Query 039827
Match_columns 102
No_of_seqs 120 out of 240
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 13:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00178 STI Soybean trypsin in 100.0 2.2E-32 4.7E-37 196.6 11.3 97 1-102 56-170 (172)
2 smart00452 STI Soybean trypsin 100.0 1.3E-31 2.8E-36 192.7 11.5 96 1-102 55-168 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 2.8E-31 6E-36 191.2 8.6 98 1-102 56-174 (176)
4 PF09888 DUF2115: Uncharacteri 46.2 37 0.00081 24.2 3.9 26 43-71 116-141 (163)
5 PRK01022 hypothetical protein; 40.2 49 0.0011 23.8 3.7 25 44-71 119-143 (167)
6 COG4066 Uncharacterized protei 35.5 50 0.0011 23.8 3.0 23 46-71 118-140 (165)
7 PF13082 DUF3931: Protein of u 35.4 24 0.00052 21.2 1.2 15 79-94 41-55 (66)
8 PF12992 DUF3876: Domain of un 33.8 1.1E+02 0.0024 19.9 4.3 25 34-69 17-41 (95)
9 PF08772 NOB1_Zn_bind: Nin one 32.6 12 0.00026 23.5 -0.4 33 55-94 15-53 (73)
10 PF15165 REC114-like: Meiotic 32.3 80 0.0017 24.2 3.9 22 19-40 26-47 (243)
11 KOG3352 Cytochrome c oxidase, 28.6 89 0.0019 22.4 3.4 32 35-70 109-148 (153)
12 PF12702 Lipocalin_3: Lipocali 26.2 47 0.001 21.6 1.5 37 20-62 40-76 (93)
13 KOG1936 Histidyl-tRNA syntheta 23.3 28 0.0006 29.3 0.0 24 59-94 109-132 (518)
14 KOG1407 WD40 repeat protein [F 23.1 2.8E+02 0.0061 22.0 5.5 18 77-94 190-207 (313)
15 PF04879 Molybdop_Fe4S4: Molyb 23.1 42 0.00091 18.9 0.8 20 74-94 8-30 (55)
No 1
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=2.2e-32 Score=196.61 Aligned_cols=97 Identities=46% Similarity=0.772 Sum_probs=85.9
Q ss_pred CEEecCCCCCCeEEcCCC------------CCCceEEEcccCCCCcceEEEECCCCCCCCCCCCCccEEEEEeCC---ee
Q 039827 1 MTFSPVNPKKGVIFVKTS------------VQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYG---DY 65 (102)
Q Consensus 1 v~Fsp~~~~~~vI~~~td------------~~St~W~v~~~d~~~~~~~V~tgG~~g~pg~~t~~~~FkIeK~~~---~Y 65 (102)
|+|+|.++++++|||+|+ ++|++|+|+++|+ .++|+|+|||.+++ +.+|||||||++. .|
T Consensus 56 v~Fs~~~~~~~~I~e~t~lnI~F~~~~~c~~~st~W~V~~~~~-~~~~~V~~Gg~~~~----~~~~~FkIek~~~~~~~Y 130 (172)
T cd00178 56 VKFSPPNPKSDVIRESTDLNIEFDAPTWCCGSSTVWKVDRDST-PEGLFVTTGGVKGN----TLNSWFKIEKVSEGLNAY 130 (172)
T ss_pred EEEEeCCCCCCEEECCCcEEEEeCCCCcCCCCCCEEEEeccCC-ccCeEEEeCCcCCC----cccceEEEEECCCCCCcE
Confidence 689998778999999999 4789999997555 78999999998875 6899999999985 79
Q ss_pred EEEeCCCCCC-cccceeEEecCCc-cEEEecC-CCeeEEC
