100 (394)
T PRK03699 84 LAVAGLMFSHSLALFSI 100 (394)
T ss_pred HHHHHHHHcchHHHHHH
Confidence 99999999988876543
No 9
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.59 E-value=2e-14 Score=113.44 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++|.++.++.+..+++++|++.++...|.+.+++|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++.+++++++|++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~ 109 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVA 109 (406)
T ss_pred HHHHHHHHhccHHHHHHH
Confidence 999999999988775544
No 10
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.59 E-value=2.1e-14 Score=113.38 Aligned_cols=100 Identities=11% Similarity=-0.090 Sum_probs=94.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
|+..++.++.+.++.++..++..++.+.+|.+.+|+|+|..|.|++.+.+.+++.++++++|+++||+|||+++..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhHh
Q 039825 81 EPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~~~l~~ 100 (117)
+++++..+++++|++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~ 100 (381)
T PRK03633 81 FAAGCAGLGLMVGFWSWLAW 100 (381)
T ss_pred HHHHHHHHHHhccHHHHHHH
Confidence 99999999999998886654
No 11
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.58 E-value=3.7e-15 Score=113.92 Aligned_cols=96 Identities=9% Similarity=-0.071 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
|+++++......+...++...++..|++++|+|+|.+|.|++.+++.+++.+++|++|+++||+|||+++..+..+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred eEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 34445555555556667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhHh
Q 039825 85 VPRKAETQSHRIPLVA 100 (117)
Q Consensus 85 t~l~a~a~s~~~~l~~ 100 (117)
+.++++++|++.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 82 FTFYAIADSLAALYLT 97 (377)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886654
No 12
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.58 E-value=3e-14 Score=115.27 Aligned_cols=99 Identities=13% Similarity=-0.011 Sum_probs=93.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+++|+.+..++++++++.+|.+.++.++|.+.+++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
+++.+++++++|++.+++.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~ 114 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIA 114 (496)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 9999999999888775544
No 13
>PRK15075 citrate-proton symporter; Provisional
Probab=99.56 E-value=3.9e-14 Score=114.16 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHH-HHH-----HHHHHHHHHHHHHHhhhhchHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLT-LFR-----SIVQSSCYPLAAYLFVHHNRAHVIA 75 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~-s~~-----~l~~~l~~p~~G~LaDR~GRr~vl~ 75 (117)
.+||++...+.+++++|++|+.+++.+.|.+++|++.++.|.+.+. +.. .++..++++++|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 4678889999999999999999999999999999999999876554 322 2333578999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccch
Q 039825 76 LESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 76 ~~~~~~sl~t~l~a~a~s~~~ 96 (117)
.+..+++++++++++++|++.
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~ 111 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYAT 111 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHH
Confidence 999999999999999999874
No 14
>PRK03545 putative arabinose transporter; Provisional
Probab=99.56 E-value=4.4e-14 Score=111.72 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=83.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+++|..++.+.++.++...+..+...++|.+++|+|+|++|.|++.+.+.++++++++++|+++||+|||+++..+..++
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34565566666655554444445556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
.+++..+++++|++.+++.
T Consensus 85 ~~~~~~~~~~~~~~~l~~~ 103 (390)
T PRK03545 85 IASHVLSALAWNFTVLLIS 103 (390)
T ss_pred HHHHHHHHHhccHHHHHHH
Confidence 9999999999999987654
No 15
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.56 E-value=4.4e-14 Score=123.30 Aligned_cols=98 Identities=12% Similarity=-0.052 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.+|+++++++++.+++.+|.++++.++|.++++++++..+.|++.+++.+++.++++++|+++||+|||+++.+++++++
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~ 243 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG 243 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++++++++++|++.++++
T Consensus 244 i~~ll~afa~s~~~llv~ 261 (742)
T TIGR01299 244 FFAFFSSFVQGYGFFLFC 261 (742)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 999999999998876554
No 16
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.55 E-value=6.1e-14 Score=115.06 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh----hHHH--HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG----LDSL--TLFRSIVQSSCYPLAAYLFVHHNRAHVIALES 78 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q----~G~l--~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~ 78 (117)
|+++...++++++|++|..+++.+.|.++++|+.+..+ .+.+ .++..+++.++++++|+++||+|||+++..++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 67788889999999999999999999999999754432 2222 46778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccch
Q 039825 79 NTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 79 ~~~sl~t~l~a~a~s~~~ 96 (117)
++++++++++++++|+..
T Consensus 95 ~l~~i~~~~~a~~~~~~~ 112 (490)
T PRK10642 95 VIMSISTFCIGLIPSYAT 112 (490)
T ss_pred HHHHHHHHHHHhcccHHH
Confidence 999999999999999874
No 17
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.54 E-value=4.6e-14 Score=112.61 Aligned_cols=78 Identities=10% Similarity=0.005 Sum_probs=74.4
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
..+++++|.+++|+|+|..|.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++++.+++++|+..+++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~ 103 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS 103 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999999999999999986654
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.53 E-value=6.8e-14 Score=112.90 Aligned_cols=97 Identities=8% Similarity=-0.107 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.|++++....+++++.++|+..++..+|.+.+++|+|++|.|++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhH
Q 039825 83 VPVPRKAETQSHRIPLV 99 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~ 99 (117)
++++++++++|++.+++
T Consensus 100 ~~~~~~~~~~~~~~l~~ 116 (434)
T PRK11663 100 IINILFGFSSSLWAFAL 116 (434)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99999999999887654
No 19
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.51 E-value=2.1e-13 Score=109.47 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
+++..+.++.+++.+|..+++...|.+.+++|.+..+.|++.+.+.+++.++.|++|+++||+|||+++..+..++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccchhhHh
Q 039825 86 PRKAETQSHRIPLVA 100 (117)
Q Consensus 86 ~l~a~a~s~~~~l~~ 100 (117)
..+++++|+..+++.
T Consensus 82 ~~~~~~~~~~~l~~~ 96 (485)
T TIGR00711 82 LLCGVAPNLELMIIF 96 (485)
T ss_pred HHHhCcCCHHHHHHH
Confidence 999999998876554
No 20
>PRK09952 shikimate transporter; Provisional
Probab=99.50 E-value=3.3e-13 Score=109.35 Aligned_cols=92 Identities=8% Similarity=-0.052 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHh--CCChhhhHHHH-----HHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKE-VGAAL--HTDPIGLDSLT-----LFRSIVQSSCYPLAAYLFVHHNRAHVI 74 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~--~ls~~q~G~l~-----s~~~l~~~l~~p~~G~LaDR~GRr~vl 74 (117)
+||+++....+++++|++|+.+++.+.|. +.+++ ++++. .|++. ++..+++.+++++.|+++||+|||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 56788889999999999999999998875 56676 78876 56664 245567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 039825 75 ALESNTEPVPVPRKAETQSHR 95 (117)
Q Consensus 75 ~~~~~~~sl~t~l~a~a~s~~ 95 (117)
..+..+|+++++++++++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFS 118 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHH
Confidence 999999999999999999987
No 21
>PRK10504 putative transporter; Provisional
Probab=99.50 E-value=3.9e-13 Score=108.52 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
++.+++++++++++.+|...+...+|.+.+|+|+++.+.|++.+.+.+++.++++++|+++||+|||+++..+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 55678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhH
Q 039825 85 VPRKAETQSHRIPLV 99 (117)
Q Consensus 85 t~l~a~a~s~~~~l~ 99 (117)
.+++++++|++.+++
T Consensus 89 ~~~~~~~~~~~~l~~ 103 (471)
T PRK10504 89 SLFCALSGTLNELLL 103 (471)
T ss_pred HHHHHHhCCHHHHHH
Confidence 999999988776544
No 22
>PRK10133 L-fucose transporter; Provisional
Probab=99.48 E-value=7.5e-13 Score=107.97 Aligned_cols=98 Identities=12% Similarity=-0.117 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
+....++.+.+..++-.+++.+.+...|.+++++|+++.|.|++.+.+.+++.+++++.|+++||+|||+++..++.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34556677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhccccchhhHh
Q 039825 83 VPVPRK---AETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~---a~a~s~~~~l~~ 100 (117)
++++++ ++++|+..+++.
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~ 123 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 999885 567888876654
No 23
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.47 E-value=7.7e-13 Score=108.64 Aligned_cols=97 Identities=5% Similarity=-0.206 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++++.+...+...+.+.++....++..|.+.+|+|++..|.|++.+.+.+++.+++++.|+++||+|||+++..+.++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 46777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhH
Q 039825 83 VPVPRKAETQSHRIPLV 99 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~ 99 (117)
++++++++++|+..+++
T Consensus 113 ~~~~~~~~~~s~~~l~~ 129 (476)
T PLN00028 113 PAVFCMSLVSSATGFIA 129 (476)
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 99999999998877654
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=99.47 E-value=8.6e-13 Score=101.75 Aligned_cols=98 Identities=16% Similarity=-0.006 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+++|+.+..+.+.++.+.+|....+...|.+.+++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 34667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhH
Q 039825 82 PVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~ 99 (117)
+++..++++++|++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~ 110 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLI 110 (398)
T ss_pred HHHHHHHHHccchHHHHH
Confidence 999999999988876544
No 25
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.47 E-value=4.1e-13 Score=106.27 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
+.+..+.++.+.-.+.+..+...+|.+++|+|++.+|.|++.+.+.+++.+++|++|+++||+|||+++..+..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 44566677778888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccchhhHh
Q 039825 86 PRKAETQSHRIPLVA 100 (117)
Q Consensus 86 ~l~a~a~s~~~~l~~ 100 (117)
+++++++|++.+++.
T Consensus 83 ~l~~~~~~~~~l~~~ 97 (382)
T PRK10091 83 AMFTLSSSYLMLAIG 97 (382)
T ss_pred HHHHHhCcHHHHHHH
Confidence 999999999987765
No 26
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.46 E-value=2e-13 Score=104.44 Aligned_cols=88 Identities=7% Similarity=-0.190 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcc
Q 039825 13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQ 92 (117)
Q Consensus 13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~ 92 (117)
++++.+++|+..++.+.|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.++++++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHh
Q 039825 93 SHRIPLVA 100 (117)
Q Consensus 93 s~~~~l~~ 100 (117)
|++..++.
T Consensus 82 ~~~~~~~~ 89 (379)
T TIGR00881 82 SLWVMAAL 89 (379)
T ss_pred hHHHHHHH
Confidence 98876554
No 27
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.46 E-value=6.8e-13 Score=104.67 Aligned_cols=99 Identities=8% Similarity=-0.031 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+|-+|.+.++.+...+..+...+..+.+|.+.+++|+++.+.|++.+++.+++.++++++|+++||+|||+++..+...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 56677888888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
.++.+.+.+++|++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~ 102 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAA 102 (394)
T ss_pred HHHHHHHHHHccHHHHHHH
Confidence 9999999999888775543
No 28
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.5e-13 Score=108.68 Aligned_cols=99 Identities=18% Similarity=0.048 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
++.|..+..+.++.|.-..++.+...++|++.+|+|+|..+.|+++++|.+++++++|+...+.||++||+++.....++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
.++.++|++|+||+.+++.
T Consensus 89 i~~n~l~alAp~f~~Ll~a 107 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLA 107 (394)
T ss_pred HHHHHHHHHhccHHHHHHH
Confidence 9999999999999997764
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.46 E-value=1.4e-13 Score=111.34 Aligned_cols=96 Identities=8% Similarity=-0.157 Sum_probs=87.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------------------HhCCChhhhHHHHHHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGA----------------------ALHTDPIGLDSLTLFRSIVQSSCYP 59 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~----------------------~~~ls~~q~G~l~s~~~l~~~l~~p 59 (117)
+.||.+..++.+++.+++.||..++...+.+++ |++++..+.|.+.+++.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999988887 8999999999999999999999999
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc--cccchh
Q 039825 60 LAAYLFVHHNRAHVIALESNTEPVPVPRKAET--QSHRIP 97 (117)
Q Consensus 60 ~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a--~s~~~~ 97 (117)
++|+++||+|||+++..+.++|+++++++.++ .++..+
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l 134 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALV 134 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 99999999999999999999999999887654 445443
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.45 E-value=2.2e-13 Score=103.83 Aligned_cols=87 Identities=9% Similarity=-0.137 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825 14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s 93 (117)
++.++++|+..++...|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++++++.++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred eehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhHh
Q 039825 94 HRIPLVA 100 (117)
Q Consensus 94 ~~~~l~~ 100 (117)
++.+++.
T Consensus 82 ~~~~~~~ 88 (399)
T TIGR00893 82 YVSLYIL 88 (399)
T ss_pred HHHHHHH
Confidence 8776554
No 31
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.45 E-value=9.3e-13 Score=102.02 Aligned_cols=98 Identities=15% Similarity=0.026 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++++.+..+....++.........+.+|.+++++|.++.|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 2 SAKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 45555566666667788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++...+++++|++...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (385)
T TIGR00710 82 LSSLGLALSNNIETLLVL 99 (385)
T ss_pred HHHHHHHHHccHHHHHHH
Confidence 999999999988876553
No 32
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.44 E-value=6.3e-13 Score=106.92 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh--------CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAAL--------HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI 74 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~--------~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl 74 (117)
..+++.++++++.+.+++|..+++...|.++++| +++++|.|++.+++.++..++++++|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4577888888999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 039825 75 ALESNTEPVPVPRKAET 91 (117)
Q Consensus 75 ~~~~~~~sl~t~l~a~a 91 (117)
..+..++++++++++++
T Consensus 89 ~~~~~l~~i~~~~~~~~ 105 (479)
T PRK10077 89 KIAAVLFFISALGSAWP 105 (479)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888874
No 33
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.44 E-value=9.2e-13 Score=101.84 Aligned_cols=93 Identities=9% Similarity=0.006 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP 86 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~ 86 (117)
.+.++++.++.+.+...+++++|. +++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345777888889999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-ccchhhHh
Q 039825 87 RKAETQ-SHRIPLVA 100 (117)
Q Consensus 87 l~a~a~-s~~~~l~~ 100 (117)
++++++ |++.+++.
T Consensus 83 ~~~~~~~~~~~~~~~ 97 (366)
T TIGR00886 83 WAGLAVQSYSVLLLL 97 (366)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999998 88775543
No 34
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.44 E-value=1e-12 Score=107.23 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.+|.++..+.++...++.|+..++..+|.+.+++|++.++.|++.+.+.++..+++|++|+++||+|||+++..+.++++
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 36889899999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhh
Q 039825 83 VPVPRKAETQSHRIPL 98 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l 98 (117)
++++++++++|++.+.
T Consensus 96 ~~~~~~~~~~~~~~l~ 111 (455)
T TIGR00892 96 LGMILASFSSNVIELY 111 (455)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 9999999998888764
No 35
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.44 E-value=7.5e-13 Score=107.35 Aligned_cols=89 Identities=4% Similarity=-0.281 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++|.++..+.+.+...++|+..++...|.+.++ |+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 456677778889999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 039825 83 VPVPRKAETQ 92 (117)
Q Consensus 83 l~t~l~a~a~ 92 (117)
++++++++++
T Consensus 105 i~~~~~~~~~ 114 (452)
T PRK11273 105 AVMLFMGFVP 114 (452)
T ss_pred HHHHHHHhhh
Confidence 9999988864
No 36
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.43 E-value=1.9e-12 Score=103.61 Aligned_cols=97 Identities=9% Similarity=-0.076 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
.|+.+..+....+....+.......+|++.+|+|++++|.|+..+++.+++.+++|++|+++||+|||+++..+..++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 35554555555455555665666678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchhhHh
Q 039825 84 PVPRKAETQSHRIPLVA 100 (117)
Q Consensus 84 ~t~l~a~a~s~~~~l~~ 100 (117)
+++++++++|++.+++.
T Consensus 98 ~~~~~~~~~~~~~l~~~ 114 (394)
T PRK10213 98 SCLLVSFANSFSLLLIG 114 (394)
T ss_pred HHHHHHHHChHHHHHHH
Confidence 99999999998886654
No 37
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.43 E-value=1.5e-12 Score=103.32 Aligned_cols=96 Identities=9% Similarity=-0.193 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
+...+.+.+..+++.++..++.+.+|.+++++|+|+.+.|+..+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 91 (406)
T PRK15402 12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT 91 (406)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34445557777788888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhHh
Q 039825 85 VPRKAETQSHRIPLVA 100 (117)
Q Consensus 85 t~l~a~a~s~~~~l~~ 100 (117)
+..+++++|++.+++.
T Consensus 92 ~~~~~~~~~~~~l~~~ 107 (406)
T PRK15402 92 CLAILLAQSIEQFTLL 107 (406)
T ss_pred HHHHHHHccHHHHHHH
Confidence 9999999988775543
No 38
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.42 E-value=2.1e-12 Score=98.26 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
+.++.+++.++..++...+| .+.+++|.++.|.|++.+++.+++.++++++|+++||+|||+++..+..+++++...++
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 35778889999999999999 99999999999999999999999999999999999999999999999999999977777
Q ss_pred hccccchhhH
Q 039825 90 ETQSHRIPLV 99 (117)
Q Consensus 90 ~a~s~~~~l~ 99 (117)
+++|++.+++
T Consensus 81 ~~~~~~~~~~ 90 (352)
T PF07690_consen 81 FASNFWLLLI 90 (352)
T ss_dssp HHCCHHHHHH
T ss_pred hhhhHHHHhh
Confidence 8777764433
No 39
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.40 E-value=2.9e-12 Score=103.27 Aligned_cols=92 Identities=13% Similarity=-0.081 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
..+.+..++..++..+..+.+|.+.+++|.+.++.++..+++.++++++++++|+++||+|||+++..+.++|++++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34455567788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhHh
Q 039825 89 AETQSHRIPLVA 100 (117)
Q Consensus 89 a~a~s~~~~l~~ 100 (117)
++++|++.+++.
T Consensus 99 ~~a~~~~~l~~~ 110 (413)
T PRK15403 99 LFTTSMTQFLIA 110 (413)
T ss_pred HHcCCHHHHHHH
Confidence 999998776553
No 40
>PRK11043 putative transporter; Provisional
Probab=99.40 E-value=4.8e-12 Score=100.07 Aligned_cols=97 Identities=11% Similarity=-0.054 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.+++.++++.+...+..+-..++.+.+|.+++|+|++++|.|++.+++.+++.++++++|+++||+|||+++..+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 82 (401)
T PRK11043 3 PSKGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA 82 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH
Confidence 34555566655556666667777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhH
Q 039825 83 VPVPRKAETQSHRIPLV 99 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~ 99 (117)
++..++++++|++.+++
T Consensus 83 ~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 83 LGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 99999999998877654
No 41
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.39 E-value=5.5e-12 Score=103.65 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=84.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-----CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAAL-----HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIAL 76 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~-----~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~ 76 (117)
+.+++++.+++++.+++++|.+.++.+.|.+++++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45778889999999999999999999999998863 4556688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 039825 77 ESNTEPVPVPRKAETQS 93 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a~s 93 (117)
+.+++++++++++++++
T Consensus 92 ~~~~~~v~~~~~~~~~~ 108 (502)
T TIGR00887 92 ELIIMIIATVASGLSPG 108 (502)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 99999999999999876
No 42
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=3.2e-12 Score=100.82 Aligned_cols=87 Identities=8% Similarity=-0.036 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
++-+..+.+..++..++..+..+++|. +++++|+|+++.|++.+++.+++.+++|++|+++||+|||+++..+.+++++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 444566778888899999998888886 7899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhc
Q 039825 84 PVPRKAET 91 (117)
Q Consensus 84 ~t~l~a~a 91 (117)
++..++++
T Consensus 94 ~~~~~~~~ 101 (399)
T PRK05122 94 SGLLYLLA 101 (399)
T ss_pred HHHHHHHh
Confidence 77665553
No 43
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.37 E-value=8.2e-12 Score=104.19 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
||.+.+..++..+...+..+.+++.+.+.+ |+|+|++|.|++.+++.++++++..+.|++.||+|.|+++..+.+++++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 489999999999999999999999999877 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-----cccchhhHh
Q 039825 84 PVPRKAET-----QSHRIPLVA 100 (117)
Q Consensus 84 ~t~l~a~a-----~s~~~~l~~ 100 (117)
.+++++++ +|++.+++.
