BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039828
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 153/363 (42%), Gaps = 60/363 (16%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD-----------------CAKRMTSSSQIDVKFL 89
+ N K +TPLH+AAR G + AK L+ CA R+ ++ VK L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM--VKLL 99
Query: 90 ME------MKNVRGNTALH--------EALNALQDAKKDKNKPKEDGVTSLD-------- 127
+E + G+T LH E + AL + + + + G T L
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 128 SLARSLVSED--PNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKS 185
+A L+ D PNA+ + +PL++AV N DI++ +L G +
Sbjct: 160 RVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYT 214
Query: 186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVL 245
P+ +A + ++ + + + + + Q TP+H AA H E V L + L
Sbjct: 215 PLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
N+ GL P HL + G VPV ++ M + G LHVA+ G V
Sbjct: 274 -GNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 306 ILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
+L+ +D +N G +PLH AA GH + +L K+G A + ++ G T I
Sbjct: 330 LLQHQAD-----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAI 383
Query: 365 AEQ 367
A++
Sbjct: 384 AKR 386
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASD 311
L P H+AS G +P++ L++ P + N K + LH+AA+ G ++L+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQ--- 68
Query: 312 LTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
+N D TPLH AA GH + +L + A ++ G T IA ++
Sbjct: 69 -NKAKVNAKAKDDQTPLHCAARIGHTNMVKLL-LENNANPNLATTAGHTPLHIAARE 123
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA HLE V+ L E D V K++ G P HLA+ NG + V+ LE +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
+ G+ LH+AA+ G V +LEA +N D +G TPLHLAA GH
Sbjct: 63 AKD---KNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLE 115
Query: 339 VAVILGKDG 347
V +L + G
Sbjct: 116 VVKLLLEAG 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQP 207
++PL+LA + + ++++ +LEA D +AK G++P+ +A L ++K++ +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
A + +D+ TP+H AA HLE V+ L E D V K++ G P HLA+ NG + V+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV 117
Query: 268 GEFLE 272
LE
Sbjct: 118 KLLLE 122
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS 310
G P HLA+ NG + V+ LE + + G+ LH+AA+ G V +LEA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 311 DLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
+N D +G TPLHLAA GH V +L + G
Sbjct: 59 ----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 27/134 (20%)
Query: 52 GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH--------E 103
G TPLH+AAR+G L+ K+L++ + + K+ G T LH E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA------------KDKNGRTPLHLAARNGHLE 49
Query: 104 ALNALQDAKKDKNKPKEDGVTSLDSLARS-------LVSEDPNASYLMNVDCKSPLYLAV 156
+ L +A D N ++G T L AR+ L+ E + + ++PL+LA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Query: 157 ESKNEDILEYILEA 170
+ + ++++ +LEA
Sbjct: 110 RNGHLEVVKLLLEA 123
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ ++ G TPLH+AAR+G L+ K+L++ + + K+ G T LH
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------------KDKNGRTPLHLA 75
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLARS 132
E + L +A D N ++G T L AR+
Sbjct: 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVD 73
+ ++ G TPLH+AAR+G L+ K+L++
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 147 DCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206
D ++PL A E+ + + ++Y+++A + D DA EG + + +A + +++ +
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV 266
+ QD+ TPM WA H++ V+ L D ++ NEE + H A+ +GCV +
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDI 159
Query: 267 MGEFLEKENMPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGN 325
L + H N G + LH+AA++ R D V + SD+T K + +G
Sbjct: 160 AEILLAAKCDLHA---VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-----NKEGE 211
Query: 326 TPLHLAALYGHYFVAVILGK 345
TPL A+L + A+ + K
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----I 239
+SP+ A E + + M+ + ++Q TP+ AA +HLE V++L + +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
+P K+ EG HLA+ G V+ L M + + G + A + +
Sbjct: 71 DP-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM---DVNCQDDGGWTPMIWATEYK 122
Query: 300 DVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFY 357
V + +L + SD IN D++ N LH AA G +A IL + + +N +
Sbjct: 123 HVDLVKLLLSKGSD-----INIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIH 176
Query: 358 GQTAYDIA--EQQYAKIIPEFSENDD 381
G + IA E +Y ++ S + D
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSD 202
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AAS HLE V L + D V + G+ P HLA+A G +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
I+ V K G DV N D+DG+TPLHLAA YGH
Sbjct: 95 -----------IVEVLLKHGADV----------------NAYDNDGHTPLHLAAKYGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 147 DCKSPLYLAVESKNEDILEYILE-ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDK 205
D +PL+LA + + +I+E +L+ VN + L G +P+ +A L +++++ K
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVNA---SDLTGITPLHLAAATGHLEIVEVLL-K 101
Query: 206 QPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
A + D +TP+H AA HLE V L + D V +++ G F ++ NG
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNG 157
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
H+A + G + V+ ++ P N++ N+G LH+A KK +VS I + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
DK +N D G TPL A GH AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
AE D+++ G A D+A + K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
H+A + G + V+ ++ P N++ N+G LH+A KK +VS I + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
DK +N D G TPL A GH AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
AE D+++ G A D+A + K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
H+A + G + V+ ++ P N++ N+G LH+A KK +VS I + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
DK +N D G TPL A GH AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
AE D+++ G A D+A + K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
+D+ TP+H AA HLE V L + D V K+++G P HLA+ G +
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 93
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV N D DG TPLHLAA
Sbjct: 94 ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH + +L K G A+ + + +G+TA+DI+
Sbjct: 122 REGHLEIVEVLLKAG-ADVNAQDKFGKTAFDIS 153
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ ++ G TPLH+AAR+G L+ ++L+ + + K+ G T LH
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------------KDKDGYTPLHLA 87
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLAR 131
E + L A D N +DG T L AR
Sbjct: 88 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D DG TPLHLAA GH + +L K
Sbjct: 15 GKKLLE-AARAGQDDEV-RILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 347 G 347
G
Sbjct: 70 G 70
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D TP+H AA H E V+ L D K+ +G P HLA+ NG V+ L +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
P+ + + G+ LH+AA+ G V +L S D N D DG TPL LA
Sbjct: 93 GADPNAKD---SDGKTPLHLAAENGHKEVVKLLL--SQGADP--NTSDSDGRTPLDLARE 145
Query: 334 YGHYFVAVILGKDG 347
+G+ V +L K G
Sbjct: 146 HGNEEVVKLLEKQG 159
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
N V + +G P HLA+ NG V+ L + P+ + + G+ LH+AA+ G
Sbjct: 26 NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD---SDGKTPLHLAAENGH 82
Query: 300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ 359
V +L S D N D DG TPLHLAA GH V +L G A+ + + G+
Sbjct: 83 KEVVKLLL--SQGADP--NAKDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNTSDSDGR 137
Query: 360 TAYDIAEQQ 368
T D+A +
Sbjct: 138 TPLDLAREH 146
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 155 AVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 214
A E+ N+D ++ +LE + D+ +GK+P+ +A E ++K++ Q A +D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDS--DGKTPLHLAAENGHKEVVKLLL-SQGADPNAKD 67
Query: 215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE 274
TP+H AA H E V+ L D K+ +G P HLA+ NG V+ L +
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE 308
P+ ++ + G+ L +A + G + V +LE
Sbjct: 127 ADPNTSD---SDGRTPLDLAREHGNE-EVVKLLE 156
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 40/165 (24%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
+ +S G TPLH+AA +G + K+L+ + K+ G T LH A
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA------------KDSDGKTPLHLA 77
Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
+N KE + + L+S+ DPNA + D K+PL+LA E+ +++
Sbjct: 78 A---------ENGHKE--------VVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKE 117
Query: 163 ILEYILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDK 205
+++ +L A P D D G++P+ +A E ++K++ +
Sbjct: 118 VVKLLLSQGADPNTSDSD----GRTPLDLAREHGNEEVVKLLEKQ 158
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 294 AAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
AA+ G V +LE +D +N D DG TPLHLAA GH V +L G A+ +
Sbjct: 11 AAENGNKDRVKDLLENGAD-----VNASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPN 64