Q 039827 66 ELVCCPLVCK-FCKIFCIFMNGGV-RHLALSD-IPFSVIF 102 (102)
Q Consensus 66 KLvfCp~~~~-~C~~~ci~~d~~G-rrL~l~~-~p~~V~F 102 (102)
||+|||+.|. .|.+++|+.|++| |||||++ +||.|+|
T Consensus 131 KL~~Cp~~~~~~C~~VGi~~d~~g~rrL~l~~~~p~~V~F 170 (172)
T cd00178 131 KLVFCPSSCDSKCGDVGIFIDPEGVRRLVLSDDNPLVVVF 170 (172)
T ss_pred EEEEcCCCCCCceeecccEECCCCcEEEEEcCCCCeEEEE
Confidence 9999998764 6999999998788 9999997 8999998
No 2
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=99.97 E-value=1.3e-31 Score=192.67 Aligned_cols=96 Identities=42% Similarity=0.736 Sum_probs=84.4
Q ss_pred CEEecCCCCCCeEEcCCC-----------CCCceEEEcccCCCCcceEEEECCCCCCCCCCCCCccEEEEEeCC---eeE
Q 039827 1 MTFSPVNPKKGVIFVKTS-----------VQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYG---DYE 66 (102)
Q Consensus 1 v~Fsp~~~~~~vI~~~td-----------~~St~W~v~~~d~~~~~~~V~tgG~~g~pg~~t~~~~FkIeK~~~---~YK 66 (102)
|+|+|+++++++|||+|+ ++|++|+|++ |++.++|+|+||| +||.. +|||||||+++ .||
T Consensus 55 V~Fs~~~~~~~ii~e~t~lnI~F~~~~~C~~st~W~V~~-~~~~~~~~V~~gg---~~~~~--~~~FkIek~~~~~~~YK 128 (172)
T smart00452 55 VKFSPPNPSDFIIRESTDLNIEFDAPPLCAQSTVWTVDE-DSAPEGLAVKTGG---YPGVR--DSWFKIEKYSGESNGYK 128 (172)
T ss_pred EEEeecCCCCCEEecCceEEEEeCCCCCCCCCCEEEEec-CCccccEEEEeCC---cCCCC--CCeEEEEECCCCCCCEE
Confidence 689997778999999998 6789999996 7788999999999 55543 69999999985 799
Q ss_pred EEeCCCCCC--cccceeEEecCCc-cEEEecC-CCeeEEC
Q 039827 67 LVCCPLVCK--FCKIFCIFMNGGV-RHLALSD-IPFSVIF 102 (102)
Q Consensus 67 LvfCp~~~~--~C~~~ci~~d~~G-rrL~l~~-~p~~V~F 102 (102)
|+|||+.|+ .|.+++|+.|++| |||||++ +||.|+|
T Consensus 129 Lv~Cp~~~~~~~C~~vGi~~d~~g~rrL~ls~~~p~~v~F 168 (172)
T smart00452 129 LVYCPNGSDDDKCGDVGIFIDPEGGRRLVLSNENPLVVVF 168 (172)
T ss_pred EEEcCCCCCCCccCccCeEECCCCcEEEEEcCCCCeEEEE
Confidence 999998875 7999999998788 9999996 6999998
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=99.97 E-value=2.8e-31 Score=191.19 Aligned_cols=98 Identities=47% Similarity=0.833 Sum_probs=84.3
Q ss_pred CEEec--CCCCCCeEEcCCC-----------CCCceEEEcccCCCCcceEEEECCCCCCCCCCCCCccEEEEEeCC----
Q 039827 1 MTFSP--VNPKKGVIFVKTS-----------VQSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFYG---- 63 (102)
Q Consensus 1 v~Fsp--~~~~~~vI~~~td-----------~~St~W~v~~~d~~~~~~~V~tgG~~g~pg~~t~~~~FkIeK~~~---- 63 (102)
|+|+| .++.+++|||+|+ +.+++|+|+++|+++++ ||+|||.+| .++.+|||||||++.