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli~ 134 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIVI 134 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHHH
Confidence 99999987 788776653
No 44
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.35 E-value=1.2e-11 Score=100.19 Aligned_cols=92 Identities=10% Similarity=-0.173 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l 87 (117)
++++.+..++-+++..+.++++|.+++++|+|++|.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45666777777888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh---ccccchhhH
Q 039825 88 KAE---TQSHRIPLV 99 (117)
Q Consensus 88 ~a~---a~s~~~~l~ 99 (117)
++. ++|++.+++
T Consensus 85 ~~~~~~~~~~~~~l~ 99 (410)
T TIGR00885 85 FWPAAEIMNYTLFLV 99 (410)
T ss_pred HHHHHhhccHHHHHH
Confidence 654 356766543
No 45
>PRK12382 putative transporter; Provisional
Probab=99.34 E-value=8.5e-12 Score=98.39 Aligned_cols=82 Identities=11% Similarity=-0.080 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
++.++.+.++.+++.+...+..+.+|. +++|+|+|.+|.|++.+++.+++.+++|++|+++||+|||+++..+.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL 93 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence 345667777888888887777777775 6889999999999999999999999999999999999999999998888776
Q ss_pred HHH
Q 039825 84 PVP 86 (117)
Q Consensus 84 ~t~ 86 (117)
+++
T Consensus 94 ~~~ 96 (392)
T PRK12382 94 AGL 96 (392)
T ss_pred HHH
Confidence 554
No 46
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.32 E-value=9.9e-12 Score=99.60 Aligned_cols=83 Identities=11% Similarity=-0.046 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 17 MERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 17 ~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
.|..-...+++++|.+++|+|+|++|.|++.+++.+++.++++++|+++||+|||+++..++.....+......++|++.
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 35566678899999999999999999999999999999999999999999999999877655544443332233367766
Q ss_pred hhH
Q 039825 97 PLV 99 (117)
Q Consensus 97 ~l~ 99 (117)
+++
T Consensus 82 l~~ 84 (368)
T TIGR00903 82 LLA 84 (368)
T ss_pred HHH
Confidence 544
No 47
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.32 E-value=1.2e-11 Score=94.25 Aligned_cols=89 Identities=13% Similarity=-0.048 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 11 VNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
+.++.+++.+...+....+|...++++.++.|.|++.+++.+++.+++|++|+++||+|||+++..+..+++++..+.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 55777888888899999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cc-----ccchhhH
Q 039825 91 TQ-----SHRIPLV 99 (117)
Q Consensus 91 a~-----s~~~~l~ 99 (117)
+. |++.+++
T Consensus 84 ~~~~~~~~~~~~~~ 97 (365)
T TIGR00900 84 VALLGGLNIWQVYV 97 (365)
T ss_pred HHHcCCCcHHHHHH
Confidence 77 7666543
No 48
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.31 E-value=1.2e-11 Score=97.01 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC--------hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTD--------PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES 78 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls--------~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~ 78 (117)
..+++.++.+++.+|...++..++.++.+++.+ ..|.|++.+++.+++.++++++|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 108 (481)
T TIGR00879 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA 108 (481)
T ss_pred HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence 344556677889999999999999999999888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 039825 79 NTEPVPVPRKAETQSH 94 (117)
Q Consensus 79 ~~~sl~t~l~a~a~s~ 94 (117)
+++++++.+++++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~ 124 (481)
T TIGR00879 109 LLFVIGAILMGLAAFA 124 (481)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999765443
No 49
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.31 E-value=1.8e-11 Score=103.13 Aligned_cols=92 Identities=8% Similarity=-0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG-LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q-~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
.++.+|..|.+-|. |..++++.|++.+|+|+|++| .|.+.++++.+|++++.+.|+++||+|-|+++..+.+.|++.
T Consensus 28 ~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~ 105 (511)
T TIGR00806 28 LVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV 105 (511)
T ss_pred HHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34445566655554 889999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhH
Q 039825 85 VPRKAETQSHRIPLV 99 (117)
Q Consensus 85 t~l~a~a~s~~~~l~ 99 (117)
++++++++|+..+.+
T Consensus 106 t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 106 WLLLLLGTSVWHMQL 120 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776554
No 50
>PRK10054 putative transporter; Provisional
Probab=99.28 E-value=4.8e-11 Score=95.56 Aligned_cols=96 Identities=4% Similarity=-0.109 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSL-LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~i-l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
+++.+.++.++.++..+-... .+.+-+.+++++|+|+.|.|++.+.+.+++.+++|++|+++||+|||+++..+.....
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~ 84 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA 84 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 344445555566666666555 4555667788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhH
Q 039825 83 VPVPRKAETQSHRIPLV 99 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~ 99 (117)
++.++.++++|++..++
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (395)
T PRK10054 85 SGFIAIPLVNNVTLVVL 101 (395)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99999999988876544
No 51
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.27 E-value=6e-11 Score=93.56 Aligned_cols=89 Identities=9% Similarity=-0.049 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 11 VNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
..+..+.+..-..+....+|.+++++|.+..+.|++.+.+.+++.+++|+.|+++||+|||+++..+..++.++...+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555557899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhH
Q 039825 91 TQSHRIPLV 99 (117)
Q Consensus 91 a~s~~~~l~ 99 (117)
++|++.+++
T Consensus 88 ~~~~~~~~~ 96 (392)
T PRK10473 88 AETSSLFLA 96 (392)
T ss_pred hCcHHHHHH
Confidence 888765443
No 52
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.27 E-value=2.5e-11 Score=97.15 Aligned_cols=86 Identities=9% Similarity=-0.044 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
..+.++.+++.+...++....+.+.+|+|.++.+.|++.+++.+.+.+++|++|+++||+|||+++..+..+++++++++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 45677788888855556666777889999999999999999999999999999999999999999999999999999888
Q ss_pred Hhcccc
Q 039825 89 AETQSH 94 (117)
Q Consensus 89 a~a~s~ 94 (117)
+++.+.
T Consensus 86 ~~~~~~ 91 (393)
T PRK11195 86 LFGIHP 91 (393)
T ss_pred HHHHHH
Confidence 776654
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.27 E-value=4.4e-11 Score=90.15 Aligned_cols=92 Identities=20% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
..+.++.+.+.++........|.+.+++|.++.|.|++.+...+++.+++|++|+++||+|||+.+..+..+..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhHh
Q 039825 89 AETQSHRIPLVA 100 (117)
Q Consensus 89 a~a~s~~~~l~~ 100 (117)
++++|+...++.
T Consensus 82 ~~~~~~~~~~~~ 93 (352)
T cd06174 82 AFASSLWLLLVG 93 (352)
T ss_pred HHhccHHHHHHH
Confidence 988787765543
No 54
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.26 E-value=9.8e-11 Score=91.92 Aligned_cols=95 Identities=11% Similarity=-0.024 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIG-----LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESN 79 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q-----~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~ 79 (117)
++....+.++.++..+...+..+.+|.+.+++|++..| .|++.+++.+++.+++|++|+++||+|||+++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 44556667788888888888888999999999999766 4889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhH
Q 039825 80 TEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 80 ~~sl~t~l~a~a~s~~~~l~ 99 (117)
.++++..++++++|++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~ 112 (408)
T PRK09874 93 GMGIVMVLMGLAQNIWQFLI 112 (408)
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 99999999999888876554
No 55
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.23 E-value=3.5e-11 Score=97.08 Aligned_cols=88 Identities=5% Similarity=-0.273 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.||..++.+.+++...+.|+..+....|.+++ +|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 46788888889999999999999999998886 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 039825 83 VPVPRKAET 91 (117)
Q Consensus 83 l~t~l~a~a 91 (117)
+++++++++
T Consensus 103 ~~~~~~~~~ 111 (438)
T TIGR00712 103 AVMLLMGFV 111 (438)
T ss_pred HHHHHHhcc
Confidence 999888775
No 56
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.22 E-value=1e-10 Score=90.52 Aligned_cols=87 Identities=11% Similarity=-0.030 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHHHHHHHHHHh
Q 039825 13 LAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA-LESNTEPVPVPRKAE 90 (117)
Q Consensus 13 l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~-~~~~~~sl~t~l~a~ 90 (117)
+.+++..+...+..+.+|. +++++|+|+++.|++.+++.+...+++|++|+++||+||||.+. .+..+..++..++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4466677777777776665 78899999999999999999999999999999999999988655 566677788888999
Q ss_pred ccccchhhH
Q 039825 91 TQSHRIPLV 99 (117)
Q Consensus 91 a~s~~~~l~ 99 (117)
++|++.+++
T Consensus 84 ~~~~~~l~~ 92 (375)
T TIGR00899 84 NRNYFLLLV 92 (375)
T ss_pred cchHHHHHH
Confidence 999887554
No 57
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.19 E-value=2.6e-10 Score=90.93 Aligned_cols=85 Identities=11% Similarity=-0.089 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
-||.+....++.++...-.......++++.+|+|++++|.|++.+.+.+++.+++|++|+++||+|||+++..+..++++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 35666666777666655555444556677789999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 039825 84 PVPRK 88 (117)
Q Consensus 84 ~t~l~ 88 (117)
+++++
T Consensus 91 ~~~~~ 95 (402)
T TIGR00897 91 GHAAF 95 (402)
T ss_pred HHHHH
Confidence 88765
No 58
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.18 E-value=9.4e-11 Score=97.22 Aligned_cols=99 Identities=9% Similarity=-0.183 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+.|+++++.+.+||..-|+-|...+.+.|.++++.++|.+|+|.+.+.+.++|.++-.+.|.++||.|-|+.+.+++++-
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 35777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhHh
Q 039825 82 PVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~a~s~~~~l~~ 100 (117)
++..++.++++|...+.+.
T Consensus 105 ai~nil~Gfs~s~~~~~~l 123 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVL 123 (448)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 9999999999877765554
No 59
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.16 E-value=5.6e-10 Score=90.41 Aligned_cols=88 Identities=8% Similarity=-0.084 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch-HHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLL-PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-AHVIALESNTEPVPVPRK 88 (117)
Q Consensus 11 l~l~~~~d~~D~~il-~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-r~vl~~~~~~~sl~t~l~ 88 (117)
+++-.++++.-..+. +++.+.+++++|++..|.|++.+++.+++.+++|++|+++||+|| |+++..+.+.+++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 444555566655644 788888899999999999999999999999999999999999965 889999999999999999
Q ss_pred Hhccccchhh
Q 039825 89 AETQSHRIPL 98 (117)
Q Consensus 89 a~a~s~~~~l 98 (117)
++++|++.++
T Consensus 87 ~~~~~~~~~~ 96 (418)
T TIGR00889 87 AQVTTPAGMF 96 (418)
T ss_pred HHhcCHHHHH
Confidence 9988876543
No 60
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.14 E-value=2e-10 Score=89.52 Aligned_cols=78 Identities=8% Similarity=-0.123 Sum_probs=71.5
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
.+..+.+|.+.+++|+|+.|.|++.+++.+++.++++++|+++||+|||+++..+..+.+++...+++++|++..++.
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 455678999999999999999999999999999999999999999999999999999999999999999888775544
No 61
>TIGR00898 2A0119 cation transport protein.
Probab=99.12 E-value=4.4e-11 Score=97.36 Aligned_cols=74 Identities=14% Similarity=-0.042 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCC---hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825 27 GVYKEVGAALHTD---PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 27 ~~lp~i~~~~~ls---~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
...+.+++||+++ +.+.|++.+++.+++.++++++|+++||+|||+++..+.++++++++++++++|++.+++.
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 5678999999999 9999999999999999999999999999999999999999999999999999999886654
No 62
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.12 E-value=9.1e-10 Score=90.93 Aligned_cols=95 Identities=7% Similarity=-0.130 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH--hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEV-GAA--LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALES 78 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i-~~~--~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~ 78 (117)
++.+.+..+.++.++|.+-...+...+|.. .++ +|++..|.|.+.+.+.+++.++++++|+++|| +|||+++..+.
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~ 86 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG 86 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence 445666777788888888877655555544 555 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhccccchh
Q 039825 79 NTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 79 ~~~sl~t~l~a~a~s~~~~ 97 (117)
.+++++.++.++++++..+
T Consensus 87 ~~~~~g~~~~~~~~~~~~~ 105 (475)
T TIGR00924 87 IVLMLGHFMLAMSIYPDLI 105 (475)
T ss_pred HHHHHHHHHHHhcccHhHH
Confidence 9999999999998776554
No 63
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.11 E-value=2.4e-10 Score=89.05 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=66.5
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
..+++++|.+++|+|++++|.|++.+.+.+++.+++++.|+++||+|||+++..+.....++.+.+ .+++.+.+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 466788999999999999999999999999999999999999999999999999998888887777 55666654
No 64
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.11 E-value=4.4e-10 Score=86.37 Aligned_cols=81 Identities=10% Similarity=-0.112 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhC--CChhhhHHHHHH-----HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825 15 GIMERADVSLLPGVYKEVGAALH--TDPIGLDSLTLF-----RSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 15 ~~~d~~D~~il~~~lp~i~~~~~--ls~~q~G~l~s~-----~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l 87 (117)
.++|++|+..++...+.+.++.. .++++.|.+.+. ..++..++++++|+++||+|||+++..+.+++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999854 567777776653 23333468999999999999999999999999999999
Q ss_pred HHhccccc
Q 039825 88 KAETQSHR 95 (117)
Q Consensus 88 ~a~a~s~~ 95 (117)
+++++|+.
T Consensus 82 ~~~~~~~~ 89 (394)
T TIGR00883 82 IGLLPSYA 89 (394)
T ss_pred HhhCCChh
Confidence 99999876
No 65
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.11 E-value=5.3e-11 Score=102.00 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
+..++.+.++.+.+.++...++.+++.++++|+++.+|.|++.+.+.++++++++++|+++||+|||+.+.++.++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence 33446666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 039825 85 VPRKAETQ 92 (117)
Q Consensus 85 t~l~a~a~ 92 (117)
++++++++
T Consensus 112 ~ll~alph 119 (633)
T TIGR00805 112 SFLLSLPH 119 (633)
T ss_pred HHHHhChH
Confidence 99999864
No 66
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.10 E-value=1.2e-09 Score=90.79 Aligned_cols=93 Identities=8% Similarity=-0.109 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNT 80 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~ 80 (117)
++++.++.+.+.-+.|.+-.. +.+.+...+++++|+++++.+++.+++.....+..+++|+++|| +||||++..+..+
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 456667777777777776666 44566778899999999999999999998899999999999999 9999999999999
Q ss_pred HHHHHHHHHhccccc
Q 039825 81 EPVPVPRKAETQSHR 95 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~ 95 (117)
++++++.++++++..
T Consensus 91 ~~~g~~~~~~~~~~~ 105 (489)
T PRK10207 91 LAIGYFMTGMSLLKP 105 (489)
T ss_pred HHHHHHHHHHhccch
Confidence 999999999987633
No 67
>PTZ00207 hypothetical protein; Provisional
Probab=99.07 E-value=2.3e-09 Score=91.97 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
+||.++.......... ......+...|++++++|+|.+|++++.++. ..+..++++.|+++||+|||+++.++.++|+
T Consensus 25 ~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5666555444333322 3344677888999999999999999999874 4556788889999999999999999999999
Q ss_pred HHHHHHHhc
Q 039825 83 VPVPRKAET 91 (117)
Q Consensus 83 l~t~l~a~a 91 (117)
+++++++++
T Consensus 103 iG~ll~ala 111 (591)
T PTZ00207 103 LGTLLFALT 111 (591)
T ss_pred HHHHHHHHH
Confidence 999999997
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.06 E-value=2.6e-09 Score=85.73 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=69.5
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
.+++.+-+.+++++|+|..+.|++.+...+.+.+.++++|+++||+|||+++..+..+++++.+++++++|++.+.+
T Consensus 28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (400)
T PRK11646 28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL 104 (400)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45566666788999999999999999999999999999999999999999999999999999999999988876544
No 69
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.06 E-value=2.3e-09 Score=85.68 Aligned_cols=81 Identities=9% Similarity=-0.192 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
++.++.+.+..+++.+-.. ..+.+-..+++++|+|+.|.|.+.+++.+++.+++|++|+++||+|||+++..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV 88 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3444555566666766554 566666677888999999999999999999999999999999999999999887766665
Q ss_pred HH
Q 039825 84 PV 85 (117)
Q Consensus 84 ~t 85 (117)
..
T Consensus 89 ~~ 90 (420)
T PRK09528 89 LF 90 (420)
T ss_pred HH
Confidence 54
No 70
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=99.01 E-value=4.1e-09 Score=70.01 Aligned_cols=80 Identities=11% Similarity=-0.141 Sum_probs=75.1
Q ss_pred HHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 19 RADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 19 ~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
++-|....+++|.+++|.++|.+|.|++.+++.++|.+|++...++.+|.++++++..+++.-.+.+++|+++++...+.
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 46688899999999999999999999999999999999999999999999999999999999999999999998887654
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.00 E-value=9.6e-10 Score=87.66 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 10 LVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 10 ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
.+.++.+++.+...+....+|.+.++++.++.|.|++.+.+.+++.++++++|+++||+|||+++..+..+++++....+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 44555677888888889999999999999999999999999999999999999999999999999988888777765544
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.95 E-value=1e-08 Score=81.54 Aligned_cols=90 Identities=7% Similarity=-0.070 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH-HHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGV-YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI-ALESNTEPVPVP 86 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~-lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl-~~~~~~~sl~t~ 86 (117)
....++.+++.+-.....+. -+.+++|+|+++++.|++.+...+...+.+++.|.++||+||||.+ ..+..++++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 34455566777776655554 4457899999999999998776665555555555559999999874 566777888888
Q ss_pred HHHhccccchhh
Q 039825 87 RKAETQSHRIPL 98 (117)
Q Consensus 87 l~a~a~s~~~~l 98 (117)
+.+++++++.++
T Consensus 98 ~~~~~~~~~~l~ 109 (393)
T PRK15011 98 LFAWNRNYFVLL 109 (393)
T ss_pred HHHHhhHHHHHH
Confidence 889998887753
No 73
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.94 E-value=1.8e-08 Score=79.88 Aligned_cols=78 Identities=8% Similarity=-0.144 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
++.+...+++.+.-...+.+.+| .+++++|+++.|.|++.+++.+++.+++|++|+++||+|||+++..+...+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 45666677777777666655554 5577899999999999999999999999999999999999999988776665543
No 74
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.90 E-value=2.2e-08 Score=79.45 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH----HHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH----VIALESNTEPVP 84 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~----vl~~~~~~~sl~ 84 (117)
..+.+.++..++-..+..+.+|.+.+|+|+|.+|.|++.+++.++..+++|++|.++||+||+. ++..+..++.+
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 3466777888887788888899999999999999999999999999999999999999999843 33333333333
Q ss_pred HHHHHhccccchhhHh
Q 039825 85 VPRKAETQSHRIPLVA 100 (117)
Q Consensus 85 t~l~a~a~s~~~~l~~ 100 (117)
..+++++|++.+++.
T Consensus 86 -~~~~~~~~~~~l~~~ 100 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIA 100 (382)
T ss_pred -HHHHhhhhHHHHHHH
Confidence 244566777765443
No 75
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.85 E-value=2.8e-08 Score=87.97 Aligned_cols=88 Identities=8% Similarity=-0.148 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhh--hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH--
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIG--LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR-- 87 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q--~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l-- 87 (117)
....+.+..|......+.+.+..+++.+.++ .|++.+++.+++.++++++|+++||+|||+++..+.+++.+.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~ 95 (1146)
T PRK08633 16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIV 95 (1146)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3333446678788888888888888876554 789999999999999999999999999999999988766555544
Q ss_pred -HHhccccchhhH
Q 039825 88 -KAETQSHRIPLV 99 (117)
Q Consensus 88 -~a~a~s~~~~l~ 99 (117)
+.++++++.+++
T Consensus 96 ~~~~~~~~~~l~~ 108 (1146)
T PRK08633 96 LAYYLGWFWLAFA 108 (1146)
T ss_pred HHHHHccHHHHHH
Confidence 444466665444
No 76
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.81 E-value=3.5e-08 Score=81.63 Aligned_cols=101 Identities=16% Similarity=-0.064 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
+-+..++++..-.++=++.......++|.+++.|++|..|.+++..++..+|++++.+.|++.+|+|+|+-+++|+.++.
T Consensus 10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 10 SVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred CceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455666666667777777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhccccchhhHhhcC
Q 039825 83 VPVPRK---AETQSHRIPLVALFP 103 (117)
Q Consensus 83 l~t~l~---a~a~s~~~~l~~~~~ 103 (117)
++..+. +-..+|..+++.+|+
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFi 113 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFI 113 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHH
Confidence 999887 355777778887775
No 77
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.81 E-value=3e-08 Score=83.56 Aligned_cols=94 Identities=11% Similarity=-0.055 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-C-------CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAAL-H-------TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI 74 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~-~-------ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl 74 (117)
++-+.+++.+.|.+.|.+|..+++.+.|.+.... | .+..-.+.+..+.+++...||.++|+++||+|||+++
T Consensus 38 ~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY 117 (538)
T KOG0252|consen 38 KHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY 117 (538)
T ss_pred HHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 4556778889999999999999999999998874 2 3345677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccch
Q 039825 75 ALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 75 ~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
...+++--++|++|+++.+...