Query: 353 IINFYGQTAYDIAEQ 367
+ G+T +A +
Sbjct: 65 AKDSDGKTPLHLAAE 79
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 42/163 (25%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
+D+ TP+H AA HLE V L + D V K+++G P HLA+ G +
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 81
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV N D DG TPLHLAA
Sbjct: 82 ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 109
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375
GH + +L K G A+ + + +G+T +D+A ++ + I E
Sbjct: 110 REGHLEIVEVLLKAG-ADVNAQDKFGKTPFDLAIREGHEDIAE 151
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ ++ G TPLH+AAR+G L+ ++L+ + + K+ G T LH
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------------KDKDGYTPLHLA 75
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDC-------K 149
E + L A D N +DG T L AR E D K
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 150 SPLYLAVESKNEDILEYILEA 170
+P LA+ +EDI E + +A
Sbjct: 136 TPFDLAIREGHEDIAEVLQKA 156
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D DG TPLHLAA GH + +L K
Sbjct: 3 GKKLLE-AARAGQDDEV-RILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 347 G 347
G
Sbjct: 58 G 58
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
+D+ TP+H AA HLE V L + D V K+++G P HLA+ G +
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 81
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV N D DG TPLHLAA
Sbjct: 82 ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 109
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH + +L K G A+ + + +G+T +D+A
Sbjct: 110 REGHLEIVEVLLKAG-ADVNAQDKFGKTPFDLA 141
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ ++ G TPLH+AAR+G L+ ++L+ + + K+ G T LH
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------------KDKDGYTPLHLA 75
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDC-------K 149
E + L A D N +DG T L AR E D K
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 150 SPLYLAVESKNEDILEYILEA 170
+P LA+++ NEDI E + +A
Sbjct: 136 TPFDLAIDNGNEDIAEVLQKA 156
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D DG TPLHLAA GH + +L K
Sbjct: 3 GKKLLE-AARAGQDDEV-RILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 347 G 347
G
Sbjct: 58 G 58
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
D+Q +TP+H AA + H E V L + D V ++ +G P HLA+ NG +
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHL-------- 93
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV N D G TPLHLAA
Sbjct: 94 ----------------EIVEVLLKYGADV----------------NAQDAYGLTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH + +L K G A+ + + +G+TA+DI+
Sbjct: 122 DRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDIS 153
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N DD G+TPLHLAA GH + +L K
Sbjct: 15 GKKLLE-AARAGQDDEV-RILMANGAD---VNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 347 G 347
G
Sbjct: 70 G 70
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA + +I+E +L+ D +A+ +G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKH---GADVNARDTDGWTPLHLAADNGHLEIVEVLL-KYGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ QD TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
G T LH+AA ++ ++ + L KY + Q++ G TPLH+AA G L+ ++L+
Sbjct: 80 GWTPLHLAA-----DNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 73 DCAKRMTSSSQI-DVKFLMEMKNVRGNTALHEALNAL 108
+ + + F + + N GN L E L L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKL 168
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA HLE V L + N V K+ G+ P HLA+ G +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHL-------------- 93
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
I+ V K G DV N D G TPLHLAA GH
Sbjct: 94 ----------EIVEVLLKNGADV----------------NASDSHGFTPLHLAAKRGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K+G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKNG-ADVNAQDKFGKTAFDIS 153
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D G TPLHLAA +GH + +L K+
Sbjct: 15 GKKLLE-AARAGQDDEV-RILMANGAD---VNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 347 G 347
G
Sbjct: 70 G 70
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSS 81
+ ++S G TPLH+AAR G L+ ++L+ + +S
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI-DVKFLMEMKNVRGNTALHE 103
+ +S G TPLH+AA+ G L+ ++L+ + + + F + + N GN L E
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN--GNEDLAE 163
Query: 104 ALNAL 108
L L
Sbjct: 164 ILQKL 168
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D TP+H+AA H E V+ L D V K+ +G P H A+ G ++ + K
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
+ + + G+ LH AAK+G +++ I + +D +N D DG TPL LA
Sbjct: 93 GADVNAKD---SDGRTPLHYAAKEGHKEIVKLLISKGAD-----VNTSDSDGRTPLDLAR 144
Query: 333 LYGHYFVAVILGKDG 347
+G+ + +L K G
Sbjct: 145 EHGNEEIVKLLEKQG 159
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 33/141 (23%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ +S G TPLH AA++G + K+L+ S DV K+ G T LH
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLI--------SKGADVN----AKDSDGRTPLHYA 77
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLARS--------LVSE--DPNASYLMNV 146
E + L D N DG T L A+ L+S+ D N S +
Sbjct: 78 AKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS---DS 134
Query: 147 DCKSPLYLAVESKNEDILEYI 167
D ++PL LA E NE+I++ +
Sbjct: 135 DGRTPLDLAREHGNEEIVKLL 155
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ ++ A +D I +D +N D DG TPLH AA GH + +L
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 347 G 347
G
Sbjct: 60 G 60
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283
AA + VR L N V ++ G P HLA+ NG + ++ L+ N N +
Sbjct: 21 AARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAV- 76
Query: 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
++ G L +AA G I+E +N D +G+TPLHLAA++GH + +L
Sbjct: 77 DHAGMTPLRLAALFGH----LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 344 GKDGRAESDIINFYGQTAYDIA 365
K+G A+ + + +G+TA+DI+
Sbjct: 133 LKNG-ADVNAQDKFGKTAFDIS 153
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 209
+PL+LA + + +I+E +L+ + D G +P+++A L +++++ K A
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMTPLRLAALFGHLEIVEVLL-KNGAD 105
Query: 210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGE 269
+ D + +TP+H AA HLE V L + N V +++ G F ++ NG + E
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNED-LAE 163
Query: 270 FLEKEN 275
L+K N
Sbjct: 164 ILQKLN 169
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS 259
+++ DK A QD + T +HWA S H E V FL ++ V K++ G P H+A+
Sbjct: 25 RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE------ASDLT 313
+ G ++ L K H N + N G LH AA K R +LE A D
Sbjct: 82 SAGXDEIVKALLVKG--AHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 314 D-------------KLI----------NEMDDDGNTPLHLA 331
D K++ N D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
D + ++L+ + + + + C +PL+ A +I +LE N D + +
Sbjct: 86 DEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAM 143
Query: 187 VKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEI 239
+ A + G LKM+H +LL IQD + NTP+H A + +E +FL
Sbjct: 144 HRAAAK----GNLKMVH-----ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-T 193
Query: 240 NPDSVLQKNEEGLYPFHLA 258
S+ +N+E P +A
Sbjct: 194 QGASIYIENKEEKTPLQVA 212
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 41 YPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
Y +Q+++G+TPLH+A + ++ AK LV
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D TP+H+AA H E V+ L D K+ +G P H A+ NG ++ L K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
P+ + + G+ LH AA+ G V +L S D N D DG TPL LA
Sbjct: 93 GADPNAKD---SDGRTPLHYAAENGHKEIVKLLL--SKGADP--NTSDSDGRTPLDLARE 145
Query: 334 YGHYFVAVILGKDG 347
+G+ + +L K G
Sbjct: 146 HGNEEIVKLLEKQG 159
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 250 EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA 309
+G P H A+ NG ++ L K P+ + + G+ LH AA+ G V +L
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKD---SDGRTPLHYAAENGHKEIVKLLL-- 90
Query: 310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
S D N D DG TPLH AA GH + +L G A+ + + G+T D+A +
Sbjct: 91 SKGADP--NAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNTSDSDGRTPLDLAREH 146
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 41/166 (24%)
Query: 49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
+S G TPLH AA +G + K+L+ + K+ G T LH A
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA------------KDSDGRTPLHYAA--- 78
Query: 109 QDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
+N KE + + L+S+ DPNA + D ++PL+ A E+ +++I++
Sbjct: 79 ------ENGHKE--------IVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKL 121
Query: 167 ILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210
+L A P D D G++P+ +A E ++K++ +KQ L
Sbjct: 122 LLSKGADPNTSDSD----GRTPLDLAREHGNEEIVKLL-EKQGGWL 162
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 258 ASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI 317
A+ NG + + LE N PN ++ G+ LH AA+ G V +L S D
