Query 039825
Match_columns 117
No_of_seqs 128 out of 1020
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.6 3.6E-15 1.2E-19 115.4 12.5 99 2-100 22-123 (438)
2 4gc0_A D-xylose-proton symport 99.6 2.9E-15 1E-19 118.0 9.7 82 9-90 15-104 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.6 1.4E-14 4.8E-19 112.3 10.4 98 2-100 24-125 (451)
4 2gfp_A EMRD, multidrug resista 99.4 1.6E-13 5.3E-18 104.9 7.5 93 8-100 2-94 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.4 5.7E-12 1.9E-16 99.4 12.4 98 3-100 10-114 (491)
6 2xut_A Proton/peptide symporte 99.2 5.2E-11 1.8E-15 94.8 9.7 95 5-99 11-114 (524)
7 2cfq_A Lactose permease; trans 99.1 8.9E-11 3E-15 92.1 6.7 76 9-84 10-86 (417)
8 3o7q_A L-fucose-proton symport 98.7 2.5E-07 8.5E-12 71.2 12.0 86 11-96 263-350 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.5 1.1E-06 3.8E-11 67.7 10.7 87 6-92 252-342 (451)
10 2cfq_A Lactose permease; trans 98.2 6.2E-06 2.1E-10 64.4 9.0 58 40-97 258-315 (417)
11 4gc0_A D-xylose-proton symport 98.0 6.1E-05 2.1E-09 58.9 11.6 86 4-89 275-360 (491)
12 4aps_A DI-OR tripeptide H+ sym 97.5 0.00012 4.2E-09 57.3 5.5 68 23-90 300-373 (491)
13 2gfp_A EMRD, multidrug resista 97.4 5.5E-05 1.9E-09 57.2 1.8 66 8-73 201-267 (375)
14 2xut_A Proton/peptide symporte 79.1 20 0.00068 27.6 10.1 40 44-83 151-190 (524)
15 2g9p_A Antimicrobial peptide l 73.4 2 6.8E-05 21.2 1.7 14 60-73 2-15 (26)
16 4dve_A Biotin transporter BIOY 47.0 33 0.0011 24.8 5.0 23 49-71 101-123 (198)
17 3pro_C Alpha-lytic protease; P 38.1 86 0.0029 22.0 5.9 44 26-69 6-49 (166)
18 2dw3_A Intrinsic membrane prot 22.3 1.3E+02 0.0046 18.6 4.0 13 101-113 53-65 (77)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.63 E-value=3.6e-15 Score=115.44 Aligned_cols=99 Identities=12% Similarity=-0.106 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+++++.+..+++..++.+++..+.+.++|.+++++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 35577788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhccccchhhHh
Q 039825 82 PVPVPRK---AETQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~---a~a~s~~~~l~~ 100 (117)
+++++++ ++++|++.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHH
Confidence 9999999 888999887654
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.60 E-value=2.9e-15 Score=118.02 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCC--------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSLLPGVYKEVGAALHT--------DPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNT 80 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~il~~~lp~i~~~~~l--------s~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~ 80 (117)
++.++|.+++++|..+++.++|.++++++. +.++.|++.+++.+++.+|++++|+++||+|||+++.++.++
T Consensus 15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l 94 (491)
T 4gc0_A 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445778899999999999999999999843 346789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 039825 81 EPVPVPRKAE 90 (117)
Q Consensus 81 ~sl~t~l~a~ 90 (117)
+.++++++++
T Consensus 95 ~~i~~i~~a~ 104 (491)
T 4gc0_A 95 FFISGVGSAW 104 (491)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=1.4e-14 Score=112.26 Aligned_cols=98 Identities=7% Similarity=-0.231 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 039825 2 KSENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTE 81 (117)
Q Consensus 2 ~~r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~ 81 (117)
+++|+.+..+.++.++++++...++..+|.+.+++ .+..|.|++.+++.+++.++++++|+++||+|||+++..+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 35678889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----ccccchhhHh
Q 039825 82 PVPVPRKAE----TQSHRIPLVA 100 (117)
Q Consensus 82 sl~t~l~a~----a~s~~~~l~~ 100 (117)
+++++++++ ++|++.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~ 125 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVL 125 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHH
Confidence 999999999 9998886654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.45 E-value=1.6e-13 Score=104.91 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPR 87 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l 87 (117)
+++++++.+++.++..++.+.+|.+.+++|+++.|.|++.+++.+++.++++++|+++||+|||+++..+..++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccchhhHh
Q 039825 88 KAETQSHRIPLVA 100 (117)
Q Consensus 88 ~a~a~s~~~~l~~ 100 (117)
+++++|++.+++.