T Consensus 118 G~~liImIi~t~~~~~s~~~~~ 139 (538)
T KOG0252|consen 118 GKELIIMIICSALSGLSVGTTS 139 (538)
T ss_pred hHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999998755544
No 78
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.76 E-value=1.7e-07 Score=77.94 Aligned_cols=88 Identities=14% Similarity=-0.066 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLL-PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPV 83 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il-~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl 83 (117)
+.+..+.+..+.+.+-...+ +.+...+.+++|+++++.+++.+.+........+++|+++|| +|||+++..+.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 33455556666666665444 445666679999999999999988877767777899999999 5999999999999999
Q ss_pred HHHHHHhccc
Q 039825 84 PVPRKAETQS 93 (117)
Q Consensus 84 ~t~l~a~a~s 93 (117)
+..+++++++
T Consensus 101 g~~l~~~~~~ 110 (500)
T PRK09584 101 GYALVAWSGH 110 (500)
T ss_pred HHHHHHHhcc
Confidence 9999988743
No 79
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.76 E-value=1.5e-07 Score=71.89 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcc
Q 039825 13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQ 92 (117)
Q Consensus 13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~ 92 (117)
+..+....-........++..+++|.++.+.+.+.+.+.++..++++++|+++||+|||+.+..+..+..++..+..+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 212 LSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP 291 (377)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 33333333334444455667788999999999999999999999999999999999999999999888888887777765
Q ss_pred cc
Q 039825 93 SH 94 (117)
Q Consensus 93 s~ 94 (117)
+.
T Consensus 292 ~~ 293 (377)
T TIGR00890 292 ML 293 (377)
T ss_pred cc
Confidence 43
No 80
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.75 E-value=1.5e-07 Score=61.03 Aligned_cols=71 Identities=18% Similarity=0.103 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
..-+++-+.-.+.+-+-+|...++.|+|+.|.|.+.++..+...+++|++|+++||+||++.+.....+++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~~ 76 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFMA 76 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHh
Confidence 33445555555555555666677899999999999999999999999999999999999999888776543
No 81
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.75 E-value=1.3e-07 Score=78.25 Aligned_cols=98 Identities=12% Similarity=-0.081 Sum_probs=91.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
..+++.+++-.+...+..+-..+.+++.+.+++|+|+|+.|.+++.++..+.-++.-.+.|.+.||||-|++...+.++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc---hhhH
Q 039825 82 PVPVPRKAETQSHR---IPLV 99 (117)
Q Consensus 82 sl~t~l~a~a~s~~---~~l~ 99 (117)
.+.++..+++.++. ++++
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~ 110 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLV 110 (417)
T ss_pred HHHHHHHHHHccCCchHHHHH
Confidence 99999999997777 5444
No 82
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=4e-08 Score=82.86 Aligned_cols=96 Identities=8% Similarity=-0.038 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
|.+++..++.+.+.+-=....+.+.++++++++-+..|.+|+.++....+.+.+|+.+.+.||||.|.+.+.|.++.+++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g 124 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG 124 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 55566666777776666677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhHh
Q 039825 85 VPRKAETQSHRIPLVA 100 (117)
Q Consensus 85 t~l~a~a~s~~~~l~~ 100 (117)
.++++|++|.++++++
T Consensus 125 ~~lssF~~~i~~l~lt 140 (509)
T KOG2504|consen 125 LLLSSFATSLWQLYLT 140 (509)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999999998775
No 83
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.70 E-value=2.7e-08 Score=81.99 Aligned_cols=68 Identities=7% Similarity=-0.224 Sum_probs=62.8
Q ss_pred HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825 33 GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 33 ~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
.+..+.+.....+..+++.+|..+|+.++|+++||+|||+++..++++..++..++++++|++.+.++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~ 177 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIF 177 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 35567788888999999999999999999999999999999999999999999999999999997765
No 84
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.70 E-value=3.6e-07 Score=77.00 Aligned_cols=87 Identities=10% Similarity=-0.080 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVY-KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTEP 82 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~l-p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~s 82 (117)
++.+..++..-+.+.+-...+...+ ..+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++..+..+..
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 4444555555566666555454444 455778999999999999999999999999999999999 99999999998888
Q ss_pred HHHHHHHhc
Q 039825 83 VPVPRKAET 91 (117)
Q Consensus 83 l~t~l~a~a 91 (117)
++.+++++.
T Consensus 88 lg~lll~~~ 96 (493)
T PRK15462 88 IGHVVLGAS 96 (493)
T ss_pred HHHHHHHHh
Confidence 887666653
No 85
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=78.84 Aligned_cols=93 Identities=16% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHhHHHHHHHHHh-----CCCh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825 7 TMALVNLAGIMERAD--VSLLPGVYKEVGAAL-----HTDP--IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE 77 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D--~~il~~~lp~i~~~~-----~ls~--~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~ 77 (117)
......++.+.-+.| ....+.+...++++. ..+. ++.+++.++..++.+++++++|+++|++|||+.+.++
T Consensus 46 ~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~ 125 (513)
T KOG0254|consen 46 LALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA 125 (513)
T ss_pred HHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334445666666666 556667777777743 2222 3559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhH
Q 039825 78 SNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 78 ~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
.+++.++.+++++|+|++.+.+
T Consensus 126 ~~~~~iG~ii~~~a~~~~~l~~ 147 (513)
T KOG0254|consen 126 VVLFLIGAIIIALAPSWYQLIV 147 (513)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999888665
No 86
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.68 E-value=3.9e-09 Score=84.54 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH--HHhCCCh---------hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYKEVG--AALHTDP---------IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESN 79 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~--~~~~ls~---------~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~ 79 (117)
..++.+.+++|...++.+.+... .++..+. .+.+++.++..++..+|++++|+++||+|||+.+..+..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 45666999999999988777766 2333332 346889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---ccchhhHh
Q 039825 80 TEPVPVPRKAETQ---SHRIPLVA 100 (117)
Q Consensus 80 ~~sl~t~l~a~a~---s~~~~l~~ 100 (117)
+..++++++++++ |++.+.+.
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~ 108 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIG 108 (451)
T ss_pred cccccccccccccccccccccccc
Confidence 9999999999999 77765543
No 87
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.66 E-value=4.7e-07 Score=72.04 Aligned_cols=68 Identities=9% Similarity=-0.047 Sum_probs=52.7
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
-..+++++|+++.+.|.+.+....+..++.+++|+++||+|||+.+..+.....+......++++...
T Consensus 240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T PRK15011 240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI 307 (393)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33567889999999999988887888889999999999999999888776655554444445555443
No 88
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.65 E-value=1.8e-07 Score=72.76 Aligned_cols=70 Identities=10% Similarity=-0.107 Sum_probs=58.2
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHHH-HHHHHHHHHHHHHHHHhcccc
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAHV-IALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~v-l~~~~~~~sl~t~l~a~a~s~ 94 (117)
.+++.++|.+.+|+|+|.+|.|++.+. .+...+ ++++|.++||+ ||||. +..+....++++.+++++++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 467788999999999999999999766 455554 99999999998 89987 567888888888888887543
No 89
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.65 E-value=2.3e-07 Score=79.91 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
++...-.++-....+.+++.|.+|+|- ..+..|+.++..++.+++.|+.|+|+|.||||++++.+.++.-++++.++-|
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 333333444444556778999999995 4789999999999999999999999999999999999999999999999999
Q ss_pred cccchhh
Q 039825 92 QSHRIPL 98 (117)
Q Consensus 92 ~s~~~~l 98 (117)
+|...+.
T Consensus 129 ~~~~~~i 135 (599)
T PF06609_consen 129 QNMNTFI 135 (599)
T ss_pred CcHHHHH
Confidence 8877643
No 90
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.63 E-value=9e-07 Score=66.64 Aligned_cols=89 Identities=11% Similarity=-0.102 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH-HHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAAL-HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH-VIALESNTEPVPVP 86 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~-~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~-vl~~~~~~~sl~t~ 86 (117)
....+..++............|.+.++. |.++.+.|.+.+...++..++++++|++.||+|||+ ++..+..+..++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444455555666666666677776665 999999999999999999999999999999999999 99999999999999
Q ss_pred HHHhccccchh
Q 039825 87 RKAETQSHRIP 97 (117)
Q Consensus 87 l~a~a~s~~~~ 97 (117)
..++.++.+..
T Consensus 258 ~~~~~~~~~~~ 268 (352)
T cd06174 258 LLALAPSLALL 268 (352)
T ss_pred HHHHhccHHHH
Confidence 88887775443
No 91
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.61 E-value=1.7e-07 Score=77.97 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
-+|........+|+-|.+.....+.+.|.+...|+.+..|..++...-+.++.+++..||..+|++|||+.+.....+-.
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~ 154 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG 154 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchhhHh
Q 039825 83 VPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 83 l~t~l~a~a~s~~~~l~~ 100 (117)
++....+.++|+..+.++
T Consensus 155 v~~~is~~spnf~~L~~f 172 (528)
T KOG0253|consen 155 VFGVISGASPNFASLCVF 172 (528)
T ss_pred HHHHhhcCCCCeehhhHH
Confidence 999999999999886553
No 92
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.60 E-value=7.9e-07 Score=72.48 Aligned_cols=77 Identities=10% Similarity=-0.149 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
.++.+.+..++.+.....+..-.| .+++++|++..|.++..+...++..++++++|+++||+|||+.+........+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALI 336 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 355666666666666655555566 56678999999999999999999999999999999999999877655444443
No 93
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.59 E-value=4.1e-07 Score=81.29 Aligned_cols=92 Identities=10% Similarity=-0.110 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH---HHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVY-KEVGAALHTDPIG-LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA---LESNTEPV 83 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~l-p~i~~~~~ls~~q-~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~---~~~~~~sl 83 (117)
+...++.+-|++++..+..+. ..+..+.+.+... .++..+++.+.+++++|++|+++||||||+++. .+.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~ 97 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA 97 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 333555566677777665544 4566666555544 677778999999999999999999999999753 23334444
Q ss_pred HHHHHHhccccchhhHh
Q 039825 84 PVPRKAETQSHRIPLVA 100 (117)
Q Consensus 84 ~t~l~a~a~s~~~~l~~ 100 (117)
....+..++|++.+++.
T Consensus 98 ~~~~~~~~~s~~~l~~~ 114 (1140)
T PRK06814 98 LAIYGFHLNSVPLLFAA 114 (1140)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 44444444677765554
No 94
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.59 E-value=6.7e-07 Score=70.81 Aligned_cols=82 Identities=10% Similarity=-0.134 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH----HHHHHHHHHHHHHHHHHHh
Q 039825 15 GIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA----HVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 15 ~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr----~vl~~~~~~~sl~t~l~a~ 90 (117)
++.-..-..++.+.+|...+|+|.|..|.|++.+++.+++.+++|++|+++||+||| +.+..+....++ ..+..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~--~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV--AFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH--HHHHh
Confidence 444444457777888889999999999999999999999999999999999999983 333333322222 23344
Q ss_pred ccccchhh
Q 039825 91 TQSHRIPL 98 (117)
Q Consensus 91 a~s~~~~l 98 (117)
++|++.++
T Consensus 91 ~~~~~~l~ 98 (382)
T PRK11128 91 AHSFWLLF 98 (382)
T ss_pred cccHHHHH
Confidence 56666644
No 95
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.54 E-value=2.1e-06 Score=67.77 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=58.2
Q ss_pred HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825 24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR 95 (117)
Q Consensus 24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~ 95 (117)
.+....|.+.++.|.+..+.|.+.+...++..+++++.|+++||+|||+.+..+.....++.....+.++.+
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFA 309 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 334446777888999999999999999999999999999999999999998877666666655555555543
No 96
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.54 E-value=2.4e-06 Score=65.58 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
+..+.+..++...-...+....|.+ ++++|.+..+.+.+.+...++..++++++|+++||+|||+.+..+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3444444555555445555555555 477899999999999999999999999999999999999987754433
No 97
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.52 E-value=2.7e-07 Score=76.48 Aligned_cols=69 Identities=16% Similarity=-0.034 Sum_probs=59.6
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
.+.++-+.+..-.|.+.+.|++.|++++|.||.++||+|||.++..|+..-++...+-+.+.|+..+++
T Consensus 58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~ 126 (451)
T KOG2615|consen 58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVL 126 (451)
T ss_pred hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677899999999999999999999999999999999999999999999999999944444
No 98
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.52 E-value=2.4e-07 Score=73.63 Aligned_cols=75 Identities=8% Similarity=-0.035 Sum_probs=63.4
Q ss_pred HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHH-HHHHHHHHHHHHHHHHHhcccc
Q 039825 20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAH-VIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~-vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
......+.+.+.+.+++|+++++.|.+.++..+..++.+|+.|+++|| +|||| .+..+...++++.+++.++++.
T Consensus 14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~ 93 (437)
T TIGR00792 14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF 93 (437)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence 334455677888899999999999999999999999999999999998 67754 6778888899888888877654
No 99
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.52 E-value=1.1e-06 Score=70.25 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
+..+.. .+..+.+..++.+.+..+.|.+.++..++..++++++|+++||+|||+.+..+.++.++...+.++++|.+.+
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 318 (420)
T PRK09528 240 DVFDQQ-FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEV 318 (420)
T ss_pred HHHHHH-HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 334433 3333444444457788899999999999999999999999999999999999999999998889888887754
Q ss_pred h
Q 039825 98 L 98 (117)
Q Consensus 98 l 98 (117)
.
T Consensus 319 ~ 319 (420)
T PRK09528 319 S 319 (420)
T ss_pred H
Confidence 3
No 100
>PRK03699 putative transporter; Provisional
Probab=98.52 E-value=2.3e-06 Score=67.97 Aligned_cols=87 Identities=6% Similarity=-0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l 87 (117)
..+.++.++...-...+...+|.+ ++++|++..|.|.+.+.+.++..++.++.|+++||+|||+++..+..+..+...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 344444444444334444445555 4678999999999999999999999999999999999999988777666655555
Q ss_pred HHhccccc
Q 039825 88 KAETQSHR 95 (117)
Q Consensus 88 ~a~a~s~~ 95 (117)
..+++|..
T Consensus 288 ~~~~~~~~ 295 (394)
T PRK03699 288 FVNTDDPS 295 (394)
T ss_pred HHHcCCch
Confidence 55555543
No 101
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.51 E-value=2.7e-06 Score=64.78 Aligned_cols=70 Identities=9% Similarity=-0.091 Sum_probs=60.0
Q ss_pred HHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825 24 LLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 24 il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s 93 (117)
......|...++ +|.+..+.|.+.+...++..+++++.|++.||+|||+++..+....+++....++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (365)
T TIGR00900 229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP 299 (365)
T ss_pred HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch
Confidence 333566777665 8999999999999999999999999999999999999999888888888777777664
No 102
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.50 E-value=1.1e-06 Score=73.82 Aligned_cols=91 Identities=11% Similarity=-0.043 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchHHHHHHH-
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRAHVIALE- 77 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr~vl~~~- 77 (117)
.+|+.+.+.+...-++..-....+. ++++.+++|.++.+.+.+..+..+...+.+|++|+++| |+||||++..+
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~-l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g 80 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSL-LTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG 80 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH
Confidence 4677777777766666554444455 55567889999999999999999999999999999999 59999998875
Q ss_pred HHHHHHHHHHHHhcccc
Q 039825 78 SNTEPVPVPRKAETQSH 94 (117)
Q Consensus 78 ~~~~sl~t~l~a~a~s~ 94 (117)
...-.++..+.+++.+.
T Consensus 81 ~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 81 AALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHhCchh
Confidence 55555566667776553
No 103
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.50 E-value=1.8e-06 Score=69.89 Aligned_cols=63 Identities=8% Similarity=0.009 Sum_probs=52.5
Q ss_pred hHHHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 26 PGVYKEVG-AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 26 ~~~lp~i~-~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
...+|... +++|.+..+.|.+.+...++..++++++|+++||+|||+++..+..+..+..+..
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 358 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPV 358 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34456655 6899999999999999999999999999999999999999888776666554433
No 104
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.49 E-value=3.1e-06 Score=65.69 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
.....-+.+++++|++..+.|.+.+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 333334455678999999999999999999999999999999999999998887765533
No 105
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.47 E-value=3.4e-06 Score=66.91 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=64.3
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
...|...+|.|.++.+.|.+.+...++..++.+++|++.||+|.|+++.++.+..++.-.+.++++|.+.+++
T Consensus 226 ~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T TIGR00902 226 GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL 298 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 3445555679999999999999999999999999999999999999999999999999989998888776543
No 106
>TIGR00895 2A0115 benzoate transport.
Probab=98.47 E-value=5.1e-06 Score=64.04 Aligned_cols=70 Identities=11% Similarity=-0.107 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE 77 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~ 77 (117)
...+.+..++...-...+....|.+.++.|.+..+.|.+.+...++..++.+++|+++||+|||+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL 321 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3444444555555555566667888999999999999999999999999999999999999999554433
No 107
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.46 E-value=3.3e-06 Score=66.86 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
|...+|.|.+..+.|.+.+...++..+.+.+.|++.||+|+|+++..+....++..++.++++|.+.+.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIV 298 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444679999999999999999999999999999999999999999999999988888888888776544
No 108
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.45 E-value=3e-06 Score=65.52 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=53.2
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
..+++++|.++.+.|.+.+.......+++++.|+++||+|||+++..+.....+...+..+.++.+.
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWA 290 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988888888889999999999999999988877766665555555555443
No 109
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.44 E-value=5.2e-06 Score=68.28 Aligned_cols=57 Identities=14% Similarity=-0.041 Sum_probs=46.6
Q ss_pred hHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 26 PGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 26 ~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
...+|. +++++|.+..+.+...+...++..++++.+|+++||+|||+++..+.....
T Consensus 270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334555 457789999888888888899999999999999999999998887765443
No 110
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.43 E-value=4.3e-06 Score=66.72 Aligned_cols=67 Identities=6% Similarity=-0.153 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA 75 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~ 75 (117)
+...+..++.......+....|...++.|.+..+.+.+.+...++..++++.+|+++||+|||+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3444555556666666666778888889999999999999999999999999999999999988653
No 111
>PRK03545 putative arabinose transporter; Provisional
Probab=98.42 E-value=5e-06 Score=65.77 Aligned_cols=75 Identities=9% Similarity=-0.175 Sum_probs=52.9
Q ss_pred HHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 22 VSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 22 ~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
........|.++++.|.+..+.|.+.+...++..+++++.|+++||+|||++.............+..++++.+.
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWH 296 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 344455556667778999999999999999999999999999999999987655443332222223344444443
No 112
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.42 E-value=5.8e-06 Score=64.39 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=56.1
Q ss_pred HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhccc
Q 039825 24 LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 24 il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~sl~t~l~a~a~s 93 (117)
.+...+|...++.|.+..+.|.+.+...++..++++++|++.||+ +||+.+..+..+..++...+.++.+
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM 285 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 334456777778899999999999999999999999999999999 6777777777777776666655443
No 113
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.41 E-value=4.3e-06 Score=69.33 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHHH-HHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAHV-IAL 76 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~v-l~~ 76 (117)
++||...++. .++..++.....+..+|...++.|.+.+|+|.+ +.....+ ++.+++|.++||+ |||+. +..
T Consensus 10 ~~~~~~~~~~-l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLI-LGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHH
Confidence 4455544444 445688888899999999999999999999997 3344444 6899999999999 99985 668
Q ss_pred HHHHHHHHHHHHHhcc
Q 039825 77 ESNTEPVPVPRKAETQ 92 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a~ 92 (117)
+.+..++++..+++++
T Consensus 87 ~~i~~~~~~~~~a~~~ 102 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE 102 (491)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8888888888888864
No 114
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.39 E-value=4.5e-06 Score=65.46 Aligned_cols=85 Identities=7% Similarity=-0.064 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
++.++...+.++........+....|.+.+++|.+..+.+.......++..++++++|+++||+|||+.+..+..+..++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44555555555555554455666778888999999999999999999999999999999999999999999888877777
Q ss_pred HHHHH
Q 039825 85 VPRKA 89 (117)
Q Consensus 85 t~l~a 89 (117)
.+..+
T Consensus 363 ~~~~~ 367 (481)
T TIGR00879 363 LFVLG 367 (481)
T ss_pred HHHHH
Confidence 66665
No 115
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.39 E-value=4.3e-06 Score=70.84 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
|.+.+-.++++.++..+-..+..+.++-+..+..-|+.+.|++..+..+-+.+.++++|.++||++||++++.+-++-.+
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRAL 87 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 34556677888888888888888888888888888999999999999999999999999999999999999988877665
Q ss_pred HHHH
Q 039825 84 PVPR 87 (117)
Q Consensus 84 ~t~l 87 (117)
..+.