T Consensus 56 v~Fs~~~~~~~~~~ir~st~l~I~F~~~~~c~~~~~W~V~~~~~~~~~-~V~~gg~~~---~~~~~~~FkIek~~~~~~~ 131 (176)
T PF00197_consen 56 VKFSPPYRNSFDTVIRESTDLNIEFSSPTSCACSTVWKVVKDDPETGQ-FVKTGGVKG---PETVDSWFKIEKYEDGFNN 131 (176)
T ss_dssp EEEEESSSSSSTBCTBTTSEEEEEESSECTTSSSSBEEEEEETTTTEE-EEEEESSSS---SGCGCCEEEEEEESSSSTT
T ss_pred EEEEeCCcccCCCeeEcceEEEEEEccCCCCCccCEEEEeecCcccce-EEEeCCccc---CCccCcEEEEEEeCCCCCC
Confidence 68998 4567889999999 67889999986766566 899999887 578999999999986
Q ss_pred eeEEEeCCCCC--CcccceeEEecCCc-cEEEecC-CCeeEEC
Q 039827 64 DYELVCCPLVC--KFCKIFCIFMNGGV-RHLALSD-IPFSVIF 102 (102)
Q Consensus 64 ~YKLvfCp~~~--~~C~~~ci~~d~~G-rrL~l~~-~p~~V~F 102 (102)
.|||+|||+.| ..|.+++|+.|++| |||||++ +||.|+|
T Consensus 132 ~YKLvfCp~~~~~~~C~dvGi~~d~~g~rrL~l~~~~p~~V~F 174 (176)
T PF00197_consen 132 AYKLVFCPSVCCDSLCGDVGIYFDDNGNRRLALSDDNPFVVVF 174 (176)
T ss_dssp EEEEEEESSSSSTSSEEEEEEEEETTSEEEEEEESSSB-EEEE
T ss_pred cEEEEECCCccccCccceeeEEEcCCCeEEEEECCCCcEEEEE
Confidence 49999999874 38999999999999 9999998 8999998
No 4
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=46.17 E-value=37 Score=24.21 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCccEEEEEeCCeeEEEeCC
Q 039827 43 VEGNPGPQTKRNWFKIEEFYGDYELVCCP 71 (102)
Q Consensus 43 ~~g~pg~~t~~~~FkIeK~~~~YKLvfCp 71 (102)
..+||=.-...|-|+|++-++.| |||
T Consensus 116 ~PlHPvG~~FPGG~~V~~~~g~Y---YCP 141 (163)
T PF09888_consen 116 EPLHPVGMPFPGGFKVEEKNGNY---YCP 141 (163)
T ss_pred CCCCCCCCCCCCCeEEEEECCEE---eCc
Confidence 34566333468899999998776 899
No 5
>PRK01022 hypothetical protein; Provisional
Probab=40.15 E-value=49 Score=23.76 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=18.2
Q ss_pred CCCCCCCCCCccEEEEEeCCeeEEEeCC
Q 039827 44 EGNPGPQTKRNWFKIEEFYGDYELVCCP 71 (102)
Q Consensus 44 ~g~pg~~t~~~~FkIeK~~~~YKLvfCp 71 (102)
.+||=.-...|-|+|++-++.| |||
T Consensus 119 PlHPvG~~FPGG~~V~~~~g~y---YCP 143 (167)
T PRK01022 119 PLHPVGTPFPGGFKVEEKNGVY---YCP 143 (167)
T ss_pred CCCCCCCCCCCCeEEEeECCEE---eCc
Confidence 3566333467889999988766 899
No 6
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.46 E-value=50 Score=23.82 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.4
Q ss_pred CCCCCCCCccEEEEEeCCeeEEEeCC
Q 039827 46 NPGPQTKRNWFKIEEFYGDYELVCCP 71 (102)
Q Consensus 46 ~pg~~t~~~~FkIeK~~~~YKLvfCp 71 (102)
||-.-+..|-||++|-++-| |||
T Consensus 118 HPpgt~FPGgfkVrkkgnvy---YCP 140 (165)
T COG4066 118 HPPGTTFPGGFKVRKKGNVY---YCP 140 (165)
T ss_pred CCCCCcCCCceEEEeeCCEE---ecc
Confidence 55445678999999998876 899
No 7
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=35.41 E-value=24 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=10.4
Q ss_pred ceeEEecCCccEEEec
Q 039827 79 IFCIFMNGGVRHLALS 94 (102)
Q Consensus 79 ~~ci~~d~~GrrL~l~ 94 (102)
.+|.-. .+||||+|+
T Consensus 41 vlcget-pdgrrlvlt 55 (66)