Sbjct: 11 AAENGNKDRVKDLLE--NGADPN-ASDSDGRTPLHYAAENGHKEIVKLLL--SKGADP-- 63
Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA-YDIAEQQYAKII 373
N D DG TPLH AA GH + +L G A+ + + G+T + AE + +I+
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIV 119
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 34/122 (27%)
Query: 48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
++S G TPLH AA +G + K+L+ + K+ G T LH A
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA------------KDSDGRTPLHYAA-- 111
Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILE 165
+N KE + + L+S+ DPN S + D ++PL LA E NE+I++
Sbjct: 112 -------ENGHKE--------IVKLLLSKGADPNTS---DSDGRTPLDLAREHGNEEIVK 153
Query: 166 YI 167
+
Sbjct: 154 LL 155
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR L N V + G P HLA+ +G + ++ L+ +++F G LH
Sbjct: 30 VRILMA-NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF---GYTPLH 85
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
+AA G I+E +N MD DG TPLHLAA +G+ + +L K G A+ +
Sbjct: 86 LAAYWGH----LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG-ADVN 140
Query: 353 IINFYGQTAYDIA 365
+ +G+TA+DI+
Sbjct: 141 AQDKFGKTAFDIS 153
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 42/148 (28%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
+TP+H AA HLE V L + D V + G P HLA+ NG +
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHL------------- 93
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
I+ V K G DV N D +G TPLHLAA GH
Sbjct: 94 -----------EIVEVLLKHGADV----------------NAKDYEGFTPLHLAAYDGHL 126
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 127 EIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G LH+AAK G I+E +N D+ G TPLHLAA GH + +L K
Sbjct: 47 GHTPLHLAAKTGH----LEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 347 GRAESDIINFYGQTAYDIA 365
G A+ + ++ G T +A
Sbjct: 103 G-ADVNAKDYEGFTPLHLA 120
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D G+TPLHLAA GH + +L K
Sbjct: 15 GKKLLE-AARAGQDDEV-RILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 347 GRAESDIINFYGQTAYDIA 365
G A+ + + YG T +A
Sbjct: 70 G-ADVNAWDNYGATPLHLA 87
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDA-KLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA ++ + +I+E +L+ D +A G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAKTGHLEIVEVLLK---YGADVNAWDNYGATPLHLAADNGHLEIVEVLL-KHGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ +D + TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
G T LH+AA ++ ++ + L K+ + ++ +G TPLH+AA DG L+ ++L+
Sbjct: 80 GATPLHLAA-----DNGHLEIVEVLL-KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 73 DCAKRMTSSSQI-DVKFLMEMKNVRGNTALHEALNAL 108
+ + + F + + N GN L E L L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKL 168
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS 259
+++ DK A QD + T +HWA S H E V FL ++ V K++ G P H+A+
Sbjct: 25 RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE------ASDLT 313
+ G ++ L K H N + N G LH AA K R +LE A D
Sbjct: 82 SAGRDEIVKALLVK--GAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 314 D-------------KLI----------NEMDDDGNTPLHLA 331
D K++ N D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
D + ++L+ + + + + C +PL+ A +I +LE N D + +
Sbjct: 86 DEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAM 143
Query: 187 VKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEI 239
+ A + G LKM+H +LL IQD + NTP+H A + +E +FL
Sbjct: 144 HRAAAK----GNLKMVH-----ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-T 193
Query: 240 NPDSVLQKNEEGLYPFHLA 258
S+ +N+E P +A
Sbjct: 194 QGASIYIENKEEKTPLQVA 212
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 41 YPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
Y +Q+++G+TPLH+A + ++ AK LV
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D TP+H AA H E V+ L D V K+ +G P H A+ NG V+ + K
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
+ + + G+ LH AA+ G ++V I + +D +N D DG TPL LA
Sbjct: 93 GADVNAKD---SDGRTPLHHAAENGHKEVVKLLISKGAD-----VNTSDSDGRTPLDLAR 144
Query: 333 LYGHYFVAVILGKDG 347
+G+ V +L K G
Sbjct: 145 EHGNEEVVKLLEKQG 159
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 33/141 (23%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
+ +S G TPLH AA +G + K+L+ S DV K+ G T LH
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLI--------SKGADVN----AKDSDGRTPLHHA 77
Query: 103 ------EALNALQDAKKDKNKPKEDGVTSLDSLARS--------LVSE--DPNASYLMNV 146
E + L D N DG T L A + L+S+ D N S +
Sbjct: 78 AENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS---DS 134
Query: 147 DCKSPLYLAVESKNEDILEYI 167
D ++PL LA E NE++++ +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ ++ A +D I +D +N D DG TPLH AA GH V +L
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 347 G 347
G
Sbjct: 60 G 60
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D+ T +HWA S H E V FL ++ V K++ G P H+A++ G ++ L K
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS---DLTD---------------- 314
+ N G LH AA K R +LE D D
Sbjct: 97 GAQVNA---VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 315 KLI----------NEMDDDGNTPLHLA 331
K+I N D +GNTPLHLA
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLA 180
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
D + ++L+ + + + C +PL+ A +I +LE N D E +
Sbjct: 87 DEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAM 144
Query: 187 VKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEI 239
+ A + G LKM+H +LL IQD + NTP+H A + +E + L
Sbjct: 145 HRAAAK----GNLKMIH-----ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 195
Query: 240 NPDSVLQKNEEGLYPFHLA 258
S+ +N+E P +A
Sbjct: 196 GA-SIYIENKEEKTPLQVA 213
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 41 YPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
Y +Q+++G+TPLH+A + ++ AK+LV
Sbjct: 162 YKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D+ T +HWA S H E V FL ++ V K++ G P H+A++ G ++ L K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS---DLTD---------------- 314
+ N G LH AA K R +LE D D
Sbjct: 96 GAQVNA---VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 315 KLI----------NEMDDDGNTPLHLA 331
K+I N D +GNTPLHLA
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLA 179
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
D + ++L+ + + + C +PL+ A +I +LE N D E +
Sbjct: 86 DEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAM 143
Query: 187 VKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEI 239
+ A + G LKM+H +LL IQD + NTP+H A + +E + L
Sbjct: 144 HRAAAK----GNLKMIH-----ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 194
Query: 240 NPDSVLQKNEEGLYPFHLA 258
S+ +N+E P +A
Sbjct: 195 GA-SIYIENKEEKTPLQVA 212
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 41 YPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
Y +Q+++G+TPLH+A + ++ AK+LV
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283
AA+ + VR L N V ++ GL P HLA+ANG + ++ E L K N N
Sbjct: 13 AAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIV-EVLLK-NGADVNA-S 68
Query: 284 NNKGQNILHVAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
++ G LH+AA G + + +L +D +N D G TPLHLAAL G +
Sbjct: 69 DSAGITPLHLAAYDGH-LEIVEVLLKHGAD-----VNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 342 ILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376
+L K G A+ + + G TA+DI+ Q + + E
Sbjct: 123 VLLKHG-ADVNAQDALGLTAFDISINQGQEDLAEI 156
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTA 68
T +G T LH+AAA + + L + + +S G TPLH+AA DG L+
Sbjct: 35 TDDNGLTPLHLAAANG-----QLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIV 88
Query: 69 KILV 72
++L+
Sbjct: 89 EVLL 92
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
TP+H AA HLE V L + D V + G P HLA+ +G + ++
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIV 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA+ HLE V L + D V + G P HLA+ G +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
I+ V K G DV N +D G+TPLHLAA+ GH
Sbjct: 95 -----------IVEVLLKHGADV----------------NAVDTWGDTPLHLAAIMGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDI 353
AA+ G+D V IL A+ +N D G TPLHLAA YGH + +L K G A+ +
Sbjct: 21 AARAGQDDEVR-ILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLKHG-ADVNA 75
Query: 354 INFYGQTAYDIA 365
I+ G T +A
Sbjct: 76 IDIXGSTPLHLA 87
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDA-KLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA + +I+E +L+ D +A + G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH---GADVNAIDIXGSTPLHLAALIGHLEIVEVLL-KHGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ D +TP+H AA + HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK 345
KG LH+AA D I+E +N D+DG+TPLHLAAL+GH + +L K
Sbjct: 46 KGNTPLHLAA----DYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Query: 346 DGRAESDIINFYGQTAYDIA 365
G A+ + + +G+TA+DI+
Sbjct: 102 HG-ADVNAQDKFGKTAFDIS 120
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
D + NTP+H AA DHLE V L + D V + +G P HLA+ G + ++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIV 96
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