T Consensus 88 ~~~~ 91 (524)
T PF05977_consen 88 VALL 91 (524)
T ss_pred HHHH
Confidence 5443
No 116
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.38 E-value=7.6e-06 Score=63.61 Aligned_cols=66 Identities=3% Similarity=-0.169 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHhCCChhhhHHHHHHHH-HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 25 LPGVYKEVGAALHTDPIGLDSLTLFRS-IVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 25 l~~~lp~i~~~~~ls~~q~G~l~s~~~-l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
+....|...++.|++..+.|.+.++.. ++..++.+++|+++||+|||+.+..+.++..++..+..+
T Consensus 228 ~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555569999999999887655 678899999999999999999998888887776665444
No 117
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.37 E-value=5.9e-06 Score=65.85 Aligned_cols=80 Identities=15% Similarity=0.025 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHH-HHHHHHHHHHHHH
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAH-VIALESNTEPVPV 85 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~-vl~~~~~~~sl~t 85 (117)
..-++..++-.......+|..-+|-|.|.+|+|++...... .+.+|++|+++||+ |||| .+..+..+.++++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34456677777888888999999999999999999776665 59999999999999 8875 7888889998888
Q ss_pred HHHHhccc
Q 039825 86 PRKAETQS 93 (117)
Q Consensus 86 ~l~a~a~s 93 (117)
.+++++++
T Consensus 83 ~~l~~~~~ 90 (402)
T PRK11902 83 AAMAFCPP 90 (402)
T ss_pred HHHHhcCc
Confidence 88888743
No 118
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.36 E-value=8.8e-06 Score=66.61 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHHHHHH
Q 039825 1 MKSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-RAHVIALESN 79 (117)
Q Consensus 1 ~~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-Rr~vl~~~~~ 79 (117)
||-+.|.-.+ +++.++-..+..+.++..-++-|.|..|.|.+.+...+...+++|++|+++||++ +||++.+..+
T Consensus 1 m~~~~rLs~~----~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l 76 (400)
T PF03825_consen 1 MKLKFRLSLM----YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSL 76 (400)
T ss_pred CcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence 4555554333 3444444455555567777778999999999999999999999999999999986 5788888777
Q ss_pred HHHHHHHHHHhccccchhh
Q 039825 80 TEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 80 ~~sl~t~l~a~a~s~~~~l 98 (117)
+-++......+.++++.++
T Consensus 77 ~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 77 LSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHhccHHHHH
Confidence 7777777777778887533
No 119
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.34 E-value=1.1e-05 Score=64.45 Aligned_cols=78 Identities=12% Similarity=-0.036 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
.+...+.......+...+|.+.++.|.+..+.|.+.+.+.++..++++.+|+++||+|||+.+..+..+..++..+..
T Consensus 211 ~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 211 GVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 333333344444444456666677999999999999999999999999999999999999998888766666655443
No 120
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2.5e-06 Score=72.03 Aligned_cols=95 Identities=8% Similarity=-0.138 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPG-VYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~-~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
.++-.++..++..+.|+..++. .+-.+++|.+....|+|.+.++|..+|+++++++|+|.||++-.+.+....+.|++.
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~ 124 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF 124 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence 4556678888999999996653 355577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhHh
Q 039825 85 VPRKAETQSHRIPLVA 100 (117)
Q Consensus 85 t~l~a~a~s~~~~l~~ 100 (117)
+++++...|+..+.+.
T Consensus 125 ~~~~~~~~s~~~~ial 140 (495)
T KOG2533|consen 125 GFLTAAVHSFPGLIAL 140 (495)
T ss_pred HHHHHHHhhhHHHHHH
Confidence 9998888898886653
No 121
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.32 E-value=1.8e-05 Score=62.79 Aligned_cols=64 Identities=6% Similarity=-0.181 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
+...+|...++.|.++.+.+.+.+...++..++++++|+++||+|||+++..+.++-.++....
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 313 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL 313 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445677767789999999999999999999999999999999999999988876655544433
No 122
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.29 E-value=1.4e-05 Score=63.00 Aligned_cols=65 Identities=6% Similarity=-0.123 Sum_probs=56.2
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR 95 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~ 95 (117)
.+++++|.++.+.|.+.+...++..+++++.|++.||+|||+++..+..+..++.....+.++.+
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA 293 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999888888877777654443
No 123
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.29 E-value=8.4e-06 Score=67.41 Aligned_cols=91 Identities=10% Similarity=-0.037 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-----hHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-----RAHVIAL 76 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-----Rr~vl~~ 76 (117)
++++.++.++...++..++-..+...+.+.+++++|++++|+|...+...+.+.+ -|++|.++||++ ||+.+.+
T Consensus 22 ~~~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~ 100 (468)
T TIGR00788 22 FHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVL 100 (468)
T ss_pred CCcchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHH
Confidence 4667778888888899998844445667777888999999999999999999988 555999999998 8888888
Q ss_pred HHHHHH-HHHHHHHhccc
Q 039825 77 ESNTEP-VPVPRKAETQS 93 (117)
Q Consensus 77 ~~~~~s-l~t~l~a~a~s 93 (117)
+.++.+ +.....+..++
T Consensus 101 ~~~l~~~~~~~~l~~~~~ 118 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKVS 118 (468)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 887774 33333333344
No 124
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.28 E-value=2e-05 Score=63.62 Aligned_cols=52 Identities=10% Similarity=-0.070 Sum_probs=44.0
Q ss_pred HHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 29 YKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 29 lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
+|. +++++|.+..+.+.+.+...++..+++++.|+++||+|||+++..+..+
T Consensus 266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~ 318 (432)
T PRK10406 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL 318 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 444 5677899999999999988888899999999999999999987765543
No 125
>PRK15075 citrate-proton symporter; Provisional
Probab=98.28 E-value=1.7e-05 Score=63.94 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHhHHHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825 23 SLLPGVYKEVG-AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES 78 (117)
Q Consensus 23 ~il~~~lp~i~-~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~ 78 (117)
..+....|.+- +..|++..|.+++...+.++..++.+++|+++||+|||+++..+.
T Consensus 255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~ 311 (434)
T PRK15075 255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT 311 (434)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444466654 458999999999999999999999999999999999999887654
No 126
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.25 E-value=1.9e-05 Score=63.55 Aligned_cols=73 Identities=8% Similarity=-0.043 Sum_probs=59.2
Q ss_pred HHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.......+....|.+.++.|.+..+.++......+...++.++.|+++||+|||+++..+..+..++.++.+.
T Consensus 283 ~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~ 355 (479)
T PRK10077 283 QFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355 (479)
T ss_pred HHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence 3333444555678888999999887887777888899999999999999999999999988888877766554
No 127
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.25 E-value=1.6e-05 Score=64.88 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=64.0
Q ss_pred HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
.|..==|++.... ++.|.+..|++.+....+....+.+++.|.++||+|||+.-+..++++++.++..-. +|+..+++
T Consensus 49 aDWLQGpY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~ 126 (354)
T PF05631_consen 49 ADWLQGPYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLL 126 (354)
T ss_pred HHHhhcchhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHH
Confidence 3434445555444 679999999999999999999999999999999999999999999999999865444 67766544
No 128
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.24 E-value=5.7e-06 Score=69.29 Aligned_cols=64 Identities=6% Similarity=-0.169 Sum_probs=59.3
Q ss_pred HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 33 GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 33 ~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
+.+++++..|-|++.+++++|+.+++.+.|+++||||-|+++..+.+++++.|+++-++.+...
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~ 128 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF 128 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999999999999999999999999999999999999999999888855543
No 129
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.23 E-value=1.6e-05 Score=62.94 Aligned_cols=64 Identities=5% Similarity=-0.143 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
....|.+.+..|.++.+.|.+.+...++..+++++.|++.||+|+|+.+..+..+.+++.++..
T Consensus 220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 3445667777999999999999999999999999999999999999999888777776665443
No 130
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.23 E-value=2e-05 Score=61.03 Aligned_cols=62 Identities=8% Similarity=-0.133 Sum_probs=52.2
Q ss_pred HHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 29 YKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 29 lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.|. +++++|.++.+.|.+.+...++..+++++.|++.||+|||+.+..+..+..++..+..+
T Consensus 229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 343 45689999999999999999999999999999999999999988887777766555544
No 131
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.22 E-value=1.4e-05 Score=61.78 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
..-..+++.+|.++.+.|.+.+...+...++.+++|+++||+|||+.+..+......+..+..+
T Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 310 (366)
T TIGR00886 247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 3334556678999999999999999999999999999999999998887776666555555443
No 132
>PRK09952 shikimate transporter; Provisional
Probab=98.21 E-value=3.7e-05 Score=62.43 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
+...+.+++++|.+..+...+.........++.+++|+++||+|||+++..+.++-.+
T Consensus 271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~ 328 (438)
T PRK09952 271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL 328 (438)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3444456788999988777777677778889999999999999999988877654433
No 133
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.21 E-value=2.3e-05 Score=61.89 Aligned_cols=61 Identities=7% Similarity=-0.169 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l 87 (117)
..+|...++.|.+..+.|.+.+...++..+++.+.|+++||+|||+++..+..+..++..+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3467777778999999999999999999999999999999999999998777776665443
No 134
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.21 E-value=2.5e-05 Score=55.73 Aligned_cols=83 Identities=16% Similarity=-0.022 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCCh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYKEVGAALHTDP--IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~--~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
.....++...+........+.+.++.+.+. .+.++..+.+.+...++++++|+++||+|||+.+..+.....++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 444555566888888889999999998777 589999999999999999999999999999999998887766667777
Q ss_pred Hhccc
Q 039825 89 AETQS 93 (117)
Q Consensus 89 a~a~s 93 (117)
++..+
T Consensus 87 ~~~~~ 91 (338)
T COG0477 87 ALAPN 91 (338)
T ss_pred HhCcc
Confidence 77766
No 135
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.21 E-value=2.9e-05 Score=60.92 Aligned_cols=57 Identities=5% Similarity=-0.141 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 43 LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 43 ~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
.|.+.++..++..++.+.+|+++||+|||+++..+.....+..+..++.++.+...+
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 466667778888899999999999999999999998888877777777666655433
No 136
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.4e-05 Score=66.32 Aligned_cols=85 Identities=8% Similarity=-0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP 86 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~ 86 (117)
.+.+++-|+...-...-++..+|.+ +++|++++.+.|...+.+.+..++.-|.+|+|+||+|.+|++......-.+++.
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~ 299 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA 299 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence 3777788877777666666666655 777999999999999999999999999999999999999999998888888888
Q ss_pred HHHhcc
Q 039825 87 RKAETQ 92 (117)
Q Consensus 87 l~a~a~ 92 (117)
+.++.+
T Consensus 300 ~l~~~~ 305 (417)
T COG2223 300 LLSLFL 305 (417)
T ss_pred HHHccc
Confidence 877764
No 137
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.19 E-value=2.9e-05 Score=68.42 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 45 SLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 45 ~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
...++..++..+++++.|+++||+|||++++++.+++++++++.+++++...++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll 652 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI 652 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 345567789999999999999999999999999999999999999887755543
No 138
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.18 E-value=3e-05 Score=59.00 Aligned_cols=65 Identities=9% Similarity=-0.042 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH 72 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~ 72 (117)
+....+..++...-...+....|. +++++|.+..+.|.+.+...++..++++++|+++||+|||+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555555555555554 45678999999999999999999999999999999999996
No 139
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.17 E-value=3.5e-05 Score=59.99 Aligned_cols=50 Identities=2% Similarity=-0.116 Sum_probs=44.8
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
...++.|.++.+.|.+.+...++..+++++.|++.||+|||+++..+..+
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999988876654
No 140
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.17 E-value=2.7e-05 Score=62.59 Aligned_cols=63 Identities=10% Similarity=-0.038 Sum_probs=53.9
Q ss_pred HHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 27 GVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 27 ~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
..+|.. ++.+|.++.|.|++.....++..+++++.|++.||+|||+++..+..+.+++.....
T Consensus 276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 344544 556899999999999999999999999999999999999999988888777776655
No 141
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.17 E-value=4e-05 Score=60.83 Aligned_cols=62 Identities=8% Similarity=-0.190 Sum_probs=50.9
Q ss_pred HHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 29 YKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 29 lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.|.+ ++++|+++.+.|+.......+..++.++.|+++||+|+|+.+..+..+..++..+.++
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL 300 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6779999999999988888899999999999999999999988887766665555544
No 142
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.17 E-value=1.3e-06 Score=57.58 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 47 TLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 47 ~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
.+.+.++..++++++|++.||+|||+.+..+..+..++...++++.|++...
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLI 55 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3456788899999999999999999999999999998888888877766543
No 143
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=3.1e-06 Score=70.52 Aligned_cols=67 Identities=15% Similarity=0.004 Sum_probs=62.0
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHh
Q 039825 34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
++.+-+++|.|++...+++.|.+.+|+.|.+.||+|+|-.+..|+.+....|++.+|..+|...+++
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vA 165 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVA 165 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999865554
No 144
>PRK10504 putative transporter; Provisional
Probab=98.15 E-value=5.1e-05 Score=61.31 Aligned_cols=80 Identities=8% Similarity=-0.048 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 12 NLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.++.++...-........|..-+ .+|.++.+.|++.....++..++.+++|++.||+|||+++..+....++...+..+
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 33344444444556666776655 58999999999999999999999999999999999999999888888877666655
Q ss_pred c
Q 039825 91 T 91 (117)
Q Consensus 91 a 91 (117)
.
T Consensus 347 ~ 347 (471)
T PRK10504 347 V 347 (471)
T ss_pred c
Confidence 3
No 145
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.15 E-value=4.5e-05 Score=60.79 Aligned_cols=58 Identities=7% Similarity=-0.176 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCChhhhHHHHHHH-HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 28 VYKEVGAALHTDPIGLDSLTLFR-SIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 28 ~lp~i~~~~~ls~~q~G~l~s~~-~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
..+.+.+++|+++.+.|++.+.. ..+..++.+++|++.||+|||+.+..+.....+..
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34557788999999999998654 45688999999999999999998877666655543
No 146
>PRK10133 L-fucose transporter; Provisional
Probab=98.14 E-value=5.8e-05 Score=61.72 Aligned_cols=70 Identities=6% Similarity=-0.202 Sum_probs=55.4
Q ss_pred HHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 039825 24 LLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 24 il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s 93 (117)
......+.+ ++++|.++.+.|.....+.+++.++.++.|++.||+|||+++..+..+-.+...+..+.++
T Consensus 277 ~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 347 (438)
T PRK10133 277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444454 4578999999999999999999999999999999999999998887776655555544443
No 147
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.12 E-value=2.2e-05 Score=69.81 Aligned_cols=73 Identities=14% Similarity=-0.053 Sum_probs=59.7
Q ss_pred HhHHHHHHHHHhCCChh-hhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 25 LPGVYKEVGAALHTDPI-GLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 25 l~~~lp~i~~~~~ls~~-q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
.....+.+++++|++.. +.|++.+...++..++++++|+++||+++++++.++.++.+++.++.+++.+....
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASV 325 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444455777999999 99999999999999999999999999999999888888777777777766665443
No 148
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.09 E-value=5.5e-05 Score=62.31 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=38.5
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
-+.+.+++|.+..+.+.+.+.+.++..++.+++|+++||+|||
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 3445677899999999999999999999999999999999976
No 149
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.08 E-value=2.4e-05 Score=63.05 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP 86 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~ 86 (117)
-+..+.+..++..+...+.....+...++.--++.+.+.+..+..++..++.|++++++||+|+|+++..+..++.++.+
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 34456666777777778777777777666433446788888899999999999999999999999999999999999999
Q ss_pred HHHhcc--ccchhhHh
Q 039825 87 RKAETQ--SHRIPLVA 100 (117)
Q Consensus 87 l~a~a~--s~~~~l~~ 100 (117)
...+.+ |.+..++.
T Consensus 306 ~~~~~~~~~~~~~~i~ 321 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLIL 321 (428)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 888876 66554443
No 150
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.07 E-value=6.4e-05 Score=62.40 Aligned_cols=66 Identities=6% Similarity=-0.088 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHhCCChhhhHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 18 ERADVSLLPGVYKEVGAALHTDPIGLDSLTL-FRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 18 d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s-~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
...+........|.+.++.|.+..+.|.+.. ...++..++.+++|+++||+|||+.+..+..+..+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l 301 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV 301 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444455566667789999999999984 66789999999999999999999887765544343
No 151
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.07 E-value=6.3e-05 Score=62.07 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=54.0
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
-..+++..|.++.|.|.......++..+++++.|++.||+|||+++..+..+..++..+.++
T Consensus 283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~ 344 (495)
T PRK14995 283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAM 344 (495)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34567778999999999999999999999999999999999999999888888777655543
No 152
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.06 E-value=5.4e-05 Score=60.38 Aligned_cols=72 Identities=7% Similarity=-0.033 Sum_probs=59.7
Q ss_pred HhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 25 LPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 25 l~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
+...+|...++ +|.+..+.|++.+...++..+++++.|++.||.++++.+..+....+++..+.+++++...
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL 314 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence 34456666666 9999999999999999999999999999999988888888888788877777777776544
No 153
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.06 E-value=3.6e-05 Score=60.88 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHH--HHHHHHHHHHHHHH-HHHhhhhchHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLT--LFRSIVQSSCYPLA-AYLFVHHNRAHVIALES 78 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~--s~~~l~~~l~~p~~-G~LaDR~GRr~vl~~~~ 78 (117)
+..+...++.+++-..+..+.+|...||.|.+.+|+|.+. +.......+.+|++ ++..||+||||..+..+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 5667778888999989999999999999999999999984 56788888999999 55799999998865544
No 154
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.05 E-value=3.2e-05 Score=62.71 Aligned_cols=81 Identities=6% Similarity=-0.062 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCCh--------hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYKEVGAALHTDP--------IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~~~~~ls~--------~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
+.++.++...-.+......+...++.+.++ ++.|.+.+...++..++.++.|+++||+|||+++..+.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~ 292 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWA 292 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 334444444333344444555566666443 667999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 039825 83 VPVPRKAET 91 (117)
Q Consensus 83 l~t~l~a~a 91 (117)
+.....+.+
T Consensus 293 v~~~l~~~~ 301 (418)
T TIGR00889 293 LRFGFFAYG 301 (418)
T ss_pred HHHHHHHHc
Confidence 887666663
No 155
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.05 E-value=8.2e-05 Score=58.94 Aligned_cols=62 Identities=5% Similarity=0.000 Sum_probs=53.1
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 37 HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 37 ~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+.++++|.+..+
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~ 311 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVV 311 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 55667789999999999999999999999999999999999999888877777777766543
No 156
>PRK09669 putative symporter YagG; Provisional
Probab=98.05 E-value=1.5e-05 Score=64.49 Aligned_cols=74 Identities=9% Similarity=-0.052 Sum_probs=57.8
Q ss_pred HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHH-HHHHHHHHHHHHHHHHhccc
Q 039825 20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHV-IALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~v-l~~~~~~~sl~t~l~a~a~s 93 (117)
....+-.++.....+++|+++++.|.+.++..+..++..|+.|+++|| +||||. +..+....++...++-..++
T Consensus 24 ~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~ 102 (444)
T PRK09669 24 VWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPD 102 (444)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCC
Confidence 334445567888899999999999999999999999999999999999 777544 44566666666655544443
No 157
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.04 E-value=5.9e-05 Score=60.43 Aligned_cols=65 Identities=17% Similarity=-0.103 Sum_probs=51.9
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccc
Q 039825 30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHR 95 (117)
Q Consensus 30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~ 95 (117)
+.+++.+|.++.+.|.+.+...++..++++..|++.||+++|+++..+. +.++...+.++.++++
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 294 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLL 294 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHH
Confidence 4567779999999999999999999999999999999999999888775 3344444445544443
No 158
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.03 E-value=0.00018 Score=56.46 Aligned_cols=84 Identities=13% Similarity=-0.052 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHH--HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMER-ADVSLLPGVYKEVGA--ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 8 l~ll~l~~~~d~-~D~~il~~~lp~i~~--~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
+.+..++.++-. .+..+-......+++ .+|+++.+.+...+.+..++.++....+++.||+|+|+++..+..+-.+.
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~ 221 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL 221 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 333444444433 466666666666654 37999999999999999999999999999999999999988777665555
Q ss_pred HHHHHhc
Q 039825 85 VPRKAET 91 (117)
Q Consensus 85 t~l~a~a 91 (117)
..+....
T Consensus 222 ~~l~~~~ 228 (310)
T TIGR01272 222 SIGAALT 228 (310)
T ss_pred HHHHHHc
Confidence 5444443
No 159
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.03 E-value=0.00011 Score=57.90 Aligned_cols=68 Identities=13% Similarity=-0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 28 VYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 28 ~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
..+...++.|++ +.+...+.+.++..++.++.|++.||+|||+.+..+....+++..+.++++|.+..
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T PRK05122 238 FITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMA 305 (399)
T ss_pred HHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344444556663 45677778889999999999999999999999998888888887777777665543
No 160
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.03 E-value=5.7e-05 Score=64.05 Aligned_cols=77 Identities=17% Similarity=0.032 Sum_probs=68.0
Q ss_pred hHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHhhc
Q 039825 26 PGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALF 102 (117)
Q Consensus 26 ~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~ 102 (117)
..++|.+ ++++|.+..++|++.+++.+|..+++.+.+++.+|+++++++..+.++++++.+..+++++.+..++.++
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~ 315 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF 315 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3456666 4568999999999999999999999999999999999999999999999999999999999887665543
No 161
>PRK12382 putative transporter; Provisional
Probab=97.99 E-value=9.4e-05 Score=58.32 Aligned_cols=71 Identities=7% Similarity=-0.207 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
+....+..-++.|++. .+...+.+.++..++++++|++.||+|||+.+..+..+..++..+.++++|....