T Consensus 82 ~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 82 AVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHH
Confidence 9999888776543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.38 E-value=5.7e-12 Score=99.39 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH-----hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHH
Q 039825 3 SENLTMALVNLAGIMERADVSLL-PGVYKEVGAA-----LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVH-HNRAHVIA 75 (117)
Q Consensus 3 ~r~~~l~ll~l~~~~d~~D~~il-~~~lp~i~~~-----~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR-~GRr~vl~ 75 (117)
++++.++.+.+..+++.+....+ +.+.+.++++ +|++..|.|++.+.+.+++.++++++|+++|| +|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 34456677777777777777655 4455556666 99999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHh
Q 039825 76 LESNTEPVPVPRKAETQSHRIPLVA 100 (117)
Q Consensus 76 ~~~~~~sl~t~l~a~a~s~~~~l~~ 100 (117)
.+.++++++++++++++|++.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGS 114 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999876654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.22 E-value=5.2e-11 Score=94.78 Aligned_cols=95 Identities=12% Similarity=-0.158 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhC------CChhhhHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHH
Q 039825 5 NLTMALVNLAGIMERADVSLLP-GVYKEVGAALH------TDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH-NRAHVIAL 76 (117)
Q Consensus 5 ~~~l~ll~l~~~~d~~D~~il~-~~lp~i~~~~~------ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~-GRr~vl~~ 76 (117)
++.++.+.++.+++.+....+. .+.+.+++++| ++..+.|++.+++.+++.++++++|+++||+ |||+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444556666666766665444 44455788899 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcc-ccchhhH
Q 039825 77 ESNTEPVPVPRKAETQ-SHRIPLV 99 (117)
Q Consensus 77 ~~~~~sl~t~l~a~a~-s~~~~l~ 99 (117)
+.++++++.+++++++ |++.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999998 8776544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.12 E-value=8.9e-11 Score=92.14 Aligned_cols=76 Identities=11% Similarity=-0.132 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 039825 9 ALVNLAGIMERADVSL-LPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVP 84 (117)
Q Consensus 9 ~ll~l~~~~d~~D~~i-l~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~ 84 (117)
..+.+..++..+-... .+.+-..+++++|+++.|.|++.+.+.+++.+++|++|+++||+|||+++..+..+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3344444444444343 344444577889999999999999999999999999999999999999999998888764
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.69 E-value=2.5e-07 Score=71.24 Aligned_cols=86 Identities=9% Similarity=-0.190 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhHHHH-H-HHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 039825 11 VNLAGIMERADVSLLPGVYK-E-VGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRK 88 (117)
Q Consensus 11 l~l~~~~d~~D~~il~~~lp-~-i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~ 88 (117)
..++.++...-...+....| . +++.+|.+..+.|.+.+...++..++.++.|+++||+|||+++..+.++..++.++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33444444443344434444 4 455569999999999999999999999999999999999999999999998888888
Q ss_pred Hhccccch
Q 039825 89 AETQSHRI 96 (117)
Q Consensus 89 a~a~s~~~ 96 (117)
.+.++...