AA+ G+D V IL A+ +N D GNTPLHLAA Y H + +L K G
Sbjct: 21 AARAGQDDEVR-ILMANGAD---VNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
GNT LH+AA +++++ + L K+ + ++ G TPLH+AA G L+ ++L+
Sbjct: 47 GNTPLHLAA-----DYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 73 DCAKRMTSSSQID-VKFLMEMKNVRGNTALHEALNAL 108
+ + + F + + N GN L E L L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKL 135
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINP 241
+G +P+ +A + L +++++ K A + D +TP+H AA HLE V L +
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 242 DSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
D V +++ G F ++ NG + E L+K N
Sbjct: 105 D-VNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR L N V + GL P HLA+ G + ++ L+ + ++ G LH
Sbjct: 30 VRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLH 85
Query: 293 VAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350
+AA G + + +L +D +N +D G+TPLHLAA+ GH + +L K G A+
Sbjct: 86 LAALIGH-LEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-AD 138
Query: 351 SDIINFYGQTAYDIA 365
+ + +G+TA+DI+
Sbjct: 139 VNAQDKFGKTAFDIS 153
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDI 353
AA+ G+D V IL A+ +N D G TPLHLAA YGH + +L K G A+ +
Sbjct: 21 AARAGQDDEVR-ILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLKHG-ADVNA 75
Query: 354 INFYGQTAYDIA 365
I+ G T +A
Sbjct: 76 IDIMGSTPLHLA 87
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDA-KLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA + +I+E +L+ D +A + G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH---GADVNAIDIMGSTPLHLAALIGHLEIVEVLL-KHGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ D +TP+H AA + HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA HLE V L + N V + G+ P HLA+ G + V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEV------------ 95
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
+ V K G DV N D +G TPLHLAA GH
Sbjct: 96 ------------VEVLLKNGADV----------------NANDHNGFTPLHLAANIGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D G TPLHLAA +GH + +L K+
Sbjct: 15 GKKLLE-AARAGQDDEV-RILMANGAD---VNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 347 G 347
G
Sbjct: 70 G 70
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILE-ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA + +I+E +L+ VN D G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSL---GVTPLHLAADRGHLEVVEVLL-KNGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ D TP+H AA++ HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 42/152 (27%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
D TP+H AA+V HLE V L N V + G P HLA++ G +
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASLGHL--------- 81
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
I+ V K G DV N D G TPL+LAA
Sbjct: 82 ---------------EIVEVLLKYGADV----------------NAKDATGITPLYLAAY 110
Query: 334 YGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+GH + +L K G A+ + + +G+TA+DI+
Sbjct: 111 WGHLEIVEVLLKHG-ADVNAQDKFGKTAFDIS 141
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
G++P+ +A + L +++++ + A + D TP+H AAS+ HLE V L + D
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 243 SVLQKNEEGLYPFHLASANGCVPVM 267
V K+ G+ P +LA+ G + ++
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIV 117
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 283 FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
+++ G+ LH+AA G I+E +N +D +G TPLHLAA GH + +
Sbjct: 31 YDHYGRTPLHMAAAVGH----LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 343 LGKDG 347
L K G
Sbjct: 87 LLKYG 91
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDI 353
AA+ G+D V IL A+ N D G TPLH+AA GH + +L ++G A+ +
Sbjct: 9 AARAGQDDEV-RILMANGAD---ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVNA 63
Query: 354 INFYGQTAYDIA 365
++ G T +A
Sbjct: 64 VDTNGTTPLHLA 75
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA HLE V L + N V + G P HLA+ G +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHL-------------- 93
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
I+ V K G DV N DD+G TPLHLAA GH
Sbjct: 94 ----------EIVEVLLKNGADV----------------NAKDDNGITPLHLAANRGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ GRD V IL A+ +N D G TPLHLAA +GH + +L K+
Sbjct: 15 GKKLLE-AARAGRDDEV-RILMANGAD---VNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 347 GRAESDIINFYGQTAYDIA 365
G A+ + + G T +A
Sbjct: 70 G-ADVNAYDTLGSTPLHLA 87
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G LH+AA G I+E +N D G+TPLHLAA +GH + +L K+
Sbjct: 47 GWTPLHLAAYWGH----LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 347 G 347
G
Sbjct: 103 G 103
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDA-KLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA + +I+E +L+ D +A G +P+ +A L +++++ K A
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKN---GADVNAYDTLGSTPLHLAAHFGHLEIVEVLL-KNGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ +D+ TP+H AA+ HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
+TP+HWA HL V L + D L + EG HLA+ G ++ + K
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAK---G 132
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
++ + G L AA + V T +L +++ L ++ NT LH A L G+
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK--NTALHWAVLAGNT 190
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
V +L + G A D N G++A D+A+Q+
Sbjct: 191 TVISLLLEAG-ANVDAQNIKGESALDLAKQR 220
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 65/153 (42%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
+D +TP+H AA V HLE V L + D V + G P HLA+ G +
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLE------- 94
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV N D G+TPLHLAA
Sbjct: 95 -----------------IVEVLLKYGADV----------------NADDTIGSTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH + +L K G A+ + + +G+TA+DI+
Sbjct: 122 DTGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDI 353
AA+ G+D V IL A+ +N D G+TPLHLAA GH + +L K+G A+ +
Sbjct: 21 AARAGQDDEV-RILMANGAD---VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-ADVNA 75
Query: 354 INFYGQTAYDIAEQQ 368
++F G T +A ++
Sbjct: 76 LDFSGSTPLHLAAKR 90
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
SG+T LH+AA R H + + KY + ++ G TPLH+AA G L+ ++L
Sbjct: 79 SGSTPLHLAAK---RGHLEI---VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 72 V 72
+
Sbjct: 133 L 133
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILV 72
+ +++ GDTPLH+AAR G L+ ++L+
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLL 67
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS 310
G P HLA+ NG + V+ LE + + G+ LH+AA+ G V +LEA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 311 DLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
+N D +G TPLHLAA GH V +L + G
Sbjct: 59 ----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
G++P+ +A L ++K++ + A + +D+ TP+H AA HLE V+ L E D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
V K++ G P HLA+ NG + V+ LE
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
+ ++ G TPLH+AAR+G L+ K+L++ + + K+ G T LH A
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------------KDKNGRTPLHLA 75
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVD 73
+ ++ G TPLH+AAR+G L+ K+L++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
+D+ TP+H AA HLE V L + D V ++ G P HLA+ G +
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLE------- 94
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
I+ V K G DV+ T D G TPLHLAA
Sbjct: 95 -----------------IVEVLLKNGADVNAT----------------DTYGFTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH + +L K G A+ + + +G+TA+DI+
Sbjct: 122 DAGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
AA+ G+D V IL A+ +N DD G TPLHLAA+ GH + +L K G
Sbjct: 21 AARAGQDDEV-RILMANGAD---VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
SG T LH+AA I+ H + + K+ + + GDTPLH+AA G L+ ++L
Sbjct: 46 SGKTPLHLAA---IKGHLEI---VEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 72 V 72
+
Sbjct: 100 L 100
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
TP+H AA HLE V L + D V + G P HLA+ G +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
I+ V K G DV N D G+TPLHLAA GH
Sbjct: 95 -----------IVEVLLKYGADV----------------NAFDMTGSTPLHLAADEGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
+ +L K G A+ + + +G+TA+DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDI 353
AA+ G+D V IL A+ +N +D+ G TPLHLAA+ GH + +L K G A+ D
Sbjct: 21 AARAGQDDEV-RILIANGAD---VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-ADVDA 75
Query: 354 INFYGQTAYDIA 365
+ YG T +A
Sbjct: 76 ADVYGFTPLHLA 87
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDA-KLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+LA S + +I+E +L+ D DA + G +P+ +A L +++++ K A
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKH---GADVDAADVYGFTPLHLAAMTGHLEIVEVLL-KYGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
+ D +TP+H AA HLE V L + D V +++ G F ++ NG
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNG 157