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (392)
T PRK12382 235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVA 305 (392)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHH
Confidence 3333444555667654 5666677888889999999999999999999999988888888888777766543
No 162
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.94 E-value=0.0002 Score=60.14 Aligned_cols=85 Identities=11% Similarity=-0.096 Sum_probs=67.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH--HHHHHHHHHHH
Q 039825 6 LTMALVNLAGI-MERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA--HVIALESNTEP 82 (117)
Q Consensus 6 ~~l~ll~l~~~-~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr--~vl~~~~~~~s 82 (117)
+-+....++++ .++.-.+++......-++++|++.+|+..+.....+...+|+.++|++.||+|-| +++..++.+|.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 33344444544 3554555667777777889999999999999999999999999999999999999 99999999997
Q ss_pred HHHHHHHh
Q 039825 83 VPVPRKAE 90 (117)
Q Consensus 83 l~t~l~a~ 90 (117)
+..+...+
T Consensus 361 ~i~~~g~~ 368 (477)
T PF11700_consen 361 IIPLYGLF 368 (477)
T ss_pred HHHHHHHH
Confidence 66555443
No 163
>PRK09848 glucuronide transporter; Provisional
Probab=97.94 E-value=4.6e-05 Score=61.66 Aligned_cols=70 Identities=4% Similarity=-0.049 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh----chHHHH-HHHHH
Q 039825 10 LVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH----NRAHVI-ALESN 79 (117)
Q Consensus 10 ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~----GRr~vl-~~~~~ 79 (117)
.-+++.+.+.+-.. ..+++...+.+.+|++..+.|.+.+...+..++..|++|+++||. ||||.. ..+..
T Consensus 12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 33445545554444 345667788999999999999999999999999999999999996 777755 33433
No 164
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.92 E-value=0.00011 Score=61.61 Aligned_cols=77 Identities=6% Similarity=0.045 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
.+++++-+++.+--...++..+|.+.++ ..+..+.........+...+..|++|+++||+|+|+++..+...-.+.+
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3556666666665555566666666554 2233333333445678889999999999999999999987776555544
No 165
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00013 Score=60.31 Aligned_cols=95 Identities=8% Similarity=-0.091 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
|+++........+...--...++++-|.+++..|.+.++.+++...|.++..+|+.+.|+++|| +.|+.+.....+..+
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~ 288 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL 288 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence 3344333333333344444688899999999999999999999999999999999999999999 888888888777666
Q ss_pred HHHHHHhc-cccchhhH
Q 039825 84 PVPRKAET-QSHRIPLV 99 (117)
Q Consensus 84 ~t~l~a~a-~s~~~~l~ 99 (117)
..+...+. ++....++
T Consensus 289 ~~l~l~~~~~~~~~~~~ 305 (394)
T COG2814 289 ALLALTFTGASPALALA 305 (394)
T ss_pred HHHHHHHhcchHHHHHH
Confidence 66665554 33333333
No 166
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.91 E-value=0.00028 Score=56.51 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
....|.+.++.|++..+.|.+.+.+.++..+++.+.|++.||.+|+ .+..+..+..+
T Consensus 237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~ 293 (394)
T PRK10213 237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHH
Confidence 3445777788999999999999999999999999999999996554 43333344333
No 167
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.90 E-value=8.6e-05 Score=59.02 Aligned_cols=80 Identities=14% Similarity=-0.069 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
+.+..++...-........+...+ .++ +..+.+.+.+...++..++++++|+++||+|||+++..+..+..++.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333444433 344 566788888888999999999999999999999999998887777766665
Q ss_pred hc
Q 039825 90 ET 91 (117)
Q Consensus 90 ~a 91 (117)
+.
T Consensus 306 ~~ 307 (437)
T TIGR00792 306 FA 307 (437)
T ss_pred Hc
Confidence 54
No 168
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.89 E-value=8e-05 Score=62.24 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++.....+++-..+.|+.+ +++....-.-+.++|++.+|+.++....++..++|+.++|+|.||+|-|+++..++++++
T Consensus 251 ~~~i~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred ccchHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 3333444444444444433 445544445566999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 039825 83 VPVPRKAET 91 (117)
Q Consensus 83 l~t~l~a~a 91 (117)
+.++..-+.
T Consensus 330 ~~~~~~~~~ 338 (438)
T COG2270 330 IAALYLIFL 338 (438)
T ss_pred HHHHHHHHc
Confidence 987664443
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.89 E-value=0.00011 Score=60.59 Aligned_cols=64 Identities=11% Similarity=-0.081 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCChhhhHH------------HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 27 GVYKEVGAALHTDPIGLDS------------LTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~------------l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.-.|.+.++.|.+..+.+. ...+..++..++..++|+++||+|||+++..+..+-+++..+.++
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 3367777788887653321 123344566668889999999999999998877766665544443
No 170
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.84 E-value=0.00025 Score=56.06 Aligned_cols=60 Identities=12% Similarity=-0.142 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHHHHHhCCChhhhHHHHHHHH-HHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRS-IVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~-l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+....+. .+...+|.|+++.+.|.+..... ....++..+.|++.||+|+|+++..+..+.
T Consensus 224 ~~~~~~~-~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 224 AVSGFGL-SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHHHH-hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444 44555668999999999988775 466677899999999999999998776654
No 171
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.83 E-value=0.00014 Score=60.33 Aligned_cols=76 Identities=5% Similarity=-0.161 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE 77 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~ 77 (117)
+++++-.+.+++-+++-++-.++.- ..-.-++++-|+|.+|.|.+.++..+...+.+|+.|.++||.|.||-++..
T Consensus 3 ~~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 3 YFKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp CCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 4566666777777777676666544 444455667999999999999999999999999999999999977655443
No 172
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.82 E-value=0.00025 Score=58.06 Aligned_cols=87 Identities=6% Similarity=-0.201 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHH--HHHHHHHHHHHH
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIA--LESNTEPVPVPR 87 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~--~~~~~~sl~t~l 87 (117)
.++.++..+-.......+|...++.|.+..+.|.+.+...++..++++++|+++||. ++|+... .+....++..++
T Consensus 247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333334455666678999999999999999999999999999999983 3443333 334444555556
Q ss_pred HHhccccchhh
Q 039825 88 KAETQSHRIPL 98 (117)
Q Consensus 88 ~a~a~s~~~~l 98 (117)
+++++|++.+.
T Consensus 327 ~~~~~~~~~~~ 337 (455)
T TIGR00892 327 CALAGDYTGLV 337 (455)
T ss_pred HHHhchHHHHH
Confidence 66667766543
No 173
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00018 Score=59.31 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=63.5
Q ss_pred HHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 22 VSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 22 ~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.+.+++++++|++|.|+|.++.|++++...++.++.+|+..+++.|+|-.+.+.+++++-.+++..=..
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~ 96 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL 96 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999999999999999999999888888766544
No 174
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.80 E-value=0.00051 Score=55.84 Aligned_cols=65 Identities=5% Similarity=-0.144 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAH 72 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~ 72 (117)
++...+..++-+.-...+...+|.. +++.|.+..+.+.+.+.+.++..++.++.|+++||+ |||+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 4444444444443333444455665 555899999999999999999999999999999999 5554
No 175
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.76 E-value=0.00044 Score=55.70 Aligned_cols=65 Identities=9% Similarity=-0.090 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh--CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAAL--HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV 73 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~--~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v 73 (117)
+...+.+++...-...+..-+|.+-++. +.+..+.|.+.+...++..++.+.+|+++||+|||+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 4445555555544455555677777775 6678899999999999999999999999999997764
No 176
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.75 E-value=0.00056 Score=55.30 Aligned_cols=61 Identities=8% Similarity=-0.076 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH 68 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~ 68 (117)
++.+.++.++.+.-...+...+|.+ +++.|++..+.+...+.+.++..++.+++|+++||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 4445555555555444444445555 477899999999999999999999999999999999
No 177
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.75 E-value=0.00015 Score=59.57 Aligned_cols=79 Identities=8% Similarity=-0.060 Sum_probs=58.7
Q ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchH-HHHHHHHHHHHHHH
Q 039825 12 NLAGIMERA-DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRA-HVIALESNTEPVPV 85 (117)
Q Consensus 12 ~l~~~~d~~-D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr-~vl~~~~~~~sl~t 85 (117)
++|.+-+.+ ...+.+++.....+..|+++++.|.+.++.-+.-++..|++|+++| |+||| +-+..+....+++.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 344333333 3344556777788889999999999999999999999999999999 66995 45555666667766
Q ss_pred HHHHh
Q 039825 86 PRKAE 90 (117)
Q Consensus 86 ~l~a~ 90 (117)
.++-.
T Consensus 92 ~llf~ 96 (473)
T PRK10429 92 FLLFS 96 (473)
T ss_pred HHHHc
Confidence 55533
No 178
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.75 E-value=0.00024 Score=53.88 Aligned_cols=69 Identities=14% Similarity=-0.112 Sum_probs=55.7
Q ss_pred HHHhHHHHHH-HHHhCCC-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 23 SLLPGVYKEV-GAALHTD-PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 23 ~il~~~lp~i-~~~~~ls-~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
.......|.. ++++|.+ ..+.|.+.+...++..+++++.|+++||+|+|+..........+......+.
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665 8999999 8999999999999999999999999999999877777766666665554443
No 179
>PRK11043 putative transporter; Provisional
Probab=97.72 E-value=0.00085 Score=53.03 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
...|.+.++.|.++.+.|+......++..+++...+++.||+|+|+.+.......++.
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3466677789999999999888888999999999999999999998765554444443
No 180
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.71 E-value=0.00025 Score=63.68 Aligned_cols=84 Identities=11% Similarity=-0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
.++.+.++.++..+-...+...+|. +++.+|.++.+.|++.+++.++..+++++.|+++||+++++.+..+.++.+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 305 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFG 305 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHH
Confidence 3444444444444333333334444 456689999999999999999999999999999999888877776666666665
Q ss_pred HHHHh
Q 039825 86 PRKAE 90 (117)
Q Consensus 86 ~l~a~ 90 (117)
+..++
T Consensus 306 ~~l~~ 310 (1140)
T PRK06814 306 LDLAF 310 (1140)
T ss_pred HHHHh
Confidence 54544
No 181
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.69 E-value=2.3e-05 Score=67.39 Aligned_cols=88 Identities=14% Similarity=0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH-HHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIAL-ESNTEPVPV 85 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~-~~~~~sl~t 85 (117)
.++.+=+-+++-+.-...+-+.++..-+.+|++++|+|.+....-+..+++.|+||+++|||-+||.+.+ +++.+..++
T Consensus 12 ~l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~ 91 (618)
T KOG3762|consen 12 ALIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT 91 (618)
T ss_pred hhheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3444444444444455567778888999999999999999999999999999999999999998866554 555688888
Q ss_pred HHHHhcccc
Q 039825 86 PRKAETQSH 94 (117)
Q Consensus 86 ~l~a~a~s~ 94 (117)
++..|++.-
T Consensus 92 fll~fv~P~ 100 (618)
T KOG3762|consen 92 FLLVFVPPV 100 (618)
T ss_pred HheeeccCc
Confidence 777765433
No 182
>PRK09848 glucuronide transporter; Provisional
Probab=97.61 E-value=0.00045 Score=55.89 Aligned_cols=82 Identities=4% Similarity=-0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
..+..++...-........|.. ++.+|.++.+.++......++..++++++|+++||+|+|+++..+..+..++.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444443 445777665555555555677888999999999999999999999988888777766
Q ss_pred hcc
Q 039825 90 ETQ 92 (117)
Q Consensus 90 ~a~ 92 (117)
+.+
T Consensus 313 ~~~ 315 (448)
T PRK09848 313 WVS 315 (448)
T ss_pred HcC
Confidence 643
No 183
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.59 E-value=0.00039 Score=57.04 Aligned_cols=76 Identities=9% Similarity=-0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 13 LAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 13 l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
+..++...-..+.....+...+...-+..+.+.+.+...++..++.+++|+++||+|+|+.+..+..++.++.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444555555444456667777777778999999999999999999999988877666555443
No 184
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.57 E-value=1.6e-05 Score=67.57 Aligned_cols=88 Identities=8% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP 86 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~ 86 (117)
.+..+++..++..+-...+..++..|++.|+++.+|.|++.+.+-++..+..++..|+++|.+|.|.+..|.++.+++++
T Consensus 4 fl~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 4 FLVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 34555666666777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccc
Q 039825 87 RKAETQSHR 95 (117)
Q Consensus 87 l~a~a~s~~ 95 (117)
++++ +.+.
T Consensus 84 l~~l-Phf~ 91 (539)
T PF03137_consen 84 LFAL-PHFL 91 (539)
T ss_dssp ---------
T ss_pred HHhc-cHhh
Confidence 9988 5443
No 185
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.51 E-value=0.0013 Score=50.18 Aligned_cols=62 Identities=6% Similarity=-0.178 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039825 8 MALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN 69 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G 69 (117)
++.+.+..++...-...+....|. +++++|.++.+.|.+.+.+.++..++.++.|+++||++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 344455555555444444444444 56678999999999999999999999999999999863
No 186
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.50 E-value=0.00074 Score=52.60 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
||..+..........+ -....+.--|.+|+.+|.|++|+..+.++..++..+ +++.|.+.||+|-+.++.+|...-.+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5655444443333332 344667778999999999999999999999999986 58999999999999999888766555
Q ss_pred HHHHHH
Q 039825 84 PVPRKA 89 (117)
Q Consensus 84 ~t~l~a 89 (117)
+-....
T Consensus 79 GY~~~~ 84 (250)
T PF06813_consen 79 GYGLLW 84 (250)
T ss_pred HHHHHH
Confidence 544433
No 187
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.50 E-value=0.0028 Score=51.37 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
.++.+.+.++..+.-...+..-+|.. ++++|.+..+.|++.+...++..+++++.|+++||+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566665555555555556655 667899999999999999999999999999999998755
No 188
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0012 Score=55.84 Aligned_cols=94 Identities=7% Similarity=-0.097 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN--RAHVIALESNTEPV 83 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~sl 83 (117)
+.++.+.++..+..+-..+-...+|+..++.+.+..|...+.++...+-.++-++.|+++|+.. ++.+..+++++-++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 4567778888888888888888999999999999999999999999999999999999999999 66788888888999
Q ss_pred HHHHHHhccccchhhH
Q 039825 84 PVPRKAETQSHRIPLV 99 (117)
Q Consensus 84 ~t~l~a~a~s~~~~l~ 99 (117)
+.+.+.++++++.+.+
T Consensus 378 ~~~~~p~~~~~~~l~~ 393 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIV 393 (509)
T ss_pred HHHHHHHhccHHHHHH
Confidence 9999999999966443
No 189
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.0012 Score=56.05 Aligned_cols=80 Identities=8% Similarity=-0.058 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH--------HHhC--CChhhh----HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825 12 NLAGIMERADVSLLPGVYKEVG--------AALH--TDPIGL----DSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE 77 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~--------~~~~--ls~~q~----G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~ 77 (117)
.++.+=.++....++...+.++ +.+| +++.++ +.+++++.+|..+|+...|.++||+|||..+.++
T Consensus 17 ~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~ 96 (485)
T KOG0569|consen 17 TLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLS 96 (485)
T ss_pred HHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3444444455555555444333 3345 555544 4556789999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhc
Q 039825 78 SNTEPVPVPRKAET 91 (117)
Q Consensus 78 ~~~~sl~t~l~a~a 91 (117)
.++.-++..+.+++
T Consensus 97 ~~l~~~~~~~~~~s 110 (485)
T KOG0569|consen 97 NLLAVLAALLMGLS 110 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777665554
No 190
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.41 E-value=0.0019 Score=52.17 Aligned_cols=45 Identities=4% Similarity=-0.167 Sum_probs=37.6
Q ss_pred HHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 27 GVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 27 ~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
..+|.. +++.|.++.+.|+..+.+.++..++.+++|+++||+|++
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344554 455799999999999999999999999999999999654
No 191
>PRK10054 putative transporter; Provisional
Probab=97.41 E-value=0.0008 Score=53.92 Aligned_cols=62 Identities=6% Similarity=-0.175 Sum_probs=50.1
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc-cccc
Q 039825 34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET-QSHR 95 (117)
Q Consensus 34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a-~s~~ 95 (117)
++.+.+....|.+.+.........+++.|++.||+|+|+.+..+..+..++....+++ ++.+
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 299 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLL 299 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHH
Confidence 4567777788888888888888889999999999999999998888877777666654 3444
No 192
>TIGR00898 2A0119 cation transport protein.
Probab=97.39 E-value=0.0015 Score=53.20 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825 46 LTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 46 l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
......+...++.++.|+++||+|||+++..+.++.+++.++..+.++.
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~ 408 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD 408 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3345567778889999999999999999999999988888887776554
No 193
>PRK11462 putative transporter; Provisional
Probab=97.37 E-value=0.0038 Score=51.43 Aligned_cols=70 Identities=11% Similarity=-0.049 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
..++...-..+........-+...-++...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3444444444444444444444333444556677788888899999999999999999987655444433
No 194
>PRK09669 putative symporter YagG; Provisional
Probab=97.29 E-value=0.0026 Score=51.48 Aligned_cols=73 Identities=10% Similarity=-0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 039825 14 AGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVP 86 (117)
Q Consensus 14 ~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~ 86 (117)
..++...-.++.+.......+...-++...+.+.+...+...++.+++++++||+|+|+.+..+.....+...
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443322333334455566788888999999999999999999888776665443
No 195
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.24 E-value=0.0099 Score=48.23 Aligned_cols=78 Identities=4% Similarity=-0.157 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825 17 MERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 17 ~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
....+..+.+.+.+..++. .+.+..+.+...+.+..+..++..+.|++.||+++|+++..+...-.+..++..++++.
T Consensus 244 yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~ 322 (410)
T TIGR00885 244 YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH 322 (410)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 3444445555545554432 24455555656677778889999999999999999999988877777777777776553
No 196
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0075 Score=51.40 Aligned_cols=85 Identities=12% Similarity=-0.044 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHhC----CChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVS-LLPGVYKEVGAALH----TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNTE 81 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~----ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~~ 81 (117)
+.++...=+-|++... +=..+.-++.++++ .++++..-+.++|..---+...++||++||+ |+|+.+..|.++.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3444444444444433 22234555666666 9999998888877666668999999999995 9999999999999
Q ss_pred HHHHHHHHhcc
Q 039825 82 PVPVPRKAETQ 92 (117)
Q Consensus 82 sl~t~l~a~a~ 92 (117)
.++.++.+.+.
T Consensus 103 ~iGh~~L~~~~ 113 (498)
T COG3104 103 AIGHLVLAISS 113 (498)
T ss_pred HHHHHHHhccc
Confidence 99999988874
No 197
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.0075 Score=50.73 Aligned_cols=73 Identities=14% Similarity=-0.014 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGV-YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIAL 76 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~-lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~~ 76 (117)
+++.++++++++++-|+-|..+.-= --.+.|+-|.|..+.++..+.|-++...|++++||++||. |||.+..+
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 3567899999999999999976643 3456778899999999999999999999999999999997 56655443
No 198
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.0051 Score=52.21 Aligned_cols=88 Identities=8% Similarity=-0.047 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
.||.....+.+......-....+..--..+-++-|.++.+.-++.........+.+..+.++.||+|||+.++.+..+-.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA 346 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 35554444444333333333345555667788889999999999999999999999999999999999999998877665
Q ss_pred HHHHHHHh
Q 039825 83 VPVPRKAE 90 (117)
Q Consensus 83 l~t~l~a~ 90 (117)
++..+...
T Consensus 347 ~~~~~~~~ 354 (485)
T KOG0569|consen 347 VALLLMSI 354 (485)
T ss_pred HHHHHHHH
Confidence 55554433
No 199
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.13 E-value=0.0003 Score=56.72 Aligned_cols=71 Identities=14% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh----hhchHHHHH-HHHHHHHHHHHHHHhc
Q 039825 21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV----HHNRAHVIA-LESNTEPVPVPRKAET 91 (117)
Q Consensus 21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD----R~GRr~vl~-~~~~~~sl~t~l~a~a 91 (117)
.......+.+...+.+|+++...|.+..+..+.-++..|+.|+++| |+||||..+ .|....+++..++...
T Consensus 17 ~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~ 92 (428)
T PF13347_consen 17 WSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP 92 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence 3334456778888889999999999999999999999999999999 899887665 5666666666666554
No 200
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.00 E-value=0.014 Score=46.89 Aligned_cols=71 Identities=4% Similarity=-0.111 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV-HHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD-R~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
...|...+|.+.++.+.|++.+...++...++.+.+++.| |++.++.+..+..+.+++..+.+++++++..
