BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039827
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 20 QSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEF---YGDYELVCCPLVCKF 76
+ T+W++DN+D + G+WF+T GGVEGNPG QT +NWFK+E G YE+V CP VCK
Sbjct: 87 EPTVWRVDNYDPSRGKWFITTGGVEGNPGAQTLKNWFKLERVGTDQGTYEIVHCPSVCKS 146
Query: 77 CKIFC 81
C C
Sbjct: 147 CVFLC 151
>pdb|3TC2|A Chain A, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|B Chain B, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|C Chain C, Crystal Structure Of Potato Serine Protease Inhibitor
Length = 187
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 16 KTSVQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKI--EEFYGDYELVCCPLV 73
K V TIWK+ ++DA+LG + GG G Q +WFKI +G Y L+ CP+
Sbjct: 95 KMCVSYTIWKVGDYDASLGTMLLETGGTIG----QADSSWFKIVKSSQFG-YNLLYCPVT 149
Query: 74 C----KFC-KIFCIFMNGGVRHLALSDIPFSVIF 102
+FC K+ + NG R + D P V F
Sbjct: 150 TSSDDQFCLKVGVVHQNGKRRLALVKDNPLDVSF 183
>pdb|2QN4|A Chain A, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
pdb|2QN4|B Chain B, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
Length = 200
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 19 VQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYGDYELVCCPLVCKFCK 78
VQST W + + + G V G + G P P + N F++E++ G Y+LV C C+
Sbjct: 113 VQSTEWHVGD-EPLTGARRVVTGPLIG-PSPSGRENAFRVEKYGGGYKLVSC---RDSCQ 167
Query: 79 IFCIFMNGGVRHLALSDIPFSVIF 102
+ +G L S P V+F
Sbjct: 168 DLGVSRDGARAWLGASQPPHVVVF 191
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 17 TSVQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYG----DYELVCCPL 72
T +QST W +D+ + A G+ V G V+ +P P + N F+IE++ G +Y+L+ C
Sbjct: 89 TCLQSTEWHIDS-ELAAGRRHVITGPVK-DPSPSGRENAFRIEKYSGAEVHEYKLMSCGD 146
Query: 73 VCKFCKIFCIFMNG 86
C+ +F G
Sbjct: 147 WCQDLGVFRDLKGG 160
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 1 MTFSPVNPKKGVIFVKTSVQ-STIWKLDNFDAA-------LGQWFVTIGGVEGNPGPQTK 52
+ FS K+G I+ T ++ + K D +++ G+ V IGG E +P +
Sbjct: 61 VRFSSPEEKQGKIYTDTELEIEFVEKPDCAESSKWVIVKDSGEARVAIGGSEDHPQGELV 120
Query: 53 RNWFKIEEFYG-DYELVCCPLV-CKFCKIFCIFMNGGVRHLAL---SDIPFSVIF 102
R +FKIE+ Y+LV CP C I G R L L D+PF V+F
Sbjct: 121 RGFFKIEKLGSLAYKLVFCPKSDSGSCSDIGINYE-GRRSLVLKSSDDVPFRVVF 174
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 189
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 17 TSVQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYG----DYELVCCPL 72
T +QST W +D+ + A G+ V G V+ +P P + N F+IE++ G +Y+L+
Sbjct: 97 TCLQSTEWHIDS-ELAAGRRHVITGPVK-DPSPSGRENAFRIEKYSGAEVHEYKLMSSGD 154
Query: 73 VCKFCKIFCIFMNG 86
C+ +F G
Sbjct: 155 WCQDLGVFRDLKGG 168
>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
Length = 184
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 20 QSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEE 60
++T WK+D F +G W VT+GG +G G ++ + FKI++
Sbjct: 91 ETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKK 130
>pdb|3OG4|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space
Group P21212
pdb|3OG6|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space
Group P212121
Length = 226
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 51 TKRNWFKIEEFYGDYELVCCPLVCKFCKIFCIFMNGGVRHLALSD 95
T+R W ++EE G EL+C + K ++ F G VR ++ S
Sbjct: 46 TRRRWREVEECAGTKELLCSMMCLKKQDLYNKF-KGRVRTVSPSS 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.145 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,440,777
Number of Sequences: 62578
Number of extensions: 136328
Number of successful extensions: 214
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 9
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)