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE-A 309
G+ P HL NG + ++ L+ + ++ G LH+AA +G V +L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD---KSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+D +N MD G TPLHLAA GH + +L K G A+ + + +G+TA+DI+
Sbjct: 104 AD-----VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTA 68
+ SG T LH+AA R H + + KY + + +G TPLH+AA DG L+
Sbjct: 76 SDKSGWTPLHLAA---YRGHLEI---VEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV 129
Query: 69 KILVDCAKRMTSSSQID-VKFLMEMKNVRGNTALHEALNAL 108
++L+ + + + F + + N GN L E L L
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKL 168
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 150 SPLYLAVESKNEDILEYILE-ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
+PL+L V + + +I+E +L+ A VN + G +P+ +A L +++++ K A
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNA---SDKSGWTPLHLAAYRGHLEIVEVLL-KYGA 104
Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
+ D Q TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNED-LA 162
Query: 269 EFLEKEN 275
E L+K N
Sbjct: 163 EILQKLN 169
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDS-VLQKNEEGLYPFHLASANGCVPVMGEFLE 272
DE+ TP+ WA++ +E VRFL E D +L K E LAS G ++G LE
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES--ALSLASTGGYTDIVGLLLE 90
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA--SDLTDKLINEMDDDGNTPLHL 330
++ N N G +L+ A +G V L A +DLT + D G TP+ L
Sbjct: 91 RD--VDINIYDWNGGTPLLY--AVRGNHVKCVEALLARGADLTTEA-----DSGYTPMDL 141
Query: 331 AALYGHYFVAVIL 343
A G+ V ++
Sbjct: 142 AVALGYRKVQQVI 154
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR + + + Q ++ G P H A G V+ + + + + N LH
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---VMNRGDDTPLH 77
Query: 293 VAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES 351
+AA G RD+ + +D IN +++ GN PLH A +G VA L +G A
Sbjct: 78 LAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALV 131
Query: 352 DIINFYGQTAYDIAEQQYAKIIPEFSE 378
I N YG+ D A+ +++ E +E
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAE 158
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 275 NMPHPNELFNNK-GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
N H N++ + K G LHVAA KG T +L+ +N D DG TPLH AA
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKG----YTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 334 YGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSE 378
+G IL ++ + + +N GQTA+D+A++ + E +
Sbjct: 242 WGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQK 285
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAK 69
+ SG T LH+AAA + + + AR + + +++ G TPLH AA G + +
Sbjct: 196 AKSGGTALHVAAA---KGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 70 ILVD 73
ILV+
Sbjct: 250 ILVE 253
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
IN+ D++G PLH AA G+ +A L G A +N G T DI
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDI 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR + + + Q ++ G P H A G V+ + + + + N LH
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---VMNRGDDTPLH 72
Query: 293 VAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES 351
+AA G RD+ + +D IN +++ GN PLH A +G VA L +G A
Sbjct: 73 LAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALV 126
Query: 352 DIINFYGQTAYDIAEQQYAKIIPEFSE 378
I N YG+ D A+ +++ E +E
Sbjct: 127 SICNKYGEMPVDKAKAPLRELLRERAE 153
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 42/133 (31%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR L N V K+E GL P +LA+A+G + I+
Sbjct: 30 VRILMA-NGADVNAKDEYGLTPLYLATAHGHLE------------------------IVE 64
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
V K G DV N +D G TPLHLAA GH +A +L K G A+ +
Sbjct: 65 VLLKNGADV----------------NAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVN 107
Query: 353 IINFYGQTAYDIA 365
+ +G+TA+DI+
Sbjct: 108 AQDKFGKTAFDIS 120
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
++P+H AA + + L + ++ +N + P HLA G V+ L+ P
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
+ +L G L A G V +L+ IN ++ GNT LH A + H
Sbjct: 146 NKKDL---SGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHEAVIEKHV 198
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIAEQ-----QYAKIIPEFSENDDDM 383
FV +L G A ++N +TA D AEQ + +++P + DD+
Sbjct: 199 FVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLDDV 248
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
+TS G++ LH+AA A L K+ +N+ PLH+A + G Q
Sbjct: 81 VTSQDGSSPLHVAAL------HGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 68 AKILVDC-----AKRMTSSSQID----------VKFLME------MKNVRGNTALHEAL 105
K L+D K ++ ++ + V L++ N +GNTALHEA+
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
+N DG++PLH+AAL+G + +L K G
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHG 109
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L AA+ G+D V IL A+ +N D DG TPLHLAA GH + +L K
Sbjct: 3 GKKLLE-AARAGQDDEV-RILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 347 GRAESDIINFYGQTAYDIA 365
G A+ + + +G+TA+DI+
Sbjct: 58 G-ADVNAQDKFGKTAFDIS 75
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID-VKFLMEMKNVRGNTALHE 103
+ ++ G TPLH+AAR+G L+ ++L+ + + + F + + N GN L E
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN--GNEDLAE 85
Query: 104 AL 105
L
Sbjct: 86 IL 87
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 42/133 (31%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
VR L N V +++ GL P HLA+ M + LE I+
Sbjct: 30 VRILMA-NGADVNAEDKVGLTPLHLAA-------MNDHLE-----------------IVE 64
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
V K G DV N +D G TPLHL A+YGH + +L K G A+ +
Sbjct: 65 VLLKNGADV----------------NAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVN 107
Query: 353 IINFYGQTAYDIA 365
+ +G+TA+DI+
Sbjct: 108 AQDKFGKTAFDIS 120
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDS-VLQKNEEGLYPFHLASANGCVPVMGEFLE 272
DE+ TP+ WA++ +E VRFL E D +L K E LAS G ++G LE
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES--ALSLASTGGYTDIVGLLLE 90
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA--SDLTDKLINEMDDDGNTPLHL 330
++ N N G +L+ A G V L A +DLT + D G TP+ L
Sbjct: 91 RD--VDINIYDWNGGTPLLY--AVHGNHVKCVEALLARGADLTTEA-----DSGYTPMDL 141
Query: 331 AALYGHYFVAVIL 343
A G+ V ++
Sbjct: 142 AVALGYRKVQQVI 154
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
++ G LH+AAK+G I+E +N D G TPLHLAA GH + +L
Sbjct: 44 DDAGVTPLHLAAKRGH----LEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 344 GKDGRAESDIINFYGQTAYDIA 365
+ G A+ + + +G+TA+DI+
Sbjct: 100 LEYG-ADVNAQDKFGKTAFDIS 120
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G+ +L A + G+D V IL A+ +N MDD G TPLHLAA GH + +L K
Sbjct: 15 GKKLLE-ATRAGQDDEV-RILMANGAD---VNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 347 GRAESDIINFYGQTAYDIA 365
G A+ + + +G+T +A
Sbjct: 70 G-ADVNARDIWGRTPLHLA 87
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
G +P+ +A + L +++++ K A + +D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
V +++ G F ++ NG + E L+K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
D+ TP+H AA HLE V L + D V ++ G P HLA+ G + ++ LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 283 FNNKGQNILHVAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340
++ G LH+AAK+G + + +L +D +N D G TPLHLAA GH +
Sbjct: 43 MDDAGVTPLHLAAKRGH-LEIVEVLLKHGAD-----VNASDSWGRTPLHLAATVGHLEIV 96
Query: 341 VILGKDGRAESDIINFYGQTAYDIA 365
+L + G A+ + + +G+TA+DI+
Sbjct: 97 EVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+N MDD G TPLHLAA GH + +L K G A+ + + +G+T +A
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGRTPLHLA 87
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
G +P+ +A + L +++++ K A + D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
V +++ G F ++ NG + E L+K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
D+ TP+H AA HLE V L + D V + G P HLA+ G + ++ LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
+G T LH+AA R H + + K+ + +S G TPLH+AA G L+ ++L
Sbjct: 46 AGVTPLHLAAK---RGHLEI---VEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 72 VDCAKRMTSSSQID-VKFLMEMKNVRGNTALHEALNAL 108
++ + + + F + + N GN L E L L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKL 135
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
A L Q+ TP+H A + E L D L ++ G P HLA GC+ +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASV 91
Query: 268 GEFLEKENMPHPNELF---NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
G + PH + + N G LH+A+ G + + +L + L + + +G
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVS--LGADVNAQEPCNG 148
Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
T LHLA + + +L K G A+ + + + G + Y +
Sbjct: 149 RTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQL 187
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDC 74
T LH+A I N +A A A P +++ +G+TPLH+A G L + +L
Sbjct: 44 TPLHLAV---ITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ- 96
Query: 75 AKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLV 134
S + + +++ N G+T LH A G + L SL
Sbjct: 97 -----SCTTPHLHSILKATNYNGHTCLHLA--------------SIHGYLGIVELLVSL- 136