T PF13082_consen 41 VLCGET-PDGRRLVLT 55 (66)
T ss_pred EEEccC-CCCcEEEEE
Confidence 455433 689999996
No 8
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=33.84 E-value=1.1e+02 Score=19.94 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=19.0
Q ss_pred cceEEEECCCCCCCCCCCCCccEEEEEeCCeeEEEe
Q 039827 34 GQWFVTIGGVEGNPGPQTKRNWFKIEEFYGDYELVC 69 (102)
Q Consensus 34 ~~~~V~tgG~~g~pg~~t~~~~FkIeK~~~~YKLvf 69 (102)
|.| +++.| +| -|.|.+.++.|+|.-
T Consensus 17 G~W-~Sv~~---~P-------~v~I~r~g~~Y~vti 41 (95)
T PF12992_consen 17 GEW-ESVNG---KP-------DVTIYRNGGSYKVTI 41 (95)
T ss_pred EEe-EccCC---CC-------CEEEEECCCeEEEEE
Confidence 455 77777 66 789999988898764
No 9
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=32.62 E-value=12 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=9.9
Q ss_pred cEEEEEeCCeeEEEeCCCCCCcccc-----eeEEecCCc-cEEEec
Q 039827 55 WFKIEEFYGDYELVCCPLVCKFCKI-----FCIFMNGGV-RHLALS 94 (102)
Q Consensus 55 ~FkIeK~~~~YKLvfCp~~~~~C~~-----~ci~~d~~G-rrL~l~ 94 (102)
-|+|.+. -..+|||. |.+ +-+.+|++| ..+-+.
T Consensus 15 Cf~~t~~---~~k~FCp~----CGn~TL~rvsvsv~~~G~~~~~~~ 53 (73)
T PF08772_consen 15 CFKITKD---MTKQFCPK----CGNATLKRVSVSVDEDGKIKLHLK 53 (73)
T ss_dssp S--EES----SS--S-SS----S--S--EEEE-B--SS---B----
T ss_pred cccCcCC---CCceeCcc----cCCCcceEEEEEECCCCCEEEEec
Confidence 4666653 56789995 532 114568899 777765
No 10
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=32.28 E-value=80 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=15.2
Q ss_pred CCCceEEEcccCCCCcceEEEE
Q 039827 19 VQSTIWKLDNFDAALGQWFVTI 40 (102)
Q Consensus 19 ~~St~W~v~~~d~~~~~~~V~t 40 (102)
+.|+.|||.+.+++++..-+++
T Consensus 26 ~~s~~wkv~es~ee~~~lvlti 47 (243)
T PF15165_consen 26 ASSPSWKVFESNEESGYLVLTI 47 (243)
T ss_pred CCCccceeecccccCCceEEEE
Confidence 5788999997666666554333
No 11
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=28.58 E-value=89 Score=22.38 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCCCCCCCCccEEEEEeC--------CeeEEEeC
Q 039827 35 QWFVTIGGVEGNPGPQTKRNWFKIEEFY--------GDYELVCC 70 (102)
Q Consensus 35 ~~~V~tgG~~g~pg~~t~~~~FkIeK~~--------~~YKLvfC 70 (102)
.+.|.-|..+++ +.-.||.|+|-+ .-|||+.=
T Consensus 109 ~RiVGC~c~eD~----~~V~Wmwl~Kge~~rc~eCG~~fkL~~v 148 (153)
T KOG3352|consen 109 KRIVGCGCEEDS----HAVVWMWLEKGETQRCPECGHYFKLVPV 148 (153)
T ss_pred ceEEeecccCCC----cceEEEEEEcCCcccCCcccceEEeeec
Confidence 456777665553 334799999986 23777754
No 12
>PF12702 Lipocalin_3: Lipocalin-like; InterPro: IPR024311 This is a family of proteins of 115 residues on average. There are 16 subunits in each asymmetric unit cell. The interface interaction indicates that the biomolecule of protein Q8A9E6 from SWISSPROT should be a monomer. The family has two highly conserved tryptophan residues. The fold is very similar to the lipocalin-like fold from several comparable structures.; PDB: 3HTY_I.