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQL 300 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456655665558889999988877766655555566665 5676777778888888888788887777543
No 201
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.94 E-value=0.0013 Score=55.91 Aligned_cols=86 Identities=6% Similarity=-0.060 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch-HHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPG-VYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-AHVIALES 78 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~-~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-r~vl~~~~ 78 (117)
+.+||.+++..+-.++.....+++.. .-|++++ |.+.+.+..|+++++..+++++++|.+|++.-|.+. |+.+..|.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 56899999999999999988886654 4566655 488889999999999999999999999999999996 67777777
Q ss_pred HHHHHHHHH
Q 039825 79 NTEPVPVPR 87 (117)
Q Consensus 79 ~~~sl~t~l 87 (117)
++-.++.++
T Consensus 110 ii~~~g~ll 118 (488)
T KOG2325|consen 110 LIAIIGNLL 118 (488)
T ss_pred HHHHHHHHH
Confidence 666666544
No 202
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.92 E-value=0.0058 Score=50.81 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
.-.+.+-++-+.+... -....+......++..+.+++.||+|||+.++.+...+.++.++.+..
T Consensus 316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~ 379 (513)
T KOG0254|consen 316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVV 379 (513)
T ss_pred eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Confidence 3455666666666433 344445667777777788999999999999999999999998887764
No 203
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.90 E-value=0.0083 Score=51.87 Aligned_cols=79 Identities=8% Similarity=0.045 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCChhhhHHHHHHHHH-HHHHHHHHHHHHhhhhc--hHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYK-EVGAALHTDPIGLDSLTLFRSI-VQSSCYPLAAYLFVHHN--RAHVIALESNTEP 82 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l-~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~s 82 (117)
.++...++.++...-...+...+| .+++.+|+++.+.|.+.....+ +..++.++.|+++||++ .|+++.+++.+..
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~ 410 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST 410 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence 445555566666555554444444 5566799999999999987765 67899999999999999 4466666555544
Q ss_pred HHH
Q 039825 83 VPV 85 (117)
Q Consensus 83 l~t 85 (117)
+..
T Consensus 411 ~~~ 413 (633)
T TIGR00805 411 LSY 413 (633)
T ss_pred HHH
Confidence 443
No 204
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.01 Score=50.23 Aligned_cols=83 Identities=11% Similarity=-0.103 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 10 LVNLAGIMERADVSLLPGVYKEVGA-ALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 10 ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
...+.+++...-..+-+.+.....+ -.|.++.+.+........+..++.+++..+.+|+|+|+++..+.++|.++.++.
T Consensus 240 ~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 3333555555555555555444433 356666777778888888888889999999999999999999999999999998
Q ss_pred Hhcc
Q 039825 89 AETQ 92 (117)
Q Consensus 89 a~a~ 92 (117)
-+.+
T Consensus 320 ~f~~ 323 (467)
T COG2211 320 YFTP 323 (467)
T ss_pred Hhhc
Confidence 8887
No 205
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.001 Score=58.93 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
.+..+.++++..+.+.+-...++.++..|++-|+++.+|.|++.+.+-++..+...+..|.+-|..|.+.+..|.++.++
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 039825 84 PVPRKAE 90 (117)
Q Consensus 84 ~t~l~a~ 90 (117)
+++++++
T Consensus 175 gsll~al 181 (735)
T KOG3626|consen 175 GSLLFAL 181 (735)
T ss_pred HHHHHhC
Confidence 9999887
No 206
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.60 E-value=0.046 Score=43.04 Aligned_cols=44 Identities=11% Similarity=-0.084 Sum_probs=37.0
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVI 74 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl 74 (117)
.+++.+|.+..+.|++......+..+++++.|++.||+|++...
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 276 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ 276 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999999999999999999855433
No 207
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.02 Score=46.99 Aligned_cols=70 Identities=3% Similarity=-0.113 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE 77 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~ 77 (117)
+++..++..+.+..+-...++.. -.++.||+|+.+.|-+.+.-..-.++.+|+.|.++||+||+-..+.+
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 44444555544444333333322 24788999999999999887788889999999999999999555443
No 208
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=96.39 E-value=0.029 Score=47.34 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChh----hhHH-------------HHHHHHHHHHHHHHHHHHHhhhhch
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPI----GLDS-------------LTLFRSIVQSSCYPLAAYLFVHHNR 70 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~----q~G~-------------l~s~~~l~~~l~~p~~G~LaDR~GR 70 (117)
++.++.+..+.|+....+...+-....+++++.. |.-. =..+..+.-.-|..+.|++.||+||
T Consensus 331 lw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGR 410 (528)
T KOG0253|consen 331 LWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGR 410 (528)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcc
Confidence 3445666666666666665555444444444332 2111 0123456667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 039825 71 AHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 71 r~vl~~~~~~~sl~t~l~a~a~s 93 (117)
|+.++.+.+++++++++.-.+++
T Consensus 411 KkTMal~l~~f~iflfll~~c~~ 433 (528)
T KOG0253|consen 411 KKTMALSLILFGIFLFLLTTCKT 433 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988665533
No 209
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.30 E-value=0.11 Score=41.71 Aligned_cols=60 Identities=10% Similarity=-0.121 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
++.+.+.+++...-...+..-+|.+-++.|.+.. .|...+...+... +..|+++||..||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~ 253 (368)
T TIGR00903 194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARA 253 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhh
Confidence 3555555555555555555557777777787764 5555544444444 4457788877654
No 210
>PRK11462 putative transporter; Provisional
Probab=96.25 E-value=0.026 Score=46.55 Aligned_cols=67 Identities=7% Similarity=-0.118 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHH-HHHHHHHHHHHHHhcc
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIAL-ESNTEPVPVPRKAETQ 92 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~-~~~~~sl~t~l~a~a~ 92 (117)
..+.....+..|++++..|.+..+.-+-=++.-|+.|+++|| +||||..++ +....++++.++-..+
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence 356667788899999999999999999999999999999996 799876664 4455666665554443
No 211
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.033 Score=47.31 Aligned_cols=78 Identities=9% Similarity=-0.155 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIALESNTEP 82 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~~~~~~s 82 (117)
++..++.+++.......+..-+|-+-++ .|.|..|.+.+...+..+-.++.+++|+++|| +++|..+.....++.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888 67999999999999999999999999999999 889988888888877
Q ss_pred HHH
Q 039825 83 VPV 85 (117)
Q Consensus 83 l~t 85 (117)
+..
T Consensus 355 ~~g 357 (495)
T KOG2533|consen 355 IIG 357 (495)
T ss_pred HHH
Confidence 766
No 212
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.14 E-value=0.035 Score=47.13 Aligned_cols=89 Identities=8% Similarity=0.003 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
++||.+++++++-.+.|.+-.--.+.+--....-++ +....-|+..+|.+.+...+..+=|+.||+|-|....++...=
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 478888888888888888777777777777777788 7777888889999999999999999999999999999999888
Q ss_pred HHHHHHHHhc
Q 039825 82 PVPVPRKAET 91 (117)
Q Consensus 82 sl~t~l~a~a 91 (117)
.++..+-..+
T Consensus 120 ~iGa~Ir~is 129 (480)
T KOG2563|consen 120 GIGAWIRLIS 129 (480)
T ss_pred HHHHHHhhhc
Confidence 8887765554
No 213
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.58 E-value=0.23 Score=40.03 Aligned_cols=50 Identities=6% Similarity=-0.180 Sum_probs=36.5
Q ss_pred HHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825 24 LLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV 73 (117)
Q Consensus 24 il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v 73 (117)
......|.+ ++.+|.+..+.|+.......+..+++.+.+++.+|.++++.
T Consensus 236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 333445655 55579999999999888888888888999887755544443
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.40 E-value=0.11 Score=43.28 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 12 NLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 12 ~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
+...+-+.+|++ .+.-....=++-+.+..-.|.+.+..-+.=++.-.+..++.+|+|-|+.+.++..+.++=-.+++++
T Consensus 231 g~~~~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~ 309 (412)
T PF01306_consen 231 GVAAIYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA 309 (412)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh
Confidence 344577889988 4433333333334455668999999999999999999999999999999999999999999999999
Q ss_pred cccchhh
Q 039825 92 QSHRIPL 98 (117)
Q Consensus 92 ~s~~~~l 98 (117)
+|.+.+.
T Consensus 310 ~~~~~i~ 316 (412)
T PF01306_consen 310 TNPWVIS 316 (412)
T ss_dssp -SHHHHH
T ss_pred cchHHHH
Confidence 8877643
No 215
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=95.32 E-value=0.096 Score=44.12 Aligned_cols=84 Identities=14% Similarity=-0.001 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChh-hhHHHHHHH----HHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHTDPI-GLDSLTLFR----SIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~-q~G~l~s~~----~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+.....+-.+-.++-........+.....++-... ..+...... .+...+.+|..|.++||+|||..+...+..-
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence 33334433343444334444555555555543322 233333333 5777899999999999999999999887766
Q ss_pred HHHHHHHHh
Q 039825 82 PVPVPRKAE 90 (117)
Q Consensus 82 sl~t~l~a~ 90 (117)
-+......+
T Consensus 103 ~l~~~~~~~ 111 (463)
T KOG2816|consen 103 ILPALCLLF 111 (463)
T ss_pred HHhHHHHHH
Confidence 666555555
No 216
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.42 Score=40.27 Aligned_cols=65 Identities=11% Similarity=-0.074 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKE-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR 70 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR 70 (117)
..++.+.++++.+..-..++-.-.|. +++-+|.+-.+-|++.+...+.+.+...++|+++||.-+
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777766555555 466699999999999999999999999999999999866
No 217
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.01 E-value=0.17 Score=44.31 Aligned_cols=67 Identities=9% Similarity=-0.250 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhc
Q 039825 25 LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 25 l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
...+...+.+.+|++.++...+...+....-+...++|+++|+ +||++.+..+.+++.++..+.+++
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777899999999999998888888999999999997 699999999999999988887774
No 218
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.66 Score=38.67 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=54.3
Q ss_pred HHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhcc
Q 039825 21 DVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIALESNTEPVPVPRKAETQ 92 (117)
Q Consensus 21 D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl~t~l~a~a~ 92 (117)
-.+++-.=+|.+-.|-|+|..|.|++.+...+.+...+...-.+++| -++|+..+...+..-++...+.+++
T Consensus 223 ~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P 295 (395)
T COG2807 223 LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP 295 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 33455556999999999999999999999999999999999999995 4556555555554444444444443
No 219
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=94.57 E-value=0.049 Score=45.90 Aligned_cols=104 Identities=14% Similarity=0.007 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHH-HHhhhhchHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAA-YLFVHHNRAHVIALESNT 80 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G-~LaDR~GRr~vl~~~~~~ 80 (117)
+++..+.++..+.+....|..-.. ...-.++..|+|++.+.+.+.+.......+++.+.. .+.-.+|-|+++..|+..
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS 317 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence 345555556666666666653222 223466788999999999999988888888888887 999999999999999999
Q ss_pred HHHHHHHHHhccccchhhHhhcCCCC
Q 039825 81 EPVPVPRKAETQSHRIPLVALFPEPL 106 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~~~l~~~~~~~~ 106 (117)
-.+..+..+|+++.|.+......+++
T Consensus 318 ~~~~~~~~af~~~~w~~~~~~v~~~~ 343 (463)
T KOG2816|consen 318 EFLQLLLFAFATETWMMFAAGVVVAL 343 (463)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHh
Confidence 99999999999999997777665544
No 220
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.56 E-value=0.34 Score=40.80 Aligned_cols=49 Identities=8% Similarity=-0.103 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH-HHHHHHHHHHHHhc
Q 039825 43 LDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALE-SNTEPVPVPRKAET 91 (117)
Q Consensus 43 ~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~-~~~~sl~t~l~a~a 91 (117)
.+...++..+.+++..|+.|-++|+-|+||-+... ..+-++++.+..+.
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v 121 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV 121 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 46777899999999999999999999988666544 44455666666664
No 221
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=94.18 E-value=0.14 Score=42.47 Aligned_cols=55 Identities=4% Similarity=-0.142 Sum_probs=50.6
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 34 AALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 34 ~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
+.+|.++.+.|.+.....++..+++...+++.+|++.|+++.++.++..++....
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence 4689999999999999999999999999999999999999999999998877554
No 222
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.041 Score=46.86 Aligned_cols=69 Identities=10% Similarity=-0.096 Sum_probs=51.7
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHHHHH-HHHHHHHHHHHhccccchh
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIALES-NTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~~~~-~~~sl~t~l~a~a~s~~~~ 97 (117)
+++..++.|++..-.+.+-...-+.-.+.||+.|..+|| |||||.++... +.-+++.++.+++.+....
T Consensus 55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~ 128 (498)
T KOG0637|consen 55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLL 128 (498)
T ss_pred ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHH
Confidence 556677788888877777776777777899999999995 89998776544 4466666778887665543
No 223
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.86 E-value=1 Score=37.74 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALH-TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~-ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
|+....+.++|++.....-+--+..+-...+.. =|---.+.......+...+.+|..|.+.||..|.+++-.++.+=-+
T Consensus 1 ~~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 1 KRALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNL 80 (432)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHH
Confidence 356677888898888877777777666666652 2333344445566888889999999999999999998888766444
Q ss_pred HHHH
Q 039825 84 PVPR 87 (117)
Q Consensus 84 ~t~l 87 (117)
+.++
T Consensus 81 sv~~ 84 (432)
T PF06963_consen 81 SVAA 84 (432)
T ss_pred HHHH
Confidence 4333
No 224
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.80 E-value=1 Score=38.18 Aligned_cols=85 Identities=7% Similarity=-0.146 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCh-----hhhHHHHHHHHHHHHHH-HHHHHHHhhhhchHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDP-----IGLDSLTLFRSIVQSSC-YPLAAYLFVHHNRAHVIAL 76 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~-----~q~G~l~s~~~l~~~l~-~p~~G~LaDR~GRr~vl~~ 76 (117)
++++.++..++-.++-.+.. .++.++++++..+. .++.++-+...+..++. .++.+++++|++|++++-.
T Consensus 4 ~E~~k~~~~~l~fF~il~~Y----~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~ 79 (472)
T TIGR00769 4 HELKKFLPLFLMFFCILFNY----TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYT 79 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHH
Confidence 45555555555544433222 35889999987743 46888888887877777 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 039825 77 ESNTEPVPVPRKAET 91 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a 91 (117)
....|.+.-++.++.
T Consensus 80 ~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 80 VISPFLGFFALFAFV 94 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777775
No 225
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.27 Score=41.75 Aligned_cols=82 Identities=7% Similarity=-0.006 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh----hchHHHHH-HHHHHHHHHH
Q 039825 12 NLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH----HNRAHVIA-LESNTEPVPV 85 (117)
Q Consensus 12 ~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR----~GRr~vl~-~~~~~~sl~t 85 (117)
+++-+-..+...++. .++-...+.+|++++..|.+..+.-+-=++.-|+.|.+.|| +||+|..+ ++..-+++.+
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~ 97 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA 97 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence 344444545555444 45666678899999999999999999999999999999996 67776554 5557788888
Q ss_pred HHHHhccc
Q 039825 86 PRKAETQS 93 (117)
Q Consensus 86 ~l~a~a~s 93 (117)
.++-.+++
T Consensus 98 ~l~F~~p~ 105 (467)
T COG2211 98 VLLFITPD 105 (467)
T ss_pred HHHHcCCC
Confidence 88887775
No 226
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.42 E-value=0.35 Score=39.88 Aligned_cols=64 Identities=20% Similarity=0.122 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHHHHHHHHHHh
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-----RAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-----Rr~vl~~~~~~~sl~t~l~a~ 90 (117)
..+.+.+++++|++++|+..+.+...+-+ ..-|++|.++|-+- ||+=+.++.++-+++....+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~ 78 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL 78 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999998888877 56799999999984 554445555554444444444
No 227
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=92.96 E-value=0.13 Score=44.25 Aligned_cols=89 Identities=7% Similarity=-0.165 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHH----HHHHH-----HHHHHHHHHHHHHHhhhhchHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDS----LTLFR-----SIVQSSCYPLAAYLFVHHNRAHVIAL 76 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~----l~s~~-----~l~~~l~~p~~G~LaDR~GRr~vl~~ 76 (117)
+-+...+..|++-++-..-.+.....|-++.++.+++.-. -.+.. ..++..+.++..++.|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5566677788877776667777888888888888776554 11111 22233366677889999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 039825 77 ESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a~s~ 94 (117)
|..+.+++.+..++..|.
T Consensus 384 GF~~~~i~~~~~~~~y~~ 401 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQ 401 (538)
T ss_pred hHHHHHHHHHHHcCCccc
Confidence 999999999999988773
No 228
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=92.78 E-value=3.1 Score=34.14 Aligned_cols=76 Identities=7% Similarity=-0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 16 IMERADVSLLPGVYKEVGAALH-TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 16 ~~d~~D~~il~~~lp~i~~~~~-ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
++...-........+..-+|.| .+....|.+.+...++=.+.-...+++..|+|-|+++.++.+.|.+=-.+.++.
T Consensus 217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444455555 777778877777777777777889999999999999999999988877777776
No 229
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=92.71 E-value=1.5 Score=31.77 Aligned_cols=48 Identities=8% Similarity=-0.116 Sum_probs=36.8
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 039825 43 LDSLT-LFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAE 90 (117)
Q Consensus 43 ~G~l~-s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~ 90 (117)
.|... ++.....+++.++.+.+.+++|.|+.+.+|.+.|.+..+..-.
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~ 86 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY 86 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444 3455666778888899999999999999999999977755444
No 230
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=92.64 E-value=0.71 Score=39.00 Aligned_cols=53 Identities=2% Similarity=-0.240 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH-HHHHHHHHHHHhccc
Q 039825 41 IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES-NTEPVPVPRKAETQS 93 (117)
Q Consensus 41 ~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~-~~~sl~t~l~a~a~s 93 (117)
+-.|...++..+.+++.+|+.|.++|+.|+||...... .+-.+.+....++++
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 45777788999999999999999999999887665444 445555666777766
No 231
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=0.098 Score=44.16 Aligned_cols=68 Identities=15% Similarity=-0.145 Sum_probs=55.7
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHhccccchhhH
Q 039825 32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN--RAHVIALESNTEPVPVPRKAETQSHRIPLV 99 (117)
Q Consensus 32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G--Rr~vl~~~~~~~sl~t~l~a~a~s~~~~l~ 99 (117)
..|.+..+.-|+|....=..+.++++.++.|.++||++ |-..-..+++..+......-+++++.++.+
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~v 366 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWV 366 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhh
Confidence 45567745559999988889999999999999999999 866666777888888888888888887544
No 232
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.08 E-value=0.0015 Score=52.32 Aligned_cols=83 Identities=10% Similarity=-0.048 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
++.+..+.+..+........+....+.+.+..+.+.. -.......+...++.++..++.||+|||+++..+..+-++.
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAIC 329 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 4444444444443333333444456777777887776 11112334555567777789999999999999988887777
Q ss_pred HHHHH
Q 039825 85 VPRKA 89 (117)
Q Consensus 85 t~l~a 89 (117)
....+
T Consensus 330 ~~~~~ 334 (451)
T PF00083_consen 330 SLILG 334 (451)
T ss_pred ccccc
Confidence 76664
No 233
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=91.88 E-value=1.8 Score=36.26 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHH-------HHHHHHHHHHHHH
Q 039825 44 DSLTLFRSIVQSSCYPLAAYLFVHHNRAHV-------IALESNTEPVPVP 86 (117)
Q Consensus 44 G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v-------l~~~~~~~sl~t~ 86 (117)
+++.+...+...+.+|+.|++.||+|+|+. +..|.++-+++.+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 445555667788999999999999999973 6777777665553
No 234
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.00 E-value=0.079 Score=43.34 Aligned_cols=64 Identities=6% Similarity=-0.096 Sum_probs=48.8
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
+-+..+....|+|.+.-+..-...+.+.+.|-|+||-|||+.-+.-++.|.+.+ ++-.+|.|..
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkV 126 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKV 126 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEE
Confidence 345577788899999988888888999999999999999998776666666654 3334455544
No 235
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=90.56 E-value=9.6 Score=32.19 Aligned_cols=81 Identities=6% Similarity=-0.140 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825 16 IMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 16 ~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
++-.--+......++...+| .|++..|.+...+.+..+..+|-...-++..|+.-.|++++..+.--+-.+..+++.|+
T Consensus 246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~ 325 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV 325 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 33333334444445555555 89999999999999999999999888899999999999998887666666667777775
Q ss_pred ch
Q 039825 95 RI 96 (117)
Q Consensus 95 ~~ 96 (117)
..