Query: 135 SEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA 170
D NA N ++ L+LAV+ +N D++ +L+
Sbjct: 137 GADVNAQEPCNG--RTALHLAVDLQNPDLVSLLLKC 170
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 39/196 (19%)
Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYP---FLITMQNSKGDTPLHVAARDGMLQTAK 69
G++ LH+A HE A+ + R+ + QN+ TPLH+A + A+
Sbjct: 5 GDSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 59
Query: 70 ILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSL 129
L+ E+++ RGNT LH A ++ + S+ L
Sbjct: 60 ALLGAGCD------------PELRDFRGNTPLHLAC-------------EQGCLASVGVL 94
Query: 130 ARSLVSEDPNASYLM---NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
+S + P+ ++ N + + L+LA I+E +L +L + + G++
Sbjct: 95 TQSCTT--PHLHSILKATNYNGHTCLHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTA 151
Query: 187 VKVAIELQKLGLLKMM 202
+ +A++LQ L+ ++
Sbjct: 152 LHLAVDLQNPDLVSLL 167
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHIL-EASDLTDKLINEMDDDGNTPLHLAALY 334
+P + + ++ G+ +L AA+ G+D V ++ +D+ K D +G+TPLHLAA
Sbjct: 14 VPRGSHMGSDLGKKLLE-AARAGQDDEVRILMANGADVAAK-----DKNGSTPLHLAARN 67
Query: 335 GHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
GH V +L + G A+ + +G+TA+DI+
Sbjct: 68 GHLEVVKLLLEAG-ADVXAQDKFGKTAFDIS 97
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI-DVKFLMEMKNVRGNTALHE 103
+ ++ G TPLH+AAR+G L+ K+L++ + + + F + + N GN L E
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN--GNEDLAE 107
Query: 104 AL 105
L
Sbjct: 108 IL 109
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
+D+ +TP+H AA HLE V+ L E D V +++ G F ++ NG
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNG 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 41/130 (31%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
NTP+H AA H E V+ L D V ++++G P HLA+ NG
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNG--------------- 53
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
I+ + KG DV N DGNTP HLA GH+
Sbjct: 54 ---------HAEIVKLLLAKGADV----------------NARSKDGNTPEHLAKKNGHH 88
Query: 338 FVAVILGKDG 347
+ +L G
Sbjct: 89 EIVKLLDAKG 98
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 287 GQNILHVAAKKGRDVSVTHIL-EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL-- 343
G LH AAK G V +L + +D +N DGNTPLHLAA GH + +L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 344 -GKDGRAES 351
G D A S
Sbjct: 64 KGADVNARS 72
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAK 69
S GNT LH AA +N + L++ + ++ G+TPLH+AA++G + K
Sbjct: 6 SKDGNTPLHNAA----KNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 70 ILV 72
+L+
Sbjct: 60 LLL 62
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
A L Q+ TP+H A + E L D L ++ G P HLA GC+ +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASV 94
Query: 268 GEFLEKENMPHPNELF---NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
G + PH + + N G LH+A+ G + + +L + L + + +G
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVS--LGADVNAQEPCNG 151
Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
T LHLA + + +L K G A+ + + + G + Y +
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQL 190
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDC 74
T LH+A I N +A A A P +++ +G+TPLH+A G L + +L
Sbjct: 47 TPLHLAV---ITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ- 99
Query: 75 AKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLV 134
S + + +++ N G+T LH A + + LV
Sbjct: 100 -----SCTTPHLHSILKATNYNGHTCLHLA-----------------SIHGYLGIVELLV 137
Query: 135 SEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA 170
S + + + ++ L+LAV+ +N D++ +L+
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYP---FLITMQNSKGDTPLHVAARDGMLQTAK 69
G++ LH+A HE A+ + R+ + QN+ TPLH+A + A+
Sbjct: 8 GDSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 70 ILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
L+ E+++ RGNT LH A
Sbjct: 63 ALLGAGCD------------PELRDFRGNTPLHLA 85
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
+L + G ++H AA+ G+ ++ +LE +D +N D++GN PLHLAA GH V
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRV 118
Query: 340 AVILGKDGRAESDIINFYGQTAYDIA 365
L K + N G TA D+A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251
I+D + N P+H AA HL V FL + +V +N +G
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
+L + G ++H AA+ G ++ +LE +D +N D++GN PLHLAA GH V
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRV 118
Query: 340 AVILGKDGRAESDIINFYGQTAYDIA 365
L K + N G TA D+A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251
I+D + N P+H AA HL V FL + +V +N +G
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 283 FNNKGQNILHVAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340
++ G LH+AAK+G + + +L +D +N D G TPLHLAA GH +
Sbjct: 43 MDDAGVTPLHLAAKRGH-LEIVEVLLKHGAD-----VNASDIWGRTPLHLAATVGHLEIV 96
Query: 341 VILGKDGRAESDIINFYGQTAYDIA 365
+L + G A+ + + +G+TA+DI+
Sbjct: 97 EVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+N MDD G TPLHLAA GH + +L K G A+ + + +G+T +A
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIWGRTPLHLA 87
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
G +P+ +A + L +++++ K A + D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
V +++ G F ++ NG + E L+K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
D+ TP+H AA HLE V L + D V + G P HLA+ G + ++ LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSE 378
DGNT LH AALY +L K GRA +N G+TA DIA +++ K E E
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLE 260
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSE 378
DGNT LH AALY +L K GRA +N G+TA DIA +++ K E E
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLE 279
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340
+L + G ++H AA+ G ++ +LE +N D++GN PLHLAA GH V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE----NQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 341 VILGKDGRAESDIINFYGQTAYDIA 365
L K + N G TA D+A
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251
I+D + N P+H AA HL V FL + +V +N +G
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 283 FNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
+ G LH+AA+ G V +L+ +D +N D+ G TPLHLAA+ GH +
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD-----VNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 342 ILGKDGRAESDIINFYGQTAYDIA 365
+L K G A+ + + +G+TA+DI+
Sbjct: 98 VLLKHG-ADVNAQDKFGKTAFDIS 120
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
DE TP+H AA + HLE V L + D + N G+ P HLA+ G + ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN-FGITPLHLAAIRGHLEIV 96
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL---GKDGRAE 350
AA+ G+D V IL A+ +N +D+DG TPLHLAA GH + +L G D AE
Sbjct: 21 AARAGQDDEV-RILMANGAD---VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 351 SD 352
+
Sbjct: 77 DN 78
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
+L + G ++H AA+ G ++ +LE +D +N D++GN PLHLAA GH V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRV 118
Query: 340 AVILGKDGRAESDIINFYGQTAYDIA 365
L K + N G TA D+A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251
I+D + N P+H AA HL V FL + +V +N +G
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
+L + G ++H AA+ G ++ +LE +D +N D++GN PLHLAA GH V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRV 118
Query: 340 AVILGKDGRAESDIINFYGQTAYDIA 365
L K + N G TA D+A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251
I+D + N P+H AA HL V FL + +V +N +G
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEF- 270
I D NT +H++ S + V+ L + V ++N G P L +A + +
Sbjct: 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML-TALATLKTQDDIE 164
Query: 271 --LEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPL 328
L+ + + N + GQ L +A GR V V L A + +N DDDG+T L
Sbjct: 165 TVLQLFRLGNINAKASQAGQTALMLAVSHGR-VDVVKALLACEAD---VNVQDDDGSTAL 220
Query: 329 HLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
A +GH +A +L + + + G TA +A
Sbjct: 221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
+ +TP+H+AA + + V +L + D V K++ GL P H A + G V ++
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 276 MPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
+ + +L+ LH AA KG+ ++ + +D T K + DGNTPL L
Sbjct: 102 VVNVADLWKFTP---LHEAAAKGKYEICKLLLQHGADPTKK-----NRDGNTPLDL 149
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 291 LHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
LH AA R V ++L+ +D+ K D G PLH A YGHY VA +L K G
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAK-----DKGGLVPLHNACSYGHYEVAELLVKHG 100
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
+ +TP+H+AA + + V +L + D V K++ GL P H A + G V ++
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Query: 276 MPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
+ + +L+ LH AA KG+ ++ + +D T K + DGNTPL L
Sbjct: 104 VVNVADLWKFTP---LHEAAAKGKYEICKLLLQHGADPTKK-----NRDGNTPLDL 151
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 291 LHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
LH AA R V ++L+ +D+ K D G PLH A YGHY VA +L K G