Probab=26.21 E-value=47 Score=21.61 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCceEEEcccCCCCcceEEEECCCCCCCCCCCCCccEEEEEeC
Q 039827 20 QSTIWKLDNFDAALGQWFVTIGGVEGNPGPQTKRNWFKIEEFY 62 (102)
Q Consensus 20 ~St~W~v~~~d~~~~~~~V~tgG~~g~pg~~t~~~~FkIeK~~ 62 (102)
....|++.. | ..+-+|-.+|+.+.......|+|+|..
T Consensus 40 ~y~~Wk~~g-~-----~Lil~g~s~Gn~~~~~~~~t~~I~~lt 76 (93)
T PF12702_consen 40 QYEKWKLEG-N-----KLILEGESIGNGQSSEFTDTFDIEKLT 76 (93)
T ss_dssp EEEEEEEET-T-----EEEEEEEEEETTEEEEEEEEEEEEEE-
T ss_pred ceeeEEEcC-C-----EEEEEEEEccCCccEEEEEEEEEEEeC
Confidence 456899653 2 246666667765434456789999985
No 13
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=28 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.1
Q ss_pred EEeCCeeEEEeCCCCCCcccceeEEecCCccEEEec
Q 039827 59 EEFYGDYELVCCPLVCKFCKIFCIFMNGGVRHLALS 94 (102)
Q Consensus 59 eK~~~~YKLvfCp~~~~~C~~~ci~~d~~GrrL~l~ 94 (102)
.||+.+=||+||- -|++|++++|.
T Consensus 109 gKYGEdskLiYdl------------kDQGGEl~SLR 132 (518)
T KOG1936|consen 109 GKYGEDSKLIYDL------------KDQGGELCSLR 132 (518)
T ss_pred hhcccccceeEeh------------hhcCCcEEEee
Confidence 5777555999984 47777888887
No 14
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=23.14 E-value=2.8e+02 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.3
Q ss_pred ccceeEEecCCccEEEec
Q 039827 77 CKIFCIFMNGGVRHLALS 94 (102)
Q Consensus 77 C~~~ci~~d~~GrrL~l~ 94 (102)
-..+||.+|.+||.||..
T Consensus 190 snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATG 207 (313)
T ss_pred cceEEEEECCCCceEeec
Confidence 356889999999999996
No 15
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=23.13 E-value=42 Score=18.90 Aligned_cols=20 Identities=15% Similarity=0.692 Sum_probs=9.3
Q ss_pred CCccccee---EEecCCccEEEec
Q 039827 74 CKFCKIFC---IFMNGGVRHLALS 94 (102)
Q Consensus 74 ~~~C~~~c---i~~d~~GrrL~l~ 94 (102)
|+.|..-| +.+ ++|+.+.+.
T Consensus 8 C~~C~~gC~i~~~v-~~g~i~~v~ 30 (55)
T PF04879_consen 8 CPYCSSGCGIDVYV-KDGKIVKVE 30 (55)
T ss_dssp -SSCTT--EEEEEE-ETTEEEEEE
T ss_pred CcCCcCCCcEEEEE-ecCceEEEE
Confidence 44577777 333 456555554
Done!