T Consensus 326 v~ 327 (422)
T COG0738 326 VA 327 (422)
T ss_pred HH
Confidence 54
No 236
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=89.05 E-value=7.4 Score=33.79 Aligned_cols=99 Identities=17% Similarity=0.066 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADV-SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIALESNT 80 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~-~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~~~~~ 80 (117)
+.|+....+...-.++.+-. .+..-++..+..++|.+..+..-.++.+.-.+.......++++|-| ||-+.+.++.++
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34554444333333333333 2346778999999999999999999999999999999999999975 777999999988
Q ss_pred HHHHHHHHHhccccchhhHhhcCCC
Q 039825 81 EPVPVPRKAETQSHRIPLVALFPEP 105 (117)
Q Consensus 81 ~sl~t~l~a~a~s~~~~l~~~~~~~ 105 (117)
+-++..+..++ ..+..+.|++
T Consensus 114 ~~~G~~~lt~~----a~~~~l~p~~ 134 (571)
T KOG1237|consen 114 SLLGLFGLTLS----AMIPALLPFM 134 (571)
T ss_pred HHHHHHHHHHH----HHhhhcCCcc
Confidence 88885554443 3344444444
No 237
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=88.80 E-value=7 Score=32.37 Aligned_cols=75 Identities=8% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCh----hhhHHHHHHHHHHHHHHHHHHHHHhhhhch-----HHH--HHHHHHHHHHH
Q 039825 16 IMERADVSLLPGVYKEVGAALHTDP----IGLDSLTLFRSIVQSSCYPLAAYLFVHHNR-----AHV--IALESNTEPVP 84 (117)
Q Consensus 16 ~~d~~D~~il~~~lp~i~~~~~ls~----~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR-----r~v--l~~~~~~~sl~ 84 (117)
++.....|.-+.+....+++.+.+. ...+++.+...+...+.+|+..++--|.+| +.. +.+|.++.+++
T Consensus 283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~ 362 (475)
T TIGR00924 283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS 362 (475)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 3344444544443334444444332 237788899999999999886654333333 333 37788888888
Q ss_pred HHHHHh
Q 039825 85 VPRKAE 90 (117)
Q Consensus 85 t~l~a~ 90 (117)
.+..++
T Consensus 363 ~~~~~~ 368 (475)
T TIGR00924 363 FLTFAA 368 (475)
T ss_pred HHHHHH
Confidence 777665
No 238
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=88.58 E-value=7 Score=32.65 Aligned_cols=52 Identities=6% Similarity=-0.135 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825 43 LDSLTLFRSIVQSSCYPLA----AYLFVHHNRAHVIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 43 ~G~l~s~~~l~~~l~~p~~----G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
.+++.+...+...+.+|+. +++.||++..+.+.+|.++.+++.+..++++++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~ 373 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF 373 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667776666666666 777777777799999999999998887777553
No 239
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=87.12 E-value=9 Score=33.62 Aligned_cols=87 Identities=8% Similarity=0.018 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhCCCh---hhhHHHHHHHHHHHHHHHHHHHHHhhhhchH-HHHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLPGVYKEVGA-ALHTDP---IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA-HVIALESN 79 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~~~lp~i~~-~~~ls~---~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr-~vl~~~~~ 79 (117)
+|.+....+..++.++-...+....|.... -++-+. .+.|++.....++...++.+.|.+.-+++|- +.+.++..
T Consensus 309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~ 388 (599)
T PF06609_consen 309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV 388 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 355566556666666666666666666544 344444 3678888889999999999999999887765 55557766
Q ss_pred HHHHHHHHHHhc
Q 039825 80 TEPVPVPRKAET 91 (117)
Q Consensus 80 ~~sl~t~l~a~a 91 (117)
+..++..+++.+
T Consensus 389 ~~ta~~Gama~~ 400 (599)
T PF06609_consen 389 LMTAFCGAMAAV 400 (599)
T ss_pred HHHHHHHHHHHc
Confidence 666655555443
No 240
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=86.92 E-value=10 Score=31.24 Aligned_cols=67 Identities=9% Similarity=-0.127 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccch
Q 039825 27 GVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRI 96 (117)
Q Consensus 27 ~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~ 96 (117)
.-+......+|.+. ..................+.+.||+|||.....+..+-+++.+..++..+...
T Consensus 339 ~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (521)
T KOG0255|consen 339 YGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG 405 (521)
T ss_pred HhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 33444444455443 33333333355555666689999999999999999999999999998866544
No 241
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=85.50 E-value=10 Score=31.83 Aligned_cols=59 Identities=15% Similarity=0.021 Sum_probs=46.6
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHH
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV-HHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD-R~GRr~vl~~~~~~~sl~t~l 87 (117)
-|+=.+-||+|..|-..+......+..++-...|++.. |.|.++...+++.+-.++..+
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 44556779999999999999999999999999999988 666667766666655554443
No 242
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=85.38 E-value=7.3 Score=24.75 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 41 IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 41 ~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
...|...+...++..++....|.+.|..|.+..+......
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 3456666778899999999999999999987766654443
No 243
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=85.10 E-value=12 Score=29.19 Aligned_cols=47 Identities=13% Similarity=-0.092 Sum_probs=30.4
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 039825 32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALES 78 (117)
Q Consensus 32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~ 78 (117)
..++++-...+.+.+.....++.+++.++.|.++|++|.+..+...+
T Consensus 255 a~~~~~~~~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 255 ALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHhhhhhhhhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 33444322233343445666778888889999999999877655433
No 244
>PRK03612 spermidine synthase; Provisional
Probab=84.77 E-value=19 Score=30.67 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=32.4
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 32 VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 32 i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
+.--+|-+..+.+.+++++..++++|+.+.|++.++--|+
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~ 80 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG 80 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444688888999999999999999999999987544444
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=81.94 E-value=27 Score=29.30 Aligned_cols=74 Identities=8% Similarity=-0.108 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEP 82 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~s 82 (117)
++.+++..+=|+.............++-|.++.++|.+=+...+.-..+.....++..|+|-.|.-.+++.+-.
T Consensus 261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~ 334 (432)
T PF06963_consen 261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQW 334 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44455555555554444445445555559999999999999999999999999999999999999888865533
No 246
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=79.43 E-value=3.3 Score=35.34 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhh-----hhchHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFV-----HHNRAHVIA 75 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaD-----R~GRr~vl~ 75 (117)
++.++-+.++..-+.+.++-..... .+|.+-+.=|.|.++.|....++. =...-.+|..+.| |+||||--+
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence 3445556667777888888888888 899999999999999887664331 1123457888999 999997533
No 247
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=78.94 E-value=11 Score=32.38 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=45.9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 42 GLDSLT-LFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 42 q~G~l~-s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
++|.+. ..++....+.+....++.||+|-|+++..+...+++++.+.+...+.....
T Consensus 332 ~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~ 389 (498)
T KOG0637|consen 332 RMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVL 389 (498)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHH
Confidence 456665 367888899999999999999988888888888999999888776665543
No 248
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=78.10 E-value=6 Score=33.17 Aligned_cols=45 Identities=11% Similarity=-0.090 Sum_probs=36.9
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc-----hHHHHHH
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN-----RAHVIAL 76 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G-----Rr~vl~~ 76 (117)
-+..|++++..-.|.+++...+.+ ...+.+|+.+|+++ ||...++
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~ 54 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIW 54 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhH
Confidence 356789999888888888877766 57999999999999 8866654
No 249
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=75.19 E-value=7 Score=32.03 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHH---------HhhhhchHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAY---------LFVHHNRAHV 73 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~---------LaDR~GRr~v 73 (117)
+.-+.||+.|++....--.-+--..+.-++++..-..+..+...+-++..|+.|. -.||+|||+.
T Consensus 20 f~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 20 FAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred eeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 4557899999988774433333344557888888888888888888888888864 4689999864
No 250
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=74.19 E-value=4.9 Score=35.36 Aligned_cols=89 Identities=10% Similarity=-0.037 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 039825 10 LVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 10 ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a 89 (117)
.+..++++...+..+.+++.=.+++ .+-+++-.|.+......+=.+..++.+++..|+|+.+++.+++....+=.+..+
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 4556667777777777777666654 556777788777677777778889999999999999999999999999888888
Q ss_pred hccccchhhH
Q 039825 90 ETQSHRIPLV 99 (117)
Q Consensus 90 ~a~s~~~~l~ 99 (117)
+.+|.|..+.
T Consensus 455 ~L~n~W~vLP 464 (618)
T KOG3762|consen 455 YLQNPWMVLP 464 (618)
T ss_pred HhcCchheee
Confidence 8899988653
No 251
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=69.02 E-value=42 Score=28.74 Aligned_cols=84 Identities=13% Similarity=-0.046 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAALHT-DPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~l-s~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t 85 (117)
..+.+.+||++....-=.-.+...-...+++= |..-...-...=...+.+.+|+.|-..|+..|+|++...+.+=-++.
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 34567778877655433333333333333332 11111111123356677889999999999999999998887755555
Q ss_pred HHHHh
Q 039825 86 PRKAE 90 (117)
Q Consensus 86 ~l~a~ 90 (117)
.++|-
T Consensus 108 ~vagg 112 (503)
T KOG2601|consen 108 IVAGG 112 (503)
T ss_pred HHHHH
Confidence 55543
No 252
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=68.59 E-value=1.6 Score=37.34 Aligned_cols=68 Identities=18% Similarity=0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCChhhhHHHHHHH-HHHHHHHHHHHHHHhhhhchH
Q 039825 4 ENLTMALVNLAGIMERADVSLLP-GVYKEVGAALHTDPIGLDSLTLFR-SIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~ls~~q~G~l~s~~-~l~~~l~~p~~G~LaDR~GRr 71 (117)
++.++....++..++.+-..-+. +.-+.++.+|++++++.+.+..+. .-+.++|..++|++..|+.-+
T Consensus 303 ~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 303 TNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence 34566777778777777665444 455677889999999999999654 447888999999999998543
No 253
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=67.63 E-value=75 Score=27.14 Aligned_cols=85 Identities=7% Similarity=-0.105 Sum_probs=51.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh----HH---------------HHHHHHHhC---CChhhhHHHHHHHHHHHHHHH
Q 039825 1 MKSENLTMALVNLAGIMERADVSLLP----GV---------------YKEVGAALH---TDPIGLDSLTLFRSIVQSSCY 58 (117)
Q Consensus 1 ~~~r~~~l~ll~l~~~~d~~D~~il~----~~---------------lp~i~~~~~---ls~~q~G~l~s~~~l~~~l~~ 58 (117)
.|+||-++.++.++..+.+.-...-. ++ ..++..|-. -.+-.++.+.+++.++..+|-
T Consensus 94 ~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGP 173 (451)
T KOG2615|consen 94 RYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGP 173 (451)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcc
Confidence 37899998888887776554332111 11 112222211 112235666778999999999
Q ss_pred HHHHHHhh---hhchHHHHHHHHHHHHHHH
Q 039825 59 PLAAYLFV---HHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 59 p~~G~LaD---R~GRr~vl~~~~~~~sl~t 85 (117)
.++|+++. .+|+-+-...+.+++..+.
T Consensus 174 mIGgyla~f~~~~g~~p~alP~~~v~i~a~ 203 (451)
T KOG2615|consen 174 MIGGYLAQFSSISGSYPFALPCLLVFILAA 203 (451)
T ss_pred hhhhHHHhhHhhhccCchHHHHHHHHHHHH
Confidence 99999987 6666665555655554444
No 254
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=66.36 E-value=56 Score=28.15 Aligned_cols=72 Identities=3% Similarity=-0.094 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA 75 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~ 75 (117)
+||.-++.+ +.+-++..-...++.++....+.-|-+....|........+-.+++...|.++||...-+-..
T Consensus 264 ~n~~F~il~--~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~ 335 (480)
T KOG2563|consen 264 KNRQFIILA--ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTT 335 (480)
T ss_pred cCccHHHHH--HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 344444333 333334433345555555455556777788999999999999999999999999988655443
No 255
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=64.34 E-value=35 Score=28.49 Aligned_cols=40 Identities=3% Similarity=-0.046 Sum_probs=31.4
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 039825 30 KEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNR 70 (117)
Q Consensus 30 p~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GR 70 (117)
+.+..|..+. +..|.+.++.+++.++...+.|.++|.-|.
T Consensus 378 a~~vpE~qLG-Taygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 378 ASLVPEEQLG-TAYGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred hhhCCHHHhc-chHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 3333343333 568899999999999999999999999885
No 256
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=64.03 E-value=55 Score=27.51 Aligned_cols=87 Identities=9% Similarity=-0.141 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHH-HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 7 TMALVNLAGIMERADVSLLPGVYKEVGAA-LHTDPIGLDSLT-LFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 7 ~l~ll~l~~~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~-s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
++.+|..|.+ -.+. =.-|++.|.+.+. -|++..|+--=+ -...-.+.....+...+.|..+-|++++++.+-.-+.
T Consensus 7 ~~llc~~gf~-~~fr-PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t 84 (412)
T PF01770_consen 7 TLLLCLFGFF-KEFR-PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIIT 84 (412)
T ss_pred HHHHHHHHHH-HhcC-CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444433 3332 3567888899887 799999886444 4666777788889999999999999999887665555
Q ss_pred HHHHHhccccc
Q 039825 85 VPRKAETQSHR 95 (117)
Q Consensus 85 t~l~a~a~s~~ 95 (117)
..+.-+.+|..
T Consensus 85 ~~lll~~~sv~ 95 (412)
T PF01770_consen 85 WLLLLFGTSVL 95 (412)
T ss_pred HHHHHHHCcHH
Confidence 55555545443
No 257
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=63.74 E-value=12 Score=22.13 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHhhcCCCCCCCCCC
Q 039825 75 ALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDP 112 (117)
Q Consensus 75 ~~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~~~~~~ 112 (117)
.+++.++++-...+|++ +-+.|-.|-|+-|||
T Consensus 9 ~~~i~i~~lL~~~Tgya------iYtaFGppSk~LrDP 40 (46)
T PRK13183 9 SLAITILAILLALTGFG------IYTAFGPPSKELDDP 40 (46)
T ss_pred HHHHHHHHHHHHHhhhe------eeeccCCcccccCCc
Confidence 34444444444445553 446778889999998
No 258
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=63.71 E-value=27 Score=28.77 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHHH--HHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHH
Q 039825 13 LAGIMERAD--VSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAA 62 (117)
Q Consensus 13 l~~~~d~~D--~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G 62 (117)
++.++|.-| ...+.++++++.+++|.++.+.|.......-.-...+|+.+
T Consensus 308 lg~~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~~ 359 (388)
T TIGR00771 308 MALITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIAG 359 (388)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHHH
Confidence 455554333 33566788899999999999999998765544455566655
No 259
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=62.38 E-value=65 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 48 LFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 48 s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
....++..+++.+.|.+.|+.+-+..+.++..+
T Consensus 131 ~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 131 GVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred HHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 456788888899999999999998887665433
No 260
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=61.97 E-value=67 Score=27.36 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 42 GLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 42 q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
..++.....+++..++..+.|++.+++|-+..+..+...
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 466777777889999999999999999988877665443
No 261
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=60.51 E-value=33 Score=22.49 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhhch-------HHHHHHHHHHHHHHHHHHHhccc
Q 039825 51 SIVQSSCYPLAAYLFVHHNR-------AHVIALESNTEPVPVPRKAETQS 93 (117)
Q Consensus 51 ~l~~~l~~p~~G~LaDR~GR-------r~vl~~~~~~~sl~t~l~a~a~s 93 (117)
..+.+..+|.++++.+|..+ ++.+..+-++-..+..++++.+|
T Consensus 28 ~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 28 WAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888876 55666666666666777777544
No 262
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.14 E-value=80 Score=26.93 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH---HhCCChhhhHHHH-HHHHHHHHHHHHHHHHHh---hhhchHHHHHHHHHHHHHHH
Q 039825 13 LAGIMERADVSLLPGVYKEVGA---ALHTDPIGLDSLT-LFRSIVQSSCYPLAAYLF---VHHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 13 l~~~~d~~D~~il~~~lp~i~~---~~~ls~~q~G~l~-s~~~l~~~l~~p~~G~La---DR~GRr~vl~~~~~~~sl~t 85 (117)
...+..++.+....-+.|.-.. ..+.+...+-.+. .....++.+++..++.++ +|+||++.+..+..+.-+..
T Consensus 247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~ 326 (461)
T KOG3098|consen 247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF 326 (461)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence 3334455666644444443322 2233333332222 234555555666666666 67899999998888877776
Q ss_pred HHHHhccccchhhHhhcCCCCCCCCCCCC
Q 039825 86 PRKAETQSHRIPLVALFPEPLKDTRDPRL 114 (117)
Q Consensus 86 ~l~a~a~s~~~~l~~~~~~~~~~~~~~~~ 114 (117)
++.-...... .|+++|.++.+
T Consensus 327 ~li~l~~p~d--------ap~~~t~~~~~ 347 (461)
T KOG3098|consen 327 LLIHLSFPND--------APLRPTDSPPL 347 (461)
T ss_pred HHHhcccccc--------CCCCCCccccc
Confidence 6655532222 34677766643
No 263
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.17 E-value=24 Score=29.63 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAY 63 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~ 63 (117)
..+..+++++|+++.. ++-+++.++.+.+|++..-.|.+.....=+.+ ..|++|.
T Consensus 340 ~~iF~LgffldffEiafIivPllaPva~~lgIDliwfGVll~~NlQtSF-l~PPfgf 395 (447)
T COG4664 340 ILIFFLGFFLDFFEIAFIIVPLLAPVADKLGIDLIWFGVLLGVNLQTSF-LHPPFGF 395 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHhhhhhc-cCCCchh
Confidence 3567889999999988 55577888999999999999999877655543 4444443
No 264
>CHL00020 psbN photosystem II protein N
Probab=58.48 E-value=12 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhccccchhhHhhcCCCCCCCCCC
Q 039825 76 LESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDP 112 (117)
Q Consensus 76 ~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~~~~~~ 112 (117)
+++.++++-...++++ +-+.|-.|-|+-|||
T Consensus 7 ~~i~i~~ll~~~Tgy~------iYtaFGppSk~LrDP 37 (43)
T CHL00020 7 VAIFISGLLVSFTGYA------LYTAFGQPSKQLRDP 37 (43)
T ss_pred HHHHHHHHHHHhhhee------eeeccCCchhccCCc
Confidence 4444555444445553 445677889999998
No 265
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.35 E-value=66 Score=29.16 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHH-HHHHHHHHHHHHHHHHhhhhchH--HHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTL-FRSIVQSSCYPLAAYLFVHHNRA--HVIALESNT 80 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s-~~~l~~~l~~p~~G~LaDR~GRr--~vl~~~~~~ 80 (117)
.+..+..++..++..-.. ...++-+.|++.|+.+.++...+.. +..-+.++|..++|++.-||.-+ .+..+.++.
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence 456677777777776665 4445566778899999999999994 66677888889999999887543 444443333
No 266
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=53.10 E-value=38 Score=18.73 Aligned_cols=29 Identities=10% Similarity=-0.099 Sum_probs=20.2
Q ss_pred ChhhhHHHH----HHHHHHHHHHHHHHHHHhhh
Q 039825 39 DPIGLDSLT----LFRSIVQSSCYPLAAYLFVH 67 (117)
Q Consensus 39 s~~q~G~l~----s~~~l~~~l~~p~~G~LaDR 67 (117)
+.+|+|... .+..++..+.+.+.||+-+|
T Consensus 2 TLaqlg~~~WhDLAAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 2 TLAQLGIAFWHDLAAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred cHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhc
Confidence 456777665 45667777778888888665
No 267
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=51.82 E-value=19 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchH
Q 039825 49 FRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 49 ~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
.....+.+.+.+.|.+.||..||
T Consensus 83 ~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 45667778888999999999886
No 268
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=50.27 E-value=1.7e+02 Score=25.45 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCChh---hhHHHHHHHHH-HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 039825 28 VYKEVGAALHTDPI---GLDSLTLFRSI-VQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAET 91 (117)
Q Consensus 28 ~lp~i~~~~~ls~~---q~G~l~s~~~l-~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a 91 (117)
++..+++++..+.. .+..+=++.-+ +..+..++.+++.+++.|.+++-.-+..|+..-+++|+.