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAK-----DKGGLVPLHNACSYGHYEVAELLVKHG 102
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
+ +TP+H+AA + + V +L + D V K++ GL P H A + G V ++
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 276 MPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
+ + +L+ LH AA KG+ ++ + +D T K + DGNTPL L
Sbjct: 100 VVNVADLWKFTP---LHEAAAKGKYEICKLLLQHGADPTKK-----NRDGNTPLDL 147
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 291 LHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
LH AA R V ++L+ +D+ K D G PLH A YGHY VA +L K G
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAK-----DKGGLVPLHNACSYGHYEVAELLVKHG 98
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Query: 287 GQNILHVAAKKGRDVSVTHIL-EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK 345
G+ +L AA+ G+D V ++ +D+ K D +G+TPLHLAA GH V +L +
Sbjct: 7 GKKLLE-AARAGQDDEVRILMANGADVAAK-----DKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 346 DGRAESDIINFYGQTAYDIA 365
G A+ + + +G+TA+DI+
Sbjct: 61 AG-ADVNAQDKFGKTAFDIS 79
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID-VKFLMEMKNVRGNTALHE 103
+ ++ G TPLH+AAR+G L+ K+L++ + + + F + + N GN L E
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN--GNEDLAE 89
Query: 104 AL 105
L
Sbjct: 90 IL 91
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
+D+ +TP+H AA HLE V+ L E D V +++ G F ++ NG
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNG 83
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN+K +TPL +AAR+G +TAK+L+D
Sbjct: 150 MQNNKEETPLFLAAREGSYETAKVLLD 176
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN+K +TPL +AAR+G +TAK+L+D
Sbjct: 76 MQNNKEETPLFLAAREGSYETAKVLLD 102
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
+EEG P A+A+G + V+ EFL +N P +L ++ L +A KG V +L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVV-EFL-LQNGADP-QLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+ D +NE D +G TPL L A++G++ V + + A+ I G + D+A
Sbjct: 106 DCG--VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
+EEG P A+A+G + V+ EFL +N P +L ++ L +A KG V +L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVV-EFL-LQNGADP-QLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+ D +NE D +G TPL L A++G++ V + + A+ I G + D+A
Sbjct: 90 DCG--VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
+EEG P A+A+G + V+ EFL +N P +L ++ L +A KG V +L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVV-EFL-LQNGADP-QLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
+ D +NE D +G TPL L A++G++ V + + A+ I G + D+A
Sbjct: 88 DCG--VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 281 ELFNNKGQNI----------LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
EL KG N+ LHVAA++ + ++E +N +D G T LH
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHR 286
Query: 331 AALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375
AAL GH +L G ++ II+ G TA + + +I+ E
Sbjct: 287 AALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNEAVQQILSE 330
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
++ D G PLH A YGHY V +L K G
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN++ +TPL +AAR+G +TAK+L+D
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLD 179
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN++ +TPL +AAR+G +TAK+L+D
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLD 211
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
IQD TP+H A S D + L + + +G P LA+ + V G
Sbjct: 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLE 141
Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
+ N ++ G++ LH AA + +L+ D N + TPL LA
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE----TPLFLA 197
Query: 332 ALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
A G Y A +L D A DI + + DIA+++
Sbjct: 198 AREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQER 233
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN++ +TPL +AAR+G +TAK+L+D
Sbjct: 186 MQNNREETPLFLAAREGSYETAKVLLD 212
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
IQD TP+H A S D + L + + +G P LA+ + V G
Sbjct: 86 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLE 142
Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
+ N ++ G++ LH AA + +L+ D N + TPL LA
Sbjct: 143 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE----TPLFLA 198
Query: 332 ALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
A G Y A +L D A DI + + DIA+++
Sbjct: 199 AREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQER 234
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
MQN++ +TPL +AAR+G +TAK+L+D
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLD 211
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF-----------NNKGQNILHVAA 295
+ +G P +AS +G G E+E+ P F + G LH+AA
Sbjct: 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAA 65
Query: 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
R + +LEAS N D+ G TPLH A
Sbjct: 66 AYSRSDAAKRLLEAS----ADANIQDNMGRTPLHAA 97
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKL-EGKSPVKVAIELQKLGLLKMMHDKQP 207
++PL+ AV + + + + ++ D DA++ +G +P+ +A L G+L+ + +
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVP-- 265
+ + D+ + +HWAA+V++++ L + + +Q N E P LA+ G
Sbjct: 149 DVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGSYETA 206
Query: 266 --VMGEFLEKENMPHPNELFNNKGQNILH 292
++ F ++ H + L + Q +H
Sbjct: 207 KVLLDHFANRDITDHMDRLPRDIAQERMH 235
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 284 NNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
N++G+ +LH+A+ KG SV ++L+ SD N D G TPLH A +GH V +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 343 L 343
L
Sbjct: 62 L 62
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
N G H+AS G +P + L+ + P + ++ G LH A G V +L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
+ L+N ++PLH AA GH + +L G A + +N +G D +
Sbjct: 64 QHK----ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDD 118
Query: 368 QYAK---IIPEFSE 378
+ K ++PE +E
Sbjct: 119 ESMKSLLLLPEKNE 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 287 GQNILHVAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344
G LH+AA G + + +L +D +N + G TPLHLAA H + +L
Sbjct: 47 GHTPLHLAAMLGH-LEIVEVLLKNGAD-----VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 345 KDGRAESDIINFYGQTAYDIA 365
K G A+ + + +G+TA+DI+
Sbjct: 101 KHG-ADVNAQDKFGKTAFDIS 120
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
AA+ G+D V IL A+ +N D G+TPLHLAA+ GH + +L K+G
Sbjct: 21 AARAGQDDEV-RILTANGAD---VNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 53/195 (27%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYP------FLITMQNSKGDTPLHVAARDGML 65
G+T LH+A +R H + +P +L Q+ DT AA D
Sbjct: 77 GGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 66 QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH--------EALNALQDAKKDKNK 117
+ D + +E +N G+T LH E + L+DA D NK
Sbjct: 135 NP--------ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 118 PKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDC 177
P+ P ++PL+LAVE++ +LE +L+A D
Sbjct: 187 PE------------------PTCG-------RTPLHLAVEAQAASVLELLLKA---GADP 218
Query: 178 DAKL-EGKSPVKVAI 191
A++ G++P+ A+
Sbjct: 219 TARMYGGRTPLGSAL 233
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 28/218 (12%)
Query: 5 FKTITSPSGNTLLHIAAAGSIRNHE---NMAMATTLARKYPFLITMQNSKGDTPLHVAAR 61
F +T G+T LH+A I HE + + + +Y + +QN G T LH+AA
Sbjct: 2 FGYVTE-DGDTALHLAV---IHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAI 54
Query: 62 DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNK---P 118
G T + L + + + L VR +T L +D +
Sbjct: 55 LGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 119 KEDGVTSLDSLARSLVSEDPNAS--------------YLMNVDCKSPLYLAVESKNEDIL 164
+ T S A + V PN N D +PL++AV K+ +++
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174
Query: 165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMM 202
+ +A + + G++P+ +A+E Q +L+++
Sbjct: 175 RLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASVLELL 211
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 322 DDGNTPLHLAALYGHY-FVAVILG-KDGRAESDIINFYGQTAYDIA 365
+DG+T LHLA ++ H F+ +LG G D+ N GQTA +A
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 53/195 (27%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYP------FLITMQNSKGDTPLHVAARDGML 65
G+T LH+A +R H + +P +L Q+ DT AA D
Sbjct: 77 GGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 66 QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH--------EALNALQDAKKDKNK 117
+ D + +E +N G+T LH E + L+DA D NK
Sbjct: 135 NP--------ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 118 PKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDC 177
P+ P ++PL+LAVE++ +LE +L+A D
Sbjct: 187 PE------------------PTCG-------RTPLHLAVEAQAASVLELLLKA---GADP 218
Query: 178 DAKL-EGKSPVKVAI 191
A++ G++P+ A+
Sbjct: 219 TARMYGGRTPLGSAL 233
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 28/218 (12%)
Query: 5 FKTITSPSGNTLLHIAAAGSIRNHE---NMAMATTLARKYPFLITMQNSKGDTPLHVAAR 61
F +T G+T LH+A I HE + + + +Y + +QN G T LH+AA