T Consensus 343 ~~~~~~~~ 350 (438)
T 3o7q_A 343 AFAGGHVG 350 (438)
T ss_dssp HHCCHHHH
T ss_pred HHcCCcHH
Confidence 88766543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.49 E-value=1.1e-06 Score=67.65 Aligned_cols=87 Identities=5% Similarity=-0.203 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHHHHHHHHH
Q 039825 6 LTMALVNLAGIMERADVSLLPGVYKEVGAA-LHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHH--NRAHVIALESNTEP 82 (117)
Q Consensus 6 ~~l~ll~l~~~~d~~D~~il~~~lp~i~~~-~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~--GRr~vl~~~~~~~s 82 (117)
+.++.+.+..++...-...+...+|.+.++ +|+++.+.|.+.+...++..++++++|+++||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 344555566666666566666667777666 899999999999999999999999999999999 99999888877766
Q ss_pred -HHHHHHHhcc
Q 039825 83 -VPVPRKAETQ 92 (117)
Q Consensus 83 -l~t~l~a~a~ 92 (117)
++.++..+.+
T Consensus 332 ~~~~~~~~~~~ 342 (451)
T 1pw4_A 332 TIATIVYWMNP 342 (451)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHHHhc
Confidence 6666666653
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.21 E-value=6.2e-06 Score=64.41 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhccccchh
Q 039825 40 PIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPVPVPRKAETQSHRIP 97 (117)
Q Consensus 40 ~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl~t~l~a~a~s~~~~ 97 (117)
..+.|.+.+...++..++.++.|+++||+|||+++..+..+.++.....+++++.+.+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV 315 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4567888888888999999999999999999999999988888887777777665443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.04 E-value=6.1e-05 Score=58.86 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 4 ENLTMALVNLAGIMERADVSLLPGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 4 r~~~l~ll~l~~~~d~~D~~il~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
+++.+..+....+....-...+..-.+.+.++.+.+..+.........+...+++++.+++.||+|||+.+..+....++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 34444555555555554455666667888999999988888888888899999999999999999999998877776666
Q ss_pred HHHHHH
Q 039825 84 PVPRKA 89 (117)
Q Consensus 84 ~t~l~a 89 (117)
+.+..+
T Consensus 355 ~~~~l~ 360 (491)
T 4gc0_A 355 GMFSLG 360 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.52 E-value=0.00012 Score=57.27 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=48.1
Q ss_pred HHHhHHHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH-----HHHHHHHHHHHHHHh
Q 039825 23 SLLPGVYK-EVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIA-----LESNTEPVPVPRKAE 90 (117)
Q Consensus 23 ~il~~~lp-~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~-----~~~~~~sl~t~l~a~ 90 (117)
......++ ..++.++.+..+.|.+.+...++..+++++.|++.||+|||+... .+..+.+++..+.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33333344 445557888788999999999999999999999999999986654 566666665555544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.37 E-value=5.5e-05 Score=57.22 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 039825 8 MALVNLAGIMERADVSLLPGVYKEV-GAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHNRAHV 73 (117)
Q Consensus 8 l~ll~l~~~~d~~D~~il~~~lp~i-~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~GRr~v 73 (117)
+....+..++...-...+....|.. ++++|.++.+.|.+.+...++..+++++.|++.||+||+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 267 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW 267 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555655 44589999999999999999999999999999999998433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=79.08 E-value=20 Score=27.64 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Q 039825 44 DSLTLFRSIVQSSCYPLAAYLFVHHNRAHVIALESNTEPV 83 (117)
Q Consensus 44 G~l~s~~~l~~~l~~p~~G~LaDR~GRr~vl~~~~~~~sl 83 (117)
|+......++..++.++.|++.|.+|-+..+........+
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 151 DMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3366778889999999999999999988877665554333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=73.44 E-value=2 Score=21.19 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHhhhhchHHH
Q 039825 60 LAAYLFVHHNRAHV 73 (117)
Q Consensus 60 ~~G~LaDR~GRr~v 73 (117)
++|.|..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 57999999999964
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=47.02 E-value=33 Score=24.82 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhchH
Q 039825 49 FRSIVQSSCYPLAAYLFVHHNRA 71 (117)
Q Consensus 49 ~~~l~~~l~~p~~G~LaDR~GRr 71 (117)
=|.+++.+++.+.|+++||..++
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46788888999999999997654
No 17
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=38.07 E-value=86 Score=21.99 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039825 26 PGVYKEVGAALHTDPIGLDSLTLFRSIVQSSCYPLAAYLFVHHN 69 (117)
Q Consensus 26 ~~~lp~i~~~~~ls~~q~G~l~s~~~l~~~l~~p~~G~LaDR~G 69 (117)
+-++..+++++|+++.|.---...-.-...+..=+-.-|.|+|+
T Consensus 6 ~~l~~Am~RDLGlt~~qa~~Rl~~e~~a~~~~~~l~~~lG~~fa 49 (166)
T 3pro_C 6 PQLKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 49 (166)
T ss_dssp CHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 45788899999999999876655444444444445555555554
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.25 E-value=1.3e+02 Score=18.62 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=11.4
Q ss_pred hcCCCCCCCCCCC
Q 039825 101 LFPEPLKDTRDPR 113 (117)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (117)
+.||.-|++.||.
T Consensus 53 ~LPE~Sr~aP~P~ 65 (77)
T 2dw3_A 53 MLPIQENQAPAPN 65 (77)
T ss_dssp CTTTTCSSCSSCC
T ss_pred hCchhcccCCCCc
Confidence 5799999999985
Done!