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888877633 44555566666 677888999999999999999999999999999998884
No 269
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=49.10 E-value=63 Score=20.08 Aligned_cols=53 Identities=13% Similarity=-0.048 Sum_probs=44.8
Q ss_pred HHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 039825 19 RADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 19 ~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
.++...+....|.+.--+|.+..|.+.+....++...+=..+.-++-||+=+|
T Consensus 12 ~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 12 LFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35567778888999999999999999999888888888888999999997654
No 270
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=46.14 E-value=92 Score=21.13 Aligned_cols=34 Identities=6% Similarity=-0.127 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHH
Q 039825 52 IVQSSCYPLAAYLFVH-HNRAHVIALESNTEPVPV 85 (117)
Q Consensus 52 l~~~l~~p~~G~LaDR-~GRr~vl~~~~~~~sl~t 85 (117)
..-.+.+.+.|++.|+ ||-+..+.+.+++.+++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3334445566666665 676655555555555554
No 271
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=44.30 E-value=66 Score=27.07 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAA 62 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G 62 (117)
.++-+|.++|..-.. ++.+++-++.+++|+++.+.|.+.....- .....|+.|
T Consensus 322 ~~lvlGmfld~~a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~-ig~iTPPvG 375 (425)
T PRK15060 322 AIMVVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGVMFIINCS-IGLITPPVG 375 (425)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HhCCCCCcc
Confidence 344566677776666 34456666777799999999998876443 444455554
No 272
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=43.70 E-value=34 Score=19.89 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=11.1
Q ss_pred hHhhcCCCCCCCCCC
Q 039825 98 LVALFPEPLKDTRDP 112 (117)
Q Consensus 98 l~~~~~~~~~~~~~~ 112 (117)
+-+.|-.|-|.-|||
T Consensus 23 iYtaFGppSk~LrDP 37 (43)
T PF02468_consen 23 IYTAFGPPSKELRDP 37 (43)
T ss_pred hhheeCCCccccCCc
Confidence 445676788888888
No 273
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=43.59 E-value=1.1e+02 Score=21.40 Aligned_cols=59 Identities=8% Similarity=-0.134 Sum_probs=35.9
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHHHHHHHHHHHH
Q 039825 31 EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH---HNRAHVIALESNTEPVPVPRKA 89 (117)
Q Consensus 31 ~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR---~GRr~vl~~~~~~~sl~t~l~a 89 (117)
.-..|++......+++.....+..+++....+...=| -.+++.....+.+++++....+
T Consensus 26 ~~iS~Lg~~~~p~~~~~~~~~~~~g~~~~~~a~~l~~~~~~~~~~~~~~ll~~~g~~~i~~g 87 (184)
T PF06197_consen 26 QYISDLGATGSPYAWLFNIGFILSGVLFLAFAVGLFRARRRRLSRWGAVLLALAGLGLILVG 87 (184)
T ss_pred hHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 3345677766778888888888888887777765533 3333444444455555544333
No 274
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=41.80 E-value=1.3e+02 Score=25.23 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=37.2
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 37 HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 37 ~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
++.-.++|.+...+.++-++++-++|.|+.++||-..+..+-++
T Consensus 306 ~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv 349 (390)
T KOG3097|consen 306 ALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVV 349 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 34445688888999999999999999999999999988876654
No 275
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=39.76 E-value=38 Score=20.62 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHhhcCCCCCCCCCCCC
Q 039825 75 ALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRDPRL 114 (117)
Q Consensus 75 ~~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~~~~~~~~ 114 (117)
..+++.|++..+.-+.++| +|-.+|.|+||.
T Consensus 16 ag~iv~ygv~k~~~a~~ns---------~E~~NDPRNP~~ 46 (54)
T PF04911_consen 16 AGAIVYYGVNKAQNAMMNS---------DEFKNDPRNPRA 46 (54)
T ss_pred HHHHHHHHHHHHHHHHhcC---------HHHhcCCCChhh
Confidence 3455667777766666554 667788888874
No 276
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=38.47 E-value=92 Score=22.27 Aligned_cols=23 Identities=9% Similarity=-0.146 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhchH
Q 039825 49 FRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 49 ~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
=|.+++.+.+.+.|++.+|..++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc
Confidence 47888999999999999998875
No 277
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=36.72 E-value=1.7e+02 Score=21.46 Aligned_cols=46 Identities=7% Similarity=-0.161 Sum_probs=26.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhccccchhhHhhcCCCCCCCCC
Q 039825 66 VHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLKDTRD 111 (117)
Q Consensus 66 DR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~~~~~ 111 (117)
.|.++|..+..++.+..+...+.....+.......-++++-.++.|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (223)
T PF07786_consen 119 LRLPRRALLILALLLLALSWLLSGPVFGPPWLLWLGLSSRNFFSNG 164 (223)
T ss_pred HhcchhHHHHHHHHHHHHHHHHhhhhcCchHHHHhcccccCCCcCC
Confidence 7899998888877777766655554333333333334443334443
No 278
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.23 E-value=1e+02 Score=21.61 Aligned_cols=30 Identities=7% Similarity=-0.195 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh-chHH
Q 039825 43 LDSLTLFRSIVQSSCYPLAAYLFVHH-NRAH 72 (117)
Q Consensus 43 ~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~ 72 (117)
.+.=.++=+++-.+.+...||+.||| |.++
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsP 74 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSP 74 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34444556777777888999999998 4443
No 279
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=36.01 E-value=49 Score=21.66 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhc----hHHHHH
Q 039825 56 SCYPLAAYLFVHHN----RAHVIA 75 (117)
Q Consensus 56 l~~p~~G~LaDR~G----Rr~vl~ 75 (117)
+.+-+..+++||.| +||+=.
T Consensus 11 ~lgG~IA~~GD~iG~kvGKkrlsl 34 (79)
T PF11283_consen 11 LLGGLIAYLGDRIGSKVGKKRLSL 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhh
Confidence 33444556666555 556544
No 280
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=34.84 E-value=1.4e+02 Score=22.32 Aligned_cols=22 Identities=14% Similarity=-0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhch
Q 039825 49 FRSIVQSSCYPLAAYLFVHHNR 70 (117)
Q Consensus 49 ~~~l~~~l~~p~~G~LaDR~GR 70 (117)
=|.+++-+.+.+.|+++||.-+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc
Confidence 3678888999999999999996
No 281
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=34.70 E-value=1.3e+02 Score=19.54 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC-ChhhhHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHT-DPIGLDSLTL 48 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~l-s~~q~G~l~s 48 (117)
++|++..+.+.+..+.-++-..++....|++...--. +....|++..
T Consensus 12 r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g 59 (91)
T PF04341_consen 12 RRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLG 59 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHH
Confidence 4567777777777777887778888888888765433 3455666653
No 282
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=33.24 E-value=80 Score=17.67 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHH-------HHHHHHHhCCChhh
Q 039825 17 MERADVSLLPGV-------YKEVGAALHTDPIG 42 (117)
Q Consensus 17 ~d~~D~~il~~~-------lp~i~~~~~ls~~q 42 (117)
+|.+|+.++..+ +..|.++.|+|.++
T Consensus 1 lD~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~ 33 (42)
T PF13404_consen 1 LDELDRKILRLLQEDGRRSYAELAEELGLSEST 33 (42)
T ss_dssp --HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHH
T ss_pred CCHHHHHHHHHHHHcCCccHHHHHHHHCcCHHH
Confidence 467788877664 44566666666544
No 283
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=32.89 E-value=1.6e+02 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 039825 23 SLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYL 64 (117)
Q Consensus 23 ~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~L 64 (117)
..+.++++++.+++|.++.+++..........-..+|..+.+
T Consensus 373 ~af~pi~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPvs~~i 414 (455)
T PRK10654 373 YAFVELIPKLAHSSGINPAYLTIPMLQASNLGRTISPVSGVV 414 (455)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcchhhH
Confidence 567788999999999999999886644333333345766643
No 284
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=31.43 E-value=1.4e+02 Score=26.01 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhch--HHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 42 GLDSLTLFRSIVQSSCYPLAAYLFVHHNR--AHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 42 q~G~l~s~~~l~~~l~~p~~G~LaDR~GR--r~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
-=|.+-.+..+..++.+...|++-.++.| ..++.+..++.+...++++.++|.+.-.
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y 357 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLY 357 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHH
Confidence 34667777788888999999999887765 3555555566777788899988887643
No 285
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=31.22 E-value=77 Score=22.28 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccccchhhHhhcCCCCC
Q 039825 69 NRAHVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLK 107 (117)
Q Consensus 69 GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~ 107 (117)
++|..+.+.+...+++.-.+|+..|||..-.-=.|.|+-
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKPlC 43 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFSTTALLSSYWCEGTQKVPKPLC 43 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccccceecCCCCC
Confidence 345677778888888888899999999988888888875
No 286
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=3.3e+02 Score=23.23 Aligned_cols=53 Identities=4% Similarity=-0.185 Sum_probs=41.7
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcccc
Q 039825 42 GLDSL-TLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSH 94 (117)
Q Consensus 42 q~G~l-~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~ 94 (117)
..|.. .++-...+.++..+.+-+.|+.|-|+.++++...|....+..=+-++|
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y 103 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSY 103 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchH
Confidence 34444 355667778899999999999999999999999999887766664433
No 287
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=30.57 E-value=85 Score=26.23 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAA 62 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G 62 (117)
.++.+|.++|..-.. ++.+++-++.+++|+++.+.|.+... ++......|+.|
T Consensus 276 ~llvvG~fmd~~a~ilil~Pil~Pi~~~~GIDPvhfGvv~v~-Nl~IGliTPPvG 329 (379)
T COG1593 276 LLLVVGTFMDLTAAILILTPILLPIAAALGIDPVHFGVVFVL-NLSIGLITPPVG 329 (379)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCceeeHHHHHH-HHHhhCCCCCcc
Confidence 345567777765554 55677778888899999999998855 444445556555
No 288
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=29.41 E-value=3e+02 Score=22.14 Aligned_cols=99 Identities=20% Similarity=0.095 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH---HNRAHVIALESN 79 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR---~GRr~vl~~~~~ 79 (117)
+|-+..+++.+++++--+-...++-.+.-+.+.+|...-..+++.+..+. .+..+-.++ ||.||.=.++.+
T Consensus 22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~------~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAI------KLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHH------HHhcCCCCCCCCccHhHHHHHHHH
Confidence 33444455566666666666677777777888887655444444433332 233444444 677766666555
Q ss_pred HHHHHHHHHHhccccchhhHhhcCCCCC
Q 039825 80 TEPVPVPRKAETQSHRIPLVALFPEPLK 107 (117)
Q Consensus 80 ~~sl~t~l~a~a~s~~~~l~~~~~~~~~ 107 (117)
+=++..+..++.-=++.+-=+.-|+|..
T Consensus 96 ~nav~Li~~s~~I~~EAi~R~~~P~~i~ 123 (296)
T COG1230 96 LNALLLIVVSLLILWEAIQRLLAPPPIH 123 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 5555544444422223233333355543
No 289
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=28.88 E-value=3.5e+02 Score=22.75 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=44.0
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH--HHHHHHHHHHHHHhccccchhh
Q 039825 37 HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIAL--ESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 37 ~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~--~~~~~sl~t~l~a~a~s~~~~l 98 (117)
+-+..-=|.+-.+..+..++++...|++..++++-.-+.+ ..++-+...+++++++|.+...
T Consensus 281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y 344 (412)
T PF01770_consen 281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCY 344 (412)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444557888888899999999999999888877544443 3344555666778877777643
No 290
>PRK11469 hypothetical protein; Provisional
Probab=28.73 E-value=2.4e+02 Score=20.83 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHH-HHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYP-LAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p-~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
+...+++++.-+|.+-.. .-+.. .+.+.......+....+.....+. +..++..++|||.-+..|+++-.++
T Consensus 106 ~~~l~LaiAtSiDAlavG---i~~~~----~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iG 178 (188)
T PRK11469 106 WLLVTTAIATSLDAMAVG---VGLAF----LQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIG 178 (188)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666654433 22222 233444444444444444444444 4445677889988888888776665
Q ss_pred H
Q 039825 85 V 85 (117)
Q Consensus 85 t 85 (117)
.
T Consensus 179 i 179 (188)
T PRK11469 179 V 179 (188)
T ss_pred H
Confidence 4
No 291
>PRK02237 hypothetical protein; Provisional
Probab=28.22 E-value=1.9e+02 Score=20.05 Aligned_cols=32 Identities=6% Similarity=-0.140 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 039825 41 IGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH 72 (117)
Q Consensus 41 ~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~ 72 (117)
++.|-+..+|.-.+.+.+.+||+..|+.---+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~ 87 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDR 87 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCCh
Confidence 55899999999999999999999999875443
No 292
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=28.06 E-value=1.4e+02 Score=20.61 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 039825 40 PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAH 72 (117)
Q Consensus 40 ~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~ 72 (117)
+...|-+..+|.-.+.+.+.+||+..|+.--.+
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~ 85 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDR 85 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCcCCCh
Confidence 367899999999999999999999999876544
No 293
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=27.57 E-value=1.4e+02 Score=17.82 Aligned_cols=25 Identities=8% Similarity=-0.383 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHH
Q 039825 55 SSCYPLAAYLFVHHNRAHVIALESN 79 (117)
Q Consensus 55 ~l~~p~~G~LaDR~GRr~vl~~~~~ 79 (117)
.++..+..++.++++++.-.+.+++
T Consensus 38 ~~G~~~G~~~~~~~~~~~~~igg~i 62 (67)
T PF02659_consen 38 LLGLLLGRRLGRFIGSYAEWIGGII 62 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544444443
No 294
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=27.52 E-value=1.6e+02 Score=24.61 Aligned_cols=13 Identities=0% Similarity=-0.348 Sum_probs=6.6
Q ss_pred HHHHHHhCCChhh
Q 039825 30 KEVGAALHTDPIG 42 (117)
Q Consensus 30 p~i~~~~~ls~~q 42 (117)
|.++|++|++.++
T Consensus 145 ~~f~e~~G~~~a~ 157 (398)
T TIGR00210 145 PVFYDNYGFRNAT 157 (398)
T ss_pred HHHHHHcCchhHH
Confidence 3344446666553
No 295
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=27.49 E-value=4.4e+02 Score=23.44 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=64.8
Q ss_pred HHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchhh
Q 039825 19 RADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIPL 98 (117)
Q Consensus 19 ~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l 98 (117)
+.-..-+-.++..+..-+++|++-+|+- +.+++-.+|=.++-.-.-|.|..++-..++..=.+...+.++. .+..+
T Consensus 460 ~~~A~Eiv~vl~~lG~I~~ls~siLGLT--v~AWgNSiGDLIAniavak~G~p~MAmaac~GGplfn~lvg~G--~~~~i 535 (605)
T KOG2399|consen 460 YLIANELVAVLTMLGVIFGLSPSILGLT--VLAWGNSIGDLIANIAVAKQGYPRMAMAACIGGPLFNLLVGLG--LPLVI 535 (605)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH--HHHHhccHHHHHHHHHHHHcCcHHHHHHHHhhhHHHHHHHHhh--HHHHH
Confidence 4444556677899999999999988874 5778888888888888889999999988888777777777773 33333
Q ss_pred Hhhc--CCCCCCCCCCC
Q 039825 99 VALF--PEPLKDTRDPR 113 (117)
Q Consensus 99 ~~~~--~~~~~~~~~~~ 113 (117)
...+ |+......||.
T Consensus 536 ~~~~~~~~~~~~~~~~~ 552 (605)
T KOG2399|consen 536 SSLQGKPGNIVIPEDNS 552 (605)
T ss_pred HHHhcCCCceecccCCc
Confidence 3333 33333334443
No 296
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=1.1e+02 Score=26.68 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=30.7
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----chHHH
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-----NRAHV 73 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-----GRr~v 73 (117)
+-++..+|- ++=|.+.++..+.+++.+|+.||.+-.+ ||||+
T Consensus 314 ~~Alvg~fy---~~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wi 360 (593)
T KOG1277|consen 314 MLALVGVFY---TERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWI 360 (593)
T ss_pred HHHHHhhhh---ccchHHHHHHHHHHHhcccccccccceeeehhccHHHH
Confidence 444555554 4478899999999999999999987543 55544
No 297
>PF13272 DUF4063: Protein of unknown function (DUF4063)
Probab=27.19 E-value=1e+02 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039825 37 HTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH 68 (117)
Q Consensus 37 ~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~ 68 (117)
-+|+.|++.+. +-++....+-..||+.||.
T Consensus 19 ~~sP~Qlpv~l--yKlslvslaavlGYwlDR~ 48 (107)
T PF13272_consen 19 LVSPQQLPVVL--YKLSLVSLAAVLGYWLDRA 48 (107)
T ss_pred HhChhhhhhHH--HHHHHHHHHHHHHHHHHHh
Confidence 35777766655 5555556667889999983
No 298
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=27.14 E-value=59 Score=25.66 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=26.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhccccchhhHhhc
Q 039825 65 FVHHNRAHVIALESNTEPVPVPRKAETQSHRIPLVALF 102 (117)
Q Consensus 65 aDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~ 102 (117)
+=|+|+|+...++...|.++..+...+.+....++.+.
T Consensus 202 av~lG~~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (282)
T PRK12875 202 ATVLGERRTYAYCAACWLLAAAAFAAVDLRLGALLLVY 239 (282)
T ss_pred hhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688998888888888888777777666555544443
No 299
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.70 E-value=1.4e+02 Score=17.21 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=17.1
Q ss_pred HHHHHHHHHhh-hhchHHHHHHHHHHHHHHH
Q 039825 56 SCYPLAAYLFV-HHNRAHVIALESNTEPVPV 85 (117)
Q Consensus 56 l~~p~~G~LaD-R~GRr~vl~~~~~~~sl~t 85 (117)
+.....|+..| ++|.++......++.+++.
T Consensus 15 ~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~ 45 (55)
T PF09527_consen 15 LVGFFLGYWLDKWFGTSPWFTLIGLLLGIAA 45 (55)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34445666666 4677566665555555544
No 300
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=24.90 E-value=84 Score=27.20 Aligned_cols=30 Identities=7% Similarity=-0.158 Sum_probs=23.1
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHhhhhch
Q 039825 41 IGLDSL-TLFRSIVQSSCYPLAAYLFVHHNR 70 (117)
Q Consensus 41 ~q~G~l-~s~~~l~~~l~~p~~G~LaDR~GR 70 (117)
.+.+++ ..++..+..+|..++|.++||+-|
T Consensus 282 ~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~ 312 (493)
T KOG1330|consen 282 HNATLIFGGVTCAGGSLGVLFGGIISDKLSR 312 (493)
T ss_pred cccchhhhhHHHhhchhhheehHHHHHHHHH
Confidence 444444 468899999999999999999543
No 301
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.99 E-value=1.6e+02 Score=21.87 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHhhcCCCCC
Q 039825 72 HVIALESNTEPVPVPRKAETQSHRIPLVALFPEPLK 107 (117)
Q Consensus 72 ~vl~~~~~~~sl~t~l~a~a~s~~~~l~~~~~~~~~ 107 (117)
++++..+..+.+.++ .++..++.+||+|-.
T Consensus 17 ~v~~~~v~~lai~sl------~~s~llI~lFg~~~~ 46 (165)
T PF11286_consen 17 RVIVACVASLAILSL------AFSQLLIALFGGESG 46 (165)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHcCCCCC
Confidence 444444444444443 344578999997643
No 302
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=23.42 E-value=1.1e+02 Score=25.20 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHH
Q 039825 10 LVNLAGIMERADVS-LLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYP 59 (117)
Q Consensus 10 ll~l~~~~d~~D~~-il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p 59 (117)
++-+|.++|..-.. +..+++-++..++|+++.+.|.+...+.-...+.-|
T Consensus 323 ~lilG~~m~~~a~~ii~~pi~~P~~~~~Gidpi~~g~~~~~~~~ig~iTPP 373 (416)
T PF06808_consen 323 LLILGMFMDTTAAIIIVAPILAPIAQALGIDPIHFGVFMFYNAEIGLITPP 373 (416)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCCCCC
Confidence 34556677776666 344566667778999999999998776544444433
No 303
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=23.09 E-value=4.3e+02 Score=21.81 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=28.8
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039825 29 YKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH 68 (117)
Q Consensus 29 lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~ 68 (117)
-|.++. +-.+...|++.+.++.+..+|+-+..++..|.
T Consensus 268 tPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 268 TPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred eceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455552 11245699999999999999999998877665
No 304
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=21.65 E-value=31 Score=19.27 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=0.0
Q ss_pred hhhhchHHHH
Q 039825 65 FVHHNRAHVI 74 (117)
Q Consensus 65 aDR~GRr~vl 74 (117)
+|||||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 6899986543
No 305
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=21.46 E-value=1.7e+02 Score=24.14 Aligned_cols=61 Identities=16% Similarity=0.031 Sum_probs=49.1
Q ss_pred HHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 20 ADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 20 ~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
+|+..+-.=+..+++.++-..+-++|+.++.+...-..+=-+|.-+.-|||..+=..-...
T Consensus 195 Idq~~Vd~hi~el~~QL~~c~Sv~~wiq~WNsy~~~ff~~nFg~pa~cfGr~Hvd~~l~t~ 255 (346)
T cd01709 195 IDQSQVDAHIDELRKQLDACKSVLSWIQAWNSYIGRFFSNNFGKPANCFGREHVDAILATH 255 (346)
T ss_pred eeHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhcCCcchhcCHHHHHHHHHHH
Confidence 4666677778899999998899999999998877777777888899999999876544333
No 306
>PTZ00207 hypothetical protein; Provisional
Probab=20.45 E-value=4.1e+02 Score=23.29 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh-CC-ChhhhHH-HHHHHHHHHHHHHHHHHHHh
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAAL-HT-DPIGLDS-LTLFRSIVQSSCYPLAAYLF 65 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~-~l-s~~q~G~-l~s~~~l~~~l~~p~~G~La 65 (117)
+++++.++++..--..++.-=+..|.+++ |- ++++... +++.++++.++|-...|++.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence 34555555544433333333366777777 65 3343333 77888888889999999888
Done!