Sbjct: 2 FGYVTE-DGDTALHLAV---IHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAI 54
Query: 62 DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNK---P 118
G T + L + + + L VR +T L +D +
Sbjct: 55 LGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 119 KEDGVTSLDSLARSLVSEDPNAS--------------YLMNVDCKSPLYLAVESKNEDIL 164
+ T S A + V PN N D +PL++AV K+ +++
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174
Query: 165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMM 202
+ +A + + G++P+ +A+E Q +L+++
Sbjct: 175 RLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASVLELL 211
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 322 DDGNTPLHLAALYGHY-FVAVILG-KDGRAESDIINFYGQTAYDIA 365
+DG+T LHLA ++ H F+ +LG G D+ N GQTA +A
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 44 LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
+ T + GDTPLH+A G L LV+ ++ ++D+ N+R T LH
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDI-----YNNLR-QTPLHL 52
Query: 104 ALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163
A+ +T+L S+ R LV+ + L + ++ +LA E ++
Sbjct: 53 AV-----------------ITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTC 94
Query: 164 LEYILE-ALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM 221
L +L+ A P D +A+ +G + + VA+ + ++++ ++ + + + +P+
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 222 HWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
A + L V+ L + + +V + G H AS G +P++
Sbjct: 155 IHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLV 199
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 321 DDDGNTPLHLAALYGHYFVA---VILGKDGRAESDIINFYGQTAYDIA 365
D+DG+TPLH+A + G+ V L + G E DI N QT +A
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 174 NDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA----LLLIQDEQMNTPMHWAASVDH 229
ND + EG S + + LL+ ++D P L + DE NTP+HW S+ +
Sbjct: 84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143
Query: 230 LEGVRFL 236
LE V+ L
Sbjct: 144 LELVKHL 150
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 114
Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM 320
V+ FL E+ H + +G L +A ++G A DL D L M
Sbjct: 115 AVV-SFLAAESDLHRRDA---RGLTPLELALQRG----------AQDLVDILQGHM 156
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
+Q++ G +P+H AAR G L T K+LV+
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVE 89
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 62 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 120
Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM 320
V+ FL E+ H + +G L +A ++G A DL D L M
Sbjct: 121 AVV-SFLAAESDLHRRDA---RGLTPLELALQRG----------AQDLVDILQGHM 162
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
+Q++ G +P+H AAR G L T K+LV+
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVE 95
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 216 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 245
Q+ P+ W SV+++ +GV LYE+ P VL
Sbjct: 249 QLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVL 280
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 216 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 245
Q+ P+ W SV+++ +GV LYE+ P VL
Sbjct: 250 QLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVL 281
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
+Q++ G +P+H AAR G L T K+LV+
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVE 97
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 64 KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHS 122
Query: 265 PVMGEFLEKENMPH-------PNELFNNKG-QNILHV 293
V+ + ++ H P EL +G QN++ +
Sbjct: 123 SVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDI 159
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 47 MQNSKGDTPLHVAARDGMLQTAKILVD 73
+Q++ G +P+H AAR G L T K+LV+
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVE 95
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 62 KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHS 120
Query: 265 PVMGEFLEKENMPH-------PNELFNNKG-QNILHV 293
V+ + ++ H P EL +G QN++ +
Sbjct: 121 SVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDI 157
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 216 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 245
Q+ P+ W SV+ + +GV LYE+ P VL
Sbjct: 253 QLYNPVQWTKSVEFIAAQGVEHLYEVGPGKVL 284
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 352 DIINFYGQTAYDIAE--QQYAKIIPE 375
D +N+ GQ+AYD+A+ +QY + +PE
Sbjct: 79 DCVNYEGQSAYDVADMLKQYFRDLPE 104
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
SG T LH AAA + N E A + + Q+ K +TPL +AAR+G + +K L
Sbjct: 150 SGKTALHWAAA--VNNTE----AVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 72 VD 73
+D
Sbjct: 204 LD 205
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 324 GNTPLHLAALYGHYFVAVILGKDG 347
G +PLHLAA YGH+ +L + G
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAG 57
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
G + LH+AA+ G S T +L + ++ ++D TPLH+AA GH + +L K
Sbjct: 34 GTSPLHLAAQYGH-FSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIVEVLLKH 89
Query: 347 G 347
G
Sbjct: 90 G 90
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 209
SPL+LA + + E +L A V+ D K++ ++P+ +A +++++ K A
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVD-RTPLHMAASEGHANIVEVLL-KHGAD 92
Query: 210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
+ +D T +HWA +H E V L + D
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSL-----ARSLVSEDPNASYLM 144
M ++ RGNT LH AL A+ D ++ K VT + L AR + D N ++
Sbjct: 167 MRRQDSRGNTVLH-ALVAIADNTRENTK----FVTKMYDLLLLKCAR--LFPDSNLEAVL 219
Query: 145 NVDCKSPLYLAVESKNEDILEYILE 169
N D SPL +A ++ I ++I+
Sbjct: 220 NNDGLSPLMMAAKTGKIGIFQHIIR 244
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 207 PALLLIQDEQMNTPMH--WAASVDHLEGVRFLYEINPDSVLQK 247
PA++ ++M+T M +AA+ + V++++E+NPD VL K
Sbjct: 536 PAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVK 578
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 282 LFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
L N++G LH A G V +++ +N D DG TPLH AA + V
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 342 ILGKDGRAESDIINFYGQTAYDIAEQ 367
L + G A + QTA D E+
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEE 146
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 282 LFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
L N++G LH A G V +++ +N D DG TPLH AA + V
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 342 ILGKDGRAESDIINFYGQTAYDIAEQ 367
L + G A + QTA D E+
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEE 146
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 39/167 (23%)
Query: 113 KDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDC-------------KSPLYLAVESK 159
+D +KPK G +LD + R E +V C S + E +
Sbjct: 1989 QDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAMERICEKR 2048
Query: 160 NEDILE-------------YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206
D L +LE + ND + G P ++A L+ L L +
Sbjct: 2049 RHDGLPGLAVQWGAIGDVGVVLETMGTNDTV---IGGTLPQRIASCLEVLDLF--LSQPH 2103
Query: 207 PAL--LLIQDEQMNTPMHWAA------SVDHLEGVRFLYEINPDSVL 245
P L ++ +++ P ++ +V H+ G+R + INPDS L
Sbjct: 2104 PVLSSFVLAEKKAAAPRDGSSQKDLVKAVAHILGIRDVASINPDSTL 2150
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 254 PFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLT 313
P H A+ G + + E L+ N N L + G L+ A G V + ++
Sbjct: 76 PLHEAAKRGNLSWLRECLD--NRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 314 DKLINEMDDDGNTPLHLAALYGHY-FVAVILGKDGRAESDIINFYGQTAYDIA 365
+N+ + G+T LH AA G+ V ++L K R +D+ N + A+D A
Sbjct: 133 ---LNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR--TDLRNIEKKLAFDXA 180
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 52 GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
G+ PL +AA L + Q D++ ++ RGNT LH AL A+ D
Sbjct: 140 GELPLSLAACTNQPHIVHYLTE-----NGHKQADLR----RQDSRGNTVLH-ALVAIADN 189
Query: 112 KKDKNKPKEDGVTSLDSLARSLVSE---DPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168
++ K VT + L ++ D N L+N D SPL +A ++ I ++I+
Sbjct: 190 TRENTK----FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Query: 169 E 169
Sbjct: 246 R 246
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 286 KGQNILHVAAKKGRDVSVTHIL-EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344
KG+ LH AA+ V +++ E DK D+DG TP+ LAA G V L
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDK----QDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 345 KDGRAESDIINFYGQTAYDIAE 366
+ G A + ++ TA +A+
Sbjct: 334 QQG-ASVEAVDATDHTARQLAQ 354
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 9 TSPSGNTLLHIAAAGSIRNHENMAMATTL--------ARKYPF--LITMQNSKGDTPLHV 58
T GNT+LH S + EN+A+ T+ AR P L ++N + TPL +
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 59 AARDGMLQ 66
AA++G ++
Sbjct: 233 AAKEGKIE 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,006,953
Number of Sequences: 62578
Number of extensions: 627223
Number of successful extensions: 2052
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 468
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)